RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007921
(585 letters)
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane
protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Length = 429
Score = 221 bits (565), Expect = 3e-66
Identities = 129/445 (28%), Positives = 219/445 (49%), Gaps = 44/445 (9%)
Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
++ F+ E+R++ T ++ VI R+G IP+PG + + +D+L GSV L D
Sbjct: 3 EYLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEAL-RDFLKAFEGSVFALYDI 61
Query: 205 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISL 260
G +L+ F LG+ P I ASI+MQ+L +PSL +L KE G G KI Y +++L
Sbjct: 62 FSGGNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTL 121
Query: 261 GFAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 315
A ++++ +A + S + + +++T LV G M + WI D I+E G
Sbjct: 122 FVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGI 181
Query: 316 GQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVV 375
G G+SLII GI+ + + + + + +L ++ + + + V
Sbjct: 182 GNGASLIIFAGIVANFPNAVIQFYEK-------VKTGDIGPLTLLLIIALIIAIIVGIVY 234
Query: 376 VTEGCRKVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFP 431
V E R++ +QY G +L + + Y+P INP+G+ P++ LL P
Sbjct: 235 VQEAERRIPIQYPGRQVGRQLYAGRKT---------YLPIKINPAGVIPIIFAQALLLIP 285
Query: 432 SILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIAD 488
S L + + +PF + + ++ P Y +Y F+ F F A N P E+A+
Sbjct: 286 STLLNFVQNPFIKVIADMFQPGA------IFYNFLYVTFIVFFTYFYTAVLIN-PVELAE 338
Query: 489 YLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSI 548
L+K GA IP V+PG+ T++YL +I F+G L LS++A ++ + N F
Sbjct: 339 NLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWF---NIPFYF 395
Query: 549 GFTSVLIIVGSIIELRRSYQAYNVM 573
G T+ LI+VG ++ R + Y +
Sbjct: 396 GGTTALIVVGVALDTFRQIETYLIQ 420
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC,
protein-conducting-channel, membrane, prote transport,
translocation, transmembrane, transport; 3.20A {Thermus
thermophilus} PDB: 2zqp_Y
Length = 434
Score = 219 bits (560), Expect = 2e-65
Identities = 108/445 (24%), Positives = 184/445 (41%), Gaps = 43/445 (9%)
Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
A S + E+R+R+ T +++ R+G FIP PG D I Q++L G V + +
Sbjct: 3 KAFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKI-QEFLRTAQGGVFGIINL 61
Query: 205 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLG 261
G + S F LGI P I A+I+MQ+L +VP+L +L KEG +G I Y +
Sbjct: 62 FSGGNFERFSIFALGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIA 121
Query: 262 FAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFG 316
+ +A + + S V V G + W+ + I+E G G
Sbjct: 122 LGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITEYGIG 181
Query: 317 QGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVV 376
G+SLII GI+ + + + + + + L L + V
Sbjct: 182 NGTSLIIFAGIVVEWLPQILRTIGL---IRTGEVN----LVAFLFFLAFIVLAFAGMAAV 234
Query: 377 TEGCRKVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPS 432
+ R++ +QY G ++ YIP +N +G+ P++ +L P
Sbjct: 235 QQAERRIPVQYARKVVGGRVYGGQAT---------YIPIKLNAAGVIPIIFAAAILQIPI 285
Query: 433 ILASILG-SPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIAD 488
LA+ +P Q + NP I V LF A + PK IA+
Sbjct: 286 FLAAPFQDNPVLQGIANFFNPTR------PSGLFIEVLLVILFTYVYTAVQFD-PKRIAE 338
Query: 489 YLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSI 548
L + G IP ++PG+ T+++L I + WG L L ++ I+ + +
Sbjct: 339 SLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTG--IHSIAF 396
Query: 549 GFTSVLIIVGSIIELRRSYQAYNVM 573
+LI+VG ++ R ++ ++
Sbjct: 397 SGIGLLIVVGVALDTLRQVESQLML 421
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP-binding membrane,
nucleotide-binding, protein transport; HET: ADP; 4.50A
{Thermotoga maritima MSB8}
Length = 431
