Query 007921
Match_columns 585
No_of_seqs 127 out of 1090
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:47:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjs_Y Preprotein translocase 100.0 8.3E-94 2.8E-98 772.1 39.0 414 149-583 7-431 (434)
2 3dl8_G Preprotein translocase 100.0 1.1E-94 3.8E-99 779.0 18.4 414 148-582 6-429 (429)
3 3j01_A Preprotein translocase 100.0 3.2E-93 1.1E-97 768.3 12.9 409 153-583 9-429 (435)
4 3din_C Preprotein translocase 100.0 1.7E-92 5.8E-97 761.9 17.3 406 148-582 6-424 (431)
5 1rh5_A Preprotein translocase 100.0 6E-90 2E-94 743.0 30.2 402 135-582 1-432 (436)
6 3mp7_A Preprotein translocase 100.0 1.6E-89 5.4E-94 747.2 17.9 414 134-581 3-464 (482)
7 2ww9_A SEC sixty-one protein h 100.0 2.5E-86 8.5E-91 723.3 16.8 409 131-574 3-474 (490)
8 2wwb_A Protein transport prote 100.0 8E-83 2.7E-87 694.1 26.2 403 132-572 3-466 (476)
9 2nsc_A Trigger factor, TF; cha 41.5 16 0.00054 31.4 3.0 23 493-515 37-59 (109)
10 1p9y_A Trigger factor, TF; alp 34.3 24 0.00082 30.9 3.0 23 494-516 41-63 (121)
11 2d3o_1 Trigger factor, TF; rib 27.6 20 0.00069 30.9 1.3 36 486-522 30-65 (112)
No 1
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=8.3e-94 Score=772.09 Aligned_cols=414 Identities=27% Similarity=0.452 Sum_probs=337.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccc-ccccc--ccccccchhhcCchhHHHHHH
Q 007921 149 ESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVD-ELGDF--GAELKLSFFQLGISPQIVASI 225 (585)
Q Consensus 149 ~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~-~l~~~--ga~~~~SLfsLGI~PyItAsI 225 (585)
..++++|+|+|++||++++++||+|++||+||+|.++.++. .+..+++++ +++.+ ||++++|+|+|||+|||||||
T Consensus 7 ~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~-~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItASI 85 (434)
T 2zjs_Y 7 SALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEF-LRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAAI 85 (434)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHH-HHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHHH
T ss_pred hHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHH-HhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHHH
Confidence 46778999999999999999999999999999999876442 222122344 33333 478999999999999999999
Q ss_pred HHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhc-c-ccc-cccc--cchhHHHHHHHHHHHHH
Q 007921 226 LMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSL-P-YSI-YAAS--HSVKHVMVTAFLLVCGA 300 (585)
Q Consensus 226 I~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~-~-~~~-~~~~--~~~~~~~~ivl~LvaGs 300 (585)
|||||+.++|.++|++||||+||+|+|++|||+|+++|++||++++.... . ++. ...+ ++..+.++++++|++|+
T Consensus 86 I~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~aGt 165 (434)
T 2zjs_Y 86 IMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGI 165 (434)
T ss_dssp HHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHHHH
Confidence 99999989999999999999999999999999999999999999875421 1 121 1122 34446778999999999
Q ss_pred HHHHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHhhheeceE
Q 007921 301 MTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGC 380 (585)
Q Consensus 301 ~il~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~~~~~~~li~~l~i~llii~~iv~v~~~~ 380 (585)
|++|||||+|||||+|||+|++|++||++++|+.+.+.++.. ..++ .++.. ++..+++++++++++|++|+++
T Consensus 166 ~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~-----~~~~-~~~~~-~~~~l~~~~~vi~~vV~~~~~~ 238 (434)
T 2zjs_Y 166 ALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLI-----RTGE-VNLVA-FLFFLAFIVLAFAGMAAVQQAE 238 (434)
T ss_dssp HHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTT-----TTTS-SCHHH-HHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHh-----ccCc-ccHHH-HHHHHHHHHHHHHHHHHheeeE
Confidence 999999999999999999999999999999999988776533 1222 34432 2333445566677789999999
Q ss_pred EEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhC-ChhHHHHHHHcCCCCCCCCc
Q 007921 381 RKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG-SPFWQHVKEILNPETSVGAR 459 (585)
Q Consensus 381 rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~-~~~~~~l~~~l~p~~sl~~~ 459 (585)
|||||||+++. .++| .++++++|+|+|+|++|+||+|||++++++|+++++++. ++|..++.++++|+
T Consensus 239 rrIPvqyakr~--~gr~---~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~------ 307 (434)
T 2zjs_Y 239 RRIPVQYARKV--VGGR---VYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPT------ 307 (434)
T ss_dssp EEEEEEECC------------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSS------
T ss_pred EEEeehhhhhh--ccCc---ccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCC------
Confidence 99999999742 2222 456789999999999999999999999999999999764 45666688888875
Q ss_pred chHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007921 460 PWVYYTIYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDH 537 (585)
Q Consensus 460 ~~i~~ily~~~ii~Fs~f~i--~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~ 537 (585)
+|+|.++|++++++|||||. +.||||+||||||||++|||+||||+|++||+|+++|+|++||++++++|++|++++.
T Consensus 308 ~~~y~~~y~~lii~Fs~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~ 387 (434)
T 2zjs_Y 308 RPSGLFIEVLLVILFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQN 387 (434)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 38999999999999999994 4699999999999999999999999999999999999999999999999999999865
Q ss_pred HhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 007921 538 YLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY 583 (585)
Q Consensus 538 ~~~~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~~ 583 (585)
. .++. ++.+||||+||+||+++|++||+++++.+++|+++++|.
