BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007924
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 192 bits (487), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 127/446 (28%), Positives = 220/446 (49%), Gaps = 27/446 (6%)
Query: 143 IFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNL-RNMGFP--VEGLAFDP 199
+F +R +N+R I IG DMD+TL+ YN +E YD L + +P ++ F+
Sbjct: 6 VFVNRIINMRKIKLIGLDMDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFNF 65
Query: 200 DLVIRGLVIDKEKGNLVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFL 259
D IRGLVID + GN++K R+G ++ + HGT +S ++Y VDL + + +
Sbjct: 66 DDAIRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYVDL-GDPNYMAI 124
Query: 260 NTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSK 319
+T FS++ + Y Q+V+ D P+ P Y+ + + V + + H +G LK+ I+
Sbjct: 125 DTSFSIAFCILYGQLVDLKD---TNPDKMP-SYQAIAQDVQYCVDKVHSDGTLKNIIIKN 180
Query: 320 PELFVXXXXXXXXXXXXQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNM 379
+ +V GKK+ ++TNS+Y Y+ ++ ++ + FL W+ LF
Sbjct: 181 LKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEF 240
Query: 380 VIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILY 439
VI A KP FF + V G M G+Y GG+A+ L + GDEILY
Sbjct: 241 VITLANKPRFFYDNLRFLSVNPENGTMTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILY 300
Query: 440 VGDHIYTDVSQSKVHLRWRTALICRELEEEYNALINSRGQRARLVELINQKEVVGDXXXX 499
+GDHIY D+ + K WRTAL+ EL EE + I + ++ E + K+ +
Sbjct: 301 IGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRALPIEKKIGEAMAIKKELEQKYV- 359
Query: 500 XXXXXXXXXXGHPAQTLAATNMDD--QELTESMQKLLVVMQRLDQKIAPMLESDGELFNK 557
L ++D+ Q+ + + L + + +D +I+ +L+ +N
Sbjct: 360 ---------------DLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSFYNP 404
Query: 558 RWGFLSRAGLWDKSHLMRQIEKYAAL 583
+W + RAG ++S+ Q++++A +
Sbjct: 405 KWERVFRAGA-EESYFAYQVDRFACI 429
>pdb|2BDE|A Chain A, Crystal Structure Of The Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) From Legionella Pneumophila,
Northeast Structural Genomics Target Lgr1
Length = 470
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/452 (28%), Positives = 218/452 (48%), Gaps = 39/452 (8%)
Query: 143 IFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNL-RNMGFP--VEGLAFDP 199
+F +R +N R I IG D D+TL+ YN +E YD L + +P ++ F+
Sbjct: 6 VFVNRIINXRKIKLIGLDXDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFNF 65
Query: 200 DLVIRGLVIDKEKGNLVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFL 259
D IRGLVID + GN++K R+G ++ + HGT +S ++Y VDL + + +
Sbjct: 66 DDAIRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYVDL-GDPNYXAI 124
Query: 260 NTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSK 319
+T FS++ + Y Q+V+ D P+ P Y+ + + V + + H +G LK+ I+
Sbjct: 125 DTSFSIAFCILYGQLVDLKD---TNPDKXP-SYQAIAQDVQYCVDKVHSDGTLKNIIIKN 180
Query: 320 PELFVXXXXXXXXXXXXQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNM 379
+ +V GKK+ ++TNS+Y Y+ ++ ++ + FL W+ LF
Sbjct: 181 LKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEF 240
Query: 380 VIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILY 439
VI A KP FF + V G G+Y GG+A+ L + GDEILY
Sbjct: 241 VITLANKPRFFYDNLRFLSVNPENGTXTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILY 300
Query: 440 VGDHIYTDVSQSKVHLRWRTALICRELEEEYNALINSR------GQRARLVELINQKEVV 493
