Query 007921
Match_columns 585
No_of_seqs 127 out of 1090
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 17:07:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0201 SecY Preprotein transl 100.0 1E-89 2.2E-94 737.4 40.4 416 143-582 5-433 (436)
2 PRK09204 secY preprotein trans 100.0 1.1E-88 2.3E-93 734.7 42.2 409 150-580 8-426 (426)
3 PRK12907 secY preprotein trans 100.0 1.4E-88 3E-93 733.0 43.1 413 152-584 10-434 (434)
4 CHL00161 secY preprotein trans 100.0 7.7E-86 1.7E-90 711.1 40.0 404 149-580 3-416 (417)
5 PRK08568 preprotein translocas 100.0 1E-83 2.2E-88 701.4 41.4 410 134-581 3-458 (462)
6 PRK12417 secY preprotein trans 100.0 8.1E-84 1.8E-88 691.4 39.5 391 149-582 5-404 (404)
7 TIGR00967 3a0501s007 preprotei 100.0 1.3E-83 2.9E-88 692.7 37.3 403 157-576 1-410 (410)
8 PTZ00219 Sec61 alpha subunit; 100.0 6.1E-79 1.3E-83 664.9 36.2 408 132-573 5-469 (474)
9 TIGR02920 acc_sec_Y2 accessory 100.0 3E-78 6.4E-83 647.9 37.8 385 155-580 1-395 (395)
10 PF00344 SecY: SecY translocas 100.0 4.4E-70 9.4E-75 576.7 28.3 334 211-565 1-346 (346)
11 KOG1373 Transport protein Sec6 100.0 5.7E-62 1.2E-66 500.1 25.5 408 129-575 1-469 (476)
12 PF10559 Plug_translocon: Plug 93.2 0.033 7.2E-07 40.3 0.6 34 168-209 1-34 (35)
13 PF04923 Ninjurin: Ninjurin ; 52.1 40 0.00087 30.3 5.9 44 219-262 46-90 (104)
14 CHL00161 secY preprotein trans 37.6 2.8E+02 0.0061 30.8 11.0 25 314-339 383-407 (417)
15 PF08006 DUF1700: Protein of u 33.9 1.4E+02 0.003 28.9 7.0 33 481-514 51-83 (181)
16 PF12263 DUF3611: Protein of u 33.3 4.3E+02 0.0093 26.2 10.3 73 460-537 57-132 (183)
17 PRK12907 secY preprotein trans 29.5 2.4E+02 0.0052 31.6 8.8 26 313-339 396-421 (434)
18 PRK10582 cytochrome o ubiquino 25.8 2.3E+02 0.005 25.8 6.5 50 256-305 47-100 (109)
19 PF10066 DUF2304: Uncharacteri 25.2 3.4E+02 0.0073 24.5 7.5 57 520-579 38-94 (115)
20 PRK09204 secY preprotein trans 24.8 5.5E+02 0.012 28.6 10.6 24 315-339 394-417 (426)
21 TIGR02847 CyoD cytochrome o ub 23.9 2.9E+02 0.0063 24.5 6.6 50 256-305 36-89 (96)
22 PRK12417 secY preprotein trans 23.0 5.6E+02 0.012 28.4 10.1 24 315-339 370-393 (404)
23 PF10066 DUF2304: Uncharacteri 22.1 5.1E+02 0.011 23.3 8.1 32 305-336 51-83 (115)
24 PF07330 DUF1467: Protein of u 21.9 1.1E+02 0.0024 26.6 3.5 39 493-531 32-70 (85)
No 1
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-89 Score=737.43 Aligned_cols=416 Identities=29% Similarity=0.454 Sum_probs=344.6
Q ss_pred hhhhhhhhh-hhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccchhhcCchhHH
Q 007921 143 VLNNAAESF-FKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQI 221 (585)
Q Consensus 143 ~~~~~~~~~-~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SLfsLGI~PyI 221 (585)
..|++..+. +.++++||++||++++++||+|++||+||+|.++..+.+.+...+.++.+...||++++|+|+|||+|||
T Consensus 5 ~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~PyI 84 (436)
T COG0201 5 LLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIMPYI 84 (436)
T ss_pred hhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccHHHH
Confidence 457788876 4699999999999999999999999999999987654332221111111111256799999999999999
Q ss_pred HHHHHHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhcccc--ccccccchhHHHHHHHHHHHH
Q 007921 222 VASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS--IYAASHSVKHVMVTAFLLVCG 299 (585)
Q Consensus 222 tAsII~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~--~~~~~~~~~~~~~ivl~LvaG 299 (585)
|||||||||+...|.++|++||+|+||+|+|++|||+|+++|++||++++......+ ......+...+++++++|++|
T Consensus 85 TASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~G 164 (436)
T COG0201 85 TASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAG 164 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHH
Confidence 999999999877999999999999999999999999999999999999975432111 111122355688999999999
Q ss_pred HHHHHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCC-CcchHHHHHHHHHHHHHHHHHhhheec
Q 007921 300 AMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGS-SVRWWPFMLGLLGVFTIVTMWAVVVTE 378 (585)
Q Consensus 300 s~il~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~-~~~~~~~li~~l~i~llii~~iv~v~~ 378 (585)
+|++|||||+|||||+|||+||+|++||++++|+.+.+...... .+. ..++... +..+..+++++++++|+|+
T Consensus 165 t~~lmwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~-----~~~~~~~~l~~-l~~~~~~l~ii~~vvyve~ 238 (436)
T COG0201 165 TMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALP-----TGALFLSILFL-LLLVLLTLAIIFLVVYVEQ 238 (436)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHh-----cchhHHHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887554331 221 1222211 2233345556777999999
Q ss_pred eEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCCh-------hHHHHHHHcC
Q 007921 379 GCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-------FWQHVKEILN 451 (585)
Q Consensus 379 ~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~~-------~~~~l~~~l~ 451 (585)
++|||||||+|++ ..+++++|+|+|+||||+||+||||+++++|.+++++++++ |...+..+++
T Consensus 239 ~~r~IPI~y~~~~---------~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~ 309 (436)
T COG0201 239 ARRRIPIQYAKRQ---------SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALS 309 (436)
T ss_pred eEEEeehhhhhhh---------hcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhcc
Confidence 9999999999753 23368899999999999999999999999999999999622 3345666666
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHH
Q 007921 452 PETSVGARPWVYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILA 529 (585)
Q Consensus 452 p~~sl~~~~~i~~ily~~~ii~Fs~f~--i~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA 529 (585)
+. .|+|..+|++++++||||| +++||||+||||||+|.+|||+||||+|+|||+|+++|+|++||++++++|
T Consensus 310 ~~------~~~y~~~y~~lii~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~ia 383 (436)
T COG0201 310 PG------SPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIA 383 (436)
T ss_pred CC------cHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 4899999999999999999 556899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 007921 530 TSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 582 (585)
Q Consensus 530 ~lP~i~~~~~~~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~ 582 (585)
++|++++...+ ..+.+||||+||+||+++|+++|+++|+.+++|+.+.+.
