RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 007921
(585 letters)
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 237 bits (607), Expect = 3e-73
Identities = 104/362 (28%), Positives = 173/362 (47%), Gaps = 29/362 (8%)
Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 270
S F LGI P I ASI+MQ+L + P L +L KEG +G +KI+ Y +++L A+++A+ +
Sbjct: 1 SIFALGIGPYITASIIMQLLTVVGPKLEKLDKEGEEGRKKIQQYTRYLTLVLALIQAIGI 60
Query: 271 ACYSLPYSIYAASHSVK----HVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 326
Y ++ + ++++ L G M + W+ + I++ G G G SLII G
Sbjct: 61 VLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFAG 120
Query: 327 ILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKL 385
I+ + + S L +AG + +L L + T+ + VV + E R++ +
Sbjct: 121 IVASIPWAIINLFSLLS----SAGGLLSILYLLLLL--LATLAVILLVVYLQEARRRIPI 174
Query: 386 QYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH 445
QY + + S Y+P +N +G+ P++ + LLA P +A LGS F
Sbjct: 175 QYAKRVVGGGRGQSS-------YLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLW 227
Query: 446 VKEILNPETSVGARPWVYYTIYAFFVFLFNIF--DIANLPKEIADYLNKMGARIPNVKPG 503
L +G+ VY Y + F+ F I PK+IA+ L K G IP ++PG
Sbjct: 228 PVSGLAYYLPIGS--PVYILFYIVLIIFFSYFYTAIGFNPKDIAENLKKSGGFIPGIRPG 285
Query: 504 KATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIEL 563
K+T +YL ++ F G + L ++A +L G TS+LI VG ++
Sbjct: 286 KSTEKYLNRVIPRLTFIGAIFLGLIAVLPDLLGAL-------GGFGGTSLLIAVGVALDT 338
Query: 564 RR 565
Sbjct: 339 YE 340
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 233 bits (598), Expect = 6e-71
Identities = 126/446 (28%), Positives = 207/446 (46%), Gaps = 43/446 (9%)
Query: 144 LNNAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELG 202
+ ++ FK E+R+R+ T +++ RIG +IP+PG D + SG + L
Sbjct: 1 MLKTLKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAAL-AQLFDQQSGGILGLF 59
Query: 203 DF---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWIS 259
+ GA + S F LGI P I ASI+MQ+L ++P L +L+KEG G KI Y +++
Sbjct: 60 NLFSGGALSRFSIFALGIMPYITASIIMQLLTVVIPKLEELKKEGEAGRRKINQYTRYLT 119
Query: 260 LGFAILEAVIVACY----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 315
+ A ++++ +A S + + L G M + W+ + I+E G
Sbjct: 120 VVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITERGI 179
Query: 316 GQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVV 375
G G SLII GI+ G + + A + L L+ +F V + V
Sbjct: 180 GNGISLIIFAGIVAGLPSAIGQTFEL-------ARTGSLSILVFLLLIVLFLAVIAFVVF 232
Query: 376 VTEGCRKVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFP 431
V + R++ +QY G K+ Y+P +N +G+ PV+ + +L FP
Sbjct: 233 VEQAQRRIPVQYAKRQVGRKMYGGQS---------SYLPLKVNMAGVIPVIFASSILLFP 283
Query: 432 SILASILGSPFW-QHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIA 487
+ +A GS W Q + L+P + +Y +YA + F F A N P+EIA
Sbjct: 284 ATIAQFFGSGSWLQWIANYLSPGS------PLYILLYALLIIFFTFFYTAIQFN-PEEIA 336
Query: 488 DYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFS 547
+ L K G IP ++PG+ T EYL K+ G + L+ +A IL + L F
Sbjct: 337 ENLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALLPEILQNAL---GVPFY 393
Query: 548 IGFTSVLIIVGSIIELRRSYQAYNVM 573
G TS+LI+VG ++ + ++ +
Sbjct: 394 FGGTSLLIVVGVALDTMKQIESQLMS 419
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 213 bits (545), Expect = 4e-63
Identities = 120/431 (27%), Positives = 200/431 (46%), Gaps = 25/431 (5%)
Query: 150 SFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAEL 208
FK E+R+R+ T +++ RIG FIP+PG + + + S + + GA
