Your job contains 1 sequence.
>007921
MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPL
LNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDN
ETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPG
FDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQL
RKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGA
MTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFML
GLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQP
VLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA
NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLR
RINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007921
(585 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065868 - symbol:SCY2 "SECY HOMOLOG 2" species... 2008 1.2e-207 1
UNIPROTKB|P0AGA2 - symbol:secY species:83333 "Escherichia... 379 8.8e-35 1
TIGR_CMR|CPS_0621 - symbol:CPS_0621 "preprotein transloca... 372 5.6e-34 1
TIGR_CMR|SO_0251 - symbol:SO_0251 "preprotein translocase... 366 2.7e-33 1
TIGR_CMR|CBU_0258 - symbol:CBU_0258 "preprotein transloca... 364 4.6e-33 1
UNIPROTKB|P78283 - symbol:secY "Protein translocase subun... 363 6.0e-33 1
TIGR_CMR|VC_2576 - symbol:VC_2576 "preprotein translocase... 363 6.0e-33 1
TIGR_CMR|DET_0494 - symbol:DET_0494 "preprotein transloca... 358 2.2e-32 1
TIGR_CMR|SPO_0506 - symbol:SPO_0506 "preprotein transloca... 348 2.9e-31 1
NCBI_NP|NP_354903.2 - symbol:prlA "preprotein translocase... 335 8.2e-30 1
TAIR|locus:2054038 - symbol:SCY1 "AT2G18710" species:3702... 349 1.7e-29 1
TIGR_CMR|GSU_2837 - symbol:GSU_2837 "preprotein transloca... 332 1.8e-29 1
TIGR_CMR|BA_2734 - symbol:BA_2734 "preprotein translocase... 320 3.8e-28 1
TIGR_CMR|ECH_0428 - symbol:ECH_0428 "preprotein transloca... 316 3.1e-27 1
UNIPROTKB|P0A5Z2 - symbol:secY "Protein translocase subun... 319 3.9e-27 1
TIGR_CMR|BA_0130 - symbol:BA_0130 "preprotein translocase... 315 8.0e-27 1
TIGR_CMR|APH_0299 - symbol:APH_0299 "preprotein transloca... 310 6.1e-26 1
UNIPROTKB|P25014 - symbol:secY "Protein translocase subun... 312 2.0e-25 1
TIGR_CMR|CJE_1856 - symbol:CJE_1856 "preprotein transloca... 291 1.5e-23 1
TIGR_CMR|CHY_2289 - symbol:CHY_2289 "preprotein transloca... 270 5.9e-21 1
TIGR_CMR|NSE_0285 - symbol:NSE_0285 "preprotein transloca... 232 1.8e-16 1
>TAIR|locus:2065868 [details] [associations]
symbol:SCY2 "SECY HOMOLOG 2" species:3702 "Arabidopsis
thaliana" [GO:0005886 "plasma membrane" evidence=ISM] [GO:0009306
"protein secretion" evidence=ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0015031 "protein
transport" evidence=IEA] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=IEA;ISS]
[GO:0016020 "membrane" evidence=IEA;ISS] [GO:0009526 "plastid
envelope" evidence=IDA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] InterPro:IPR002208 Pfam:PF00344
PANTHER:PTHR10906 GO:GO:0016021 EMBL:CP002685 GO:GO:0015031
GO:GO:0031969 GO:GO:0009535 EMBL:AC007071 GO:GO:0009526
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 EMBL:AY062590 EMBL:AY093354 EMBL:BX820289
IPI:IPI00524025 PIR:H84721 RefSeq:NP_180711.4 UniGene:At.27291
ProteinModelPortal:F4IQV7 SMR:F4IQV7 PRIDE:F4IQV7
EnsemblPlants:AT2G31530.1 GeneID:817711 KEGG:ath:AT2G31530
TAIR:At2g31530 HOGENOM:HOG000241422 InParanoid:Q9SIQ4 OMA:YIPFNIN
GO:GO:0033097 Uniprot:F4IQV7
Length = 575
Score = 2008 (711.9 bits), Expect = 1.2e-207, P = 1.2e-207
Identities = 391/551 (70%), Positives = 459/551 (83%)
Query: 38 LCTKTFVSVRLSLLDSKRRQ---VPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSAL 94
LC++ + +L S+ RQ + + R L + K +S+ SD+ R D ++ E
Sbjct: 33 LCSQPRKCLTTNLNMSRTRQGHSIQMNRRHLLMKERKSFSINYSDKFRDDSMSSEEMHTD 92
Query: 95 SVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKS 154
++++E +PP D +SQ N +PK ++NRFL+F+R+SSVLN AAE FFKS
Sbjct: 93 ALDVEIIPPDSQDIRNSQN--SAVSNTLQDDRPKSFRNRFLDFVRISSVLNTAAERFFKS 150
Query: 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQ 214
EIRRRLFVTAVL+V+SR+GYFIPLPGFDRRLIPQDYLSFVSGSV+ELG+FGAE+KLS FQ
Sbjct: 151 EIRRRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQDYLSFVSGSVEELGEFGAEIKLSLFQ 210
Query: 215 LGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYS 274
LG+SPQI+ASI+MQVLCH++PSLV+LRKEGLDGHEKIKSYIWW+S FAI+EA++VA S
Sbjct: 211 LGLSPQIIASIIMQVLCHVLPSLVKLRKEGLDGHEKIKSYIWWLSFFFAIVEALVVAYTS 270
Query: 275 LPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTET 334
L YS++AA+ VKHVM+T+ LLVCGAMTM+W+CDTISESGFG GSSLIICVGILTGYTET
Sbjct: 271 LQYSVFAATAQVKHVMMTSSLLVCGAMTMTWLCDTISESGFGHGSSLIICVGILTGYTET 330
Query: 335 LYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLAS 394
L+KML+Q+ +GS W P++LGLLG+FT+VTM+AVVVTEGCRK+KLQYYGFKLAS
Sbjct: 331 LHKMLNQI------SGSFSNWLPYLLGLLGIFTVVTMFAVVVTEGCRKIKLQYYGFKLAS 384
Query: 395 AAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPET 454
A+RE SPITEVEPYIPFNINP+GMQPVLTTTYLLAFPSILASILGSPF ++KEILNPE+
Sbjct: 385 ASREGSPITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILASILGSPFLLNMKEILNPES 444
Query: 455 SVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQ 514
+VGA PWVYY+IYAFFVFLFNIFDIANLPKEIADYLNKMGARIPN+KPGKATIEYLTKIQ
Sbjct: 445 TVGAPPWVYYSIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNIKPGKATIEYLTKIQ 504
Query: 515 ASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMP 574
ASTRFWGG DHYLR IN+GFSIGFTSVLIIVGSIIELRRSY AYNVMP
Sbjct: 505 ASTRFWGGLLLSFLATASTVLDHYLRSINQGFSIGFTSVLIIVGSIIELRRSYHAYNVMP 564
Query: 575 SLSKALRRYGV 585
SLSKAL+RYGV
Sbjct: 565 SLSKALKRYGV 575
>UNIPROTKB|P0AGA2 [details] [associations]
symbol:secY species:83333 "Escherichia coli K-12"
[GO:0043952 "protein transport by the Sec complex" evidence=IMP]
[GO:0065002 "intracellular protein transmembrane transport"
evidence=IMP] [GO:0006886 "intracellular protein transport"
evidence=IMP] [GO:0016021 "integral to membrane" evidence=IEA;IDA]
[GO:0005886 "plasma membrane" evidence=IEA;IDA] [GO:0005622
"intracellular" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756 EMBL:X01563
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:U18997 GO:GO:0005622 GO:GO:0065002 TCDB:3.A.5.1.1 PDB:3J01
PDBsum:3J01 eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 PDB:2AKH PDB:2AKI
PDBsum:2AKH PDBsum:2AKI PIR:A04473 RefSeq:NP_417759.1
RefSeq:YP_492132.1 ProteinModelPortal:P0AGA2 SMR:P0AGA2
DIP:DIP-59302N IntAct:P0AGA2 PRIDE:P0AGA2
EnsemblBacteria:EBESCT00000000476 EnsemblBacteria:EBESCT00000018444
GeneID:12934410 GeneID:947799 KEGG:ecj:Y75_p3876 KEGG:eco:b3300
PATRIC:32122032 EchoBASE:EB0759 EcoGene:EG10766 KO:K03076