T Consensus 384 ilp~l~~~~~~---~~~~~gGTslLI~V~V~l~~~~qi~~~l~~~~Y~~~~~~ 433 (436)
T COG0201 384 ILPELLGTAGG---VPFYFGGTSLLIVVGVALDTYEQIEAELLMEKYPGLRRI 433 (436)
T ss_pred HHHHHHHHhcC---CcccccCeeeeeehHHHHHHHHHHHHHHHHhhchhHHhh
Confidence 99999998643 347889999999999999999999999999999988554
No 2
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.1e-88 Score=734.68 Aligned_cols=409 Identities=31% Similarity=0.532 Sum_probs=338.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccc-c--ccccccchhhcCchhHHHHHHH
Q 007921 150 SFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASIL 226 (585)
Q Consensus 150 ~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~-~--ga~~~~SLfsLGI~PyItAsII 226 (585)
.++++++++|++||++++++||+|++||+||+|.++..+.+ +...+++.++.+ + ||++++|+|+|||+|||||||+
T Consensus 8 ~~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~-~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyItAsIi 86 (426)
T PRK09204 8 AFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLF-DQQSGGILGLFNLFSGGALSRFSIFALGIMPYITASII 86 (426)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHH-hhccccHHHHHHHHcccchhcccHHHhCcHHHHHHHHH
Confidence 45679999999999999999999999999999997653321 111123444433 2 4679999999999999999999
Q ss_pred HHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhcccc----ccccccchhHHHHHHHHHHHHHHH
Q 007921 227 MQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS----IYAASHSVKHVMVTAFLLVCGAMT 302 (585)
Q Consensus 227 ~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~----~~~~~~~~~~~~~ivl~LvaGs~i 302 (585)
||+|+.++|+++|++||||+||+|+|++|||+|+++|++||++++.....+. .....++....++++++|++|+|+
T Consensus 87 ~QLL~~~ip~l~~l~kege~gr~k~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~Gs~i 166 (426)
T PRK09204 87 MQLLTVVIPKLEELKKEGEAGRRKINQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMF 166 (426)
T ss_pred HHHHHHHhhhHHHHhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999864322221 111112344577889999999999
Q ss_pred HHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHhhheeceEEE
Q 007921 303 MSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRK 382 (585)
Q Consensus 303 l~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~~~~~~~li~~l~i~llii~~iv~v~~~~rr 382 (585)
++||||+|||||+|||+|++|++||++++|+++.+.++.. .++ ..++. .++..++++++++++++++|+++||
T Consensus 167 ~~wL~e~It~~GiGnGiSliI~~gI~~~ip~~~~~~~~~~-----~~~-~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~r 239 (426)
T PRK09204 167 LMWLGEQITERGIGNGISLIIFAGIVAGLPSAIGQTFELA-----RTG-SLSIL-VFLLLIVLFLAVIAFVVFVEQAQRR 239 (426)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHh-----ccC-cchHH-HHHHHHHHHHHHHHHHheeeeeEEE
Confidence 9999999999999999999999999999999988766432 111 12222 2222344455667788999999999
Q ss_pred EEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCCh-hHHHHHHHcCCCCCCCCcch
Q 007921 383 VKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-FWQHVKEILNPETSVGARPW 461 (585)
Q Consensus 383 IPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~~-~~~~l~~~l~p~~sl~~~~~ 461 (585)
||+||++.. .+++ ..+++++|+|+|+||+|+||+|||++++++|++++++.+++ |...+.++++|. .|
T Consensus 240 IPi~~~~~~--~~~~---~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~------~~ 308 (426)
T PRK09204 240 IPVQYAKRQ--VGRK---MYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYLSPG------SP 308 (426)
T ss_pred EEEEehhhh--cccc---ccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhCCC------Ch
Confidence 999999741 1121 23467899999999999999999999999999999985444 556677788764 37
Q ss_pred HHHHHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007921 462 VYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYL 539 (585)
Q Consensus 462 i~~ily~~~ii~Fs~f~--i~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~ 539 (585)
+|.++|++++++||+|| ++.||||+||||||||++|||+||||+|+|||+|+++|++++||++++++|++|++++.+.
T Consensus 309 ~~~~~y~~lii~Fs~fy~~i~~~p~~iAe~l~k~g~~IpGiRpG~~T~~yL~~~i~r~t~~Ga~~l~~ia~~p~~~~~~~ 388 (426)
T PRK09204 309 LYILLYALLIIFFTFFYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALLPEILQNAL 388 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999 4469999999999999999999999999999999999999999999999999999998763
Q ss_pred hccCCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007921 540 RRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKAL 580 (585)
Q Consensus 540 ~~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l 580 (585)
+ .++++||||++|+||+++|++||+|+++.+++|++++
T Consensus 389 ~---~~~~~ggTslLI~Vgv~l~~~~qi~~~~~~~~Y~~~~ 426 (426)
T PRK09204 389 G---VPFYFGGTSLLIVVGVALDTMKQIESQLMSRQYEGFL 426 (426)
T ss_pred C---cccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 2 3567899999999999999999999999999999763
No 3
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.4e-88 Score=733.02 Aligned_cols=413 Identities=24% Similarity=0.398 Sum_probs=328.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccc-c--ccccccchhhcCchhHHHHHHHHH
Q 007921 152 FKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASILMQ 228 (585)
Q Consensus 152 ~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~-~--ga~~~~SLfsLGI~PyItAsII~Q 228 (585)
+++|+|+|++||++++++||+|++||+||+|.++.+. .+. +.+..+.+ + |+++++|+|+|||+|||||||+||
T Consensus 10 ~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~--~~~--~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII~Q 85 (434)
T PRK12907 10 RVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKV--QDQ--ANVLGMLNVFGGGALQHFSIFAVGITPYITASIIVQ 85 (434)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhh--hhh--hhHHHHHHHHhccccccChHHHHccHHHHHHHHHHH
Confidence 3689999999999999999999999999999875421 111 11111111 2 567999999999999999999999
Q ss_pred HHHh-HhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhcccc-c-cccccchhHHHHHHHHHHHHHHHHHH
Q 007921 229 VLCH-IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS-I-YAASHSVKHVMVTAFLLVCGAMTMSW 305 (585)
Q Consensus 229 LL~~-~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~-~-~~~~~~~~~~~~ivl~LvaGs~il~W 305 (585)
||+. .+|++++++||||+||||+|++|||+|+++|++||++++....... . .....++...+.++++|++|+|+++|
T Consensus 86 LL~~~~~p~l~~l~kege~gr~k~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~W 165 (434)
T PRK12907 86 LLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLW 165 (434)
T ss_pred HHHhccCccHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHHHHHH
Confidence 9965 6999999999999999999999999999999999999864321110 0 01112233466778999999999999
Q ss_pred HHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCC--cchHHHHHHHHHHHHHHHHHhhheeceEEEE
Q 007921 306 ICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSS--VRWWPFMLGLLGVFTIVTMWAVVVTEGCRKV 383 (585)
Q Consensus 306 L~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~--~~~~~~li~~l~i~llii~~iv~v~~~~rrI 383 (585)
|||+|||||+|||+|++|++||++++|+.+.+.+..... ..+.. .+.. ....++.++++++++++++|+++|||
T Consensus 166 L~e~It~~GIGnGiSliI~~gIv~~~p~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~i~~~v~v~~~~rrI 241 (434)
T PRK12907 166 LGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQ---NAGDQLFMHII-KMLLIGLVILAIVVGVIYIQQAVRKI 241 (434)
T ss_pred HHHHHhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHhh---ccCchhhhhHH-HHHHHHHHHHHHHHHHhheeeeeEEE
Confidence 999999999999999999999999999887653321100 11211 1111 11112333445567789999999999
Q ss_pred EEeeccccccccccCCCCCCC-CCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCC-hhHHHHHHHcCCCCCCCCcch
Q 007921 384 KLQYYGFKLASAAREDSPITE-VEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS-PFWQHVKEILNPETSVGARPW 461 (585)
Q Consensus 384 PIq~~~~~~~s~~r~~~~~~~-~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~-~~~~~l~~~l~p~~sl~~~~~ 461 (585)
|+||+++. ++++ .+++ +++|+|+|+|++|+||+||||+++++|+++++++.+ ++...+..++++. .+
T Consensus 242 Pi~ya~r~--~~~~---~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~~~~~~~~~~~~~~~------~~ 310 (434)
T PRK12907 242 PIQYAKAV--SGNN---QYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFA------HP 310 (434)
T ss_pred EEEEchhh--cccc---ccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHcCCC------Cc
Confidence 99999642 2221 2334 568999999999999999999999999999998743 2233444556653 25
Q ss_pred HHHHHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007921 462 VYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYL 539 (585)
Q Consensus 462 i~~ily~~~ii~Fs~f~--i~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~ 539 (585)
+|.++|++++++|+||| ++.||||+||||||+|++|||+||||+|++||+|+++|++++||++++++|++|++++.+.
T Consensus 311 ~~~~~y~~lii~Fs~fyt~i~~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~~~~~ 390 (434)
T PRK12907 311 IGMTLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIA 390 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 68889999999999996 6789999999999999999999999999999999999999999999999999999998764
Q ss_pred hccCCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhC
Q 007921 540 RRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYG 584 (585)
Q Consensus 540 ~~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~~~ 584 (585)
+ ++..+.+||||+||+||+++|++||+|+++.+++|+++++|+.
