BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007923
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 268 IHRALDSDDVELVRMLL-KEAHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A ++ E+V++LL K A N D+ LHYA + LL G AD N +
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAK 99
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISK 368
+S G T LH AA +I+ LL+KGA P+ DGR L +++
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 311 ELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKR- 369
+LL+ G AD N +S G T LH AA +I+ LL+KGA P+ DGR L +
Sbjct: 22 DLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 80
Query: 370 ---------LTKAADYYIPTEEGKT 385
L+K AD +G+T
Sbjct: 81 GHKEIVKLLLSKGADPNAKDSDGRT 105
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 297 LHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDL 356
LH A Y + K LL ADVN + GY+ LH AA + I+ LL GA P+++
Sbjct: 315 LHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 357 TLDGRKALQISKRL 370
+ DG L I+KRL
Sbjct: 374 SSDGTTPLAIAKRL 387
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
Query: 224 SDIDIVTLDKTLPQHIVKQIIDLRVELSL---HRSESCGFPDKHTKRIHRALDSDDVELV 280
++ ++ T P HI + + L+L S++C K +H A V +
Sbjct: 104 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVA 162
Query: 281 RMLL-KEAHTNLDDAHAL---HYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAM 336
+LL ++AH N + L H AV + + LL G + GYT LH+AA
Sbjct: 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAK 221
Query: 337 RKEPKIIVSLLTKGARPSDLTLDGRKALQISKR 369
+ + ++ SLL G + ++ G L ++ +
Sbjct: 222 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 268 IHRALDSDDVELVRMLLK-EAHTNL---DDAHALHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A + E+ + LL+ +A N DD LH A A +LL A+ N
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA-ARIGHTNMVKLLLENNANPNLA 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKRLTK 372
+ G+T LH+AA + +++LL K A + +T G L ++ + K
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A ++ E+V++LL + A N D+ LH A + LL G AD N +
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNAK 99
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISK 368
+S G T LH+AA +++ LL++GA P+ DGR L +++
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAR 144
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 311 ELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKR- 369
+LL+ G ADVN +S G T LH+AA +++ LL++GA P+ DG+ L ++
Sbjct: 22 DLLENG-ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 80
Query: 370 ---------LTKAADYYIPTEEGKT 385
L++ AD +GKT
Sbjct: 81 GHKEVVKLLLSQGADPNAKDSDGKT 105
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 268 IHRALDSDDVELVRMLL-KEAHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A E+V++L+ K A N D+ LHYA + L+ G ADVN +
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVNAK 99
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISK 368
+S G T LH AA +I+ L++KGA + DGR L +++
Sbjct: 100 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 266 KRIHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVN 321
KR+ A ++ + + V+ L++ A N D+ LHYA + L+ G ADVN
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVN 64
Query: 322 HRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKR----------LT 371
++S G T LH AA +I+ L++KGA + DGR L + + ++
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 372 KAADYYIPTEEGKT 385
K AD +G+T
Sbjct: 125 KGADVNTSDSDGRT 138
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 268 IHRALDSDDVELVRMLL-KEAHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A ++ E+V++L+ K A N D+ LH+A + L+ G ADVN +
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAK 99
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISK 368
+S G T LH AA +++ L++KGA + DGR L +++
Sbjct: 100 DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR 144
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQ----------IS 367
ADVN +S G T LH AA +++ L++KGA + DGR L +
Sbjct: 28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK 87
Query: 368 KRLTKAADYYIPTEEGKT 385
++K AD +G+T
Sbjct: 88 LLISKGADVNAKDSDGRT 105
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDA---HALHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A +E+V +LLK A N D+ LH A + LL G ADVN
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG-ADVNAS 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
+S G+T LH+AA R +I+ LL GA + G+ A IS
Sbjct: 110 DSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGA 351
ADVN R+ G+T LH+AA +I+ LL GA
Sbjct: 38 ADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 292 DDAHALHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGA 351