Score = 214 bits (548), Expect = 7e-64
Identities = 104/447 (23%), Positives = 206/447 (46%), Gaps = 53/447 (11%)
Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
A ++ FK E+R R+ T + +++ R+G +IP+PG + + ++ + G
Sbjct: 3 QAFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAW-GEIFRRIAETAGVAGIL 61
Query: 205 --------GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIW 256
GA + S F + ++P I ASI++Q+L ++PSL ++ +EG +G +K Y
Sbjct: 62 SFYDVFTGGALSRFSVFTMSVTPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTR 121
Query: 257 WISLGFAILEAVIVACY---SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISES 313
++L +A V+ S P + + ++ +++ ++ G M + W+ + I+E
Sbjct: 122 RLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMSMLAGTMFLLWLGERITEK 181
Query: 314 GFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWA 373
G G G S++I GI+ Y + + L + L+ V I
Sbjct: 182 GIGNGISILIFAGIVARYPSYIRQAYLGGLN-----------LLEWIFLIAVALITIFGI 230
Query: 374 VVVTEGCRKVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLA 429
++V + R++ +QY G ++ A Y+P +N G+ P++ + +++
Sbjct: 231 ILVQQAERRITIQYARRVTGRRVYGGAST---------YLPIKVNQGGVIPIIFASAIVS 281
Query: 430 FPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEI 486
PS +ASI + ++ + ++Y IY VF F F + P+EI
Sbjct: 282 IPSAIASITNNETLKN---LFRAGG------FLYLLIYGLLVFFFTYFYSVVIFD-PREI 331
Query: 487 ADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGF 546
++ + K G IP ++PG++T +YL ++ F G + L ++A ++ +
Sbjct: 332 SENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGAI---KVNV 388
Query: 547 SIGFTSVLIIVGSIIELRRSYQAYNVM 573
IG TS LI VG +++ + + + VM
Sbjct: 389 WIGGTSALIAVGVALDIIQQMETHMVM 415
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein,
nucleotide-binding, PR biosynthesis, translation,
zinc-finger, 70S ribosome, ribos translocon; 7.10A
{Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Length = 435
Score = 214 bits (548), Expect = 1e-63
Identities = 114/436 (26%), Positives = 195/436 (44%), Gaps = 44/436 (10%)
Query: 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKLS 211
E++RRL +++ RIG FIP+PG D ++ L G++ E+ + GA + S
Sbjct: 11 ELKRRLLFVIGALIVFRIGSFIPIPGIDAAVL-AKLLEQQRGTIIEMFNMFSGGALSRAS 69
Query: 212 FFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVA 271
F LGI P I ASI++Q+L + P+L +++KEG G KI Y + +L AI +++ +A
Sbjct: 70 IFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIA 129
Query: 272 CYSLPYSIYAA---SHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGIL 328
+ LV G M + W+ + I+E G G G S+II GI+
Sbjct: 130 TGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIV 189
Query: 329 TGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQY- 387
G + + Q A + +L + + VT + V V G R++ + Y
Sbjct: 190 AGLPPAIAHTIEQ-------ARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRIVVNYA 242
Query: 388 ---YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS---- 440
G ++ +A ++P +N +G+ P + + ++ FP+ +AS G
Sbjct: 243 KRQQGRRVYAAQST---------HLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGW 293
Query: 441 PFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIADYLNKMGARI 497
+ + L P +Y +YA + F F A N P+E AD L K GA +
Sbjct: 294 NWLTTISLYLQPGQ------PLYVLLYASAIIFFCFFYTALVFN-PRETADNLKKSGAFV 346
Query: 498 PNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIV 557
P ++PG+ T +Y+ K+ G L ++ + + + F G TS+LI+V
Sbjct: 347 PGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAM---KVPFYFGGTSLLIVV 403
Query: 558 GSIIELRRSYQAYNVM 573
I++ Q +
Sbjct: 404 VVIMDFMAQVQTLMMS 419
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1
PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Length = 436
Score = 167 bits (426), Expect = 3e-46
Identities = 69/443 (15%), Positives = 136/443 (30%), Gaps = 60/443 (13%)