T Consensus 391 ~-~~~~~~~gGTslLI~VgV~ldt~~qi~s~l~~~~Y~~~~~~~~ 434 (434)
T PRK12907 391 T-LPPSAQIGGTSLLIIVGVALETMKTLESQLVKRHYKGFIKKAN 434 (434)
T ss_pred C-CCcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3 2222458999999999999999999999999999999999863
No 4
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=7.7e-86 Score=711.08 Aligned_cols=404 Identities=31% Similarity=0.529 Sum_probs=330.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccc-c--ccccccchhhcCchhHHHHHH
Q 007921 149 ESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASI 225 (585)
Q Consensus 149 ~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~-~--ga~~~~SLfsLGI~PyItAsI 225 (585)
+.++++++++|++||++++++||+|++||+||+|.+...+.+ +. +++.++.+ + ++.+++|+|+|||+|||||||
T Consensus 3 ~~~~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~-~~--~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsI 79 (417)
T CHL00161 3 QSKKKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSL-SN--NPLLNLLNTFSGGGFFVIGLFALGILPYINASI 79 (417)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhh-cc--ccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHH
Confidence 456789999999999999999999999999999987643211 10 12333333 2 467899999999999999999
Q ss_pred HHHHHHhHhhhHHHhhhc-ChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHH
Q 007921 226 LMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMS 304 (585)
Q Consensus 226 I~QLL~~~~P~L~kl~ke-g~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~~~~~~~~~~ivl~LvaGs~il~ 304 (585)
+||+++.++|++++++|| |++||||+|++|||+|+++|++||++++.+. ..... ..+....++++++|++|+++++
T Consensus 80 I~QLl~~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~~-~~~~~--~~~~~~~~~~v~~L~~Gt~~~~ 156 (417)
T CHL00161 80 IIQLLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWL-KPYLF--NWNLLLALEIVLALTSGSMIVL 156 (417)
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc--CcchHHHHHHHHHHHHHHHHHH
Confidence 999999889999999997 9999999999999999999999999986432 21111 1233457789999999999999
Q ss_pred HHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHhhheeceEEEEE
Q 007921 305 WICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVK 384 (585)
Q Consensus 305 WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~~~~~~~li~~l~i~llii~~iv~v~~~~rrIP 384 (585)
||||+|||||+|||+|++|++||++++|+.+.+.+... .+. .+.+.. +.++.++++++++++++++++||||
T Consensus 157 wL~e~it~~GiGnGiSliI~~~I~~~~p~~~~~~~~~~------~~~-~~~~~~-~~~~~~~~~vi~~vv~~~~~~rrIP 228 (417)
T CHL00161 157 WLSELITEKGLGNGSSLLIFFNIVSNLPKLLQSLLFSL------SAN-ITILSI-LLLLFLFFITLIGIIFLQEAIRKIP 228 (417)
T ss_pred HHHHHHHhcCcCcchHHHHHHHHHHHHHHHHHHHHHHh------ccc-hhHHHH-HHHHHHHHHHHHHHHHhhcceEEEE
Confidence 99999999999999999999999999999887654321 121 122211 1122344556677899999999999
Q ss_pred EeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCChhHHH---HHHHcCCCCCCCCcch
Q 007921 385 LQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH---VKEILNPETSVGARPW 461 (585)
Q Consensus 385 Iq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~~~~~~---l~~~l~p~~sl~~~~~ 461 (585)
+||+++.. .+...++++|+|+|+||+|+||+|||++++++|+++++++.+.++.. ...++++ ..+
T Consensus 229 i~~~~~~~------~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~------~~~ 296 (417)
T CHL00161 229 LISAKQLG------KSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLAS------FKI 296 (417)
T ss_pred EEEhhhhc------cccccCccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhcCCc------ccH
Confidence 99986431 11234567999999999999999999999999999999986544333 2223332 247
Q ss_pred HHHHHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007921 462 VYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYL 539 (585)
Q Consensus 462 i~~ily~~~ii~Fs~f~--i~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~ 539 (585)
+|.++|++++++||+|| ++.||||+||||||+|++|||+||||+|+|||+|+++|++++||++++++|++|++++.++
T Consensus 297 ~y~~~y~~lii~Fs~f~~~i~~~p~~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~l~~~~~ 376 (417)
T CHL00161 297 LYLVLYFVLILFFSYFYSTIVLNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESVL 376 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999 4568999999999999999999999999999999999999999999999999999998764
Q ss_pred hccCCccc-cccchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007921 540 RRINEGFS-IGFTSVLIIVGSIIELRRSYQAYNVMPSLSKAL 580 (585)
Q Consensus 540 ~~~~~~~~-~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l 580 (585)
+ . ..+. +||||+||+||+++|++||+|+++.+++|++++
T Consensus 377 ~-~-~~~~~~ggtslLI~Vgv~~~~~~qi~a~~~~~~Y~~~~ 416 (417)
T CHL00161 377 N-L-SVFKGLGTTSLLILVGVAIDTSRQIQTYLISNNYENMY 416 (417)
T ss_pred C-c-ccccccchhhhhhhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4 2 2244 699999999999999999999999999999875
No 5
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1e-83 Score=701.44 Aligned_cols=410 Identities=19% Similarity=0.224 Sum_probs=335.8
Q ss_pred hhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccch
Q 007921 134 FLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212 (585)
Q Consensus 134 ~l~~~k~~~~~-~~~~~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SL 212 (585)
|||.+|++..+ ||+++|.+++++++|++||++++++||+|++||+||+|.++ .+ .+.+++.++|.+++|+
T Consensus 3 ~~~~~~~~~~~~P~v~~p~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~-~~--------~l~~l~~~~gg~~~sl 73 (462)
T PRK08568 3 FLDKLEPILERLPAVKRPKGHVPFKEKLKWTAIVLILYFILTNIPLYGISQSS-QD--------LFELLRIIFAGSFGTL 73 (462)
T ss_pred HHHHHHHHHHhCCCccCCCcCccHHHHHHHHHHHHHHHHHHccCcCCCcCccc-cc--------HHHHHHHHhCCcccch
Confidence 78999999998 99999999999999999999999999999999999999875 22 1233444445558999
Q ss_pred hhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccc-cccchhHHHH
Q 007921 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYA-ASHSVKHVMV 291 (585)
Q Consensus 213 fsLGI~PyItAsII~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~-~~~~~~~~~~ 291 (585)
|+|||+|||||||+||++++. ++.+++++.|+||+|+|++||++|+++|++||.+++... .+.... ...+....++
T Consensus 74 f~LGI~PyItAsII~QLL~~~--~l~~l~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~-~~~~~~~~~~~~~~~~~ 150 (462)
T PRK08568 74 LQLGIGPIVTAGIILQLLVGS--KLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPFVLAG-AFGPATGLASTPLLALL 150 (462)
T ss_pred HHhCcHHHHHHHHHHHHHhhC--chheeccCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCcccccccHHHHHH
Confidence 999999999999999999755 455666667999999999999999999999999987433 222210 0123445778
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHH--------------HHHHhhhcCCCC-cchH
Q 007921 292 TAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLS--------------QLLVFKYTAGSS-VRWW 356 (585)
Q Consensus 292 ivl~LvaGs~il~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~--------------~~~~~~~~~g~~-~~~~ 356 (585)
+++||++|+++++||||+|||||+|||+|++|++||++++|+++.+.+. ... .++.. .+.+
T Consensus 151 i~l~L~~Gt~i~~wL~E~Itk~GiGnGiSliI~~gI~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~ 226 (462)
T PRK08568 151 IFLQLFLGGILIILLDELVSKWGIGSGISLFILAGVSQTIFVGLFNWLTGGQGLPVGFIPALFSAI----TSGNLTLALL 226 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHHHHHHHHHHhhhhcccCccccchHHHHHHHH----hcCccchhhh
Confidence 8999999999999999999999999999999999999999999876541 000 01110 1111
Q ss_pred -----HHHHHHHHHHHHHHHHhhheeceEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhH
Q 007921 357 -----PFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFP 431 (585)