T Consensus 388 ~-~~~~-~~~~gGTslLI~VgV~ldt~~qi~s~~~~~~Y~~~~~~~ 431 (434)
T 2zjs_Y 388 L-TGIH-SIAFSGIGLLIVVGVALDTLRQVESQLMLRSYEGFLSRG 431 (434)
T ss_dssp H-SSCC-CGGGSSHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred h-cCcc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 4 2121 567899999999999999999999999999999999874
No 2
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=1.1e-94 Score=779.02 Aligned_cols=414 Identities=30% Similarity=0.539 Sum_probs=337.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCcccccccc--ccccccchhhcCchhHHHHHH
Q 007921 148 AESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFFQLGISPQIVASI 225 (585)
Q Consensus 148 ~~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~--ga~~~~SLfsLGI~PyItAsI 225 (585)
+..++++|+|+|++||++++++||+|++||+||+|.++.++.+.....+.+.+++.+ |+++++|+|+|||+|||||||
T Consensus 6 ~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyItAsI 85 (429)
T 3dl8_G 6 KALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISASI 85 (429)
T ss_dssp --CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHHHHH
T ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHhhhccccHHHHHHHHhCcccccccHHHHhhHHHHHHHH
Confidence 446788999999999999999999999999999999876332111011223344444 457999999999999999999
Q ss_pred HHHHHHhHhhhHHHhhh-cChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccc-----cccccccchhHHHHHHHHHHHH
Q 007921 226 LMQVLCHIVPSLVQLRK-EGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPY-----SIYAASHSVKHVMVTAFLLVCG 299 (585)
Q Consensus 226 I~QLL~~~~P~L~kl~k-eg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~-----~~~~~~~~~~~~~~ivl~LvaG 299 (585)
+||||+.++|+++|++| |||+||+|+|++|||+|+++|++||++++...... .....+.+....++++++|++|
T Consensus 86 I~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aG 165 (429)
T 3dl8_G 86 MMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAG 165 (429)
T ss_dssp HHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999986543210 0111233445678899999999
Q ss_pred HHHHHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHhhheece
Q 007921 300 AMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEG 379 (585)
Q Consensus 300 s~il~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~~~~~~~li~~l~i~llii~~iv~v~~~ 379 (585)
++++|||||+|||||+|||+|++|++||++++|+++.+..+.. .+...++.+.++ .++++++++++++++|++
T Consensus 166 t~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~~~------~~g~~~~~~~l~-~l~~~l~vi~~vV~~~~~ 238 (429)
T 3dl8_G 166 TMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQFYEKV------KTGDIGPLTLLL-IIALIIAIIVGIVYVQEA 238 (429)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHTTTTSSCCCCSS------SCSSSCTHHHHH-HHHHHHHHHHHHTCSCCC
T ss_pred HHHHHHHHHHHhhcCcCcchHHHHHHHHHHHHHHHHHhHHHHh------cCCcchHHHHHH-HHHHHHHHHHHHHHheee
Confidence 9999999999999999999999999999999999875543211 111234544433 344556667789999999
Q ss_pred EEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCChhHHHHHHHcCCCCCCCCc
Q 007921 380 CRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGAR 459 (585)
Q Consensus 380 ~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~~~~~~l~~~l~p~~sl~~~ 459 (585)
+|||||||+|+. .++| .++++++|+|+|+||+|+||+|||++++++|++++++++++|..++.++++|.
T Consensus 239 ~rrIPvqyakr~--~g~~---~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~l~~~------ 307 (429)
T 3dl8_G 239 ERRIPIQYPGRQ--VGRQ---LYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMFQPG------ 307 (429)
T ss_dssp CCCCCCBCSSSC--BCCC---CCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSCSSCCCCTTTTTTTTT------
T ss_pred EEEEEEEEchhh--cccc---ccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHcCCC------
Confidence 999999999742 2222 55688999999999999999999999999999999988655555555666654
Q ss_pred chHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007921 460 PWVYYTIYAFFVFLFNIFDIA--NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDH 537 (585)
Q Consensus 460 ~~i~~ily~~~ii~Fs~f~i~--~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~ 537 (585)
.|+|.++|++++++|||||.. .||||+||||||||++|||+||||+|+|||+|+++|+|++||++++++|++|++++.
T Consensus 308 ~~~y~~~y~~lii~Fs~fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~ 387 (429)
T 3dl8_G 308 AIFYNFLYVTFIVFFTYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISV 387 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHTCCCCBSSSBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 489999999999999999944 589999999999999999999999999999999999999999999999999999875
Q ss_pred HhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 007921 538 YLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 582 (585)
Q Consensus 538 ~~~~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~ 582 (585)
.. +.++.+||||+||+||+++|++||+++++.+++|+++++|
T Consensus 388 ~~---g~~~~~gGTslLI~Vgv~l~~~~qi~s~l~~~~Y~g~~~~ 429 (429)
T 3dl8_G 388 WF---NIPFYFGGTTALIVVGVALDTFRQIETYLIQKKYKSYVRR 429 (429)
T ss_dssp SS---CCSCCCSTHHHHHHHHHHHHHHHHHHHHCCCCCTTCSCC-
T ss_pred Hh---CCCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 32 3345679999999999999999999999999999999875
No 3
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=3.2e-93 Score=768.32 Aligned_cols=409 Identities=27% Similarity=0.478 Sum_probs=334.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccc-ccccc--ccccccchhhcCchhHHHHHHHHHH
Q 007921 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVD-ELGDF--GAELKLSFFQLGISPQIVASILMQV 229 (585)
Q Consensus 153 k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~-~l~~~--ga~~~~SLfsLGI~PyItAsII~QL 229 (585)
++|+|+|++||++++++||+|++||+||+|.++..+.+ +...+.+. .++.+ |+++++|+|+|||+|||||||||||
T Consensus 9 ~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~-~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII~QL 87 (435)
T 3j01_A 9 LGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLL-EQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQL 87 (435)
T ss_dssp SCSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCSSC-SCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHH-hhccccHHHHHHHHcccccccccHHHHchHHHHHHHHHHHH