+GDHIY D+ + K WRTAL+ EL EE + I + G+ + + + QK V
Sbjct: 301 IGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRALPIEKKIGEAXAIKKELEQKYV- 359
Query: 494 GDXXXXXXXXXXXXXXGHPAQTLAATNMDD--QELTESMQKLLVVMQRLDQKIAPMLESD 551
L ++D+ Q+ + + L + + +D +I+ +L+
Sbjct: 360 ---------------------DLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQ 398
Query: 552 GELFNKRWGFLSRAGLWDKSHLMRQIEKYAAL 583
+N +W + RAG ++S+ Q++++A +
Sbjct: 399 NSFYNPKWERVFRAGA-EESYFAYQVDRFACI 429
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 180/382 (47%), Gaps = 34/382 (8%)
Query: 110 IEEVARMEAQEAEHLLNDFGIPSPSSARNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYN 169
++ A M A +H L + R + +F +R+L + I G+DMDYTL Y
Sbjct: 28 LQNAADMPANMDKHALKKY-------RREAYHRVFVNRSLAMEKIKCFGFDMDYTLAVYK 80
Query: 170 VMAWEGRAYDYCMVNLRNMGFPVEGLAF--DPDLVIRGLVIDKEKGNLVKADRFGYVKRA 227
+E ++ + L ++G+P E L+F D RGLV D GNL+K D +G +
Sbjct: 81 SPEYESLGFELTVERLVSIGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLVC 140
Query: 228 MHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEA------VAYMQMVNRLDEG 281
HG + E Y + + R+ LNTLF++ E V + R
Sbjct: 141 AHGFNFIRGPETREQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSC 200
Query: 282 AIGPELGPL--DYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFVXXXXXXXXXXXXQKE 339
G + G L Y+ +++ V A+ H +G LK + + E +V KE
Sbjct: 201 ETGFKDGDLFMSYRSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKE 260
Query: 340 AGKKLLLITNSDYHYTDKMMQHSFNRFLPN-------DMGWRDLFNMVIVSARKPEFFQM 392
GK + L TNSDY YTDK+M + F+ P+ W+ F++++V ARKP FF
Sbjct: 261 VGK-VFLATNSDYKYTDKIMTYLFD--FPHGPKPGSSHRPWQSYFDLILVDARKPLFFGE 317
Query: 393 SHPLYEVVTGEGLMRPCFKARTGGL-----YSGGSAQMIENSLNIHGDEILYVGDHIYTD 447
L +V T G ++ TG L YSGGS+ I + L G +ILY+GDHI+ D
Sbjct: 318 GTVLRQVDTKTGKLK--IGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGD 375
Query: 448 VSQSKVHLRWRTALICRELEEE 469
+ +SK WRT L+ EL +E
Sbjct: 376 ILKSKKRQGWRTFLVIPELAQE 397
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 180/382 (47%), Gaps = 34/382 (8%)
Query: 110 IEEVARMEAQEAEHLLNDFGIPSPSSARNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYN 169
++ A M A +H L + R + +F +R+L + I G++MDYTL Y
Sbjct: 27 LQNAADMPANMDKHALKKY-------RREAYHRVFVNRSLAMEKIKCFGFNMDYTLAVYK 79
Query: 170 VMAWEGRAYDYCMVNLRNMGFPVEGLAF--DPDLVIRGLVIDKEKGNLVKADRFGYVKRA 227
+E ++ + L ++G+P E L+F D RGLV D GNL+K D +G +
Sbjct: 80 SPEYESLGFELTVERLVSIGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLVC 139
Query: 228 MHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEA------VAYMQMVNRLDEG 281
HG + E Y + + R+ LNTLF++ E V + R
Sbjct: 140 AHGFNFIRGPETREQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSC 199
Query: 282 AIGPELGPL--DYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFVXXXXXXXXXXXXQKE 339
G + G L Y+ +++ V A+ H +G LK + + E +V KE
Sbjct: 200 ETGFKDGDLFMSYRSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKE 259
Query: 340 AGKKLLLITNSDYHYTDKMMQHSFNRFLPN-------DMGWRDLFNMVIVSARKPEFFQM 392
GK + L TNSDY YTDK+M + F+ P+ W+ F++++V ARKP FF
Sbjct: 260 VGK-VFLATNSDYKYTDKIMTYLFD--FPHGPKPGSSHRPWQSYFDLILVDARKPLFFGE 316
Query: 393 SHPLYEVVTGEGLMRPCFKARTGGL-----YSGGSAQMIENSLNIHGDEILYVGDHIYTD 447
L +V T G ++ TG L YSGGS+ I + L G +ILY+GDHI+ D
Sbjct: 317 GTVLRQVDTKTGKLK--IGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGD 374