Q Consensus 357 -----~~li~~l~i~llii~~iv~v~~~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p 431 (585)
++++ .+.++++++++++++|+++|||||||++. + ++++|+|+|+||+|+||+|||++++++|
T Consensus 227 ~r~~l~~l~-~~~~~~~i~~~~v~~q~~~~~IPI~~~k~------~------g~~s~iPiKln~aGvmPiIFassll~~p 293 (462)
T PRK08568 227 LTTRGLLLL-GLITTIVIFLIVVYLESMRVEIPLSHGRV------R------GARGRYPLKFIYVSVLPVILVRALQANI 293 (462)
T ss_pred hcccccHHH-HHHHHHHHHHHheeEEeeEEEEEEEeccc------c------CCCceeeEEecccCcHHHHHHHHHHHHH
Confidence 2333 23344556777899999999999999852 1 4669999999999999999999999999
Q ss_pred HHHHHHhCCh---h-----------HHHHHHHcCCCCCCCC--cch----HHHHHHHHHHHHHHHHH--hc-cChHHHHH
Q 007921 432 SILASILGSP---F-----------WQHVKEILNPETSVGA--RPW----VYYTIYAFFVFLFNIFD--IA-NLPKEIAD 488 (585)
Q Consensus 432 ~~I~~~l~~~---~-----------~~~l~~~l~p~~sl~~--~~~----i~~ily~~~ii~Fs~f~--i~-~~PkeIAe 488 (585)
+++++++.+. | .+++.++++|+.++.. .++ +|.++|++++++||+|| ++ .||||+||
T Consensus 294 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~p~~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~diAe 373 (462)
T PRK08568 294 QLFGQLLQRLGIPILGTYDSSGASPISGLAYYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQAR 373 (462)
T ss_pred HHHHHHHhhcCchhhhhcccccccchhHHHHHhCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999886321 2 1567788888655321 123 47888999999999999 44 58999999
Q ss_pred HHHHcCCccccccCChh-hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHH
Q 007921 489 YLNKMGARIPNVKPGKA-TIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSY 567 (585)
Q Consensus 489 ~Lkk~G~~IpGvRPGk~-T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~~~~~~~~~~ggTsLLIlVgvil~~~~qi 567 (585)
||||||++|||+||||+ |++||+|+++|+|++||++++++|++|++++.+ + +|||++|+||+++|++||+
T Consensus 374 ~Lkk~g~~IpGiRpG~~~t~~yL~~~i~r~t~~Ga~~l~~ia~lp~~~~~~----g-----~gtslLI~Vgv~~~~~~qi 444 (462)
T PRK08568 374 QLQNSGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVLADLLGAL----G-----GGTGLLLTVSIVYQLYEEI 444 (462)
T ss_pred HHHHcCCcccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-----CchhhhhhHHHHHHHHHHH
Confidence 99999999999999997 999999999999999999999999999998764 2 7999999999999999999
Q ss_pred HHHHhhhHHHHHHh
Q 007921 568 QAYNVMPSLSKALR 581 (585)
Q Consensus 568 ~a~~~~~~y~~~l~ 581 (585)
++++.+++|+++=|
T Consensus 445 ~~~~~~~~Y~~~~~ 458 (462)
T PRK08568 445 AREQLMEMYPLLRR 458 (462)
T ss_pred HHHHHHHHhHHHHH
Confidence 99999999986544
No 6
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=8.1e-84 Score=691.42 Aligned_cols=391 Identities=19% Similarity=0.283 Sum_probs=316.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccchhhcCchhHHHHHHHHH
Q 007921 149 ESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQ 228 (585)
Q Consensus 149 ~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SLfsLGI~PyItAsII~Q 228 (585)
+.++++|+|+|++||++++++||+|++||+||+|.++..++. +...+ +......|+.+|+|+|+|||+|||||||+||
T Consensus 5 ~~~~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~~~-~~~~~-~~~~fsGG~~~~~slfsLGI~PyItAsII~Q 82 (404)
T PRK12417 5 KKFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGGH-ESFLK-IAAANTGGDLRTLNIFSLGLGPWMTSMIILQ 82 (404)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcCcc-chHHH-HHHHhcccccccCcHHHHccHHHHHHHHHHH
Confidence 457889999999999999999999999999999988654321 11111 1111112578999999999999999999999
Q ss_pred HHHhH-hhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 007921 229 VLCHI-VPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWIC 307 (585)
Q Consensus 229 LL~~~-~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~~~~~~~~~~ivl~LvaGs~il~WL~ 307 (585)
+|+.. +|++++++|| |.||+ |||+|+++|++||++++.. ..+... .....+++++++|++|+++++|||
T Consensus 83 LL~~~~~~~l~~~~ke-e~gr~-----~r~ltl~la~iQs~~~~~~-~~~~~~---~~~~~~~~~~l~L~aGt~~~~WL~ 152 (404)
T PRK12417 83 LFSYRKRDGLMKQTIE-EQHYR-----ERILTLIIAVIQSLAVILS-LPSKER---ISQTNILLNTLILVTGTMFLVWLS 152 (404)
T ss_pred HHHhCCCcchhhcChH-HHHHH-----HHHHHHHHHHHHHHHHHHH-hccccc---chhhHHHHHHHHHHHHHHHHHHHH
Confidence 99998 8999999888 77875 4999999999999998643 322111 111356789999999999999999
Q ss_pred hhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHhhheeceEEEEEEee
Q 007921 308 DTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQY 387 (585)
Q Consensus 308 E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~~~~~~~li~~l~i~llii~~iv~v~~~~rrIPIq~ 387 (585)
|+||+||+| |+|++|++||++++|+++.+.+... ... ...++.+++++++.++++|+++||||+||
T Consensus 153 E~it~~GIG-G~SliI~~~Iv~~~p~~~~~~~~~~-----------~~~--~~~~~~~~~~~i~~~v~~~~~~rrIPi~~ 218 (404)
T PRK12417 153 DLNARYGIG-GPMPIVLVSMIKSIPQDVIEYIDAS-----------HIV--IILLILLVIITLFFLYFIELVEYRIPYND 218 (404)
T ss_pred HHHhCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH--HHHHHHHHHHHHHHHHHHhheEEEEEEEE
Confidence 999999999 9999999999999999987654221 011 11122233444556889999999999999
Q ss_pred ccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCC-----hhHHHHHHHcCCCCCCCCcchH
Q 007921 388 YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS-----PFWQHVKEILNPETSVGARPWV 462 (585)
Q Consensus 388 ~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~-----~~~~~l~~~l~p~~sl~~~~~i 462 (585)
+++. .++ .+++|+|+|+|+||+||+|||++++++|+++++++.+ .|......++++. .|+
T Consensus 219 ~~~~--~~~-------~~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 283 (404)
T PRK12417 219 IMNH--NRF-------KMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFG------SPL 283 (404)
T ss_pred hhhh--ccC-------CCCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCC------CcH
Confidence 8642 111 2569999999999999999999999999999998632 1222233334432 367
Q ss_pred HHHHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007921 463 YYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLR 540 (585)
Q Consensus 463 ~~ily~~~ii~Fs~f~--i~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~~ 540 (585)
|.++|++++++|+||| +..||||+||||||||++|||+||||+|++||+|+++|++++||++++++|++|.+++.. +
T Consensus 284 ~~~~y~~lii~fs~fys~i~~nP~diAe~lkk~g~~IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~lP~~~~~~-~ 362 (404)
T PRK12417 284 GVTVYLILQFLLSYFFSFVNINTKQIAKDMLKSGNYIPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGIPLYFTLF-D 362 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 9999999999999999 556999999999999999999999999999999999999999999999999999998764 1
Q ss_pred ccC-CccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 007921 541 RIN-EGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 582 (585)
Q Consensus 541 ~~~-~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~ 582 (585)
.+ .++.+||||++|+||+++|+.||+|+++.+++|++++++
T Consensus 363 -~~~~~~~~ggtsllI~Vgv~ldt~~qi~s~l~~~~Y~~~~~~ 404 (404)
T PRK12417 363 -PHLSTEIYFSGQFMMFVGMSFNIADEIRALLYFDKYKPLLNQ 404 (404)
T ss_pred -CccccceeccchheehhhhHHHHHHHHHHHHHHHHHhHHhcC
Confidence 11 125689999999999999999999999999999999874
No 7
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=1.3e-83 Score=692.67 Aligned_cols=403 Identities=29% Similarity=0.439 Sum_probs=320.9
Q ss_pred HHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhh-ccCccccccccccccccchhhcCchhHHHHHHHHHHHHh-Hh
Q 007921 157 RRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSF-VSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCH-IV 234 (585)
Q Consensus 157 ~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~-~~g~~~~l~~~ga~~~~SLfsLGI~PyItAsII~QLL~~-~~ 234 (585)
|+|++||++++++||+|++||+||+|.++..+++.+. .. .+.++...+|++++|+|+|||+|||||||+||+++. ..