ProtClustDB:PRK09204 BioCyc:EcoCyc:SECY
BioCyc:ECOL316407:JW3262-MONOMER EvolutionaryTrace:P0AGA2
Genevestigator:P0AGA2 Uniprot:P0AGA2
Length = 443
Score = 379 (138.5 bits), Expect = 8.8e-35, P = 8.8e-35
Identities = 125/439 (28%), Positives = 207/439 (47%)
Query: 155 EIRRRL-FVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKL 210
E++RRL FV LIV RIG FIP+PG D ++ + L G++ E+ + GA +
Sbjct: 18 ELKRRLLFVIGALIVF-RIGSFIPIPGIDAAVLAK-LLEQQRGTIIEMFNMFSGGALSRA 75
Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 270
S F LGI P I ASI++Q+L + P+L +++KEG G KI Y + +L AI +++ +
Sbjct: 76 SIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGI 135
Query: 271 ACY--SLPYSIYAASHSVKHVMVTAFL-LVCGAMTMSWICDTISESGFGQGSSLIICVGI 327
A ++P + TA + LV G M + W+ + I+E G G G S+II GI
Sbjct: 136 ATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGI 195
Query: 328 LTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQY 387
+ G + + Q + + +L + VF VT + V V G R++ + Y
Sbjct: 196 VAGLPPAIAHTIEQ------ARQGDLHFLVLLLVAVLVFA-VTFFVVFVERGQRRIVVNY 248
Query: 388 YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPF-WQHV 446
A + ++P +N +G+ P + + ++ FP+ +AS G W +
Sbjct: 249 -----AKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWL 303
Query: 447 KEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGK 504
I + G +P +Y +YA + F F A + P+E AD L K GA +P ++PG+
Sbjct: 304 TTI-SLYLQPG-QP-LYVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGE 360
Query: 505 ATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLR-RINEGFSIGFTSVLIIVGSIIEL 563
T +Y+ K+ G ++R + F G TS+LI+V I++
Sbjct: 361 QTAKYIDKVMTRLTLVGALYITFICLI----PEFMRDAMKVPFYFGGTSLLIVVVVIMDF 416
Query: 564 RRSYQAYNVMPSLSKALRR 582
Q + AL++
Sbjct: 417 MAQVQTLMMSSQYESALKK 435
>TIGR_CMR|CPS_0621 [details] [associations]
symbol:CPS_0621 "preprotein translocase, SecY subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] [GO:0016020 "membrane" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0065002 eggNOG:COG0201
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 RefSeq:YP_267371.1
ProteinModelPortal:Q488Z3 STRING:Q488Z3 GeneID:3521449
KEGG:cps:CPS_0621 PATRIC:21464569
BioCyc:CPSY167879:GI48-708-MONOMER Uniprot:Q488Z3
Length = 445
Score = 372 (136.0 bits), Expect = 5.6e-34, P = 5.6e-34
Identities = 121/442 (27%), Positives = 202/442 (45%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKL 210
SE+++RL+ V +V+ R+G F+P+PG D ++ Q + G++ E+ + GA +
Sbjct: 19 SELKQRLWFVFVALVVLRLGSFVPIPGIDAAVLAQ-FFEQQKGTIVEMFNMFSGGALERA 77
Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 270
S LGI P I ASI+MQ+L + P++ +L+KEG G KI Y + +L A ++++ +
Sbjct: 78 SVLALGIMPYISASIIMQLLTVVHPAMAELKKEGEAGRRKISQYTRYGTLVLATVQSIAI 137
Query: 271 ACYSLPYSIYAA--SHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGIL 328
A SLP + + L+ G M + W+ + I+E G G G S+II GI+
Sbjct: 138 A-RSLPEMMQGLVINAGFSFYFTAVISLITGTMFLMWLGEQITERGIGNGISIIIFAGIV 196
Query: 329 TGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYY 388
G + + G ++G++ VF VT V V G R++ + Y
Sbjct: 197 AGMPSAVGQTAEMA-----RQGELHLLVLLLIGVV-VFA-VTFLVVFVERGQRRIVVNY- 248
Query: 389 GFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS---P---F 442
A + ++P +N +G+ P + + L+ FP LAS G P F
Sbjct: 249 ----AKRQQGRKVFAAQSTHLPLKVNMAGVIPPIFASSLILFPGTLASWFGQGDGPVADF 304
Query: 443 WQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNV 500
Q V ++P +P +Y + A + F F A + P+E AD L K GA IP +
Sbjct: 305 LQGVSGAMSP-----GQP-LYVMMLAAAIIFFCFFYTALVFNPRETADNLKKSGAFIPGI 358
Query: 501 KPGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSI 560
+PG+ T +Y+ K+ G + + F G TS+LIIV I
Sbjct: 359 RPGEQTSKYIDKVMTRLTLCGAAYITFVCLVP---QFMIMAWDVQFYFGGTSLLIIVVVI 415
Query: 561 IELRRSYQAYNVMPSLSKALRR 582
++ Q + + L++
Sbjct: 416 MDFMAQVQTHMMSHQYDNVLKK 437
>TIGR_CMR|SO_0251 [details] [associations]
symbol:SO_0251 "preprotein translocase, SecY subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208
Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 GO:GO:0006605
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
RefSeq:NP_715891.1 ProteinModelPortal:Q8EK50 GeneID:1168134
KEGG:son:SO_0251 PATRIC:23520195 Uniprot:Q8EK50
Length = 446
Score = 366 (133.9 bits), Expect = 2.7e-33, P = 2.7e-33
Identities = 121/439 (27%), Positives = 196/439 (44%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF-----GAEL 208
SE++ RL I++ R G F+P+PG D ++ + + SG++ LG F GA
Sbjct: 16 SELKARLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFAQ-QSGTI--LGMFNMFSGGALE 72
Query: 209 KLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAV 268
+ S F LGI P I ASI+MQ+L + P+L +L+KEG G +KI Y W +L ++V
Sbjct: 73 RASIFALGIMPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTRWGTLVLGTFQSV 132
Query: 269 IVACYSLPYSI--YAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 326
+A LP + + V LV G M + W+ + I+E G G G S++I G
Sbjct: 133 GIAT-GLPNLVPGLVVNIGFGFYFVAVVSLVTGTMFLMWLGEQITERGIGNGISILIFAG 191
Query: 327 ILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTI-VTMWAVVVTEGCRKVKL 385
I+ G + + Q +V +L LL V VT + V V G R++ +
Sbjct: 192 IVAGLPSAIGQTAEQAR----QGDLNV----LVLLLLAVIIFAVTYFVVFVERGQRRIVV 243
Query: 386 QYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH 445
Y A + ++P IN +G+ P + + ++ FP LA G +
Sbjct: 244 NY-----AKRQQGRKVFAAQSTHLPLKINMAGVIPPIFASSIILFPGTLAQWFGQN--ES 296
Query: 446 VKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPG 503
+ + + +V +Y +YA + F F A + P+E AD L K GA IP ++PG
Sbjct: 297 MSWLSDFSLAVSPGQPLYSLLYAAAIIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPG 356
Query: 504 KATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIEL 563
+ T Y+ K+ G + L F G TS+LI+V I++
Sbjct: 357 EQTSRYIDKVMTRLTLAGALYITFICLIP---EFMLIAWKVQFYFGGTSLLIMVVVIMDF 413
Query: 564 RRSYQAYNVMPSLSKALRR 582
Q + + +++
Sbjct: 414 MAQVQTHMMSHQYESVMKK 432
>TIGR_CMR|CBU_0258 [details] [associations]
symbol:CBU_0258 "preprotein translocase, SecY subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0005887 "integral to
plasma membrane" evidence=ISS] [GO:0015450
"P-P-bond-hydrolysis-driven protein transmembrane transporter
activity" evidence=ISS] [GO:0015627 "type II protein secretion
system complex" evidence=ISS] [GO:0015628 "protein secretion by the
type II secretion system" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00756
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 GO:GO:0006605
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
