Query 007922
Match_columns 585
No_of_seqs 344 out of 2616
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 13:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007922.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007922hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t16a_ f.4.3.4 (A:) Long-chai 52.8 87 0.0064 28.9 17.8 54 441-497 339-392 (427)
2 d1x2ga1 d.224.1.3 (A:247-337) 44.9 15 0.0011 27.8 5.1 56 203-260 15-70 (91)
3 d1vqza1 d.224.1.3 (A:242-329) 44.2 3.5 0.00025 31.4 1.2 63 278-350 14-78 (88)
4 d1x2ga1 d.224.1.3 (A:247-337) 40.6 11 0.00078 28.7 3.6 55 278-342 14-70 (91)
5 d1qjpa_ f.4.1.1 (A:) Outer mem 38.7 90 0.0066 24.9 11.8 26 470-495 119-144 (171)
6 d1p4ta_ f.4.1.1 (A:) Outer mem 29.7 1.2E+02 0.009 23.8 12.7 27 470-496 106-132 (155)
7 d1vqza1 d.224.1.3 (A:242-329) 23.2 22 0.0016 26.6 2.6 54 203-258 15-68 (88)
8 d2fnaa1 a.4.5.11 (A:284-356) H 10.4 59 0.0043 23.4 1.9 36 313-348 21-56 (73)
9 d2gcxa1 b.34.1.2 (A:1-75) Ferr 8.8 88 0.0064 22.3 2.4 47 321-368 2-53 (75)
10 d1biaa1 a.4.5.1 (A:1-63) Bioti 8.3 2.3E+02 0.017 18.9 4.6 20 173-192 30-49 (63)
No 1
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=52.83 E-value=87 Score=28.86 Aligned_cols=54 Identities=13% Similarity=0.027 Sum_probs=35.5
Q ss_pred eEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEcCCCeEEEEEEEEEEE
Q 007922 441 TSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (585)
Q Consensus 441 ~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl~~~~~~slgl~~~~~ 497 (585)
+.+++.+.|...+... ...........+..+++++++++++++.+.+++.|...
T Consensus 339 l~lR~Gy~y~~~~~~~---~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~y~~~ 392 (427)
T d1t16a_ 339 WTFRTGIAFDDSPVPA---QNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHG 392 (427)
T ss_dssp EEEEEEEEEECCSSCT---TTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCc---ccccccccCCCCEEEEEEEEEEcCCCeEEEEEEEEEEc
Confidence 5777777776543211 11112223445678889999999999999998888753
No 2
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.93 E-value=15 Score=27.85 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=42.1
Q ss_pred CCcEEEEEEEeeCCceEEEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHH
Q 007922 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSING 260 (585)
Q Consensus 203 ~~~v~v~~~V~eG~~~~~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~ 260 (585)
.+.+.+.++|+.| .|+++.|.|+-. ....+..+-..-.|.+|+.+.+.+..+.+..
T Consensus 15 ~G~ve~~l~V~~G-~I~~~~i~gDfl-~~~~i~~le~~L~G~~y~~~~i~~~l~~~~~ 70 (91)
T d1x2ga1 15 WGGVELHFDVEKG-HITRAQVFTDSL-NPAPLEALAGRLQGCLYRADMLQQECEALLV 70 (91)
T ss_dssp TEEEEEEEEEETT-EEEEEEEEECCS-CCHHHHHHHHHHTTCBSSHHHHHHHHHHTGG
T ss_pred CceEEEEEEEeCC-EEEEEEEEcCCC-CcHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Confidence 4668999999888 478999999754 3455555544457899999999888877653
No 3
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=44.23 E-value=3.5 Score=31.44 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=42.9
Q ss_pred eCcE--EEEEEEEeEEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCccccc
Q 007922 278 SGGI--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVS 350 (585)
Q Consensus 278 ~dg~--V~l~V~eg~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~ 350 (585)
..|. +.++|..|.|.+|.|. |. -.....|...-..-.|-+|+.+.+.+.+..+.-..||.++.
T Consensus 14 ~~G~vev~l~V~~G~I~~iki~------GD----ff~~~~i~~le~~L~G~~y~~~~i~~~L~~~~~~~Yf~~i~ 78 (88)
T d1vqza1 14 TSGKVEVFANVTESKIQDIKIY------GD----FFGIEDVAAVEDVLRGVKYEREDVLKALKTIDITRYFAGIS 78 (88)
T ss_dssp TTEEEEEEEEEETTEEEEEEEE------ES----CCCSSCTHHHHHHHTTCBSSHHHHHHHHTTSCGGGTSTTCC
T ss_pred CCcEEEEEEEEeCCEEEEEEEE------ec----CCCchhHHHHHHHHcCCCCCHHHHHHHHHhCCHHHHhCCCC
Confidence 3464 6677778999999999 65 22233333333444689999999999887776556776543
No 4
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=40.58 E-value=11 Score=28.67 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=39.8
Q ss_pred eCcE--EEEEEEEeEEeeEEEEEccccCCCCCCCCCCHHHHHhhcCcCCCCccchHhHHHHHHHHHh
Q 007922 278 SGGI--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342 (585)
Q Consensus 278 ~dg~--V~l~V~eg~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~ 342 (585)
.-|. +.++|..|+|.++.|. |. -..+..|...-..-.|-+|+.+.+.+.+..+..