D LH A A+ +LL G ADVN R+ G T LH+AA +I+ LL KGA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 352 RPSDLTLDGRKALQISKR 369
+ + DG ++K+
Sbjct: 67 DVNARSKDGNTPEHLAKK 84
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 268 IHRALDSDDVELVRMLL-KEAHTNL---DDAHALHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A + E V+ LL K A N D LH A A+ LL G ADVN R
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNAR 71
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGA 351
+ G T H+A +I+ L KGA
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 289 TNLDDAHALHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLT 348
T+ D ALH+A + + LL LG+ VN ++ G++ LH+AA +I+ +LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLV 94
Query: 349 KGARPSDLTLDG 360
KGA + + +G
Sbjct: 95 KGAHVNAVNQNG 106
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 289 TNLDDAHALHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLT 348
T+ D ALH+A + + LL LG+ VN ++ G++ LH+AA +I+ +LL
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLV 94
Query: 349 KGARPSDLTLDG 360
KGA + + +G
Sbjct: 95 KGAHVNAVNQNG 106
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLK-EAHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H +++ +E++ +LLK A N D LH A + LL G ADVN
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYG-ADVNAM 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
+ +GYT LH+AA +I+ LL GA + G+ A IS
Sbjct: 110 DYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A + +E+V +LLK A N D LH A A + LL G ADVN
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHG-ADVNAY 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
++ G+T LH+AA +I+ LL GA + G+ A IS
Sbjct: 110 DNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 32.7 bits (73), Expect = 0.56, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGA--RPSDLT 357
ADVN ++ GYT LH+AA +I+ LL GA SDLT
Sbjct: 38 ADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 270 RALDSDDVELVRMLLKEAHTNLDDAHA-LHYAVAYCDAKTTTELLDLGLADVNHRNSRGY 328
RA D+V ++ + + +D + LH A + + LL G ADVN + G
Sbjct: 23 RAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG-ADVNASDLTGI 81
Query: 329 TVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKR 369
T LH+AA +I+ LL GA + DG L ++ +
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAK 122
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A + +E+V +LLK A N D+ LH A AY E+L ADVN
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLA-AYDGHLEIVEVLLKHGADVNAY 101
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
+ G+T LH+AA+ + +I+ LL GA + G A IS
Sbjct: 102 DRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDIS 145
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGA 351
ADVN + G T LH+AA + +I+ LL GA
Sbjct: 30 ADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDD---AHALHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A +E+V +LLK A N D + LH A + + LL G ADVN +
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG-ADVNAK 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
+ G T LH+AA R +I+ LL GA + G+ A IS
Sbjct: 110 DDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDD---AHALHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A + +E+V +LLK A N D A LH A + LL G ADVN +
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHG-ADVNAK 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
+ G+T LH+AA +I+ LL GA + G+ A IS
Sbjct: 110 DYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDA---HALHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A +E+V +LLK A N DD+ LH A + LL G ADVN
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNG-ADVNAN 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
+ G+T LH+AA +I+ LL GA + G+ A IS
Sbjct: 110 DHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 270 RALDSDDVELVRMLLKEAHTNLDDA---HALHYAVAYCDAKTTTELLDLGLADVNHRNSR 326
RA D+V + ++ A N D LH A + + LL G ADVN +S
Sbjct: 23 RAGQDDEVRI--LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG-ADVNADDSL 79
Query: 327 GYTVLHVAAMRKEPKIIVSLLTKGA 351
G T LH+AA R +++ LL GA
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGA 104
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 265 TKRIHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADV 320
T +H A S +E+V +LLK A + D LH A + + LL G ADV
Sbjct: 48 TTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNG-ADV 106
Query: 321 NHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
N +S G T LH+AA +I+ LL GA + G+ A IS
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 270 RALDSDDVELVRMLLKEAHTNLDD---AHALHYAVAYCDAKTTTELLDLGLADVNHRNSR 326
RA D+V + ++ A N D LH A AY E+L ADV+ +