RefSeq:NP_819302.1 ProteinModelPortal:Q83EQ6 GeneID:1208139
KEGG:cbu:CBU_0258 PATRIC:17929209
BioCyc:CBUR227377:GJ7S-264-MONOMER Uniprot:Q83EQ6
Length = 442
Score = 364 (133.2 bits), Expect = 4.6e-33, P = 4.6e-33
Identities = 113/436 (25%), Positives = 198/436 (45%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLS 211
SE++RRL + I++ R+G +IP+PG D + + +G + F GA +++
Sbjct: 16 SELKRRLLFVLIGIIVYRLGAYIPVPGLDPSRLAALFHQHETGFLGMFNMFSGGALSRMT 75
Query: 212 FFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVA 271
F LG+ P I +SI++Q+ I P + LRKEG G KI Y + ++ ++L++ +
Sbjct: 76 IFALGVMPYISSSIIVQMYSQISPKMQALRKEGEAGRRKINQYTRYGTVILSLLQSAFMT 135
Query: 272 CYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGY 331
+ L S + ++ LV G M + W+ + ++E G G G SLII I + +
Sbjct: 136 KW-LVSSGTVINPNLGFYFTAIVTLVTGTMFLMWLGEQMTERGVGNGISLIIFASIASRF 194
Query: 332 TETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFK 391
+ ++ +Q+ SV +L L+ V +VT+ V R++ + Y
Sbjct: 195 PAAIGQVFTQVR----QGQMSVL---ILLLLIAVIVLVTLVVVFFERAQRRITINY---- 243
Query: 392 LASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILN 451
A + ++P IN +G+ PV+ ++ FP +A + S ++
Sbjct: 244 -AKRQQGRKLYAAQSSHLPLKINMAGVIPVIFAQSIILFPGAVAKFMSSVKGLGWLNDVS 302
Query: 452 PETSVGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGKATIEY 509
S G +P Y ++A V F+ F A + PKE AD L K GA IP ++PG+ T Y
Sbjct: 303 LALSYG-QP-AYIVVFAIAVIFFSFFYTALVFNPKETADNLKKSGAFIPGIRPGEQTANY 360
Query: 510 LTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQA 569
+ K+ G + N F G TS+LI+V I++ QA
Sbjct: 361 IDKVMTRLTLVGSVYLALVALLP---QFLILAWNVPFYFGGTSLLIVVVVIMDFMAQVQA 417
Query: 570 YNVMPSLSKALRRYGV 585
+ + +++ G+
Sbjct: 418 HLMSHQYESLMKKSGL 433
>UNIPROTKB|P78283 [details] [associations]
symbol:secY "Protein translocase subunit SecY"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009306 "protein secretion" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009306 EMBL:Y08367
EMBL:Y07817 eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593
KO:K03076 ProtClustDB:PRK09204 PIR:B82057 RefSeq:NP_232204.1
ProteinModelPortal:P78283 DNASU:2615593 GeneID:2615593
KEGG:vch:VC2576 PATRIC:20084178 Uniprot:P78283
Length = 444
Score = 363 (132.8 bits), Expect = 6.0e-33, P = 6.0e-33
Identities = 117/439 (26%), Positives = 197/439 (44%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKL 210
SE++ RLF +++ R G F+P+PG D ++ + + G++ E+ + GA +
Sbjct: 17 SELKSRLFFVIGALLVFRAGSFVPIPGIDAAVLAELFEQ-QKGTIVEMFNMFSGGALERA 75
Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 270
S LGI P I ASI++Q+L + P+L +L+KEG G KI Y + +L A +A+ +
Sbjct: 76 SILALGIMPYISASIVVQLLTVVHPALAELKKEGEAGRRKISQYTRYGTLVLATFQAIGI 135
Query: 271 ACYSLPYSI--YAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGIL 328
A LP + ++ LV G M + W+ + I+E G G G S++I GI+
Sbjct: 136 AT-GLPNMVNNLVVIDQTMFTLIATVSLVTGTMFLMWLGEQITERGIGNGISILIFAGIV 194
Query: 329 TGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTE-GCRKVKLQY 387
G L K + Q + V +L L+ V ++ VV E G R++ + Y
Sbjct: 195 AG----LPKAIGQTIEQARQGELHV----LLLLLIAVLAFAVIYFVVFMERGQRRIVVNY 246
Query: 388 YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVK 447
A + ++P IN +G+ P + + ++ FP LA G
Sbjct: 247 -----AKRQQGRKVFAAQSTHLPLKINMAGVIPAIFASSIILFPGTLAQWFGQNGESSTF 301
Query: 448 EILNPETSVGARPW--VYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPG 503
L + S+ P +Y +YA + F F A + P+E AD L K GA +P ++PG
Sbjct: 302 GWLT-DVSLALSPGQPLYVMLYAAAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPG 360
Query: 504 KATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIEL 563
+ T +Y+ K+ G + + N F G TS+LI+V I++
Sbjct: 361 EQTAKYIDKVMTRLTLAGALYITFICLIP---EFMMVAWNVRFYFGGTSLLIVVVVIMDF 417
Query: 564 RRSYQAYNVMPSLSKALRR 582
Q + + L++
Sbjct: 418 MAQVQTHLMSHQYESVLKK 436
>TIGR_CMR|VC_2576 [details] [associations]
symbol:VC_2576 "preprotein translocase, SecY subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208
Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009306 EMBL:Y08367 EMBL:Y07817
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593
KO:K03076 ProtClustDB:PRK09204 PIR:B82057 RefSeq:NP_232204.1
ProteinModelPortal:P78283 DNASU:2615593 GeneID:2615593
KEGG:vch:VC2576 PATRIC:20084178 Uniprot:P78283
Length = 444
Score = 363 (132.8 bits), Expect = 6.0e-33, P = 6.0e-33
Identities = 117/439 (26%), Positives = 197/439 (44%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKL 210
SE++ RLF +++ R G F+P+PG D ++ + + G++ E+ + GA +
Sbjct: 17 SELKSRLFFVIGALLVFRAGSFVPIPGIDAAVLAELFEQ-QKGTIVEMFNMFSGGALERA 75
Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 270
S LGI P I ASI++Q+L + P+L +L+KEG G KI Y + +L A +A+ +
Sbjct: 76 SILALGIMPYISASIVVQLLTVVHPALAELKKEGEAGRRKISQYTRYGTLVLATFQAIGI 135
Query: 271 ACYSLPYSI--YAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGIL 328
A LP + ++ LV G M + W+ + I+E G G G S++I GI+
Sbjct: 136 AT-GLPNMVNNLVVIDQTMFTLIATVSLVTGTMFLMWLGEQITERGIGNGISILIFAGIV 194
Query: 329 TGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTE-GCRKVKLQY 387
G L K + Q + V +L L+ V ++ VV E G R++ + Y
Sbjct: 195 AG----LPKAIGQTIEQARQGELHV----LLLLLIAVLAFAVIYFVVFMERGQRRIVVNY 246
Query: 388 YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVK 447
A + ++P IN +G+ P + + ++ FP LA G
Sbjct: 247 -----AKRQQGRKVFAAQSTHLPLKINMAGVIPAIFASSIILFPGTLAQWFGQNGESSTF 301
Query: 448 EILNPETSVGARPW--VYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPG 503
L + S+ P +Y +YA + F F A + P+E AD L K GA +P ++PG
Sbjct: 302 GWLT-DVSLALSPGQPLYVMLYAAAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPG 360
Query: 504 KATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIEL 563
+ T +Y+ K+ G + + N F G TS+LI+V I++
Sbjct: 361 EQTAKYIDKVMTRLTLAGALYITFICLIP---EFMMVAWNVRFYFGGTSLLIVVVVIMDF 417
Query: 564 RRSYQAYNVMPSLSKALRR 582
Q + + L++
Sbjct: 418 MAQVQTHLMSHQYESVLKK 436
>TIGR_CMR|DET_0494 [details] [associations]
symbol:DET_0494 "preprotein translocase, SecY subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0016020 "membrane"
evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0065002 eggNOG:COG0201
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 HOGENOM:HOG000080585 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
RefSeq:YP_181238.1 ProteinModelPortal:Q3Z961 STRING:Q3Z961
GeneID:3230236 KEGG:det:DET0494 PATRIC:21608057
BioCyc:DETH243164:GJNF-494-MONOMER Uniprot:Q3Z961
Length = 438
Score = 358 (131.1 bits), Expect = 2.2e-32, P = 2.2e-32
Identities = 119/441 (26%), Positives = 199/441 (45%)