Confidence 37999999999999999999999999999998764321 11112222 22223 4679999999999999999999999
Q ss_pred HHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhcc-cc--ccccccchhHHHHHHHHHHHHHHHHHHH
Q 007921 230 LCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLP-YS--IYAASHSVKHVMVTAFLLVCGAMTMSWI 306 (585)
Q Consensus 230 L~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~-~~--~~~~~~~~~~~~~ivl~LvaGs~il~WL 306 (585)
|+.++|+++|++||||+||+|+|++|||+|+++|++||++++..... ++ ....+++....++++++|++|++++|||
T Consensus 88 L~~~ip~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL 167 (435)
T 3j01_A 88 LTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWL 167 (435)
T ss_dssp HHHHCSSSSSCSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998754321 10 1111233445678999999999999999
Q ss_pred HhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHhhheeceEEEEEEe
Q 007921 307 CDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQ 386 (585)
Q Consensus 307 ~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~~~~~~~li~~l~i~llii~~iv~v~~~~rrIPIq 386 (585)
||+|||||+|||+|++|++||++++|+++.+.++.. .....+++ .++..++++++++++++++|+++||||||
T Consensus 168 ~E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~~~~------~~~~~~~~-~~l~~~~~~l~vi~~vV~~~~~~rrIPvq 240 (435)
T 3j01_A 168 GEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQA------RQGDLHFL-VLLLVAVLVFAVTFFVVFVERGQRRIVVN 240 (435)
T ss_dssp HHHSTTSCCSSSHHHHHHHHHHHHSSTTSSSCCCSS------SSTTSSSH-HHHHHHHHHHHHHHHTTCCCCCSCCCCCC
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHH------hcccchHH-HHHHHHHHHHHHHHHHHHhheeEEEEEEE
Confidence 999999999999999999999999999865433221 11122333 22333445566677889999999999999
Q ss_pred eccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCCh----hHHHHHHHcCCCCCCCCcchH
Q 007921 387 YYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP----FWQHVKEILNPETSVGARPWV 462 (585)
Q Consensus 387 ~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~~----~~~~l~~~l~p~~sl~~~~~i 462 (585)
|+|+. .++| .++++++|+|+|+||||+||+|||++++++|+++++++++. |..++.++++|+ .|+
T Consensus 241 yakr~--~g~~---~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~l~~~------~~~ 309 (435)
T 3j01_A 241 YAKRQ--QGRR---VYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPG------QPL 309 (435)
T ss_dssp CCCCC--SSCC---CCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSCCCSSCCSSSSCCCCSS------GGG
T ss_pred ehhhh--cccc---ccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHcCCC------CcH
Confidence 99753 2222 55678999999999999999999999999999999976421 333334445443 488
Q ss_pred HHHHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007921 463 YYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLR 540 (585)
Q Consensus 463 ~~ily~~~ii~Fs~f~--i~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~~ 540 (585)
|.++|++++++|+||| +..||||+||||||||++|||+|||++|+|||+|+++|+|++||++++++|++|++++...
T Consensus 310 ~~~~y~~lii~F~~fyt~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlP~~l~~~~- 388 (435)
T 3j01_A 310 YVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAM- 388 (435)
T ss_dssp GTHHHHHHHHHHHHHHHHHSSCTTHHHHHTTSTTCSSSCCSSSSSSCSHHHHHHHHHCHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 9999999999999999 5569999999999999999999999999999999999999999999999999999987542
Q ss_pred ccCCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 007921 541 RINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY 583 (585)
Q Consensus 541 ~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~~ 583 (585)
+.++.+||||+||+||+++|++||+++++.+++|++++++-
T Consensus 389 --~~~~~~gGTslLI~VgV~ldt~~qi~s~l~~~~Y~g~~~~~ 429 (435)
T 3j01_A 389 --KVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKA 429 (435)
T ss_dssp --SSSSSSCCHHHHHTHHHHHHHHHHHHHHTSCCCCCCSCSCC
T ss_pred --ccCeecccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 23456899999999999999999999999999999998763
No 4
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.7e-92 Score=761.88 Aligned_cols=406 Identities=25% Similarity=0.508 Sum_probs=331.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhh---c--cCcccccccc--ccccccchhhcCchhH
Q 007921 148 AESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSF---V--SGSVDELGDF--GAELKLSFFQLGISPQ 220 (585)
Q Consensus 148 ~~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~---~--~g~~~~l~~~--ga~~~~SLfsLGI~Py 220 (585)
+..++++|+|+|++||++++++||+|++||+||+|.+++.+.+.+. . .+.+.+++.+ |+++++|+|+|||+||
T Consensus 6 ~~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLGI~Py 85 (431)
T 3din_C 6 KNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVTPY 85 (431)
T ss_dssp --CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSHHHH
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhhccccccccHHHHHHHHcCcccccccHHHHhhHHH
Confidence 4567889999999999999999999999999999998753311110 0 1123334333 4569999999999999
Q ss_pred HHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhcccc---ccccccc-hhHHHHHHHHH
Q 007921 221 IVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS---IYAASHS-VKHVMVTAFLL 296 (585)
Q Consensus 221 ItAsII~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~---~~~~~~~-~~~~~~ivl~L 296 (585)
||||||||||+.++|+++|++||||+||+|+|++|||+|+++|++||++++.... ++ ....+.+ ....++++++|
T Consensus 86 ItAsII~QLL~~~iP~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vl~L 164 (431)
T 3din_C 86 ITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLA-RSNPDMVAPGVNVLQFTVLSTMSM 164 (431)
T ss_dssp HHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCSSCCCCCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCccccccCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999874332 21 1101233 45678899999
Q ss_pred HHHHHHHHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHhhhe
Q 007921 297 VCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVV 376 (585)
Q Consensus 297 vaGs~il~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~~~~~~~li~~l~i~llii~~iv~v 376 (585)
