Query 007924
Match_columns 585
No_of_seqs 200 out of 302
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 17:09:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05761 5_nucleotid: 5' nucle 100.0 3E-133 6E-138 1077.4 28.2 408 143-583 1-416 (448)
2 KOG2470 Similar to IMP-GMP spe 100.0 3E-115 7E-120 893.0 18.3 439 97-583 11-464 (510)
3 TIGR02244 HAD-IG-Ncltidse HAD 100.0 2E-107 3E-112 852.4 28.2 337 143-482 1-342 (343)
4 KOG2469 IMP-GMP specific 5'-nu 100.0 4E-105 8E-110 834.3 24.2 409 135-583 8-421 (424)
5 TIGR02253 CTE7 HAD superfamily 99.0 3E-09 6.6E-14 103.0 14.1 105 323-464 92-196 (221)
6 TIGR01422 phosphonatase phosph 98.8 9E-08 2E-12 95.6 14.0 102 324-463 98-201 (253)
7 PRK13288 pyrophosphatase PpaX; 98.8 1.2E-07 2.5E-12 92.2 13.8 101 325-463 82-182 (214)
8 PLN03243 haloacid dehalogenase 98.7 1.1E-07 2.4E-12 96.9 13.5 101 325-463 109-209 (260)
9 PRK10826 2-deoxyglucose-6-phos 98.6 1.4E-06 3E-11 85.3 16.0 103 325-465 92-194 (222)
10 PRK13222 phosphoglycolate phos 98.6 1.4E-06 3.1E-11 84.4 15.5 102 324-463 92-193 (226)
11 PRK13478 phosphonoacetaldehyde 98.6 9E-07 2E-11 89.5 14.4 103 324-464 100-204 (267)
12 TIGR03351 PhnX-like phosphonat 98.6 8.6E-07 1.9E-11 86.2 13.5 102 325-464 87-192 (220)
13 PLN02940 riboflavin kinase 98.5 1.5E-06 3.4E-11 93.3 15.7 101 326-463 94-194 (382)
14 PLN02575 haloacid dehalogenase 98.5 2.3E-06 4.9E-11 92.3 15.1 100 327-464 218-317 (381)
15 TIGR02247 HAD-1A3-hyp Epoxide 98.5 2.6E-06 5.6E-11 82.5 13.7 107 326-472 95-207 (211)
16 PRK13225 phosphoglycolate phos 98.5 2.6E-06 5.7E-11 87.6 14.2 101 324-465 141-241 (273)
17 PRK10725 fructose-1-P/6-phosph 98.5 4.6E-06 1E-10 78.9 14.6 93 331-462 93-185 (188)
18 PRK10563 6-phosphogluconate ph 98.4 5.7E-06 1.2E-10 80.7 14.5 100 323-463 86-186 (221)
19 PRK11587 putative phosphatase; 98.3 2E-05 4.4E-10 77.2 16.4 100 325-463 83-182 (218)
20 PF13419 HAD_2: Haloacid dehal 98.3 1E-06 2.2E-11 80.1 6.1 103 322-462 74-176 (176)
21 TIGR01509 HAD-SF-IA-v3 haloaci 98.2 4.7E-06 1E-10 77.7 9.2 100 324-462 84-183 (183)
22 TIGR01428 HAD_type_II 2-haloal 98.2 2.3E-06 4.9E-11 82.1 7.1 101 326-464 93-193 (198)
23 TIGR01548 HAD-SF-IA-hyp1 haloa 98.1 6.8E-05 1.5E-09 72.2 15.2 85 331-453 112-196 (197)
24 PRK09456 ?-D-glucose-1-phospha 98.1 9.4E-06 2E-10 78.4 8.9 103 324-463 83-185 (199)
25 PRK13226 phosphoglycolate phos 98.1 9.3E-06 2E-10 80.5 8.1 103 323-463 93-195 (229)
26 TIGR01454 AHBA_synth_RP 3-amin 98.1 9.3E-06 2E-10 78.4 7.2 103 323-463 73-175 (205)
27 PLN02770 haloacid dehalogenase 98.0 1.6E-05 3.5E-10 79.9 7.9 101 325-463 108-208 (248)
28 PRK06698 bifunctional 5'-methy 98.0 0.00019 4E-09 78.7 16.5 99 325-464 330-428 (459)
29 TIGR01449 PGP_bact 2-phosphogl 98.0 2.4E-05 5.2E-10 75.3 8.4 104 322-463 82-185 (213)
30 COG0546 Gph Predicted phosphat 98.0 0.00017 3.7E-09 71.3 14.5 102 323-462 87-188 (220)
31 TIGR01662 HAD-SF-IIIA HAD-supe 97.9 1.9E-05 4.2E-10 71.2 6.5 100 324-464 24-132 (132)
32 PLN02919 haloacid dehalogenase 97.9 0.00016 3.5E-09 87.2 15.9 102 327-466 163-265 (1057)
33 PRK09449 dUMP phosphatase; Pro 97.9 2.3E-05 4.9E-10 76.5 7.0 102 325-464 95-197 (224)
34 TIGR02252 DREG-2 REG-2-like, H 97.9 2E-05 4.4E-10 75.7 5.8 99 325-461 105-203 (203)
35 PRK14988 GMP/IMP nucleotidase; 97.8 3E-05 6.4E-10 77.1 5.5 103 325-465 93-195 (224)
36 cd01427 HAD_like Haloacid deha 97.7 6E-05 1.3E-09 65.1 5.9 117 324-462 23-139 (139)
37 KOG3085 Predicted hydrolase (H 97.7 0.0002 4.3E-09 73.0 10.4 105 320-463 109-213 (237)
38 TIGR02254 YjjG/YfnB HAD superf 97.7 7.9E-05 1.7E-09 72.0 6.8 103 325-465 97-200 (224)
39 TIGR01990 bPGM beta-phosphoglu 97.7 6.1E-05 1.3E-09 70.8 5.7 97 326-462 88-184 (185)
40 COG1011 Predicted hydrolase (H 97.7 9.6E-05 2.1E-09 71.6 6.9 106 324-467 98-203 (229)
41 TIGR02009 PGMB-YQAB-SF beta-ph 97.7 9E-05 1.9E-09 69.6 6.4 100 323-462 86-185 (185)
42 TIGR01993 Pyr-5-nucltdase pyri 97.6 8.2E-05 1.8E-09 70.7 6.0 102 324-462 83-184 (184)
43 TIGR01691 enolase-ppase 2,3-di 97.6 0.00014 3.1E-09 72.9 7.7 103 325-466 95-199 (220)
44 TIGR01668 YqeG_hyp_ppase HAD s 97.6 0.0001 2.2E-09 70.5 5.7 94 327-466 45-139 (170)
45 PRK13223 phosphoglycolate phos 97.5 0.00026 5.7E-09 72.5 8.5 102 324-463 100-201 (272)
46 PLN02779 haloacid dehalogenase 97.5 0.00017 3.8E-09 74.5 6.7 104 325-464 144-247 (286)
47 PLN02811 hydrolase 97.5 0.00028 6.1E-09 69.4 7.2 102 327-464 80-185 (220)
48 PLN02954 phosphoserine phospha 97.3 0.0048 1E-07 60.2 13.8 37 326-362 85-121 (224)
49 PRK10748 flavin mononucleotide 97.3 0.00033 7.1E-09 70.0 5.7 99 324-465 112-210 (238)
50 TIGR01685 MDP-1 magnesium-depe 97.3 0.00055 1.2E-08 66.6 6.7 109 327-464 47-158 (174)
51 TIGR01656 Histidinol-ppas hist 97.2 0.00043 9.2E-09 64.3 5.0 103 326-463 28-145 (147)