Query: 143 VLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELG 202
+L ++F ++RRRL +T ++V +R +PLPG D + QD +G++ L
Sbjct: 10 LLQAMIDAFSLPDLRRRLLITLGILVAARFIAHVPLPGVDSAAL-QDLFD-QNGALGMLD 67
Query: 203 DF--GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISL 260
F GA S LG+ P I ASI+M +L ++P L L KEG G KI + W+++
Sbjct: 68 LFSGGAMRYFSVAALGVYPYITASIIMTLLTPVIPKLTALSKEGEAGRNKINTITHWLAV 127
Query: 261 GFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSS 320
A L A + + V + +V G M M W+ + I+ G G G S
Sbjct: 128 PTAALAGYSQLLLLQREGAVAQTEPLAAVAIV-LSIVAGTMFMVWLGEQITNYGIGNGIS 186
Query: 321 LIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGC 380
LII GI+ G +T+ + L+ AG +V ++ + T V + V+ TE
Sbjct: 187 LIIFAGIVAGLPDTIGR---GLMASDQFAGLAV------YAIMALLTTVLI--VIFTEAH 235
Query: 381 RKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILAS--IL 438
R++ +QY + S E +IP +N +GM P++ + L+ P ++AS +
Sbjct: 236 RRIPVQYAQTVIRSGKMYRRG---GESHIPLRVNSAGMIPLIFASALVMLPGLVASYFMA 292
Query: 439 GS---P-FWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFD--IANLPKEIADYLNK 492
GS P FW + I + S+ VY+ +Y F +F F + ++I L +
Sbjct: 293 GSTEDPNFWNTIYNIFSSSASMPGG-LVYWGLYFFMTIIFAFFYTMVTFEQQDIPGTLQR 351
Query: 493 MGARIPNVKPGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTS 552
G +P ++PGK T +YL+ + W G + I + +
Sbjct: 352 QGGFVPGIRPGKMTDQYLSGVIGRIT-WAGALFLGFVAIMPFIAREVTGI-QVIQLSSFG 409
Query: 553 VLIIVGSIIELRRSYQAYNVM 573
+LI+VG ++ + +A VM
Sbjct: 410 MLIVVGVALDTMKQLEAQLVM 430
>TIGR_CMR|SPO_0506 [details] [associations]
symbol:SPO_0506 "preprotein translocase, SecY subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0005622 GO:GO:0065002 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
ProtClustDB:PRK09204 RefSeq:YP_165768.1 ProteinModelPortal:Q5LW37
GeneID:3194103 KEGG:sil:SPO0506 PATRIC:23374275 Uniprot:Q5LW37
Length = 455
Score = 348 (127.6 bits), Expect = 2.9e-31, P = 2.9e-31
Identities = 113/425 (26%), Positives = 198/425 (46%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVS---GSVDELGDFGAELKL 210
+++R R+ T L+++ R+G FIP+PG D + ++++ G + + GA ++
Sbjct: 21 TDLRNRILFTLGLLIVYRLGTFIPVPGIDGVAL-REFMEQAGQGIGGMVSMFTGGALGRM 79
Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 270
F LGI P I ASI++Q+L +VPSL QL+KEG G +KI Y ++ A ++A +
Sbjct: 80 GIFALGIMPYISASIIVQLLTAMVPSLEQLKKEGEQGRKKINQYTRLGTVALATVQAYGL 139
Query: 271 ACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTG 330
A SL A + T LV G M + W+ + I+ G G G SLII VGI+
Sbjct: 140 AV-SLESGDLATEPGMYFRFATMITLVGGTMFLMWLGEQITARGIGNGVSLIIFVGIIA- 197
Query: 331 YTETLYKMLSQLLVFKYTAGSSVRWWPFMLG--LLGVFTIVTMWAVVVTEGCRKVKLQYY 388
++ + L F + +G S P ++ +L V ++T + V + RK+ +QY
Sbjct: 198 ------EVPAALAQF-FASGRSGAISPAVIIAIILMVIAVIT-FVVFMERALRKIHIQYP 249
Query: 389 GFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKE 448
++ + ++P +NP+G+ P + + LL P +++ V
Sbjct: 250 RRQVGMKVYDGG-----SSHLPVKVNPAGVIPAIFASSLLLLPVTISTFSSGAANGPVMS 304
Query: 449 ILNPETSVGARPWVYY--TIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKAT 506
L G ++ + ++ FF + + F+++ P ++A L +P ++PGK T
Sbjct: 305 WLLANFGPGQPLYLLFFVSMIVFFAYFYT-FNVSFKPDDVAQNLKNQNGFVPGIRPGKKT 363
Query: 507 IEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLR-RINEGFSIGFTSVLIIVGSIIELRR 565
EYL + G +R + N F G TSVLIIV ++ +
Sbjct: 364 AEYLEYVVNRVLVLGSAYLAAVCLL----PEIMRGQFNVPFYFGGTSVLIIVSVTMDTIQ 419
Query: 566 SYQAY 570
Q++
Sbjct: 420 QVQSH 424
>NCBI_NP|NP_354903.2 [details] [associations]
symbol:prlA "preprotein translocase subunit SecY"
species:176299 "Agrobacterium fabrum str. C58" [GO:0015627 "type II
protein secretion system complex" evidence=ISS] [GO:0015628
"protein secretion by the type II secretion system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_354903
Length = 446
Score = 335 (123.0 bits), Expect = 8.2e-30, P = 8.2e-30
Identities = 118/438 (26%), Positives = 199/438 (45%)
Query: 139 RLSSVLNNAAESFFKSE-IRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGS 197
+L+S LN + +F K+E +++RL+ T +++ R+G IPLPG + Q + +G
Sbjct: 7 QLASNLNFS--TFAKAEDLKKRLWFTLAALLVYRLGTHIPLPGLNPEAYAQAFRGQANGI 64
Query: 198 VDELGDF--GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYI 255
+ F GA +++ F LGI P I ASI++Q++ +VPSL L+KEG G + I Y
Sbjct: 65 LGLFNMFAGGAVERMAIFALGIMPYISASIIVQLMTSVVPSLEALKKEGEAGRKIINQYT 124
Query: 256 WWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 315
+ ++ L+A +A + + + T L+ G M + W+ + I+ G
Sbjct: 125 RYGTVLLGTLQAYGIAVGLESGNGLVVDPGMFFRVSTVITLLGGTMFLMWLGEQITSRGI 184
Query: 316 GQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVV 375
G G SLII GI G L K L+ L T S P +L ++ V V V
Sbjct: 185 GNGISLIIFAGIAAG----LPKALAGTLELGRTGALST---PLILMVVIVAIGVIALIVF 237
Query: 376 VTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA 435
V R++ +QY ++ + + ++P +N +G+ P + + LL P+ A
Sbjct: 238 VERAQRRLLIQYPKRQVGNRMFQGDT-----SHLPLKLNTAGVIPAIFASSLLLLPATAA 292
Query: 436 SILGS---PFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNK 492
G+ P W I + + +Y + AFF F + + N PK+ AD L K
Sbjct: 293 GFAGNTNLPTWA-TSIIASLQHGQPLFMALYGLLIAFFAFFYTAI-VFN-PKDTADNLKK 349
Query: 493 MGARIPNVKPGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTS 552
G IP ++PG+ T EY+ + G + + R ++G TS
Sbjct: 350 HGGFIPGIRPGERTAEYIDYVLTRITVVGAIYLVFVCILP---ETLIARTGIPLALGGTS 406
Query: 553 VLIIVGSIIELRRSYQAY 570
+LI+V ++ Q +
Sbjct: 407 LLIVVSVTLDTVAQIQGH 424
>TAIR|locus:2054038 [details] [associations]
symbol:SCY1 "AT2G18710" species:3702 "Arabidopsis
thaliana" [GO:0009306 "protein secretion" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0015450 "P-P-bond-hydrolysis-driven protein
transmembrane transporter activity" evidence=IEA;ISS] [GO:0016020
"membrane" evidence=IEA;ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010027 "thylakoid membrane organization"
evidence=ISS] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] InterPro:IPR002208 Pfam:PF00344 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0009507
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0015031 GO:GO:0010027
GO:GO:0009535 EMBL:AC005724 eggNOG:COG0201 KO:K10956
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 EMBL:U37247 EMBL:AF424550 EMBL:AY058103
EMBL:AY065093 EMBL:BT002632 IPI:IPI00538301 PIR:A57189 PIR:F84567
RefSeq:NP_179461.1 UniGene:At.10218 ProteinModelPortal:Q38885
SMR:Q38885 IntAct:Q38885 STRING:Q38885 PaxDb:Q38885 PRIDE:Q38885
EnsemblPlants:AT2G18710.1 GeneID:816386 KEGG:ath:AT2G18710
TAIR:At2g18710 HOGENOM:HOG000080585 InParanoid:Q38885 OMA:FIMWLGE