Query: 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212
+ + +L T +++V+ I I + ++ F A +
Sbjct: 20 EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI--PAIFEFWQT-------ITASRIGTL 70
Query: 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 272
LGI P + A I+MQ+L + ++Q+ + + +S+ +EAV+
Sbjct: 71 ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFV- 127
Query: 273 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYT 332
+ + + + G++ + ++ + +S+ G G G L I G+
Sbjct: 128 ----GAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 183
Query: 333 ETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 392
L F + V ++ ++G IV + V ++ L + K
Sbjct: 184 VGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTI-IVFLMVVYAECMRVEIPLAHGRIKG 242
Query: 393 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASIL------------GS 440
A P PV+ L A + L G
Sbjct: 243 AVG------------KYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGG 290
Query: 441 PFWQHVKEILNPETSVGA------RPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLN 491
+ L+ + + VY +F IF + PK +A +
Sbjct: 291 RAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIG 350
Query: 492 KMGARIPNVKPGKATIEY-LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGF 550
+G I + + IE+ L + + LAT + + G G
Sbjct: 351 SLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFI---------GALGGG 401
Query: 551 TSVLIIVGSIIELRRSYQAYNVM 573
T VL+ V + +
Sbjct: 402 TGVLLTVSIVYRMYEQLLRERTS 424
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 482
Score = 165 bits (420), Expect = 4e-45
Identities = 81/487 (16%), Positives = 153/487 (31%), Gaps = 78/487 (16%)
Query: 133 RFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYL 191
+ I L + +R R T V +++ + IP+ G R+ QDY
Sbjct: 2 GARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERI--QDYF 59
Query: 192 SFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKI 251
F+ A S LGI P + A I++Q+L + +++L +
Sbjct: 60 QFLRV-------VLAGRNGSILTLGIGPIVTAGIILQLL--VGSEIIKLDLANPEDRRFY 110
Query: 252 KSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS 311
++ S+ EA + + + ++ L G + + + + +S
Sbjct: 111 QALQRVFSVFMCFFEAAVWI-LGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVS 169
Query: 312 ESGFGQGSSLIICVGILTGYTETLYKMLSQ---------------------LLVFKYTAG 350
+ G G G SL I G+ L+ + K
Sbjct: 170 KWGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLW 229
Query: 351 SSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIP 410
++ +L V + ++ +VV +V++ L V P
Sbjct: 230 GAIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIP-----LGYRGV------TVRGSYP 278
Query: 411 FNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEI--------------LNPETSV 456
P++ T L A + A +L + + P ++
Sbjct: 279 IRFLYVSNIPIILTFALYANIQLWARVLDRLGHPWLGRFDPTTGSPISGFVLYVIPPRNI 338
Query: 457 GA------RPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLNKMGARIPNVKPGKATI 507
+ R VY + F LF + + IA L + G +IP + T+
Sbjct: 339 FSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTL 398
Query: 508 E-YLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRS 566
E L + FWG L ++++A + L G T +L+ VG +
Sbjct: 399 EKVLQRYIPYVTFWGSLTVALIAVLADFL---------GALGTGTGILLTVGILYRFYEE 449
Query: 567 YQAYNVM 573
+
Sbjct: 450 IAREQIT 456
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 132 bits (332), Expect = 2e-33
Identities = 67/489 (13%), Positives = 148/489 (30%), Gaps = 93/489 (19%)
Query: 133 RFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYL 191
+FL I+ +L + K + + ++ TA+ + I + IPL G +
Sbjct: 4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 63
Query: 192 SFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKI 251
A + + +LGISP + + ++MQ+L V +
Sbjct: 64 WMRV--------ILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKD---RALF 112