++|++++|||||+|||||+|||+|++|++||++++|+++.+.. .+ ..++.+.++ .++++++++++++++
T Consensus 165 ~aGt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~---------~~-~~~~~~~l~-~l~~~l~vi~~vV~~ 233 (431)
T 3din_C 165 LAGTMFLLWLGERITEKGIGNGISILIFAGIVARYPSYIRQAY---------LG-GLNLLEWIF-LIAVALITIFGIILV 233 (431)
T ss_dssp HHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHSTTSSSCCS---------SC-CSCTHHHHH-HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHh---------cc-cccHHHHHH-HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999865422 12 234444433 344556667789999
Q ss_pred eceEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCChhHHHHHHHcCCCCCC
Q 007921 377 TEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSV 456 (585)
Q Consensus 377 ~~~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~~~~~~l~~~l~p~~sl 456 (585)
|+++|||||||+|+. .++| .++++++|+|+|+||+|+||+|||++++++|+++++++++.| ..++++|
T Consensus 234 ~~~~rrIPvqyakr~--~g~~---~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~---~~~~~~~---- 301 (431)
T 3din_C 234 QQAERRITIQYARRV--TGRR---VYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASITNNET---LKNLFRA---- 301 (431)
T ss_dssp CCBCCCCCCCBTTTB--CCCC---CCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSSTTCC---CCCCSST----
T ss_pred eeeEEEEEEEechhh--cccc---ccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHHcchHH---HHHHcCC----
Confidence 999999999999753 2222 466889999999999999999999999999999998764322 1123443
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhc--cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 007921 457 GARPWVYYTIYAFFVFLFNIFDIA--NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTI 534 (585)
Q Consensus 457 ~~~~~i~~ily~~~ii~Fs~f~i~--~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i 534 (585)
..|+|.++|++++++|||||.. .||||+||||||||++|||+||||+|+|||+|+++|+|++||++++++|++|++
T Consensus 302 --~~~~y~~~y~~lii~Fs~fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~ 379 (431)
T 3din_C 302 --GGFLYLLIYGLLVFFFTYFYSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYL 379 (431)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHTCTTHHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2489999999999999999944 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 007921 535 LDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 582 (585)
Q Consensus 535 ~~~~~~~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~ 582 (585)
++... +.++.+||||+||+||+++|++||+++++.+++|++++++
T Consensus 380 ~~~~~---g~~~~~gGTslLI~Vgv~l~~~~qi~s~~~~~~Y~g~~~~ 424 (431)
T 3din_C 380 VQGAI---KVNVWIGGTSALIAVGVALDIIQQMETHMVMRHYEGFIKK 424 (431)
T ss_dssp HTTTS---CCSCCTTHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTCC-
T ss_pred HHHHh---CCCccccchhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 87642 3336689999999999999999999999999999999975
No 5
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=6e-90 Score=743.04 Aligned_cols=402 Identities=16% Similarity=0.176 Sum_probs=318.4
Q ss_pred hHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccchh
Q 007921 135 LNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFF 213 (585)
Q Consensus 135 l~~~k~~~~~-~~~~~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SLf 213 (585)
||.+||+... ||+++|++++|+|+|++||++++++||+|++||+||+|.++. + .+.+++.++|++++|+|
T Consensus 1 ~~~~~p~~~~lP~v~~p~~~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~~-~--------~~~~~~~~~a~~~~sif 71 (436)
T 1rh5_A 1 MKKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-A--------IFEFWQTITASRIGTLI 71 (436)
T ss_dssp -CTTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-S--------CCTTHHHHHTCCTTBTT
T ss_pred CchhhHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-H--------HHHHHHHhhccccchHH
Confidence 4678888777 999999999999999999999999999999999999999765 2 12334445688999999
Q ss_pred hcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Q 007921 214 QLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTA 293 (585)
Q Consensus 214 sLGI~PyItAsII~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~~~~~~~~~~iv 293 (585)
+|||+||||||||||||++. ++.+++||||+||+|+|++|||+|+++|++||++++..+ .+. +.+..+.++++
T Consensus 72 aLGI~PyItAsII~QLL~g~--~~i~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~g-~~~----~~~~~~~~~~v 144 (436)
T 1rh5_A 72 TLGIGPIVTAGIIMQLLVGS--GIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAG-AFG----ILTPLLAFLVI 144 (436)
T ss_dssp TTTTHHHHHHHHHHHHHHHH--TTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSC----CCCHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHhhC--ceeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc----CCchHHHHHHH
Confidence 99999999999999999754 445889999999999999999999999999999987532 111 23444577899
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHH-------HHHHHHHhhhcCCCCcchHHHHHHHHHHH
Q 007921 294 FLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYK-------MLSQLLVFKYTAGSSVRWWPFMLGLLGVF 366 (585)
Q Consensus 294 l~LvaGs~il~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~-------~~~~~~~~~~~~g~~~~~~~~li~~l~i~ 366 (585)
++|++|+|++|||||+|||||+|||+|++|++||++++|+++.+ .++.. ..+. .++. . +..++++
T Consensus 145 l~L~~Gt~~lmwL~E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~G~i~~~~~~~-----~~~~-~~~~-~-l~~l~~~ 216 (436)
T 1rh5_A 145 IQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSL-----IQGV-PNIE-Y-IAPIIGT 216 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHT-----TTTC-CCGG-G-THHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHhcccchHHHHHHHH-----hccc-chHH-H-HHHHHHH
Confidence 99999999999999999999999999999999999999999877 54432 1221 1222 1 2233345
Q ss_pred HHHHHHhhheeceEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhC---ChhH
Q 007921 367 TIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG---SPFW 443 (585)
Q Consensus 367 llii~~iv~v~~~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~---~~~~ 443 (585)
++++++++++|+++|||||||++. + ++++|+|+|+||+|+||+|||++++++|++++++++ ..|.