Sbjct: 12 PKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALS 71
Query: 209 KLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAV 268
+ S F LGI P I ASI+MQ+L P L +L KEG +G KI+ Y +++L A+++A+
Sbjct: 72 RGSIFALGIMPYITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQAL 131
Query: 269 IVACYSLPYSIYAAS---HSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICV 325
V + + ++ L G M + W+ + I++ G G G SLII
Sbjct: 132 GVV-LGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLMWLGEQITKRGIGNGISLIIFA 190
Query: 326 GILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKL 385
GI+ ++ ++ L G+ F+L L+ + + V V + R++ +
Sbjct: 191 GIVASLPSAIFGIIGAL-----PTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPI 245
Query: 386 QYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH 445
QY + Y+P +N +G+ PV+ + LL FPS +A LG+ +
Sbjct: 246 QYAKRQSYRGQS---------SYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAY 296
Query: 446 VKEILN-PETSVGARPWVYYTIYAFFVFLFNIF--DIANLPKEIADYLNKMGARIPNVKP 502
L ++ VY +Y + F+ F +I P+EIA+ L K G IP ++P
Sbjct: 297 YLSPLTSISDALSPGSPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRP 356
Query: 503 GKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIE 562
GK T +YL ++ F G L L ++A +L F G TS+LI+VG ++
Sbjct: 357 GKDTEKYLNRVIPRLTFIGALFLGLIAILPELLG---TAGGVPFYFGGTSLLIVVGVALD 413
Query: 563 LRRSYQAYNVM 573
+A +M
Sbjct: 414 TYEQIEAELLM 424
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated.
Length = 417
Score = 212 bits (543), Expect = 6e-63
Identities = 123/431 (28%), Positives = 195/431 (45%), Gaps = 44/431 (10%)
Query: 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF-----GAE 207
K E+ RL T L+++ R+G FIP+PG D L + L G
Sbjct: 7 KDELLNRLLFTLGLLLLIRLGTFIPVPGID-----HTQLYPSLSNNPLLNLLNTFSGGGF 61
Query: 208 LKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISLGFAILE 266
+ F LGI P I ASI++Q+L I+PSL +L+KE G G KI Y +++LG+AI++
Sbjct: 62 FVIGLFALGILPYINASIIIQLLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQ 121
Query: 267 AVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 326
++ + + L Y + ++ + L G+M + W+ + I+E G G GSSL+I
Sbjct: 122 SIGI-SFWLKP--YLFNWNLLLALEIVLALTSGSMIVLWLSELITEKGLGNGSSLLIFFN 178
Query: 327 ILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWA-VVVTEGCRKVKL 385
I++ + L S L + LL +T+ + + E RK+ L
Sbjct: 179 IVSNLPKLL---QSLLFSLSANI------TILSILLLLFLFFITLIGIIFLQEAIRKIPL 229
Query: 386 QYYGFKLASA---AREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPF 442
SA + Y+P +N +G+ P++ + LL P L +IL + F
Sbjct: 230 -------ISAKQLGKSSRL--ASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQF 280
Query: 443 WQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIF--DIANLPKEIADYLNKMGARIPNV 500
+ + S V Y + F+ F I PK+I++ L KM IP +
Sbjct: 281 LLPLLSLFLQLASFKILYLVLY---FVLILFFSYFYSTIVLNPKDISENLQKMAVSIPGI 337
Query: 501 KPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFS-IGFTSVLIIVGS 559
+PGKAT +YL K G L L+ +A +++ L F +G TS+LI+VG
Sbjct: 338 RPGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESVLN--LSVFKGLGTTSLLILVGV 395
Query: 560 IIELRRSYQAY 570
I+ R Q Y
Sbjct: 396 AIDTSRQIQTY 406
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit.
Members of this protein family are the SecY component of
the SecYEG translocon, or protein translocation pore,
which is driven by the ATPase SecA. This model does not
discriminate bacterial from archaeal forms [Protein
fate, Protein and peptide secretion and trafficking].
