BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007922
(585 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana
GN=OEP80 PE=1 SV=1
Length = 732
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/614 (71%), Positives = 495/614 (80%), Gaps = 35/614 (5%)
Query: 1 MPLRNDDVRFISSPLKIPPFRPEPPVPF----------FAQTLTKSKNSLSHLIYSLNE- 49
M NDDVRF SS ++I P+ F L+ ++NSL+ ++ SL
Sbjct: 1 MHCHNDDVRFSSSSIRIHSPSPKEQHSLLTNLQSCSKTFVSHLSNTRNSLNQMLQSLKNR 60
Query: 50 ------STRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTG---------AVDTL--VNF 92
S R T+ L S + + GKS I + + T V+T+ ++
Sbjct: 61 HTPPPRSVRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQFNWSESRDENVETIRGLSS 120
Query: 93 PLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQP--HSVSRSDEERVLISEVLVRNKDGE 150
PLLC ASLSL + P +S S + + QQ HSVSR+ EERVLISEVLVR KDGE
Sbjct: 121 PLLCCASLSLTR-----PNESTQSVEGKDTVQQQKGHSVSRNAEERVLISEVLVRTKDGE 175
Query: 151 ELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVF 210
ELERKDLE EAL ALKACRANSALT+REVQEDVHRII+SGYFCSC PVAVDTRDGIRL+F
Sbjct: 176 ELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCSCTPVAVDTRDGIRLMF 235
Query: 211 QVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGM 270
QVEPNQEF GLVCE ANVLP+KF+ +AFRDG+GKV+NI+RL+E ITSINGWYMERGLFG+
Sbjct: 236 QVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEAITSINGWYMERGLFGI 295
Query: 271 VSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSM 330
VS ++ LSGGI+RLQVAEAEVNNISIRFLDRKTGEPTKGKT PETILRQLTTKKGQVYSM
Sbjct: 296 VSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPETILRQLTTKKGQVYSM 355
Query: 331 LQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGP 390
LQGKRDV+TVL MGIMEDVSIIPQPAGD+GKVDLIMN VERPSGGFSAGGGISSGITSGP
Sbjct: 356 LQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSGGFSAGGGISSGITSGP 415
Query: 391 LSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNS 450
LSGLIGSFAYSHRN+FGRNQKLN+SLERGQIDSIFRINYTDPWIEGDDKRTSR+IMVQNS
Sbjct: 416 LSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWIEGDDKRTSRSIMVQNS 475
Query: 451 RTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKD 510
RTPG VHGNQPDNSSLTIGRVTAG+E+SRP RPKW+GT GLIFQH+GARDE+GNPIIKD
Sbjct: 476 RTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARDEQGNPIIKD 535
Query: 511 FYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARA 570
FYSSPLTASGK +DE ++AK ES+YTGSGDQGS+MF FNMEQGLPV PEWL FNRV RA
Sbjct: 536 FYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEWLCFNRVTGRA 595
Query: 571 RKGVEIGPARLLLS 584
RKG+ IGPAR L S
Sbjct: 596 RKGIHIGPARFLFS 609
>sp|Q6H7M7|OEP80_ORYSJ Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp.