Query: 448 VSQSKVHLRWRTALICRELEEE 469
+ +SK WRT L+ EL +E
Sbjct: 375 ILKSKKRQGWRTFLVIPELAQE 396
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 180/382 (47%), Gaps = 34/382 (8%)
Query: 110 IEEVARMEAQEAEHLLNDFGIPSPSSARNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYN 169
++ A M A +H L + R + +F +R+L + I G++MDYTL Y
Sbjct: 28 LQNAADMPANMDKHALKKY-------RREAYHRVFVNRSLAMEKIKCFGFNMDYTLAVYK 80
Query: 170 VMAWEGRAYDYCMVNLRNMGFPVEGLAF--DPDLVIRGLVIDKEKGNLVKADRFGYVKRA 227
+E ++ + L ++G+P E L+F D RGLV D GNL+K D +G +
Sbjct: 81 SPEYESLGFELTVERLVSIGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLVC 140
Query: 228 MHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEA------VAYMQMVNRLDEG 281
HG + E Y + + R+ LNTLF++ E V + R
Sbjct: 141 AHGFNFIRGPETREQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSC 200
Query: 282 AIGPELGPL--DYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFVXXXXXXXXXXXXQKE 339
G + G L Y+ +++ V A+ H +G LK + + E +V KE
Sbjct: 201 ETGFKDGDLFMSYRSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKE 260
Query: 340 AGKKLLLITNSDYHYTDKMMQHSFNRFLPN-------DMGWRDLFNMVIVSARKPEFFQM 392
GK + L TNSDY YTDK+M + F+ P+ W+ F++++V ARKP FF
Sbjct: 261 VGK-VFLATNSDYKYTDKIMTYLFD--FPHGPKPGSSHRPWQSYFDLILVDARKPLFFGE 317
Query: 393 SHPLYEVVTGEGLMRPCFKARTGGL-----YSGGSAQMIENSLNIHGDEILYVGDHIYTD 447
L +V T G ++ TG L YSGGS+ I + L G +ILY+GDHI+ D
Sbjct: 318 GTVLRQVDTKTGKLK--IGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGD 375
Query: 448 VSQSKVHLRWRTALICRELEEE 469
+ +SK WRT L+ EL +E
Sbjct: 376 ILKSKKRQGWRTFLVIPELAQE 397
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 179/382 (46%), Gaps = 34/382 (8%)
Query: 110 IEEVARMEAQEAEHLLNDFGIPSPSSARNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYN 169
++ A M A +H L + R + +F +R+L + I G+ MDYTL Y
Sbjct: 28 LQNAADMPANMDKHALKKY-------RREAYHRVFVNRSLAMEKIKCFGFXMDYTLAVYK 80
Query: 170 VMAWEGRAYDYCMVNLRNMGFPVEGLAF--DPDLVIRGLVIDKEKGNLVKADRFGYVKRA 227
+E ++ + L ++G+P E L+F D RGLV D GNL+K D +G +
Sbjct: 81 SPEYESLGFELTVERLVSIGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLVC 140
Query: 228 MHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEA------VAYMQMVNRLDEG 281
HG + E Y + + R+ LNTLF++ E V + R
Sbjct: 141 AHGFNFIRGPETREQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSC 200
Query: 282 AIGPELGPL--DYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFVXXXXXXXXXXXXQKE 339
G + G L Y+ +++ V A+ H +G LK + + E +V KE
Sbjct: 201 ETGFKDGDLFMSYRSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKE 260
Query: 340 AGKKLLLITNSDYHYTDKMMQHSFNRFLPN-------DMGWRDLFNMVIVSARKPEFFQM 392
GK + L TNSDY YTDK+M + F+ P+ W+ F++++V ARKP FF
Sbjct: 261 VGK-VFLATNSDYKYTDKIMTYLFD--FPHGPKPGSSHRPWQSYFDLILVDARKPLFFGE 317
Query: 393 SHPLYEVVTGEGLMRPCFKARTGGL-----YSGGSAQMIENSLNIHGDEILYVGDHIYTD 447
L +V T G ++ TG L YSGGS+ I + L G +ILY+GDHI+ D
Sbjct: 318 GTVLRQVDTKTGKLK--IGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGD 375
Query: 448 VSQSKVHLRWRTALICRELEEE 469
+ +SK WRT L+ EL +E
Sbjct: 376 ILKSKKRQGWRTFLVIPELAQE 397
>pdb|4F5G|A Chain A, Rational Design And Directed Evolution Of E. Coli Apartate
Aminotransferase To Tyrosine Aminotransferase: Mutant
P2.
pdb|4F5G|B Chain B, Rational Design And Directed Evolution Of E. Coli Apartate
