Query 007922
Match_columns 585
No_of_seqs 344 out of 2616
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:49:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdz_A TPSB transporter FHAC; 100.0 5.9E-28 2E-32 268.7 38.9 340 211-571 49-431 (554)
2 3mc9_A ALR2269 protein; polype 100.0 6.4E-30 2.2E-34 264.8 17.3 235 130-372 55-308 (316)
3 2x8x_X TLR1789 protein, OMP85; 100.0 4.6E-28 1.6E-32 239.6 24.0 231 134-373 2-235 (235)
4 2qdf_A OMP85, outer membrane p 99.9 4.7E-26 1.6E-30 237.7 23.2 235 129-376 68-333 (335)
5 3efc_A OMP85, outer membrane p 99.9 1.9E-25 6.5E-30 238.6 20.6 234 128-374 66-330 (395)
6 3efc_A OMP85, outer membrane p 99.9 2.2E-26 7.4E-31 245.9 12.1 212 129-356 150-388 (395)
7 2qdf_A OMP85, outer membrane p 99.9 2.6E-20 9E-25 194.1 21.7 220 135-375 6-251 (335)
8 3q6b_A Outer membrane protein 99.8 2.4E-20 8.3E-25 178.9 16.4 151 211-370 28-189 (189)
9 3q6b_A Outer membrane protein 99.5 6.8E-13 2.3E-17 126.9 18.7 132 130-272 28-168 (189)
10 2qdz_A TPSB transporter FHAC; 99.3 1.3E-10 4.5E-15 128.7 23.9 263 131-452 50-337 (554)
11 2x8x_X TLR1789 protein, OMP85; 99.2 1.4E-10 4.8E-15 113.7 16.2 146 130-289 72-233 (235)
12 3mc9_A ALR2269 protein; polype 99.1 1E-09 3.5E-14 113.2 15.6 155 211-378 55-226 (316)
13 2vh1_A FTSQ, cell division pro 60.1 18 0.00063 33.9 7.1 69 291-373 1-72 (220)
14 2vh2_A FTSQ, cell division pro 50.7 18 0.00063 35.0 5.5 71 289-373 26-98 (255)
15 3bs0_A TODX; beta barrel, oute 47.4 2.5E+02 0.0087 28.8 14.5 55 441-498 348-402 (439)
16 3nb3_A Outer membrane protein 38.8 2.9E+02 0.0099 27.1 12.6 28 468-495 138-165 (346)
17 2vh1_A FTSQ, cell division pro 35.5 51 0.0018 30.7 5.8 124 139-271 1-135 (220)
18 3bry_A TBUX; beta barrel, oute 26.0 5.4E+02 0.018 26.2 15.0 53 441-496 350-402 (441)
19 2vh2_A FTSQ, cell division pro 24.3 58 0.002 31.3 4.1 75 135-218 24-99 (255)
20 3pgu_A Long-chain fatty acid t 23.1 6.2E+02 0.021 25.9 14.9 66 423-497 327-392 (427)
21 3qra_A AIL, attachment invasio 20.3 4.3E+02 0.015 23.0 12.8 68 469-536 25-97 (157)
No 1
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=99.97 E-value=5.9e-28 Score=268.68 Aligned_cols=340 Identities=11% Similarity=0.052 Sum_probs=256.7
Q ss_pred EEee---CCceE--EEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEeeE-EEeeCcEEE
Q 007922 211 QVEP---NQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV-EILSGGIIR 283 (585)
Q Consensus 211 ~V~e---G~~~~--~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~~~-~~~~dg~V~ 283 (585)
..+| |++|+ +|.|+|+..+++++|++++..++|++|+.+.|.+++++|+++|+++|| +++|..+ +...++.|+
T Consensus 49 ~~~e~~~g~~~~i~~I~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g~l~ 128 (554)
T 2qdz_A 49 RKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLK 128 (554)
T ss_dssp ----CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETTEEE
T ss_pred CCccccCCceEEEEEEEEECCccCCHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccccCCEEE
Confidence 3468 99866 999999999898999999999999999999999999999999999999 8887654 445678999
Q ss_pred EEEEEeEEeeEEEEEccccCCCCCCCCCCHHHHHh---hcCcCCCCccchHhHHHHHHHHHhCCCccccccccccCCCCC
Q 007922 284 LQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILR---QLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTG 360 (585)
Q Consensus 284 l~V~eg~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r---~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g 360 (585)
|.|+||+|++|.|. |+ .++++.+|++ .+++++|++|+.++|++++++|++++ ..|.+.+.|...++
T Consensus 129 i~v~eG~i~~I~i~------G~---~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~~--~~v~~~~~p~~~~g 197 (554)
T 2qdz_A 129 LKVEWGRIKGWLID------GK---PLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGG--KTGNITIVPADEYG 197 (554)
T ss_dssp EEEECCEEEEEEET------TE---ECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSS--EEEEEEEEECSSTT
T ss_pred EEEEeEEEEEEEEC------CC---CccchhhhhhhhhhccccCCCcCCHHHHHHHHHHHhcCc--hhceEEEecCCCCC
Confidence 99999999999998 98 7889999999 99999999999999999999999999 67888888876789
Q ss_pred eEEEEEEEEEcCCceEEEEEeeeC--CCCCCCccccEEEEEEEecCCCCCCceEEEEEEEcc-------eeeEEEEEEec
Q 007922 361 KVDLIMNVVERPSGGFSAGGGISS--GITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQ-------IDSIFRINYTD 431 (585)
Q Consensus 361 ~vdl~i~v~E~~~~~l~~g~g~st--~~~~~~~~G~~~~~~~~~rNlfG~G~~l~l~~~~g~-------~~~~~~~sy~~ 431 (585)
.++|+|.|+|+++..+.+|++... .- ...++++.+.++++|+||.|++|++++..+. ..+.+.++|+.
T Consensus 198 ~~~l~v~v~e~~~~~~~~g~~~~g~g~~---~tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~ 274 (554)
T 2qdz_A 198 YSYLDLQLQRRALPRVSLGMDNSGPGTP---ENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSV 274 (554)
T ss_dssp EEEEEEEEEECCSCEEEEEEEECSCSSS---CSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEE
T ss_pred eeEEEEEEeeCCcEEEEEEEcCCCCCCC---CccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEE
Confidence 999999999988766666655422 10 0134889999999999999999999999985 67899999999
Q ss_pred ccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEc--CCCeEEEEEEEEEEEEeecCC-CC---
Q 007922 432 PWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPI--RPKWSGTVGLIFQHSGARDEK-GN--- 505 (585)
Q Consensus 432 P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl--~~~~~~slgl~~~~~~i~d~~-g~--- 505 (585)
|+.. +.+.+++.+.+....+ . .......|..++.++++++++|+ ...+++++++.+.+.+..+.. +.