52 TIGR01261 hisB_Nterm histidino 97.1 0.00096 2.1E-08 63.8 6.6 107 323-464 27-148 (161)
53 TIGR01549 HAD-SF-IA-v1 haloaci 97.1 0.00072 1.6E-08 62.1 5.3 86 328-453 67-152 (154)
54 COG2179 Predicted hydrolase of 97.1 0.00072 1.6E-08 65.7 4.9 93 327-466 48-141 (175)
55 PRK06769 hypothetical protein; 97.0 0.00087 1.9E-08 64.3 5.2 40 424-465 100-139 (173)
56 PRK08942 D,D-heptose 1,7-bisph 96.9 0.0021 4.5E-08 61.5 6.9 108 326-464 30-148 (181)
57 PRK11590 hypothetical protein; 96.8 0.034 7.4E-07 54.7 14.1 95 326-450 96-191 (211)
58 TIGR01681 HAD-SF-IIIC HAD-supe 96.6 0.0017 3.6E-08 59.5 3.6 84 328-446 32-120 (128)
59 PRK05446 imidazole glycerol-ph 96.5 0.0057 1.2E-07 65.9 7.4 108 324-462 29-147 (354)
60 TIGR00213 GmhB_yaeD D,D-heptos 96.5 0.0063 1.4E-07 58.1 6.6 112 327-463 28-150 (176)
61 TIGR01664 DNA-3'-Pase DNA 3'-p 96.4 0.006 1.3E-07 58.5 6.2 103 319-460 36-159 (166)
62 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.2 0.0016 3.5E-08 66.3 1.1 101 329-464 124-225 (257)
63 PRK11133 serB phosphoserine ph 96.2 0.11 2.5E-06 55.1 14.5 106 324-460 180-288 (322)
64 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.1 0.026 5.7E-07 53.6 8.6 108 326-461 81-188 (201)
65 smart00577 CPDc catalytic doma 96.1 0.014 3.1E-07 54.5 6.4 86 322-451 42-131 (148)
66 TIGR01452 PGP_euk phosphoglyco 95.4 0.0054 1.2E-07 62.9 0.8 37 426-463 211-247 (279)
67 TIGR01489 DKMTPPase-SF 2,3-dik 95.2 0.11 2.4E-06 48.7 9.1 51 324-383 71-121 (188)
68 TIGR00338 serB phosphoserine p 95.2 0.094 2E-06 51.0 8.6 106 324-460 84-192 (219)
69 PRK09552 mtnX 2-hydroxy-3-keto 95.0 0.21 4.5E-06 49.2 10.6 40 324-363 73-112 (219)
70 KOG3109 Haloacid dehalogenase- 95.0 0.036 7.9E-07 56.3 5.1 113 320-466 95-208 (244)
71 TIGR01672 AphA HAD superfamily 94.9 0.054 1.2E-06 55.3 6.4 94 325-463 114-211 (237)
72 TIGR01493 HAD-SF-IA-v2 Haloaci 94.7 0.015 3.3E-07 54.4 1.6 84 326-453 91-174 (175)
73 TIGR01686 FkbH FkbH-like domai 94.7 0.04 8.7E-07 57.9 4.9 87 328-455 34-123 (320)
74 COG0647 NagD Predicted sugar p 94.6 0.14 3.1E-06 53.4 8.5 37 427-464 200-236 (269)
75 COG0637 Predicted phosphatase/ 94.5 0.36 7.7E-06 48.2 11.0 101 326-464 87-187 (221)
76 TIGR01670 YrbI-phosphatas 3-de 94.5 0.019 4.2E-07 54.0 1.8 83 333-463 36-118 (154)
77 PF09419 PGP_phosphatase: Mito 93.9 0.18 3.9E-06 49.2 7.2 89 327-462 61-163 (168)
78 PF00702 Hydrolase: haloacid d 93.9 0.074 1.6E-06 50.6 4.5 82 327-452 129-212 (215)
79 TIGR01459 HAD-SF-IIA-hyp4 HAD- 93.7 0.03 6.5E-07 56.2 1.4 99 328-462 141-240 (242)
80 TIGR02726 phenyl_P_delta pheny 93.5 0.072 1.6E-06 51.6 3.7 110 302-461 13-123 (169)
81 TIGR01490 HAD-SF-IB-hyp1 HAD-s 93.4 0.14 3.1E-06 49.0 5.6 107 327-464 89-198 (202)
82 PHA02597 30.2 hypothetical pro 93.3 0.18 3.8E-06 48.5 6.0 100 325-465 74-176 (197)
83 PF13242 Hydrolase_like: HAD-h 92.2 0.14 2.9E-06 42.5 3.1 42 424-466 11-52 (75)
84 PHA02530 pseT polynucleotide k 91.2 0.23 4.9E-06 51.0 4.1 105 327-462 189-295 (300)
85 KOG2469 IMP-GMP specific 5'-nu 91.1 0.004 8.7E-08 67.7 -9.0 197 137-359 37-237 (424)
86 TIGR01684 viral_ppase viral ph 90.8 0.35 7.6E-06 51.3 5.1 69 308-390 133-202 (301)
87 TIGR03333 salvage_mtnX 2-hydro 90.0 1.7 3.8E-05 42.6 9.0 40 323-362 68-107 (214)
88 TIGR01663 PNK-3'Pase polynucle 90.0 0.5 1.1E-05 53.7 5.8 35 318-352 190-224 (526)
89 PRK08238 hypothetical protein; 89.9 0.76 1.6E-05 51.6 7.1 46 327-384 74-119 (479)
90 PHA03398 viral phosphatase sup 89.5 0.53 1.1E-05 50.0 5.1 69 308-390 135-204 (303)
91 PRK09484 3-deoxy-D-manno-octul 89.2 0.33 7.1E-06 47.0 3.1 81 332-459 55-135 (183)
92 PRK13582 thrH phosphoserine ph 88.1 1.2 2.6E-05 42.7 6.2 36 326-362 69-104 (205)
93 TIGR01457 HAD-SF-IIA-hyp2 HAD- 88.1 0.45 9.7E-06 48.3 3.4 37 426-463 187-223 (249)
94 TIGR02251 HIF-SF_euk Dullard-l 87.1 0.82 1.8E-05 43.7 4.4 55 319-382 36-90 (162)
95 TIGR01525 ATPase-IB_hvy heavy 87.0 1 2.2E-05 51.1 5.8 35 328-362 387-422 (556)
96 TIGR01459 HAD-SF-IIA-hyp4 HAD- 85.7 0.91 2E-05 45.6 4.1 49 327-384 26-77 (242)
97 PRK11009 aphA acid phosphatase 85.3 1.8 3.9E-05 44.4 6.0 65 312-384 101-170 (237)
98 PTZ00445 p36-lilke protein; Pr 84.8 1.2 2.6E-05 45.3 4.5 147 303-463 54-205 (219)
99 PLN02645 phosphoglycolate phos 84.1 0.85 1.9E-05 47.9 3.2 37 426-463 239-275 (311)
100 PRK03669 mannosyl-3-phosphogly 83.1 1.2 2.5E-05 45.5 3.6 42 149-192 2-43 (271)
101 TIGR01456 CECR5 HAD-superfamil 81.3 0.9 2E-05 47.9 2.1 29 435-464 264-292 (321)
102 TIGR01460 HAD-SF-IIA Haloacid 81.3 1.3 2.8E-05 44.6 3.1 38 425-463 196-234 (236)
103 TIGR01545 YfhB_g-proteo haloac 81.1 5.7 0.00012 39.5 7.6 94 326-449 95-189 (210)
104 PRK10444 UMP phosphatase; Prov 79.8 1.7 3.6E-05 44.5 3.4 37 426-463 183-219 (248)
105 TIGR01512 ATPase-IB2_Cd heavy 79.0 2.1 4.5E-05 48.5 4.1 35 328-362 365-400 (536)
106 PF06888 Put_Phosphatase: Puta 77.5 10 0.00022 39.0 8.2 113 326-461 72-195 (234)