Length = 410
Score = 196 bits (500), Expect = 6e-57
Identities = 114/425 (26%), Positives = 192/425 (45%), Gaps = 32/425 (7%)
Query: 157 RRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--------GAEL 208
R +L T L+V+ RIG FIP+PG D S + + F GA
Sbjct: 1 REKLLFTLGLLVLFRIGTFIPIPGID--------ASAFQNLIQQNPIFGLLNTFSGGALG 52
Query: 209 KLSFFQLGISPQIVASILMQVLCHIVPSLVQLR-KEGLDGHEKIKSYIWWISLGFAILEA 267
++S F LGISP I ASI++Q+L VP L+QL+ KEG G KI +++L A +++
Sbjct: 53 QISIFALGISPYITASIIIQLLTGDVPPLLQLQKKEGEIGRRKINQLTRYLTLILAFIQS 112
Query: 268 VIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGI 327
+ + + Y ++ L G+M + W+ + I++ G G G SL+I GI
Sbjct: 113 LGIVMTGM--YGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITKYGIGNGISLLIFAGI 170
Query: 328 LTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQY 387
L + S ++ PF+L L+ + + V V + RK+ +Q
Sbjct: 171 AATIPSGLLQPTEVRQSKVRDLISFLQNLPFLLYLIATIIVFAV-VVFVQQARRKIPIQS 229
Query: 388 YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVK 447
+ + Y+P +N +G+ PV+ + LL+ P+ ++ L S
Sbjct: 230 AKRQGGRRGSQS-------TYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQG--GA 280
Query: 448 EILNPETSVGARPWVYYTIYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPGKA 505
LNP S+ + +Y + F+ F + P+++A L K G IP ++PGK
Sbjct: 281 WFLNPILSLSLSDPIGAILYLILIIFFSFFYVELQLNPEDMAKNLKKQGMFIPGIRPGKM 340
Query: 506 TIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRR 565
T +YL ++ F G L L ++A L + + +G TS+LI+VG I+ +
Sbjct: 341 TEKYLKRVIPRLTFVGSLFLGLIALLPNFLG-AIGGLPTSKGLGGTSLLIVVGVAIDTYK 399
Query: 566 SYQAY 570
++
Sbjct: 400 QLESE 404
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed.
Length = 434
Score = 125 bits (316), Expect = 4e-31
Identities = 99/425 (23%), Positives = 202/425 (47%), Gaps = 26/425 (6%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFF 213
+EIRR++ T ++++ RIG FIP+P + ++ + V G ++ G GA S F
Sbjct: 12 AEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKVQDQANVLGMLNVFGG-GALQHFSIF 70
Query: 214 QLGISPQIVASILMQVL-CHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 272
+GI+P I ASI++Q+L ++P + K+G G +K + + ++ A ++A+ +
Sbjct: 71 AVGITPYITASIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGM-- 128
Query: 273 YSLPYSIYAASHSVKHVMVTAFLLVCGAMT-----MSWICDTISESGFGQGSSLIICVGI 327
S ++ A + T +L + +T + W+ + I+ +G G G S++I G+
Sbjct: 129 -SYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLGEQITANGVGNGISMLIFAGL 187
Query: 328 LTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQ 386
+ ++ Q AG + + L+G+ + + V+ + + RK+ +Q
Sbjct: 188 VAAIPNVANQIYLQQF---QNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIPIQ 244
Query: 387 YYGFKLASAAREDSPITEVE-PYIPFNINPSGMQPVLTTTYLLAFPSILASIL-GSPFWQ 444
Y A A ++ + ++P +N +G+ PV+ + L P +A + S +
Sbjct: 245 Y-----AKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSK 299
Query: 445 HVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGK 504
+ L+ +G +Y + F + + + P+++A+ L K +P ++PGK
Sbjct: 300 WLVANLDFAHPIGMT--LYVGLIVAFTYFYAFIQVN--PEQMAENLKKQNGYVPGIRPGK 355
Query: 505 ATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELR 564
+T +Y+TKI F G + L ++ + + + IG TS+LIIVG +E
Sbjct: 356 STEQYVTKILYRLTFIGAIFLGAISILPLVFTK-IATLPPSAQIGGTSLLIIVGVALETM 414
Query: 565 RSYQA 569
++ ++
Sbjct: 415 KTLES 419
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed.