T Consensus 275 P~~~-----~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
T 2qdz_A 275 PLGR-----TRLDLQTGYSTYRNLL-K-TRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLD 347 (554)
T ss_dssp EETT-----EEEEEEEEEEEEECCC-S-SSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTSCC
T ss_pred EEec-----CeEEEEEEEeEEEEEc-c-CCcceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcCcc
Confidence 9863 3455555555432211 0 11123467888889999999999 456666777776665554311 11
Q ss_pred ceeeeccCCceeeeecCCCc--eeeeeEeeEEcC-------------CCCcceeEEEEEEEEEeec---CCCceEEEEEE
Q 007922 506 PIIKDFYSSPLTASGKTNDE--MLIAKFESVYTG-------------SGDQGSSMFVFNMEQGLPV---WPEWLFFNRVN 567 (585)
Q Consensus 506 ~~~~~~~~~~l~ls~d~~D~--~l~Pt~~~~y~~-------------~~d~~~~~~~~~~~~~~~l---~~~~~~f~R~~ 567 (585)
..........++++|+++|. .++|++++.... .++..+.++.+++.++.++ ...+.+.+|+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (554)
T 2qdz_A 348 VSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLG 427 (554)
T ss_dssp CEEEEEEEEEEEEEEEEECSSEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCceEEEEEEEEEEEEEecCeEEEEEEEEEecCCCCCCcCcccccCCCcceEEEEEEEEEEEEEccccCCCEEEEEEEE
Confidence 12234445667777888776 667765444321 1245678888888888885 44566666666
Q ss_pred EeEe
Q 007922 568 ARAR 571 (585)
Q Consensus 568 ~~~~ 571 (585)
++++
T Consensus 428 ~q~~ 431 (554)
T 2qdz_A 428 FQYS 431 (554)
T ss_dssp EEEC
T ss_pred eEec
Confidence 5554
No 2
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.97 E-value=6.4e-30 Score=264.80 Aligned_cols=235 Identities=34% Similarity=0.589 Sum_probs=133.7
Q ss_pred ccCccccceEEEEEEEeCCC----CccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHcCCCceEEEEEe-eCCC
Q 007922 130 SRSDEERVLISEVLVRNKDG----EELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAV-DTRD 204 (585)
Q Consensus 130 ~i~~~~~~~I~~I~f~G~~N----~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~v~~~~-~~~~ 204 (585)
..++|++++|++|.|+| | ..++++.|++ .+ .+++|+.|+.+++++|+++|.+.|||. .|.+.. +..+
T Consensus 55 ~~~Eg~~~~I~~I~i~G--n~~~~~~~~~~~l~~----~l-~~k~G~~~~~~~l~~di~~L~~~GyF~-~V~v~~~~~~~ 126 (316)
T 3mc9_A 55 PETTEPRVLVSEVLVRP--QSGQLTPELETQVYN----VI-RTQPGRTTTRSQLQEDINAIFGTGFFS-NVQASPEDTPL 126 (316)
T ss_dssp ---CCCCEEEEEEEEEE--SSSCCCHHHHHHHHH----HC-CCCTTSEECHHHHHHHHHHHHHTSCEE-EEEEEEEEETT
T ss_pred CCCCCCceEEEEEEEEC--CcccccccCHHHHHh----hc-cCCCCCccCHHHHHHHHHHHHHCCCce-EEEEEEecCCC
Confidence 67999999999999999 8 6777777765 44 589999999999999999999999995 444433 3456
Q ss_pred cEEEEEEEeeCCceEEEEEEcC------CCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEee-EEE
Q 007922 205 GIRLVFQVEPNQEFHGLVCEGA------NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSG-VEI 276 (585)
Q Consensus 205 ~v~v~~~V~eG~~~~~I~i~G~------~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~~-~~~ 276 (585)
++.|+|.|+||+.+++|.|.|+ ..++.+.|++.+.+++|++|+...|.+++++|.++|+++|| +|+|.. .+.
T Consensus 127 ~v~l~~~V~egp~I~~I~~~Gn~~~~~~~~~~~~~L~~~l~l~~G~~~n~~~l~~~~~~I~~~y~~~GY~~A~V~~~~~~ 206 (316)
T 3mc9_A 127 GVRVSFIVQPNPVLSKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQV 206 (316)
T ss_dssp EEEEEEEEEECCBCCEEEEECCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSCEE
T ss_pred eEEEEEEEecCceEEEEEEeccccccccccCCHHHHHHHhcccCCCeeCHHHHHHHHHHHHHHHHHCCCeeEEeeeccEE
Confidence 7999999999999999999999 78888999999999999999999999999999999999999 899885 455
Q ss_pred eeCcEEEEEEEEeEEeeEEEEEcccc------CCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCccccc
Q 007922 277 LSGGIIRLQVAEAEVNNISIRFLDRK------TGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVS 350 (585)
Q Consensus 277 ~~dg~V~l~V~eg~Ig~I~I~~~d~~------~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~ 350 (585)
..++.|+|.|+||+|++|.|...+-. .|+++..++++.+|+|++++++|++||..+|++++++|+++|+|+.|+
T Consensus 207 ~~~g~l~i~V~eG~i~~i~v~~i~~~Gn~~~~~Gn~i~~~t~~~vI~r~l~~~~G~~yn~~~l~~~~~~L~~lg~F~~V~ 286 (316)
T 3mc9_A 207 SENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFNRNTVQKDLQRVFGTGLFEDVN 286 (316)
T ss_dssp CTTSEEEEEEECCEEC----------------------------------------------------------------
T ss_pred CCCCEEEEEEEcCccccEEEEEEeccccccccCCcccccccCHHHHHhhhccCCCCcCCHHHHHHHHHHHHcCCCcceee
Confidence 56788999999998777766521100 033112478999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEEEEEEEEcC
Q 007922 351 IIPQPAGDTGKVDLIMNVVERP 372 (585)
Q Consensus 351 i~~~~~~~~g~vdl~i~v~E~~ 372 (585)
+.+.+...++.+||.|.|+|+.
T Consensus 287 v~~~p~~~~~~vdl~v~v~e~~ 308 (316)
T 3mc9_A 287 VSLDPGTDPTKVNVVVNVVERS 308 (316)
T ss_dssp ----------------------
T ss_pred EEeecCCCCCeEEEEEEEEEcc
Confidence 9998876789999999999976
No 3
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=99.96 E-value=4.6e-28 Score=239.55 Aligned_cols=231 Identities=32% Similarity=0.530 Sum_probs=193.0
Q ss_pred cccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHcCCC-ceEEEEEeeCCCcEEEEEEE
Q 007922 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYF-CSCMPVAVDTRDGIRLVFQV 212 (585)
Q Consensus 134 ~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~~~GYf-~a~v~~~~~~~~~v~v~~~V 212 (585)
++++.|++|.|+| |+....+.|+. .+ .+++|+.|++.++++|+++|++.||| ++.|.... +.+++.|+|.|
T Consensus 2 ~~~~~I~~I~i~G--~~~~~~~~i~~----~l-~~~~g~~~~~~~~~~~~~~L~~~Gyf~~~~v~~~~-~~~~~~l~~~v 73 (235)
T 2x8x_X 2 EPKVLIAEVVVEG--ATPELEQLVYQ----VI-STRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRD-TPLGVRITFVV 73 (235)
T ss_dssp CCCEEEEEEEEES--CCHHHHHHHHH----HC-CCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEEE-ETTEEEEEEEE
T ss_pred CCccEEEEEEEEC--CCccCHHHHHH----hh-ccCCCCccCHHHHHHHHHHHHHCCCcEEEEEEEec-CCCcEEEEEEE
Confidence 6789999999999 77655555544 44 48899999999999999999999996 66665433 34578999999
Q ss_pred eeCCceEEEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEeeE-EEeeCcEEEEEEEEeE
Q 007922 213 EPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV-EILSGGIIRLQVAEAE 290 (585)
Q Consensus 213 ~eG~~~~~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~~~-~~~~dg~V~l~V~eg~ 290 (585)
+|||.+++|.|.|+..++.+.|.+.+.+++|++|+...+.+++++|.++|+++|| +|+|... +...++.|++.|+||.