japonica GN=OEP80 PE=3 SV=2
Length = 665
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/452 (78%), Positives = 406/452 (89%), Gaps = 1/452 (0%)
Query: 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFC 193
EERVLISEV VR KDGE LER +LE A AL+ACR N+ALTVREVQEDVHR+++SG F
Sbjct: 91 EERVLISEVAVRGKDGEPLERPELEAAAAAALRACRPNAALTVREVQEDVHRVVESGLFR 150
Query: 194 SCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDE 253
SCMPVAVDTRDGIRLVF+VEPNQ+FHGLVCEGAN+LP+KF+EDAF D +GK++NIR LD+
Sbjct: 151 SCMPVAVDTRDGIRLVFEVEPNQDFHGLVCEGANMLPSKFLEDAFHDRHGKIINIRHLDQ 210
Query: 254 VITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRP 313
VI S+NGWY ERGL G+VS EILSGGI+RLQV+EAEVNNI+IRFLDR+TGEPT GKT+P
Sbjct: 211 VIKSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRTGEPTVGKTQP 270
Query: 314 ETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPS 373
ETILR LTTKKGQ Y+ Q KRDVET+LTMGIMEDV+IIPQP GD+ KVDL+MN+VERPS
Sbjct: 271 ETILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNKVDLVMNLVERPS 330
Query: 374 GGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPW 433
GGFSAGGGISSGIT+GPLSGLIGSFAYSHRNVFGRN+KLN+SLERGQIDSIFR+NYTDPW
Sbjct: 331 GGFSAGGGISSGITNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDPW 390
Query: 434 IEGDDKRTSRTIMVQNSRTPGTHVH-GNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGL 492
I+GD+KRTSRTIMVQNSRTPGT +H G+ PD+ +TIGRVTAG+E+SRP RPKWSGT+GL
Sbjct: 391 IDGDNKRTSRTIMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGL 450
Query: 493 IFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQ 552
IFQH+GARD+KGNPII+DFY+S LTASG D+ L+AK ESVYT SGD+ S+MFVFN+EQ
Sbjct: 451 IFQHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQ 510
Query: 553 GLPVWPEWLFFNRVNARARKGVEIGPARLLLS 584
GLP+ PEWL FNRV AR R+G EIGPARLLLS
Sbjct: 511 GLPILPEWLSFNRVTARLRQGYEIGPARLLLS 542
>sp|A2X208|OEP80_ORYSI Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp.
indica GN=OEP80 PE=3 SV=1
Length = 665
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/452 (78%), Positives = 406/452 (89%), Gaps = 1/452 (0%)
Query: 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFC 193
EERVLISEV VR KDGE LER +LE A AL+ACR N+ALTVREVQEDVHR+++SG F
Sbjct: 91 EERVLISEVAVRGKDGEPLERPELEAAAAAALRACRPNAALTVREVQEDVHRVVESGLFR 150
Query: 194 SCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDE 253
SCMPVAVDTRDGIRLVF+VEPNQ+FHGLVCEGAN+LP+KF+EDAF D +GK++NIR LD+
Sbjct: 151 SCMPVAVDTRDGIRLVFEVEPNQDFHGLVCEGANMLPSKFLEDAFHDRHGKIINIRHLDQ 210
Query: 254 VITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRP 313
VI S+NGWY ERGL G+VS EILSGGI+RLQV+EAEVNNI+IRFLDR+TGEPT GKT+P
Sbjct: 211 VIKSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRTGEPTVGKTQP 270
Query: 314 ETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPS 373
ETILR LTTKKGQ Y+ Q KRDVET+LTMGIMEDV+IIPQP GD+ KVDL+MN+VERPS
Sbjct: 271 ETILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNKVDLVMNLVERPS 330
Query: 374 GGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPW 433
GGFSAGGGISSGIT+GPLSGLIGSFAYSHRNVFGRN+KLN+SLERGQIDSIFR+NYTDPW
Sbjct: 331 GGFSAGGGISSGITNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDPW 390
Query: 434 IEGDDKRTSRTIMVQNSRTPGTHVH-GNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGL 492
I+GD+KRTSRTIMVQNSRTPGT +H G+ PD+ +TIGRVTAG+E+SRP RPKWSGT+GL
Sbjct: 391 IDGDNKRTSRTIMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGL 450
