Query 007922
Match_columns 585
No_of_seqs 344 out of 2616
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 17:08:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03138 Protein TOC75; Provis 100.0 3.5E-47 7.5E-52 422.5 48.3 441 131-576 142-659 (796)
2 COG4775 Outer membrane protein 100.0 5.1E-46 1.1E-50 420.7 46.1 428 130-580 165-634 (766)
3 TIGR00992 3a0901s03IAP75 chlor 100.0 1E-43 2.3E-48 404.1 46.5 415 138-577 109-582 (718)
4 PRK11067 outer membrane protei 100.0 1.1E-42 2.4E-47 405.4 52.5 421 129-573 167-639 (803)
5 TIGR03303 OM_YaeT outer membra 100.0 6.3E-40 1.4E-44 379.1 52.6 420 129-572 142-603 (741)
6 TIGR03303 OM_YaeT outer membra 99.9 1.4E-22 3.1E-27 234.5 50.6 230 128-373 60-321 (741)
7 PRK11067 outer membrane protei 99.9 1.8E-22 3.9E-27 235.8 49.0 233 128-373 83-346 (803)
8 COG4775 Outer membrane protein 99.9 1.2E-20 2.7E-25 214.5 41.0 234 128-377 83-347 (766)
9 COG0729 Outer membrane protein 99.9 7.4E-22 1.6E-26 218.5 27.1 318 188-532 81-421 (594)
10 COG2831 FhaC Hemolysin activat 99.9 1E-19 2.2E-24 201.6 32.9 335 218-574 75-439 (554)
11 PF03865 ShlB: Haemolysin secr 99.1 3.9E-08 8.5E-13 106.2 29.1 170 319-501 10-189 (404)
12 PF01103 Bac_surface_Ag: Surfa 99.0 1.9E-08 4.1E-13 104.3 19.9 160 404-572 1-183 (323)
13 KOG2602 Predicted cell surface 99.0 1.2E-09 2.6E-14 114.0 9.0 259 288-573 35-318 (457)
14 PLN03138 Protein TOC75; Provis 99.0 3E-07 6.6E-12 104.3 28.1 152 129-289 219-426 (796)
15 TIGR00992 3a0901s03IAP75 chlor 98.8 4.5E-05 9.8E-10 88.1 37.5 160 127-297 170-356 (718)
16 PF08479 POTRA_2: POTRA domain 98.7 6.2E-08 1.4E-12 79.3 9.0 72 218-289 3-76 (76)
17 PF07244 Surf_Ag_VNR: Surface 98.7 1.2E-07 2.6E-12 77.6 10.0 73 217-289 2-78 (78)
18 PF07244 Surf_Ag_VNR: Surface 98.7 7.3E-08 1.6E-12 78.9 8.5 72 137-215 1-78 (78)
19 COG2831 FhaC Hemolysin activat 98.6 8.4E-06 1.8E-10 91.2 22.8 158 132-300 68-231 (554)
20 COG0729 Outer membrane protein 97.3 0.002 4.2E-08 72.6 12.2 134 130-272 109-252 (594)
21 PF08479 POTRA_2: POTRA domain 96.9 0.0059 1.3E-07 49.8 8.0 71 137-215 1-76 (76)
22 PF10082 DUF2320: Uncharacteri 86.7 47 0.001 35.3 19.0 64 423-498 297-360 (381)
23 PF08478 POTRA_1: POTRA domain 84.2 1.3 2.8E-05 34.8 3.6 68 290-371 2-69 (69)
24 PRK05529 cell division protein 79.5 7.6 0.00017 39.3 8.0 76 289-378 61-137 (255)
25 PF08478 POTRA_1: POTRA domain 78.8 2.2 4.8E-05 33.5 3.2 67 138-214 2-68 (69)
26 PF04338 DUF481: Protein of un 69.4 1.1E+02 0.0023 29.2 22.6 89 471-561 85-178 (210)
27 PF04575 DUF560: Protein of un 65.7 1.6E+02 0.0034 29.9 19.5 73 465-537 186-262 (285)
28 PF11854 DUF3374: Protein of u 64.2 93 0.002 36.0 13.0 62 441-502 538-601 (637)
29 PRK05529 cell division protein 59.2 27 0.00059 35.3 6.9 73 134-219 58-133 (255)
30 PF03865 ShlB: Haemolysin secr 59.1 2.6E+02 0.0057 30.2 15.0 62 235-299 8-71 (404)
31 PF10437 Lip_prot_lig_C: Bacte 53.7 10 0.00022 31.4 2.2 62 278-349 14-77 (86)
32 PF04575 DUF560: Protein of un 48.1 3.1E+02 0.0067 27.7 19.5 95 392-500 41-146 (285)
33 PF10437 Lip_prot_lig_C: Bacte 45.0 56 0.0012 26.9 5.5 54 203-258 15-68 (86)
34 TIGR03016 pepcterm_hypo_1 unch 43.8 1.6E+02 0.0036 32.1 10.3 65 422-498 345-410 (431)
35 COG1589 FtsQ Cell division sep 42.1 51 0.0011 33.6 5.7 70 290-373 61-130 (269)
36 PF15603 Imm45: Immunity prote 39.3 55 0.0012 27.2 4.3 61 207-267 9-77 (82)
37 COG1589 FtsQ Cell division sep 39.1 63 0.0014 32.9 5.8 120 137-270 60-195 (269)
38 PF12094 DUF3570: Protein of u 38.5 5.6E+02 0.012 28.0 16.3 29 468-496 210-238 (420)
39 TIGR03014 EpsL exopolysacchari 35.9 5.7E+02 0.012 27.3 17.4 98 391-497 250-359 (381)
40 PRK10808 outer membrane protei 34.0 4.5E+02 0.0097 27.7 11.6 28 469-496 144-171 (351)
41 PF14905 OMP_b-brl_3: Outer me 33.7 4.4E+02 0.0096 28.5 12.0 35 466-501 200-234 (506)
42 TIGR03509 OMP_MtrB_PioB decahe 33.4 6E+02 0.013 29.4 13.3 58 441-498 550-609 (649)
43 PRK10716 long-chain fatty acid 32.9 6.2E+02 0.013 27.7 12.7 53 441-496 353-405 (435)
44 PF13505 OMP_b-brl: Outer memb 32.1 3.6E+02 0.0078 23.8 12.8 32 466-497 125-156 (176)
45 PRK14574 hmsH outer membrane p 30.5 2.3E+02 0.0051 33.8 9.4 23 473-495 661-683 (822)
46 PF03349 Toluene_X: Outer memb 28.7 7.4E+02 0.016 26.4 18.7 67 423-498 329-395 (427)
47 TIGR00545 lipoyltrans lipoyltr 27.7 2.2E+02 0.0048 29.9 7.8 87 245-341 217-311 (324)
48 PF11059 DUF2860: Protein of u 26.3 7.5E+02 0.016 25.7 14.8 65 421-498 167-231 (297)
49 PF11059 DUF2860: Protein of u 25.5 7.8E+02 0.017 25.6 11.3 64 468-534 165-228 (297)
50 PF10082 DUF2320: Uncharacteri 25.0 8.2E+02 0.018 25.7 19.0 32 469-500 294-325 (381)
51 PF06629 MipA: MltA-interactin 24.8 6.4E+02 0.014 24.4 16.6 75 423-497 115-200 (226)
52 PF01389 OmpA_membrane: OmpA-l 23.1 4.6E+02 0.01 24.9 8.5 70 424-495 80-151 (183)
53 PF03797 Autotransporter: Auto 22.5 7.2E+02 0.016 24.1 12.2 38 463-500 23-60 (265)
54 PF11557 DUF3233: Protein of u 22.2 9.3E+02 0.02 25.3 12.6 37 465-501 127-165 (328)
55 PRK10775 cell division protein 21.6 2.2E+02 0.0047 29.2 6.2 70 290-373 57-128 (276)
No 1
>PLN03138 Protein TOC75; Provisional
Probab=100.00 E-value=3.5e-47 Score=422.55 Aligned_cols=441 Identities=19% Similarity=0.296 Sum_probs=359.8
Q ss_pred cCccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHcCCCceEEEEEe--eCCCcEEE
Q 007922 131 RSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAV--DTRDGIRL 208 (585)
Q Consensus 131 i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~v~~~~--~~~~~v~v 208 (585)
..--++++|++|.|.|. ..-....+++.+.+.| .+++|..|++.++++|+++|++.|||+ .|.+.+ ..++.+.|
T Consensus 142 ~~~~~~~~vs~v~~~~~--~~~~~~~~e~~l~~~i-~~kpG~v~trsqLq~dv~~I~~tG~F~-~V~~~v~~~~dg~v~V 217 (796)
T PLN03138 142 LSGFKRYKVSEIEFFDR--RRNTTVGTEDSFFEMV-TLRPGGVYTKAQLQKELETLASCGMFE-KVDLEGKTKPDGTLGL 217 (796)
T ss_pred cCCcceEEEEEEEEecc--ccCCCcchHHHHHHHH-hcCCCCccCHHHHHHHHHHHHhcCCce-EEEEEEEeCCCCeEEE
Confidence 34457899999999882 1111222333343455 589999999999999999999999999 776543 34567999
Q ss_pred EEEEeeCCc--eEEEE------------EEcCCCCChhHHHhhhccCC----------------------------C-ce
Q 007922 209 VFQVEPNQE--FHGLV------------CEGANVLPTKFVEDAFRDGY----------------------------G-KV 245 (585)
Q Consensus 209 ~~~V~eG~~--~~~I~------------i~G~~~~~~~~L~~~~~lk~----------------------------G-~~ 245 (585)
+|.|+||+. ++.|. |+||..+++.+|++.+..++ + ..
T Consensus 218 ~~~i~Eg~~~~I~~I~~i~~~~~~~~~~~~GN~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~gk 297 (796)
T PLN03138 218 TISFTESTWQSADSFRCINVGLMSQSKPIEMDEDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRDQGK 297 (796)
T ss_pred EEEEEeCCceeeeeeeecccccccccceeeCCcccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhccCCc
Confidence 999999996 44888 99998888888776665433 1 24
Q ss_pred ecHHHHHHHHHHHHHHHHHCCc-eEEEeeEEEeeCcEEEEEEEEeEEeeEEEEEccccCCCCCCCCCCHHHHHhhcC--c
Q 007922 246 VNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--T 322 (585)
Q Consensus 246 f~~~~l~~~~~~I~~~y~~~GY-~A~V~~~~~~~dg~V~l~V~eg~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~--l 322 (585)
|+.++|++++++|+++|.++|| +++|.+.....++.|+++|.|+.+..|+|++.++ .|+++..++++.+|+|+++ +
T Consensus 298 lN~e~Lq~die~I~~~Y~d~GYafa~V~~~~~id~g~Vtl~V~EG~i~~I~V~~~dr-ig~~i~GNTrD~VIRREL~~~l 376 (796)
T PLN03138 298 VSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTNEVVCEVVEGDITKVVIQFQDK-LGNVVEGNTQLPIIDRELPKQL 376 (796)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCceEEEecccccCCceEEEEEecccEEEEEEEeccc-ccccccCCccCeEEeeeccccc
Confidence 9999999999999999999999 8999988777778999999999999999986543 2333334579999999997 5
Q ss_pred CCCCccchHhHHHHHHHHHhCCCccccccccccC-CCCCeEEEEEEEEE--cCCceEEEEEeeeCCCCCC---CccccEE
Q 007922 323 KKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GDTGKVDLIMNVVE--RPSGGFSAGGGISSGITSG---PLSGLIG 396 (585)
Q Consensus 323 ~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~-~~~g~vdl~i~v~E--~~~~~l~~g~g~st~~~~~---~~~G~~~ 396 (585)
+||++||..++++++++|+++|||++|++.+.|. ..++.++|+|.|+| ++.+.++++.+|+.+.... ...|+.+
T Consensus 377 keGd~fN~~~l~~slqRL~~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~G 456 (796)
T PLN03138 377 RQGHIFNIEAGKQALRNINSLALFSNIEVNPRPDEKNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPGG 456 (796)
T ss_pred CCCcccCHHHHHHHHHHHHhCCCCceeEEEeccCCCCCCeEEEEEEEEEccCCceeEecccccccccCCCCcccccccee
Confidence 9999999999999999999999999999999885 46899999999999 4555666665554321000 2356789
Q ss_pred EEEEEecCCCCCCceEEEEEEE-----cceeeEEEEEEecccccC--CCCceEEEEEEEEeecCCcccCCCC--CCCCCe
Q 007922 397 SFAYSHRNVFGRNQKLNISLER-----GQIDSIFRINYTDPWIEG--DDKRTSRTIMVQNSRTPGTHVHGNQ--PDNSSL 467 (585)
Q Consensus 397 ~~~~~~rNlfG~G~~l~l~~~~-----g~~~~~~~~sy~~P~~~~--~~~~~sl~~s~~~~~~~~~~~~~~~--~~~~~y 467 (585)
.++|+|+||+|+|+++.++++. ++....+.++|++||+.+ ++.++++++++++++....+|.+.. +.....
T Consensus 457 tvs~~~~NL~G~g~~L~~~v~~s~~~~g~~d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~~~ 536 (796)
T PLN03138 457 TVSFEHRNIQGLNRSILGSVTSSNLLNPQDDLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPPI 536 (796)
T ss_pred EEEEeccccccccceEEEEEEeecccCCccceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCCcc
Confidence 9999999999999999999998 456789999999999987 5666899999999887654544322 223345
Q ss_pred eEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEeecCCCCcee----------eeccCCceeeeecCCCceeeeeEeeEEcC
Q 007922 468 TIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPII----------KDFYSSPLTASGKTNDEMLIAKFESVYTG 537 (585)
Q Consensus 468 ~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~d~~g~~~~----------~~~~~~~l~ls~d~~D~~l~Pt~~~~y~~ 537 (585)
...+.++++.+++|+++.+.+++++.|++...+|..+.... .+.++.++++|....|++++.+++.+++.
T Consensus 537 ~~~R~G~~~~~~rp~~~~~~~s~g~~~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd~ 616 (796)
T PLN03138 537 WVDRAGFKANITENFTRQSKFTYGLVVEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRDN 616 (796)
T ss_pred eEeecccceEeecccCCCCceEEEEEEEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEecc
Confidence 68999999999999998888899999999999998876542 23567899999999999999999999987
Q ss_pred CC----CcceeEEEEEEEEEeecCCCceEEEEEEEeEeeeeee
Q 007922 538 SG----DQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEI 576 (585)
Q Consensus 538 ~~----d~~~~~~~~~~~~~~~l~~~~~~f~R~~~~~~~~~~l 576 (585)
++ .+.+.++.++++|++|++.+|++|+|+++.|++|+++
T Consensus 617 ~~~~~~pt~G~~~~~~~EQ~lpvg~~~~~fNR~~~~~s~fipv 659 (796)
T PLN03138 617 TKFVNGAVVGDRHIFQVDQGLGIGSKFPFFNRHQLTVTKFIQL 659 (796)
T ss_pred CCCCCCCCccceEEEEeeeeccccCCCCceEEEEEEEEEEEee
Confidence 76 3689999999999999999999999999999999998
No 2
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.1e-46 Score=420.68 Aligned_cols=428 Identities=21% Similarity=0.292 Sum_probs=361.2
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHhhc----ccCCCCcccHHHHHHHHHHHH----HcCCCceEEEE-E-
Q 007922 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALK----ACRANSALTVREVQEDVHRII----DSGYFCSCMPV-A- 199 (585)
Q Consensus 130 ~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~----~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~-~- 199 (585)
.|+||++..|+.|.|.| |+++++.+|+..+...-. |....+.|++.+++.|++.|. ++||.++.|.. .
T Consensus 165 ~i~eG~~~~i~~I~~~G--n~~~s~~~l~~~~~~k~~~~~~~~~~~~~y~~~~l~~D~e~lr~~Y~n~Gy~d~~v~s~~~ 242 (766)
T COG4775 165 VINEGPSAKIKQINFEG--NTAFSDSDLESVVQTKESNIWGWLTRLDKYDPDKLEADLETLRSFYLNRGYADFRVSSTQV 242 (766)
T ss_pred EeCCCCccceeeeEEec--cccccchhhhhheeeccceeEEEEecccccChhhhhccHHHHHHHHHhCceEEEEEeeeee
Confidence 78999999999999999 999999999987631111 233456899999999999985 79999999842 2
Q ss_pred -e-eCCCcEEEEEEEeeCCceE--EEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEeeE
Q 007922 200 -V-DTRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV 274 (585)
Q Consensus 200 -~-~~~~~v~v~~~V~eG~~~~--~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~~~ 274 (585)
. ++++.+.|+|.|+|||+|+ +|.|+|+...+.++|++++.+++|++|+.++++++.++|.++|.+.|| +++|.+.