T Consensus 74 ~eg~~i~~i~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~~l~~~v~eG~ 153 (235)
T 2x8x_X 74 RPYPVLRAVQVAGNQVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGV 153 (235)
T ss_dssp EECCBCCEEEEESCSSSCHHHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTTSEEEEEEECCB
T ss_pred EecceEEEEEEECCccCCHHHHHHHhCccCCCCcCHHHHHHHHHHHHHHHHhCCCeeEEEEeecccCCCcEEEEEEEeCc
Confidence 9999888999999998899999999999999999999999999999999999999 7998765 3345578999999876
Q ss_pred EeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCccccccccccCCCCCeEEEEEEEEE
Q 007922 291 VNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVE 370 (585)
Q Consensus 291 Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~vdl~i~v~E 370 (585)
+..|.|.... -.|+....++++.+|++.+++++|++|+..++++++++|+++|||+.|.+.+.|...++.++|.|.|+|
T Consensus 154 ~~~i~i~~i~-~~G~~~~~~~~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~~~g~f~~v~i~~~~~~~~~~~~l~i~v~e 232 (235)
T 2x8x_X 154 VEQVTYRFLN-KEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDVQVALEPGQNPRRVNLILNIKE 232 (235)
T ss_dssp EEEEEEEEBC-TTSCBCCCCSCHHHHHTTCSCCTTSBCCHHHHHHHHHHHHHHTCEEEEEEEEEECSSTTSEEEEEEEEE
T ss_pred eEEEEEEEec-ccCCcCCCccchhheeeeeecCCCCccCHHHHHHHHHHHHhcCCcccceEEeccCCCCCeeEEEEEEEe
Confidence 6555542110 016610128999999999999999999999999999999999999999998887656789999999999
Q ss_pred cCC
Q 007922 371 RPS 373 (585)
Q Consensus 371 ~~~ 373 (585)
+++
T Consensus 233 ~~t 235 (235)
T 2x8x_X 233 RNT 235 (235)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 4
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=99.94 E-value=4.7e-26 Score=237.67 Aligned_cols=235 Identities=12% Similarity=0.190 Sum_probs=196.7
Q ss_pred cccCccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHH----HcCCCceEEEEEe--eC
Q 007922 129 VSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV--DT 202 (585)
Q Consensus 129 ~~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~~~--~~ 202 (585)
+.+...|++.|++|.|+| |+.+++++|++.+... .++.|..|++..++++.++|. ++|||++.|.... .+
T Consensus 68 l~~~V~e~p~I~~i~~~G--n~~~~~~~l~~~l~~~--~l~~g~~~~~~~~~~~~~~l~~~y~~~GY~~a~v~~~~~~~~ 143 (335)
T 2qdf_A 68 LLVQVKERPTIASITFSG--NKSVKDDMLKQNLEAS--GVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLP 143 (335)
T ss_dssp EEEEEEECCEEEEEEEES--CCSSCHHHHHHHHHTT--TCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEET
T ss_pred EEEEEEeccEEEEEEEEC--CccCCHHHHHHHHHhc--CCCCCcccCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC
Confidence 566666777799999999 9999999999866321 356899999999999999986 5999999996544 25
Q ss_pred CCcEEEEEEEeeCCceE--EEEEEcCCCCChhHHHhhhccCCC---------ceecHHHHHHHHHHHHHHHHHCCc-eEE
Q 007922 203 RDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGL-FGM 270 (585)
Q Consensus 203 ~~~v~v~~~V~eG~~~~--~I~i~G~~~~~~~~L~~~~~lk~G---------~~f~~~~l~~~~~~I~~~y~~~GY-~A~ 270 (585)
.+.+.|+|.|+||++|+ +|.|.|+..++++.|++.+.+++| ++|+...+.+++++|.++|+++|| +++
T Consensus 144 ~~~~~v~~~i~eG~~~~i~~I~~~G~~~~~~~~l~~~~~~~~g~~~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~~~ 223 (335)
T 2qdf_A 144 RNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFN 223 (335)
T ss_dssp TTEEEEEEEEECCCBCEEEEEEEESCCSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTCE
T ss_pred CCeEEEEEEEecCCEEEEEEEEEECCccCCHHHHHHHhccCCCccccccccCCeeCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 67799999999999965 999999999999999998888887 999999999999999999999999 799
Q ss_pred EeeEEEee---Cc--EEEEEEEEe---EEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHh
Q 007922 271 VSGVEILS---GG--IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342 (585)
Q Consensus 271 V~~~~~~~---dg--~V~l~V~eg---~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~ 342 (585)
|....... ++ .|++.|+|| +|++|.|. |+ ..+.+.+|++.+++++|++||..+++++.++|.+
T Consensus 224 v~~~~~~~~~~~~~v~v~i~v~eG~~~~i~~I~i~------g~---~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~l~~ 294 (335)
T 2qdf_A 224 IDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVS------GN---LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKK 294 (335)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECCCCCEEEEEEEE------EE---CTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHH
T ss_pred EcCCEEEEcCCCCEEEEEEEEccCCcEEEEEEEEE------cc---ccCChHHHHHhcCCCCCCccCHHHHHHHHHHHHH
Confidence 87644332 23 588888886 89999999 88 7899999999999999999999999999999885
Q ss_pred ----CCC-ccccccccccCCCCCeEEEEEEEEEcCCceE
Q 007922 343 ----MGI-MEDVSIIPQPAGDTGKVDLIMNVVERPSGGF 376 (585)
Q Consensus 343 ----lg~-F~~V~i~~~~~~~~g~vdl~i~v~E~~~~~l 376 (585)
+|| |..|.+.+.+...++.++|.+.|.|+++..+
T Consensus 295 ~~~~~Gy~f~~v~~~~~~~~~~~~vdv~i~v~e~~~~~v 333 (335)
T 2qdf_A 295 LLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYV 333 (335)
T ss_dssp HHHTTTBSSCEEEEEEEEETTTTEEEEEEEEECCCBCCC
T ss_pred HHHhCCCCceEEEEeeEecCCCCEEEEEEEEeeCCeEEe
Confidence 597 8878777766556789999999999987543
No 5
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=99.93 E-value=1.9e-25 Score=238.62 Aligned_cols=234 Identities=13% Similarity=0.205 Sum_probs=199.1
Q ss_pred ccccCccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHH----HHcCCCceEEEEEe--e
Q 007922 128 SVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAV--D 201 (585)
Q Consensus 128 ~~~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~v~~~~--~ 201 (585)
.+.+++.|+|.|++|.|+| |+.+++++|++.+. .+ .+++|..|++..+++++++| .++|||++.|...+ .
T Consensus 66 ~l~~~v~e~p~I~~I~~~G--n~~~~~~~l~~~l~-~~-~~~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~ 141 (395)
T 3efc_A 66 TLLVQVKERPTIASITFSG--NKSVKDDMLKQNLE-AS-GVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPL 141 (395)
T ss_dssp EEEEEEEECCEEEEEEEES--CTTSCHHHHHHHHH-HH-TCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBC
T ss_pred EEEEEEEEccEEEEEEEEC--CccCCHHHHHHHHH-hc-CCCCCCccCHHHHHHHHHHHHHHHHHcCccceEEEEEEEEC
Confidence 4688888999999999999 99999999998663 23 58899999999999999998 46999999997665 2
Q ss_pred CCCcEEEEEEEeeCCceE--EEEEEcCCCCChhHHHhhhccCCC---------ceecHHHHHHHHHHHHHHHHHCCc-eE
Q 007922 202 TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGL-FG 269 (585)
Q Consensus 202 ~~~~v~v~~~V~eG~~~~--~I~i~G~~~~~~~~L~~~~~lk~G---------~~f~~~~l~~~~~~I~~~y~~~GY-~A 269 (585)
..+++.|+|.|+||++++ +|.|.|+..++++.|++.+.+++| ++|+.+.+++++++|.++|+++|| .|
T Consensus 142 ~~~~v~l~~~V~eG~~~~I~~I~~~Gn~~~~~~~L~~~~~~~~g~~~~~~~~~~~~~~~~l~~d~~~l~~~y~~~GY~~a 221 (395)
T 3efc_A 142 PRNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARF 221 (395)
T ss_dssp TTSEEEEEEEEECCCCCCCCCCEEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred CCCEEEEEEEEecCCeEEEEEEEEECCcccCHHHHHHHHhCCCCccchhhccCCccCHHHHHhHHHHHHHHHHhCCCceE
Confidence 346789999999999855 999999999999999999999999 999999999999999999999999 79
Q ss_pred EEeeEEEe--eC--c-EEEEEEEEe---EEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHH----
Q 007922 270 MVSGVEIL--SG--G-IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDV---- 337 (585)
Q Consensus 270 ~V~~~~~~--~d--g-~V~l~V~eg---~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~---- 337 (585)
+|.+.... .+ . .|++.|+|| +|++|.|. |+ ..+.+..|++.+.+++|++|+..+++++.