Length = 404
Score = 105 bits (263), Expect = 2e-24
Identities = 93/433 (21%), Positives = 177/433 (40%), Gaps = 58/433 (13%)
Query: 150 SFFKSEIRRRLFVTAVLIVISRIGYFIPLPGF---DRRLIPQDYLSFVSGSVDELGDFGA 206
F I +++ T ++ I +G I +P D + +L + + GD
Sbjct: 6 KFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGGHESFLKIAAANTG--GDLRT 63
Query: 207 ELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILE 266
L+ F LG+ P + + I++Q+ + L K+ ++ + + +L A+++
Sbjct: 64 ---LNIFSLGLGPWMTSMIILQLFSYR--KRDGLMKQTIEEQHYRERIL---TLIIAVIQ 115
Query: 267 AVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 326
++ V SLP S + +++ +LV G M + W+ D + G G G I+ V
Sbjct: 116 SLAVI-LSLPSK-ERISQTN--ILLNTLILVTGTMFLVWLSDLNARYGIG-GPMPIVLVS 170
Query: 327 ILTGYTET--LYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVK 384
++ + Y S ++ +L LL + T+ ++ + + E +
Sbjct: 171 MIKSIPQDVIEYIDASHIV-------------IILLILLVIITLFFLYFIELVE----YR 213
Query: 385 LQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQ 444
+ Y + + S Y+ +NP+G P++ + LL FP + ++ S F
Sbjct: 214 IPYNDIMNHNRFKMYS-------YLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPN 266
Query: 445 HVK-EILNPETSVGARPWVYYTIYAFFVFLFNI-FDIANL-PKEIADYLNKMGARIPNVK 501
+ S G+ V T+Y FL + F N+ K+IA + K G IP V
Sbjct: 267 NSGISADMDMLSFGSPLGV--TVYLILQFLLSYFFSFVNINTKQIAKDMLKSGNYIPGVY 324
Query: 502 PGKATIEYLTKIQASTRFWGGLLLSILA---TSSTILDHYLRRINEGFSIGFTSVLII-V 557
PGK T YL I ++G L ++++A T+ D +L I F+ ++ V
Sbjct: 325 PGKDTERYLNYIARRFSWFGALFVTVIAGIPLYFTLFDPHLSTE-----IYFSGQFMMFV 379
Query: 558 GSIIELRRSYQAY 570
G + +A
Sbjct: 380 GMSFNIADEIRAL 392
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2.
Members of this family are restricted to the Firmicutes
lineage (low-GC Gram-positive bacteria) and appear to be
paralogous to, and much more divergent than, the
preprotein translocase SecY. Members include the SecY2
protein of the accessory Sec system in Streptococcus
gordonii, involved in export of the highly glycosylated
platelet-binding protein GspB [Protein fate, Protein and
peptide secretion and trafficking].
Length = 395
Score = 92.1 bits (229), Expect = 5e-20
Identities = 86/427 (20%), Positives = 164/427 (38%), Gaps = 55/427 (12%)
Query: 156 IRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYL----SFVSGSVDELGDFGAELKLS 211
I +++ T +++I +G +IP+P + + QD SF ++ G G LS
Sbjct: 2 IYKKILFTCFILIIYVLGSYIPIPFVE--VSKQDMEGVKNSFFKIAIANTG--GNLTTLS 57
Query: 212 FFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGH-EKIKSYIWWISLGFAILEAVIV 270
F LG+ P + + I++Q+ + +G D K + Y ++ A+I
Sbjct: 58 IFSLGLGPWMTSMIILQLFSFT-------KSDGFDAQSPKEQQYRERF---LTLIIAIIQ 107
Query: 271 ACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTG 330
+ S ++++ +LV G + W+ D ++ G G GS I+ V +L
Sbjct: 108 GLAIIHSFTNKNGLSDFNMLLATLILVTGTCLLVWLADLNAKYGIG-GSMPIVLVSMLKN 166
Query: 331 YTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGF 390
++++ S W ++ LL + T+V ++ + E ++
Sbjct: 167 IPSNVFELFQ----------MSYIW---LIALLILLTLVALFLLAFIERAE-YRIPVNDI 212
Query: 391 KLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVK-EI 449
L + + S Y+P +NP+G + LL P + +LG F
Sbjct: 213 SLHNRSNLMS-------YLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSLINN 265
Query: 450 LNPETSVGARPWVYYTIYAFFVFLFNI-FDIANL-PKEIADYLNKMGARIPNVKPGKATI 507
+ S + + IY L + F N+ PKEI+ K G IP + PGK T
Sbjct: 266 WVFQFSFSSPVGIL--IYLILQMLLSYFFTFVNINPKEISKSFRKSGNYIPGIAPGKDTQ 323