107 TIGR02250 FCP1_euk FCP1-like p 77.1 3.7 8.1E-05 39.3 4.7 43 319-362 52-94 (156)
108 TIGR01487 SPP-like sucrose-pho 75.9 2.6 5.7E-05 41.1 3.4 30 423-453 152-181 (215)
109 PHA02597 30.2 hypothetical pro 75.7 2.1 4.6E-05 41.1 2.6 14 154-167 2-15 (197)
110 COG0561 Cof Predicted hydrolas 75.2 2.5 5.3E-05 42.6 3.1 38 153-192 2-39 (264)
111 TIGR02137 HSK-PSP phosphoserin 75.1 6.8 0.00015 38.9 6.1 36 326-362 69-104 (203)
112 PF13344 Hydrolase_6: Haloacid 75.0 2.9 6.2E-05 37.0 3.0 34 327-360 16-49 (101)
113 TIGR01544 HAD-SF-IE haloacid d 74.6 22 0.00047 37.6 9.9 105 324-454 120-230 (277)
114 PRK10748 flavin mononucleotide 72.8 1.9 4.1E-05 43.2 1.5 20 150-169 6-25 (238)
115 PLN02779 haloacid dehalogenase 72.4 4 8.7E-05 42.4 3.9 36 152-191 38-73 (286)
116 PLN02770 haloacid dehalogenase 70.9 4.8 0.0001 40.6 3.9 36 151-191 19-54 (248)
117 PRK09449 dUMP phosphatase; Pro 70.0 4 8.7E-05 39.8 3.1 32 153-191 2-33 (224)
118 TIGR01662 HAD-SF-IIIA HAD-supe 69.5 2.8 6.1E-05 37.6 1.8 38 155-192 1-44 (132)
119 PF05152 DUF705: Protein of un 67.1 8.6 0.00019 40.9 4.9 68 317-393 134-201 (297)
120 TIGR02254 YjjG/YfnB HAD superf 66.8 5.5 0.00012 38.4 3.3 18 154-171 1-18 (224)
121 TIGR01511 ATPase-IB1_Cu copper 66.7 7.1 0.00015 44.6 4.6 35 328-362 408-442 (562)
122 TIGR01488 HAD-SF-IB Haloacid D 66.4 6.6 0.00014 36.5 3.6 37 326-362 74-110 (177)
123 PRK10530 pyridoxal phosphate ( 66.2 6.5 0.00014 39.3 3.8 33 423-457 204-236 (272)
124 COG0560 SerB Phosphoserine pho 64.7 20 0.00043 36.0 6.8 42 321-362 73-114 (212)
125 TIGR01993 Pyr-5-nucltdase pyri 64.2 8.7 0.00019 36.4 4.0 35 155-191 1-37 (184)
126 TIGR02252 DREG-2 REG-2-like, H 63.0 8.8 0.00019 36.8 3.9 32 155-191 1-32 (203)
127 PRK13226 phosphoglycolate phos 62.4 8.9 0.00019 38.1 3.9 35 153-192 11-45 (229)
128 PRK10513 sugar phosphate phosp 62.0 7.5 0.00016 39.1 3.3 29 423-452 201-229 (270)
129 TIGR01689 EcbF-BcbF capsule bi 61.6 6 0.00013 36.9 2.4 15 155-169 2-16 (126)
130 PRK01158 phosphoglycolate phos 61.2 8.2 0.00018 37.7 3.4 34 423-458 162-195 (230)
131 TIGR01664 DNA-3'-Pase DNA 3'-p 60.8 5.7 0.00012 38.1 2.1 41 153-193 12-62 (166)
132 TIGR02009 PGMB-YQAB-SF beta-ph 59.7 11 0.00024 35.2 3.9 16 154-169 1-16 (185)
133 PRK14988 GMP/IMP nucleotidase; 58.7 5.5 0.00012 39.7 1.7 20 149-168 5-24 (224)
134 PRK13582 thrH phosphoserine ph 58.2 8.5 0.00018 36.9 2.8 22 429-451 139-160 (205)
135 PTZ00174 phosphomannomutase; P 57.9 12 0.00025 37.9 3.9 37 153-191 4-40 (247)
136 PF08645 PNK3P: Polynucleotide 57.0 9 0.0002 36.7 2.8 34 317-350 21-54 (159)
137 PRK00192 mannosyl-3-phosphogly 56.1 11 0.00025 38.3 3.5 36 423-460 195-231 (273)
138 TIGR01670 YrbI-phosphatas 3-de 55.9 12 0.00027 35.1 3.5 39 154-192 1-47 (154)
139 PF08645 PNK3P: Polynucleotide 55.7 6.7 0.00014 37.6 1.6 17 155-171 1-17 (159)
140 PRK10976 putative hydrolase; P 55.0 12 0.00027 37.5 3.5 28 423-451 195-222 (266)
141 TIGR01689 EcbF-BcbF capsule bi 54.0 15 0.00032 34.4 3.5 101 306-434 6-123 (126)
142 cd01427 HAD_like Haloacid deha 53.5 11 0.00024 32.1 2.5 15 156-170 1-15 (139)
143 TIGR01449 PGP_bact 2-phosphogl 53.3 12 0.00026 35.9 3.0 30 157-191 1-30 (213)
144 COG0731 Fe-S oxidoreductases [ 53.2 11 0.00024 40.2 2.9 81 262-352 31-120 (296)
145 TIGR02461 osmo_MPG_phos mannos 52.6 12 0.00026 37.5 3.0 34 156-192 1-34 (225)
146 PRK15126 thiamin pyrimidine py 52.6 12 0.00025 38.0 2.9 26 423-449 193-218 (272)
147 TIGR01684 viral_ppase viral ph 52.5 13 0.00028 39.7 3.3 47 148-195 120-168 (301)
148 PRK13223 phosphoglycolate phos 52.4 16 0.00035 37.6 3.9 34 153-191 12-45 (272)
149 PLN02645 phosphoglycolate phos 51.5 14 0.00031 38.7 3.5 47 306-360 33-79 (311)
150 TIGR00338 serB phosphoserine p 51.0 8.4 0.00018 37.4 1.5 19 151-169 11-29 (219)
151 TIGR01452 PGP_euk phosphoglyco 50.6 14 0.0003 38.1 3.1 37 153-192 1-37 (279)
152 PLN02887 hydrolase family prot 49.7 44 0.00096 38.8 7.2 37 153-191 307-343 (580)
153 smart00775 LNS2 LNS2 domain. T 49.4 16 0.00034 34.9 3.0 14 156-169 1-14 (157)
154 TIGR02463 MPGP_rel mannosyl-3- 49.3 17 0.00037 35.4 3.4 29 423-452 184-212 (221)
155 TIGR01990 bPGM beta-phosphoglu 48.7 18 0.00038 33.9 3.3 31 156-191 1-31 (185)
156 TIGR01482 SPP-subfamily Sucros 47.9 12 0.00026 36.3 2.1 33 157-191 1-33 (225)
157 TIGR03752 conj_TIGR03752 integ 45.4 1.2E+02 0.0025 34.7 9.4 78 461-556 66-144 (472)
158 PHA03398 viral phosphatase sup 45.1 20 0.00043 38.5 3.3 47 149-196 123-171 (303)
159 COG1011 Predicted hydrolase (H 44.9 19 0.00042 34.8 3.0 23 151-173 1-23 (229)
160 TIGR01681 HAD-SF-IIIC HAD-supe 43.8 24 0.00052 32.2 3.3 14 155-168 1-14 (128)
161 PF09949 DUF2183: Uncharacteri 42.2 37 0.0008 30.6 4.1 27 344-370 2-28 (100)
162 PRK08883 ribulose-phosphate 3- 42.0 13 0.00028 37.6 1.3 128 294-446 47-200 (220)