T Consensus 222 ~v~~~~~~~~~~~~~v~v~i~V~eG~~y~i~~I~i~------Gn---~~~~~~~l~~~~~l~~G~~y~~~~l~~~~~~l~ 292 (395)
T 3efc_A 222 NIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVS------GN---LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIK 292 (395)
T ss_dssp EEEECCCEECTTSCSEECEEEEECCCCCEEEEECCB------SC---CTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHH
T ss_pred EEeccEEEECCCCcEEEEEEEEecCCCEEEEEEEEE------CC---CCCCHHHHHHHhccCCCCCcCHHHHHHHHHHHH
Confidence 98865432 23 2 588999975 89999999 98 78899999999999999999999999984
Q ss_pred HHHHhCCCc-cccccccccCCCCCeEEEEEEEEEcCCc
Q 007922 338 ETVLTMGIM-EDVSIIPQPAGDTGKVDLIMNVVERPSG 374 (585)
Q Consensus 338 ~~L~~lg~F-~~V~i~~~~~~~~g~vdl~i~v~E~~~~ 374 (585)
+.+.+.||+ ..|...+....+.+.++|.+.|.|++..
T Consensus 293 ~~~~~~GY~~~~v~~~~~~~~~~~~v~l~~~v~eG~~~ 330 (395)
T 3efc_A 293 KLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRF 330 (395)
T ss_dssp HHHHHTTCSSCEEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred HHHHhCCCCccEEEEeeEecCCCCEEEEEEEEEeCCeE
Confidence 455678994 4555444444567899999999999864
No 6
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=99.93 E-value=2.2e-26 Score=245.91 Aligned_cols=212 Identities=14% Similarity=0.225 Sum_probs=134.4
Q ss_pred cccCccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCC---------CcccHHHHHHHHHHHH----HcCCCceE
Q 007922 129 VSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRAN---------SALTVREVQEDVHRII----DSGYFCSC 195 (585)
Q Consensus 129 ~~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g---------~~~~~~~l~~d~~~L~----~~GYf~a~ 195 (585)
.+|++|+++.|.+|.|.| |+.+++++|++ .+ .++++ +.|+++.+++|+++|. ++|||++.
T Consensus 150 ~~V~eG~~~~I~~I~~~G--n~~~~~~~L~~----~~-~~~~g~~~~~~~~~~~~~~~~l~~d~~~l~~~y~~~GY~~a~ 222 (395)
T 3efc_A 150 LVFQEGVSAEIQQINIVG--NHAFTTDELIS----HF-QLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFN 222 (395)
T ss_dssp EEEECCCCCCCCCCEEES--CCSSCTTTTGG----GC-CCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCE
T ss_pred EEEecCCeEEEEEEEEEC--CcccCHHHHHH----HH-hCCCCccchhhccCCccCHHHHHhHHHHHHHHHHhCCCceEE
Confidence 389999999999999999 99999999986 34 46777 9999999999999985 79999999
Q ss_pred EEEE---ee-CCCcEEEEEEEeeCCceE--EEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-e
Q 007922 196 MPVA---VD-TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-F 268 (585)
Q Consensus 196 v~~~---~~-~~~~v~v~~~V~eG~~~~--~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~ 268 (585)
|... +. +.+.+.|+|.|+||++|+ +|.|.|+..++++.|++.+.+++|++|+...+.+++++|.++|+++|| +
T Consensus 223 v~~~~~~~~~~~~~v~v~i~V~eG~~y~i~~I~i~Gn~~~~~~~l~~~~~l~~G~~y~~~~l~~~~~~l~~~~~~~GY~~ 302 (395)
T 3efc_A 223 IDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAY 302 (395)
T ss_dssp EEECCCEECTTSCSEECEEEEECCCCCEEEEECCBSCCTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EeccEEEECCCCcEEEEEEEEecCCCEEEEEEEEECCCCCCHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHhCCCCc
Confidence 8642 22 456799999999999976 999999998899999999999999999999999999999999999999 8
Q ss_pred EEEeeEEEee--CcE--EEEEEEEe---EEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHH
Q 007922 269 GMVSGVEILS--GGI--IRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL 341 (585)
Q Consensus 269 A~V~~~~~~~--dg~--V~l~V~eg---~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~ 341 (585)
++|.+..... ++. |++.|+|+ +|++|.|. || .++++.+|+|+++++||++||..+++++.++|.
T Consensus 303 ~~v~~~~~~~~~~~~v~l~~~v~eG~~~~i~~I~i~------Gn---~~~~~~virr~~~~~~G~~y~~~~l~~~~~~L~ 373 (395)
T 3efc_A 303 PRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFE------GN---DTSKDAVLRREMRQMEGAWLGSDLVDQGKERLN 373 (395)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECCCCCCC--------------------------------------------------
T ss_pred cEEEEeeEecCCCCEEEEEEEEEeCCeEEEEEEEEE------CC---CcCChHHHhhhcccCCCccCCHHHHHHHHHHHH
Confidence 9988643332 344 77888875 79999999 99 899999999999999999999999999999999
Q ss_pred hCCCccccccccccC
Q 007922 342 TMGIMEDVSIIPQPA 356 (585)
Q Consensus 342 ~lg~F~~V~i~~~~~ 356 (585)
++|||+.|++++.+.
T Consensus 374 ~lg~F~~V~i~~~~~ 388 (395)
T 3efc_A 374 RLGFFETVDTDTQRV 388 (395)
T ss_dssp ---------------
T ss_pred hCCCcceeeeeccCC
Confidence 999999999988654
No 7
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=99.85 E-value=2.6e-20 Score=194.08 Aligned_cols=220 Identities=14% Similarity=0.254 Sum_probs=178.6
Q ss_pred ccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHcCCCceEEEEEeeCCCcEEEEEEEee
Q 007922 135 ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEP 214 (585)
Q Consensus 135 ~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~v~~~~~~~~~v~v~~~V~e 214 (585)
..+.|.+|.|+| ++.++.+.|+. .+ .+++|+.+++..+.+++++|++.|||+. |.+..+ +..|+|.|+|
T Consensus 6 ~~~~i~~i~v~G--~~~~~~~~i~~----~l-~~~~g~~~~~~~i~~~i~~L~~~g~f~~-v~v~~~---~~~l~~~V~e 74 (335)
T 2qdf_A 6 EGFVVKDIHFEG--LQRVAVGAALL----SM-PVRTGDTVNDEDISNTIRALFATGNFED-VRVLRD---GDTLLVQVKE 74 (335)
T ss_dssp CCEECCEEEEES--CSSSCHHHHHH----TS-SCCTTCEECHHHHHHHHHHHHTTSCEEE-EEEEEE---TTEEEEEEEE
T ss_pred CCceEeEEEEEC--CEEcCHHHHHH----hc-CCCCCCccCHHHHHHHHHHHHhCCCcce-EEEEeC---CCEEEEEEEe
Confidence 358899999999 78899888886 34 5899999999999999999999999975 333332 3579999999
Q ss_pred CCceEEEEEEcCCCCChhHHHhhhc---cCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEeeEEEe-eCc--EEEEEEE
Q 007922 215 NQEFHGLVCEGANVLPTKFVEDAFR---DGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGVEIL-SGG--IIRLQVA 287 (585)
Q Consensus 215 G~~~~~I~i~G~~~~~~~~L~~~~~---lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~~~~~~-~dg--~V~l~V~ 287 (585)
||++++|.|+|+..++++.|++.+. ++.|++|+...+++++++|.++|+++|| .|+|...... .++ .|+|.|+
T Consensus 75 ~p~I~~i~~~Gn~~~~~~~l~~~l~~~~l~~g~~~~~~~~~~~~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~~v~~~i~ 154 (335)
T 2qdf_A 75 RPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQ 154 (335)
T ss_dssp CCEEEEEEEESCCSSCHHHHHHHHHTTTCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETTTEEEEEEEEE
T ss_pred ccEEEEEEEECCccCCHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCeEEEEEEEe
Confidence 9999999999999999999998874 4499999999999999999999999999 6998876543 345 5888999
Q ss_pred Ee---EEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCC---------CccchHhHHHHHHHHHh----CCCcccccc
Q 007922 288 EA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKG---------QVYSMLQGKRDVETVLT----MGIMEDVSI 351 (585)
Q Consensus 288 eg---~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G---------~~ys~~~l~~~~~~L~~----lg~F~~V~i 351 (585)
|| +|++|.|. |+ ....+..|++.+.+++| ++|+..+++++.++|.+ .||+. +.+
T Consensus 155 eG~~~~i~~I~~~------G~---~~~~~~~l~~~~~~~~g~~~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~-~~v 224 (335)
T 2qdf_A 155 EGVSAEIQQINIV------GN---HAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYAR-FNI 224 (335)
T ss_dssp CCCBCEEEEEEEE------SC---CSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTT-CEE
T ss_pred cCCEEEEEEEEEE------CC---ccCCHHHHHHHhccCCCccccccccCCeeCHHHHHHHHHHHHHHHHHCCCeE-EEE
Confidence 86 59999999 98 78899999999999987 99999999998877654 58874 444
Q ss_pred c---cccCCCCCeEEEEEEEEEcCCce
Q 007922 352 I---PQPAGDTGKVDLIMNVVERPSGG 375 (585)
Q Consensus 352 ~---~~~~~~~g~vdl~i~v~E~~~~~ 375 (585)
. +....+.+.++|.+.|.|++...