T Consensus 14 ~~G~ve~~l~V~~G~I~~~~i~------gD----fl~~~~i~~le~~L~G~~y~~~~i~~~l~~~~~ 70 (91)
T d1x2ga1 14 TWGGVELHFDVEKGHITRAQVF------TD----SLNPAPLEALAGRLQGCLYRADMLQQECEALLV 70 (91)
T ss_dssp TTEEEEEEEEEETTEEEEEEEE------EC----CSCCHHHHHHHHHHTTCBSSHHHHHHHHHHTGG
T ss_pred CCceEEEEEEEeCCEEEEEEEE------cC----CCCcHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Confidence 3454 6677788999999999 75 344455555544446999999999988876653
No 5
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=38.67 E-value=90 Score=24.93 Aligned_cols=26 Identities=8% Similarity=0.011 Sum_probs=20.9
Q ss_pred EEEEEEEEEEEEcCCCeEEEEEEEEE
Q 007922 470 GRVTAGMEFSRPIRPKWSGTVGLIFQ 495 (585)
Q Consensus 470 ~~~~~~~~l~~pl~~~~~~slgl~~~ 495 (585)
..+.+++++.+.++++|.+.+.++|.
T Consensus 119 ~~~~~G~G~~y~i~~~~~l~~ey~~~ 144 (171)
T d1qjpa_ 119 VSPVFAGGVEYAITPEIATRLEYQWT 144 (171)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEEeEEEEEeCCCEEEEEEEEEE
Confidence 34668888899999999998887765
No 6
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=29.67 E-value=1.2e+02 Score=23.81 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=22.9
Q ss_pred EEEEEEEEEEEEcCCCeEEEEEEEEEE
Q 007922 470 GRVTAGMEFSRPIRPKWSGTVGLIFQH 496 (585)
Q Consensus 470 ~~~~~~~~l~~pl~~~~~~slgl~~~~ 496 (585)
-.+.+++++.|.++++|.+.++++|..
T Consensus 106 ~~~~~g~G~~y~lt~n~~~~~eyry~~ 132 (155)
T d1p4ta_ 106 IGLGVLTGVSYAVTPNVDLDAGYRYNY 132 (155)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeeEEEEEEEEEecCCEEEEEEEEEEE
Confidence 467788899999999999999888764
No 7
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=23.24 E-value=22 Score=26.63 Aligned_cols=54 Identities=9% Similarity=0.021 Sum_probs=39.3
Q ss_pred CCcEEEEEEEeeCCceEEEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHH
Q 007922 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSI 258 (585)
Q Consensus 203 ~~~v~v~~~V~eG~~~~~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I 258 (585)
.+.+.+.++|+.| .++++.|.|+-. ....+.++-..-.|.+|+.+.+.++.+.+
T Consensus 15 ~G~vev~l~V~~G-~I~~iki~GDff-~~~~i~~le~~L~G~~y~~~~i~~~L~~~ 68 (88)
T d1vqza1 15 SGKVEVFANVTES-KIQDIKIYGDFF-GIEDVAAVEDVLRGVKYEREDVLKALKTI 68 (88)
T ss_dssp TEEEEEEEEEETT-EEEEEEEEESCC-CSSCTHHHHHHHTTCBSSHHHHHHHHTTS
T ss_pred CcEEEEEEEEeCC-EEEEEEEEecCC-CchhHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 4568999999776 588999999753 33445555555678899999888876554
No 8
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=10.42 E-value=59 Score=23.36 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=32.1
Q ss_pred HHHHHhhcCcCCCCccchHhHHHHHHHHHhCCCccc
Q 007922 313 PETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMED 348 (585)
Q Consensus 313 ~~~I~r~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~ 348 (585)
=..|++.+..++|...+...+...+++|.++|+.+.
T Consensus 21 Ws~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~iek 56 (73)
T d2fnaa1 21 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIK 56 (73)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCceee
Confidence 456888999999999999999999999999998754
No 9
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]}
Probab=8.76 E-value=88 Score=22.26 Aligned_cols=47 Identities=6% Similarity=0.030 Sum_probs=29.6
Q ss_pred CcCCCCccchHhH-----HHHHHHHHhCCCccccccccccCCCCCeEEEEEEE
Q 007922 321 TTKKGQVYSMLQG-----KRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNV 368 (585)
Q Consensus 321 ~l~~G~~ys~~~l-----~~~~~~L~~lg~F~~V~i~~~~~~~~g~vdl~i~v 368 (585)
.++||+.|....+ ....++|.++|+.....|+.... .+-.-++.|.|
T Consensus 2 ~l~pg~~~~I~g~~~~~~~~~~~RL~~mGl~pG~~V~v~~~-ap~g~P~~i~v 53 (75)
T d2gcxa1 2 QFTPDSAWKITGFSRDISPAYRQKLLSLGMLPGSSFHVVRV-APLGDPVHIET 53 (75)
T ss_dssp CCCTTSEEEEECCCSSCCHHHHHHHTTTTCCSSEEEEECCC-CSSCCEEEEEE
T ss_pred ccCCCCcEEEEEecccCCHHHHHHHHHcCCCCCCEEEEEEE-CCCCCCEEEEE
Confidence 4566666654322 34678999999999888877543 22223466666
No 10
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.34 E-value=2.3e+02 Score=18.87 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=15.9
Q ss_pred cccHHHHHHHHHHHHHcCCC
Q 007922 173 ALTVREVQEDVHRIIDSGYF 192 (585)
Q Consensus 173 ~~~~~~l~~d~~~L~~~GYf 192 (585)
-.+...+.++++.|.+.|+.
T Consensus 30 ~vS~~ti~r~i~~L~~~G~~ 49 (63)
T d1biaa1 30 GMSRAAINKHIQTLRDWGVD 49 (63)
T ss_dssp TSCHHHHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHHHHHHCCCc
Confidence 35667788999999999973
Done!