T Consensus 217 l~v~~~vV~~~~~~rrIPvqyak~------~------g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~ 284 (436)
T 1rh5_A 217 IIVFLMVVYAECMRVEIPLAHGRI------K------GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPIL 284 (436)
T ss_dssp HHHHHHHHHHTTCEEEEECCCSSS------T------TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHhhcceEEEEEEEeccc------C------CccceeeeecccccchHHHHHHHHHHHHHHHHHHhcccCcchh
Confidence 556777899999999999999962 1 578999999999999999999999999999999863 1232
Q ss_pred ---------HHHHHHcCCCCCCCC----c-c-hHHHHHHHHHHHHHHHHH--h-ccChHHHHHHHHHcCCccccccCChh
Q 007921 444 ---------QHVKEILNPETSVGA----R-P-WVYYTIYAFFVFLFNIFD--I-ANLPKEIADYLNKMGARIPNVKPGKA 505 (585)
Q Consensus 444 ---------~~l~~~l~p~~sl~~----~-~-~i~~ily~~~ii~Fs~f~--i-~~~PkeIAe~Lkk~G~~IpGvRPGk~ 505 (585)
+++.+|++|+.+... + . |+|.++|++++++|+||| + ..||||+||||||||++|||+|||++
T Consensus 285 g~~~~~~~~~gl~yyl~pp~~~~~~~~~p~~~~~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRpG~~ 364 (436)
T 1rh5_A 285 GHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEK 364 (436)
T ss_dssp CCBCSSSBSSSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHH
T ss_pred hhcccccccccchhhcCChhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCCCch
Confidence 346678888653221 1 2 688999999999999999 4 46999999999999999999999999
Q ss_pred -hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 007921 506 -TIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 582 (585)
Q Consensus 506 -T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~~~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~ 582 (585)
|+|||+|+++|+|++||++++++|++|++++. ++ ||||+||+||+++|++||+++++.+++|+ .+||
T Consensus 365 tt~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~----~~-----gGTslLI~VgV~~~~~~qi~~~~~~~~Y~-~l~~ 432 (436)
T 1rh5_A 365 AIEHRLKRYIPPLTVMSSAFVGFLATIANFIGA----LG-----GGTGVLLTVSIVYRMYEQLLRERTSELHP-AIAK 432 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----TT-----CSHHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc-----CchhhhhHHHHHHHHHHHHHHHHHHHhhH-HHHH
Confidence 79999999999999999999999999999752 12 89999999999999999999999999998 6665
No 6
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=1.6e-89 Score=747.20 Aligned_cols=414 Identities=18% Similarity=0.243 Sum_probs=271.1
Q ss_pred hhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccch
Q 007921 134 FLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212 (585)
Q Consensus 134 ~l~~~k~~~~~-~~~~~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SL 212 (585)
|+|.+|++... ||+++|++++|+|+|++||++++++||+|++||+||+|.+.. | .+.+++.+.|.+++|+
T Consensus 3 ~~~~~~p~~~~lP~v~~P~~~~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~~~-~--------~~~~l~~~~Gg~~~Si 73 (482)
T 3mp7_A 3 ARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERIQ-D--------YFQFLRVVLAGRNGSI 73 (482)
T ss_dssp -----------------------CTTTHHHHHHHHHHHHHHHHSBCTTCCSSCC-C--------SCSSTTTTTCSCTTBT
T ss_pred HHHHHHHHHhhCCCccCccccccHHHHHHHHHHHHHHHHHHhhCCCCCcCcccc-c--------HHHHHHHhcCCCcccH
Confidence 67999999888 999999999999999999999999999999999999998743 1 2334555555579999
Q ss_pred hhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHH
Q 007921 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVT 292 (585)
Q Consensus 213 fsLGI~PyItAsII~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~~~~~~~~~~i 292 (585)
|+|||+||||||||||||+.. ++++++||||+||+|+|++|||+|+++|++||++++. ...++......+....+++
T Consensus 74 faLGI~PyITASII~QLL~~~--~l~~l~kege~gR~k~~~~tR~lti~la~iQa~~~v~-~~~~~~~~~~~~~~~~~~i 150 (482)
T 3mp7_A 74 LTLGIGPIVTAGIILQLLVGS--EIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWIL-GGAFGRVGVDVTYAIAVLM 150 (482)
T ss_dssp TSSTTHHHHHHHHHTTC-------------------------CHHHHHHHHHHHHHHHHH-SSSSSCC------CTHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHhc--cHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccccccccchHHHHHH
Confidence 999999999999999999976 8999999999999999999999999999999999874 3333221001223457889
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhh-hcCCCC-cchHHHH-----------
Q 007921 293 AFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFK-YTAGSS-VRWWPFM----------- 359 (585)
Q Consensus 293 vl~LvaGs~il~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~-~~~g~~-~~~~~~l----------- 359 (585)
+++|++|++++|||||+|||||+|||+||+|++||++++|+++.+......+.+ ...|.+ .+..+.+
T Consensus 151 vl~L~aGt~~lmwL~E~It~~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~l~~ 230 (482)
T 3mp7_A 151 ILQLAMGGIVLIILDELVSKWGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWG 230 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHhcchhhH
Confidence 999999999999999999999999999999999999999999764321100000 000000 2222111
Q ss_pred ----------HHHHHHHHHHHHHhhheeceEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHH
Q 007921 360 ----------LGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLA 429 (585)
Q Consensus 360 ----------i~~l~i~llii~~iv~v~~~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~ 429 (585)