Aminotransferase To Tyrosine Aminotransferase: Mutant P2
Length = 406
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ G + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFGQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 260 NTL 262
NTL
Sbjct: 337 NTL 339
>pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate
Aminotransferase To Tyrosine Aminotransferase By The
Janus Algorithm: Chimera P6.
pdb|4F5K|B Chain B, Substrate Specificity Conversion Of Aspartate
Aminotransferase To Tyrosine Aminotransferase By The
Janus Algorithm: Chimera P6
Length = 406
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ G + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFGQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 260 NTL 262
NTL
Sbjct: 337 NTL 339
>pdb|1TOJ|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept Mutant Of E.
Coli Aspartate Aminotransferase
pdb|1TOK|A Chain A, Maleic Acid-bound Structure Of Srhept Mutant Of E. Coli
Aspartate Aminotransferase
pdb|1TOK|B Chain B, Maleic Acid-bound Structure Of Srhept Mutant Of E. Coli
Aspartate Aminotransferase
Length = 396
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ G + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFGQMKAAIRANYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1VBR|A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBR|B Chain B, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBU|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
pdb|1VBU|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
Length = 328
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 24/146 (16%)
Query: 162 DYTLMHYNVMAWEGRAYDYCMVN-LRNMGFPVEGLAFDPDLVIRGLVIDKEKGNLVKADR 220
DY++ N + + Y M+ L+ G PV+G+ F + RGL D + NL +R
Sbjct: 176 DYSIEEINAKS----NFVYNMIKELKEKGVPVDGIGFQMHIDYRGLNYDSFRRNL---ER 228
Query: 221 FGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSV---SEAVAYMQMVNR 277
F + ++ T M +S G E L+K++ E +F + + AV +Q
Sbjct: 229 FAKLGLQIYITEMDVRIPLS---GSEEYYLKKQA--EVCAKIFDICLDNPAVKAIQFWGF 283
Query: 278 LDEGAIGPELGPLDYKGLYKAVGKAL 303
D+ + P G +K GKAL
Sbjct: 284 TDKYSWVP--------GFFKGYGKAL 301
>pdb|3NIY|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NIY|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NJ3|A Chain A, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
pdb|3NJ3|B Chain B, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
Length = 341
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 180 YCMVN-LRNMGFPVEGLAFDPDLVIRGLVIDKEKGNLVKADRFGYVKRAMHGTTMLSNRA 238
Y M+ L+ G PV+G+ F + RGL D + NL +RF + ++ T M
Sbjct: 206 YNMIKELKEKGVPVDGIGFQMHIDYRGLNYDSFRRNL---ERFAKLGLQIYITEMDVRIP 262
Query: 239 VSEMYGRELVDLRKESRWEFLNTLFSV---SEAVAYMQMVNRLDEGAIGPELGPLDYKGL 295
+S G E L+K++ E +F + + AV +Q D+ + P G
Sbjct: 263 LS---GSEDYYLKKQA--EICAKIFDICLDNPAVKAIQFWGFTDKYSWVP--------GF 309
Query: 296 YKAVGKAL 303
+K GKAL
Sbjct: 310 FKGYGKAL 317
>pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d
Mutant Of E. Coli Aspartate Aminotransferase
pdb|1TOG|B Chain B, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d
Mutant Of E. Coli Aspartate Aminotransferase
Length = 396
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ G + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFGQMKAAIRDNYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid
pdb|2D63|A Chain A, Aspartate Aminotransferase Mutant Ma With Isovaleric Acid
pdb|2D7Y|A Chain A, Aspartate Aminotransferase Mutant Ma
Length = 396
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRVNYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid
Length = 396
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRVNYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab
pdb|2D7Z|A Chain A, Aspartate Aminotransferase Mutant Mab Complexed With
Maleic Acid
Length = 396
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRVNYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric
Acid
pdb|2D65|A Chain A, Aspartate Aminotransferase Mutant Mabc
Length = 396
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRVNYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHY|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHX|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHX|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHG|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHG|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHF|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHF|B Chain B, Aspartate Aminotransferase Hexamutant
pdb|1AHE|A Chain A, Aspartate Aminotransferase Hexamutant
pdb|1AHE|B Chain B, Aspartate Aminotransferase Hexamutant
Length = 396
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex
pdb|1ARI|B Chain B, Aspartate Aminotransferase, W140h Mutant, Maleate Complex
Length = 396
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli
Pyridoxal-5'-phosphate Dependent Aspartate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P4.
pdb|4F5I|B Chain B, Substrate Specificity Conversion Of E. Coli
Pyridoxal-5'-phosphate Dependent Aspartate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P4
Length = 406
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFSQMKAAIRANYSSPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 260 NTL 262
NTL
Sbjct: 337 NTL 339
>pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L
Length = 396
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|4F5J|A Chain A, Rational Design And Directed Evolution For Conversion Of
Substrate Specificity From E.coli Aspartate
Aminotransferase To Tyrosine Aminotransferase: Mutant
P5.
pdb|4F5J|B Chain B, Rational Design And Directed Evolution For Conversion Of
Substrate Specificity From E.coli Aspartate
Aminotransferase To Tyrosine Aminotransferase: Mutant P5
Length = 406
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 260 NTL 262
NTL
Sbjct: 337 NTL 339
>pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli
L-Aspartate Aminotransferase
(S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta)
Via Two Mechanisms At Ph 6.0
pdb|2QBT|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-Aspartate Aminotransferase By
(S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta)
Via Two Mechanisms (At Ph 8.0)
pdb|2QA3|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-Aspartate Aminotransferase By
(S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta)
Via Two Mechanisms (At Ph6.5)
pdb|2QB2|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-Aspartate Aminotransferase By
(S)-4,5-Dihydro-2thiophenecarboylic Acid (Sadta) Via Two
Mechanisms (At Ph 7.0).