163 TIGR01428 HAD_type_II 2-haloal 41.8 14 0.0003 35.4 1.4 17 154-170 1-17 (198)
164 TIGR00213 GmhB_yaeD D,D-heptos 39.8 29 0.00064 33.0 3.3 39 155-193 2-46 (176)
165 TIGR01458 HAD-SF-IIA-hyp3 HAD- 39.8 24 0.00052 36.1 2.9 27 327-353 23-49 (257)
166 TIGR01491 HAD-SF-IB-PSPlk HAD- 39.0 16 0.00035 34.6 1.4 16 154-169 4-19 (201)
167 PF00834 Ribul_P_3_epim: Ribul 38.2 62 0.0013 32.5 5.4 51 328-391 92-142 (201)
168 PF06941 NT5C: 5' nucleotidase 38.2 16 0.00035 35.3 1.3 27 327-353 75-101 (191)
169 PRK14502 bifunctional mannosyl 37.7 56 0.0012 38.8 5.7 45 146-192 408-452 (694)
170 PF11019 DUF2608: Protein of u 36.7 91 0.002 32.3 6.5 47 318-364 74-120 (252)
171 PRK08745 ribulose-phosphate 3- 35.2 36 0.00078 34.7 3.3 128 295-446 52-204 (223)
172 cd06280 PBP1_LacI_like_4 Ligan 34.8 72 0.0016 31.3 5.3 25 139-163 172-211 (263)
173 PF12689 Acid_PPase: Acid Phos 34.5 20 0.00043 35.1 1.3 11 155-165 4-14 (169)
174 PRK06769 hypothetical protein; 34.4 30 0.00065 33.2 2.4 45 151-195 1-50 (173)
175 COG4850 Uncharacterized conser 34.2 42 0.00092 36.6 3.7 55 328-382 199-258 (373)
176 PF00702 Hydrolase: haloacid d 34.2 21 0.00046 33.8 1.4 18 154-171 1-18 (215)
177 TIGR01509 HAD-SF-IA-v3 haloaci 34.0 15 0.00033 34.0 0.3 16 156-171 1-16 (183)
178 PRK12702 mannosyl-3-phosphogly 33.9 42 0.00091 36.0 3.6 37 154-192 1-37 (302)
179 TIGR01457 HAD-SF-IIA-hyp2 HAD- 33.8 41 0.00088 34.2 3.4 22 328-349 20-41 (249)
180 PLN02423 phosphomannomutase 33.8 43 0.00093 34.1 3.6 20 433-452 199-221 (245)
181 PRK10727 DNA-binding transcrip 33.4 84 0.0018 32.5 5.7 68 139-207 237-329 (343)
182 PF12710 HAD: haloacid dehalog 33.2 31 0.00068 32.2 2.3 35 328-362 92-126 (192)
183 smart00775 LNS2 LNS2 domain. T 32.9 36 0.00078 32.4 2.7 37 327-363 29-65 (157)
184 TIGR00685 T6PP trehalose-phosp 32.4 22 0.00048 35.8 1.2 39 424-463 173-217 (244)
185 TIGR01672 AphA HAD superfamily 31.7 23 0.0005 36.3 1.3 14 156-169 65-78 (237)
186 TIGR01522 ATPase-IIA2_Ca golgi 31.6 55 0.0012 39.6 4.5 95 328-445 531-628 (884)
187 cd06270 PBP1_GalS_like Ligand 31.1 1.3E+02 0.0028 29.5 6.4 24 139-162 177-215 (268)
188 PRK08942 D,D-heptose 1,7-bisph 30.8 43 0.00094 31.9 2.9 17 153-170 2-18 (181)
189 TIGR00099 Cof-subfamily Cof su 30.4 45 0.00098 33.3 3.1 34 156-191 1-34 (256)
190 PRK10444 UMP phosphatase; Prov 30.3 42 0.0009 34.4 2.8 36 327-362 19-54 (248)
191 PF03031 NIF: NLI interacting 30.2 65 0.0014 29.9 3.9 53 320-381 31-83 (159)
192 TIGR01493 HAD-SF-IA-v2 Haloaci 30.2 22 0.00048 33.1 0.7 14 156-169 1-14 (175)
193 PF02358 Trehalose_PPase: Treh 30.2 34 0.00073 34.2 2.1 29 159-187 2-30 (235)
194 cd06289 PBP1_MalI_like Ligand- 29.8 1.3E+02 0.0029 29.1 6.2 24 139-162 178-216 (268)
195 PF10146 zf-C4H2: Zinc finger- 29.5 2.4E+02 0.0052 29.2 8.1 12 462-473 33-44 (230)
196 PRK10401 DNA-binding transcrip 29.0 1.3E+02 0.0028 31.2 6.2 34 139-173 237-285 (346)
197 PF12325 TMF_TATA_bd: TATA ele 29.0 4.9E+02 0.011 24.4 9.6 83 455-553 10-93 (120)
198 TIGR01261 hisB_Nterm histidino 28.9 61 0.0013 31.0 3.5 39 155-193 2-49 (161)
199 COG5610 Predicted hydrolase (H 28.6 1.1E+02 0.0024 35.0 5.8 117 319-471 92-210 (635)
200 TIGR01486 HAD-SF-IIB-MPGP mann 28.4 54 0.0012 33.0 3.2 34 423-458 181-216 (256)
201 cd06296 PBP1_CatR_like Ligand- 28.2 1.2E+02 0.0026 29.6 5.6 24 139-162 178-216 (270)
202 PF07058 Myosin_HC-like: Myosi 28.2 2.9E+02 0.0062 30.1 8.5 56 463-523 44-103 (351)
203 KOG2961 Predicted hydrolase (H 27.8 49 0.0011 32.7 2.6 45 420-465 121-169 (190)
204 COG0241 HisB Histidinol phosph 27.6 50 0.0011 32.9 2.7 38 308-349 12-55 (181)
205 PF10146 zf-C4H2: Zinc finger- 27.0 4.7E+02 0.01 27.0 9.7 18 478-495 36-53 (230)
206 PF08282 Hydrolase_3: haloacid 26.8 53 0.0012 31.4 2.7 33 157-191 1-33 (254)
207 PRK10671 copA copper exporting 26.6 1.2E+02 0.0025 36.6 6.1 34 329-362 654-687 (834)
208 TIGR01663 PNK-3'Pase polynucle 26.5 41 0.00089 38.6 2.2 41 152-192 166-216 (526)
209 TIGR01454 AHBA_synth_RP 3-amin 26.4 25 0.00054 33.9 0.4 30 157-191 1-31 (205)
210 TIGR01668 YqeG_hyp_ppase HAD s 25.6 80 0.0017 30.1 3.7 48 142-192 14-62 (170)
211 PF08444 Gly_acyl_tr_C: Aralky 25.4 63 0.0014 28.8 2.7 32 161-192 24-55 (89)
212 PRK10884 SH3 domain-containing 25.0 4.1E+02 0.0088 27.0 8.7 14 461-474 93-106 (206)
213 KOG3120 Predicted haloacid deh 24.8 4.3E+02 0.0093 27.8 8.8 125 311-460 75-207 (256)
214 PRK10187 trehalose-6-phosphate 24.7 39 0.00085 34.8 1.5 39 423-462 179-219 (266)
215 TIGR01656 Histidinol-ppas hist 24.6 61 0.0013 30.0 2.6 17 155-171 1-17 (147)
216 PRK10339 DNA-binding transcrip 24.2 1.3E+02 0.0027 30.9 5.1 30 139-169 234-278 (327)
217 KOG1937 Uncharacterized conser 24.0 2.7E+02 0.0059 31.8 7.7 82 495-578 366-451 (521)
218 TIGR01484 HAD-SF-IIB HAD-super 23.9 72 0.0016 30.6 3.1 32 157-189 2-33 (204)