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~~~~~~~-~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~~~ 79 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDIQQNGIF-NLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGDVP 79 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhhccccHH-HHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhccC
Confidence 5799999999999999999999999998654432110 00 123333446889999999999999999999999975 58
Q ss_pred hhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 007921 235 PSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESG 314 (585)
Q Consensus 235 P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~~~~~~~~~~ivl~LvaGs~il~WL~E~Itk~G 314 (585)
|.+++++||||+||+|+|++||++|+++|++||.+++.... ++. ..+++..+.++++++|++|+|+++||||+|||||
T Consensus 80 ~~l~~~~~~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~-~~~-~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~~G 157 (410)
T TIGR00967 80 PLLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGM-YGY-VGDPGAFFYLLIVIQLTTGSMIVMWLGEQITKYG 157 (410)
T ss_pred hHHHHHhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88988999999999999999999999999999999862222 111 1123344577899999999999999999999999
Q ss_pred CCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCCcc---hHHHHHHHHHHHHHHHHHhhheeceEEEEEEeecccc
Q 007921 315 FGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVR---WWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFK 391 (585)
Q Consensus 315 IGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~~~---~~~~li~~l~i~llii~~iv~v~~~~rrIPIq~~~~~ 391 (585)
+|||+|++|++||++++|+++.+.+.... .+ .++..+ .++.++ .+.+++++++.++++|+++||||+||++++
T Consensus 158 iGnG~SliI~~gI~~~~~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~IPi~~~~~~ 233 (410)
T TIGR00967 158 IGNGISLLIFAGIIATIPSGLLQPTEVRQ-SK--VRDLISFLQNLPFLL-YLIATIIVFAVVVFVQQARRKIPIQSAKRQ 233 (410)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHhh-hh--ccchhhHHHHHHHHH-HHHHHHHHHHHHheeeeeEEEEEEEEhhhh
Confidence 99999999999999999999877653210 00 111112 123333 233445567778999999999999999753
Q ss_pred ccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCChhHHHHHHHcCCCCCCCCcchHHHHHHHHHH
Q 007921 392 LASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFV 471 (585)
Q Consensus 392 ~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~~~~~~l~~~l~p~~sl~~~~~i~~ily~~~i 471 (585)
..+ + .++++|+|+|+||+|+||+|||++++++|+++++++.+.+.. .++.+++.+++..+|+|.++|++++
T Consensus 234 ~~~--~-----~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~y~~li 304 (410)
T TIGR00967 234 GGR--R-----GSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGG--AWFLNPILSLSLSDPIGAILYLILI 304 (410)
T ss_pred cCC--C-----CCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCCcch--hHHHHHHHhcCCcccHHHHHHHHHH
Confidence 211 1 356799999999999999999999999999999997543211 1122222223333578999999999
Q ss_pred HHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 007921 472 FLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIG 549 (585)
Q Consensus 472 i~Fs~f~i--~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~~~~~~~~~~g 549 (585)
++||+||. ..||||+||||||||++|||+||||+|++||+|+++|+|++||++++++|++|++++.+. +......+|
T Consensus 305 i~Fs~f~~~~~~~p~~iA~~lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~~~~~-~~~~~~~~g 383 (410)
T TIGR00967 305 IFFSFFYVELQLNPEDMAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGAIG-GLPTSKGLG 383 (410)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccCc
Confidence 99999994 458999999999999999999999999999999999999999999999999999998762 222222478
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhHH
Q 007921 550 FTSVLIIVGSIIELRRSYQAYNVMPSL 576 (585)
Q Consensus 550 gTsLLIlVgvil~~~~qi~a~~~~~~y 576 (585)
|||++|+||+++|++||+++++.+++|
T Consensus 384 gtsiLI~Vgv~~~~~~qi~~~~~~~~y 410 (410)
T TIGR00967 384 GTSLLIVVGVAIDTYKQLESYLISRNY 410 (410)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999886
No 8
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=6.1e-79 Score=664.87 Aligned_cols=408 Identities=17% Similarity=0.213 Sum_probs=324.7
Q ss_pred hhhhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCcccccccccccccc
Q 007921 132 NRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKL 210 (585)
Q Consensus 132 ~r~l~~~k~~~~~-~~~~~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~ 210 (585)
.||+|.+|+.... ||+++|.++.++|+|++||++++++||+|++||+||+|.++..|+ +.++++..+.+++
T Consensus 5 ~~~~~~~~~~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~~--------~~~~~~ifag~~~ 76 (474)
T PTZ00219 5 TRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSDP--------FYWMRVILASNRG 76 (474)
T ss_pred chHHHHHHHHHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccch--------HHHHHHHHhcCcc
Confidence 5688999999888 999999999999999999999999999999999999998765332 3344454455699
Q ss_pred chhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHH
Q 007921 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVM 290 (585)
Q Consensus 211 SLfsLGI~PyItAsII~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~~~~~~~~~ 290 (585)
|+|+|||+|||||||+||+|++. ++.+++++.+++|+|+|++||++|+++|++||++++. ...++. ....+....+
T Consensus 77 slf~LGI~PyItAsII~QLL~~~--~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~~-~~~~g~-~~~~~~~~~~ 152 (474)
T PTZ00219 77 TLMELGISPIVTSSMVMQLLAGS--KIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYVW-SGMYGD-ISEIGAGNAI 152 (474)
T ss_pred hHHHhccHHHHHHHHHHHHHhhC--CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccc-ccCccHHHHH
Confidence 99999999999999999999764 4555666666779999999999999999999999863 212222 1122333577
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-ccCCCcchhHhHHHHhhHHHHHHHHHHHHH--------------HHhh-hcCC---C
Q 007921 291 VTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYKMLSQL--------------LVFK-YTAG---S 351 (585)
Q Consensus 291 ~ivl~LvaGs~il~WL~E~Itk-~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~--------------~~~~-~~~g---~ 351 (585)
++++||++|+++++||||++|| ||+|||+||+|++||++++||+.++..... .... ...+ +
T Consensus 153 ~iilqL~~g~~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 232 (474)
T PTZ00219 153 LIILQLFFAGIVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRA 232 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccch
Confidence 8899999999999999999999 999999999999999999997655211100 0000 0000 0
Q ss_pred Ccc-----hHHHHHHHHHHHHHHHHHhhheeceEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHH
Q 007921 352 SVR-----WWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTY 426 (585)
Q Consensus 352 ~~~-----~~~~li~~l~i~llii~~iv~v~~~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAss 426 (585)
... -.+.++. +.++++++++++++++++||||++|++.+ ++++++|+|+||+|+||+|||++
T Consensus 233 l~~~~~r~~l~~~~~-~~~~~~i~~~vv~~~~~~~~IPi~~~~~~------------g~~~~~PiKln~agvmPiIfass 299 (474)
T PTZ00219 233 LKEAFYRPHLPNLTN-LLATVLVFLVVIYFQGFRVDLPLKSQKVR------------GQQQSYPIKLFYTSNIPIILQTA 299 (474)
T ss_pred hhhhhhhcccccHHH-HHHHHHHHHhheeeeeeEEEEeeeccccc------------CcCcccceeecccccHHHHHHHH
Confidence 000 0012221 23445567778999999999999998631 35677799999999999999999
Q ss_pred HHHhHHHHHHHhCC----h--------hH-----------HHHHHHcCCCCCCC--CcchHHHHHHHHHHHHHHHHH---
Q 007921 427 LLAFPSILASILGS----P--------FW-----------QHVKEILNPETSVG--ARPWVYYTIYAFFVFLFNIFD--- 478 (585)
Q Consensus 427 ll~~p~~I~~~l~~----~--------~~-----------~~l~~~l~p~~sl~--~~~~i~~ily~~~ii~Fs~f~--- 478 (585)
++++|+++++++.+ . |. +++.+|++|+.++. ..+|+|.++|++++++||+||
T Consensus 300 ll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~ 379 (474)
T PTZ00219 300 LVSNLYFFSQILYRRFKNNFLINLLGQWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFSKT 379 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccccceeccccccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988621 1 21 12677888765443 235789999999999888876
Q ss_pred -hc---cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccchhH
Q 007921 479 -IA---NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL 554 (585)
Q Consensus 479 -i~---~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~~~~~~~~~~ggTsLL 554 (585)
++ .||||+||||||+|++|||+||||+|+|||+|+++|+|++||++++++|++|++++.. + ||||+|
T Consensus 380 ~v~~sg~~p~~iA~~lkk~g~~IpG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~lp~~~~~~----~-----gGTslL 450 (474)
T PTZ00219 380 WIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIPTAASFGGMCIGALTILADFLGAI----G-----SGTGIL 450 (474)
T ss_pred HHHHhCCCHHHHHHHHHHcCCCccCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-----Cchhhh
Confidence 22 5899999999999999999999999999999999999999999999999999998742 2 899999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 007921 555 IIVGSIIELRRSYQAYNVM 573 (585)
Q Consensus 555 IlVgvil~~~~qi~a~~~~ 573 (585)
|+||++++++|++..|..+
T Consensus 451 I~VgV~~~~~e~~~~e~~~ 469 (474)
T PTZ00219 451 LAVTIIYQYYETFAKEKEQ 469 (474)
T ss_pred hhHHHHHHHHHHHHHHHhh
Confidence 9999999999999988654
No 9
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=3e-78 Score=647.86 Aligned_cols=385 Identities=18% Similarity=0.318 Sum_probs=302.5
Q ss_pred HHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCcccccccc--ccccccchhhcCchhHHHHHHHHHHHHh
Q 007921 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFFQLGISPQIVASILMQVLCH 232 (585)
Q Consensus 155 ~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~--ga~~~~SLfsLGI~PyItAsII~QLL~~ 232 (585)
.+|+|++||++++++||+|++||+||+|.+.. .+.....+.+.+++.+ |+..++|+|+|||+|||||||+||+|+.