PhylomeDB:Q38885 ProtClustDB:CLSN2683056 Genevestigator:Q38885
GermOnline:AT2G18710 InterPro:IPR026593 Uniprot:Q38885
Length = 551
Score = 349 (127.9 bits), Expect = 1.7e-29, P = 1.7e-29
Identities = 117/422 (27%), Positives = 191/422 (45%)
Query: 151 FFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDY-LSFVSGSVDELGDFGAELK 209
FFK + + + +SR+G +IPL G +R + + + ++D G +
Sbjct: 133 FFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNREAFVGNLDQNSILSTLDTFSGGGIG-R 191
Query: 210 LSFFQLGISPQIVASILMQVLCHIVPSLVQL-RKEGLDGHEKIKSYIWWISLGFAILEAV 268
L LGI P I A I+ Q+L + P L L +KEG G +KI Y + S+GFAI++A+
Sbjct: 192 LGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKILQYTRYASVGFAIVQAI 251
Query: 269 IVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGIL 328
Y PY S + V+ + LL G++ ++I + IS+ G G+SL+I I+
Sbjct: 252 GQVFYLRPY---VNDFSTEWVVSSVTLLTLGSVLTTYIGERISDLKLGNGTSLLIFTSII 308
Query: 329 TGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYY 388
+ + + ++ L G F+L +LG+ V V E RK+ L Y
Sbjct: 309 SYLPASFGRTTAEALQEGNYTGLGTIVVSFLLLVLGI--------VYVQEAERKIPLNY- 359
Query: 389 GFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKE 448
AS + + Y+PF +N +G+ P++ +T LA P+ LA G ++V
Sbjct: 360 ----ASRYTSKAGGLQKSAYLPFKVNSAGVMPIIFSTSSLALPATLARFTGISALKNVAF 415
Query: 449 ILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIE 508
L P S P + AFF + + + P ++++ L + GA IP V+PGK+T
Sbjct: 416 ALTPGGSFYL-P-TNILLIAFFNYYYTFLQLD--PDDVSEQLKRQGASIPLVRPGKSTAL 471
Query: 509 YLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRIN-EGFSIGFTSVLIIVGSIIELRRSY 567
++ + G + GF+ G TSVLI+VG + R
Sbjct: 472 FIKTVLGRISVLGSAFLAVLAAGPAVVEQITHLTAFRGFA-G-TSVLILVGCATDTARKV 529
Query: 568 QA 569
QA
Sbjct: 530 QA 531
>TIGR_CMR|GSU_2837 [details] [associations]
symbol:GSU_2837 "preprotein translocase, SecY subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0065002 Gene3D:1.10.3370.10
InterPro:IPR023201 SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
HOGENOM:HOG000080586 RefSeq:NP_953880.1 ProteinModelPortal:Q749A7
GeneID:2688725 KEGG:gsu:GSU2837 PATRIC:22028521
BioCyc:GSUL243231:GH27-2796-MONOMER Uniprot:Q749A7
Length = 435
Score = 332 (121.9 bits), Expect = 1.8e-29, P = 1.8e-29
Identities = 110/424 (25%), Positives = 201/424 (47%)
Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
+A ++ F+ E+++R+ + ++ + R+G IP PG D + + + G++ L D
Sbjct: 3 DAFQNIFRIPELKKRVLFSLGMLAVYRVGCHIPTPGIDSNALAH-FFAQARGTLLGLFDM 61
Query: 205 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLG 261
GA KL+ F LGI P I +SI+ Q+L +VPS+ +L KEG G +KI Y + ++
Sbjct: 62 FSGGALEKLTVFALGIMPYISSSIIFQLLTVVVPSIEKLSKEGESGRKKIIQYTRYGTIV 121
Query: 262 FAILEA--VIVACYSL--PYS-IYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFG 316
++++A + + S+ P + + ++T L G + W+ + +SE G G
Sbjct: 122 LSVVQALGISIGLESMRGPAGELVVPNPGWGFRLMTVITLTAGTAFIMWLGEQMSEKGIG 181
Query: 317 QGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVV 376
G SLII GI+ L L+ + K T S+ F++ L+ + + A+V
Sbjct: 182 NGISLIIFAGIVARIPTAL---LNTGRLIK-TGQLSL----FVILLVVALMFLVIAAIVY 233
Query: 377 TE-GCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA 435
E G R++ + Y K + T ++P +N +G+ P + + ++ FP+ +A
Sbjct: 234 VERGQRRLPIHYA--KRVVGLKTYGGQTS---HLPLKVNMAGVIPPIFASSIIMFPATVA 288
Query: 436 SILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANL-PKEIADYLNKMG 494
+ + P+ Q V + L P ++Y AF +F + + P ++A+ + K G
Sbjct: 289 NFINVPWVQTVAKSLTPGNLAYE---IFYV--AFIIFFCYFYTAVSFNPVDVAENVKKHG 343
Query: 495 ARIPNVKPGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVL 554
IP ++PGK T +YL ++ F G + + N F G T++L
Sbjct: 344 GYIPGIRPGKETSDYLDRVLTKLTFAGALYISAVCVLPSVL---VGKFNLPFYFGGTALL 400
Query: 555 IIVG 558
I VG
Sbjct: 401 IAVG 404
>TIGR_CMR|BA_2734 [details] [associations]
symbol:BA_2734 "preprotein translocase, SecY subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
GO:GO:0006605 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 InterPro:IPR026593 GO:GO:0043952 KO:K03076
HOGENOM:HOG000080586 OMA:HIIKIVL RefSeq:NP_845084.1
RefSeq:YP_019374.1 RefSeq:YP_028807.1 ProteinModelPortal:Q81PR7
IntAct:Q81PR7 DNASU:1087864 EnsemblBacteria:EBBACT00000009684
EnsemblBacteria:EBBACT00000013719 EnsemblBacteria:EBBACT00000019913
GeneID:1087864 GeneID:2816407 GeneID:2848183 KEGG:ban:BA_2734
KEGG:bar:GBAA_2734 KEGG:bat:BAS2547 ProtClustDB:PRK12907
BioCyc:BANT260799:GJAJ-2612-MONOMER
BioCyc:BANT261594:GJ7F-2705-MONOMER Uniprot:Q81PR7
Length = 434
Score = 320 (117.7 bits), Expect = 3.8e-28, P = 3.8e-28
Identities = 105/426 (24%), Positives = 198/426 (46%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIP-QDYLSFVSGSVDELGDFGAELKLSF 212
+EIRR++ T ++++ RIG FIP+P + ++ QD + V G ++ G GA S
Sbjct: 12 AEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKIQDQAN-VLGMLNVFGG-GALQHFSI 69
Query: 213 FQLGISPQIVASILMQVL-CHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVA 271
F +GI+P I ASI++Q+L ++P + K+G G +K + + ++ A ++A+ ++
Sbjct: 70 FAVGITPYITASIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMS 129
Query: 272 CYSLPYSIYAASHSVKHVMVTAFLLVCGAMT-----MSWICDTISESGFGQGSSLIICVG 326
Y ++ A + T +L + +T + W+ + I+ +G G G S++I G
Sbjct: 130 -YG--FNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLGEQITANGVGNGISMLIFAG 186
Query: 327 ILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLG-VFTIVTMWAVVVTEGCRKVKL 385
++ ++ Q F+ AG + + L+G V + + + + + RK+ +
Sbjct: 187 LVAAIPNVANQIYLQQ--FQ-NAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIPI 243
Query: 386 QYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH 445
QY K S + ++P +N +G+ PV+ + L P +A +
Sbjct: 244 QYA--KAVSGNNQYQGAKNT--HLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPD---SS 296
Query: 446 VKEILNPETSVGARPWVYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPG 503
V + L A P + T+Y + F F I P+++A+ L K +P ++PG
Sbjct: 297 VSKWLVANLDF-AHP-IGMTLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPCIRPG 354
Query: 504 KATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIEL 563
K+T +Y+TKI F G + + IG TS+LIIVG +E
Sbjct: 355 KSTEQYVTKILYRLTFIGAIFLGAISILPLVFTK-IATLPPSAQIGGTSLLIIVGVALET 413
Query: 564 RRSYQA 569
++ ++
Sbjct: 414 MKTLES 419
>TIGR_CMR|ECH_0428 [details] [associations]
symbol:ECH_0428 "preprotein translocase, SecY subunit"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886 GO:GO:0006605
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0005622 GO:GO:0065002
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