Sbjct: 23 RAGQDDEVRI--LMANGADVNAADNTGTTPLHLA-AYSGHLEIVEVLLKHGADVDASDVF 79
Query: 327 GYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKR 369
GYT LH+AA +I+ LL GA + + DG L ++ +
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAK 122
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 262 DKHTKRIHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGL 317
D+ + +H A E+V +LLK A N D LH A + LL G
Sbjct: 45 DQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYG- 103
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
ADVN +++ G T LH+AA R +I+ LL GA + G+ A IS
Sbjct: 104 ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
ADVN + +G T LH+AA P+I+ LL GA + DG L ++
Sbjct: 38 ADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 270 RALDSDDVELVRMLLKEAHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHRNSR 326
RA D+V + ++ A N D LH A + LL G ADVN R++
Sbjct: 23 RAGQDDEVRI--LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG-ADVNARDTD 79
Query: 327 GYTVLHVAAMRKEPKIIVSLLTKGA 351
G+T LH+AA +I+ LL GA
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGA 104
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 274 SDDVELVRMLLKE----AHTNLDDAHALHYAVAYCDAKTTTELLDLGLADVNHRNSRGYT 329
+ ++E+V+ +KE + N + ALH A+ + L+ G A+VN +S G+T
Sbjct: 31 TGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAG-ANVNSPDSHGWT 89
Query: 330 VLHVAAMRKEPKIIVSLLTKGARPSDLTL-DGRKALQ 365
LH AA + I ++L+ GA TL DG A +
Sbjct: 90 PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFE 126
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDAHA----LHYAVAYCDAKTTTELLDLGLADVNH 322
+H A + +E+V +LLK A N D HA L A + + LL G ADVN
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIVEVLLKNG-ADVNA 108
Query: 323 RNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
+ G+T LH+AAM +I+ LL GA + G+ A IS
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
ADVN ++ G+T LH+AA +I+ LL GA + + G L+++
Sbjct: 38 ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A +E+V +LLK A N D LH A + LL G ADVN +
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAK 97
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGA----------RPSDLTLDGRKALQISKRLTKA 373
+ GYT LH+AA +I+ LL GA P DL +D I++ L KA
Sbjct: 98 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNE-DIAEVLQKA 156
Query: 374 A 374
A
Sbjct: 157 A 157
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKR 369
ADVN ++ GYT LH+AA +I+ LL GA + DG L ++ R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A + +E+V++LL+ A N D + LH A + LL+ G ADVN +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK 64
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKR 369
+ G T LH+AA +++ LL GA + +GR L ++ R
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 236 PQHIVKQIIDLRV-ELSLHRSESCGFPDKHTKR-IHRALDSDDVELVRMLLKE-AHTNLD 292
P H+ + L V +L L DK+ + +H A + +E+V++LL+ A N
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 293 DAHA---LHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTK 349
D + LH A + LL+ G ADVN ++ G T LH+AA +++ LL
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Query: 350 GA 351
GA
Sbjct: 124 GA 125
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A +E+V +LLK A N D LH A + LL G ADVN +
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAK 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
+ GYT LH+AA +I+ LL GA + G+ A IS
Sbjct: 110 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 153
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 297 LHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDL 356
LH A + LL G ADVN ++ GYT LH+AA +I+ LL GA +
Sbjct: 51 LHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 109
Query: 357 TLDGRKALQISKR 369
DG L ++ R
Sbjct: 110 DKDGYTPLHLAAR 122
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKR 369
ADVN ++ GYT LH+AA +I+ LL GA + DG L ++ R
Sbjct: 38 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 268 IHRALDSDDVELVRMLLKEAH--TNLDDA--HALHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A + E+V LL+ + DDA LH A + + LL G A VN
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG-AQVNAV 103
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARP 353
N G T LH AA + +I V LL GA P
Sbjct: 104 NQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 268 IHRALDSDDVELVRMLLKEAH--TNLDDA--HALHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A + E+V LL+ + DDA LH A + + LL G A VN
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG-AQVNAV 102
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARP 353
N G T LH AA + +I V LL GA P
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 73 GREVPVHRCILSSRSGFFKNVFAGT-GKQRGPKFELKELVRDYEVGFDPLVAVLAYLYCG 131