Query: 252 KSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS 311
+ I ++++ + + ++ L + + + + +
Sbjct: 113 NGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLIT--IQLFVAGLIVLLLDELLQ 170
Query: 312 ES-GFGQGSSLIICVGILT--------------GYTETLYKMLSQLLVFKYTAGSSVRWW 356
+ G G G SL I I G + L T VR
Sbjct: 171 KGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRAL 230
Query: 357 ------PFMLGLLGVFTIVTMWAVVV--TEGCRKVKLQYYGFKLASAAREDSPITEVEPY 408
+ L+ + + ++AVV+ + ++ ++
Sbjct: 231 REAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYN------------T 278
Query: 409 IPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH----------------------- 445
P + + P++ + L++ +++ +L + F +
Sbjct: 279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPV 338
Query: 446 --VKEILNPETSVGA------RPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLNKMG 494
+ L+P S G+ VY F+ I K++A L +
Sbjct: 339 GGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398
Query: 495 ARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL 554
+ + + L + + +GGL + L+ + L G T +L
Sbjct: 399 MVMRGHRETS-MVHELNRYIPTAAAFGGLCIGALSVLADFL---------GAIGSGTGIL 448
Query: 555 IIVGSIIEL 563
+ V I +
Sbjct: 449 LAVTIIYQY 457
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 124 bits (311), Expect = 2e-30
Identities = 70/518 (13%), Positives = 156/518 (30%), Gaps = 100/518 (19%)
Query: 129 MYKNRFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIP 187
M R ++ ++ + +L F K ++ T +I PL G +P
Sbjct: 1 MSGFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVG-----LP 54
Query: 188 QDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDG 247
+ V+ + L + + G+ P I + +++Q+L ++++ +
Sbjct: 55 KATTPNVNDPIYFLRGVFGCEPRTLLEFGLFPNISSGLILQLLA--GLKVIKVNFKIQSD 112
Query: 248 HEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWIC 307
E +S ++ ++ I + SV + + F LV + + +
Sbjct: 113 RELFQSLTKVFAIVQYVILTNIFIFAGY----FGDDLSVVQIGLINFQLVGAGIFTTLLA 168
Query: 308 DTISES-GFGQGSSLIICVGILT-----------------------GYTETLYKMLSQLL 343
+ I + GF G+ +I V I T G L + L
Sbjct: 169 EVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKH 228
Query: 344 VFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVV--TEGCRKVKLQYYGFKLASAAREDSP 401
S ++ L ++ + +V ++ ++ + +
Sbjct: 229 KTFIGGIISAFNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNN------ 282
Query: 402 ITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPF------------------- 442
P + +G VL + +L + I A +L
Sbjct: 283 ------VYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENA 336
Query: 443 ------WQHVKEILNPETSVGARPW---VYYTIYAFFVFLFNIF------DIANL-PKEI 486
+L P TS + + Y+ F+ + I+ I+ +++
Sbjct: 337 NNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDV 396
Query: 487 ADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGF 546
A G + + + + L K+ G +LS++ L G
Sbjct: 397 ALEFKDQGITLMGRRE-QNVAKELNKVIPIAAVTGASVLSLITVIGESL---------GL 446
Query: 547 SIGFTSVLIIVGSIIEL----RRSYQAYNVMPSLSKAL 580
+++ + L YQ +L++ L
Sbjct: 447 KGKAAGIVVGIAGGFSLLEVITIEYQQSGGQSALNQVL 484
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 8e-12
Identities = 113/654 (17%), Positives = 196/654 (29%), Gaps = 219/654 (33%)
Query: 1 MEATLL---SSHHFTPQL---FT----------------TTPVKLGG---GHVLADNRFC 35
+E LL +S QL F TTP +L G G+V +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV---SSLV 72
Query: 36 HPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRAN-----------------KRYSV--- 75
P F V L +L + K +
Sbjct: 73 EPSKVGQFDQVLNLCLTE-------FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 76 -YSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDS------QGLRDVTDNETF---RS 125
++ + + +++SAL AV + QG ++ F R
Sbjct: 126 YITARIMAKRPFDKKSNSAL---FRAVG---EGNAQLVAIFGGQG----NTDDYFEELRD 175
Query: 126 KPKMYKNRFLNFIRLSS-VLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRR 184