T Consensus 243 ~~~~~k~~~~vt~~V~EG~~y~~~~i~i~g~~~~~~~el~~~~~~~~g~~fn~~~i~~~~~~I~~~~~~~GY~~a~V~p~ 322 (766)
T COG4775 243 SLDPDKKGVTVTYTVKEGPQYKFGSVLIEGNLAGVSEELEKLLKVKPGKLFNRKKIEDDADKIKERYARYGYAFANVSPQ 322 (766)
T ss_pred cccCCCccEEEEEEEccCCceEEEEEEEEcCccCcHHHHHHhhccCCCceEcHHHHHHHHHHHHHHHHhcCceeeEeeee
Confidence 2 4567799999999999988 999999998889999999999999999999999999999999999999 9999776
Q ss_pred EEeeC--c--EEEEEEEE---eEEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCcc
Q 007922 275 EILSG--G--IIRLQVAE---AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIME 347 (585)
Q Consensus 275 ~~~~d--g--~V~l~V~e---g~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F~ 347 (585)
...++ + .|.+.|++ .+|.+|.|. || .+|++++|+|++.++||++||..+++++.++|.++|||+
T Consensus 323 ~~~n~~~~tv~v~~~V~~g~~~~V~~i~i~------gn---~rT~D~VIrRE~~~~eGd~fn~~~v~~~~~rL~~lgyF~ 393 (766)
T COG4775 323 PDANDENKTVDVVFRVDEGDRVYVRRIRIR------GN---TRTKDYVIRREMRLKEGDVFNRKLVQRGKRRLRRLGYFE 393 (766)
T ss_pred cccCCCCcEEEEEEEEEcCCceeeeeeeec------CC---CccccHHhhhhhhcCCcchhhHHHHHHHHHHHHhcCCce
Confidence 65544 3 37777775 589999999 99 999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCeEEEEEEEEEcCCceEEEEEeeeCCCCCCCccccEEEEEEEecCCCCCCceEEEEEEEcceeeEEEE
Q 007922 348 DVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRI 427 (585)
Q Consensus 348 ~V~i~~~~~~~~g~vdl~i~v~E~~~~~l~~g~g~st~~~~~~~~G~~~~~~~~~rNlfG~G~~l~l~~~~g~~~~~~~~ 427 (585)
+|+|...|.+.+..+||+|.|+|++++++.+|+||++. .|+.+.++|+.+|+||.|+.+++.+.+|+..+.+.+
T Consensus 394 ~V~i~~~~~~~~~~vdvvv~VkE~~Tgsi~~G~Gy~s~------~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~~~~~~l 467 (766)
T COG4775 394 SVNIDTAPGSGSDQVDVVVDVKERSTGSINFGLGYGSD------SGLSGFASLSERNFLGTGQSLSLNANLGDKQTSYSL 467 (766)
T ss_pred eeEEEeccCCCCCeEEEEEEEEecCceeEEecccccCC------CceEEEEEEEEeecCccccEEEEEEEeccceEEEEE
Confidence 99999998866679999999999999999999999997 899999999999999999999999999999999999
Q ss_pred EEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEeecCCCC--
Q 007922 428 NYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGN-- 505 (585)
Q Consensus 428 sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~d~~g~-- 505 (585)
+|+.||+..++ +++++.+++.+... + .......+|+..+.|+++++++|+++++++++++.+++..+......
T Consensus 468 ~ft~P~f~~~~--~slg~~~f~~~~~~--~-~~~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~ 542 (766)
T COG4775 468 SFTDPYFLDDR--VSLGFNLFSNRYDT--F-DADTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPP 542 (766)
T ss_pred EEecccccCCC--ceeEEEeEeeeecc--c-ccccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCcc
Confidence 99999988655 68999999887631 0 00111248999999999999999999999999999998776532210
Q ss_pred --c---------eeeeccCCceeeeecCCCceeeeeEee------EEcCCC-CcceeEEEEEEEEEeecCCCceEEEEEE
Q 007922 506 --P---------IIKDFYSSPLTASGKTNDEMLIAKFES------VYTGSG-DQGSSMFVFNMEQGLPVWPEWLFFNRVN 567 (585)
Q Consensus 506 --~---------~~~~~~~~~l~ls~d~~D~~l~Pt~~~------~y~~~~-d~~~~~~~~~~~~~~~l~~~~~~f~R~~ 567 (585)
. .........++++||++|+.++|+.|+ ++.+.| +..++++.++..+++|+.... +.+.+.
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~s~~~tyD~rD~~~~Pt~G~~~~~~~e~~~~Ggd~~~~K~~~~~~~Y~~l~~~~-~~l~~~ 621 (766)
T COG4775 543 DEYASLGVKLQGGKSDLSSLSLGWTYDTRDNALFPTKGSYLSLTQEVAGLGGDIKYYKLELDGSKYYPLTDYI-FTLSLR 621 (766)
T ss_pred ccccccccccccCcceeEEEEEeEEEcCCCCcCCCCCCeEEeeeeEEeccCCcceEEEEEEEEEEEEEccccc-EEEEEE
Confidence 0 012344667788899999999999433 344443 789999999999999998876 455566
Q ss_pred EeEeeeeeecCce
Q 007922 568 ARARKGVEIGPAR 580 (585)
Q Consensus 568 ~~~~~~~~l~~~~ 580 (585)
+.++....+|+..
T Consensus 622 ~~~g~~~~~g~~~ 634 (766)
T COG4775 622 GEVGYGKGYGTKL 634 (766)
T ss_pred EEEEEeeccCCcc
Confidence 6666666666654
No 3
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=100.00 E-value=1e-43 Score=404.13 Aligned_cols=415 Identities=22% Similarity=0.328 Sum_probs=329.4
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHcCCCceEEEEEeeCCCcEEEEEEEeeCCc
Q 007922 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQE 217 (585)
Q Consensus 138 ~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~v~~~~~~~~~v~v~~~V~eG~~ 217 (585)
+|++|.+.|. . ..|+..++++| .+++|..+++.++++|+++|++.|||..+-....+...+++|+|+|+|+|.
T Consensus 109 l~~e~~~~~~--~----~~~~~~~~~~~-~~~~G~~~t~~~~~~d~~~i~~tG~F~~V~~~~~~~~~Gv~v~~~V~enP~ 181 (718)
T TIGR00992 109 LQKELEVLAT--C----GMFEKVDYEGK-TTQDGRLGTTISFAESVWAIADRFRCINVGLMPQSKPLEMDVDMEVKEKPE 181 (718)
T ss_pred eeeeeeeecC--c----HHHHHHHhhcc-ccCCCCcccHHHHHHHHHHHHHcEEeeeeEEeeccCCCceEEEEEEecCCE
Confidence 8999999994 2 33777777777 499999999999999999999999998765555567788999999999999
Q ss_pred eEE-EEEEc--------CCCCChhHHHhhhccCCC-ceecHHHHHHHHHHHHHHHHHCCc-eEEEeeEEEeeCcEEEEEE
Q 007922 218 FHG-LVCEG--------ANVLPTKFVEDAFRDGYG-KVVNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQV 286 (585)
Q Consensus 218 ~~~-I~i~G--------~~~~~~~~L~~~~~lk~G-~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~~~~~~~dg~V~l~V 286 (585)
++. |+++| +.+++.+.+++++..+.| ++++...|.+++++|+++|+++|| +|+|.......++.|+|.|
T Consensus 182 ~~~~v~~~g~~~~~~~~~~~lp~~~l~e~~~~~~G~~~ln~~~L~~~~~~I~~~Y~~~GY~~A~V~~~~~~~~~~V~l~V 261 (718)
T TIGR00992 182 FTRRLEIRYKRRIAEARPCLLPQEVVDETFGMLYGQGIVSARLLQEIRDRVQEWYHNEGYACAQVVNFGNLNTDEVVCEV 261 (718)
T ss_pred EEEEEEEeecccccccccccCCHHHHHHHhccccCCeecCHHHHHHHHHHHHHHHHHCCceeEEEeccCcCCCCEEEEEE
Confidence 997 99964 456788999999999999 999999999999999999999999 8998766444445899999
Q ss_pred EEeEEeeEEEEEccccCCCCCCCCCCHHHHHhhcC--cCCCCccchHhHHHHHHHHHhCCCccccccccccCC-CCCeEE
Q 007922 287 AEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--TKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAG-DTGKVD 363 (585)
Q Consensus 287 ~eg~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~--l~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~~-~~g~vd 363 (585)
.|++|.+|.|...+.. ||++..++++.+|+|+++ +++|++|+..++++++++|+++|+|++|++.+.|.. +++.++
T Consensus 262 ~EG~i~~I~V~~i~~~-Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~~Le~~~~rL~~lg~F~~V~V~~~p~~~~~g~v~ 340 (718)
T TIGR00992 262 VEGDITNLQIQFFDKL-GNVVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTALQNINSLGLFSNIEVNPRPDEMNEGEII 340 (718)
T ss_pred eccceeEEEEEEeccc-CccccCccchHHHHHHHHhccCCCCcCCHHHHHHHHHHHHcCCCcccceeeccCCCCCCCeEE
Confidence 9999999998643221 663335789999999999 999999999999999999999999999999988874 789999
Q ss_pred EEEEEEEcCCc--------eEEEEEe---eeCCCCCCCccccEEEEEEEecCCCCCCceEEEEEEEc-----ceeeEEEE
Q 007922 364 LIMNVVERPSG--------GFSAGGG---ISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERG-----QIDSIFRI 427 (585)
Q Consensus 364 l~i~v~E~~~~--------~l~~g~g---~st~~~~~~~~G~~~~~~~~~rNlfG~G~~l~l~~~~g-----~~~~~~~~ 427 (585)
|.|.|+|++++ ++.+|+| |+++ .|+++.++|+++|+||.|++|.++++.+ +..+.+.+
T Consensus 341 V~V~V~E~~~~s~~~~~~~s~~~G~Gg~~~ss~------~G~~g~i~~~~rNl~G~g~~l~~~~~~s~~~~~~~~~~~~l 414 (718)
T TIGR00992 341 VEIKLKELEQKSAEVSTEWSIVPGRGGRPTLAS------SQPGGTITFEHRNLQGLNRSLGGSVTTSNFLNPQDDLLFKV 414 (718)
T ss_pred EEEEEEECCCCceeeeccccccccCCCcccccc------cceeEEeeEEeccCcccCcEEEEEEEeccccCCCcceEEEE
Confidence 99999999998 6666666 6665 8999999999999999999999999998 77899999
Q ss_pred EEecccccCC--CCceEEEEEEEEeecCCcccCCC--CCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEE------EEEEE
Q 007922 428 NYTDPWIEGD--DKRTSRTIMVQNSRTPGTHVHGN--QPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGL------IFQHS 497 (585)
Q Consensus 428 sy~~P~~~~~--~~~~sl~~s~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl------~~~~~ 497 (585)
+|++||+.++ +.+.++++++++++.....+... ......|+..++++++++++|++++|.++.++ .|+..
T Consensus 415 sy~~P~i~~~~~p~~~s~~~~~f~~~~~~~~~~~~~~~~~~~~y~~~r~G~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~ 494 (718)
T TIGR00992 415 EYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSIWVDRAGVKANITENFARQSKFTYGLVMEEIFTRDES 494 (718)
T ss_pred EEecCccCCCCCCccceEEEEEEEeccccccccCCcccccCCCceEEEEEEEEEEeeccCcccccccCeEEEEEeeeeee
Confidence 9999999876 55678999998776533221111 12235689999999999999998766555444 44443
Q ss_pred EeecCCCCce-------------------eeeccCCceeeeecCCCceeeeeEeeEEcCCCCcceeEEEEEEEEEeecCC
Q 007922 498 GARDEKGNPI-------------------IKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWP 558 (585)
Q Consensus 498 ~i~d~~g~~~-------------------~~~~~~~~l~ls~d~~D~~l~Pt~~~~y~~~~d~~~~~~~~~~~~~~~l~~ 558 (585)
...+..+... ..+...+.++++||++|++++|+ .++++.++++++++++.
T Consensus 495 ~~~~~~g~~~~~~~~~~~~g~~~t~s~~~~~~l~~l~~~~t~D~rDn~l~Pt-----------~G~~~~~~~e~~~~~g~ 563 (718)
T TIGR00992 495 RHINANGQRSLPSGPISADGPPTTLSGTGVDRMAFLQANITRDNTNFVNGPT-----------VGSRVRFQVDQGLGVGS 563 (718)
T ss_pred eeccccCccccccccccccCCcceecCCCccceEEEEEEEEEecCCCCCCCC-----------cccEEEEEEEeccCcCC
Confidence 3333322110 01223344556666666666665 56777777777777777
Q ss_pred CceEEEEEEEeEeeeeeec
Q 007922 559 EWLFFNRVNARARKGVEIG 577 (585)
Q Consensus 559 ~~~~f~R~~~~~~~~~~l~ 577 (585)
++..|+|+++.+++|+++.
T Consensus 564 ~~~~f~r~~~~~~~y~pl~ 582 (718)
T TIGR00992 564 GFPFFNRHQLTYTKFIQLN 582 (718)
T ss_pred CCceEEEEEEEEEEEEecc
Confidence 6666777777777777764
No 4
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=100.00 E-value=1.1e-42 Score=405.42 Aligned_cols=421 Identities=15% Similarity=0.213 Sum_probs=343.9
Q ss_pred cccCccccceEEEEEEEeCCCCccChhhHHHHHHHhhc----ccCCCCcccHHHHHHHHHHHH----HcCCCceEEEE--
Q 007922 129 VSRSDEERVLISEVLVRNKDGEELERKDLETEALTALK----ACRANSALTVREVQEDVHRII----DSGYFCSCMPV-- 198 (585)
Q Consensus 129 ~~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~----~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~-- 198 (585)
..|+||++++|++|.|+| |+.+++++|++.+..... .+..++.|++.++++|+++|. ++|||+++|..
T Consensus 167 ~~i~EG~~~~I~~I~f~G--N~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~Y~~~Gy~~a~V~~~~ 244 (803)
T PRK11067 167 LVFTEGVSAKIQQINIVG--NHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQ 244 (803)
T ss_pred EEEecCCeEEEEEEEEEC--CCCcCHHHHHHHhcCCCCcchhhhccCCccCHHHHhhhHHHHHHHHHHCCCceEEecCcE
Confidence 388999999999999999 999999999986621000 011358899999999999985 68999999842
Q ss_pred -Ee-eCCCcEEEEEEEeeCCceE--EEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEee
Q 007922 199 -AV-DTRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSG 273 (585)
Q Consensus 199 -~~-~~~~~v~v~~~V~eG~~~~--~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~~ 273 (585)
.+ .+.+.+.|+|.|+||++|+ +|.|.|+..++.++|++.+.+++|++|+...+++++++|.++|+++|| +|+|.+
T Consensus 245 ~~~~~~~~~v~i~~~I~eG~~~~i~~i~~~G~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~~~~~GY~~a~v~~ 324 (803)
T PRK11067 245 VSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQT 324 (803)
T ss_pred EEEcCCCceEEEEEEEeeCCcEEEEEEEEEecCCCCHHHHHHhhcCCCCceeCHHHHHHHHHHHHHHHHhCCCCcceeee
Confidence 22 2344699999999999977 999999988888899999999999999999999999999999999999 898864
Q ss_pred EEEe--eCcE--EEEEEEEe---EEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCc
Q 007922 274 VEIL--SGGI--IRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIM 346 (585)
Q Consensus 274 ~~~~--~dg~--V~l~V~eg---~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F 346 (585)
.... .++. |++.|+|| +|++|.|. |+ .++++++|++++.+++|++|+..++++++++|+++|+|
T Consensus 325 ~~~~~~~~~~v~i~~~v~eG~~y~ig~I~i~------Gn---~~~~~~~l~r~l~~~~G~~~~~~~l~~~~~~L~~~g~F 395 (803)
T PRK11067 325 QPEINDADKTVKLHVNVDAGNRFYVRKIRFE------GN---DTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFF 395 (803)
T ss_pred ccccCCCCCEEEEEEEEeeCCeEEEEEEEEE------CC---ccccchhhhhheeccccccCCHHHHHHHHHHHHhcCCc
Confidence 3222 2343 77888865 79999999 98 88999999999999999999999999999999999999
Q ss_pred cccccccccC-CCCCeEEEEEEEEEcCCceEEEEEeeeCCCCCCCccccEEEEEEEecCCCCCCceEEEEEEEcceeeEE
Q 007922 347 EDVSIIPQPA-GDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIF 425 (585)
Q Consensus 347 ~~V~i~~~~~-~~~g~vdl~i~v~E~~~~~l~~g~g~st~~~~~~~~G~~~~~~~~~rNlfG~G~~l~l~~~~g~~~~~~ 425 (585)
+.|++.+.+. ..++.++|++.|+|++++.+++|+||+++ .|+++.++|+++|+||.|++++++++.+...+.+
T Consensus 396 ~~V~~~~~~~~~~~~~v~l~v~v~e~~~~~~~~g~gy~s~------~g~~~~~~~~~~N~~G~G~~l~l~~~~s~~~~~~ 469 (803)
T PRK11067 396 ETVDVDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTE------SGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYA 469 (803)
T ss_pred ccCccccccCCCCCCeEEEEEEEEEccCCcEEEEeeecCc------CCEEEEEEEEecccCCcCcEEEEEEEeccceEEE
Confidence 9999988654 34579999999999999999999999987 8999999999999999999999999999888899
Q ss_pred EEEEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEeecCCCC
Q 007922 426 RINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGN 505 (585)
Q Consensus 426 ~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~d~~g~ 505 (585)
.++|..||+...+ ++++.++++..... ......+|+.++.++++.+++|+.+++++++++.|++.++.+....
