BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007922
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MC8|A Chain A, Potra1-3 Of The Periplasmic Domain Of Omp85 From Anabaena
pdb|3MC9|A Chain A, Potra1-2 Of The Periplasmic Domain Of Omp85 From Anabaena
pdb|3MC9|B Chain B, Potra1-2 Of The Periplasmic Domain Of Omp85 From Anabaena
Length = 316
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 110 PAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACR 169
PA + +T + P++ + E RVL+SEVLVR + G+ +LET+ ++ +
Sbjct: 35 PAPAPGTTPGTENFNTPNATPETTEPRVLVSEVLVRPQSGQLT--PELETQVYNVIR-TQ 91
Query: 170 ANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCE---GA 226
T ++QED++ I +G+F + DT G+R+ F V+PN + + G
Sbjct: 92 PGRTTTRSQLQEDINAIFGTGFFSNVQASPEDTPLGVRVSFIVQPNPVLSKVEIQANPGT 151
Query: 227 NV---LPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERG--LFGMVSGVEILSGGI 281
NV LP ++ FR YGK++N+R L E I + Y ++G L +V ++ G+
Sbjct: 152 NVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSENGV 211
Query: 282 IRLQVAEAEVNNISIRFLDRK------TGEPTKGKTRPETILRQLTTKKGQVYSMLQGKR 335
+ LQVAE V NIS+RF +++ G+P +G+T+ I R++ K GQV++ ++
Sbjct: 212 VTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFNRNTVQK 271
Query: 336 DVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVER 371
D++ V G+ EDV++ P D KV++++NVVER
Sbjct: 272 DLQRVFGTGLFEDVNVSLDPGTDPTKVNVVVNVVER 307
>pdb|2X8X|X Chain X, Structure Of The N-Terminal Domain Of Omp85 From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus
Length = 235
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 128/241 (53%), Gaps = 10/241 (4%)
Query: 133 DEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYF 192
DE +VLI+EV+V +G E + L + + + R S T ++Q+D + I +G+F
Sbjct: 1 DEPKVLIAEVVV---EGATPELEQLVYQVI----STRPGSTTTRTQLQQDTNAIFATGFF 53
Query: 193 CSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLD 252
V DT G+R+ F V P + G VL + V + F G+ +N+R L
Sbjct: 54 ADVNAVPRDTPLGVRITFVVRPYPVLRAVQVAGNQVLTQEKVNEIFAPQIGRTLNLRELQ 113
Query: 253 EVITSINGWYMERG-LFGMVSGV-EILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGK 310
I IN +Y + G + G V G ++ G++ LQVAE V ++ RFL+ K GEPTK +
Sbjct: 114 AGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVTYRFLN-KEGEPTKQR 172
Query: 311 TRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVE 370
TR I R++ T+ G V + + D+ + +G+ EDV + +P + +V+LI+N+ E
Sbjct: 173 TRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDVQVALEPGQNPRRVNLILNIKE 232
Query: 371 R 371
R
Sbjct: 233 R 233
>pdb|2NV4|A Chain A, Crystal Structure Of Upf0066 Protein Af0241 In Complex
With S-Adenosylmethionine. Northeast Structural Genomics
Consortium Target Gr27
pdb|2NV4|B Chain B, Crystal Structure Of Upf0066 Protein Af0241 In Complex
With S-Adenosylmethionine. Northeast Structural Genomics
Consortium Target Gr27
Length = 147
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 236 DAFRDGYGKVVNIRRL-----------DEVITSINGWYMERGLFGMVSGVEILSGGIIRL 284
D + DG K+ N+R + D++ G ERG+F S G+ +
Sbjct: 36 DEYADGLHKIENLRHIIVLYWXDKASRDKLRVVPPGETEERGVFTTRSPSRPNPIGLCVV 95
Query: 285 QVAEAEVNNISIRFLDRKTGEPT 307
++ E E N + +R+LD G P
Sbjct: 96 EILEVERNRLKVRWLDALDGSPV 118
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 160 EALTALKACRANSALTV----REVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPN 215
EAL +K+ R AL RE E + R+ YF ++G +P+
Sbjct: 91 EALEFVKSKRIKLALATSTPQREALERLRRLDLEKYF-DVXVFGDQVKNG-------KPD 142
Query: 216 QEFHGLVCEGANVLPTKFVEDAFRDG-----YGKVVNIRRLDEVITSING--WYMERGLF 268
E + LV E NV+P K V F D K I R+ V+ S+N +E G
Sbjct: 143 PEIYLLVLERLNVVPEKVV--VFEDSKSGVEAAKSAGIERIYGVVHSLNDGKALLEAGAV 200
Query: 269 GMVSGVEILS 278
+V EIL+
Sbjct: 201 ALVKPEEILN 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,385,449
Number of Sequences: 62578
Number of extensions: 611342
Number of successful extensions: 1341
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1331
Number of HSP's gapped (non-prelim): 8
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)