pdb|2QB3|A Chain A, Structural Studies Reveal The Inactivation Of E. Coli
L-aspartate Aminotransferase By
(s)-4,5-dihydro-2-thiophenecarboxylic Acid (sadta) Via
Two Mechanisms (at Ph 7.5)
pdb|3QN6|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase Reconstituted With 1-Deaza-Pyridoxal
5'-Phosphate: Internal Aldimine And Stable L-Aspartate
External Aldimine
Length = 396
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f
pdb|1IX7|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Maleate
Complex
Length = 396
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y
And R386f Of Escherichia Coli Aspartate Aminotransferase
Length = 396
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A
Length = 396
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIA|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIB|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIB|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIC|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
pdb|1AIC|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking The
Pyridoxal-5'-Phosphate Binding Lysine Residue
Length = 396
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194a/y225f
Length = 396
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An
Active-Site Mutant Of Aspartate Aminotransferase From
Escherichia Coli
pdb|4DBC|A Chain A, Substrate Activation In Aspartate Aminotransferase
Length = 396
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The
Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1ASG|A Chain A, The Structural Basis For The Reduced Activity Of The
Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
Length = 396
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT
pdb|1ARH|B Chain B, Aspartate Aminotransferase, Y225rR386A MUTANT
Length = 396
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASL|B Chain B, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASM|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASM|B Chain B, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASN|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ASN|B Chain B, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase In Two Conformations: Comparison Of An
Unliganded Open And Two Liganded Closed Forms
pdb|1ARG|A Chain A, Aspartate Aminotransferase, Phospho-5'-Pyridoxyl Aspartate
Complex
pdb|1ARG|B Chain B, Aspartate Aminotransferase, Phospho-5'-Pyridoxyl Aspartate
Complex
pdb|1C9C|A Chain A, Aspartate Aminotransferase Complexed With
C3-Pyridoxal-5'-Phosphate
pdb|1CQ6|A Chain A, Aspartate Aminotransferase Complex With
C4-Pyridoxal-5p-Phosphate
pdb|1CQ7|A Chain A, Aspartate Aminotransferase (E.C. 2.6.1.1) Complexed With
C5-Pyridoxal- 5p-Phosphate
pdb|1CQ8|A Chain A, Aspartate Aminotransferase (E.C. 2.6.1.1) Complexed With
C6-Pyridoxal- 5p-Phosphate
pdb|1X28|A Chain A, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-L-Glutamic Acid
pdb|1X28|B Chain B, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-L-Glutamic Acid
pdb|1X29|A Chain A, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-2-Methyl-L-Glutamic Acid
pdb|1X29|B Chain B, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-2-Methyl-L-Glutamic Acid
pdb|1X2A|A Chain A, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-D-Glutamic Acid
pdb|1X2A|B Chain B, Crystal Structure Of E.Coli Aspat Complexed With N-
Phosphopyridoxyl-D-Glutamic Acid
pdb|1AAW|A Chain A, The Structural Basis For The Altered Substrate Specificity
Of The R292d Active Site Mutant Of Aspartate
Aminotransferase From E. Coli
pdb|1AMQ|A Chain A, X-Ray Crystallographic Study Of Pyridoxamine
5'-Phosphate-Type Aspartate Aminotransferases From
Escherichia Coli In Three Forms
pdb|1AMR|A Chain A, X-Ray Crystallographic Study Of Pyridoxamine
5'-Phosphate-Type Aspartate Aminotransferases From
Escherichia Coli In Three Forms
pdb|1AMS|A Chain A, X-Ray Crystallographic Study Of Pyridoxamine
5'-Phosphate-Type Aspartate Aminotransferases From
Escherichia Coli In Three Forms
pdb|1ARS|A Chain A, X-ray Crystallographic Study Of Pyridoxal
5'-phosphate-type Aspartate Aminotransferases From
Escherichia Coli In Open And Closed Form
pdb|1ART|A Chain A, X-ray Crystallographic Study Of Pyridoxal
5'-phosphate-type Aspartate Aminotransferases From
Escherichia Coli In Open And Closed Form
pdb|1ASA|A Chain A, The Structural Basis For The Reduced Activity Of The
Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1ASD|A Chain A, The Structure Of Wild Type E. Coli Aspartate
Aminotransferase Reconstituted With N-Meplp
pdb|1ASE|A Chain A, The Structure Of Wild Type E. Coli Aspartate
Aminotransferase Reconstituted With Plp-N-Oxide
pdb|3PA9|A Chain A, Mechanism Of Inactivation Of E. Coli Aspartate
Aminotransferase By
(S)-4-Amino-4,5-Dihydro-2-Furancarboxylic Acid (S-Adfa)
Ph 7.5
pdb|3PAA|A Chain A, Mechanism Of Inactivation Of E. Coli Aspartate
Aminotransferase By
(S)-4-Amino-4,5-Dihydro-2-Furancarboxylic Acid (S-Adfa)
Ph 8.0
pdb|3QPG|A Chain A, Crystal Structures Of Escherichia Coli Aspartate
Aminotransferase Reconstituted With 1-Deaza-Pyridoxal
5'-Phosphate: Internal Aldimine And Stable L-Aspartate
External Aldimine
Length = 396
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y
Mutation, With Bound Maleate
Length = 396
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template
For The Interconversion Of Substrate Specificity And
Activity To Tyrosine Aminotransferase By The Janus
Algorithm.