T Consensus 470 ~l~~~~P~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~y~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~ 542 (803)
T PRK11067 470 ELSVTDPYFTVDG--VSLGGRIFYNDFEA-----DDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQ 542 (803)
T ss_pred EEEEeCCcCcCCC--ceEEEEEEEEeccc-----cccccccceeeEEEEEEEEEEEecCceEEEEEEEEEEEEeecCCcc
Confidence 9999999987665 46666666654321 1123557999999999999999999999999999998776542110
Q ss_pred c--------------------eeeeccCCceeeeecCCCceeeeeEeeE------EcCC-CCcceeEEEEEEEEEeecCC
Q 007922 506 P--------------------IIKDFYSSPLTASGKTNDEMLIAKFESV------YTGS-GDQGSSMFVFNMEQGLPVWP 558 (585)
Q Consensus 506 ~--------------------~~~~~~~~~l~ls~d~~D~~l~Pt~~~~------y~~~-~d~~~~~~~~~~~~~~~l~~ 558 (585)
. .......+++++++|++|+.++|+.|.. +... ++..+.++.++..+++|+++
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~~~~Pt~G~~~~~~~~~~~~gs~~~f~k~~~~~~~y~~l~~ 622 (803)
T PRK11067 543 VAMWRYLYSMGENPSSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDD 622 (803)
T ss_pred hhHHHHHHHcCCccccccccccceEEEEEEEEEEEecCcCCCCCCCCeeEEEEEEEEeecccceEEEEEEEEEEEEEecC
Confidence 0 0012345667888999999999984432 2222 36788999999999999985
Q ss_pred C--ceEEEEEEEeEeee
Q 007922 559 E--WLFFNRVNARARKG 573 (585)
Q Consensus 559 ~--~~~f~R~~~~~~~~ 573 (585)
. +.+.+|+++|+...
T Consensus 623 ~~~~~l~~r~~~G~~~~ 639 (803)
T PRK11067 623 DHKWVLLGRGRLGYGDG 639 (803)
T ss_pred CCcEEEEEEEEeeeeec
Confidence 3 66777777666443
No 5
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00 E-value=6.3e-40 Score=379.08 Aligned_cols=420 Identities=20% Similarity=0.313 Sum_probs=349.1
Q ss_pred cccCccccceEEEEEEEeCCCCccChhhHHHHHHHhh----cccCCCCcccHHHHHHHHHHHH----HcCCCceEEE---
Q 007922 129 VSRSDEERVLISEVLVRNKDGEELERKDLETEALTAL----KACRANSALTVREVQEDVHRII----DSGYFCSCMP--- 197 (585)
Q Consensus 129 ~~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~----~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~--- 197 (585)
..|+||+++.|.+|.|+| |+.+++++|++.+.... ..++.++.|+++.+++++++|. ++||+++.|.
T Consensus 142 ~~v~eg~~~~i~~i~~~G--n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~ 219 (741)
T TIGR03303 142 FNIKEGKKAKIKKINFVG--NKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQ 219 (741)
T ss_pred EEEecCCEEEEEEEEEEC--CCcCCHHHHHHHHhcCcchhHHhccCCCeECHHHHhhhHHHHHHHHHhCCcEEEEEcCCE
Confidence 389999999999999999 99999999998663111 1133468999999999999985 7999999985
Q ss_pred EEe-eCCCcEEEEEEEeeCCceE--EEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEee
Q 007922 198 VAV-DTRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSG 273 (585)
Q Consensus 198 ~~~-~~~~~v~v~~~V~eG~~~~--~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~~ 273 (585)
+.+ .+.+.+.|+|.|+||++|+ +|.|.|+..++++.|++.+.+++|++|+.+.+++++++|.++|+++|| +++|.+
T Consensus 220 ~~~~~~~~~~~i~~~v~eG~~~~i~~i~i~g~~~~~~~~l~~~~~~~~G~~~~~~~~~~~~~~l~~~y~~~Gy~~~~v~~ 299 (741)
T TIGR03303 220 VSITPDKKGVYITYNIKEGEQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNP 299 (741)
T ss_pred EEECCCCCEEEEEEEeccCCCEEEEeEEEEeccCCcHHHHHHhhcCCCCCeeCHHHHHHHHHHHHHHHHhcCCceeEEEe
Confidence 222 3456789999999999976 999999998899999999999999999999999999999999999999 899875
Q ss_pred EEEe-e-Cc--EEEEEEEEe---EEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCc
Q 007922 274 VEIL-S-GG--IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIM 346 (585)
Q Consensus 274 ~~~~-~-dg--~V~l~V~eg---~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F 346 (585)
.... . ++ .|++.|+|+ +|++|.|. |+ ..+++++|++++++++|++|+.+++++++++|+++|+|
T Consensus 300 ~~~~~~~~~~v~v~~~v~eg~~~~i~~i~i~------g~---~~t~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~~lg~f 370 (741)
T TIGR03303 300 RPQINDENKTVDLTFKVDPGKRVYVRRINIS------GN---TRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYF 370 (741)
T ss_pred cceECCCCCEEEEEEEEccCCeEEEEEEEEE------CC---CccccceeehhhccCcccccCHHHHHHHHHHHHhCCCC
Confidence 4433 2 23 378888875 69999999 98 89999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCeEEEEEEEEEcCCceEEEEEeeeCCCCCCCccccEEEEEEEecCCCCCCceEEEEEEEcceeeEEE
Q 007922 347 EDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFR 426 (585)
Q Consensus 347 ~~V~i~~~~~~~~g~vdl~i~v~E~~~~~l~~g~g~st~~~~~~~~G~~~~~~~~~rNlfG~G~~l~l~~~~g~~~~~~~ 426 (585)
+.|.+.+.+...++.++|++.|+|++++.+.+++||++. .|+++.++|+++|+||.|+++++.+..+...+.+.
T Consensus 371 ~~v~~~~~~~~~~~~~~v~i~v~e~~~~~~~~~~g~~~~------~~~~~~~~~~~~Nl~G~g~~l~~~~~~~~~~~~~~ 444 (741)
T TIGR03303 371 ETVNIETVPVGSPDQVDLNVKVKEQPTGSISFGVGYGSS------SGLSFNASISERNFLGTGNRLSLSANKSSLSTSYS 444 (741)
T ss_pred ceeeeeecCCCCCCEEEEEEEEEEccccEEEEeeeecCC------CceEEEEEEEEecccccccEEEEEEEeccceEEEE
Confidence 999998887767889999999999999999999999876 78999999999999999999999999998888999
Q ss_pred EEEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEeecCCCCc
Q 007922 427 INYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNP 506 (585)
Q Consensus 427 ~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~d~~g~~ 506 (585)
++|+.|++.+.+ +.+++++++.+.... ......|...+.++++.+++++.++|.+++++.|++.++.+..+..
T Consensus 445 ~~~~~P~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (741)
T TIGR03303 445 LSFTDPYFTDDG--VSLGFSIFYSETDRN-----YKNFSDYKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKNSSDSD 517 (741)
T ss_pred EEEECCCCcCCC--eEEEEEEEEEEcccc-----cccccCceeEEEEEEEEEEEEecCceEEEEEEEEEEEEEecCCCcc
Confidence 999999988766 467777776654321 1123568889999999999999999999999999988776422110
Q ss_pred -----------eeeeccCCceeeeecCCCceeeeeEee------EEcCCC-CcceeEEEEEEEEEeecCCC--ceEEEEE
Q 007922 507 -----------IIKDFYSSPLTASGKTNDEMLIAKFES------VYTGSG-DQGSSMFVFNMEQGLPVWPE--WLFFNRV 566 (585)
Q Consensus 507 -----------~~~~~~~~~l~ls~d~~D~~l~Pt~~~------~y~~~~-d~~~~~~~~~~~~~~~l~~~--~~~f~R~ 566 (585)
......+..+++++|++|+.++|+.|+ .+.+.+ +..+.++.+...+++++... +.+.+|+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~d~rD~~~~P~~G~~~~~~~~~~~~g~~~~f~k~~~~~~~y~~l~~~~~~~l~~~~ 597 (741)
T TIGR03303 518 SSASYFIKEQGGKFIDSSLSYGWSYDTLDSGYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRG 597 (741)
T ss_pred hhHHHHHHHhCCceEEEEEEEEEEEeCCcCCCCCCCCcEEEEEEEEeeecCCceEEEEEEEEEEEEEcCCCCcEEEEEEE
Confidence 012344667788899999999998433 333333 67789999999999999884 7777777
Q ss_pred EEeEee
Q 007922 567 NARARK 572 (585)
Q Consensus 567 ~~~~~~ 572 (585)
.+++..
T Consensus 598 ~~g~~~ 603 (741)
T TIGR03303 598 RLGYGN 603 (741)
T ss_pred EeeEEE
Confidence 776654
No 6
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=99.94 E-value=1.4e-22 Score=234.46 Aligned_cols=230 Identities=16% Similarity=0.288 Sum_probs=193.0
Q ss_pred ccccCccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHH----HHcCCCceEEEEEee--
Q 007922 128 SVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVD-- 201 (585)
Q Consensus 128 ~~~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~v~~~~~-- 201 (585)
.+.+.+.|++.|++|.|+| |+.+++++|++.+ ..+++|..|++..+++++++| .++|||++.|...+.
T Consensus 60 ~l~~~v~e~~~i~~i~~~G--~~~~~~~~l~~~~----~~~~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~ 133 (741)
T TIGR03303 60 VLVIKVKERPIINSIVFSG--NKEIKKDQLKKAL----VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPL 133 (741)
T ss_pred EEEEEEEecceEEEEEEEC--CccCCHHHHHHHH----hhccCCCcCCHHHHHHHHHHHHHHHHHcCcceeEEEEEEEEC
Confidence 3688889999999999999 9999999999854 137899999999999999999 479999999876542
Q ss_pred CCCcEEEEEEEeeCCceE--EEEEEcCCCCChhHHHhhhccCC---------CceecHHHHHHHHHHHHHHHHHCCc-eE
Q 007922 202 TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGY---------GKVVNIRRLDEVITSINGWYMERGL-FG 269 (585)
Q Consensus 202 ~~~~v~v~~~V~eG~~~~--~I~i~G~~~~~~~~L~~~~~lk~---------G~~f~~~~l~~~~~~I~~~y~~~GY-~A 269 (585)
..+.+.|+|.|+|||+++ +|.|+|+..++++.|++.+..++ |++|+.+.+++++++|.++|+++|| .|
T Consensus 134 ~~~~~~v~~~v~eg~~~~i~~i~~~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~Gy~~a 213 (741)
T TIGR03303 134 PRNRVDLEFNIKEGKKAKIKKINFVGNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDF 213 (741)
T ss_pred CCCeEEEEEEEecCCEEEEEEEEEECCCcCCHHHHHHHHhcCcchhHHhccCCCeECHHHHhhhHHHHHHHHHhCCcEEE
Confidence 345689999999999765 99999999999999998887766 5899999999999999999999999 79
Q ss_pred EEeeEEEe--eC-c--EEEEEEEE---eEEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHH
Q 007922 270 MVSGVEIL--SG-G--IIRLQVAE---AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL 341 (585)
Q Consensus 270 ~V~~~~~~--~d-g--~V~l~V~e---g~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~ 341 (585)
+|...... .+ + .|++.|+| ++|++|.|. |+ ..++++.|++.+++++|++|+.++++++.++|.
T Consensus 214 ~v~~~~~~~~~~~~~~~i~~~v~eG~~~~i~~i~i~------g~---~~~~~~~l~~~~~~~~G~~~~~~~~~~~~~~l~ 284 (741)
T TIGR03303 214 KVESTQVSITPDKKGVYITYNIKEGEQYKFGEVTIE------GD---LIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIK 284 (741)
T ss_pred EEcCCEEEECCCCCEEEEEEEeccCCCEEEEeEEEE------ec---cCCcHHHHHHhhcCCCCCeeCHHHHHHHHHHHH
Confidence 98854433 22 2 47888887 479999999 98 788899999999999999999999999998887
Q ss_pred h----CCCcccccccccc--CCCCCeEEEEEEEEEcCC
Q 007922 342 T----MGIMEDVSIIPQP--AGDTGKVDLIMNVVERPS 373 (585)
Q Consensus 342 ~----lg~F~~V~i~~~~--~~~~g~vdl~i~v~E~~~ 373 (585)
+ .||. .+.+.+.+ ..+.+.++|++.|.|++.
T Consensus 285 ~~y~~~Gy~-~~~v~~~~~~~~~~~~v~v~~~v~eg~~ 321 (741)
T TIGR03303 285 DLLGEKGYA-FANVNPRPQINDENKTVDLTFKVDPGKR 321 (741)
T ss_pred HHHHhcCCc-eeEEEecceECCCCCEEEEEEEEccCCe
Confidence 6 5763 45554433 234568999999999985
No 7
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=99.94 E-value=1.8e-22 Score=235.83 Aligned_cols=233 Identities=13% Similarity=0.201 Sum_probs=193.7
Q ss_pred ccccCccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHH----HHcCCCceEEEEEe--e
Q 007922 128 SVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAV--D 201 (585)
Q Consensus 128 ~~~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~v~~~~--~ 201 (585)
.+.+++.|+|.|++|.|+| |+.+++++|++.+.. + .+++|+.|++..+++++++| .++|||++.|...+ .
T Consensus 83 ~l~~~v~e~p~I~~I~~~G--n~~~~~~~l~~~l~~-~-~~~~g~~~~~~~~~~~~~~l~~~Y~~~Gy~~~~V~~~~~~~ 158 (803)
T PRK11067 83 TLLVQVKERPTIASITFSG--NKSVKDDMLKQNLEA-S-GVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPL 158 (803)
T ss_pred EEEEEEecCcEEEEEEEEC--cccCCHHHHHHHHHh-c-cccccccCCHHHHHHHHHHHHHHHHhcCccccEEEEEEEEC
Confidence 5789999999999999999 999999999986632 2 46899999999999999999 46999999987654 2
Q ss_pred CCCcEEEEEEEeeCCceE--EEEEEcCCCCChhHHHhhhccCCC---------ceecHHHHHHHHHHHHHHHHHCCc-eE
Q 007922 202 TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGL-FG 269 (585)
Q Consensus 202 ~~~~v~v~~~V~eG~~~~--~I~i~G~~~~~~~~L~~~~~lk~G---------~~f~~~~l~~~~~~I~~~y~~~GY-~A 269 (585)
.++++.|+|.|+||++++ +|.|+||..++++.|++.+.+++| +.|+..++++++++|.++|+++|| .|
T Consensus 159 ~~~~v~l~~~i~EG~~~~I~~I~f~GN~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~Y~~~Gy~~a 238 (803)
T PRK11067 159 PRNRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARF 238 (803)
T ss_pred CCCeEEEEEEEecCCeEEEEEEEEECCCCcCHHHHHHHhcCCCCcchhhhccCCccCHHHHhhhHHHHHHHHHHCCCceE
Confidence 346789999999998755 999999999999999999988876 679999999999999999999999 69
Q ss_pred EEeeEEEe--eCc---EEEEEEEE---eEEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHH
Q 007922 270 MVSGVEIL--SGG---IIRLQVAE---AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL 341 (585)
Q Consensus 270 ~V~~~~~~--~dg---~V~l~V~e---g~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~ 341 (585)
+|.+.... .+. .|++.|+| ++|++|.|. |+ ....++.|++.+.+++|++|+..++++....|.
T Consensus 239 ~V~~~~~~~~~~~~~v~i~~~I~eG~~~~i~~i~~~------G~---~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~ 309 (803)
T PRK11067 239 NIDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVS------GN---LAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIK 309 (803)
T ss_pred EecCcEEEEcCCCceEEEEEEEeeCCcEEEEEEEEE------ec---CCCCHHHHHHhhcCCCCceeCHHHHHHHHHHHH
Confidence 98875532 232 47888887 489999999 98 677788899999999999999988887776554
Q ss_pred ----hCCCc-cccccccccCCCCCeEEEEEEEEEcCC
Q 007922 342 ----TMGIM-EDVSIIPQPAGDTGKVDLIMNVVERPS 373 (585)
Q Consensus 342 ----~lg~F-~~V~i~~~~~~~~g~vdl~i~v~E~~~ 373 (585)
+.||+ ..|...+....+.+.++|++.|.|++.
T Consensus 310 ~~~~~~GY~~a~v~~~~~~~~~~~~v~i~~~v~eG~~ 346 (803)
T PRK11067 310 KLLGRYGYAYPRVQTQPEINDADKTVKLHVNVDAGNR 346 (803)
T ss_pred HHHHhCCCCcceeeeccccCCCCCEEEEEEEEeeCCe
Confidence 46985 334323333345688999999999985
No 8
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=1.2e-20 Score=214.45 Aligned_cols=234 Identities=18% Similarity=0.300 Sum_probs=196.3
Q ss_pred ccccCccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHH----HcCCCceEEEEEe--e
Q 007922 128 SVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV--D 201 (585)
Q Consensus 128 ~~~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~~~--~ 201 (585)
.+.+.+.|++.|++|.|+| |+.+++++|++.+ .+++|+.|+...++++.++|. ..|||++.|...+ .