T Consensus 225 ~~~~~~~~~~~~~v~v~i~v~eG~~~~ 251 (335)
T 2qdf_A 225 DSTQVSLTPDKKGIYVTVNITEGDQYK 251 (335)
T ss_dssp EEEEEEECTTSSEEEEEEEEECCCCCE
T ss_pred cCCEEEEcCCCCEEEEEEEEccCCcEE
Confidence 2 22223567899999999998643
No 8
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=99.84 E-value=2.4e-20 Score=178.89 Aligned_cols=151 Identities=18% Similarity=0.244 Sum_probs=130.3
Q ss_pred EEeeCCceE--EEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEeeE-EE-eeCc--EEE
Q 007922 211 QVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV-EI-LSGG--IIR 283 (585)
Q Consensus 211 ~V~eG~~~~--~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~~~-~~-~~dg--~V~ 283 (585)
..+|||+|+ +|.|.|+..++.+.|++.+.+++|++|+...+.+++++|.++|+++|| +|+|... .. ..++ .|+
T Consensus 28 ~~~~~~~y~i~~I~i~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~~~~v~l~ 107 (189)
T 3q6b_A 28 GGQQMGRYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLR 107 (189)
T ss_dssp -------CEEEEEEEEEECTTCHHHHHHHTCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEEEEEEEECCCcCCHHHHHHhhCCCCCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEecCCCCEEEEE
Confidence 447889876 999999999999999999999999999999999999999999999999 8998874 22 2344 477
Q ss_pred EEEEEe---EEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCccccccccccC-CCC
Q 007922 284 LQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GDT 359 (585)
Q Consensus 284 l~V~eg---~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~-~~~ 359 (585)
|.|++| +|++|.|. |+ .++++.+|++.+++++|++||..++++++++|+++|+|+.|++.+.+. ..+
T Consensus 108 ~~V~eG~~~~i~~I~i~------Gn---~~~~~~~i~r~l~~~~G~~~n~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~ 178 (189)
T 3q6b_A 108 VNVDAGNRFYVRKIRFE------GN---DTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSP 178 (189)
T ss_dssp EEEECCCCCEEEEEEEE------SC---SSSCHHHHHTTCCSCTTSBCCHHHHHHHHHHHHHHSCCSEEEEEEEEETTEE
T ss_pred EEECCCCeEEEEEEEEE------CC---ccCCHHHHHhhccCCCCCccCHHHHHHHHHHHHhCCCceeeEEEeccCCCCC
Confidence 888886 79999999 98 899999999999999999999999999999999999999999998875 367
Q ss_pred CeEEEEEEEEE
Q 007922 360 GKVDLIMNVVE 370 (585)
Q Consensus 360 g~vdl~i~v~E 370 (585)
+.+||.|.|+|
T Consensus 179 ~~vdv~v~V~E 189 (189)
T 3q6b_A 179 DQVDVVYKVKE 189 (189)
T ss_dssp EEEEEEEEEEC
T ss_pred CEEEEEEEEEC
Confidence 89999999986
No 9
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=99.50 E-value=6.8e-13 Score=126.90 Aligned_cols=132 Identities=16% Similarity=0.193 Sum_probs=105.8
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHH----HcCCCceEEEEE--ee-C
Q 007922 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVA--VD-T 202 (585)
Q Consensus 130 ~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~~--~~-~ 202 (585)
..++++++.|.+|.|.| |..++.++|++. + .+++|+.|+...++++.++|. ++||+.+.|... .+ .
T Consensus 28 ~~~~~~~y~i~~I~i~G--~~~~~~~~L~~~----~-~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~ 100 (189)
T 3q6b_A 28 GGQQMGRYKLSGVEVSG--NLAGHSAEIEQL----T-KIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDA 100 (189)
T ss_dssp -------CEEEEEEEEE--ECTTCHHHHHHH----T-CCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETT
T ss_pred CCCCCCCEEEEEEEEEC--CCcCCHHHHHHh----h-CCCCCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEecCC
Confidence 44678999999999999 888888888863 3 488999999999999998884 699999998653 23 3
Q ss_pred CCcEEEEEEEeeCCceE--EEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCceEEEe
Q 007922 203 RDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVS 272 (585)
Q Consensus 203 ~~~v~v~~~V~eG~~~~--~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY~A~V~ 272 (585)
.+.+.|+|.|+||++|+ +|.|.|+....+..|++.+.+++|++|+..++++.+++|. +.|||..|.
T Consensus 101 ~~~v~l~~~V~eG~~~~i~~I~i~Gn~~~~~~~i~r~l~~~~G~~~n~~~l~~~~~~L~----~lg~F~~V~ 168 (189)
T 3q6b_A 101 DKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLN----RLGFFETVD 168 (189)
T ss_dssp TTEEEEEEEEECCCCCEEEEEEEESCSSSCHHHHHTTCCSCTTSBCCHHHHHHHHHHHH----HHSCCSEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEEEECCccCCHHHHHhhccCCCCCccCHHHHHHHHHHHH----hCCCceeeE
Confidence 45689999999999866 9999999988889999999999999999999998887764 479864433
No 10
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=99.32 E-value=1.3e-10 Score=128.75 Aligned_cols=263 Identities=18% Similarity=0.119 Sum_probs=171.1
Q ss_pred cCc---cccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHH----HcCCCceEEEEEe-eC
Q 007922 131 RSD---EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV-DT 202 (585)
Q Consensus 131 i~~---~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~~~-~~ 202 (585)
.+| |+++.|++|.|+| |..+++++|++. + ..+.|++|+.+.+++++++|. ++||..+.|.... +-
T Consensus 50 ~~e~~~g~~~~i~~I~~~G--~~~~~~~~l~~~----~-~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~ 122 (554)
T 2qdz_A 50 KPDATSGHTVTVHAVDLDF--GVEGRLFDPAPL----V-QDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGV 122 (554)
T ss_dssp ---CBCCCSSSSCCEEEEC--CSSSCCCSCSTT----S-TTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEE
T ss_pred CccccCCceEEEEEEEEEC--CccCCHHHHHHH----h-HhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccc
Confidence 357 8999999999999 899999988863 2 367899999999999999984 7999999885433 21
Q ss_pred CCcEEEEEEEeeCCceEEEEEEcCCCCChhHHHh---hhccCCCceecHHHHHHHHHHHHHHHHHCCceEEEeeEEE--e
Q 007922 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVED---AFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEI--L 277 (585)
Q Consensus 203 ~~~v~v~~~V~eG~~~~~I~i~G~~~~~~~~L~~---~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY~A~V~~~~~--~ 277 (585)
.++ .|+|.|.||+ +.+|.|.|+....+..++. .+.+++|++|+..+|++..++|.+. + ..|..... .