+ Y + I+ S+ L+ + +E ++F T L ++ + P
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAE---KVF-TQGLNILEWLENPSNTP----- 226
Query: 185 LIPQDYL--SFVSG---SVDELGDFGAELKLSFFQLGISPQIVASILMQVLCH----IVP 235
+DYL +S V +L + K LG +P + S L H +
Sbjct: 227 --DKDYLLSIPISCPLIGVIQLAHYVVTAK----LLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 236 SLVQLRKEGLDGHEKIKSYI---WWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVT 292
+ ++ I ++I G EA SLP SI S + +
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFI--GVRCYEAY--PNTSLPPSILEDSLENNEGVPS 336
Query: 293 AFLLVCGAMTMSWICDTISE--SGFGQGSSLIICV--G----ILTGYTETLYKMLSQLLV 344
L + +T + D +++ S G + I + G +++G ++LY + L
Sbjct: 337 PMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 345 FKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITE 404
K +G PF +E RK+K F L P+
Sbjct: 396 AKAPSGLDQSRIPF------------------SE--RKLKFS-NRF-L--------PVAS 425
Query: 405 VEPYIPFNINPSGMQPVLTTTYLL-AFPSILASILGSPFWQHVKEILNPETSVGARPWVY 463
PF+ + L+ A I ++ + + K+I P VY
Sbjct: 426 -----PFH-----------SHLLVPASDLINKDLVKNNVSFNAKDIQIP---------VY 460
Query: 464 YTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGL 523
T F+ D+ L I++ + R+P V W
Sbjct: 461 DT--------FDGSDLRVLSGSISERIVDCIIRLP-V------------------KWE-- 491
Query: 524 LLSILATSST-ILD----------HYLRRINEGFSIGFTSVLIIVGSIIELRRS 566
+ +T ILD R +G T V +IV +++
Sbjct: 492 --TTTQFKATHILDFGPGGASGLGVLTHRNKDG-----TGVRVIVAGTLDINPD 538
Score = 35.8 bits (82), Expect = 0.043
Identities = 39/166 (23%), Positives = 54/166 (32%), Gaps = 48/166 (28%)
Query: 431 PSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFF--VFLFNIFDI----ANLPK 484
P+ A ++G F +V ++ P VG V F +L DI A L +
Sbjct: 54 PTTPAELVGK-FLGYVSSLVEPS-KVGQFDQVLNLCLTEFENCYLEGN-DIHALAAKLLQ 110
Query: 485 EIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINE 544
E L K I N Y+T + R S++ L R + E
Sbjct: 111 ENDTTLVKTKELIKN---------YITARIMAKR-------PFDKKSNSAL---FRAVGE 151
Query: 545 G----FSI--GFTSVLIIVGSII----ELRRSYQAYNVMPSLSKAL 580
G +I G G+ ELR YQ Y L L
Sbjct: 152 GNAQLVAIFGGQ-------GNTDDYFEELRDLYQTY---HVLVGDL 187
Score = 30.4 bits (68), Expect = 2.0
Identities = 53/320 (16%), Positives = 95/320 (29%), Gaps = 117/320 (36%)
Query: 244 GLDGHEKIKS--YIW-------WISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAF 294
G+D ++ K+ +W + GF+IL+ IV + +I+ K +
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILD--IVINNPVNLTIHFGGEKGKRI----- 1684
Query: 295 LLVCGAMTMSWICDTISESGFGQGSSLIICVGI---LTGYT-----ETLYK--------M 338
+ I +TI + G+ + I I T YT L
Sbjct: 1685 ----RENYSAMIFETIVD---GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 339 LSQLLVFK------------YTAGSSVRWWPFMLG----LL---GVFTIVTMWAVVVTEG 379
L + F+ AG S LG L V +I ++
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHS-------LGEYAALASLADVMSIESL-------- 1782
Query: 380 CRKVKLQYY-GFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASIL 438
V++ +Y G + A D Y INP + + L +
Sbjct: 1783 ---VEVVFYRGMTMQVAVPRDE--LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 439 GSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIF--------DIANLPKEIADYL 490
G + EI+N +N+ D+ L + + L
Sbjct: 1838 GW-----LVEIVN----------------------YNVENQQYVAAGDLRAL-DTVTNVL 1869
Query: 491 NKMGAR-IPNVK-PGKATIE 508
N + + I ++ ++E
Sbjct: 1870 NFIKLQKIDIIELQKSLSLE 1889
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 3e-06
Identities = 89/634 (14%), Positives = 182/634 (28%), Gaps = 174/634 (27%)
Query: 9 HHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSR 68
HH F T + +L+ FV + + V + + LS+
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFE-------DAFVD------NFDCKDVQDMPKSILSK 48
Query: 69 ANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDN-----ETF 123