T Consensus 83 ~Lvv~V~e~p~I~~v~~~G--n~~i~~~~L~~~l-----~~~~g~~~~~~~l~~~~~~l~e~Y~~~G~~~~~v~~~~~~~ 155 (766)
T COG4775 83 TLVVTVKERPVINSVVFSG--NKSIKDDALKKNL-----KIKPGEVLNRAKLEADVEALKEAYLSRGYYSVKVTYKVTPL 155 (766)
T ss_pred EEEEEEecCCcEEEEEEeC--CccCChHHHHHhh-----ccCCCCcccHHHHHHHHHHHHHHHHhcCeecceeEEEEEEC
Confidence 3789999999999999999 9999999999855 467999999999999999995 5999999996544 2
Q ss_pred CCCcEEEEEEEeeCCc--eEEEEEEcCCCCChhHHHhhhccCC---------CceecHHHHHHHHHHHHHHHHHCCc-eE
Q 007922 202 TRDGIRLVFQVEPNQE--FHGLVCEGANVLPTKFVEDAFRDGY---------GKVVNIRRLDEVITSINGWYMERGL-FG 269 (585)
Q Consensus 202 ~~~~v~v~~~V~eG~~--~~~I~i~G~~~~~~~~L~~~~~lk~---------G~~f~~~~l~~~~~~I~~~y~~~GY-~A 269 (585)
..+++.|.|.|+||+. ++.|.|.|+..+++.+|++.+.+++ ++.|+..+++.+++.|..+|.++|| -+
T Consensus 156 ~~~~v~v~f~i~eG~~~~i~~I~~~Gn~~~s~~~l~~~~~~k~~~~~~~~~~~~~y~~~~l~~D~e~lr~~Y~n~Gy~d~ 235 (766)
T COG4775 156 PRNRVDVVFVINEGPSAKIKQINFEGNTAFSDSDLESVVQTKESNIWGWLTRLDKYDPDKLEADLETLRSFYLNRGYADF 235 (766)
T ss_pred CCCeEEEEEEeCCCCccceeeeEEeccccccchhhhhheeeccceeEEEEecccccChhhhhccHHHHHHHHHhCceEEE
Confidence 3678999999999987 5599999999999998988765544 4469999999999999999999999 68
Q ss_pred EEeeEEEee--C--c-EEEEEEEE---eEEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHH
Q 007922 270 MVSGVEILS--G--G-IIRLQVAE---AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL 341 (585)
Q Consensus 270 ~V~~~~~~~--d--g-~V~l~V~e---g~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~ 341 (585)
+|...+... + + .|++.|.| +++++|.|+ |+ .....+.|.+.+.+++|++|+.+++++...+|.
T Consensus 236 ~v~s~~~~~~~~k~~~~vt~~V~EG~~y~~~~i~i~------g~---~~~~~~el~~~~~~~~g~~fn~~~i~~~~~~I~ 306 (766)
T COG4775 236 RVSSTQVSLDPDKKGVTVTYTVKEGPQYKFGSVLIE------GN---LAGVSEELEKLLKVKPGKLFNRKKIEDDADKIK 306 (766)
T ss_pred EEeeeeecccCCCccEEEEEEEccCCceEEEEEEEE------cC---ccCcHHHHHHhhccCCCceEcHHHHHHHHHHHH
Confidence 988776543 2 2 58889986 589999999 88 666689999999999999999999999888875
Q ss_pred h----CCC-ccccccccccCCCCCeEEEEEEEEEcCCceEE
Q 007922 342 T----MGI-MEDVSIIPQPAGDTGKVDLIMNVVERPSGGFS 377 (585)
Q Consensus 342 ~----lg~-F~~V~i~~~~~~~~g~vdl~i~v~E~~~~~l~ 377 (585)
+ .|| |..|.+.+.+..+...++|.+.|.++++..++
T Consensus 307 ~~~~~~GY~~a~V~p~~~~n~~~~tv~v~~~V~~g~~~~V~ 347 (766)
T COG4775 307 ERYARYGYAFANVSPQPDANDENKTVDVVFRVDEGDRVYVR 347 (766)
T ss_pred HHHHhcCceeeEeeeecccCCCCcEEEEEEEEEcCCceeee
Confidence 4 587 55565555555556789999999999876443
No 9
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=7.4e-22 Score=218.47 Aligned_cols=318 Identities=16% Similarity=0.188 Sum_probs=233.3
Q ss_pred HcCCCceEEEEEee---CCCcEEEEEEEeeCCceE----EEEEEcCCCCChhHHHhh---hccCCCceecHHHHHHHHHH
Q 007922 188 DSGYFCSCMPVAVD---TRDGIRLVFQVEPNQEFH----GLVCEGANVLPTKFVEDA---FRDGYGKVVNIRRLDEVITS 257 (585)
Q Consensus 188 ~~GYf~a~v~~~~~---~~~~v~v~~~V~eG~~~~----~I~i~G~~~~~~~~L~~~---~~lk~G~~f~~~~l~~~~~~ 257 (585)
..||+.+.+.+... ......+..+|++|++.+ .+.+.|... .+..++.. ...+.|.++++..++.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~pg~~~~i~~~~~v~~G~a~-~d~~~~~~~~~~~~~~G~~~~~~~~~n~k~~ 159 (594)
T COG0729 81 ALGYLQPKGRFGGKVSVTEKRGKLIAKVTPGEPTPIAVVIVVLPGPAF-TDGDYRLLGDAAGPKEGEDLNQGTYENAKSS 159 (594)
T ss_pred hhceecceeeecccccccccccceeeecCCCCCcccceeeeecccccc-cChhhhhhhhhhccccCCccccchhhhhHHH
Confidence 48888887754331 223456788999999844 445668443 44333322 35779999999999999999
Q ss_pred HHHHHHHCCc-eEEEeeEEEeeC---cE--EEEEEE---EeEEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCcc
Q 007922 258 INGWYMERGL-FGMVSGVEILSG---GI--IRLQVA---EAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVY 328 (585)
Q Consensus 258 I~~~y~~~GY-~A~V~~~~~~~d---g~--V~l~V~---eg~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~y 328 (585)
|.+...++|| .+++...+...+ ++ +++.++ ++.+|.|.|+ |. .+++++.|++.+++++|++|
T Consensus 160 i~~~~~~~gy~~a~~~~~r~~v~~~~~~a~~~~~~dsG~~y~~g~v~~~------g~---~r~~~~~~~~~~~~~~G~~Y 230 (594)
T COG0729 160 IVRALLRKGYFLARFTKSRLVVDPATHTADVDLNYDSGRRYRFGPVTVE------GS---QRIDEEYLQNLVPFKYGLPY 230 (594)
T ss_pred HHHHHHHcCcchhcccccccccccccceEEEEEeecccceEEeCcEEEc------cc---eecCHHHHhhccccCCCCcC
Confidence 9999999999 688765555444 23 555555 4689999999 87 78999999999999999999
Q ss_pred chHhHHHHHHHHHhCCCccccccccccC--CCCCeEEEEEEEEEcCCceEEEEEeeeCCCCCCCccccEEEEEEEecCCC
Q 007922 329 SMLQGKRDVETVLTMGIMEDVSIIPQPA--GDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVF 406 (585)
Q Consensus 329 s~~~l~~~~~~L~~lg~F~~V~i~~~~~--~~~g~vdl~i~v~E~~~~~l~~g~g~st~~~~~~~~G~~~~~~~~~rNlf 406 (585)
+.+++.+..++|.++++|++|.|++... ..++.++|.|.+.|++...+.+|+||+++ .|.++.+.|.++|+|
T Consensus 231 ~~~~l~~~~~rl~~~~~F~sv~v~~~~~~~~~~~~~pv~v~~~~rk~~~~~lG~gyst~------~G~~~~~~w~~~~~~ 304 (594)
T COG0729 231 DPEDLAELNQRLRQTGYFSSVVVQPADKQAGPDGLLPVKVSVSERKENTFELGVGYSTD------VGAGLEAGWEKRNLF 304 (594)
T ss_pred CHHHHHHHHHHHhhcCceeeEEEecCccccCcCceeceEEEecccccceEEeeeEEecc------ccccceEEeeeeccc
Confidence 9999999999999999999999988654 34566899999999999999999999998 999999999999999
Q ss_pred CCCceEEEEEEEcceeeEEEEEEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCe
Q 007922 407 GRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKW 486 (585)
Q Consensus 407 G~G~~l~l~~~~g~~~~~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~ 486 (585)
++||++++...+++..+.+...|..|++... ......++.++...+.. ......|. ..+++...+....+|
T Consensus 305 ~~~~~l~~~~~is~~~~~~~~~y~~p~~~~~-~~~~~~~~~~~~~~~~~-----~t~~~~~~---~~l~~~~~~~~~~~~ 375 (594)
T COG0729 305 GRGHSLRIESEISAPLQTLEATYKAPLLFNP-LGQYNPVSAGFDRLDLY-----DTESDAYT---ESLSASRGWDASLGW 375 (594)
T ss_pred CcceeEeeeeeeccchhcCceEEEeecccCC-ccceeccccccccchhh-----cccccccc---ceeeeeehhccccCc
Confidence 9999999999999888889999999988754 23445555555433210 11122222 224444444445566
Q ss_pred EEEEEEEEEEEE--eecCCCCceeeeccCCceeeeecCCCceeeeeEe
Q 007922 487 SGTVGLIFQHSG--ARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFE 532 (585)
Q Consensus 487 ~~slgl~~~~~~--i~d~~g~~~~~~~~~~~l~ls~d~~D~~l~Pt~~ 532 (585)
...+++.|.... ..+..+.. .+-..+..+++.+++ ||.++|+-|
T Consensus 376 ~~~~~~r~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~-dd~~~Pt~G 421 (594)
T COG0729 376 QRSLALRFSYDNFRQGDISGKT-SLLTPGVEFSYTRDT-DDGLFPTWG 421 (594)
T ss_pred eeEEEEEEEccccccccccCCc-eEEecceEEEEEEcc-CCCCCCCcc
Confidence 666555555433 33333322 233345666666777 999999943
No 10
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=99.87 E-value=1e-19 Score=201.58 Aligned_cols=335 Identities=17% Similarity=0.199 Sum_probs=240.2
Q ss_pred eEEEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEe-eEEEeeCcEEEEEEEEeEEeeEE
Q 007922 218 FHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVS-GVEILSGGIIRLQVAEAEVNNIS 295 (585)
Q Consensus 218 ~~~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~-~~~~~~dg~V~l~V~eg~Ig~I~ 295 (585)
|+.|.++|+..++..+|++.+....|+++....|..++.+|+++|.++|| .++|. +.+.+.+|+|.|+|.||+|++|+
T Consensus 75 I~~i~l~g~~~~~~~~l~~~~~~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q~i~~G~l~l~VveG~i~~i~ 154 (554)
T COG2831 75 INRIELEGNTLLDALELQAILAPYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQDLKSGTLRLQVVEGRIEDIR 154 (554)
T ss_pred EEEEEEeCCcccChHHHHHhhHHhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCCcccCCeEEEEEeceEeeeEE
Confidence 34899999999999999999999999999999999999999999999999 78866 55788899999999999999999
Q ss_pred EEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCccccccccccCCCCCeEEEEEEEEEcCCce
Q 007922 296 IRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGG 375 (585)
Q Consensus 296 I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~vdl~i~v~E~~~~~ 375 (585)
|. |+ ....+..++..++.++|++++..+||+.++.|+++.-.+ |.+++.|+..+|..+|.|.++++++.+
T Consensus 155 i~------g~---~~~~~~~~~~~~p~~~g~~Ln~~~lEq~l~~l~~~P~~q-a~~~l~pg~~~G~S~l~i~~~~~~~~~ 224 (554)
T COG2831 155 IT------GD---SDLRSVALRSLFPAHRGDPLNLRDLEQGLELLNRLPGVQ-ADAELVPGSEPGESDLVIKVQQGKPWR 224 (554)
T ss_pred Ec------CC---CccchhhHHhhccccCCCCCCHHHHHHHHHHhhhCcccc-ceeEEccCCCCCccEEEEEeeeCCCeE
Confidence 99 87 566668888999999999999999999999999997754 888888888899999999999977766
Q ss_pred EEEEE-eeeCCCCCCCccc-cEEEEEEEecCCCCCCceEEEEEEEccee---eEEEEEEecccccCCCCceEEEEEEEEe
Q 007922 376 FSAGG-GISSGITSGPLSG-LIGSFAYSHRNVFGRNQKLNISLERGQID---SIFRINYTDPWIEGDDKRTSRTIMVQNS 450 (585)
Q Consensus 376 l~~g~-g~st~~~~~~~~G-~~~~~~~~~rNlfG~G~~l~l~~~~g~~~---~~~~~sy~~P~~~~~~~~~sl~~s~~~~ 450 (585)
+.+++ ++++. .+| +++.+++...|++|.|+++++++..+... ..++++|+.|+.. +.++++++....
T Consensus 225 ~~~~~DN~G~~-----~tG~~r~~~~l~~dn~lglgD~l~~~~~~~~~~~~~~~~~~~Ys~P~g~---~~~~~~~s~~~y 296 (554)
T COG2831 225 VSASADNYGSK-----STGRYRLGVGLSLDNPLGLGDQLSLSYSRSLDGQTTNNYSLSYSVPLGY---WTFSLGASYSEY 296 (554)
T ss_pred EEEEecCCCCc-----CccceeeEeEEEecCCCcchhheeehhcccCCCcccceEEEEEEEEEcc---ceeEEEeeeeee
Confidence 66654 33433 344 68999999999999999999999985433 4899999999853 223444444333
Q ss_pred ecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCC--CeEEEEEEEEEEEEeecCCCCc----eeeeccCCceeeeecC--
Q 007922 451 RTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRP--KWSGTVGLIFQHSGARDEKGNP----IIKDFYSSPLTASGKT-- 522 (585)
Q Consensus 451 ~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~--~~~~slgl~~~~~~i~d~~g~~----~~~~~~~~~l~ls~d~-- 522 (585)
+... .......++..+....++.++||+-+ ...+++++.+.+.+..+..... ..+......+.+++..
T Consensus 297 ~~~~----~~~~~~~~~~G~s~~~~~~l~~~l~R~~~~~~s~~~~~~~r~~~~~~~~~~~~~q~r~~~~~~~gl~~~~~~ 372 (554)
T COG2831 297 RQVL----EGPFDVLDYQGKSQNLSLRLSHPLLRNRSSKLSLGLGLSHRRSENYLDDTEIEVQRRRLTAVELGLSGRRYL 372 (554)
T ss_pred Eeec----ccCCceEEEecceEEEEEEeeeEEEecCcceEEEEEEEEEehhhhhhccccccccccccccEEecceEEEEe
Confidence 2211 11234566788888999999999944 4456666666664433221100 0111111111111110
Q ss_pred ----CCceeeeeEee-----EEc-----CCCCcceeEEEEEEEEEeecCC-CceEEEEEEEeEeeee
Q 007922 523 ----NDEMLIAKFES-----VYT-----GSGDQGSSMFVFNMEQGLPVWP-EWLFFNRVNARARKGV 574 (585)
Q Consensus 523 ----~D~~l~Pt~~~-----~y~-----~~~d~~~~~~~~~~~~~~~l~~-~~~~f~R~~~~~~~~~ 574 (585)
.|--+.-..+. ..+ +-.+..+.++.+++....|+.. .+.+..++.++++..-
T Consensus 373 ~~~~~~~~l~~~~G~~~lGa~~~~~~~~~~~~~~f~~~~~~~~~~~~f~~~~~~~~~~~~~Q~s~~~ 439 (554)
T COG2831 373 GGGTLDASLGYRRGLGALGASKDDEETNGEPTSRFKKLNGNASLLQPFGLGPFLYATQFNAQYSGDP 439 (554)
T ss_pred ccceecccchhhhCchhhcCCCCchhhcCCCCcceEEEEEeeEEEeecccccEEEEEEEEEEEcCCC
Confidence 11111111111 110 0013456777777777777777 7888888887776543
No 11
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate. HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.
Probab=99.14 E-value=3.9e-08 Score=106.20 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=106.6
Q ss_pred hcCcCCCCccchHhHHHHHHHHHhCCCccccccccccCCCCCeEEEEEEEEEcCCceEEEEE-eeeCCCCCCCccc-cEE
Q 007922 319 QLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGG-GISSGITSGPLSG-LIG 396 (585)
Q Consensus 319 ~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~vdl~i~v~E~~~~~l~~g~-g~st~~~~~~~~G-~~~ 396 (585)
.+|..+|++++..+||+.+++|++++-- .|++.+.|+..+|..+|.|.+++.++..+.+++ ++++. .+| .++
T Consensus 10 ~fP~~~G~~LnlrdlEQgle~lnrl~~~-~~~~~i~PG~~~G~S~i~i~~~~~~~~~~~~~~DN~Gs~-----~TG~~q~ 83 (404)
T PF03865_consen 10 AFPNRKGKPLNLRDLEQGLEQLNRLPSN-QAKIDILPGEEPGTSDIVIENQPSKPWSGSLSLDNSGSK-----STGRYQG 83 (404)
T ss_dssp -STT-TT-B--HHHHHHHHHHH-S-SSE-EEEEEEEE-SSTTEEEEEEEEEE-SS-EEEEEEEE-SSS------SS-EEE
T ss_pred cCCCCCCCCCCHHHHHHHHHHhccCCCC-cceEEEecCCCCCEEEEEEEecccCCEEEEEEEecCCcc-----ccceEEE
Confidence 4688999999999999999999998754 678888898889999999999887765555554 34443 344 689
Q ss_pred EEEEEecCCCCCCceEEEEEEEcc------eeeEEEEEEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEE
Q 007922 397 SFAYSHRNVFGRNQKLNISLERGQ------IDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIG 470 (585)
Q Consensus 397 ~~~~~~rNlfG~G~~l~l~~~~g~------~~~~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~ 470 (585)
.+++...|+||.++.|++++.... ....+.+.|..|+.. +.+++.+.+.+..... ........+..+
T Consensus 84 ~~~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~G~-----~~ls~~~s~s~y~~~~--~~~~~~~~~~G~ 156 (404)
T PF03865_consen 84 GATLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPYGY-----WTLSLFASYSDYRYHQ--GLSYSTYDLSGD 156 (404)
T ss_dssp EEEEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEETT-----EEEEEEEEEEEEE-----SSSS-----EEE
T ss_pred EEEEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeeeec-----eEEEEEEEEeEEEEee--ccccceEEeeee
Confidence 999999999999999999997642 235678999999742 3555555544432211 011123456677
Q ss_pred EEEEEEEEEEEcC--CCeEEEEEEEEEEEEeec
Q 007922 471 RVTAGMEFSRPIR--PKWSGTVGLIFQHSGARD 501 (585)
Q Consensus 471 ~~~~~~~l~~pl~--~~~~~slgl~~~~~~i~d 501 (585)
....++.++|++. .....++.+.+.+.+..+
T Consensus 157 s~~~~~~~~~~l~R~~~~k~~l~~~l~~k~~~n 189 (404)
T PF03865_consen 157 SRSLGLRLSYVLYRSQNSKTSLSAGLSHKKSKN 189 (404)
T ss_dssp EEEEEEEEEEEEE--SSEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEeeEEEEECCCceEEEEEEEEEEEccc
Confidence 7788888899984 344455555555554443
No 12
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=99.02 E-value=1.9e-08 Score=104.30 Aligned_cols=160 Identities=21% Similarity=0.298 Sum_probs=122.0
Q ss_pred CCCCCCceEEEEEEEcceeeEEEEEEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcC
Q 007922 404 NVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIR 483 (585)
Q Consensus 404 NlfG~G~~l~l~~~~g~~~~~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~ 483 (585)
|+||.|+++++++.++...+.+.++|..|++.+++ +.+.+++++..... .....|+.++.+++++++++++
T Consensus 1 N~~G~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 71 (323)
T PF01103_consen 1 NLFGTGQSLSVSATYGSDSQSLSLSYTNPYFFGDR--LSLGFSLYYSSSDS-------DEFSSYDEQTFGFSLSLGYRIS 71 (323)
T ss_pred CCCCCCeEEEEEEEEcCceEEEEEEEEEcCCCCCC--EEEEEEEEEEEccc-------cccccceeeeccccccceeEcc
Confidence 89999999999999988889999999999987665 56777777653211 2345788999999999999999
Q ss_pred CCeEEEEEEEEEEEEeecCCCCc------------eeeeccCCceeeeecCCCceeeeeEee------EEcC--CC-Ccc
Q 007922 484 PKWSGTVGLIFQHSGARDEKGNP------------IIKDFYSSPLTASGKTNDEMLIAKFES------VYTG--SG-DQG 542 (585)
Q Consensus 484 ~~~~~slgl~~~~~~i~d~~g~~------------~~~~~~~~~l~ls~d~~D~~l~Pt~~~------~y~~--~~-d~~ 542 (585)
+.+++++++.+.+..+....... .........+.+++|++|+.++|+.+. .+.. .+ +..