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~--~~~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~~ 78 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQ--DMEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFSF 78 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhH--HHhcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999998752 1111001123333333 4567889999999999999999999998
Q ss_pred -HhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 007921 233 -IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS 311 (585)
Q Consensus 233 -~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~~~~~~~~~~ivl~LvaGs~il~WL~E~It 311 (585)
.+|++++++|| +.|| .|||+|+++|++||.+++.. ..+.. .......++++++|++|+|+++||||+||
T Consensus 79 ~~~~~l~~~~~~-~~~~-----~tr~ltl~~a~iQs~~~~~~-~~~~~---~~~~~~~~~~vl~L~~Gt~iv~wL~E~it 148 (395)
T TIGR02920 79 TKSDGFDAQSPK-EQQY-----RERFLTLIIAIIQGLAIIHS-FTNKN---GLSDFNMLLATLILVTGTCLLVWLADLNA 148 (395)
T ss_pred CcCcchhhhCHH-HhhH-----HHHHHHHHHHHHHHHHHHHH-hhccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 59999999887 4443 39999999999999998643 32211 11112466789999999999999999999
Q ss_pred hccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHhhheeceEEEEEEeecccc
Q 007921 312 ESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFK 391 (585)
Q Consensus 312 k~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~~~~~~~li~~l~i~llii~~iv~v~~~~rrIPIq~~~~~ 391 (585)
|||+| |+|++|++||++++|+++.+.++ .+ . .. .+...+.++++++++++++++++||||++|.++.
T Consensus 149 ~~GiG-G~sllI~~~I~s~~~~~~~~~~~--------~~-~-~~--~~~~~~~~~~~~i~~~v~~~~~~~rIpv~~~~~~ 215 (395)
T TIGR02920 149 KYGIG-GSMPIVLVSMLKNIPSNVFELFQ--------MS-Y-IW--LIALLILLTLVALFLLAFIERAEYRIPVNDISLH 215 (395)
T ss_pred CCCcc-hHHHHHHHHHHHHHHHHHHHHHh--------cc-h-HH--HHHHHHHHHHHHHHHHHheecceEEEEEEEchhh
Confidence 99999 99999999999999998866432 11 1 11 1121222334445568999999999999998642
Q ss_pred ccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhC----C-hhHHHHHHHcCCCCCCCCcchHHHHH
Q 007921 392 LASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG----S-PFWQHVKEILNPETSVGARPWVYYTI 466 (585)
Q Consensus 392 ~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~----~-~~~~~l~~~l~p~~sl~~~~~i~~il 466 (585)
. | +++++|+|+|+||+|+||+|||++++++|+++++.+. + ++...+...++ ..+|+|.++
T Consensus 216 ~----~-----~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~i~ 280 (395)
T TIGR02920 216 N----R-----SNLMSYLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSLINNWVFQFS------FSSPVGILI 280 (395)
T ss_pred c----c-----CCCCcccceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHhhccC------CcchHHHHH
Confidence 1 1 1356999999999999999999999999966654332 1 11111211122 234789999
Q ss_pred HHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 007921 467 YAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINE 544 (585)
Q Consensus 467 y~~~ii~Fs~f~--i~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~~~~~~ 544 (585)
|++++++||+|| +..||||+||||||||++|||+||||+|+|||+|+++|+|++||++++++|++|.+++.+++.. .
T Consensus 281 y~~lii~fs~fys~i~~nP~diA~~Lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~lP~~~~~~~~~~-~ 359 (395)
T TIGR02920 281 YLILQMLLSYFFTFVNINPKEISKSFRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAFQLGIPLYFALFVPHL-L 359 (395)
T ss_pred HHHHHHHHHHHHHHheECHHHHHHHHHHCCCCccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence 999999999998 4569999999999999999999999999999999999999999999999999999997764321 2
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007921 545 GFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKAL 580 (585)
Q Consensus 545 ~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l 580 (585)
.+.+||||++|+||+++|+.||+|+++.+++|++++
T Consensus 360 ~~~~ggtsllI~vgv~ldt~~qi~~~~~~~~Y~~~~ 395 (395)
T TIGR02920 360 TEAYIPGQFMMITGMSFNIADEIRTILYFDRYKPLL 395 (395)
T ss_pred ceeehhhhhhhhhhhHHhHHHHHHHHHHHHhhCCCC
Confidence 466899999999999999999999999999999864
No 10
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=4.4e-70 Score=576.75 Aligned_cols=334 Identities=31% Similarity=0.527 Sum_probs=278.4
Q ss_pred chhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccccc-----ccc
Q 007921 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAA-----SHS 285 (585)
Q Consensus 211 SLfsLGI~PyItAsII~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~-----~~~ 285 (585)
|+|+|||+|||||||+||++ ..|++.|++++||+||+|++++||++|+++|++||++++.....++.... ..+
T Consensus 1 SlfsLGI~PyitAsIi~Qll--~~~~l~~l~~~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~ 78 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLL--IIPKLIKLQKEGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGSG 78 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHH--HSSSSSSHSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTTC
T ss_pred ChHhhccHHHHHHHHHHHHH--hcccHHHhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchH
Confidence 79999999999999999999 68899999999999999999999999999999999999754444432111 123
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHH
Q 007921 286 VKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGV 365 (585)
Q Consensus 286 ~~~~~~ivl~LvaGs~il~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~~~~~~~li~~l~i 365 (585)
....++++++|++|+++++||||+|||||+|||+|++|++||++++|+++.+.++... + ..+...+++.. +..+.+
T Consensus 79 ~~~~~~i~l~L~~G~~i~~wL~e~it~~GiGnG~SliI~~~I~~~~~~~i~~~~~~~~-~--~~~~~~~~~~~-l~~~~~ 154 (346)
T PF00344_consen 79 FINYLLIVLQLVAGSMILIWLSELITKYGIGNGISLIIFAGIISNLPWSIINLFQLLS-N--KAGSLSNALFL-LIILII 154 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHH-T--TCSTSSSTHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH-H--hhcccccHHHH-HHHHHH
Confidence 4556899999999999999999999999999999999999999999999888776552 0 11223344432 334445
Q ss_pred HHHHHHHhhheeceEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCChh---
Q 007921 366 FTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPF--- 442 (585)
Q Consensus 366 ~llii~~iv~v~~~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~~~--- 442 (585)
+++++++++++|+++||||+||++.. + ...++++|+|+|+||+|+||+||+++++++|+++++++++.+
T Consensus 155 ~l~~~~~~v~l~~~~~rIPi~~~~~~-~-------~~~~~~~ylPikln~aG~mPiifa~sll~~p~~i~~~l~~~~~~~ 226 (346)
T PF00344_consen 155 TLVVIALVVYLQEAERRIPIQYARIV-N-------SSRGQSSYLPIKLNYAGVMPIIFASSLLSLPQYIAQFLNSQFPNN 226 (346)
T ss_dssp HHHHHHHHHHHHHCEEEECEBBSSSB----------SSSBCSCEEEETTSSTHHHHHHHHHHHHHHHHHHHHCTTCSCCS
T ss_pred HHHHHHhheeeeeeEEEEEEEecccc-c-------cCcccceeeeeeccccccchHHHHHHHHHHHHHHHHhccCCCccc
Confidence 56667789999999999999999752 1 112578999999999999999999999999999999985432
Q ss_pred --HHHHHHHcCCCCCCCCcchHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHH
Q 007921 443 --WQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTR 518 (585)
Q Consensus 443 --~~~l~~~l~p~~sl~~~~~i~~ily~~~ii~Fs~f~i--~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt 518 (585)
..++.++++.+ ...|+|.++|++++++||++|. ..+|||+||+|||+|++|||+||||+|+|||+|++++++
T Consensus 227 ~~~~~i~~~~~~~----~~~~~y~~~~~~li~~Fs~~~~~~~~~p~~iA~~lkk~g~~I~GirpG~~T~~yL~~~i~~~~ 302 (346)
T PF00344_consen 227 WLVSGIAYYFSQN----LNSPLYIIFYLILIILFSYFFSFININPKDIAENLKKSGDYIPGIRPGKPTEKYLNKVIPRLS 302 (346)
T ss_dssp CCSSCCHHHTSSS----HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHCHCTTSSSSTCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhccC----cchHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhCCEeCCCCCChhHHHHHHHHHHHHh
Confidence 12355556211 1248899999999999999994 347999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHHH
Q 007921 519 FWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRR 565 (585)
Q Consensus 519 ~~Ggl~L~~IA~lP~i~~~~~~~~~~~~~~ggTsLLIlVgvil~~~~ 565 (585)
++||++++++|++|++++.+.+ .++.++|||++|+||+++|++|
T Consensus 303 ~~G~~~l~~ia~~p~~~~~~~~---~~~~~~gtslli~V~v~~~~~~ 346 (346)
T PF00344_consen 303 FLGALFLALIAVLPLIFGLFGG---SSLFFGGTSLLIIVGVIIDTYE 346 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSS---CSCCCTHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHcc---cchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999987643 4566899999999999999986
No 11
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-62 Score=500.12 Aligned_cols=408 Identities=16% Similarity=0.200 Sum_probs=348.4
Q ss_pred ccchhhhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccc
Q 007921 129 MYKNRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAE 207 (585)
Q Consensus 129 ~~~~r~l~~~k~~~~~-~~~~~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~ 207 (585)
|.++||+|++||+.++ ||++.|.+|.++++|++||.+.+++|.+.+|||++|+..+...| +++|+|...|+
T Consensus 1 m~g~R~l~~vkPf~~~lPEv~~Perk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssdt~D--------P~yw~Rvilas 72 (476)
T KOG1373|consen 1 MSGFRFLDLVKPFLSFLPEVEAPERKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSDTAD--------PFYWMRVILAS 72 (476)
T ss_pred CCCcchhhhhhhhhccCccccCchhcCcHHHHHHHHHHHHHHHHHHhhccccccccCCCCC--------cHHHHHHHHhc
Confidence 5678999999999999 99999999999999999999999999999999999998766544 68899998899
Q ss_pred cccchhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccccchh
Q 007921 208 LKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVK 287 (585)
Q Consensus 208 ~~~SLfsLGI~PyItAsII~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~~~~~~ 287 (585)
+|+|+|+|||.|++|++.+||+|++. ++.+.+.+.++||+.+|..||.+++++++.||.+++..+ .|+.. ++.+..