GRE HR +L++ + +F + +G + R + E+++ + D + AV+ Y+Y G
Sbjct: 62 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 121
Query: 132 KVR 134
++R
Sbjct: 122 RIR 124
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 301 VAYCDAKTTTELLDLGLADVNHRNSRG-YTVLHVAAMRKEPKIIVSLLTKGARPSDLTLD 359
VA + LL AD++HR+ RG T LH+AA P+++ +L+ GA
Sbjct: 83 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 142
Query: 360 GRKALQISKRLTKAADYYIPTEEGKTTPKDRLCIEILE 397
G AL++++ + K P + G+ +++ I +LE
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRRIGLEKV-INVLE 179
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A +E+V +LLK A N D LH A + LL G ADVN +
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAK 97
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGA 351
+ GYT LH+AA +I+ LL GA
Sbjct: 98 DKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 297 LHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDL 356
LH A + LL G ADVN ++ GYT LH+AA +I+ LL GA +
Sbjct: 39 LHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 97
Query: 357 TLDGRKALQISKR 369
DG L ++ R
Sbjct: 98 DKDGYTPLHLAAR 110
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKR 369
ADVN ++ GYT LH+AA +I+ LL GA + DG L ++ R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A +E+V +LLK A N D LH A Y + LL G ADVN
Sbjct: 51 LHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNG-ADVNAT 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
++ G+T LH+AA +I+ LL GA + G+ A IS
Sbjct: 110 DTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGA 351
ADVN + G T LH+AA++ +I+ LL GA
Sbjct: 38 ADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 292 DDAHALHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGA 351
D LH A + LL G ADVN ++ G T LH+AA+R +I+ LL GA
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYG-ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 352 RPSDLTLDGRKALQIS 367
+ G+ A IS
Sbjct: 105 DVNAQDKFGKTAFDIS 120
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDD---AHALHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A +E+V +LLK A N D + LH A + LL G ADVN
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHG-ADVNAV 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
++ G T LH+AA+ +I+ LL GA + G+ A IS
Sbjct: 110 DTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
ADVN ++ G T LH+AA +I+ LL GA + + + G L ++
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLA 87
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDD---AHALHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A +E+V +LLK A N D + LH A + LL G ADVN
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHG-ADVNAV 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
++ G T LH+AA+ +I+ LL GA + G+ A IS
Sbjct: 110 DTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
ADVN ++ G T LH+AA +I+ LL GA + + + G L ++
Sbjct: 38 ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLA 87
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
ADVN ++ GYT LH+AA +I+ LL GA + G+ A IS
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 75
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 318 ADVNHRNSRG-YTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKRLTKAADY 376
AD++HR+ RG T LH+AA P+++ +L+ GA G AL++++ + K
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPK 160
Query: 377 YIPTEEGKTTPKDRLCIEILE 397
P + G+ +++ I +LE
Sbjct: 161 GNPMQFGRRIGLEKV-INVLE 180
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 73 GREVPVHRCILSSRSGFFKNVFAGT-GKQRGPKFELKELVRDYEVGFDPLVAVLAYLYCG 131
GRE HR +L++ + +F + +G + R + E ++ + D + AV+ Y Y G
Sbjct: 44 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTG 103
Query: 132 KVR 134
++R
Sbjct: 104 RIR 106
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 296 ALHYAVA--YCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARP 353
ALH AVA + K ELL A+VN +N T LHVAA R ++ L GA+
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273
Query: 354 SDLTLDGRKALQ 365
+ L G+ AL
Sbjct: 274 NALDSLGQTALH 285
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 296 ALHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAM-----RKEPKIIVSLLTKG 350
ALHY+V++ + +LLD G+ V+ +N GY+ + + A+ + + + ++ L G
Sbjct: 114 ALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG 173
Query: 351 ARPSDLTLDGRKALQIS 367
+ + G+ AL ++
Sbjct: 174 NINAKASQAGQTALMLA 190
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 68 IVLSTGREVPVHRCILSSRSGFFKNVF 94
++L GRE P HR +L++ S +FK +F
Sbjct: 29 VILVEGREFPTHRSVLAACSQYFKKLF 55
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 297 LHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDL 356