T Consensus 72 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~~~~~~~~ 151 (323)
T PF01103_consen 72 PNWSLSLGYSYSRNDFSTSSGSPFSDSVSSSDLQDGKSNISSLGLSLSYDTRDNSFFPTKGWYLSFSLEFSGKFLGSDSN 151 (323)
T ss_pred cceEEEEEEEEEEEEEEcCCCcccccccccccccCCceEEEEEEEEEEEecCCCccCCccceEEEEEEEEecccCCCcce
Confidence 99999999999988765443221 122345677888899999999998433 2322 22 566
Q ss_pred eeEEEEEEEEEeecCC--CceEEEEEEEeEee
Q 007922 543 SSMFVFNMEQGLPVWP--EWLFFNRVNARARK 572 (585)
Q Consensus 543 ~~~~~~~~~~~~~l~~--~~~~f~R~~~~~~~ 572 (585)
+.++.+.+..++++.+ ++.+..|+.+++..
T Consensus 152 f~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 183 (323)
T PF01103_consen 152 FYKFELSARYYYPLGNNHKFVLALRLQGGYIF 183 (323)
T ss_pred EEEEEEEEEEEEECccCCceEEEEeeeeeEee
Confidence 8999999999999985 56666777666644
No 13
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=98.99 E-value=1.2e-09 Score=114.03 Aligned_cols=259 Identities=16% Similarity=0.163 Sum_probs=166.3
Q ss_pred EeEEeeEEEEEccccCCCCCCCCCCHHHHHhhcCc--CCCCccc-hHhHHHHHHHHHhCCCcccccccccc----CCCCC
Q 007922 288 EAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTT--KKGQVYS-MLQGKRDVETVLTMGIMEDVSIIPQP----AGDTG 360 (585)
Q Consensus 288 eg~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l--~~G~~ys-~~~l~~~~~~L~~lg~F~~V~i~~~~----~~~~g 360 (585)
|.+|+.|.|. |+ .+|++++|.+++.. +.+...+ ......+..+|.++++|+.|++..+. ..-++
T Consensus 35 ~~~v~~V~v~------Gl---~~Tkdd~I~k~v~~~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p~ 105 (457)
T KOG2602|consen 35 ESRVDHVIVS------GL---ERTKDDFIMKEVDLVFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALPG 105 (457)
T ss_pred cceeeEEEec------cc---cccchHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCCC
Confidence 4589999999 98 99999999999852 3333211 23445677789999999999998764 23567
Q ss_pred eEEEEEEEEEcCCceEEEEEeeeCCCCCCCccccEEEEEEEecCCCCCCceEEEEEEEc-ceeeEEEEEEecccccCCCC
Q 007922 361 KVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERG-QIDSIFRINYTDPWIEGDDK 439 (585)
Q Consensus 361 ~vdl~i~v~E~~~~~l~~g~g~st~~~~~~~~G~~~~~~~~~rNlfG~G~~l~l~~~~g-~~~~~~~~sy~~P~~~~~~~ 439 (585)
..+|++.|.|.++ +.+..| |+... .--.+.+.+...|+||+|+.|..++.++ .....++++|..|.+.+..
T Consensus 106 ~~~Vt~~v~E~kr--~tg~~G--T~~gn---~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~~~~- 177 (457)
T KOG2602|consen 106 GLVVTFLVTEPKR--LTGSTG--TDVGN---REGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFHGLK- 177 (457)
T ss_pred ceeEEEEeeecch--heeecc--ccccC---CCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccCCCC-
Confidence 8899999999887 332222 33110 1224667888999999999999999998 5578899999999886543
Q ss_pred ceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEE--EEeecCC-CCcee-----ee-
Q 007922 440 RTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQH--SGARDEK-GNPII-----KD- 510 (585)
Q Consensus 440 ~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~--~~i~d~~-g~~~~-----~~- 510 (585)
..+.+..++...+ ......++....++.+++.++. +|.+...+.|+. ..+.+-+ +.... -+
T Consensus 178 -~~~~~~~~~~~~d-------~~~~ss~d~~~~g~sL~l~~~~--~~~l~H~l~~~~~WR~l~~~sq~as~svR~qaG~~ 247 (457)
T KOG2602|consen 178 -TPFSSFSIFRTQD-------WMKWSSLDETHRGASLELSAED--WFLLFHELKYEIAWRNLGDLSQGASFSVRRQAGHS 247 (457)
T ss_pred -cchhhhhhhhhhc-------ccccccccccccceEEEEecch--hhhhhHHHHHHHHHHhhccccccccHHHHHHhhHH
Confidence 2233333332221 1245667777777777776654 443232222221 1111110 00000 01
Q ss_pred -ccCCceeeeecCCCceeeeeEe------eEEcCCC-CcceeEEEEEEEEEeecCCCceEEEEEEEeEeee
Q 007922 511 -FYSSPLTASGKTNDEMLIAKFE------SVYTGSG-DQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKG 573 (585)
Q Consensus 511 -~~~~~l~ls~d~~D~~l~Pt~~------~~y~~~~-d~~~~~~~~~~~~~~~l~~~~~~f~R~~~~~~~~ 573 (585)
......++.+|++|..+.|+.+ .+|++.. +..+.+-.+.++...|+.....+-+++.+|+...
T Consensus 248 L~s~L~~tfv~D~Rd~~~~ptrG~~~k~~~e~~g~~~~~sf~k~e~~lq~avpl~~~~~~s~~~~~G~l~~ 318 (457)
T KOG2602|consen 248 LKSSLSYTFVFDKRDSSIIPTRGILLKSTSELAGLFGDVSFLKSELDLQKAVPLGFDATLSFSFSGGVLKP 318 (457)
T ss_pred HHHhhcceEEEeccCCcccccccceeEeehhhcCcccchhhhhhhhhheeccccccceeeEeeEeeeeeec
Confidence 1244556778999999999943 3456554 5667777888888888887766566666555443
No 14
>PLN03138 Protein TOC75; Provisional
Probab=98.97 E-value=3e-07 Score=104.30 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=109.3
Q ss_pred cccCccccceEEEEE------------EEeCCCCccChhhHHHHHHHhh------------------------cccCCCC
Q 007922 129 VSRSDEERVLISEVL------------VRNKDGEELERKDLETEALTAL------------------------KACRANS 172 (585)
Q Consensus 129 ~~i~~~~~~~I~~I~------------f~G~~N~~~~~~~L~~~i~~~~------------------------~~~~~g~ 172 (585)
.+|+|++...|++|. |+| |+.|++++|++.+.... .+++..+
T Consensus 219 ~~i~Eg~~~~I~~I~~i~~~~~~~~~~~~G--N~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~g 296 (796)
T PLN03138 219 ISFTESTWQSADSFRCINVGLMSQSKPIEM--DEDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRDQG 296 (796)
T ss_pred EEEEeCCceeeeeeeecccccccccceeeC--CcccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhccCC
Confidence 388999999999999 999 99999999998875321 1112334
Q ss_pred cccHHHHHHHHHHHH----HcCCCceEEEEEeeCCCcEEEEEEEeeCCceE-EEE--------EEcCCCCChhHHHhhhc
Q 007922 173 ALTVREVQEDVHRII----DSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFH-GLV--------CEGANVLPTKFVEDAFR 239 (585)
Q Consensus 173 ~~~~~~l~~d~~~L~----~~GYf~a~v~~~~~~~~~v~v~~~V~eG~~~~-~I~--------i~G~~~~~~~~L~~~~~ 239 (585)
.|+.+++++++++|. ++||..+.|..... .+.+.|+|.|.||.... .|+ ++|++ .+..|++-+.
T Consensus 297 klN~e~Lq~die~I~~~Y~d~GYafa~V~~~~~-id~g~Vtl~V~EG~i~~I~V~~~drig~~i~GNT--rD~VIRREL~ 373 (796)
T PLN03138 297 KVSARLLQRIRDRVQKWYHDEGYACAQVVNFGN-LNTNEVVCEVVEGDITKVVIQFQDKLGNVVEGNT--QLPIIDRELP 373 (796)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCceEEEecccc-cCCceEEEEEecccEEEEEEEecccccccccCCc--cCeEEeeecc
Confidence 699999999999984 79999888753221 22377899999999754 432 44555 3455666664
Q ss_pred --cCCCceecHHHHHHHHHHHHHHHHHCCceEEEe--eEEEe--eCc-EEEEEEEEe
Q 007922 240 --DGYGKVVNIRRLDEVITSINGWYMERGLFGMVS--GVEIL--SGG-IIRLQVAEA 289 (585)
Q Consensus 240 --lk~G~~f~~~~l~~~~~~I~~~y~~~GY~A~V~--~~~~~--~dg-~V~l~V~eg 289 (585)
+++|++|+...+++++++|. ..|||..|. +.... ++. +|.+.|.|.
T Consensus 374 ~~lkeGd~fN~~~l~~slqRL~----~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE~ 426 (796)
T PLN03138 374 KQLRQGHIFNIEAGKQALRNIN----SLALFSNIEVNPRPDEKNEGGIVVEIKLKEL 426 (796)
T ss_pred cccCCCcccCHHHHHHHHHHHH----hCCCCceeEEEeccCCCCCCeEEEEEEEEEc
Confidence 69999999999999888754 789975544 33322 223 467777773
No 15
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=98.77 E-value=4.5e-05 Score=88.14 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=109.5
Q ss_pred cccccCccccceEEE-EEEEeCC------CCccChhhHHHHHHHhhcccCCC-CcccHHHHHHHHHHHH----HcCCCce
Q 007922 127 HSVSRSDEERVLISE-VLVRNKD------GEELERKDLETEALTALKACRAN-SALTVREVQEDVHRII----DSGYFCS 194 (585)
Q Consensus 127 ~~~~i~~~~~~~I~~-I~f~G~~------N~~~~~~~L~~~i~~~~~~~~~g-~~~~~~~l~~d~~~L~----~~GYf~a 194 (585)
-++++++.|+|.|+. |+|+|.. |..++.+.|++.+ ..+.| ..++...+++++++|. ++||..+
T Consensus 170 v~v~~~V~enP~~~~~v~~~g~~~~~~~~~~~lp~~~l~e~~-----~~~~G~~~ln~~~L~~~~~~I~~~Y~~~GY~~A 244 (718)
T TIGR00992 170 MDVDMEVKEKPEFTRRLEIRYKRRIAEARPCLLPQEVVDETF-----GMLYGQGIVSARLLQEIRDRVQEWYHNEGYACA 244 (718)
T ss_pred eEEEEEEecCCEEEEEEEEeecccccccccccCCHHHHHHHh-----ccccCCeecCHHHHHHHHHHHHHHHHHCCceeE
Confidence 345888999999999 9998731 3346666676533 35678 9999999999998884 6999998
Q ss_pred EEEEEeeCCCcEEEEEEEeeCCceEEEE-----EEcCC---CCChhHHHhhhc--cCCCceecHHHHHHHHHHHHHHHHH
Q 007922 195 CMPVAVDTRDGIRLVFQVEPNQEFHGLV-----CEGAN---VLPTKFVEDAFR--DGYGKVVNIRRLDEVITSINGWYME 264 (585)
Q Consensus 195 ~v~~~~~~~~~v~v~~~V~eG~~~~~I~-----i~G~~---~~~~~~L~~~~~--lk~G~~f~~~~l~~~~~~I~~~y~~ 264 (585)
.|......... .|+|.|.||+. .+|. ..|+. ...+..+++.+. +++|++|+..++++++++|.+
T Consensus 245 ~V~~~~~~~~~-~V~l~V~EG~i-~~I~V~~i~~~Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~~Le~~~~rL~~---- 318 (718)
T TIGR00992 245 QVVNFGNLNTD-EVVCEVVEGDI-TNLQIQFFDKLGNVVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTALQNINS---- 318 (718)
T ss_pred EEeccCcCCCC-EEEEEEeccce-eEEEEEEecccCccccCccchHHHHHHHHhccCCCCcCCHHHHHHHHHHHHc----
Confidence 87533221222 79999999983 3333 34553 224456777888 899999999999998877664
Q ss_pred CCce--EEEeeEEEe-eCc--EEEEEEEEeEEeeEEEE
Q 007922 265 RGLF--GMVSGVEIL-SGG--IIRLQVAEAEVNNISIR 297 (585)
Q Consensus 265 ~GY~--A~V~~~~~~-~dg--~V~l~V~eg~Ig~I~I~ 297 (585)
-||| ++|.+.... ..+ .|.+.|.|..-+.+.+.
T Consensus 319 lg~F~~V~V~~~p~~~~~g~v~V~V~V~E~~~~s~~~~ 356 (718)
T TIGR00992 319 LGLFSNIEVNPRPDEMNEGEIIVEIKLKELEQKSAEVS 356 (718)
T ss_pred CCCcccceeeccCCCCCCCeEEEEEEEEECCCCceeee
Confidence 4554 566544332 334 36677777655544443
No 16
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=98.73 E-value=6.2e-08 Score=79.33 Aligned_cols=72 Identities=21% Similarity=0.457 Sum_probs=59.6
Q ss_pred eEEEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEe-eEEEeeCcEEEEEEEEe
Q 007922 218 FHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVS-GVEILSGGIIRLQVAEA 289 (585)
Q Consensus 218 ~~~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~-~~~~~~dg~V~l~V~eg 289 (585)
+++|.|+|++.++.++|.+.+....|++++...+.++.++|+++|+++|| ++++. +++.+.+|.|++.|.||
T Consensus 3 i~~i~~~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i~~G~l~i~V~eG 76 (76)
T PF08479_consen 3 IKGIRFEGNTLLPEEELQAILAPYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDISDGVLTIRVVEG 76 (76)
T ss_dssp --EEEEES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEETTSEEEEEEE--
T ss_pred eEEEEEECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeecCCCEEEEEEEcC
Confidence 56899999999999999999999999999999999999999999999999 78765 66778899999999875
No 17
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.71 E-value=1.2e-07 Score=77.60 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=62.8
Q ss_pred ceEEEEEEcC-CCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEeeEEEeeCc--EEEEEEEEe
Q 007922 217 EFHGLVCEGA-NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGG--IIRLQVAEA 289 (585)
Q Consensus 217 ~~~~I~i~G~-~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~~~~~~~dg--~V~l~V~eg 289 (585)
.+.+|.|.|+ ..++++.|++.+.+++|++|+...+.+++++|.++|.+.|| ++.|.+.....++ .|++.|+||
T Consensus 2 ~i~~I~i~Gn~~~~~~~~l~~~l~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~~~~v~l~~~V~Eg 78 (78)
T PF07244_consen 2 RIGEINIEGNLKKFSDEELRRELGLKPGDPFNPEKIEEDIERLQDYYKDKGYFFAKVSPEIDPDDNTVDLTFNVDEG 78 (78)
T ss_dssp EEEEEEEESE-SSSHHHHHHHCHSS-TTSBECHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEcCceEeCHHHHHhhcCCCCCCEeCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCEEEEEEEEEeC
Confidence 4679999998 88899999998999999999999999999999999999999 8999876665445 477777775
No 18
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.70 E-value=7.3e-08 Score=78.90 Aligned_cols=72 Identities=19% Similarity=0.460 Sum_probs=61.4
Q ss_pred ceEEEEEEEeCCC-CccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHH----HcCCCceEEEEEe-eCCCcEEEEE
Q 007922 137 VLISEVLVRNKDG-EELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV-DTRDGIRLVF 210 (585)
Q Consensus 137 ~~I~~I~f~G~~N-~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~~~-~~~~~v~v~~ 210 (585)
++|.+|.|.| | +.++++.|++.+ .+++|+.|++..+++++++|. +.|||.+.|.... .+++.+.|+|
T Consensus 1 ~~i~~I~i~G--n~~~~~~~~l~~~l-----~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~~~~v~l~~ 73 (78)
T PF07244_consen 1 YRIGEINIEG--NLKKFSDEELRREL-----GLKPGDPFNPEKIEEDIERLQDYYKDKGYFFAKVSPEIDPDDNTVDLTF 73 (78)
T ss_dssp CEEEEEEEES--E-SSSHHHHHHHCH-----SS-TTSBECHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEETTEEEEEE
T ss_pred CEEEEEEEEc--CceEeCHHHHHhhc-----CCCCCCEeCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCEEEEEE
Confidence 5799999999 8 899999999743 589999999999999999998 8999999886544 3447799999
Q ss_pred EEeeC
Q 007922 211 QVEPN 215 (585)
Q Consensus 211 ~V~eG 215 (585)
.|+||
T Consensus 74 ~V~Eg 78 (78)
T PF07244_consen 74 NVDEG 78 (78)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99998
No 19
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=98.56 E-value=8.4e-06 Score=91.16 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=116.5
Q ss_pred CccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHH----HHcCCCceEEEEEeeCCCcEE
Q 007922 132 SDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVDTRDGIR 207 (585)
Q Consensus 132 ~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~v~~~~~~~~~v~ 207 (585)
+|.+|+.|+.|+++| |..++..+|.+.+. --.|.++....+.....+| .++||..+.+-....+-..-.