ProtClustDB:PRK09204 RefSeq:YP_507246.1 ProteinModelPortal:Q2GH37
STRING:Q2GH37 GeneID:3927650 KEGG:ech:ECH_0428 PATRIC:20576333
BioCyc:ECHA205920:GJNR-429-MONOMER Uniprot:Q2GH37
Length = 432
Score = 316 (116.3 bits), Expect = 3.1e-27, P = 3.1e-27
Identities = 119/433 (27%), Positives = 199/433 (45%)
Query: 150 SFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF----- 204
S+ K + +L+ T ++I R+G +IP+PG + +I D + SV LG F
Sbjct: 5 SWNKDNLLGKLWFTLFCLIIYRLGTYIPIPGINPDVI--DAV-VTKHSVGVLGIFNVFSG 61
Query: 205 GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAI 264
GA +++ F L + P IV+SI++Q+L +P L +LR+ G G KI SYI ++++ F +
Sbjct: 62 GALGRMTVFALNVMPYIVSSIIIQLLSVTIPKLNELRQNGELGRIKINSYIRYMTIFFCM 121
Query: 265 LEAVIVAC----YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSS 320
++ ++ + SI + +V L+ G M + W+ + I+++G G G S
Sbjct: 122 VQGFVILLGLEKMNTETSIVVIEPGLLFRIVGISSLLGGTMFLLWLGERINKNGIGNGVS 181
Query: 321 LIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGC 380
+II GI+ E S L+ K +V + +L LL VF + + + + +
Sbjct: 182 MIIFTGIVA---ELPGSFSSMFLLGK---NGNVPIFVILLMLL-VFFALLLLIIFIEKSY 234
Query: 381 RKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASI-LG 439
RK+ +QY ++ + S YIP IN SG+ P + LL P +A+ G
Sbjct: 235 RKILVQYPKRQVKNKLYGSS-----STYIPLKINISGVIPPIFANALLLSPITVANFHQG 289
Query: 440 SPFWQHVKEILNPETSVGARPWV--YYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARI 497
SP W + + S G ++ Y + FF F + F + KE ++ L K G +
Sbjct: 290 SP-WS---DFILMHFSSGKLLYMGCYALLIIFFAFFYTTFVFDS--KETSEILKKNGGFV 343
Query: 498 PNVKPGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIV 557
P +PG T EY + G Y I+ F++G TS LII+
Sbjct: 344 PGKRPGNGTCEYFNYVIKRLTVLGSIYLTVICIIPELI-RYNYSIS--FTLGGTSFLIII 400
Query: 558 GSIIELRRSYQAY 570
II+ Q +
Sbjct: 401 NVIIDTFSQVQTH 413
>UNIPROTKB|P0A5Z2 [details] [associations]
symbol:secY "Protein translocase subunit SecY" species:1773
"Mycobacterium tuberculosis" [GO:0005576 "extracellular region"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=TAS]
[GO:0040007 "growth" evidence=IMP] [GO:0051701 "interaction with
host" evidence=TAS] [GO:0052059 "evasion or tolerance by symbiont
of host-produced reactive oxygen species" evidence=TAS] [GO:0052572
"response to host immune response" evidence=TAS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
GO:GO:0040007 Reactome:REACT_116125 GO:GO:0005576 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0015031
EMBL:BX842574 GO:GO:0052059 TCDB:3.A.5.2.2 eggNOG:COG0201
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593 KO:K03076
ProtClustDB:PRK09204 PIR:G70822 RefSeq:NP_215246.1
RefSeq:NP_335176.1 RefSeq:YP_006514076.1 ProteinModelPortal:P0A5Z2
SMR:P0A5Z2 PRIDE:P0A5Z2 EnsemblBacteria:EBMYCT00000001582
EnsemblBacteria:EBMYCT00000069300 GeneID:13318622 GeneID:888559
GeneID:926050 KEGG:mtc:MT0756.1 KEGG:mtu:Rv0732 KEGG:mtv:RVBD_0732
PATRIC:18123397 TubercuList:Rv0732 HOGENOM:HOG000080586
Uniprot:P0A5Z2
Length = 441
Score = 319 (117.4 bits), Expect = 3.9e-27, P = 3.9e-27
Identities = 95/377 (25%), Positives = 180/377 (47%)
Query: 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF------GAEL 208
++RR++ T ++++ R+G +P PG + + Q +G ++ GA L
Sbjct: 13 DLRRKILFTLGIVILYRVGAALPSPGVNFPNVQQCIKEASAGEAGQIYSLINLFSGGALL 72
Query: 209 KLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAV 268
KL+ F +G+ P I ASI++Q+L ++P +LRKEG G K+ Y ++++ AIL+A
Sbjct: 73 KLTVFAVGVMPYITASIIVQLLTVVIPRFEELRKEGQAGQSKMTQYTRYLAIALAILQAT 132
Query: 269 IVACYSLPYSIYA-------ASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSL 321
+ + + A S+ ++V ++ GA + W+ + I+E G G G SL
Sbjct: 133 SIVALAANGGLLQGCSLDIIADQSIFTLVVIVLVMTGGAALVMWMGELITERGIGNGMSL 192
Query: 322 IICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCR 381
+I VGI +L +TA + ++ ++GV V V +G R
Sbjct: 193 LIFVGIAARIPAEGQSILESRGGVVFTAVCAAA----LIIIVGV--------VFVEQGQR 240
Query: 382 KVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSIL------- 434
++ +QY ++ T Y+P +N +G+ PV+ + L+ P ++
Sbjct: 241 RIPVQY-AKRMVGRRMYGGTST----YLPLKVNQAGVIPVIFASSLIYIPHLITQLIRSG 295
Query: 435 ASILGSPFW-QHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKM 493
+ ++G+ +W + V L+ +++ +Y+ + FF + + I P E AD + K
Sbjct: 296 SGVVGNSWWDKFVGTYLSDPSNL-VYIGIYFGLIIFFTYFY--VSITFNPDERADEMKKF 352
Query: 494 GARIPNVKPGKATIEYL 510
G IP ++PG+ T +YL
Sbjct: 353 GGFIPGIRPGRPTADYL 369
>TIGR_CMR|BA_0130 [details] [associations]
symbol:BA_0130 "preprotein translocase, SecY subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0009306 "protein
secretion" evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven
protein transmembrane transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0065002
Gene3D:1.10.3370.10 InterPro:IPR023201 SUPFAM:SSF103491
TIGRFAMs:TIGR00967 OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952
KO:K03076 ProtClustDB:PRK09204 HOGENOM:HOG000080586
RefSeq:NP_842698.1 RefSeq:YP_016735.2 RefSeq:YP_026416.1
ProteinModelPortal:Q81VR0 IntAct:Q81VR0 DNASU:1086476
EnsemblBacteria:EBBACT00000012418 EnsemblBacteria:EBBACT00000015283
EnsemblBacteria:EBBACT00000022223 GeneID:1086476 GeneID:2818223
GeneID:2850579 KEGG:ban:BA_0130 KEGG:bar:GBAA_0130 KEGG:bat:BAS0130
BioCyc:BANT260799:GJAJ-141-MONOMER
BioCyc:BANT261594:GJ7F-143-MONOMER Uniprot:Q81VR0
Length = 433
Score = 315 (115.9 bits), Expect = 8.0e-27, P = 8.0e-27
Identities = 103/423 (24%), Positives = 191/423 (45%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIP-QDYLSFVSGSVDELGDFGAELKLSF 212
+EIRR++ T ++++ RIG FIP+P + ++ QD L+ + G ++ G GA S
Sbjct: 12 AEIRRKILFTLAMLIVFRIGTFIPVPFTNGDVLKAQDQLNAL-GILNTFGG-GALKNFSI 69
Query: 213 FQLGISPQIVASILMQVL-CHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEA--VI 269
F +GI P I ASI++Q+L +VP + K+G G K+ + + ++ A ++ +
Sbjct: 70 FAMGIMPYITASIIVQLLQMDVVPKFSEWAKQGEMGRRKLTQFTRYFTIVLAFIQGFGMS 129
Query: 270 VACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILT 329
+ + + + A +L G + W+ + I+ G G G S++I GI
Sbjct: 130 IGFNGMVGGQLILNPGWSTYLYIATVLTAGTAFLMWLGEQITAKGVGNGISILIFGGIAA 189
Query: 330 GYTETLYKMLSQLL--VFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQY 387
+ ++ Q + S V+ L LL V ++ + + + + RK+ +QY
Sbjct: 190 AIPSVISQVYQQQFQNIGDQLFMSIVK---VALILLAVLAVI-VGVIFIQQAVRKIPIQY 245
Query: 388 YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVL-TTTYLLAFPSILASILGSPFWQHV 446
K + + ++P +N +G+ PV+ ++L+ P+I Q +
Sbjct: 246 A--KRVTGGNGGYAGAQ-NTHLPLKVNSAGVIPVIFAVSFLITPPTIAQFFPKHDVSQWI 302
Query: 447 KEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKAT 506