LH A Y + LL G ADVN ++ G T LH+AA+ +I+ LL GA +
Sbjct: 51 LHLAADYDHLEIVEVLLKHG-ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQ 109
Query: 357 TLDGRKALQIS 367
G+ A IS
Sbjct: 110 DKFGKTAFDIS 120
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A + +E+V++LL+ A N D + LH A + LL+ G ADVN +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK 64
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGA 351
+ G T LH+AA +++ LL GA
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 297 LHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDL 356
LH A + LL+ G ADVN ++ G T LH+AA +++ LL GA +
Sbjct: 6 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 357 TLDGRKALQISKR 369
+GR L ++ R
Sbjct: 65 DKNGRTPLHLAAR 77
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 68 IVLSTGREVPVHRCILSSRSGFFKNVF 94
++L GRE P HR +L++ S +FK +F
Sbjct: 39 VILVEGREFPTHRSVLAACSQYFKKLF 65
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 290 NLDDAHALHYAVAYCDAKTTTELLDLGLADVNHRNSR-GYTVLHVAAMRKEPKIIVSLLT 348
N D LH AV + DA+ L D G AD+N G T LH+A + ++ LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 349 KGARPSDLTLDGRKAL 364
GA P+ GR L
Sbjct: 214 AGADPTARMYGGRTPL 229
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 290 NLDDAHALHYAVAYCDAKTTTELLDLGLADVNHRNSR-GYTVLHVAAMRKEPKIIVSLLT 348
N D LH AV + DA+ L D G AD+N G T LH+A + ++ LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 349 KGARPSDLTLDGRKAL 364
GA P+ GR L
Sbjct: 214 AGADPTARMYGGRTPL 229
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 319 DVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGAR 352
++N +N G T LH AA + I+ LL KGAR
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 270 RALDSDDVELVRMLLKEAHTN-LDDAHA--LHYAVAYCDAKTTTELLDLGLADVNHRNSR 326
RA D+V + ++ A N +DDA LH A + LL G ADVN R+
Sbjct: 23 RAGQDDEVRI--LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNARDIW 79
Query: 327 GYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
G T LH+AA +I+ LL GA + G+ A IS
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 270 RALDSDDVELVRMLLKEAHTNLDDAHAL---HYAVAYCDAKTTTELLDLGLADVNHRNSR 326
RA D+V + ++ A N D + L + A A+ + LL G ADVN ++
Sbjct: 23 RAGQDDEVRI--LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAI 79
Query: 327 GYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
G+T LH+AA +I LL GA + G+ A IS
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 270 RALDSDDVELVRMLLKEAHTN-LDDAHA--LHYAVAYCDAKTTTELLDLGLADVNHRNSR 326
RA D+V + ++ A N +DDA LH A + LL G ADVN +S
Sbjct: 23 RAGQDDEVRI--LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDSW 79
Query: 327 GYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
G T LH+AA +I+ LL GA + G+ A IS
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A S +E+V +LLK A + D + LH A + LL G ADVN
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYG-ADVNAF 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
+ G T LH+AA +I+ LL GA + G+ A IS
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
ADVN + G T LH+AA R +I+ LL GA + + GR L ++
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLA 87
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 270 RALDSDDVELVRMLLKEAHTN-LDDAHA--LHYAVAYCDAKTTTELLDLGLADVNHRNSR 326
RA D+V + ++ A N +DDA LH A + LL G ADVN +
Sbjct: 23 RAGQDDEVRI--LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDIW 79
Query: 327 GYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
G T LH+AA +I+ LL GA + G+ A IS
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 274 SDDVELVRMLLKEA---HTNLDDAHALHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTV 330
D E++R+L + A + N+D ALH A + L++ G A++N ++ G+
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG-ANINQPDNEGWIP 109
Query: 331 LHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQI 366
LH AA I L+++GA + +G L I
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 263 KHTKRIHRALDSD-DVELVRMLLKEAHTNLDDAHALHYAVAYCDAKTTTELLDLGLADVN 321
K +++ R + S+ D+E + K+ DD A + D + LL+ G AD+N
Sbjct: 9 KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG-ADIN 67
Query: 322 HRNSRGYTVLHVAAMRKEPKIIVSLLTKGA 351
+ N G T LH A + ++ L+ GA
Sbjct: 68 YANVDGLTALHQACIDDNVDMVKFLVENGA 97
>pdb|2VT2|A Chain A, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
pdb|2VT2|B Chain B, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
pdb|2VT3|A Chain A, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
pdb|2VT3|B Chain B, Structure And Functional Properties Of The Bacillus
Subtilis Transcriptional Repressor Rex
Length = 215
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 46/212 (21%)
Query: 66 AKIVLSTGREVPVHRCILSSRSGFFKNVFAGTGKQRGPKFELKELVRDYEVGFDPLVAVL 125