+..++++++++++++|+|+++|||||||+|+ | +++|+|+|+||+|+||+|||+++++
T Consensus 231 ~~~~~lp~~~l~~l~~~l~v~~~vV~~q~~~rrIPvqyak~------~-------~~~~iPiKln~aGviPiIfassll~ 297 (482)
T 3mp7_A 231 AIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGV------T-------VRGSYPIRFLYVSNIPIILTFALYA 297 (482)
T ss_dssp SCCCSSSSCCHHHHHHHHHHHHHHHHHHHCCEEC-------------------------CEECSSSSTTHHHHHHHHHHH
T ss_pred HHhhccchhHHHHHHHHHHHHHHhheeEeeEEEEEEEeccc------c-------ccceeeEeecccCchHHHHHHHHHH
Confidence 2233345556777899999999999999863 1 4699999999999999999999999
Q ss_pred hHHHHHHHhCC---hhH-----------HHHHHHcCCCCCCCC--cc----hHHHHHHHHHHHHHHHHH--h-ccChHHH
Q 007921 430 FPSILASILGS---PFW-----------QHVKEILNPETSVGA--RP----WVYYTIYAFFVFLFNIFD--I-ANLPKEI 486 (585)
Q Consensus 430 ~p~~I~~~l~~---~~~-----------~~l~~~l~p~~sl~~--~~----~i~~ily~~~ii~Fs~f~--i-~~~PkeI 486 (585)
+|+++++++.+ +|. +++.+|++|+.++.. .. ++|.++|++++++||||| + ..||||+
T Consensus 298 ~p~~i~~~~~~~~~~~l~~~~~~~~~~~~g~~~~l~p~~s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~di 377 (482)
T 3mp7_A 298 NIQLWARVLDRLGHPWLGRFDPTTGSPISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSI 377 (482)
T ss_dssp HHHHHHHHHHTTSCCSSBCCCCTTSCCCCBSGGGSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGC
T ss_pred HHHHHHHHhhhccchhhhhhcccccccchhHHHHhCCcccHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999987632 121 235677888765431 12 368889999999999999 5 4589999
Q ss_pred HHHHHHcCCccccccCChh-hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHHH
Q 007921 487 ADYLNKMGARIPNVKPGKA-TIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRR 565 (585)
Q Consensus 487 Ae~Lkk~G~~IpGvRPGk~-T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~~~~~~~~~~ggTsLLIlVgvil~~~~ 565 (585)
||||||||++|||+||||+ |+|||+|+++|+|++||++++++|++|++++.. + ||||+||+||+++|++|
T Consensus 378 A~nlkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~L~~iavlp~~l~~~----g-----gGTslLI~VgV~~~~~~ 448 (482)
T 3mp7_A 378 ARQLQRAGLQIPGFRRDPRTLEKVLQRYIPYVTFWGSLTVALIAVLADFLGAL----G-----TGTGILLTVGILYRFYE 448 (482)
T ss_dssp CC--------CCTTTTTTSTTCC------CTHHHHHHHHHHHHHHHHHHHTCS----S-----CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCCcCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc----C-----CceeeeeeHHHHHHHHH
Confidence 9999999999999999997 799999999999999999999999999998632 2 89999999999999999
Q ss_pred HHHHHHhhhHHHHHHh
Q 007921 566 SYQAYNVMPSLSKALR 581 (585)
Q Consensus 566 qi~a~~~~~~y~~~l~ 581 (585)
|+++++.+++|+.+-|
T Consensus 449 qi~s~~~~~~Y~~l~~ 464 (482)
T 3mp7_A 449 EIAREQITEMFPALRK 464 (482)
T ss_dssp HHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHhhHHHHH
Confidence 9999999999996444
No 7
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=2.5e-86 Score=723.29 Aligned_cols=409 Identities=14% Similarity=0.172 Sum_probs=330.9
Q ss_pred chhhhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccc
Q 007921 131 KNRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELK 209 (585)
Q Consensus 131 ~~r~l~~~k~~~~~-~~~~~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~ 209 (585)
..||+|.+|++... ||+++|.+++|+|+|++||++++++||+ ++||+||+|.++..+ . .+.+.+++.+.|+++
T Consensus 3 ~~~~~~~~~p~~~~lPev~~P~~~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~~~----~-~~~~~~~~~~~a~~~ 76 (490)
T 2ww9_A 3 GFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATTPN----V-NDPIYFLRGVFGCEP 76 (490)
T ss_dssp CSCCCCCCCSSGGGSCCCCCCCCCCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTTTC----S-SCCCTTTHHHHTCCS
T ss_pred cchHHHHHHHHHHhCCcccCCCCCccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHhc----c-cCHHHHHHHHHcccc
Confidence 36788999999988 9999999999999999999999999999 999999999875311 0 123455556678899
Q ss_pred cchhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccccchhHH
Q 007921 210 LSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHV 289 (585)
Q Consensus 210 ~SLfsLGI~PyItAsII~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~~~~~~~~ 289 (585)
+|+|+|||+||||||||||||++. ++.+++||||+||+|+|++|||+|+++|++||++++... .++ .+.+....
T Consensus 77 ~sifaLGI~PyItASII~QLL~g~--~iipl~kege~gR~k~~~~tR~lti~la~iQa~~~~~~~-~~~---~~~~~~~~ 150 (490)
T 2ww9_A 77 RTLLEFGLFPNISSGLILQLLAGL--KVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAG-YFG---DDLSVVQI 150 (490)
T ss_dssp SSTTSSTTHHHHHHHHHHHHHHHH--TSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSS---CCCSTTHH
T ss_pred cHHHHHhhHHHHHHHHHHHHHhhC--ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc---CCccHHHH
Confidence 999999999999999999999653 333489999999999999999999999999999987533 332 23344457
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh-ccCCCcchhHhHHHHhhHHHHHHH--------------------HHHHHH-HHhhh
Q 007921 290 MVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLY--------------------KMLSQL-LVFKY 347 (585)
Q Consensus 290 ~~ivl~LvaGs~il~WL~E~Itk-~GIGnGiSLiI~~gIi~~lp~~l~--------------------~~~~~~-~~~~~ 347 (585)
++++++|++|++++|||||+||| ||+|||+||+|++||++++|+++. +.++.. .....