N VG +Y + F + + + N P+++++ LNK G +P ++PGK T
Sbjct: 303 IANFNYSHPVGMI--IYVALIVAFTYFYAFVQV-N-PEQMSENLNKQGGYVPGIRPGKNT 358
Query: 507 IEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRS 566
+YLTKI F G L + IG TS+LI+VG +E +
Sbjct: 359 EQYLTKILYRLTFVGSIFLAAIAILPVIFTK-LGNLPPSAQIGGTSMLIVVGVALETMKQ 417
Query: 567 YQA 569
++
Sbjct: 418 LES 420
>TIGR_CMR|APH_0299 [details] [associations]
symbol:APH_0299 "preprotein translocase, SecY subunit"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005887 "integral
to plasma membrane" evidence=ISS] [GO:0009306 "protein secretion"
evidence=ISS] [GO:0015450 "P-P-bond-hydrolysis-driven protein
transmembrane transporter activity" evidence=ISS] HAMAP:MF_01465
InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755
PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021 GO:GO:0005886
GO:GO:0006605 GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0065002 eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
ProtClustDB:PRK09204 RefSeq:YP_504911.1 ProteinModelPortal:Q2GL40
STRING:Q2GL40 GeneID:3930869 KEGG:aph:APH_0299 PATRIC:20949172
BioCyc:APHA212042:GHPM-329-MONOMER Uniprot:Q2GL40
Length = 434
Score = 310 (114.2 bits), Expect = 6.1e-26, P = 6.1e-26
Identities = 109/413 (26%), Positives = 186/413 (45%)
Query: 158 RRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFFQL 215
+R T +++ R+G +IP+PG + +I + +G + F GA +++ F L
Sbjct: 14 KRFGFTLFALIVYRLGTYIPIPGINLGVIGEIVSGHTTGVLGIFNVFSGGALGRMTIFAL 73
Query: 216 GISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC--- 272
+ P IV+SI++Q+L VP+L ++R+EG G KI SY ++++ F I++ +++
Sbjct: 74 NVMPYIVSSIMVQLLSVAVPALNEMRQEGELGRAKINSYTRYLTVVFCIVQGLMILLGLE 133
Query: 273 -YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGY 331
+ + + +V ++ G M + W+ + I+ G G G SLII VGI++
Sbjct: 134 RMNTAEVMVVLDPGLTFRVVGISSMLAGTMFLLWLGERINLKGIGNGISLIIFVGIISEL 193
Query: 332 TETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFK 391
+L S ++ K S + M L +F ++ + RKV +QY +
Sbjct: 194 PSSLS---SVFMLGKRGELSGFAVFLVMASFLALFLLI----IFFERSYRKVLVQYPKRQ 246
Query: 392 LASAA-REDSPITEVEPYIPFNINPSGM-QPVLTTTYLLAFPSILASILGSPFWQHVKEI 449
+ DS Y+P IN SG+ P+ LL+ ++ GS + V
Sbjct: 247 VGGRFYNSDSS------YMPLKINISGVIPPIFANALLLSLMTLAKFSAGSSWSDFVLRY 300
Query: 450 LNPETSVGARPWVYYTIYAFFVFLFN--IFDIANLPKEIADYLNKMGARIPNVKPGKATI 507
+ E+ + VY + FF F + +FD KE A+ L K IP +PGK+T+
Sbjct: 301 FHTESVLYIV--VYVALIMFFTFFYTSLVFD----SKETAEMLKKNSGFIPGKRPGKSTM 354
Query: 508 EYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSI 560
EY ++ G HY F++G TS LIIV I
Sbjct: 355 EYFDQVIRRLTVIGAVYLSVVCVVPEVVRHYCA---VSFTLGGTSFLIIVNVI 404
>UNIPROTKB|P25014 [details] [associations]
symbol:secY "Protein translocase subunit SecY" species:2762
"Cyanophora paradoxa" [GO:0033115 "cyanelle thylakoid membrane"
evidence=IDA] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906
GO:GO:0016021 GO:GO:0015031 GO:GO:0009528 Gene3D:1.10.3370.10
InterPro:IPR023201 SUPFAM:SSF103491 TIGRFAMs:TIGR00967
InterPro:IPR026593 EMBL:M30487 EMBL:U30821 PIR:T06875
RefSeq:NP_043187.1 ProteinModelPortal:P25014 TCDB:3.A.5.6.1
GeneID:801593 ProtClustDB:CHL00161 GO:GO:0033115 Uniprot:P25014
Length = 492
Score = 312 (114.9 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 109/384 (28%), Positives = 189/384 (49%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPG----FDRRLIPQDYLSFVSGSVDELGDFGAELK 209
SEIR+R T LI + RIG F+P+PG FD Q+ ++ L GA L+
Sbjct: 48 SEIRKRAISTLCLIFLIRIGTFLPIPGTALNFDLESFQQNNSRNELANILNLLSGGAFLE 107
Query: 210 LSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLD-GHEKIKSYIWWISLGFAILEAV 268
+ FF LGI P + AS +QVL I+PSL + +KE + + K + ++++ +A ++++
Sbjct: 108 IGFFTLGILPYMNASFFLQVLTKILPSLERFQKEQEEIAQREFKKWTRYLTVIWAFIQSI 167
Query: 269 IVA-CYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGI 327
+++ + PY++ V+V L GA+ + I + I+E G GSSL+I + I
Sbjct: 168 VISWIWIRPYALNWDFFLGLKVVVA---LTLGAVIVMIIAEQITEIGLTNGSSLLIFINI 224
Query: 328 LTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQ 386
+ ++ ++ + + + + SS+ +L L + +TM+ ++ + E R V +
Sbjct: 225 IARIPNSIEQLFNSNINWTFPMISSL-----ILSLS--LSFITMFVIIGLQESGRPVPV- 276
Query: 387 YYGFKLASAAREDSPITEVE-----PYIPFNINPSGMQPVL--TTTYLLAFPSILASILG 439
+ A + + PITE E YI F + P+G+ PV+ +T + LA P+ +L
Sbjct: 277 LIARQEAERQKFNEPITEAERRKTQAYIFFQLLPAGIMPVIFASTIFDLALPAFTNFLLQ 336
Query: 440 SPFW--QHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARI 497
W Q +K P S+ + + Y F + + + N PK +A+ LN M A I
Sbjct: 337 QGNWGYQLIKSF--PFNSL-FKDFCYLITIMLFSSNYALTIMIN-PKTLAENLNSMNALI 392
Query: 498 PNVKPGKATIEYLTKIQASTRFWG 521
P V+PG T Y ++ F G
Sbjct: 393 PGVRPGSETKVYSEQLIHRLNFIG 416
>TIGR_CMR|CJE_1856 [details] [associations]
symbol:CJE_1856 "preprotein translocase, SecY subunit"
species:195099 "Campylobacter jejuni RM1221" [GO:0006886
"intracellular protein transport" evidence=ISS] [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0016020 "membrane"
evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344
PIRSF:PIRSF004557 PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906
GO:GO:0016021 GO:GO:0005886 GO:GO:0006605 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0065002
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
PIR:D81266 RefSeq:YP_179826.1 ProteinModelPortal:Q5HSA9
STRING:Q5HSA9 GeneID:3232483 KEGG:cjr:CJE1856 PATRIC:20045544
OMA:HIIKIVL BioCyc:CJEJ195099:GJC0-1895-MONOMER Uniprot:Q5HSA9
Length = 421
Score = 291 (107.5 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 88/368 (23%), Positives = 179/368 (48%)
Query: 156 IRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFF 213
+ ++ +T + R+ ++P+PG + +I + + + + ++ F GA + S
Sbjct: 5 LTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQNNALGLFNVFSGGAAERFSII 64
Query: 214 QLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC- 272
LGI P I ASI+M++L P++ +++KE D +K I + ++ +++++ VA
Sbjct: 65 SLGIMPYITASIIMELLAATFPNIGKMKKER-DSMQKYMQIIRYATIVITLVQSIGVAIG 123
Query: 273 -YSLPYSIYAASHSVKH----VMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGI 327
SL A + V+ + + A ++ G M + W+ + I++ G G G SLII GI
Sbjct: 124 LQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLMWLGEQITQRGIGNGISLIIFAGI 183
Query: 328 LTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTE-GCRKVKLQ 386
++G + + Q+ +G F + L ++T+ ++ E G R++ +
Sbjct: 184 VSGIPRAISGTVGQI-----NSGEMNFLTAFAIFAL---ILITIGVIIYIELGERRIPIS 235
Query: 387 YYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHV 446