T Consensus 73 nrgTLMelGisPivtSglimQlLag~--kiIeV~~~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~tG-~yG~p-~dLg~~ 148 (476)
T KOG1373|consen 73 NRGTLMELGISPIVTSGLIMQLLAGS--KIIEVNFNIKEDRELFNGAQKLFAIIITVGQAVVYVMTG-MYGSP-SDLGVG 148 (476)
T ss_pred CCcchhhhccchhhHHHHHHHHHccC--cEEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccCCh-hhcchh
Confidence 99999999999999999999999988 788888888999999999999999999999999997543 35432 244556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCC-cc-----------
Q 007921 288 HVMVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSS-VR----------- 354 (585)
Q Consensus 288 ~~~~ivl~LvaGs~il~WL~E~Itk-~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~-~~----------- 354 (585)
..+++++||+..+.+++.|||+++| ||+|||+||+|.+|||+++.|..++.-.... ++|.+ .|
T Consensus 149 ~clLii~QL~~Agiiv~lLdEllqKGyGlgSGislfiatnice~ivwkaFsptti~t----Grg~efeGAvIalfhll~t 224 (476)
T KOG1373|consen 149 ICLLIILQLFFAGIIVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINT----GRGTEFEGAVIALFHLLAT 224 (476)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCcCcchhhhhHHHHHHHHHHHhcCceEEec----CCCceechHHHHHHHHHHh
Confidence 6789999999999999999999999 9999999999999999999998764322111 11211 11
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHhhheeceEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcc
Q 007921 355 ---------------WWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQ 419 (585)
Q Consensus 355 ---------------~~~~li~~l~i~llii~~iv~v~~~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvM 419 (585)
.+|++.- +..+++++..++|+|..+.++|+++++. | |+.+.+|||+.|++.|
T Consensus 225 r~~k~~al~eAF~RqnLPNl~n-l~at~lif~iViYlQgfRVeLPirS~r~------R------G~~~~yPIKL~YTsn~ 291 (476)
T KOG1373|consen 225 RKDKVRALREAFYRQNLPNLTN-LLATVLIFLIVIYLQGFRVELPIRSTRA------R------GQYGSYPIKLFYTSNM 291 (476)
T ss_pred cchHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHhhccceEEEeeecchhh------c------ccCCccceEeeecCCc
Confidence 1255553 3344555667788888888999998764 2 6789999999999999
Q ss_pred hHHHHHHHHHhHHHHHHHhCCh------------hH-----------HHHHHHcCCCCCCCC--cchHHHHHHHHHHH--
Q 007921 420 PVLTTTYLLAFPSILASILGSP------------FW-----------QHVKEILNPETSVGA--RPWVYYTIYAFFVF-- 472 (585)
Q Consensus 420 PIIfAssll~~p~~I~~~l~~~------------~~-----------~~l~~~l~p~~sl~~--~~~i~~ily~~~ii-- 472 (585)
|+|+.|++.+....++|++... |. +++.+|++|+.++.. .+|+|+++|.+|++
T Consensus 292 pIilqsalvsni~~isqll~~k~~~n~~v~llG~w~~~~~~~~~~p~~glsyy~~pp~s~~~~~~dPi~~i~Yi~fml~s 371 (476)
T KOG1373|consen 292 PIILQSALVSNIFVISQLLYKKFPGNFLVRLLGVWEDSEGGGRSMPVSGLSYYITPPESFGEALQDPIHFLVYIVFMLGS 371 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEeeeecCCCCcccccccceeEecCChHHHHHHhhCcchhHHHHHHHHHH
Confidence 9999999999999999888211 21 367888999988773 57899999999887
Q ss_pred --HHHHHHhc--c-ChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 007921 473 --LFNIFDIA--N-LPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFS 547 (585)
Q Consensus 473 --~Fs~f~i~--~-~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~~~~~~~~~ 547 (585)
+||.-|++ . +|||+|++||+|++.++|+|.+ ++.++|+|+||.++++||.+++.++++++++|.. +
T Consensus 372 ca~FsktWievSgsSarDvAkqlKeQ~mvm~G~RE~-n~~~eLnr~IPtAA~~Gg~~igaltV~~d~lgai----G---- 442 (476)
T KOG1373|consen 372 CALFSKTWIEVSGSSARDVAKQLKEQQMVMRGHRET-NMAKELNRYIPTAAAFGGLCIGALTVLADLLGAI----G---- 442 (476)
T ss_pred HHHHHhHHHHHcCCCHHHHHHHHHhccceecCcchh-hHHHHHHhhccHHHHhhhhHHHHHHHHHHHhhcc----c----
Confidence 68888965 3 5999999999999999999997 9999999999999999999999999999999875 5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhH
Q 007921 548 IGFTSVLIIVGSIIELRRSYQAYNVMPS 575 (585)
Q Consensus 548 ~ggTsLLIlVgvil~~~~qi~a~~~~~~ 575 (585)
+||+++++|.++++++|+++.+...+.
T Consensus 443 -sgtgIllavt~iyqy~E~~~kE~~~~~ 469 (476)
T KOG1373|consen 443 -SGTGILLAVTIIYQYFEIFAKEQAQEG 469 (476)
T ss_pred -CCceEEeehHHHHHHHHHHHHHHhhcC
Confidence 799999999999999999998876654
No 12
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=93.15 E-value=0.033 Score=40.26 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=21.6
Q ss_pred HHHHhCccccCCCccCCCcchhhhhhccCccccccccccccc
Q 007921 168 VISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELK 209 (585)
Q Consensus 168 ~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~ 209 (585)
++|.+.++|||+|+......| ++++++...|+++
T Consensus 1 ilYl~ls~ipLyG~~~~~~~D--------~f~~~R~i~As~~ 34 (35)
T PF10559_consen 1 ILYLFLSQIPLYGLQSASSSD--------PFYWLRAIFASNR 34 (35)
T ss_dssp HHHHHHHHSB-STSTTTTSSC--------CHTTTHHHHTSST
T ss_pred CEEEEeeCCccccccCCCcCC--------HHHHHHHHHcccC
Confidence 589999999999995444433 3555665444443
No 13
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=52.13 E-value=40 Score=30.34 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhH-hhhHHHhhhcChhhHHHHHhHHHHHHHHH
Q 007921 219 PQIVASILMQVLCHI-VPSLVQLRKEGLDGHEKIKSYIWWISLGF 262 (585)
Q Consensus 219 PyItAsII~QLL~~~-~P~L~kl~keg~~gr~ki~~~tR~ltli~ 262 (585)
=.++.||++|++.++ .--+.+.+-+.++.+++.+....+.+.+.
T Consensus 46 ~Li~iSlvLQv~vgilli~~~~~n~~~~~~~~~~~~lnn~~~~~v 90 (104)
T PF04923_consen 46 TLISISLVLQVVVGILLIFISRYNINKPEKQRRANRLNNWATILV 90 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 357889999999886 33344455455555666666655555443
No 14
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=37.59 E-value=2.8e+02 Score=30.79 Aligned_cols=25 Identities=32% Similarity=0.580 Sum_probs=21.6
Q ss_pred cCCCcchhHhHHHHhhHHHHHHHHHH
Q 007921 314 GFGQGSSLIICVGILTGYTETLYKML 339 (585)
Q Consensus 314 GIGnGiSLiI~~gIi~~lp~~l~~~~ 339 (585)
|+| |.|++|++|++-+..+++....