Query: 493 IFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQ 552
IFQH+GARD+KGNPII+DFY+S LTASG D+ L+AK ESVYT SGD+ S+MFVFN+EQ
Sbjct: 451 IFQHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQ 510
Query: 553 GLPVWPEWLFFNRVNARARKGVEIGPARLLLS 584
GLP+ PEWL FNRV AR R+G EIGPARLLLS
Sbjct: 511 GLPILPEWLSFNRVTARLRQGYEIGPARLLLS 542
>sp|P0C891|OEP80_PEA Outer envelope protein 80, chloroplastic (Fragments) OS=Pisum
sativum GN=OEP80 PE=1 SV=1
Length = 158
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 100/274 (36%), Gaps = 156/274 (56%)
Query: 283 RLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342
+LQV+EAEVNNISIRFLDRK
Sbjct: 11 KLQVSEAEVNNISIRFLDRK---------------------------------------- 30
Query: 343 MGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSH 402
SI+PQPA VDLI+ GLIGSFAYSH
Sbjct: 31 -------SIVPQPAQTA--VDLIVR-------------------------GLIGSFAYSH 56
Query: 403 RNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQP 462
R LN+SLER TPGT VHGNQ
Sbjct: 57 R--------LNLSLER---------------------------------TPGTLVHGNQD 75
Query: 463 DNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKT 522
NS+LTIGR WSGT GLIFQ Y+SPLTASG T
Sbjct: 76 GNSNLTIGR--------------WSGTAGLIFQR---------------YNSPLTASGNT 106
Query: 523 NDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPV 556
+ E L+AK S+ EQGLPV
Sbjct: 107 HTETLLAK------------SATLELTDEQGLPV 128
>sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1
Length = 809
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 96/426 (22%), Positives = 175/426 (41%), Gaps = 49/426 (11%)
Query: 182 DVHRIIDSGYFCSCMPVAVD--TRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFR 239
D R I+ G PV +D + ++ F +E+ + L V + +
Sbjct: 243 DRFRCINVGLMGQSKPVEMDPDMSEKEKIEFFRRQEREYKRRISSARPCLLPTSVHEEIK 302
Query: 240 DGYGKV--VNIRRLDEVITSINGWYMERGL-------FGMVSGVEILSGGIIRLQVAEAE 290
D + V+ R L ++ + WY E G FG ++ E++ +V E +
Sbjct: 303 DMLAEQGRVSARLLQKIRDRVQSWYHEEGYACAQVVNFGNLNTREVV------CEVVEGD 356
Query: 291 VNNISIRFLDRKTGEPTKGKTRPETILRQLTTK--KGQVYSMLQGKRDVETVLTMGIMED 348
+ +SI++LD K G +G T + R+L + G +++ GK+ + + ++ + +
Sbjct: 357 ITKLSIQYLD-KLGNVVEGNTEGPVVQRELPKQLLPGHTFNIEAGKQALRNINSLALFSN 415
Query: 349 VSIIPQP-AGDTGK--VDLIMNVVERPSGGFSAGGGISSGITSGPLSGLI---GSFAYSH 402
+ + P+P + G V++ + +E+ S S I G P + G+ + H
Sbjct: 416 IEVNPRPDEMNEGSIIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLASLQPGGTITFEH 475
Query: 403 RNVFGRNQKLNISLERG-----QIDSIFRINYTDPWIEGDDKRTSRTIMVQ--NSRTPGT 455
RN+ G N+ L S+ Q D F++ Y P+++G D +RT+ V NSR
Sbjct: 476 RNLQGLNRSLTGSVTTSNFLNPQDDLAFKMEYAHPYLDGVDNPRNRTLRVSCFNSRKLSP 535
Query: 456 HVHGNQ--PDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDE------KGNPI 507
G + S+ + R + + T GL+ + RDE G +
Sbjct: 536 VFTGGPGVDEVPSIWVDRAGVKANITENFSRQSKFTYGLVMEEIITRDESNHICSNGQRV 595
Query: 508 IKDFYSS----PLTASGKTNDEMLIAKF----ESVYTGSGDQGSSMFVFNMEQGLPVWPE 559
+ + S P T SG D M + ++ +G S +F ++QGL V
Sbjct: 596 LPNGAISADGPPTTLSGTGIDRMAFLQANITRDNTRFVNGTIVGSRNMFQVDQGLGVGSN 655
Query: 560 WLFFNR 565
+ FFNR
Sbjct: 656 FPFFNR 661
>sp|Q84Q83|TOC75_ORYSJ Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica
GN=TOC75 PE=2 SV=2
Length = 817
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 149/362 (41%), Gaps = 52/362 (14%)
Query: 246 VNIRRLDEVITSINGWYMERGL-------FGMVSGVEILSGGIIRLQVAEAEVNNISIRF 298