T Consensus 68 ~E~~~f~I~~i~l~g--~~~~~~~~l~~~~~-----~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q~i~~G~ 140 (554)
T COG2831 68 DETPCFPINRIELEG--NTLLDALELQAILA-----PYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQDLKSGT 140 (554)
T ss_pred CCCceEEEEEEEEeC--CcccChHHHHHhhH-----HhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCCcccCCe
Confidence 334689999999999 89999999997442 2368888888888777666 379999988755433323346
Q ss_pred EEEEEeeCCceEEEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCceEEEeeEEEeeCc--EEEEE
Q 007922 208 LVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGG--IIRLQ 285 (585)
Q Consensus 208 v~~~V~eG~~~~~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY~A~V~~~~~~~dg--~V~l~ 285 (585)
|.|+|.||. +.+|++.|........+...+....|++++..+|++..+.+...-..+ =.+.+.+-+ ..| +|.+.
T Consensus 141 l~l~VveG~-i~~i~i~g~~~~~~~~~~~~~p~~~g~~Ln~~~lEq~l~~l~~~P~~q-a~~~l~pg~--~~G~S~l~i~ 216 (554)
T COG2831 141 LRLQVVEGR-IEDIRITGDSDLRSVALRSLFPAHRGDPLNLRDLEQGLELLNRLPGVQ-ADAELVPGS--EPGESDLVIK 216 (554)
T ss_pred EEEEEeceE-eeeEEEcCCCccchhhHHhhccccCCCCCCHHHHHHHHHHhhhCcccc-ceeEEccCC--CCCccEEEEE
Confidence 889999995 779999999876667788889999999999999999998887765543 112222222 223 68888
Q ss_pred EEEeEEeeEEEEEcc
Q 007922 286 VAEAEVNNISIRFLD 300 (585)
Q Consensus 286 V~eg~Ig~I~I~~~d 300 (585)
+.+.+--.+.+..++
T Consensus 217 ~~~~~~~~~~~~~DN 231 (554)
T COG2831 217 VQQGKPWRVSASADN 231 (554)
T ss_pred eeeCCCeEEEEEecC
Confidence 888766667776554
No 20
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.002 Score=72.63 Aligned_cols=134 Identities=14% Similarity=0.244 Sum_probs=100.0
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHH----HHcCCCceEEEE---Ee-e
Q 007922 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPV---AV-D 201 (585)
Q Consensus 130 ~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~v~~---~~-~ 201 (585)
+..+-.++.+..+.+.| ..+.+.+++......+ .++|..++...+.+....+ .++||+++.+.. .+ .
T Consensus 109 ~pg~~~~i~~~~~v~~G---~a~~d~~~~~~~~~~~--~~~G~~~~~~~~~n~k~~i~~~~~~~gy~~a~~~~~r~~v~~ 183 (594)
T COG0729 109 TPGEPTPIAVVIVVLPG---PAFTDGDYRLLGDAAG--PKEGEDLNQGTYENAKSSIVRALLRKGYFLARFTKSRLVVDP 183 (594)
T ss_pred CCCCCcccceeeeeccc---ccccChhhhhhhhhhc--cccCCccccchhhhhHHHHHHHHHHcCcchhccccccccccc
Confidence 44444566666677777 5666666665543222 4577777777776655554 479999998832 22 3
Q ss_pred CCCcEEEEEEEeeCCceE--EEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCceEEEe
Q 007922 202 TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVS 272 (585)
Q Consensus 202 ~~~~v~v~~~V~eG~~~~--~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY~A~V~ 272 (585)
..+.+.+.+.++.|++|. .|.++|...++++.++....++.|++|..+.+.+ +.+.+++.|||..+.
T Consensus 184 ~~~~a~~~~~~dsG~~y~~g~v~~~g~~r~~~~~~~~~~~~~~G~~Y~~~~l~~----~~~rl~~~~~F~sv~ 252 (594)
T COG0729 184 ATHTADVDLNYDSGRRYRFGPVTVEGSQRIDEEYLQNLVPFKYGLPYDPEDLAE----LNQRLRQTGYFSSVV 252 (594)
T ss_pred ccceEEEEEeecccceEEeCcEEEccceecCHHHHhhccccCCCCcCCHHHHHH----HHHHHhhcCceeeEE
Confidence 456789999999999987 9999999988999999999999999999888877 667788999965443
No 21
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=96.85 E-value=0.0059 Score=49.76 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=47.2
Q ss_pred ceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHH----HHcCCCceEEEEEee-CCCcEEEEEE
Q 007922 137 VLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVD-TRDGIRLVFQ 211 (585)
Q Consensus 137 ~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~v~~~~~-~~~~v~v~~~ 211 (585)
+.|++|.|+| |..++.++|.+.+ .-..|.+++...+++..++| .++||..+.+.+... -.++ .|++.
T Consensus 1 f~i~~i~~~G--~~~~~~~~l~~~~-----~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i~~G-~l~i~ 72 (76)
T PF08479_consen 1 FPIKGIRFEG--NTLLPEEELQAIL-----APYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDISDG-VLTIR 72 (76)
T ss_dssp ----EEEEES---TSSSCCHHHHHH-----GGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEETTS-EEEEE
T ss_pred CCeEEEEEEC--CCcCCHHHHHHHH-----HHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeecCCC-EEEEE
Confidence 3589999999 8999999999754 23468899999999888887 379999998865442 2333 58888
Q ss_pred EeeC
Q 007922 212 VEPN 215 (585)
Q Consensus 212 V~eG 215 (585)
|.||
T Consensus 73 V~eG 76 (76)
T PF08479_consen 73 VVEG 76 (76)
T ss_dssp EE--
T ss_pred EEcC
Confidence 8887
No 22
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=86.69 E-value=47 Score=35.29 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=38.6
Q ss_pred eEEEEEEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 007922 423 SIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSG 498 (585)
Q Consensus 423 ~~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~ 498 (585)
..+.+.+..-+- . ++++.+.+.+.+.++ ....-..+.+.+++++.|.+.++|.+++++.|+...
T Consensus 297 ~~~~~~~~h~~~--~--~l~~~~~~~~~~~~y--------~~~~r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~ 360 (381)
T PF10082_consen 297 TSVSLGWTHQLT--P--RLSLSLSAGYENRDY--------QGSDREDDTYSAGLGLTYRLNRWLSLSAGYRYEDRD 360 (381)
T ss_pred EEEEEEEEEEee--e--eEEEEEEEEEEEeEc--------CCCCceeeEEEEEEEEEEEecCCEEEEEEEEEEEee
Confidence 444555544432 2 255666666655432 112244556678888888888888888888887643
No 23
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=84.23 E-value=1.3 Score=34.82 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=51.8
Q ss_pred EEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCccccccccccCCCCCeEEEEEEEE
Q 007922 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV 369 (585)
Q Consensus 290 ~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~vdl~i~v~ 369 (585)
.|.+|.|. |+ .......|...+.+..|+.+=.-+..+..++|...++.+.|.+.-.. |++ |.|.|+
T Consensus 2 ~v~~I~V~------G~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~p~V~~v~V~r~~---P~~--l~I~V~ 67 (69)
T PF08478_consen 2 RVKKIEVS------GN---SYLSKEEILQALGIQKGKNLFSLDLKKIEQRLEKLPWVKSVSVSRRF---PNT--LEIKVK 67 (69)
T ss_dssp S--EEEEE------S----SSS-HHHHHHHHCTTSTTTCCCSHHHHHHHCCCCTTTEEEEEEEEET---TTE--EEEEEE
T ss_pred CccEEEEE------CC---CcCCHHHHHHHhCcCCCCeEEEECHHHHHHHHHcCCCEEEEEEEEeC---CCE--EEEEEE
Confidence 47889999 98 89999999999999999888777888888888889999988887653 454 566776
Q ss_pred Ec
Q 007922 370 ER 371 (585)
Q Consensus 370 E~ 371 (585)
|+
T Consensus 68 Er 69 (69)
T PF08478_consen 68 ER 69 (69)
T ss_dssp E-
T ss_pred eC
Confidence 63
No 24
>PRK05529 cell division protein FtsQ; Provisional
Probab=79.46 E-value=7.6 Score=39.34 Aligned_cols=76 Identities=17% Similarity=0.373 Sum_probs=60.9
Q ss_pred eEEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCccccccccccCCCCCeEEEEEEE
Q 007922 289 AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNV 368 (585)
Q Consensus 289 g~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~vdl~i~v 368 (585)
..|.+|.|. || ..+..+.|...+....|+.+-.-+++...++|.+..+.++|.++-.. ++. |.|.|
T Consensus 61 ~~v~~I~V~------Gn---~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~---P~t--l~I~V 126 (255)
T PRK05529 61 LALRSIEVA------GN---MRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKP---PGT--IVVRV 126 (255)
T ss_pred eEEEEEEEE------CC---ccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeC---CCE--EEEEE
Confidence 478999999 99 78999999999999999987777777788888999999999887653 343 68899
Q ss_pred EEcCC-ceEEE
Q 007922 369 VERPS-GGFSA 378 (585)
Q Consensus 369 ~E~~~-~~l~~ 378 (585)
+|+.. +.+.-
T Consensus 127 ~Er~pvA~~~~ 137 (255)
T PRK05529 127 VERVPLAFIQR 137 (255)
T ss_pred EEeeeEEEEEE
Confidence 99875 34443
No 25
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=78.79 E-value=2.2 Score=33.48 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=36.4
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHcCCCceEEEEEeeCCCcEEEEEEEee
Q 007922 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEP 214 (585)
Q Consensus 138 ~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~v~~~~~~~~~v~v~~~V~e 214 (585)
.|++|.|+| |+.++.+++.+.+ ....|..+-.-...+..++|.+..|.+.. .+...-++ .|.+.|.|
T Consensus 2 ~v~~I~V~G--~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~l~~~p~V~~v-~V~r~~P~--~l~I~V~E 68 (69)
T PF08478_consen 2 RVKKIEVSG--NSYLSKEEILQAL-----GIQKGKNLFSLDLKKIEQRLEKLPWVKSV-SVSRRFPN--TLEIKVKE 68 (69)
T ss_dssp S--EEEEES---SSS-HHHHHHHH-----CTTSTTTCCCSHHHHHHHCCCCTTTEEEE-EEEEETTT--EEEEEEEE
T ss_pred CccEEEEEC--CCcCCHHHHHHHh-----CcCCCCeEEEECHHHHHHHHHcCCCEEEE-EEEEeCCC--EEEEEEEe
Confidence 589999999 9999999999854 34455444433343344444455555332 22222233 46666666
No 26
>PF04338 DUF481: Protein of unknown function, DUF481; InterPro: IPR007433 This family includes several proteins of uncharacterised function.
Probab=69.36 E-value=1.1e+02 Score=29.24 Aligned_cols=89 Identities=13% Similarity=0.015 Sum_probs=43.7
Q ss_pred EEEEEEEEEEEcC----CCeEEEEEEEEEEEEeecCCCCceeeeccCCceeeeecCCCceeeeeEeeEE-cCCCCcceeE
Q 007922 471 RVTAGMEFSRPIR----PKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVY-TGSGDQGSSM 545 (585)
Q Consensus 471 ~~~~~~~l~~pl~----~~~~~slgl~~~~~~i~d~~g~~~~~~~~~~~l~ls~d~~D~~l~Pt~~~~y-~~~~d~~~~~ 545 (585)
+..++++++|.+- -.+.+.+|+.|++....+.... .........+.+.+.-.++.-+ .....| ....+...++
T Consensus 85 r~~~~~G~Gy~~~~~~~~~l~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~ 162 (210)
T PF04338_consen 85 RYTLGAGLGYRLINTDRHKLSVEAGPGYRYEDYTDGDDD-ENSPAARFGLDYRWKISDNLSL-TQTLSYQPSLSDFSDYR 162 (210)
T ss_pred EEEEEeEeeEEEEECCCEEEEEEECCcEEEEEecccCCc-eeEEEEEEEEEEEEEcCCCEEE-EEEEEEEEeecCCCCeE
Confidence 6678888888882 3446677777777665544111 1111222333333333333222 222222 2223344556
Q ss_pred EEEEEEEEeecCCCce
Q 007922 546 FVFNMEQGLPVWPEWL 561 (585)
Q Consensus 546 ~~~~~~~~~~l~~~~~ 561 (585)
+...+.--+++.+++.
T Consensus 163 ~~~~~~l~~~l~~~l~ 178 (210)
T PF04338_consen 163 VNSETGLKVKLTKNLS 178 (210)
T ss_pred EEEEEEEEEEEeccEE
Confidence 6666666666655543
No 27
>PF04575 DUF560: Protein of unknown function (DUF560); InterPro: IPR007655 This is a family of hypothetical bacterial proteins.
Probab=65.68 E-value=1.6e+02 Score=29.88 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=39.9
Q ss_pred CCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEeecCCCC---ceeeeccCCceeeeecCCC-ceeeeeEeeEEcC
Q 007922 465 SSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGN---PIIKDFYSSPLTASGKTND-EMLIAKFESVYTG 537 (585)
Q Consensus 465 ~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~d~~g~---~~~~~~~~~~l~ls~d~~D-~~l~Pt~~~~y~~ 537 (585)
..+...+.++.+++.+.+...+++.+.+++...+..+...- ..........+++...... --+.|++.+.|..
T Consensus 186 ~~~sy~~~g~r~g~~~~~~~g~~~~~~~~~~~r~y~~~~~~~~~~R~D~~~~~~~~l~~~~~~~~g~tP~l~~~y~~ 262 (285)
T PF04575_consen 186 KSYSYDRYGLRLGWSQEWPGGLSTRLSASYRRRDYDAPDPLFGKKRRDKEYSLSLSLWHRDWHFWGFTPRLTYSYTK 262 (285)
T ss_pred ccccceeeeEEEEEEEEecCCeEEEEEEEEEeeecCCCCcccCCCccCCEEEEEEEEEecccccccEEEEEEEEEEe
Confidence 34555666777777788877888888888877655443211 1111122333344332221 3456776666654
No 28
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=64.21 E-value=93 Score=35.96 Aligned_cols=62 Identities=8% Similarity=-0.022 Sum_probs=44.3
Q ss_pred eEEEEEEEEeecCCccc--CCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEeecC
Q 007922 441 TSRTIMVQNSRTPGTHV--HGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDE 502 (585)
Q Consensus 441 ~sl~~s~~~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~d~ 502 (585)
+.+++++.|........ .+......+|......+.+...|++++.+.+.+.+.||+....|-
T Consensus 538 L~lg~dYsys~~~s~~~~~~~~~~~~pd~~~~~h~l~~~~~y~ls~~~~lrl~y~yEr~~~~D~ 601 (637)
T PF11854_consen 538 LSLGLDYSYSDSDSDTDVTQGGSGPYPDYYSRQHNLNLYARYQLSKNMSLRLDYRYERYSDTDW 601 (637)
T ss_pred EEEeeeEEEecCccceEeecccccCCCCceeeEEEEEEEEEEEeCCCeEEEEEEEEEeeeccch
Confidence 56666666654433211 122335667888888999999999999999999999998876653
No 29
>PRK05529 cell division protein FtsQ; Provisional
Probab=59.17 E-value=27 Score=35.32 Aligned_cols=73 Identities=10% Similarity=0.123 Sum_probs=44.8
Q ss_pred cccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCc---ccHHHHHHHHHHHHHcCCCceEEEEEeeCCCcEEEEE
Q 007922 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSA---LTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVF 210 (585)
Q Consensus 134 ~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~---~~~~~l~~d~~~L~~~GYf~a~v~~~~~~~~~v~v~~ 210 (585)
.+-..|++|.++| |+.++.+++.+.+ ....|.. ++.+.++ ++|.+.-+.+. +.+...-.-+|.+
T Consensus 58 Sp~~~v~~I~V~G--n~~vs~~eI~~~~-----~~~~g~~l~~vd~~~~~---~~l~~~P~V~s---a~V~r~~P~tl~I 124 (255)
T PRK05529 58 SPLLALRSIEVAG--NMRVKPQDIVAAL-----RDQFGKPLPLVDPETVR---KKLAAFPLIRS---YSVESKPPGTIVV 124 (255)
T ss_pred CCceEEEEEEEEC--CccCCHHHHHHHh-----cccCCCcceeECHHHHH---HHHhcCCCEeE---EEEEEeCCCEEEE
Confidence 4678899999999 8999999999754 2334443 3444333 33434444432 2222122345788
Q ss_pred EEeeCCceE
Q 007922 211 QVEPNQEFH 219 (585)
Q Consensus 211 ~V~eG~~~~ 219 (585)
+|+|-+++-
T Consensus 125 ~V~Er~pvA 133 (255)
T PRK05529 125 RVVERVPLA 133 (255)
T ss_pred EEEEeeeEE
Confidence 889988754
No 30
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate. HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.