T Consensus 151 ~~ivl~L~~Gt~~lmwLgE~It~G~GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~ 230 (490)
T 2ww9_A 151 GLINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKT 230 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccc
Confidence 78999999999999999999999 999999999999999999999875 332221 00000
Q ss_pred cCCCCcchH-----HHHHHHHHHHHHHHHHhhheeceEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHH
Q 007921 348 TAGSSVRWW-----PFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVL 422 (585)
Q Consensus 348 ~~g~~~~~~-----~~li~~l~i~llii~~iv~v~~~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPII 422 (585)
..++..++. |.++ .+.+++++++++||+|+++|||||||+|+ | ++++|+|+|+||+|+||+|
T Consensus 231 ~~~~l~~~~~r~~lp~l~-~l~~~l~vi~~vV~~q~~~rrIPIqyak~------~------g~~s~lPlKln~aGviPiI 297 (490)
T 2ww9_A 231 FIGGIISAFNRDYLPNLT-TTIIVLAIAIIVCYLQSVRVELPIRSTRA------R------GTNNVYPIKLLYTGCLSVL 297 (490)
T ss_dssp CCCSCCCCCSSSSCCSHH-HHHHHHHHHHHHHHHTTCCEECCCBCSSS------S------SBCCCCEECHHHHTHHHHH
T ss_pred cccchhhHHhhccccHHH-HHHHHHHHHHHHheeeeeEEEEEEEEccc------C------CcCceeeeEeccccchHHH
Confidence 001110111 1222 33344556677899999999999999963 2 5789999999999999999
Q ss_pred HHHHHHHhHHHHHH----HhC----C--------hhH---------HHHHHHcCCCCCCCC--cc-hH----HHHHHHHH
Q 007921 423 TTTYLLAFPSILAS----ILG----S--------PFW---------QHVKEILNPETSVGA--RP-WV----YYTIYAFF 470 (585)
Q Consensus 423 fAssll~~p~~I~~----~l~----~--------~~~---------~~l~~~l~p~~sl~~--~~-~i----~~ily~~~ 470 (585)
||++++++|+++++ +++ + .|. +++.+|++|+.++.. .+ |+ |.++|+++
T Consensus 298 Fassll~~p~~i~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~p~~~~iY~~~~~~l 377 (490)
T 2ww9_A 298 FSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVT 377 (490)
T ss_dssp HHHHHHHHCSSSCSTTTHHHHHCCCCSSSCTTSBCCSCCSSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCccccccccchhccccccchhHHHHHHhCCccchhhhcccCchhhHHHHHHHHHH
Confidence 99999999988877 542 1 122 335566777655421 12 55 88889999
Q ss_pred HHHHHHHH--hc-cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 007921 471 VFLFNIFD--IA-NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFS 547 (585)
Q Consensus 471 ii~Fs~f~--i~-~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~~~~~~~~~ 547 (585)
+++|+||| ++ .||||+||||||||++|||+||| +|+|||+|+++|+|++||++++++|++|++++. ++
T Consensus 378 ii~Fs~fy~~i~g~np~dvA~nLkk~G~~IpGiRpG-~T~~yL~~vi~rit~~Ga~~L~~lavlp~~l~~----~g---- 448 (490)
T 2ww9_A 378 GIWFADKWQAISGSSARDVALEFKDQGITLMGRREQ-NVAKELNKVIPIAAVTGASVLSLITVIGESLGL----KG---- 448 (490)
T ss_dssp HHHHHHHHHHSCSSCHHHHHHHHHHHHHTSSSCCCC-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----CS----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC----
Confidence 99999999 45 59999999999999999999999 999999999999999999999999999999742 22
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhh
Q 007921 548 IGFTSVLIIVGSIIELRRSYQAYNVMP 574 (585)
Q Consensus 548 ~ggTsLLIlVgvil~~~~qi~a~~~~~ 574 (585)
||||+||+||+++|++||++++.+..
T Consensus 449 -gGTslLI~VgV~~~~~~qi~~e~~~~ 474 (490)
T 2ww9_A 449 -KAAGIVVGIAGGFSLLEVITIEYQQS 474 (490)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999998766
No 8
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=8e-83 Score=694.08 Aligned_cols=403 Identities=15% Similarity=0.180 Sum_probs=327.2
Q ss_pred hhhhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCcccccccccccccc
Q 007921 132 NRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKL 210 (585)
Q Consensus 132 ~r~l~~~k~~~~~-~~~~~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~ 210 (585)
.||+|.+||+... ||+++|.+|+|+|+|++||++++++||+|++||+||+|.++..| +++++++..|++++
T Consensus 3 ~~~l~~~~p~~~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~--------~~~~~~~~fa~~~~ 74 (476)
T 2wwb_A 3 IKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD--------PFYWMRVILASNRG 74 (476)
T ss_dssp SCCCCCCHHHHHHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSC--------CCHHHHHHHCSSCS
T ss_pred chHHHHHHHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccc--------cHHHHHHHHccccc
Confidence 5788999998888 99999999999999999999999999999999999999876322 35566665588999
Q ss_pred chhhcCchhHHHHHHHHHHHHh--HhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccccchhH
Q 007921 211 SFFQLGISPQIVASILMQVLCH--IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKH 288 (585)
Q Consensus 211 SLfsLGI~PyItAsII~QLL~~--~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~~~~~~~ 288 (585)
|+|+|||+||||||||||||++ ++|.+++++ ||+|+|++|||+|+++|++||++++..+. ++.. .+.+...
T Consensus 75 SifaLGI~PyItASII~QLL~g~~iip~~~~l~-----gR~k~~~~tR~lti~la~iQa~~~v~~g~-~~~~-~~~~~~~ 147 (476)
T 2wwb_A 75 TLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-----DRALFNGAQKLFGMIITIGQSIVYVMTGM-YGDP-SEMGAGI 147 (476)
T ss_dssp SSCSSSSTHHHHHHHHHHHHHHHCCCSCCSSSS-----CSSCHHHHHHHHHHHHHHHHHHHHHHHTS-SCCS-SCSCHHH
T ss_pred cHHHHhhHHHHHHHHHHHHHHhCCccccchhhc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-cCccHHH
Confidence 9999999999999999999954 688777764 89999999999999999999999865343 3321 2234456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-ccCCCcchhHhHHHHhhHHHHHHHHHH------------------HHHHHhhhcC
Q 007921 289 VMVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYKML------------------SQLLVFKYTA 349 (585)
Q Consensus 289 ~~~ivl~LvaGs~il~WL~E~Itk-~GIGnGiSLiI~~gIi~~lp~~l~~~~------------------~~~~~~~~~~ 349 (585)
.++++++|++|++++|||||+||| ||+|||+||+|++||++++.|+.++.. +.........