Query: 508 EYLTKIQASTRFWGGLLLSILAT----SSTILDHYLRRINEGFSIGFTSVLIIVGSIIEL 563
YL ++ ++GG+ + + + H L + ++I G +
Sbjct: 324 RYLNRLARRFCWFGGVFNAFQLGIPLYFALFVPHLLT-----EAYIPGQFMMITGMSFNI 378
Query: 564 RRSYQAY 570
+
Sbjct: 379 ADEIRTI 385
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 38.7 bits (91), Expect = 0.009
Identities = 89/427 (20%), Positives = 152/427 (35%), Gaps = 80/427 (18%)
Query: 157 RRRLFVTAVLIVISRIGYF----IPLPGFDRRLIPQ-DYLSFVSGSVDELGDFGAELKLS 211
+ +L TA+++++ YF IPL G + + L + G FG +
Sbjct: 27 KEKLKWTAIVLIL----YFILTNIPLYGISQSSQDLFELLRIIFA-----GSFG-----T 72
Query: 212 FFQLGISPQIVASILMQVLCHIVPS-LVQLRKEGLDGHEKIKSYIWWISLGFAILEAV-- 268
QLGI P + A I++Q+L V S L+ L + + +++ LEA
Sbjct: 73 LLQLGIGPIVTAGIILQLL---VGSKLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPF 129
Query: 269 IVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG-- 326
++A P + A++ + ++ L G + + + + +S+ G G G SL I G
Sbjct: 130 VLAGAFGPATGLASTPLLALLIFLQLFL--GGILIILLDELVSKWGIGSGISLFILAGVS 187
Query: 327 --ILTG------YTETLY-----KMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWA 373
I G + L + S + T + L LLG+ T + ++
Sbjct: 188 QTIFVGLFNWLTGGQGLPVGFIPALFSAITSGNLTLALLLT--TRGLLLLGLITTIVIFL 245
Query: 374 VVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFN-INPSGMQPVLTTTYLLAFPS 432
+VV +V++ L+ + P I S + PV+ L A
Sbjct: 246 IVVYLESMRVEI-----PLSHGR-----VRGARGRYPLKFIYVSVL-PVILVRALQANIQ 294
Query: 433 ILASIL---GSPFWQHVKEILNPETS-----------------VGARPWVYYTIYAFFVF 472
+ +L G P S R +Y
Sbjct: 295 LFGQLLQRLGIPILGTYDSSGASPISGLAYYLSPPHSPYDWIQDPLRAIIYALFMIVLSI 354
Query: 473 LFNIF--DIANL-PKEIADYLNKMGARIPNVKPGKATIE-YLTKIQASTRFWGGLLLSIL 528
LF IF + L PK A L G +IP + IE L + GG ++ +L
Sbjct: 355 LFAIFWVETTGLDPKTQARQLQNSGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLL 414
Query: 529 ATSSTIL 535
A + +L
Sbjct: 415 AVLADLL 421
>gnl|CDD|218339 pfam04941, LEF-8, Late expression factor 8 (LEF-8). Late
expression factor 8 (LEF-8) is one of the primary
components of RNA polymerase produced by polyhedrosis
viruses. LEF-8 shows homology to the second largest
subunit of prokaryotic DNA-directed RNA polymerase.
Length = 748
Score = 30.1 bits (68), Expect = 3.5
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 97 NLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEI 156
N+E PP L + ++ +R N+T R K+ F+ FI +SFF E+
Sbjct: 310 NIEISPPVLKYRIGNEVVRIT--NDTMRQDMLKQKSDFVKFI----------DSFFHGEM 357
>gnl|CDD|206528 pfam14360, PAP2_C, PAP2 superfamily C-terminal. This family is
closely related to the C-terminal a region of PAP2.
Length = 72
Score = 27.1 bits (61), Expect = 6.0
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 334 TLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIV 369
T++ L+ L +++Y+ ++ ++L L+G F I+
Sbjct: 11 TVFTTLAFLFIWEYSPRWFLKVIAWLLSLIGYFLII 46
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.417
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,300,999
Number of extensions: 3036154
Number of successful extensions: 4001
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3932
Number of HSP's successfully gapped: 54
Length of query: 585
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 483
Effective length of database: 6,413,494
Effective search space: 3097717602
Effective search space used: 3097717602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (27.7 bits)