219 cd06275 PBP1_PurR Ligand-bindi 23.7 1.5E+02 0.0032 29.0 5.2 24 139-162 178-216 (269)
220 KOG2882 p-Nitrophenyl phosphat 23.6 63 0.0014 34.8 2.8 42 431-473 238-279 (306)
221 KOG3109 Haloacid dehalogenase- 23.2 1E+02 0.0022 32.1 4.0 54 153-207 14-75 (244)
222 TIGR02417 fruct_sucro_rep D-fr 23.1 75 0.0016 32.5 3.2 66 139-205 238-327 (327)
223 COG2841 Uncharacterized protei 23.1 3.9E+02 0.0084 23.2 6.7 34 463-499 2-35 (72)
224 PF15290 Syntaphilin: Golgi-lo 23.0 2E+02 0.0042 30.9 6.1 25 523-547 119-143 (305)
225 PRK11415 hypothetical protein; 22.2 4.9E+02 0.011 22.1 7.5 67 464-551 3-69 (74)
226 PF13419 HAD_2: Haloacid dehal 22.1 66 0.0014 28.9 2.3 14 157-170 1-14 (176)
227 PRK11546 zraP zinc resistance 22.0 6.6E+02 0.014 24.3 9.0 28 523-550 91-118 (143)
228 COG0560 SerB Phosphoserine pho 21.9 58 0.0013 32.7 2.0 15 153-167 4-18 (212)
229 KOG3739 Stress-activated MAP k 21.8 97 0.0021 36.1 3.9 20 28-47 340-360 (634)
230 PRK09484 3-deoxy-D-manno-octul 21.7 47 0.001 32.1 1.3 17 152-168 19-35 (183)
231 PF10018 Med4: Vitamin-D-recep 21.5 3.2E+02 0.0069 27.0 7.0 9 573-581 89-97 (188)
232 PRK09552 mtnX 2-hydroxy-3-keto 21.4 48 0.001 32.6 1.3 31 425-457 151-181 (219)
233 COG3603 Uncharacterized conser 21.1 1.7E+02 0.0037 27.7 4.6 101 57-191 25-125 (128)
234 TIGR02137 HSK-PSP phosphoserin 21.0 37 0.0008 33.7 0.4 12 156-167 3-14 (203)
235 TIGR01533 lipo_e_P4 5'-nucleot 20.9 87 0.0019 32.9 3.1 36 327-362 120-155 (266)
236 PF13304 AAA_21: AAA domain; P 20.8 31 0.00067 32.0 -0.2 37 316-352 262-300 (303)
237 COG4308 LimA Limonene-1,2-epox 20.6 26 0.00056 33.0 -0.7 9 371-379 111-119 (130)
238 TIGR01116 ATPase-IIA1_Ca sarco 20.2 1.5E+02 0.0033 36.1 5.4 105 328-452 540-647 (917)
No 1
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=100.00 E-value=2.9e-133 Score=1077.40 Aligned_cols=408 Identities=42% Similarity=0.689 Sum_probs=339.5
Q ss_pred eEecCccccCCccEEEEecccceeecCccchHHHHHHHHHHHHHh-cCCCCCC--CCCCccccccceEeecCCCcEEeec
Q 007924 143 IFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRN-MGFPVEG--LAFDPDLVIRGLVIDKEKGNLVKAD 219 (585)
Q Consensus 143 IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~-~gYP~~~--L~yDp~F~iRGLv~D~~~GnLLKvD 219 (585)
|||||+|+|++|+|||||||||||+|++++++.|+|++++++||+ +|||+++ ++|||+|+|||||||+++|||||||
T Consensus 1 VF~Nr~l~l~~i~~iGFDmDyTLa~Y~~~~~~~L~y~~~~~~LV~~~gYP~~ll~~~~dp~F~iRGL~~D~~~GnlLKld 80 (448)
T PF05761_consen 1 VFVNRSLNLKDIDVIGFDMDYTLARYKSPELEELIYELARERLVEEKGYPEELLNLEYDPDFAIRGLVIDKERGNLLKLD 80 (448)
T ss_dssp -EESS-EECCC--EEEE-TBTTTBEE-CCHHHHHHHHHHHHHHHHHTT--GGGGG----CCC--TTEEEETTTTEEEEEB
T ss_pred CeeCCccccccCCEEEECcccchhhcCHHHHHHHHHHHHHHHHHhccCCCHHHhCCCCchhhhhcceeeEcccCeEEEEc
Confidence 899999999999999999999999999999999999999999997 9999885 5799999999999999999999999
Q ss_pred CCCcEEEEEeccccCchhHHHHHhcCccccccccccceehhcccchhHHHHHHHHHHHhh--hCCCCCCCCCCChHHHHH
Q 007924 220 RFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLD--EGAIGPELGPLDYKGLYK 297 (585)
Q Consensus 220 ~~g~I~~a~HG~~~Ls~eEi~e~Yg~~~i~l~~~~r~~~l~tlFslpEa~L~a~lVd~~d--~~~~~~~l~~~~y~~l~~ 297 (585)
++|+|++||||+++|+.+||.++||+++++.....+|.+++|+||+||+|||||+||++| .+.+. ++|..||+
T Consensus 81 ~~g~I~~a~hG~~~l~~eei~~~Y~~~~i~~~~~~~~~~l~tlFslpe~~L~a~lvd~~d~~~~~~~-----~~~~~l~~ 155 (448)
T PF05761_consen 81 RFGYILRAYHGFRPLSDEEIRELYGNKFIPLSDDSRFFQLNTLFSLPEAYLFAQLVDYFDVEDGNIE-----YDYRSLYQ 155 (448)
T ss_dssp TTSBEEEEEETTEEE-HHHHCCCCTTSB--TTSTTTEEEE-SCCHHHHHHHHHHHHHHHHECCTTCC-----EEHHHHHH
T ss_pred CCCcEEEEEeccccCCHHHHHHhcCCcccccchhhHHHHHhhHhhhhHHHHHHHHHHHhhcccCCCC-----CCHHHHHH
Confidence 999999999999999999999999999998876669999999999999999999999999 44432 88999999
Q ss_pred HHHHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCc
Q 007924 298 AVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLF 377 (585)
Q Consensus 298 DV~~Avd~vH~~G~lk~~i~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyF 377 (585)
||++||++||.+|.||++|++||+|||+|+|+++++|++||++||||||||||+|+|||.+|+|++|+++++++|||+||
T Consensus 156 DV~~Avd~~H~~G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlF 235 (448)
T PF05761_consen 156 DVRDAVDHVHRDGSLKREVKEDPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLF 235 (448)
T ss_dssp HHHHHHHHHHHCSCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCE
T ss_pred HHHHHHHHHhcchHHHHHHHHCHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCCCCCCCCCcEEeecCCCccccc---cccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhcccc
Q 007924 378 NMVIVSARKPEFFQMSHPLYEVVTGEGLMRPC---FKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVH 454 (585)
Q Consensus 378 DvVIv~A~KP~FF~~~~pf~~vd~~~g~l~~~---~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~ 454 (585)
|||||+|+||+||++++|||+|++++|.+.+. ..+++|+||+|||+.+|++++||+|++||||||||||||++||+.