V+ R L + + WY G FG ++ E++ +V E ++ + +F
Sbjct: 318 VSARLLQRIRDHVQKWYHNEGFVCAQVVNFGNLNTSEVVC------EVVEGDITKVEYQF 371
Query: 299 LDRKTGEPTKGKTRPETILRQL--TTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA 356
D K G +G T+ I R+L + G ++++ GK+ ++ + ++ + ++ + P+P
Sbjct: 372 QD-KLGNFVEGNTQIPIIDRELPQQLRPGHIFNIGAGKQALKNINSLALFSNIEVNPRP- 429
Query: 357 GDTGK-----VDLIMNVVERPSGGFSAGGGISSGITSGPLSGLI---GSFAYSHRNVFGR 408
D K V++ + +E S S I G P I G+ ++ HRN++G
Sbjct: 430 -DETKEGGIVVEIKLKELEPKSAEVSTEWSIVPGREGRPTLASIQPGGTVSFEHRNIYGL 488
Query: 409 NQKL-----NISLERGQIDSIFRINYTDPWIEG-DDKRTSRTIMVQ--NSR--TPGTHVH 458
N+ + + +L Q D F++ Y P+++G DD+ +RT N+R +P
Sbjct: 489 NRSIVGSVTSSNLLNPQDDLSFKLEYVHPYLDGVDDRNKNRTFKTSCFNTRKLSPVFVAG 548
Query: 459 GNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIK--------- 509
N + + + RV + + T GL+ + RDE +
Sbjct: 549 PNMDEAPPVWVDRVGFKANITESFTRQSKFTYGLVVEEITTRDETNSICTHGSRAMPSGG 608
Query: 510 -DFYSSPLTASGKTNDEML-----IAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFF 563
P T SG D M I + + + G +F ++QGL + + FF
Sbjct: 609 LSMDGPPTTLSGTGIDRMAFLQANITRDNTEFVNGAVIGDRC-IFQLDQGLGIGSKNPFF 667
Query: 564 NR 565
NR
Sbjct: 668 NR 669
>sp|Q9STE8|TC753_ARATH Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3
PE=1 SV=1
Length = 818
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 147/363 (40%), Gaps = 55/363 (15%)
Query: 246 VNIRRLDEVITSINGWYMERGL-------FGMVSGVEILSGGIIRLQVAEAEVNNISIRF 298
V+ R L + + WY + G FG ++ E++ +V E ++ + I+F
Sbjct: 320 VSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTKEVVC------EVVEGDITQLVIQF 373
Query: 299 LDRKTGEPTKGKTRPETILRQL--TTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA 356
D K G +G T+ + R+L ++G V+++ GK+ + + ++G+ ++ + P+P
Sbjct: 374 QD-KLGNVVEGNTQVPVVRRELPKQLRQGYVFNIEAGKKALSNINSLGLFSNIEVNPRPD 432
Query: 357 GDTGK---VDLIMNVVERPSGGFSAGGGISSGITSGPLSGLI---GSFAYSHRNVFGRNQ 410
V++ + +E+ S S I G P GS + HRN+ G N+
Sbjct: 433 EKNEGGIIVEIKLKELEQKSAEVSTEWSIVPGRGGAPTLASFQPGGSVTFEHRNLQGLNR 492
Query: 411 KLNISLERG-----QIDSIFRINYTDPWIEGDDKRTSRTIMVQ--NSR------TPGTHV 457
L S+ Q D F++ Y P+++G +RT NSR T G V
Sbjct: 493 SLMGSVTTSNFLNPQDDLSFKLEYVHPYLDGVYNPRNRTFKTSCFNSRKLSPVFTGGPGV 552
Query: 458 HGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDE------KGNPIIKDF 511
P + + R + + T GL+ + RDE G ++
Sbjct: 553 EEVPP----IWVDRAGVKANITENFTRQSKFTYGLVMEEITTRDESSHIAANGQRLLPSG 608
Query: 512 YSS----PLTASGKTNDEML-----IAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLF 562
S P T SG D M I + + + G VF ++QGL + ++ F
Sbjct: 609 GISADGPPTTLSGTGVDRMAFLQANITRDNTKFVNGAVVGQRT-VFQVDQGLGIGSKFPF 667
Query: 563 FNR 565
FNR
Sbjct: 668 FNR 670
>sp|Q9K1H0|BAMA_NEIMB Outer membrane protein assembly factor BamA OS=Neisseria
meningitidis serogroup B (strain MC58) GN=bamA PE=1 SV=1
Length = 797
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 310 KTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQP-AGDTGKVDLIMNV 368
KTR E + R+L + Y + +R E V +G ++V P AG KVDL M++
Sbjct: 359 KTRDEVVRRELRQMESAPYDTSKLQRSKERVELLGYFDNVQFDAVPLAGTPDKVDLNMSL 418
Query: 369 VERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRIN 428
ER +G +S+G +GL+ S S N+FG + + R + ++
Sbjct: 419 TERSTGSLD----LSAGWVQD--TGLVMSAGVSQDNLFGTGKSAALRASRSKTTLNGSLS 472
Query: 429 YTDPWIEGD 437
+TDP+ D
Sbjct: 473 FTDPYFTAD 481