Probab=59.14 E-value=2.6e+02 Score=30.20 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=30.4
Q ss_pred HhhhccCCCceecHHHHHHHHHHHHHHHHHCCceEEEeeEEEeeCc--EEEEEEEEeEEeeEEEEEc
Q 007922 235 EDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGG--IIRLQVAEAEVNNISIRFL 299 (585)
Q Consensus 235 ~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY~A~V~~~~~~~dg--~V~l~V~eg~Ig~I~I~~~ 299 (585)
..+|+..+|++++..+|++..+.|.+. .|.-+++....-...| +|.|.+.+.+.-.+.+.++
T Consensus 8 ~~~fP~~~G~~LnlrdlEQgle~lnrl---~~~~~~~~i~PG~~~G~S~i~i~~~~~~~~~~~~~~D 71 (404)
T PF03865_consen 8 RTAFPNRKGKPLNLRDLEQGLEQLNRL---PSNQAKIDILPGEEPGTSDIVIENQPSKPWSGSLSLD 71 (404)
T ss_dssp ---STT-TT-B--HHHHHHHHHHH-S----SSEEEEEEEEE-SSTTEEEEEEEEEE-SS-EEEEEEE
T ss_pred cccCCCCCCCCCCHHHHHHHHHHhccC---CCCcceEEEecCCCCCEEEEEEEecccCCEEEEEEEe
Confidence 346788999999999999999887643 2333433322222234 4667766654334444443
No 31
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=53.66 E-value=10 Score=31.44 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=41.9
Q ss_pred eCcE--EEEEEEEeEEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCcccc
Q 007922 278 SGGI--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDV 349 (585)
Q Consensus 278 ~dg~--V~l~V~eg~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V 349 (585)
..|. |.++|..|.|.+|.|. |.. .....+...-..-.|.+|+.+.+.+.+..+.-..||..+
T Consensus 14 ~~G~v~v~~~V~~G~I~~i~i~------gDf----~~~~~i~~le~~L~G~~~~~~~i~~~l~~~~~~~~~~~~ 77 (86)
T PF10437_consen 14 PWGTVEVHLNVKNGIIKDIKIY------GDF----FGPEDIEELEEALIGCPYDREAIKEALNSVDLEDYFGNI 77 (86)
T ss_dssp TTEEEEEEEEEETTEEEEEEEE------ECB----S-CCCHHHHHHHHTTCBSSHHHHHHHHHHCHGGGTCCTH
T ss_pred CCceEEEEEEEECCEEEEEEEE------CCC----CCchHHHHHHHHHHhcCCCHHHHHHHHHHhCHhhccccC
Confidence 3464 6677778999999999 652 111223333233379999999999999888666666543
No 32
>PF04575 DUF560: Protein of unknown function (DUF560); InterPro: IPR007655 This is a family of hypothetical bacterial proteins.
Probab=48.14 E-value=3.1e+02 Score=27.73 Aligned_cols=95 Identities=16% Similarity=0.086 Sum_probs=54.5
Q ss_pred cccEEEEEEEecCCCCCCceEEEEEEEcce-----------eeEEEEEEecccccCCCCceEEEEEEEEeecCCcccCCC
Q 007922 392 SGLIGSFAYSHRNVFGRNQKLNISLERGQI-----------DSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGN 460 (585)
Q Consensus 392 ~G~~~~~~~~~rNlfG~G~~l~l~~~~g~~-----------~~~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~ 460 (585)
.|+...++...+..+..++.+.+.+..... ...+.++|. ..... ..+++..++...-.
T Consensus 41 ~gl~~~~~~~~~~~l~~~~~l~~~~~~~g~~Y~~~~~~d~~~~~~~~g~~---y~~~~--~~~~~~p~~~~~~~------ 109 (285)
T PF04575_consen 41 HGLSYSASASKRWPLKGNHYLKFRASAYGKYYWDNSDYDDLSLRLSAGYG---YRDAR--HSLSLGPFYEQRWY------ 109 (285)
T ss_pred eeEEEEEEEEEEEecCCCeEEEEEEEEeeEEeCCCCCCChhheEEEeeEE---EEccc--eEEEEEeeeeeecc------
Confidence 555666777777777777777777766421 122222221 11111 23444444443211
Q ss_pred CCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEee
Q 007922 461 QPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGAR 500 (585)
Q Consensus 461 ~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~ 500 (585)
. .+--....|+.+.+++.++++|.+.+.+++.+.+..
T Consensus 110 --g-~~~y~~~~G~~~~~~~~l~~~~~~~~~~~~~~~~y~ 146 (285)
T PF04575_consen 110 --G-GDRYSRSYGASLSWSYWLSPRWQLSGSLEYKRKRYR 146 (285)
T ss_pred --c-CchhhhcccEEEEEEEEcCCCeEEEEEeeeehhhcC
Confidence 1 112234568889999999999999999988876553
No 33
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=44.99 E-value=56 Score=26.86 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=38.6
Q ss_pred CCcEEEEEEEeeCCceEEEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHH
Q 007922 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSI 258 (585)
Q Consensus 203 ~~~v~v~~~V~eG~~~~~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I 258 (585)
.+.+.|.++|+.| .++++.|.|+-... ..+.++-..-.|.+|+.+.+.+..+.+
T Consensus 15 ~G~v~v~~~V~~G-~I~~i~i~gDf~~~-~~i~~le~~L~G~~~~~~~i~~~l~~~ 68 (86)
T PF10437_consen 15 WGTVEVHLNVKNG-IIKDIKIYGDFFGP-EDIEELEEALIGCPYDREAIKEALNSV 68 (86)
T ss_dssp TEEEEEEEEEETT-EEEEEEEEECBS-C-CCHHHHHHHHTTCBSSHHHHHHHHHHC
T ss_pred CceEEEEEEEECC-EEEEEEEECCCCCc-hHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 3668999999776 58899999975422 224443334489999999998877765
No 34
>TIGR03016 pepcterm_hypo_1 uncharacterized protein, PEP-CTERM system associated. Members of this protein family are found predominantly in exopolysaccharide biosynthesis operons marked by the presence of the EpsH-family putative exosortase and presence in the genome of the PEP-CTERM protein sorting signal. Members of this family may be distantly related to the EpsL family modeled in TIGR03014.
Probab=43.77 E-value=1.6e+02 Score=32.15 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=44.2
Q ss_pred eeEEEEEEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCC-CeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 007922 422 DSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNS-SLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSG 498 (585)
Q Consensus 422 ~~~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~-~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~ 498 (585)
...+++.+.+-|. .. +++++++.|.+.++. .. +-+.+++.++++++|.++++..+++++.|....
T Consensus 345 ~~~~~~~~~h~l~--~r--l~~~l~~~y~~~dy~--------~~~~r~d~~~~~~~gl~Y~~~~~~~~~l~Y~y~~~d 410 (431)
T TIGR03016 345 QTGGSVLLTHRLS--PR--LTANLGLTYERNEGS--------GTNDQETDRTSVSAGLSYQLGENTTGSLTYRYQERD 410 (431)
T ss_pred EEeeeEEEEEecc--cc--cceeEEEEEEEeecc--------CCCCcccceEEEEEEEEEEecCCcEEEEEEEEEEec
Confidence 3456677766643 23 456666666654331 12 345578889999999999999999999888643
No 35
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=42.14 E-value=51 Score=33.58 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=58.6
Q ss_pred EEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCccccccccccCCCCCeEEEEEEEE
Q 007922 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV 369 (585)
Q Consensus 290 ~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~vdl~i~v~ 369 (585)
.|..|.|+ || ..+.++.|++.+.+..+..+=.-++++..++|......++|.|.-.- |++ |.|.|+
T Consensus 61 ~i~~v~v~------Gn---~~~s~~~I~~~~~l~~~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~~---Pnt--v~I~v~ 126 (269)
T COG1589 61 PIRKVSVS------GN---NQVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQF---PNT--LEIEVV 126 (269)
T ss_pred cceEEEEe------cC---cccCHHHHHHHhhhccCCceEEEcHHHHHHHHHhCCCeEEEEEEEeC---CCc--EEEEEE
Confidence 68999999 99 67779999999999999988888889999999999999988886542 333 688999
Q ss_pred EcCC
Q 007922 370 ERPS 373 (585)
Q Consensus 370 E~~~ 373 (585)
|+..
T Consensus 127 Er~p 130 (269)
T COG1589 127 EREP 130 (269)
T ss_pred Eeee
Confidence 9875
No 36
>PF15603 Imm45: Immunity protein 45
Probab=39.31 E-value=55 Score=27.15 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=39.8
Q ss_pred EEEEEEeeCCceE---EEEEEcCC-----CCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc
Q 007922 207 RLVFQVEPNQEFH---GLVCEGAN-----VLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL 267 (585)
Q Consensus 207 ~v~~~V~eG~~~~---~I~i~G~~-----~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY 267 (585)
.++|.+.+|..++ ..-+.++. ++-...+..--.+..+.+++..++++..++|.+++.++|.
T Consensus 9 ~i~~el~~G~~~~~~GE~l~~~~~~~~~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~ 77 (82)
T PF15603_consen 9 YITFELEEGARRKAQGEMLLTGNDNDGDFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGM 77 (82)
T ss_pred ceEEEecCCEEEEEeeeEEEeccCCCcCEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCce
Confidence 4666777776544 22222111 1112233333357778899999999999999999999986
No 37
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=39.09 E-value=63 Score=32.92 Aligned_cols=120 Identities=12% Similarity=0.103 Sum_probs=65.5
Q ss_pred ceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCC---CcccHHHHHHHHHHHHHcCCCceEEEEEeeCCCcEEEEEEEe
Q 007922 137 VLISEVLVRNKDGEELERKDLETEALTALKACRAN---SALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVE 213 (585)
Q Consensus 137 ~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g---~~~~~~~l~~d~~~L~~~GYf~a~v~~~~~~~~~v~v~~~V~ 213 (585)
..|++|.|+| |..++++++++.+. ...+ -.++...+++.++ ..-+... +.+.-. =+-+|.+.|+
T Consensus 60 ~~i~~v~v~G--n~~~s~~~I~~~~~-----l~~~~~~~~ld~~~~~~~i~---~~PwVk~-a~V~r~--~Pntv~I~v~ 126 (269)
T COG1589 60 FPIRKVSVSG--NNQVSEEDILKALG-----LDGGTSFLTLDLNAIRENIE---KLPWVKS-AEVRRQ--FPNTLEIEVV 126 (269)
T ss_pred ccceEEEEec--CcccCHHHHHHHhh-----hccCCceEEEcHHHHHHHHH---hCCCeEE-EEEEEe--CCCcEEEEEE
Confidence 4799999999 89999999988552 2223 3345555544444 4444432 122111 1235778889
Q ss_pred eCCceE---------EEEEEcCC-CCChhHHH--hhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEE
Q 007922 214 PNQEFH---------GLVCEGAN-VLPTKFVE--DAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGM 270 (585)
Q Consensus 214 eG~~~~---------~I~i~G~~-~~~~~~L~--~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~ 270 (585)
|.+++- -|.-.|.. ..+.. .. ..+..-.|-......+.+..+.+..+.+..++ .+.
T Consensus 127 Er~piA~w~~~~~~~~i~~~G~~~~~~~~-~~~~~~lp~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 195 (269)
T COG1589 127 EREPIAYWQRNDDYHLIDENGNLFIVPSD-RPKLPVLPLLVGPEGADPKVKALLEQLSALLALLGEVIKA 195 (269)
T ss_pred EeeeEEEEecCCCcceEcCCCcEEeccCC-cccccceeeccCCchhhHHHHHHHHHHHHHHHhhcceEEE
Confidence 988864 11123421 11211 11 12333345345555666666667777777777 444
No 38
>PF12094 DUF3570: Protein of unknown function (DUF3570); InterPro: IPR021953 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 396 to 444 amino acids in length.
Probab=38.51 E-value=5.6e+02 Score=27.99 Aligned_cols=29 Identities=0% Similarity=-0.002 Sum_probs=22.8
Q ss_pred eEEEEEEEEEEEEEcCCCeEEEEEEEEEE
Q 007922 468 TIGRVTAGMEFSRPIRPKWSGTVGLIFQH 496 (585)
Q Consensus 468 ~~~~~~~~~~l~~pl~~~~~~slgl~~~~ 496 (585)
..+.+.+.+++++-+++++.+.+.+.+..
T Consensus 210 ~r~t~~~~lG~TQVl~k~~~~~~n~~~~~ 238 (420)
T PF12094_consen 210 DRNTYSLSLGLTQVLNKNLLVQFNYDYSY 238 (420)
T ss_pred cceeeeeeeeeEEEECcccEEEEEEEEEE
Confidence 45667888999999999998777776654
No 39
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=35.93 E-value=5.7e+02 Score=27.35 Aligned_cols=98 Identities=10% Similarity=0.023 Sum_probs=52.8
Q ss_pred ccccEEEEEEEecCCCCCCceEEEEEEEcce-----------eeEEEEEEecccccCCCCceEEEEEEEEeecCCcccCC
Q 007922 391 LSGLIGSFAYSHRNVFGRNQKLNISLERGQI-----------DSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHG 459 (585)
Q Consensus 391 ~~G~~~~~~~~~rNlfG~G~~l~l~~~~g~~-----------~~~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~ 459 (585)
..|+.+.+++ .+....+..+.+.+..... ...+++++..- +.++ +.+.+++.+...++. +
T Consensus 250 fsg~~~~~~~--~w~pt~~t~l~l~~sr~~~~~~~~~~~y~~~~~~~l~~~~~--~~~~--v~~~~~~~y~~~dY~---g 320 (381)
T TIGR03014 250 FSGVIGRLNA--DWMVTGKTSLNAAISRELANYQTVTSSYYRNRGTSIGPTWQ--ATSK--IAVRGRLDYEERDFE---G 320 (381)
T ss_pred ccceeEEEEE--EEcccCcEEEEEEEEeccCCccccccceEEEEEEEEeeEee--ccce--EEEEEEEEEEEeecc---C
Confidence 3455444444 3445555666666665421 12334443222 2333 456666666554331 1
Q ss_pred C-CCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEE
Q 007922 460 N-QPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (585)
Q Consensus 460 ~-~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~ 497 (585)
. ......-+-+...+++++.|++.+++.+++++.+++.
T Consensus 321 ~~~~~~~~R~D~~~~~~~~~~Y~~~~~~~~~l~~~~~~r 359 (381)
T TIGR03014 321 DPLVGPPARSDRTRSGSLSLDWSPVRAVRISAAFQREKR 359 (381)
T ss_pred ccccCCCccccceEEEEEEEEEEEcceEEEEEEEEEEec
Confidence 0 0000113345677888999999999988888888764
No 40
>PRK10808 outer membrane protein A; Reviewed
Probab=33.96 E-value=4.5e+02 Score=27.69 Aligned_cols=28 Identities=7% Similarity=0.059 Sum_probs=22.4
Q ss_pred EEEEEEEEEEEEEcCCCeEEEEEEEEEE
Q 007922 469 IGRVTAGMEFSRPIRPKWSGTVGLIFQH 496 (585)
Q Consensus 469 ~~~~~~~~~l~~pl~~~~~~slgl~~~~ 496 (585)
...+.+++++.|.++++|.+.+.+.|..
T Consensus 144 ~~~~~~g~G~~y~~~~~~~~~~ey~~~~ 171 (351)
T PRK10808 144 GVSPVFAGGVEYAITKNWATRLEYQWTN 171 (351)
T ss_pred ceeeEEEEEEEEEecCCeeEEEEEEEEe
Confidence 3455678888999999999999888754
No 41
>PF14905 OMP_b-brl_3: Outer membrane protein beta-barrel family
Probab=33.72 E-value=4.4e+02 Score=28.45 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=28.3
Q ss_pred CeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEeec
Q 007922 466 SLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARD 501 (585)
Q Consensus 466 ~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~d 501 (585)
.+......+.+.+.+++. .|++.+|+.+++.....
T Consensus 200 ~~~~~~~~~y~~~~~~~~-~~~~~~Glr~e~~~~~~ 234 (506)
T PF14905_consen 200 RYKENIHALYAQYSYKLG-KWSLNAGLRYEYTRIDY 234 (506)
T ss_pred EEEEEEeeeEEEEEEEEC-CEEEEEeEEEEEEEeec
Confidence 356667778888888888 89999999999877654
No 42
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=33.40 E-value=6e+02 Score=29.40 Aligned_cols=58 Identities=5% Similarity=-0.148 Sum_probs=37.5
Q ss_pred eEEEEEEEEeecCCc--ccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 007922 441 TSRTIMVQNSRTPGT--HVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSG 498 (585)
Q Consensus 441 ~sl~~s~~~~~~~~~--~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~ 498 (585)
+++++++.|...... .-........+|...+..+.+.+.|.+.+++.+.+.+.++...