T Consensus 123 ~~g-~l~i~v~eG~-i~~I~i~G~~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~----~--~~v~~~~~p~~ 194 (554)
T 2qdz_A 123 VDG-VLKLKVEWGR-IKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNG----G--KTGNITIVPAD 194 (554)
T ss_dssp ETT-EEEEEEECCE-EEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSS----S--EEEEEEEEECS
T ss_pred cCC-EEEEEEEeEE-EEEEEECCCCccchhhhhhhhhhccccCCCcCCHHHHHHHHHHHhcC----c--hhceEEEecCC
Confidence 223 5999999996 7899999998777888888 8899999999999999998887764 3 33332222 2
Q ss_pred eCc--EEEEEEEEeEEeeEEEEEccccCC--CCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCc-cccccc
Q 007922 278 SGG--IIRLQVAEAEVNNISIRFLDRKTG--EPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIM-EDVSII 352 (585)
Q Consensus 278 ~dg--~V~l~V~eg~Ig~I~I~~~d~~~G--n~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F-~~V~i~ 352 (585)
.++ +|.+.|.|.+--.+.+.+++. | . ..+ |-+ -.+.+.
T Consensus 195 ~~g~~~l~v~v~e~~~~~~~~g~~~~--g~g~---~~t--------------------------------g~~~~~~~~~ 237 (554)
T 2qdz_A 195 EYGYSYLDLQLQRRALPRVSLGMDNS--GPGT---PEN--------------------------------GRYKYNASVT 237 (554)
T ss_dssp STTEEEEEEEEEECCSCEEEEEEEEC--SCSS---SCS--------------------------------SCEEEEEEEE
T ss_pred CCCeeEEEEEEeeCCcEEEEEEEcCC--CCCC---CCc--------------------------------cceEEEEEEE
Confidence 234 477777775433455542211 2 1 111 110 112222
Q ss_pred ccc-CCCCCeEEEEEEEEE----cCCceEEEEEeeeCCCCCCCccccEEEEEEEecC--CCCCCceEEEEEEEcceeeEE
Q 007922 353 PQP-AGDTGKVDLIMNVVE----RPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRN--VFGRNQKLNISLERGQIDSIF 425 (585)
Q Consensus 353 ~~~-~~~~g~vdl~i~v~E----~~~~~l~~g~g~st~~~~~~~~G~~~~~~~~~rN--lfG~G~~l~l~~~~g~~~~~~ 425 (585)
... -...+.+.+.+.+.+ ++.+...++++|+.... ..++.+.+.+...| +.|.+..+ .+......+
T Consensus 238 ~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~ 310 (554)
T 2qdz_A 238 ANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLG---RTRLDLQTGYSTYRNLLKTRYGQY----QSAGNSRSF 310 (554)
T ss_dssp EECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEET---TEEEEEEEEEEEEECCCSSSSCCC----CCEEEEEEE
T ss_pred eCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEEEe---cCeEEEEEEEeEEEEEccCCcceE----EEEeeEEEE
Confidence 221 123567788888876 34456666777764311 14556666666655 55544322 223345678
Q ss_pred EEEEecccccCCCCceEEEEEEEEeec
Q 007922 426 RINYTDPWIEGDDKRTSRTIMVQNSRT 452 (585)
Q Consensus 426 ~~sy~~P~~~~~~~~~sl~~s~~~~~~ 452 (585)
++.+..|+.....+.+++++.+.+.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (554)
T 2qdz_A 311 GLKATRLLYRDTRSQFSVYGGLKLRQN 337 (554)
T ss_dssp EEEEEEEEECCSSEEEEEEEEEEEEEE
T ss_pred EEEEEEEEEECCCeEEEEEEEEEEEEe
Confidence 888899987655555677777666543
No 11
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=99.23 E-value=1.4e-10 Score=113.72 Aligned_cols=146 Identities=20% Similarity=0.205 Sum_probs=112.0
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHH----HcCCCceEEEEEe-eCCC
Q 007922 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV-DTRD 204 (585)
Q Consensus 130 ~i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~~~-~~~~ 204 (585)
+|++|+ .|.+|.|.| |..++.+.|++.+ ..++|..|+...+.++.++|. ++|||.+.+.... ...+
T Consensus 72 ~v~eg~--~i~~i~~~G--~~~~~~~~l~~~~-----~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~ 142 (235)
T 2x8x_X 72 VVRPYP--VLRAVQVAG--NQVLTQEKVNEIF-----APQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPD 142 (235)
T ss_dssp EEEECC--BCCEEEEES--CSSSCHHHHHHHH-----GGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTT
T ss_pred EEEecc--eEEEEEEEC--CccCCHHHHHHHh-----CccCCCCcCHHHHHHHHHHHHHHHHhCCCeeEEEEeecccCCC
Confidence 555665 999999999 8989988888743 477999999999999998874 7999999986543 2233
Q ss_pred cEEEEEEEeeCC--ceE--EEEEEcCC---CCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCceEEEeeEEEe
Q 007922 205 GIRLVFQVEPNQ--EFH--GLVCEGAN---VLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEIL 277 (585)
Q Consensus 205 ~v~v~~~V~eG~--~~~--~I~i~G~~---~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY~A~V~~~~~~ 277 (585)
+ .|+|.|.||+ +|+ .|.|.|+. .+.+..+...+.+++|++|+..++++.+++|. +.|||..+......
T Consensus 143 ~-~l~~~v~eG~~~~i~i~~i~~~G~~~~~~~~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~----~~g~f~~v~i~~~~ 217 (235)
T 2x8x_X 143 G-VVTLQVAEGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLF----ELGLFEDVQVALEP 217 (235)
T ss_dssp S-EEEEEEECCBEEEEEEEEBCTTSCBCCCCSCHHHHHTTCSCCTTSBCCHHHHHHHHHHHH----HHTCEEEEEEEEEE
T ss_pred c-EEEEEEEeCceEEEEEEEecccCCcCCCccchhheeeeeecCCCCccCHHHHHHHHHHHH----hcCCcccceEEecc
Confidence 3 8999999999 444 67778886 66777778888999999999999999988877 66996444322222
Q ss_pred --eCc--EEEEEEEEe
Q 007922 278 --SGG--IIRLQVAEA 289 (585)
Q Consensus 278 --~dg--~V~l~V~eg 289 (585)
.++ .|.+.|.|+
T Consensus 218 ~~~~~~~~l~i~v~e~ 233 (235)
T 2x8x_X 218 GQNPRRVNLILNIKER 233 (235)
T ss_dssp CSSTTSEEEEEEEEEC
T ss_pred CCCCCeeEEEEEEEeC
Confidence 233 477777664
No 12
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.10 E-value=1e-09 Score=113.16 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=112.5
Q ss_pred EEeeCCceE--EEEEEcC----CCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCceEEEeeEEEeeC-c-EE
Q 007922 211 QVEPNQEFH--GLVCEGA----NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSG-G-II 282 (585)
Q Consensus 211 ~V~eG~~~~--~I~i~G~----~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY~A~V~~~~~~~d-g-~V 282 (585)
..+||++++ +|.|+|+ ..++++.|.+.+.+++|+.|+.+.+.+++++|. +.|||+.|.......+ + .|
T Consensus 55 ~~~Eg~~~~I~~I~i~Gn~~~~~~~~~~~l~~~l~~k~G~~~~~~~l~~di~~L~----~~GyF~~V~v~~~~~~~~v~l 130 (316)
T 3mc9_A 55 PETTEPRVLVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQEDINAIF----GTGFFSNVQASPEDTPLGVRV 130 (316)
T ss_dssp ---CCCCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCTTSEECHHHHHHHHHHHH----HTSCEEEEEEEEEEETTEEEE
T ss_pred CCCCCCceEEEEEEEECCcccccccCHHHHHhhccCCCCCccCHHHHHHHHHHHH----HCCCceEEEEEEecCCCeEEE
Confidence 458999976 9999999 777888999999999999999999998877665 4799876654333233 3 58
Q ss_pred EEEEEEe-EEeeEEEEEccccCCCCCC---CCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHh----CCC-cccccccc
Q 007922 283 RLQVAEA-EVNNISIRFLDRKTGEPTK---GKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT----MGI-MEDVSIIP 353 (585)
Q Consensus 283 ~l~V~eg-~Ig~I~I~~~d~~~Gn~~~---~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~----lg~-F~~V~i~~ 353 (585)
+|.|+|+ +|++|.|. |++.. ....++.|++.+.+++|++|+...++++..+|.+ .|| |..|.+..