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 280 GIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVET 339
GI L +A+ + +I + L R T P T+ L K G Y+ G +++
Sbjct: 14 GISPLALADFTIQDIRVEGLQR---------TEPSTVFNYLPVKVGDTYNDTHGSAIIKS 64
Query: 340 VLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGG 375
+ G +DV + +T L++ V+ERP+ G
Sbjct: 65 LYATGFFDDVRV------ETADGQLLLTVIERPTIG 94
>sp|C6V5K2|BAMA_NEORI Outer membrane protein assembly factor BamA OS=Neorickettsia
risticii (strain Illinois) GN=bamA PE=3 SV=1
Length = 738
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 301 RKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTG 360
RK +T+ I R++ + +Y + +L +G ++V I + D
Sbjct: 335 RKINISGNTRTKDTVIRREMLLSENDLYQPSKVADSRRRILNLGFFDEV-YIEEHKIDGQ 393
Query: 361 KVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQ 420
+ L + V ERP+G + GG S + G G+F++ N+FG + +L + L++
Sbjct: 394 NLILEVRVKERPTGTLNLSGGYGSDV------GFFGNFSFVENNLFGTSDRLVVELQKAS 447
Query: 421 IDSIFRINY 429
+ S + + +
Sbjct: 448 LGSNYSMEF 456
>sp|P46278|CCNB2_MEDSV G2/mitotic-specific cyclin-2 OS=Medicago sativa subsp. varia PE=2
SV=1
Length = 434
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 150 EELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCM-PVAVDTR 203
EE+E +D+E E + + +C AN++L V E ED+H + C+ P +D +
Sbjct: 147 EEVEMEDIEGEMILDIDSCDANNSLAVVEYIEDLHAYYRKIEYLGCVSPTYMDEQ 201
>sp|P30278|CCNB2_MEDSA G2/mitotic-specific cyclin-2 (Fragment) OS=Medicago sativa PE=2
SV=1
Length = 328
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 150 EELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCM-PVAVDTR 203
EE+E +D+E E + + +C AN++L V E ED+H + C+ P +D +
Sbjct: 41 EEVEMEDIEGEMILDIDSCDANNSLAVVEYIEDLHAYYRKIEYLGCVSPTYMDEQ 95
>sp|Q729H8|BAMA_DESVH Outer membrane protein assembly factor BamA OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=bamA PE=3 SV=1
Length = 791
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%)
Query: 179 VQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAF 238
+ +++ RI D GYF DG LV+ V +V EG++ + + A
Sbjct: 94 INKEIKRIWDLGYFSDVQASVEQGGDGTVLVYTVTEKPRIDNIVIEGSDKVGHDDILAAM 153
Query: 239 RDGYGKVVNIRRLDEVITSINGWYMERGLF 268
G V+N + L + + + Y + G +
Sbjct: 154 SSKTGSVLNDKLLAQDLQKVTELYRKEGFY 183
>sp|P34616|CADH3_CAEEL Cadherin-3 OS=Caenorhabditis elegans GN=cdh-3 PE=2 SV=1
Length = 3343
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 251 LDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGK 310
LD + + ++ ++ +FG +EI G+I L E N +IR D + P K
Sbjct: 1390 LDAIASDVSFSIVDGDVFG---NLEIEDSGVISLNSIPNESFNATIRIYDNR--PPFKVH 1444
Query: 311 TRPETILRQLTTKKGQV------YSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDL 364
TI Q+T K V + M G DV ++ I+ I+PQ D+ K+D
Sbjct: 1445 FDDVTIEFQVTQKLRAVTCEDAEFWMFFGNEDVGMLIASEIVT-WRIVPQIGSDSFKIDP 1503
Query: 365 IMNVVE 370
I +++
Sbjct: 1504 ITGIIQ 1509
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,419,017
Number of Sequences: 539616
Number of extensions: 9385237
Number of successful extensions: 26074
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 26037
Number of HSP's gapped (non-prelim): 42
length of query: 585
length of database: 191,569,459
effective HSP length: 123
effective length of query: 462
effective length of database: 125,196,691
effective search space: 57840871242
effective search space used: 57840871242
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)