T Consensus 148 ~~~ivl~L~~Gt~~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~ 227 (476)
T 2wwb_A 148 CLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKV 227 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccc
Confidence 778999999999999999999999 999999999999999999955543221 1100000000
Q ss_pred CC----C-cchHHHHHHHHHHHHHHHHHhhheeceEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHH
Q 007921 350 GS----S-VRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTT 424 (585)
Q Consensus 350 g~----~-~~~~~~li~~l~i~llii~~iv~v~~~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfA 424 (585)
++ . .+-.|+++. +..+++++++++|+|+++|||||||++. + ++++|+|+|+||+|+||+|||
T Consensus 228 ~~l~~~~~r~~l~~~~~-ll~~~~v~~~vV~~q~~~rrIPv~yak~------~------g~~~~~PiKln~aGviPiIfa 294 (476)
T 2wwb_A 228 RALREAFYRQNLPNLMN-LIATIFVFAVVIYFQGFRVDLPIKSARY------R------GQYNTYPIKLFYTSNIPIILQ 294 (476)
T ss_dssp SSSSSCSSSSSHHHHHH-HHHHHHHHHHHHHHHHCCBCCCCCBCSS------S------SBCSCCCBCTTTSSHHHHHHH
T ss_pred cchhhhhhccccchHHH-HHHHHHHHhheeEEEEEEEEEEEEeccc------C------CccceeeeeeccccchHHHHH
Confidence 00 0 011223332 3334556677899999999999999962 1 578999999999999999999
Q ss_pred HHHHHhHHHHHHHh----C-Ch-------hHH-------------HHHHHcCCCCCCCC--cchHHHHHHHHHHHHHHHH
Q 007921 425 TYLLAFPSILASIL----G-SP-------FWQ-------------HVKEILNPETSVGA--RPWVYYTIYAFFVFLFNIF 477 (585)
Q Consensus 425 ssll~~p~~I~~~l----~-~~-------~~~-------------~l~~~l~p~~sl~~--~~~i~~ily~~~ii~Fs~f 477 (585)
++++++|+++++++ + +. |.. ++.+|++|+.++.. .+|+|.++|++++++|++|
T Consensus 295 ssll~~p~~i~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~f 374 (476)
T 2wwb_A 295 SALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAF 374 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCHHHHCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcchhhhhhhhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHHH
Confidence 99999999999986 2 21 321 17788988765542 3588999999999988887
Q ss_pred Hh----c---cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccc
Q 007921 478 DI----A---NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGF 550 (585)
Q Consensus 478 ~i----~---~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~~~~~~~~~~~~gg 550 (585)
|. + .||||+||||||||++|||+|| ++|+|||+|+++|+|++||++++++|++|++++.+ +||
T Consensus 375 yt~~Wv~i~g~np~dvA~~Lkk~G~~IpGiRp-~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l~~~---------~gG 444 (476)
T 2wwb_A 375 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRE-TSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAI---------GSG 444 (476)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHCTTTCCCCT-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS---------SCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCccCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cch
Confidence 53 3 4899999999999999999999 89999999999999999999999999999997521 389
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 007921 551 TSVLIIVGSIIELRRSYQAYNV 572 (585)
Q Consensus 551 TsLLIlVgvil~~~~qi~a~~~ 572 (585)
||+||+||++++++||++.+..
T Consensus 445 TslLI~Vgv~~~~~e~i~~e~~ 466 (476)
T 2wwb_A 445 TGILLAVTIIYQYFEIFVKEQS 466 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 9
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=41.51 E-value=16 Score=31.42 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.0
Q ss_pred cCCccccccCChhhHHHHHHhhh
Q 007921 493 MGARIPNVKPGKATIEYLTKIQA 515 (585)
Q Consensus 493 ~G~~IpGvRPGk~T~~YL~kvi~ 515 (585)
....|||.||||.-...+.+...
T Consensus 37 k~~~ipGFRkGKvP~~vi~k~yG 59 (109)
T 2nsc_A 37 QRVEIPGFRKGRIPKNVLKMKLG 59 (109)
T ss_dssp TTCCCTTSCTTCCCHHHHHHHHG
T ss_pred ccCCCCCcCCCCCCHHHHHHHHh
Confidence 35799999999988887777765
No 10
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=34.28 E-value=24 Score=30.88 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=19.0
Q ss_pred CCccccccCChhhHHHHHHhhhh
Q 007921 494 GARIPNVKPGKATIEYLTKIQAS 516 (585)
Q Consensus 494 G~~IpGvRPGk~T~~YL~kvi~r 516 (585)
...|||.||||.-...+.+....
T Consensus 41 ~v~ipGFRkGKvP~~vi~k~yG~ 63 (121)
T 1p9y_A 41 KVRIDGLRKGKVPMNIVAQRYGA 63 (121)
T ss_dssp TCCCTTSCTTCSCHHHHHHHHHH
T ss_pred hCccCCcCCCCCCHHHHHHHHHH
Confidence 47999999999888877777653
No 11
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=27.63 E-value=20 Score=30.91 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=23.6
Q ss_pred HHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHH
Q 007921 486 IADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGG 522 (585)
Q Consensus 486 IAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Gg 522 (585)
.-++++| ...|||.||||.-...+.+...+-++..-
T Consensus 30 ~~~~~~k-~~~ipGFRkGKvP~~vi~k~yG~~~v~~e 65 (112)
T 2d3o_1 30 VWAGLAR-DVRVPGFRPGKAPRKVIENRVGKGYVESQ 65 (112)
T ss_dssp HHHHHHT-TSCBTTBCTTCCCSTTHHHHTTTTSSHHH
T ss_pred HHHHHHh-hCCCCCcCCCCCCHHHHHHHhCHHHHHHH
Confidence 3344433 47999999999877777777654333333
Done!