pdb|4F5M|B Chain B, Wild-type E. Coli Aspartate Aminotransferase: A Template
For The Interconversion Of Substrate Specificity And
Activity To Tyrosine Aminotransferase By The Janus
Algorithm
Length = 406
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 260 NTL 262
NTL
Sbjct: 337 NTL 339
>pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w
Mutation, With Bound Maleate
Length = 396
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1ASB|A Chain A, The Structural Basis For The Reduced Activity Of The
D223a(D222a) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1ASC|A Chain A, The Structural Basis For The Reduced Activity Of The
D223a(D222a) Active Site Mutant Of E. Coli Aspartate
Aminotransferase
pdb|1SPA|A Chain A, Role Of Asp222 In The Catalytic Mechanism Of Escherichia
Coli Aspartate Aminotransferase: The Amino Acid Residue
Which Enhances The Function Of The Enzyme-Bound Coenzyme
Pyridoxal 5'-Phosphate
Length = 396
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant
pdb|1BQA|B Chain B, Aspartate Aminotransferase P195a Mutant
Length = 396
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation,
With Bound Maleate
pdb|5EAA|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation
Length = 396
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f
Mutation, With Bound Maleate
Length = 396
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT
pdb|1BQD|B Chain B, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT
Length = 396
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 267 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326
Query: 260 NTL 262
NTL
Sbjct: 327 NTL 329
>pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To
Tyrosine Aminotransferase: Chimera P1.
pdb|4F5F|B Chain B, Structure Of Aspartate Aminotransferase Conversion To
Tyrosine Aminotransferase: Chimera P1
Length = 406
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 207 VIDKEKGNLVKADRFGYVKRAMHGT----TMLSNRAVSEMYGRELVDLR---KESRWEFL 259
+D+ + A R Y HG T+LSN A+ ++ +EL D+R + R F+
Sbjct: 277 TVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 336
Query: 260 NTL 262
NTL
Sbjct: 337 NTL 339
>pdb|3N75|A Chain A, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|B Chain B, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|C Chain C, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|D Chain D, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|E Chain E, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3Q16|A Chain A, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|B Chain B, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|C Chain C, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|D Chain D, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|E Chain E, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
Length = 715
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 100 IDGEAALDGPIEEVARMEAQEAEHLLNDFGIPSPSSARN-SPRGIFCSRT--LNLRSISA 156
ID E PI+ E + ++DFGIP+ A+ GI +T NL + +
Sbjct: 479 IDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFS 538
Query: 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLR 186
IG D L + RA+D +NLR
Sbjct: 539 IGIDKTKALSLLRALTDFKRAFD---LNLR 565
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,418,580
Number of Sequences: 62578
Number of extensions: 611526
Number of successful extensions: 1548
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1519
Number of HSP's gapped (non-prelim): 41
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)