+KI +T + +P++ F KN+ A +GKQR EL + V+ D
Sbjct: 6 SKIPQATAKRLPLYYR-------FLKNLHA-SGKQRVSSAELSDAVK-----VDSATIRR 52
Query: 126 AYLYCGKVRPFPIGVCV---------CVDDDACSHVACRPAVDFMVEVLY---------- 166
+ Y G + G V +D D + V + L+
Sbjct: 53 DFSYFGALGKKGYGYNVDYLLSFFRKTLDQDEMTDVILIGVGNLGTAFLHYNFTKNNNTK 112
Query: 167 VSFAFQVPEL--------VALYQRHLLDILDKVVADDILVVLSVAHMCGKACEKLLERCI 218
+S AF + E V +Y LD L++ V D+ + +L+V + A + + +R +
Sbjct: 113 ISMAFDINESKIGTEVGGVPVYN---LDDLEQHVKDESVAILTVPAV---AAQSITDRLV 166
Query: 219 EITVKSDIDIVTLDKTLPQHIVKQIIDLRVEL 250
+ +K ++ +P+HI IDL VEL
Sbjct: 167 ALGIKGILNFTPARLNVPEHIRIHHIDLAVEL 198
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 289 TNLDDAHALHYAVAYCDAKTTTELLDLGLADVNHRNS-RGYTVLHVAAMRKEPKIIVSLL 347
TN + LH A + L+ LG ADVN + G T LH+A + P ++ LL
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Query: 348 TKGARPSDLTLDGRKALQIS 367
GA + +T G Q++
Sbjct: 172 KCGADVNRVTYQGYSPYQLT 191
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 297 LHYAVAYCDAKTTTELL---DLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARP 353
LH A+ + + T E++ LA +N +N+ T LH+A + +P+I +LL G P
Sbjct: 12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71
Query: 354 SDLTLDGRKALQIS 367
G L ++
Sbjct: 72 ELRDFRGNTPLHLA 85
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 289 TNLDDAHALHYAVAYCDAKTTTELLDLGLADVNHRNS-RGYTVLHVAAMRKEPKIIVSLL 347
TN + LH A + L+ LG ADVN + G T LH+A + P ++ LL
Sbjct: 110 TNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
Query: 348 TKGARPSDLTLDGRKALQIS 367
GA + +T G Q++
Sbjct: 169 KCGADVNRVTYQGYSPYQLT 188
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 297 LHYAVAYCDAKTTTELL---DLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARP 353
LH A+ + + T E++ LA +N +N+ T LH+A + +P+I +LL G P
Sbjct: 9 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 68
Query: 354 SDLTLDGRKALQIS 367
G L ++
Sbjct: 69 ELRDFRGNTPLHLA 82
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 270 RALDSDDVELVRMLLKEAHTNLDDA---HALHYAVAYCDAKTTTELLDLGLADVNHRNSR 326
RA D+V + ++ A N +D LH A A D E+L ADVN ++
Sbjct: 23 RAGQDDEVRI--LMANGADVNAEDKVGLTPLHLA-AMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 327 GYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
G T LH+ AM +I+ LL GA + G+ A IS
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 270 RALDSDDVELVRMLLKEAHTNLDDAHA-LHYAVAYCDAKTTTELLDLGLADVNHRNSRGY 328
RA D+V ++ + + N H LH A + LL G ADVN + G
Sbjct: 23 RAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG-ADVNATGNTGR 81
Query: 329 TVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
T LH+AA +I+ LL GA + G+ A IS
Sbjct: 82 TPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 318 ADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQISKR 369
ADVN ++ G T LH+AA +I+ LL GA + L G L ++ +
Sbjct: 38 ADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAK 89
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 280 VRMLLKE-AHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAA 335
VR+L+ A N +D + LH A + LL G ADVN + G T LH+AA
Sbjct: 30 VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG-ADVNALDFSGSTPLHLAA 88
Query: 336 MRKEPKIIVSLLTKGA 351
R +I+ LL GA
Sbjct: 89 KRGHLEIVEVLLKYGA 104
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 268 IHRALDSDDVELVRMLLKE-AHTNLDD---AHALHYAVAYCDAKTTTELLDLGLADVNHR 323
+H A +E+V +LLK A N D + LH A + LL G ADVN
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYG-ADVNAD 109
Query: 324 NSRGYTVLHVAAMRKEPKIIVSLLTKGARPSDLTLDGRKALQIS 367
++ G T LH+AA +I+ LL GA + G+ A IS
Sbjct: 110 DTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 24/118 (20%)
Query: 277 VELVRMLL-KEAHTNLDDAH---ALHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLH 332
V+LV++LL K + N+ D LH+A A+ E+L D++ N G + LH
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWA-AFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182
Query: 333 VAAMRKEPKIIVSLLTKGARPSDLTLDGRK----------------ALQISKRLTKAA 374
+AA +V L+ R SD+TL ++ ALQ+SK L +A
Sbjct: 183 IAARENRYDCVVLFLS---RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237
>pdb|1OGC|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGE|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGF|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
Length = 131
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 48 SKTLETIFESQDFDYFT---------DAKIVLSTGREVPVHRCILSS 85
+K LE +F Q+ +Y + DAK V+ TG P CIL +
Sbjct: 81 AKFLENLFSEQEIEYLSHEEFKLLTKDAKAVIRTGEFTPYANCILQA 127
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 270 RALDSDDVELVRMLLKEAHTNLDDAHA---LHYAVAYCDAKTTTELLDLGLADVNHRNSR 326
RA D+V + ++ A N D + LH A A + LL G ADVN ++