T Consensus 236 DvVIv~A~KP~FF~~~~pfr~vd~~~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~ 315 (448)
T PF05761_consen 236 DVVIVDARKPGFFTEGRPFREVDTETGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKR 315 (448)
T ss_dssp CEEEES--CCHHHCT---EEEEETTTSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHH
T ss_pred eEEEEcCCCCcccCCCCceEEEECCCCccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccc
Confidence 99999999999999999999999999998753 479999999999999999999999999999999999999999999
Q ss_pred CCceEEeehHhhHHHHHHHHhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCchhhhcccCChHHHHHHHHHHH
Q 007924 455 LRWRTALICRELEEEYNALINSRGQRARLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTESMQKLL 534 (585)
Q Consensus 455 ~gWRT~aIVpELe~Ei~i~~~~~~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 534 (585)
+||||+|||||||+||++|...+..+++|+.| +.++++++++++.. ++.++++
T Consensus 316 ~gWrT~~Ii~ELe~Ei~~~~~~~~~~~~l~~L---~~~~~~~~~~~~~~------------------------~~~~~~~ 368 (448)
T PF05761_consen 316 HGWRTAAIIPELEQEIEIWNSKKYRFEELQEL---EELLEELQDHLDQL------------------------RSSSELR 368 (448)
T ss_dssp H-SEEEEE-TTHHHHHHHHHHTHHHHHHHHHH---HHHCHHHHCHHHHH------------------------HHHHHHH
T ss_pred cceEEEEEehhhhhhhhhhhhcchhhhHHHHH---HHHHHHHHHHhccc------------------------ccchhhH
Confidence 99999999999999999999888888888888 55555555544221 1334455
Q ss_pred HHHHHHHHhhhhhhhhhccccccccchhhccCCCCCChhhHHhhhhcCC
Q 007924 535 VVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDKSHLMRQIEKYAAL 583 (585)
Q Consensus 535 ~~~~~~d~~~~~~~~~~~~~Fn~~wG~lfRtG~~~~S~Fa~QveryAdl 583 (585)
..+++++++++++.++.++.|||+||||||||+ ++|+||+||||||||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~fn~~~GslfRtg~-~~s~Fa~qv~RyAdl 416 (448)
T PF05761_consen 369 PDISELRKERRELRREMKELFNPQFGSLFRTGH-NPSYFARQVERYADL 416 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-TTT-BSSEETT-EEBHHHHHHHHH-SE
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHhcCC-CccHHHHHHHHHhhh
Confidence 566777777888888889999999999999999 999999999999997
No 2
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3e-115 Score=892.98 Aligned_cols=439 Identities=29% Similarity=0.476 Sum_probs=389.7
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHHhhhhhCCCCCCCCCCCCCeeEecCccccCCccEEEEecccceeecCccchHHH
Q 007924 97 PVGIDGEAALDGPIEEVARMEAQEAEHLLNDFGIPSPSSARNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGR 176 (585)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L 176 (585)
..-++.|+..+-.+-...|+.+.+++ +.|.+|++.++.+||.+||+|++++|++|++||||||||||+|.+. ++.|
T Consensus 11 a~~l~e~~~~~~e~t~~~he~~~~~~---r~l~ip~~i~sllnp~aiy~nne~sl~dievygfdydytla~ys~h-lh~l 86 (510)
T KOG2470|consen 11 AVALPECSTVEDEITKIRHEFELAKQ---RFLNIPEAINSLLNPQAIYVNNELSLDDIEVYGFDYDYTLAHYSSH-LHSL 86 (510)
T ss_pred ccccccCCcchHHHHHHhhhhhhccc---cccCCCHHHHhccChhheeecCcccccceeEeccccchhHHHHHHH-HHHH
Confidence 34456666666666666555555444 5667999999999999999999999999999999999999999865 9999
Q ss_pred HHHHHHHHHH-hcCCCCCC--CCCCccccccceEeecCCCcEEeecCCCcEEE--EEeccccCchhHHHHHhcCcccccc
Q 007924 177 AYDYCMVNLR-NMGFPVEG--LAFDPDLVIRGLVIDKEKGNLVKADRFGYVKR--AMHGTTMLSNRAVSEMYGRELVDLR 251 (585)
Q Consensus 177 ~y~~~~~~Lv-~~gYP~~~--L~yDp~F~iRGLv~D~~~GnLLKvD~~g~I~~--a~HG~~~Ls~eEi~e~Yg~~~i~l~ 251 (585)
||+++++.|| ++.||+.+ ++|||+|+||||++|+++|.|||+|+||+|+. ||+|.++++++||.++||+.+|++.
T Consensus 87 if~~ard~lvn~frYPe~i~q~eYdPnFaIRGLhYDv~kglLmKlDaF~~iqlgt~YrGr~kv~~eEvi~mY~~rhipl~ 166 (510)
T KOG2470|consen 87 IFDLARDHLVNEFRYPEVIRQYEYDPNFAIRGLHYDVQKGLLMKLDAFHYIQLGTVYRGRRKVPDEEVIEMYGGRHIPLD 166 (510)
T ss_pred HHHHHHHHHHHhccChHHhhhcccCCCcccchhhhHhhhhhheeeccceeeccCceeecCccCCHHHHHHHhcCCccCHH
Confidence 9999999998 49999875 58999999999999999999999999999994 9999999999999999999999976
Q ss_pred c-------cccceehhcccchhHHHHHHHHHHHhhhCCCCCCCCCCChHHHHHHHHHHHHhccchhhhHHHHHcCccccc
Q 007924 252 K-------ESRWEFLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFV 324 (585)
Q Consensus 252 ~-------~~r~~~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y~~l~~DV~~Avd~vH~~G~lk~~i~~npekYI 324 (585)
+ ++.+.+|+|+||+|||||++|+|+||..+.++ +++..+|+||++|+..||+.|.+ +|.+|+||||
T Consensus 167 q~~g~~~k~~~mvqlmDiFs~pEmcLls~vveYF~~~~le-----fd~~~ly~Dv~~ai~~vH~~~~~--~i~~~~ekyi 239 (510)
T KOG2470|consen 167 QMSGFYGKGSKMVQLMDIFSLPEMCLLSCVVEYFLDNKLE-----FDPSHLYKDVNDAIRDVHRKGHM--KIESDLEKYI 239 (510)
T ss_pred HhcCccCCCchHHHHHHHhccHHHHHHHHHHHHHHhcccc-----CCHHHHHHhHHHHHHHhhhhhhH--HHhhchHHHh
Confidence 5 34578999999999999999999999988775 88999999999999999999998 8999999999
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCC-CCCcEEeecCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQM-SHPLYEVVTGE 403 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~-~~pf~~vd~~~ 403 (585)
+++|++..+|.+|+++|||+||||||||+|+|++|+|++| +|||++||||||+|+||.||++ .+|||..|..+
T Consensus 240 ~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG------~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~ 313 (510)
T KOG2470|consen 240 ERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVG------DDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKR 313 (510)
T ss_pred hccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeC------ccHHhhhheeEEecCCCcccccccCcchhhcccc
Confidence 9999999999999999999999999999999999999995 8999999999999999999996 56999999888
Q ss_pred Cccc--cccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHhhHHHHHHHHhchhHHH
Q 007924 404 GLMR--PCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYNALINSRGQRA 481 (585)
Q Consensus 404 g~l~--~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe~Ei~i~~~~~~~~~ 481 (585)
|.+. .+.+|++|+||.+||+.+|.+++||+|++|||||||+|||++++...+||||+|||||||+||+++ |..+++.
