STRING 9.05 
  AT5G48960 protein (Arabidopsis thaliana) - STRING network view
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
AT5G48960
5' nucleotidase family protein; 5' nucleotidase family protein; FUNCTIONS IN- 5'-nucleotidase activity; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast, chloroplast stroma; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (InterPro-IPR008380); BEST Arabidopsis thaliana protein match is- 5' nucleotidase family protein (TAIR-AT1G75210.1); Has 508 Blast hits to 508 proteins in 82 species- Archae - 0; Bacteria - 35; Metazoa - 384; Fungi - 0; Plants - 56; Viruses - 0; [...] (642 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT3G08740
elongation factor P (EF-P) family protein; elongation factor P (EF-P) family protein; FUNCTIONS [...] (236 aa)
       0.782
AT4G01310
ribosomal protein L5 family protein; ribosomal protein L5 family protein; FUNCTIONS IN- structu [...] (262 aa)
       0.780
AT1G11430
plastid developmental protein DAG, putative; plastid developmental protein DAG, putative; LOCAT [...] (232 aa)
      0.757
AT1G21440
mutase family protein; mutase family protein; FUNCTIONS IN- isocitrate lyase activity, catalyti [...] (336 aa)
       0.744
AT1G35420
dienelactone hydrolase family protein; dienelactone hydrolase family protein; FUNCTIONS IN- hyd [...] (310 aa)
       0.742
CHL-CPN10
CHL-CPN10 (CHLOROPLAST CHAPERONIN 10); chaperone binding; Encodes a chloroplast-localized chape [...] (139 aa)
       0.679
AT1G36390
co-chaperone grpE family protein; co-chaperone grpE family protein; FUNCTIONS IN- protein bindi [...] (279 aa)
       0.679
AT5G55220
trigger factor type chaperone family protein; trigger factor type chaperone family protein; FUN [...] (547 aa)
       0.659
AT5G13650
elongation factor family protein; elongation factor family protein; FUNCTIONS IN- GTP binding, [...] (676 aa)
       0.659
AT1G77060
mutase family protein; mutase family protein; FUNCTIONS IN- catalytic activity; INVOLVED IN- me [...] (339 aa)
       0.659
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes

 Server load: very high (>100%)
Permalink