Sbjct: 11 RAGQDDEVRI--LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNG-ADVNAVDTN 67
Query: 327 GYTVLHVAAMRKEPKIIVSLLTKGA 351
G T LH+AA +I+ LL GA
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGA 92
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 289 TNLDDAHALHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLT 348
T+ D + LH A + A LL G A+ RN+ LH+A + +++ LL
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 349 KGARPSDLTLDGRKAL 364
A+P+ L G L
Sbjct: 141 SNAKPNKKDLSGNTPL 156
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 12/101 (11%)
Query: 263 KHTKRIHRALDSDDVELVRMLLKEAHTNLDDA------------HALHYAVAYCDAKTTT 310
+ +++ RA+ D+E+VR LL+ +L+DA H L A+
Sbjct: 10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRL 69
Query: 311 ELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGA 351
+ VN + G + LHVAA+ +I LL GA
Sbjct: 70 AKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGA 110
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 291 LDDAHALHYAVAYCDAKTTTELLDLGLADVNHRNSRG-YTVLHVAAMRKEPKIIVSLLTK 349
++D H L AV D +LL+ G A+VN + G +T LH A I+ LL
Sbjct: 23 VEDNHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 81
Query: 350 GARP 353
GA P
Sbjct: 82 GADP 85
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 291 LDDAHALHYAVAYCDAKTTTELLDLGLADVNHRNSRG-YTVLHVAAMRKEPKIIVSLLTK 349
++D H L AV D +LL+ G A+VN + G +T LH A I+ LL
Sbjct: 3 VEDNHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 350 GARP 353
GA P
Sbjct: 62 GADP 65
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 233 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 279
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 233 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 279
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 233 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 279
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 231 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 277
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 231 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 277
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 234 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 280
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 231 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 277
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 234 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 280
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 233 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 279
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 231 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 277
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 215 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 261
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 208 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 254
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 211 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 257
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 230 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 276
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 230 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 276
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 209 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 255
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 238 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 284
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 481 PFKMQEEHLNRMKALCRTVELGKRFFPRCSEVLNKIMDADDLNQLAC 527
PF+ E+L K + + ++FFP+ +++ K++ D +L C
Sbjct: 210 PFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGC 256
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 296 ALHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGA---- 351
ALH AV + L+ G+ +VN +S G+T LH AA ++ L+ GA
Sbjct: 73 ALHNAVCAGHTEIVKFLVQFGV-NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 352 -RPSDLTLDGRKALQISKRLTKAADYYIPTEE 382
SD+ K ++ + T+ + + +E
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 296 ALHYAVAYCDAKTTTELLDLGLADVNHRNSRGYTVLHVAAMRKEPKIIVSLLTKGA---- 351
ALH AV + L+ G+ +VN +S G+T LH AA ++ L+ GA
Sbjct: 73 ALHNAVCAGHTEIVKFLVQFGV-NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 352 -RPSDLTLDGRKALQISKRLTKAADYYIPTEE 382
SD+ K ++ + T+ + + +E
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,200,269
Number of Sequences: 62578
Number of extensions: 655214
Number of successful extensions: 1672
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 151
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)