T Consensus 131 ~~~V~egp~I~~I~~~------Gn~~~~~~~~~~~~~L~~~l~l~~G~~~n~~~l~~~~~~I~~~y~~~GY~~A~V~~~~ 204 (316)
T 3mc9_A 131 SFIVQPNPVLSKVEIQ------ANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAP 204 (316)
T ss_dssp EEEEEECCBCCEEEEE------CCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSC
T ss_pred EEEEecCceEEEEEEe------ccccccccccCCHHHHHHHhcccCCCeeCHHHHHHHHHHHHHHHHHCCCeeEEeeecc
Confidence 8899987 79999999 76211 2467788999999999999999999987777754 698 44555433
Q ss_pred ccCCCCCeEEEEEEEEEcCCceEEE
Q 007922 354 QPAGDTGKVDLIMNVVERPSGGFSA 378 (585)
Q Consensus 354 ~~~~~~g~vdl~i~v~E~~~~~l~~ 378 (585)
... .++. |.+.+.|++-+.+.+
T Consensus 205 ~~~-~~g~--l~i~V~eG~i~~i~v 226 (316)
T 3mc9_A 205 QVS-ENGV--VTLQVAEGVVENISV 226 (316)
T ss_dssp EEC-TTSE--EEEEEECCEEC----
T ss_pred EEC-CCCE--EEEEEEcCccccEEE
Confidence 332 2343 889999984333333
No 13
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=60.11 E-value=18 Score=33.90 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=54.2
Q ss_pred EeeEEEEEccccCCCCCCC-CCCHHHHHhhc-CcCCCCccchHhHHHHHHHHH-hCCCccccccccccCCCCCeEEEEEE
Q 007922 291 VNNISIRFLDRKTGEPTKG-KTRPETILRQL-TTKKGQVYSMLQGKRDVETVL-TMGIMEDVSIIPQPAGDTGKVDLIMN 367 (585)
Q Consensus 291 Ig~I~I~~~d~~~Gn~~~~-~t~~~~I~r~l-~l~~G~~ys~~~l~~~~~~L~-~lg~F~~V~i~~~~~~~~g~vdl~i~ 367 (585)
|.+|.|. |+ . .+..+.|+..+ .+..|..+=.-++++..++|. ..++.++|.|.-.. |++ |.|.
T Consensus 1 v~~V~V~------G~---~~~~s~~~I~~~~~~~~~~~~~~~vd~~~i~~~l~~~~P~V~~a~V~r~~---P~~--l~I~ 66 (220)
T 2vh1_A 1 MSKLVLT------GE---RHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQW---PDE--LKIH 66 (220)
T ss_dssp -CEEEEE------SC---CSSCCHHHHHHHHHTTSCTTCGGGSCHHHHHHHHHHHCTTEEEEEEEEET---TTE--EEEE
T ss_pred CcEEEEe------CC---CccCCHHHHHHHHhhccCCCCeEEECHHHHHHHHHhcCCCEEEEEEEEeC---CCc--eEEE
Confidence 4678999 98 6 58888888888 787777766667788888999 99999999887542 344 6899
Q ss_pred EEEcCC
Q 007922 368 VVERPS 373 (585)
Q Consensus 368 v~E~~~ 373 (585)
|+|+.+
T Consensus 67 V~Er~p 72 (220)
T 2vh1_A 67 LVEYVP 72 (220)
T ss_dssp EEECCE
T ss_pred EEEecc
Confidence 999875
No 14
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=50.71 E-value=18 Score=34.97 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=55.1
Q ss_pred eEEeeEEEEEccccCCCCCCC-CCCHHHHHhhc-CcCCCCccchHhHHHHHHHHHhCCCccccccccccCCCCCeEEEEE
Q 007922 289 AEVNNISIRFLDRKTGEPTKG-KTRPETILRQL-TTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIM 366 (585)
Q Consensus 289 g~Ig~I~I~~~d~~~Gn~~~~-~t~~~~I~r~l-~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g~vdl~i 366 (585)
..|.+|.|. |+ . .+..+.|+..+ .+..|..+=.-++++..++|....+.+.|.|.-.. |++ |.|
T Consensus 26 f~v~~I~V~------G~---~~~vs~~eI~~~~~~~~~g~~~~~vd~~~i~~~l~~~PwV~~a~V~r~~---P~~--L~I 91 (255)
T 2vh2_A 26 LPLSKLVVT------GE---RHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRKQW---PDE--LKI 91 (255)
T ss_dssp -CCCEEEEE------SC---CSSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEEET---TTE--EEE
T ss_pred ceEeEEEEE------CC---CcccCHHHHHHHHhcccCCCccEEEcHHHHHHHHHcCCCeeEEEEEEEC---CCe--EEE
Confidence 368999999 98 6 47888888887 78776766666777778888899999998886543 343 689
Q ss_pred EEEEcCC
Q 007922 367 NVVERPS 373 (585)
Q Consensus 367 ~v~E~~~ 373 (585)
.|+|+.+
T Consensus 92 ~V~Er~P 98 (255)
T 2vh2_A 92 HLVEYVP 98 (255)
T ss_dssp EEEECCC
T ss_pred EEEEeee
Confidence 9999875
No 15
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=47.44 E-value=2.5e+02 Score=28.85 Aligned_cols=55 Identities=2% Similarity=-0.216 Sum_probs=34.1
Q ss_pred eEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEEE
Q 007922 441 TSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSG 498 (585)
Q Consensus 441 ~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~ 498 (585)
+.+++.+.|.+.+... ......-.+..+..++++++|++++++.+.+++.|....
T Consensus 348 ~~lRaG~~yd~sp~~~---~~~~~~~p~~~~~~~s~G~gy~~~~~~~id~a~~y~~~~ 402 (439)
T 3bs0_A 348 LTLRAGYSYAQQALDS---ELILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFGLRE 402 (439)
T ss_dssp EEEEEEEEECC---------CCCTTSCCCCSEEEEEEEEEESSSSEEEEEEEEEEEEE
T ss_pred EEEEEeeEcccCCCCc---ccccccccCccceEEEeeeEEEcCCCcEEEEEEEEEecc
Confidence 5777887777653211 000111123456788899999999999999988887644
No 16
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=38.79 E-value=2.9e+02 Score=27.09 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=22.5
Q ss_pred eEEEEEEEEEEEEEcCCCeEEEEEEEEE
Q 007922 468 TIGRVTAGMEFSRPIRPKWSGTVGLIFQ 495 (585)
Q Consensus 468 ~~~~~~~~~~l~~pl~~~~~~slgl~~~ 495 (585)
....+.+++++.|.++++|.+.+++.|.
T Consensus 138 ~~~~~~~G~Gv~y~lt~~~~l~~ey~y~ 165 (346)
T 3nb3_A 138 TGVSPVFAGGVEYAITPEIATRLEYQWT 165 (346)
T ss_dssp EEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CccceeEEeEEEEEeCCCeeEEEEEEEE
Confidence 3455678888899999999999988774
No 17
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=35.47 E-value=51 Score=30.70 Aligned_cols=124 Identities=10% Similarity=0.093 Sum_probs=62.4
Q ss_pred EEEEEEEeCCCC-ccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHH-HcCCCceEEEEEeeCCCcEEEEEEEeeCC
Q 007922 139 ISEVLVRNKDGE-ELERKDLETEALTALKACRANSALTVREVQEDVHRII-DSGYFCSCMPVAVDTRDGIRLVFQVEPNQ 216 (585)
Q Consensus 139 I~~I~f~G~~N~-~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~-~~GYf~a~v~~~~~~~~~v~v~~~V~eG~ 216 (585)
|++|.|+| |. .++.++|.+.+. ....+..+-.-.+.+..++|. ..-|.... .+...-+ -+|.++|.|-.