T Consensus 550 LsL~~~ysY~~~~~Dt~~g~~~~~~~pdy~~~~~~l~l~a~Y~~~~~l~l~l~~~~eny~ 609 (649)
T TIGR03509 550 LSLGGDYSYSNGDSDYKSTTNTGGPYPDYFSNQHRLKLYGKYQLSKSSSLRLDYRYERYS 609 (649)
T ss_pred EEEeeeEEEecCCCcceecccccccCCcccceEEEEEEEEEEecCCCeEEEEEEEEEEEe
Confidence 566666666554331 0001112355676667889999999999999998888776543
No 43
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=32.87 E-value=6.2e+02 Score=27.69 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=33.1
Q ss_pred eEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEE
Q 007922 441 TSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQH 496 (585)
Q Consensus 441 ~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~ 496 (585)
+.+.+.+.|.+.+... ......--+.++.-++++.+|.+++++.+.+++.|.+
T Consensus 353 l~LRaG~~yd~spv~~---~~r~~~~Pd~dr~~~s~G~~y~~~~~~~vd~ay~y~~ 405 (435)
T PRK10716 353 WTFRTGIAFDDSPVPA---QNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMH 405 (435)
T ss_pred eEEEEeeEeccCCCCc---CcccccccCCCCeEEEeeeEEEcCCCcEEEEEEEEEE
Confidence 5677777777554211 0011111233455678888899999999999888864
No 44
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=32.09 E-value=3.6e+02 Score=23.83 Aligned_cols=32 Identities=13% Similarity=-0.046 Sum_probs=24.7
Q ss_pred CeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEE
Q 007922 466 SLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (585)
Q Consensus 466 ~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~ 497 (585)
......+.+++++.++++++|.+.+++.|...
T Consensus 125 ~~~~~~~~~g~G~~y~~~~~~~l~~~y~~~~~ 156 (176)
T PF13505_consen 125 SDSGFGFGLGAGVEYNISDNFSLNAEYRYTFY 156 (176)
T ss_dssp EEEEEEEEEEEEEEEESSTTEEEEEEEEEEEE
T ss_pred CCCceEEEEEEEEEEEECCCEEEEEEEEEEEE
Confidence 34556677888899999999999888887543
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=30.54 E-value=2.3e+02 Score=33.80 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=12.0
Q ss_pred EEEEEEEEEcCCCeEEEEEEEEE
Q 007922 473 TAGMEFSRPIRPKWSGTVGLIFQ 495 (585)
Q Consensus 473 ~~~~~l~~pl~~~~~~slgl~~~ 495 (585)
++++++.|..++...+++++++.
T Consensus 661 ~~~~~~~yr~~e~r~~~~~~~~~ 683 (822)
T PRK14574 661 SASAYVFWKADDKRDAELSVTPS 683 (822)
T ss_pred ecceEEEEEEccceEEEeeeeec
Confidence 44455556665555555554443
No 46
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=28.69 E-value=7.4e+02 Score=26.42 Aligned_cols=67 Identities=9% Similarity=-0.050 Sum_probs=40.3
Q ss_pred eEEEEEEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 007922 423 SIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSG 498 (585)
Q Consensus 423 ~~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~ 498 (585)
-.++++|.. .+. +.+.+.+.|...+... ...+..-...+++.++++++|++++++.+.+++.|....
T Consensus 329 ~~lG~~Y~~----~~~--l~lr~G~~y~~sp~~~---~~~~~~~p~~~~~~~s~G~~y~~~~~~~~d~a~~~~~~~ 395 (427)
T PF03349_consen 329 YRLGAEYKF----NDK--LTLRAGYAYDSSPIPD---ETRDPLLPDTDRHWLSAGAGYRFSKNLSLDFAYQYIFYN 395 (427)
T ss_dssp EEEEEEEES----SSS--EEEEEEEEEEE-SS-C---CC-BSSS--SSEEEEEEEEEEESSSSEEEEEEEEEEEEE
T ss_pred eeeeeEEEc----CcC--EEEEEEEEEeccccCc---cccchhhccCCcEEEEEeeEEEcCCCeEEEEEEEEEEcc
Confidence 456666642 222 5788888887664321 001111124557778888899999999999988887643
No 47
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=27.73 E-value=2.2e+02 Score=29.86 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=50.7
Q ss_pred eecHHHHHHHHHHHHHHHHHCCc-eEE-----EeeEEEeeCcE--EEEEEEEeEEeeEEEEEccccCCCCCCCCCCHHHH
Q 007922 245 VVNIRRLDEVITSINGWYMERGL-FGM-----VSGVEILSGGI--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETI 316 (585)
Q Consensus 245 ~f~~~~l~~~~~~I~~~y~~~GY-~A~-----V~~~~~~~dg~--V~l~V~eg~Ig~I~I~~~d~~~Gn~~~~~t~~~~I 316 (585)
.++.+++....+...+.|.+.-| +.+ +........|. |.+.|..+.|.++.|. |. -..+..+
T Consensus 217 ~lt~~e~~~~~~l~~~ky~s~eW~yg~sp~f~~~~~~r~~~G~v~i~l~v~~g~I~~~~i~------gD----f~~~~~~ 286 (324)
T TIGR00545 217 ILDENKTPDVEKRAKERFQSWEWNFGKTPKFNFKNKKRFTAGGFELHVQVEKGKIVDCKFF------GD----FLSVADI 286 (324)
T ss_pred ecCHHHHHHHHHHHHHhcCCccccCCCCCCCceeeeEecCCCcEEEEEEEeCCEEEEEEEE------CC----CCCcccH
Confidence 34555555544433345655555 422 11111122354 6667778999999999 75 2333334
Q ss_pred HhhcCcCCCCccchHhHHHHHHHHH
Q 007922 317 LRQLTTKKGQVYSMLQGKRDVETVL 341 (585)
Q Consensus 317 ~r~l~l~~G~~ys~~~l~~~~~~L~ 341 (585)
......-.|.+|+.+.+.+.+..+.
T Consensus 287 ~~l~~~L~G~~~~~~~i~~~l~~~~ 311 (324)
T TIGR00545 287 TPVTNRLIGQKYDYDTFAKELENLD 311 (324)
T ss_pred HHHHHHhCCCccCHHHHHHHHHhhh
Confidence 3333333699999999999887765
No 48
>PF11059 DUF2860: Protein of unknown function (DUF2860); InterPro: IPR016896 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.33 E-value=7.5e+02 Score=25.70 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=44.5
Q ss_pred eeeEEEEEEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 007922 421 IDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSG 498 (585)
Q Consensus 421 ~~~~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~ 498 (585)
...++.++|..|+- .. +.+..++.|.+.+ .+......+.+++.+++.+.+.+ +++.+.+.|....
T Consensus 167 ~~~~~~~~y~~~ls--~~--~~L~P~l~Y~~~d--------AdG~A~S~~~~g~~ls~~~~~~r-h~~~lt~~y~~~~ 231 (297)
T PF11059_consen 167 DYYYLKGSYRLPLS--QT--SFLTPSLNYTQRD--------ADGDAMSYDSYGAELSYFKRIGR-HSLALTASYSKRD 231 (297)
T ss_pred ceEEEEEEEEEEec--CC--cEEeeEEEEEEec--------CCCceeccCccCeEEEeeeEccc-ceEEEEEeccccc
Confidence 45789999999973 22 4788888887654 24455666777888888887754 6666666555433
No 49
>PF11059 DUF2860: Protein of unknown function (DUF2860); InterPro: IPR016896 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.48 E-value=7.8e+02 Score=25.59 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=40.6
Q ss_pred eEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEeecCCCCceeeeccCCceeeeecCCCceeeeeEeeE
Q 007922 468 TIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESV 534 (585)
Q Consensus 468 ~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~d~~g~~~~~~~~~~~l~ls~d~~D~~l~Pt~~~~ 534 (585)
+.+...+.+++.+|+++.+-+..++.|.+. |.+|....++.++..+++.+---+..+..++++.
T Consensus 165 d~~~~~~~~~y~~~ls~~~~L~P~l~Y~~~---dAdG~A~S~~~~g~~ls~~~~~~rh~~~lt~~y~ 228 (297)
T PF11059_consen 165 DGDYYYLKGSYRLPLSQTSFLTPSLNYTQR---DADGDAMSYDSYGAELSYFKRIGRHSLALTASYS 228 (297)
T ss_pred cCceEEEEEEEEEEecCCcEEeeEEEEEEe---cCCCceeccCccCeEEEeeeEcccceEEEEEecc
Confidence 344567888888999999999999999874 4455433344444444444444445555565443
No 50
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=25.01 E-value=8.2e+02 Score=25.70 Aligned_cols=32 Identities=6% Similarity=0.279 Sum_probs=26.0
Q ss_pred EEEEEEEEEEEEEcCCCeEEEEEEEEEEEEee
Q 007922 469 IGRVTAGMEFSRPIRPKWSGTVGLIFQHSGAR 500 (585)
Q Consensus 469 ~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~ 500 (585)
.....+++++.|.+++++.+.+.+.|+.....
T Consensus 294 ~~~~~~~~~~~h~~~~~l~~~~~~~~~~~~y~ 325 (381)
T PF10082_consen 294 VRTTSVSLGWTHQLTPRLSLSLSAGYENRDYQ 325 (381)
T ss_pred EEEEEEEEEEEEEeeeeEEEEEEEEEEEeEcC
Confidence 44567778888999999999999999986663
No 51
>PF06629 MipA: MltA-interacting protein MipA; InterPro: IPR010583 This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex [].
Probab=24.85 E-value=6.4e+02 Score=24.40 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=46.0
Q ss_pred eEEEEEEecccccCCCCceEEEEEEEEeecCCc-ccCCCC------CCCCCee---E-EEEEEEEEEEEEcCCCeEEEEE
Q 007922 423 SIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGT-HVHGNQ------PDNSSLT---I-GRVTAGMEFSRPIRPKWSGTVG 491 (585)
Q Consensus 423 ~~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~-~~~~~~------~~~~~y~---~-~~~~~~~~l~~pl~~~~~~slg 491 (585)
..+.+.+..++....++.+...+++.+...+.. .+++.. .....|+ . ...++++.+.|+++++|.+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~y~~yyyGV~~~ea~~s~~~~Y~~~~g~~~~~~~~~~~y~l~~~w~~~~~ 194 (226)
T PF06629_consen 115 YEAELGLSYPFPLGERWTLSPSVGVTYASSKYNDYYYGVSASEAAASGLPAYDPGSGLWSYGVGLSARYPLTENWSLLAG 194 (226)
T ss_pred eEEEEEEEEEEecCCceEEEEeEEEEEecCCcceeEeccCHHHHhccCCccCccCCcceeeEEEEEEEEEECCCEEEEEE
Confidence 455555555555555666677777766554332 122210 1111221 2 5678888999999999999999
Q ss_pred EEEEEE
Q 007922 492 LIFQHS 497 (585)
Q Consensus 492 l~~~~~ 497 (585)
+.|++.
T Consensus 195 ~~~~~l 200 (226)
T PF06629_consen 195 VRYTRL 200 (226)
T ss_pred EEEEEc
Confidence 988863
No 52
>PF01389 OmpA_membrane: OmpA-like transmembrane domain; InterPro: IPR000498 The ompA-like transmembrane domain is present in a number of different outer membrane proteins of several Gram-negative bacteria. Many of the proteins having this domain in the N-terminal also have the conserved bacterial outer membrane protein domain IPR006664 from INTERPRO at the C terminus. The outer membrane protein A of Escherichia coli (OmpA), is one of the most studied proteins in this group []. It has a multifunctional role. OmpA is required for the action of colicins K and L and for the stabilisation of mating aggregates in conjugation. It also serves as a receptor for a number of T-even like phages and can act as a porin with low permeability that allows slow penetration of small solutes []. OmpA consists of a regular, extended eight-stranded beta-barrel and appears to be constructed like an inverse micelle with large water-filled cavities, but does not form a pore. The cavities seem to be highly conserved during evolution. The structure corroborates the concept that all outer membrane proteins consist of beta-barrels []. The beta-barrel membrane anchor appears to be the outer membrane equivalent of the single-chain alpha-helix anchor of the inner membrane.; GO: 0009279 cell outer membrane, 0016021 integral to membrane; PDB: 1G90_A 1QJP_A 3NB3_C 1BXW_A 2GE4_A 2JMM_A 2K0L_A.
Probab=23.14 E-value=4.6e+02 Score=24.90 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=40.2
Q ss_pred EEEEEEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCCC--eeEEEEEEEEEEEEEcCCCeEEEEEEEEE
Q 007922 424 IFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSS--LTIGRVTAGMEFSRPIRPKWSGTVGLIFQ 495 (585)
Q Consensus 424 ~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~--y~~~~~~~~~~l~~pl~~~~~~slgl~~~ 495 (585)
.+.+.+..|.- +.+.+..++.+.+-+.+............. -+.-..-+++++.|.++++|.+.+.++|-
T Consensus 80 ~ls~k~~~plt--d~l~ly~k~G~~~~~~d~~~~~~~~~~~~~~~~~~~s~~~g~G~eY~lt~~~~~rleYq~~ 151 (183)
T PF01389_consen 80 TLSLKFSYPLT--DDLDLYAKAGAAYWQSDYKSSNTNSGSSITNSDDGVSPLAGLGLEYALTPNWSLRLEYQYI 151 (183)
T ss_dssp EEEEEEEEESS--SSEEEEEEEEEEEEEEEEESSSS-SSS-BEEEEEEEEEEEEEEEEEEECTTEEEEEEECCE
T ss_pred EEeEEEEEEcc--CCEEEEEEeeEEEEEeccceecccccCcccccccccceEEEEEEEEEeCcCceeEEEEEEE
Confidence 45556667754 456677777777765432110000000111 22334558888999999999888877664
No 53
>PF03797 Autotransporter: Autotransporter beta-domain; InterPro: IPR005546 Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease []. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs []. In those proteins where the cleavage is auto-catalytic, the peptidase domains belong to MEROPS peptidase families S6 and S8.; PDB: 1UYN_X 1UYO_X 3AEH_B 3QQ2_C 3KVN_A 3SLO_A 3SLT_A 2QOM_B 3SLJ_A.
Probab=22.49 E-value=7.2e+02 Score=24.10 Aligned_cols=38 Identities=8% Similarity=-0.041 Sum_probs=32.7
Q ss_pred CCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEee
Q 007922 463 DNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGAR 500 (585)
Q Consensus 463 ~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~ 500 (585)
....|+.+..++.+++.+.+++++.+.+.+.|.+.++.
T Consensus 23 ~~~~~~~~~~g~~~G~d~~~~~~~~~G~~~g~~~~~~~ 60 (265)
T PF03797_consen 23 GISGYDGDSYGGQLGADYKFNDNLSLGLAFGYGNSDVD 60 (265)
T ss_dssp CSTTEEEEEEEEEEEEEEEETEEEEEEEEEEEEEEEEE
T ss_pred CccceeEEeeEEEEEEEEEeCCCcEEEeEEEEEeeecc
Confidence 45678889999999999999889999999998887774
No 54
>PF11557 DUF3233: Protein of unknown function (DUF3233); InterPro: IPR021621 This is a bacterial family of uncharacterised proteins.
Probab=22.20 E-value=9.3e+02 Score=25.31 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=23.5
Q ss_pred CCeeEEEEEEEEE--EEEEcCCCeEEEEEEEEEEEEeec
Q 007922 465 SSLTIGRVTAGME--FSRPIRPKWSGTVGLIFQHSGARD 501 (585)
Q Consensus 465 ~~y~~~~~~~~~~--l~~pl~~~~~~slgl~~~~~~i~d 501 (585)
+..+...+++-+. ..|+++++|+++.|+...-...++
T Consensus 127 D~~~e~v~g~~~~y~~~~~lse~Wtl~~g~G~hLm~y~N 165 (328)
T PF11557_consen 127 DSNKESVLGLYAEYRYQYQLSEHWTLSFGIGAHLMYYRN 165 (328)
T ss_pred CcccceEeeeeheeeeeeeccccEEEeeccceEEEEEec
Confidence 3445555555544 566789999998887665444443
No 55
>PRK10775 cell division protein FtsQ; Provisional
Probab=21.57 E-value=2.2e+02 Score=29.25 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=50.9
Q ss_pred EEeeEEEEEccccCCCCCCCCCCHHHHHhhc-Cc-CCCCccchHhHHHHHHHHHhCCCccccccccccCCCCCeEEEEEE
Q 007922 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQL-TT-KKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMN 367 (585)
Q Consensus 290 ~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l-~l-~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~vdl~i~ 367 (585)
.|.+|.|. |+. ..+..+.|+..+ .. .+|..+ .-+++...++|.+++...+|.|+-.- |+ .|.|.
T Consensus 57 pl~~V~V~------G~~--~~~~~~~I~~~i~~~~~~g~f~-~~Dl~~i~~~l~~lPWV~~a~VrR~w---Pd--tL~V~ 122 (276)
T PRK10775 57 PLSKLVVT------GER--HYTTNDDIRQAILALGAPGTFM-TQDVNIIQQQIERLPWIKQVSVRKQW---PD--ELKIH 122 (276)
T ss_pred ceeEEEEe------CCe--eeCCHHHHHHHHhhccCCCCce-EEcHHHHHHHHHcCCCeeEEEEEEeC---CC--cEEEE
Confidence 46779999 872 346667776654 33 677877 34788888899999999988886553 23 37888
Q ss_pred EEEcCC
Q 007922 368 VVERPS 373 (585)
Q Consensus 368 v~E~~~ 373 (585)
|+|..+
T Consensus 123 V~Er~P 128 (276)
T PRK10775 123 LVEYVP 128 (276)
T ss_pred EEEeec
Confidence 988875
Done!