T Consensus 383 ~~g-gtslLI~Vgv~~~~~~qi~a~~ 407 (417)
T CHL00161 383 GLG-TTSLLILVGVAIDTSRQIQTYL 407 (417)
T ss_pred ccc-hhhhhhhHHHHHHHHHHHHHHH
Confidence 677 9999999999999999886544
No 15
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=33.90 E-value=1.4e+02 Score=28.86 Aligned_cols=33 Identities=27% Similarity=0.160 Sum_probs=21.7
Q ss_pred cChHHHHHHHHHcCCccccccCChhhHHHHHHhh
Q 007921 481 NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQ 514 (585)
Q Consensus 481 ~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi 514 (585)
++|||+|++++..- .+...++.++..+....+.
T Consensus 51 G~P~~iA~~i~~~~-~i~~~~~~~~~~~~~~~i~ 83 (181)
T PF08006_consen 51 GSPKEIAREILAEY-SIKEEEKKKSWRNILRAIL 83 (181)
T ss_pred CCHHHHHHHHHHhh-hhhhhhccchhhhhHHHHH
Confidence 37999999999754 4566665555555554443
No 16
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=33.32 E-value=4.3e+02 Score=26.22 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHHHHHHHhccChHHHHHHHHHcCCccccccCCh-hhHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHH
Q 007921 460 PWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGK-ATIEYLTKIQASTRFWGGL--LLSILATSSTILD 536 (585)
Q Consensus 460 ~~i~~ily~~~ii~Fs~f~i~~~PkeIAe~Lkk~G~~IpGvRPGk-~T~~YL~kvi~rlt~~Ggl--~L~~IA~lP~i~~ 536 (585)
..+++.+..+.+.+||.|| .+--..+||+|++. =|..||.| +|.+-|+.-+ .+.++|-+ +++.-+..-.++.
T Consensus 57 ~gl~~a~~gl~~l~~si~~-~fry~Rlar~L~~~---~~~~~P~k~~~~~~l~~Gl-~~nl~Gmllt~lG~~a~vG~L~a 131 (183)
T PF12263_consen 57 IGLFLAICGLVALFFSIFW-SFRYTRLARRLRSP---NPAKRPSKADVVRLLRIGL-IINLVGMLLTLLGAQATVGTLVA 131 (183)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc---CCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777888877 12237899999944 67889986 4555444332 34444433 2344444444444
Q ss_pred H
Q 007921 537 H 537 (585)
Q Consensus 537 ~ 537 (585)
.
T Consensus 132 k 132 (183)
T PF12263_consen 132 K 132 (183)
T ss_pred H
Confidence 3
No 17
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=29.50 E-value=2.4e+02 Score=31.63 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=21.6
Q ss_pred ccCCCcchhHhHHHHhhHHHHHHHHHH
Q 007921 313 SGFGQGSSLIICVGILTGYTETLYKML 339 (585)
Q Consensus 313 ~GIGnGiSLiI~~gIi~~lp~~l~~~~ 339 (585)
.++| |.|++|++|++-...+++....
T Consensus 396 ~~~g-GTslLI~VgV~ldt~~qi~s~l 421 (434)
T PRK12907 396 AQIG-GTSLLIIVGVALETMKTLESQL 421 (434)
T ss_pred cccc-hhhhhhhHHHHHHHHHHHHHHH
Confidence 4466 9999999999999999886544
No 18
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=25.84 E-value=2.3e+02 Score=25.76 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc-ccccch---hHHHHHHHHHHHHHHHHHH
Q 007921 256 WWISLGFAILEAVIVACYSLPYSIY-AASHSV---KHVMVTAFLLVCGAMTMSW 305 (585)
Q Consensus 256 R~ltli~aiiQa~~i~~~~~~~~~~-~~~~~~---~~~~~ivl~LvaGs~il~W 305 (585)
..+-+++|++|.++...+-+.-+.- ...++. .+.+.++++++.|+.-+||
T Consensus 47 ~~~i~~lA~vQi~VqL~~FLHl~~~~~~~wn~~al~Ft~~i~~iiv~GSlWIM~ 100 (109)
T PRK10582 47 LGTILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMW 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556788999999986544332211 111222 2345668888899987776
No 19
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=25.19 E-value=3.4e+02 Score=24.46 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007921 520 WGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKA 579 (585)
Q Consensus 520 ~Ggl~L~~IA~lP~i~~~~~~~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~ 579 (585)
+-++.+.++++.|++.+...+-+| +. .|++++..++++.-..-.+..+....+.++-
T Consensus 38 ~~~i~~l~~~ifP~~~~~vA~~lG--i~-~~~n~lf~~~i~~ll~~~~~l~~~is~le~~ 94 (115)
T PF10066_consen 38 VFSIILLILSIFPNILDWVAKLLG--IG-RPPNLLFYLGILFLLVIIFSLYVRISRLEEK 94 (115)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHC--CC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677788998776533222 11 4777777777777766666666665555533
No 20
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=24.78 E-value=5.5e+02 Score=28.63 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=20.6
Q ss_pred CCCcchhHhHHHHhhHHHHHHHHHH
Q 007921 315 FGQGSSLIICVGILTGYTETLYKML 339 (585)
Q Consensus 315 IGnGiSLiI~~gIi~~lp~~l~~~~ 339 (585)
+| |.|++|++|++-+..+++....
T Consensus 394 ~g-gTslLI~Vgv~l~~~~qi~~~~ 417 (426)
T PRK09204 394 FG-GTSLLIVVGVALDTMKQIESQL 417 (426)
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 56 9999999999999999886544
No 21
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=23.90 E-value=2.9e+02 Score=24.54 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc-ccccch---hHHHHHHHHHHHHHHHHHH
Q 007921 256 WWISLGFAILEAVIVACYSLPYSIY-AASHSV---KHVMVTAFLLVCGAMTMSW 305 (585)
Q Consensus 256 R~ltli~aiiQa~~i~~~~~~~~~~-~~~~~~---~~~~~ivl~LvaGs~il~W 305 (585)
..+-+++|++|..+...+-+.-+.- ...++. .+..++++.+++||.-+|+
T Consensus 36 ~~~i~~~A~iQi~vqL~~FlHl~~~~~~~~n~~~l~Ft~~i~~iiv~GSiWIm~ 89 (96)
T TIGR02847 36 LVIIIVLAVVQILVHLVFFLHLNTSSEQRWNLISLLFTILIIFILIGGSIWIMH 89 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455788999999876543332211 111222 2356778889999987776
No 22
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=23.01 E-value=5.6e+02 Score=28.41 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=20.7
Q ss_pred CCCcchhHhHHHHhhHHHHHHHHHH
Q 007921 315 FGQGSSLIICVGILTGYTETLYKML 339 (585)
Q Consensus 315 IGnGiSLiI~~gIi~~lp~~l~~~~ 339 (585)
+| |.|++|++|++-+...++....
T Consensus 370 ~g-gtsllI~Vgv~ldt~~qi~s~l 393 (404)
T PRK12417 370 YF-SGQFMMFVGMSFNIADEIRALL 393 (404)
T ss_pred ec-cchheehhhhHHHHHHHHHHHH
Confidence 67 9999999999999998886544
No 23
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=22.07 E-value=5.1e+02 Score=23.26 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=24.6
Q ss_pred HHHhhhhh-ccCCCcchhHhHHHHhhHHHHHHH
Q 007921 305 WICDTISE-SGFGQGSSLIICVGILTGYTETLY 336 (585)
Q Consensus 305 WL~E~Itk-~GIGnGiSLiI~~gIi~~lp~~l~ 336 (585)
.+.+.+.+ -|+|.|++++...+++.-+.-.+.
T Consensus 51 ~~~~~vA~~lGi~~~~n~lf~~~i~~ll~~~~~ 83 (115)
T PF10066_consen 51 NILDWVAKLLGIGRPPNLLFYLGILFLLVIIFS 83 (115)
T ss_pred hHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHH
Confidence 45556666 899999999999999886665543
No 24
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=21.85 E-value=1.1e+02 Score=26.62 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=34.2
Q ss_pred cCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 007921 493 MGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATS 531 (585)
Q Consensus 493 ~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~l 531 (585)
.|...||--||.+..-.+.|.....|++.++.-+++..+
T Consensus 32 ~g~vv~Gt~~sAP~~~~l~rk~~~TTiiaavi~~~~~~~ 70 (85)
T PF07330_consen 32 AGEVVPGTDPSAPANPRLKRKALITTIIAAVIFAIIYLI 70 (85)
T ss_pred CCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999999999999999887776654
Done!