RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 007921
         (585 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score =  184 bits (468), Expect = 7e-53
 Identities = 68/433 (15%), Positives = 140/433 (32%), Gaps = 60/433 (13%)

Query: 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212
           +   + +L  T +++V+  I   I +     +        F            A    + 
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQ--IPAIFEFWQT-------ITASRIGTL 69

Query: 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 272
             LGI P + A I+MQ+L  +   ++Q+     +     +     +S+    +EAV+   
Sbjct: 70  ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVL--- 124

Query: 273 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYT 332
           +    +    +  +  +++    +  G++ + ++ + +S+ G G G  L I  G+     
Sbjct: 125 FVGAGAFGILTPLLAFLVI--IQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 182

Query: 333 ETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 392
                    L  F     S ++  P +  +  +   + ++ +VV   C +V++     + 
Sbjct: 183 VGALGPEGYLWKFL---NSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGR- 238

Query: 393 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEI--- 449
                    I       P         PV+    L A   +    L       +      
Sbjct: 239 ---------IKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGG 289

Query: 450 ---------------LNPETSVGARPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLN 491
                          L+   S      VY         +F IF +      PK +A  + 
Sbjct: 290 RAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIG 349

Query: 492 KMGARIPNVKPGKATIEY-LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGF 550
            +G  I   +  +  IE+ L +            +  LAT +  +         G   G 
Sbjct: 350 SLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFI---------GALGGG 400

Query: 551 TSVLIIVGSIIEL 563
           T VL+ V  +  +
Sbjct: 401 TGVLLTVSIVYRM 413


>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId:
           562]}
          Length = 343

 Score = 28.8 bits (63), Expect = 1.9
 Identities = 4/48 (8%), Positives = 12/48 (25%)

Query: 460 PWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATI 507
               +           +F+  N  +    + +  G +   +      I
Sbjct: 262 CAGCFNAPTALGSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFI 309


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,176,986
Number of extensions: 100444
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 9
Length of query: 585
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 495
Effective length of database: 1,171,896
Effective search space: 580088520
Effective search space used: 580088520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)