T Consensus 314 ~sl~wdkv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~EL~~Eiki~-N~e~y~~ 392 (510)
T KOG2470|consen 314 GSLLWDKVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPELEREIKIQ-NTEQYRF 392 (510)
T ss_pred cchhhhhhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchHHHHHHHhhc-cHHHHHH
Confidence 8765 478999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhccCCCchhhhcccCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccch
Q 007924 482 RLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTESMQKLLVVMQRLDQKIAPMLESDGELFNKRWGF 561 (585)
Q Consensus 482 ~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~Fn~~wG~ 561 (585)
...||..+..+|++... + .+..+|++..+|++|++ ++|. ..+++||.+||+
T Consensus 393 s~~w~q~lt~Ller~q~------~---rseasq~~L~ew~~eRq------~lR~--------------~tK~~FN~qFGs 443 (510)
T KOG2470|consen 393 SQTWLQILTGLLERMQA------Q---RSEASQSVLDEWMKERQ------ELRD--------------TTKQMFNAQFGS 443 (510)
T ss_pred HHHHHHHHHHHHHHHHh------h---hhHHHHHHHHHHHHHHH------HHHH--------------HHHHHHHHhhcc
Confidence 99999777777777632 1 22335555544443332 2222 236789999999
Q ss_pred hhccCCCCCChhhHHhhhhcCC
Q 007924 562 LSRAGLWDKSHLMRQIEKYAAL 583 (585)
Q Consensus 562 lfRtG~~~~S~Fa~QveryAdl 583 (585)
+|||.+ ++|+|+|++.|||||
T Consensus 444 ~FrT~~-nptyFsrrl~rfaDi 464 (510)
T KOG2470|consen 444 TFRTDH-NPTYFSRRLHRFADI 464 (510)
T ss_pred eeeccC-CccHHHHHHHHHHHH
Confidence 999999 799999999999997
No 3
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=100.00 E-value=1.6e-107 Score=852.43 Aligned_cols=337 Identities=44% Similarity=0.723 Sum_probs=318.8
Q ss_pred eEecCccccCCccEEEEecccceeecCccchHHHHHHHHHHHHHh-cCCCCCC--CCCCccccccceEeecCCCcEEeec
Q 007924 143 IFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRN-MGFPVEG--LAFDPDLVIRGLVIDKEKGNLVKAD 219 (585)
Q Consensus 143 IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~-~gYP~~~--L~yDp~F~iRGLv~D~~~GnLLKvD 219 (585)
|||||+|+|++|+|||||||||||+|+++++|.|||++++++||+ +|||+++ ++|||+|+||||++|+++|||||||
T Consensus 1 if~nr~l~l~~i~~~GFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYp~~l~~~~~d~~f~iRGL~~D~~~GnllKld 80 (343)
T TIGR02244 1 VFVNRELNLEKIQVFGFDMDYTLAQYKSPELEALIYDLAKERLVKRFGYPEELLSFAYDPTFAIRGLVFDKLKGNLLKLD 80 (343)
T ss_pred CeeCCccccccCCEEEECccccccccChHHHHHHHHHHHHHHHHHhcCCChHHhCCcCCCcccccceeeEcccCeEEEEc
Confidence 899999999999999999999999999999999999999999997 6999875 4799999999999999999999999
Q ss_pred CCCcEEEEEeccccCchhHHHHHhcCccccccccccceehhcccchhHHHHHHHHHHHhhhCCCCCCCCCCChHHHHHHH
Q 007924 220 RFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAV 299 (585)
Q Consensus 220 ~~g~I~~a~HG~~~Ls~eEi~e~Yg~~~i~l~~~~r~~~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y~~l~~DV 299 (585)
++|+|++|+||+++|+.+||.++||+++++..+.++|+++||+|||||||||||+||+||+... ++. +++|.+||+||
T Consensus 81 ~~g~I~~~~hG~~~l~~~e~~~~Y~~~~~~~~~~~~~~~l~tlF~lpe~~L~a~lvd~~~~~~~-~~~-~~~~~~~~~dv 158 (343)
T TIGR02244 81 RFGNILRGYHGLRPLSDKEVQEIYGNKYISRSNGDRYYLLDTLFSLPEACLIAQLVDYFDDHPK-GPL-AFDYRQIYQDV 158 (343)
T ss_pred CCCcEEEEecCCccCCHHHHHHHcCccccCCCCCccEEEecccccchHHHHHHHHHHHHhcccc-CCC-CCCHHHHHHHH
Confidence 9999999999999999999999999999987766799999999999999999999999997642 122 37999999999
Q ss_pred HHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccE
Q 007924 300 GKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNM 379 (585)
Q Consensus 300 ~~Avd~vH~~G~lk~~i~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDv 379 (585)
++||++||.+|.||++|++||++||+++|.++.+|.+|+++|+|+||+|||+++||+.+|+|++|+++ ++++|++|||+
T Consensus 159 ~~av~~~h~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~-~~~~w~~yFD~ 237 (343)
T TIGR02244 159 RDALDWVHRKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFL-GEHDWRDYFDV 237 (343)
T ss_pred HHHHHHhcccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcc-cccchHhhCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999987766 67899999999
Q ss_pred EEEccCCCCCCCCCCCcEEeecCCCccccc--cccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCc
Q 007924 380 VIVSARKPEFFQMSHPLYEVVTGEGLMRPC--FKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRW 457 (585)
Q Consensus 380 VIv~A~KP~FF~~~~pf~~vd~~~g~l~~~--~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gW 457 (585)
||++|+||+||++++|||+|++++|.+++. ..+++|+||+||||.+|++++||++++|||||||||+||+.+||.+||
T Consensus 238 IIt~a~KP~FF~~~~pf~~v~~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw 317 (343)
T TIGR02244 238 VIVDARKPGFFTEGRPFRQVDVETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGW 317 (343)
T ss_pred EEeCCCCCcccCCCCceEEEeCCCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCc
Confidence 999999999999999999999999988753 238999999999999999999999999999999999999999999999
Q ss_pred eEEeehHhhHHHHHHHHhchhHHHH
Q 007924 458 RTALICRELEEEYNALINSRGQRAR 482 (585)
Q Consensus 458 RT~aIVpELe~Ei~i~~~~~~~~~~ 482 (585)
||++|+||||+|+++|+++++++++
T Consensus 318 ~TvlI~pEL~~E~~~~~~~~~~~~~ 342 (343)
T TIGR02244 318 RTAAIIPELEQEVGILTNSKSLREE 342 (343)
T ss_pred EEEEEchhHHHHHHHHhhchhhhhc
Confidence 9999999999999999888887654
No 4
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.6e-105 Score=834.31 Aligned_cols=409 Identities=43% Similarity=0.688 Sum_probs=376.9
Q ss_pred CCCCCCCeeEecCccccCCccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCCCCCC--CCCccccccceEeecCC
Q 007924 135 SARNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPVEGL--AFDPDLVIRGLVIDKEK 212 (585)
Q Consensus 135 ~~~~~~~~IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~~~L--~yDp~F~iRGLv~D~~~ 212 (585)
..+..+++|||||+|+|++|.+|||||||||++|+.+++|.|||+++.+.|++.|||.+++ .|||+|++|||++|.++
T Consensus 8 ~~r~~~~~if~~rsl~l~~i~~~GfdmDyTL~~Y~~~~~esLay~~~~~~l~~~Gyp~~ll~~~~d~~f~~rGL~ld~~~ 87 (424)
T KOG2469|consen 8 DGRDVPHRIFCNRSLNLENIGIVGFDMDYTLARYNLPEMESLAYDLAQFLLKDKGYPNELLSTSFDWNFPCRGLVLDKER 87 (424)
T ss_pred cccccchheehhhhhhhhcCcEEeeccccchhhhcccchHHHHHHHHHHHHHhcCChhhhhccccCccceeeeeEEeccC
Confidence 4567888899999999999999999999999999999999999997777788999997654 69999999999999999
Q ss_pred CcEEeecCCCcEEEEEeccccCchhHHHHHhcCccccccccccceehhcccchhHHHHHHHHHHHhhhCCCCCCCCCCCh
Q 007924 213 GNLVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDY 292 (585)
Q Consensus 213 GnLLKvD~~g~I~~a~HG~~~Ls~eEi~e~Yg~~~i~l~~~~r~~~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y 292 (585)
||+||+|++|+|++|+||+++++.+|+.++||++.+++.+ ++|+.++|+|++||+.++||+||++|.+...+... ++|