Y + ++ I YIP +N SG+ P + + +L FP+ + +P+ Q +
Sbjct: 236 YS--RKVVMQNQNKRIMN---YIPIKLNLSGVIPPIFASAILMFPTTILQTSTNPYLQAI 290
Query: 447 KEILNPETSV-GARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKA 505
+ LNP + +++ +A+F + +F+ K+IA+ L K G IP ++PG+
Sbjct: 291 NDFLNPNGYLFHVLTFLFVIFFAYF-YASIVFNA----KDIAENLKKQGGFIPGIRPGEG 345
Query: 506 TIEYLTKI 513
T YL ++
Sbjct: 346 TSSYLNEV 353
>TIGR_CMR|CHY_2289 [details] [associations]
symbol:CHY_2289 "preprotein translocase, SecY subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006886 "intracellular protein transport" evidence=ISS]
[GO:0008565 "protein transporter activity" evidence=ISS]
HAMAP:MF_01465 InterPro:IPR002208 Pfam:PF00344 PIRSF:PIRSF004557
PROSITE:PS00755 PROSITE:PS00756 PANTHER:PTHR10906 GO:GO:0016021
GO:GO:0005886 GO:GO:0006605 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0065002 eggNOG:COG0201 Gene3D:1.10.3370.10
InterPro:IPR023201 SUPFAM:SSF103491 TIGRFAMs:TIGR00967 OMA:FIMWLGE
InterPro:IPR026593 GO:GO:0043952 KO:K03076 ProtClustDB:PRK09204
HOGENOM:HOG000080586 RefSeq:YP_361098.1 ProteinModelPortal:Q3A9T6
STRING:Q3A9T6 GeneID:3727431 KEGG:chy:CHY_2289 PATRIC:21277649
BioCyc:CHYD246194:GJCN-2288-MONOMER Uniprot:Q3A9T6
Length = 419
Score = 270 (100.1 bits), Expect = 5.9e-21, P = 5.9e-21
Identities = 93/347 (26%), Positives = 167/347 (48%)
Query: 144 LNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLS-FVSGSVDELG 202
L NA ++ E++ RL T +++++ RIG IP+PG + + + S + G D +
Sbjct: 5 LRNAMKA---KELKSRLLFTLLMLLVFRIGAHIPVPGINLARMEELIQSGTILGFFDVIS 61
Query: 203 DFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGF 262
GA K + F + I+P I ASI+MQ+L ++P L +L KEG +G KI Y+ + ++
Sbjct: 62 G-GAFKKFTIFAMSITPYINASIIMQLLTVVIPYLEKLAKEGEEGRRKITEYVRYGTVIL 120
Query: 263 AILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLI 322
A ++ +A L ++ + + + A L G + W+ + I+E G G G SLI
Sbjct: 121 AFIQGFFMAI-GLRSALN--NPGILTYLYVALALTAGTAFLMWLGEQITEKGIGNGISLI 177
Query: 323 ICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRK 382
I GI++ ++ ++ + +AG++ +L ++ V I + VVV E R+
Sbjct: 178 IFAGIVSRIPGSIKTIIDYV-----SAGTANILNVLILAVIAVAAIYAV--VVVNEAQRR 230
Query: 383 VKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG-SP 441
+ +QY ++ T ++P +N +G+ P++ + LL FP +A +
Sbjct: 231 IPVQY-AKRVVGRRVYGGQST----HLPIKVNQAGVIPIIFASSLLMFPITIAGWFPQNS 285
Query: 442 FWQHVKEILNPETSVGARPWVYYTI---YAFFVFLFNIFDIA-NLPK 484
F Q V + T + + I Y + + N DIA NL K
Sbjct: 286 FAQWVLKYFGWGTVINTILYALLIIGFTYFYTAIIMNPLDIAENLKK 332
Score = 219 (82.2 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 81/339 (23%), Positives = 149/339 (43%)
Query: 240 LRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHS--VKHVMVTAFLLV 297
L K +G E + ++ G IL + + + + +A ++ + + A L
Sbjct: 95 LEKLAKEGEEGRRKITEYVRYGTVIL--AFIQGFFMAIGLRSALNNPGILTYLYVALALT 152
Query: 298 CGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWP 357
G + W+ + I+E G G G SLII GI++ ++ ++ + +AG++
Sbjct: 153 AGTAFLMWLGEQITEKGIGNGISLIIFAGIVSRIPGSIKTIIDYV-----SAGTANILNV 207
Query: 358 FMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSG 417
+L ++ V I + VVV E R++ +QY ++ T ++P +N +G
Sbjct: 208 LILAVIAVAAIYAV--VVVNEAQRRIPVQY-AKRVVGRRVYGGQST----HLPIKVNQAG 260
Query: 418 MQPVLTTTYLLAFPSILASILG-SPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNI 476
+ P++ + LL FP +A + F Q V + T + +YA + F
Sbjct: 261 VIPIIFASSLLMFPITIAGWFPQNSFAQWVLKYFGWGTVINT------ILYALLIIGFTY 314
Query: 477 FDIANL--PKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGXXXXXXXXXXXX 534
F A + P +IA+ L K G IP ++PG+ T EY+ K+ + F G
Sbjct: 315 FYTAIIMNPLDIAENLKKYGGFIPGIRPGRPTAEYIDKVMSRVTFAGAVFLAFIAILPNI 374
Query: 535 XDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVM 573
R N F G T++LI+VG ++ + ++Y +M
Sbjct: 375 VMAIARIPNVTF--GGTALLIVVGVALDTMKQLESYLLM 411
>TIGR_CMR|NSE_0285 [details] [associations]
symbol:NSE_0285 "preprotein translocase, SecY subunit"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0008565
"protein transporter activity" evidence=ISS] [GO:0009306 "protein
secretion" evidence=ISS] HAMAP:MF_01465 InterPro:IPR002208
Pfam:PF00344 PIRSF:PIRSF004557 PROSITE:PS00755 PANTHER:PTHR10906
GO:GO:0016021 GO:GO:0005886 GO:GO:0006605 GO:GO:0005622
GO:GO:0065002 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0201 Gene3D:1.10.3370.10 InterPro:IPR023201
SUPFAM:SSF103491 TIGRFAMs:TIGR00967 HOGENOM:HOG000080585
OMA:FIMWLGE InterPro:IPR026593 GO:GO:0043952 KO:K03076
RefSeq:YP_506176.1 ProteinModelPortal:Q2GEC0 STRING:Q2GEC0
GeneID:3932107 KEGG:nse:NSE_0285 PATRIC:22680663
ProtClustDB:CLSK2527980 BioCyc:NSEN222891:GHFU-312-MONOMER
Uniprot:Q2GEC0
Length = 436
Score = 232 (86.7 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 93/368 (25%), Positives = 165/368 (44%)
Query: 151 FFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDY-LSFVSGSVDELGDF--GAE 207
F ++ RL V +++ RIG FI LP + + + + + SG + F GA
Sbjct: 10 FSSKDLFHRLCFLLVALLVYRIGTFITLPSVNPAHVSEIFSANLSSGIIGMFNTFSGGAL 69
Query: 208 LKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEA 267
+++ F L + P IV+SI++Q+ ++ S ++ E ++ ++ Y ++L A +
Sbjct: 70 GRMTLFALNVMPYIVSSIVVQIFFSMLKSEGKVSAEFMN-ESRLSFYSKLVALFLAFFQG 128
Query: 268 -VIVACYSLPYSIYAASHSVKHVM-VTAFL-LVCGAMTMSWICDTISESGFGQGSSLIIC 324
+IVA + + ++ T+ L LVCG ++ W+ I+ G G G SLII
Sbjct: 129 FIIVAGLERTKAFVGGNEEFYSLLKYTSVLTLVCGTFSLIWLGQQINSRGIGNGMSLIIF 188
Query: 325 VGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVK 384
GI+ + S + + GS + L LL VF + + V+V + +
Sbjct: 189 AGIVAEMPAIFGNLFSGI----GSPGSGILGIFVSLSLL-VFVVFLV--VLVERASKNIP 241
Query: 385 LQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQ 444
+ Y + + D+ IP IN SG+ P + L+ FP LA+
Sbjct: 242 VHYPRRRTWGSTHGDAASN-----IPVKINVSGVIPPIFANALILFPLTLANFSAE---S 293
Query: 445 HVKEILNPETSVGARPW--VYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKP 502
H+ E + SVG + ++ + FF F ++ F + N EI+D L K A + +P
Sbjct: 294 HLGEFIIRYFSVGQPLYFLLHSCLLVFFCFFYSDF-VFNTT-EISDSLKKGEAIVAGRRP 351
Query: 503 GKATIEYL 510
G +T +L
Sbjct: 352 GISTKRHL 359
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.139 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 585 572 0.00080 120 3 11 22 0.47 33
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 616 (65 KB)
Total size of DFA: 304 KB (2156 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.68u 0.10s 47.78t Elapsed: 00:00:02
Total cpu time: 47.69u 0.10s 47.79t Elapsed: 00:00:02
Start: Sat May 11 06:12:15 2013 End: Sat May 11 06:12:17 2013