T Consensus 1 v~~V~V~G--~~~~~s~~~I~~~~~----~~~~~~~~~~vd~~~i~~~l~~~~P~V~~a-~V~r~~P--~~l~I~V~Er~ 71 (220)
T 2vh1_A 1 MSKLVLTG--ERHYTRNDDIRQSIL----ALGEPGTFMTQDVNIIQTQIEQRLPWIKQV-SVRKQWP--DELKIHLVEYV 71 (220)
T ss_dssp -CEEEEES--CCSSCCHHHHHHHHH----TTSCTTCGGGSCHHHHHHHHHHHCTTEEEE-EEEEETT--TEEEEEEEECC
T ss_pred CcEEEEeC--CCccCCHHHHHHHHh----hccCCCCeEEECHHHHHHHHHhcCCCEEEE-EEEEeCC--CceEEEEEEec
Confidence 57899999 77 699999998542 123333322223444445566 66665432 2222222 35788999998
Q ss_pred ceEE----EEEE--cCCC-CChhHHHh-hhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEE
Q 007922 217 EFHG----LVCE--GANV-LPTKFVED-AFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMV 271 (585)
Q Consensus 217 ~~~~----I~i~--G~~~-~~~~~L~~-~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V 271 (585)
++-- .-+. |... ........ .+..-.|..-....+.+....+...+...+. ...|
T Consensus 72 pvA~~~~~~~id~~G~v~~~~~~~~~~~~lP~l~G~~~~~~~~l~~~~~l~~~l~~~~~~i~~i 135 (220)
T 2vh1_A 72 PIARWNDQHMVDAEGNTFSVPPERTSKQVLPMLYGPEGSANEVLQGYREMGQMLAKDRFTLKEA 135 (220)
T ss_dssp EEEEETTTEEEETTCCEEECCGGGTTTCCCCEEECSTTCHHHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred cEEEECCCcEECCCCeEEecCccccccCCCcEEECCCCCHHHHHHHHHHHHHHHHhcCceEEEE
Confidence 8641 1122 2110 01111111 1222223323344555566677777777665 4443
No 18
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=26.03 E-value=5.4e+02 Score=26.21 Aligned_cols=53 Identities=8% Similarity=-0.232 Sum_probs=31.0
Q ss_pred eEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEE
Q 007922 441 TSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQH 496 (585)
Q Consensus 441 ~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~ 496 (585)
+.+++.+.|.+.+... ......-.+..+..++++++|++++++.+.+++.|..
T Consensus 350 ~~lRaG~~yd~s~~~~---~~~~~~~P~~~~~~~s~G~gy~~~~~~~ld~ay~y~~ 402 (441)
T 3bry_A 350 WTFRGGFHYAQEAIPG---NMLLAVVPATPTTSLTGGVSYAIGKNDVIDFALSVAL 402 (441)
T ss_dssp EEEEEEEEEEEC------------------CEEEEEEEEEESSTTEEEEEEEEEEC
T ss_pred eEEEEeeecccCCCCc---ccccccccCcCceEEEeeeEEEcCCCeEEEEEEEEEe
Confidence 5778888777653210 0011112245778899999999998888888887764
No 19
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=24.31 E-value=58 Score=31.29 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=41.8
Q ss_pred ccceEEEEEEEeCCCC-ccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHcCCCceEEEEEeeCCCcEEEEEEEe
Q 007922 135 ERVLISEVLVRNKDGE-ELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVE 213 (585)
Q Consensus 135 ~~~~I~~I~f~G~~N~-~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~v~~~~~~~~~v~v~~~V~ 213 (585)
+...|++|.|+| |. .++.++|++.+. ....+..+-.-.+.+..++|.+.-|.+.. .+...-+ -+|.+.|+
T Consensus 24 p~f~v~~I~V~G--~~~~vs~~eI~~~~~----~~~~g~~~~~vd~~~i~~~l~~~PwV~~a-~V~r~~P--~~L~I~V~ 94 (255)
T 2vh2_A 24 SRLPLSKLVVTG--ERHYTTNDDIRQAIL----SLGAPGTFMTQDVNIIQQQIERLPWIQQA-SVRKQWP--DELKIHLV 94 (255)
T ss_dssp ---CCCEEEEES--CCSSCCHHHHHHHHT----TSCCSSTTTSCHHHHHHHHTSCCSSEEEE-EEEEETT--TEEEEEEE
T ss_pred CCceEeEEEEEC--CCcccCHHHHHHHHh----cccCCCccEEEcHHHHHHHHHcCCCeeEE-EEEEECC--CeEEEEEE
Confidence 456789999999 77 589999997541 13332333222333334445445554321 2222222 36788999
Q ss_pred eCCce
Q 007922 214 PNQEF 218 (585)
Q Consensus 214 eG~~~ 218 (585)
|-.++
T Consensus 95 Er~Pv 99 (255)
T 2vh2_A 95 EYVPF 99 (255)
T ss_dssp ECCCC
T ss_pred EeeeE
Confidence 99885
No 20
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=23.12 E-value=6.2e+02 Score=25.91 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=40.4
Q ss_pred eEEEEEEecccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEE
Q 007922 423 SIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (585)
Q Consensus 423 ~~~~~sy~~P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~ 497 (585)
-.++++|.. .+ ++.+++.+.|.+.+.... .....--..++..++++++|++++++++.+++.|...
T Consensus 327 ~~lG~eY~~----~~--~~~lRaG~~yd~spv~~~---~~~~~~P~~d~~~~s~G~~y~~~~~~~id~ay~y~~~ 392 (427)
T 3pgu_A 327 IALGTTYYY----DD--NWTFRTGIAFDDSPVPAQ---NRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHG 392 (427)
T ss_dssp EEEEEEEEC----SS--SEEEEEEEEEEECCCCGG---GCBTTBCCSCEEEEEEEEEEESSSSEEEEEEEEEEEE
T ss_pred EEEEEEEEc----CC--CEEEEEEEEEccCCCCcc---cccccccCCCCEEEEEeEEEEcCCCcEEEEEEEEEec
Confidence 345566642 12 267888888877642110 0011111334666888889999989998888888764
No 21
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=20.27 E-value=4.3e+02 Score=22.96 Aligned_cols=68 Identities=9% Similarity=0.062 Sum_probs=39.6
Q ss_pred EEEEEEEEEEEEEcCCCeEEEEEEEEEEEEeecCCCC----ceeeeccCCceeeeecCCCce-eeeeEeeEEc
Q 007922 469 IGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGN----PIIKDFYSSPLTASGKTNDEM-LIAKFESVYT 536 (585)
Q Consensus 469 ~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~d~~g~----~~~~~~~~~~l~ls~d~~D~~-l~Pt~~~~y~ 536 (585)
.+..++++.++|+++++|.+..++.|-...-....+. ....+..+..+..++.-.|+. ++++.++.+.
T Consensus 25 ~~~~G~~~~~gY~~~~~lgve~~~~y~~~~~~~~~~~~~~~~~~~~y~sl~~~p~y~i~d~~~lY~~~G~a~~ 97 (157)
T 3qra_A 25 KNPRGFNLKYRYEFNNDWGVIGSFAQTRRGFEESVDGFKLIDGDFKYYSVTAGPVFRINEYVSLYGLLGAGHG 97 (157)
T ss_dssp CCCEEEEEEEEEESSSSEEEEEEEEEEEECCCCCC----CCEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEE
T ss_pred cCCCEEEEEEeeecCCCeEEEEEEEEecCcccccccccccceeEEEEEEEeeeEEEEeCCceeeEEEEEEEEE
Confidence 3456888999999998888888887765332111110 011123344444456555654 6777766553
Done!