+ + S D V + L L + + + + LR N
Sbjct: 49 EEIDHIIMSKD-------AVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPI 98
Query: 124 RSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDR 183
+++ + +I L N + F K + R + +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-------------L 145
Query: 184 RLIPQDYLSFVSG------SV---DELGDFGAELKLSF--FQLGI----SPQIVASILMQ 228
L P + + G + D + + K+ F F L + SP+ V +L Q
Sbjct: 146 ELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-Q 203
Query: 229 VLCH-IVPSLVQLR-------------KEGLDGHEKIKSY---------IW--WISLGFA 263
L + I P+ + L K K Y +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK------ 257
Query: 264 ILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLII 323
A ++C L + + VT FL A T + I
Sbjct: 258 AWNAFNLSCKILLTTRFKQ--------VTDFL---SAATTTHISLDHHSMTLTPDEVK-- 304
Query: 324 CVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKV 383
+L Y + + L + ++ + P L ++ +
Sbjct: 305 --SLLLKYLDCRPQDLPREVL----TTN-----PRRLSIIA--------ESIRDGLATWD 345
Query: 384 KLQYYGFKLASAAREDSPITEVEP------YIPFNINPSGMQPVLTTTYLLAFPSILASI 437
++ + E S + +EP + ++ P + P+IL S+
Sbjct: 346 NWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSA-HI---------PTILLSL 394
Query: 438 LGSPFWQHVKE-----ILNP--ETSVGARPWVYYTIY---AFFVFLFNIFDIANLPKEIA 487
+ W V + ++N + S+ + TI + + + L + I
Sbjct: 395 I----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 488 DYLNKMGARIPNVKPGKATIEY--------LTKIQASTRFWGGLLLSILATSSTILD-HY 538
D+ N + +Y L I+ R L ++ LD +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM---TLFRMV-----FLDFRF 502
Query: 539 LRR--INEGFSIGFTSVLIIVGSIIELRRSYQAY 570
L + ++ + + ++ ++ +L+ Y+ Y
Sbjct: 503 LEQKIRHDSTAWNASGSIL--NTLQQLKF-YKPY 533
Score = 35.6 bits (81), Expect = 0.058
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 51/168 (30%)
Query: 411 FNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFF 470
FN+ + +LTT + + A+ H L P+ + +
Sbjct: 262 FNL---SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--------LLLKY 310
Query: 471 VFLFNIFDIANLPKEIAD----YLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLS 526
+ + +LP+E+ L+ + I + G AT + + L +
Sbjct: 311 L---DC-RPQDLPREVLTTNPRRLSIIAESI---RDGLATWDNWKHVNCDK------LTT 357
Query: 527 ILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMP 574
I+ +S +L+ E R+ + +V P
Sbjct: 358 IIESSLNVLEPA-----------------------EYRKMFDRLSVFP 382
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.15
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 7/26 (26%)
Query: 490 LNKMGARI----PNVKPG---KATIE 508
L K+ A + + P KAT+E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 31.0 bits (70), Expect = 1.2
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 471 VFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKI 513
V L ++IA + L+++G R+ G A + +
Sbjct: 206 VNLIGEYNIAGEFWHVLPLLDELGLRVLCTLAGDARYREVQTM 248
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding,
T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP:
b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Length = 573
Score = 31.1 bits (70), Expect = 1.3
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 131 KNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDY 190
K+ + L AES + R LI+ G F PL GF + DY
Sbjct: 11 KDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMN---GGFSPLEGFMNQ---ADY 64
Query: 191 LS 192
Sbjct: 65 DR 66
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM
CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 533
Score = 30.3 bits (68), Expect = 2.2
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 471 VFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKI 513
+ + ++I E+ L K+G + G AT E +
Sbjct: 209 INVLGEYNIGGDAWEMDRVLEKIGYHVNATLTGDATYEKVQNA 251
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral
membrane protein, prelami processing, ageing, progeria;
HET: PC1; 3.40A {Homo sapiens}
Length = 482
Score = 29.9 bits (66), Expect = 2.4
Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 11/164 (6%)
Query: 206 AELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAIL 265
+ SF+ S IL L +P L +L Y SL F +L
Sbjct: 73 DKSTFSFWSGLYSETEGTLIL---LFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLL 129
Query: 266 EAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQ--GSSLII 323
+ A LP+S+Y + L ++ D I + Q +
Sbjct: 130 ATLFSALAGLPWSLYNTFVIEEKHGFNQQTL------GFFMKDAIKKFVVTQCILLPVSS 183
Query: 324 CVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFT 367
+ + + + + L + + ++ L FT
Sbjct: 184 LLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFT 227
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and
degradation of murein sacculus and peptidog infectious
diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Length = 454
Score = 28.6 bits (65), Expect = 6.1
Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 3/16 (18%)
Query: 485 EI---ADYLNKMGARI 497
EI A++LN+MGAR+
Sbjct: 215 EIVDLANFLNQMGARV 230
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Length = 492
Score = 28.6 bits (64), Expect = 6.5
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 471 VFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKI 513
V + ++I L +MG R G +I +
Sbjct: 223 VAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELT 265
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 28.7 bits (65), Expect = 6.7
Identities = 4/16 (25%), Positives = 7/16 (43%), Gaps = 3/16 (18%)
Query: 485 EI---ADYLNKMGARI 497
++ L +GA I
Sbjct: 220 DVTDMVTVLRDLGADI 235
>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP:
a.45.1.1 c.47.1.5
Length = 221
Score = 28.0 bits (63), Expect = 6.9
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 221 IVASILMQVLCHIVP----SLVQLRKEGLDGHEKIKSYIWWISLGFAILEA 267
+ + VL I P ++++ +E ++ EK I+ GF LE
Sbjct: 99 VNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEK 149
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 28.5 bits (64), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 479 IANLPKEIADYLNKMGARIPNVKPGKATI 507
I+NL K++A L + R+ V PGK T+
Sbjct: 136 ISNLAKDLARSLAVISVRVVEVIPGKTTV 164
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 28.4 bits (64), Expect = 7.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 479 IANLPKEIADYLNKMGARIPNVKPGKATI 507
I+NL +++A L+ + R+ V PGK +
Sbjct: 89 ISNLSRDLARSLSTVAVRVVEVIPGKPYV 117
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan,
structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus} PDB: 3swg_A*
Length = 425
Score = 28.2 bits (64), Expect = 8.6
Identities = 6/16 (37%), Positives = 9/16 (56%), Gaps = 3/16 (18%)
Query: 485 EI---ADYLNKMGARI 497
E+ + L KMGA +
Sbjct: 198 EVMDLIEVLKKMGAHV 213
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A
1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A*
1uae_A* 3kqj_A* 3kr6_A* ...
Length = 419
Score = 28.2 bits (64), Expect = 8.6
Identities = 7/16 (43%), Positives = 11/16 (68%), Gaps = 3/16 (18%)
Query: 485 EI---ADYLNKMGARI 497
EI A++L +GA+I
Sbjct: 190 EIVDTANFLVALGAKI 205
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.417
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,979,626
Number of extensions: 546010
Number of successful extensions: 1198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1125
Number of HSP's successfully gapped: 30
Length of query: 585
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 486
Effective length of database: 3,937,614
Effective search space: 1913680404
Effective search space used: 1913680404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)