T Consensus 88 GN~lKld~~~~vl~a~hg~rfls~~~~~eiyg~~~~~~~~-~~~~~l~t~F~~~ea~~~aq~vd~~d~~~~~~~~~-~dy 165 (424)
T KOG2469|consen 88 GNLLKLDRFGYVLRAAHGTRFLSNEEISEIYGRKLVRLSD-SRYYLLNTLFSMPEADLFAQAVDFLDNGPEYGPVD-MDY 165 (424)
T ss_pred CceeeeeccCceeeeccccccccccchhhhcccccccccC-chhhhhhhhhhchhHHHHHhhcchhhcCCccCccc-hhh
Confidence 9999999999999999999999999999999999999888 99999999999999999999999999998775544 899
Q ss_pred HHHHHHHHHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCC
Q 007924 293 KGLYKAVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMG 372 (585)
Q Consensus 293 ~~l~~DV~~Avd~vH~~G~lk~~i~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~d 372 (585)
+.+|+||++|+++||.+|.+|++++++|||||++++.+|++|.++|++|||+||+|||+|+|||.+|+++++ .|
T Consensus 166 k~~~~~v~~~~~~~h~~~~lk~~~~~~pek~V~~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~------~d 239 (424)
T KOG2469|consen 166 KPGWKDVRAAGNAVHLYGLLKKKMMGKPERYVVYDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYG------FD 239 (424)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhcCCCceeeecCccccchHHHHhhccceEEeeccccchhhHHHHHHhC------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 79
Q ss_pred CCCCccEEEEccCCCCCCCCCCCcEEeecCCCcccc---ccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchh
Q 007924 373 WRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRP---CFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVS 449 (585)
Q Consensus 373 WrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l~~---~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl 449 (585)
|+.|||+|||.|+||+||.+++++|+|+|++|++++ +.++++|++|+||+++.++.+++.+|++|||+|||||+||+
T Consensus 240 W~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl 319 (424)
T KOG2469|consen 240 WETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVL 319 (424)
T ss_pred cceeEEEEEEeccCCccccccceeeeeccccccccccccCCcchhcccCCcchHHHHHHHhcccccceeecccceeeeEE
Confidence 999999999999999999999999999999999986 56789999999999999999999999999999999999999
Q ss_pred hccccCCceEEeehHhhHHHHHHHHhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCchhhhcccCChHHHHHH
Q 007924 450 QSKVHLRWRTALICRELEEEYNALINSRGQRARLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTES 529 (585)
Q Consensus 450 ~sKk~~gWRT~aIVpELe~Ei~i~~~~~~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (585)
.|||+.||||++|||||+.|..+|..+++ ++.+|.+....++|+|++|+.++++.....+. .++
T Consensus 320 ~skk~~~wrt~lv~peL~~e~~v~~~~ke---~~~el~~~~~~laDiy~~l~~s~~s~~~~~~~-------------~r~ 383 (424)
T KOG2469|consen 320 VSKKRRGWRTVLVAPELEREDLVLLDSKE---EFIELLNWSSKLADIYPNLDLSLLSAPKDLSI-------------KRD 383 (424)
T ss_pred ecceecceEEEEEehhhhhhhhhhccchH---HHHHHhccchhhHhhccCCchhhhhcccccch-------------hHH
Confidence 99999999999999999999999988774 67777777999999999998877765443332 233
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccccccccchhhccCCCCCChhhHHhhhhcCC
Q 007924 530 MQKLLVVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDKSHLMRQIEKYAAL 583 (585)
Q Consensus 530 ~~~l~~~~~~~d~~~~~~~~~~~~~Fn~~wG~lfRtG~~~~S~Fa~QveryAdl 583 (585)
+++++.. .+.||-.||++||||+ |.|+||.|++|||||
T Consensus 384 ~~~~~~~---------------~dk~~~~~~sl~~s~~-~~t~~a~q~~r~A~~ 421 (424)
T KOG2469|consen 384 IQKLTEC---------------MDKFYGVWGSLFRTGY-QRTRFALQVERYADL 421 (424)
T ss_pred HHHHHHh---------------HHHHhcchHHhhcccc-ccchHHHHHHHHHHH
Confidence 3332222 3357889999999999 999999999999997
No 5
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.05 E-value=3e-09 Score=102.99 Aligned_cols=105 Identities=25% Similarity=0.381 Sum_probs=81.8
Q ss_pred ccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecC
Q 007924 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (585)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~ 402 (585)
++...|.+..+|..|+++|.++.++||++-.++...++.+ +|.+|||.|++....
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~~---------------- 146 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL---------GVRDFFDAVITSEEE---------------- 146 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC---------ChHHhccEEEEeccC----------------
Confidence 4566789999999999999999999999998888877754 499999999875421
Q ss_pred CCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
|..+| ...+ .....+.+|...++++||||++..||..+++ .||+|++|-.
T Consensus 147 -~~~KP-----~~~~-----~~~~~~~~~~~~~~~~~igDs~~~di~~A~~-aG~~~i~~~~ 196 (221)
T TIGR02253 147 -GVEKP-----HPKI-----FYAALKRLGVKPEEAVMVGDRLDKDIKGAKN-LGMKTVWINQ 196 (221)
T ss_pred -CCCCC-----CHHH-----HHHHHHHcCCChhhEEEECCChHHHHHHHHH-CCCEEEEECC
Confidence 11111 0112 3456667788889999999999999998886 5999999854
No 6
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.78 E-value=9e-08 Score=95.57 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=75.1
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCc-cEEEEccCCCCCCCCCCCcEEeecC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLF-NMVIVSARKPEFFQMSHPLYEVVTG 402 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyF-DvVIv~A~KP~FF~~~~pf~~vd~~ 402 (585)
+..-|....+|..|+++|.++.++||+.-..++.+++.+ .+.++| |.||+...-+
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~---------gl~~~f~d~ii~~~~~~--------------- 153 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA---------ALQGYRPDYNVTTDDVP--------------- 153 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH---------HhcCCCCceEEccccCC---------------
Confidence 445688999999999999999999999999999988765 266775 8887643210
Q ss_pred CCccccccccCCCccccCCCHHHHHHHhCCC-CCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
.-+| ...+| ....+.+|.. ..+++||||.. .||..++. .|++|++|.
T Consensus 154 --~~KP-----~p~~~-----~~a~~~l~~~~~~~~l~IGDs~-~Di~aA~~-aGi~~i~v~ 201 (253)
T TIGR01422 154 --AGRP-----APWMA-----LKNAIELGVYDVAACVKVGDTV-PDIEEGRN-AGMWTVGLI 201 (253)
T ss_pred --CCCC-----CHHHH-----HHHHHHcCCCCchheEEECCcH-HHHHHHHH-CCCeEEEEe
Confidence 0011 01122 2345556764 67899999998 99998885 699999995
No 7
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.77 E-value=1.2e-07 Score=92.21 Aligned_cols=101 Identities=21% Similarity=0.203 Sum_probs=76.6
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
..-|....+|..|+++|.++.++||+.-.++...+..+ +|.+|||.|++...-+
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~---------gl~~~f~~i~~~~~~~----------------- 135 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT---------GLDEFFDVVITLDDVE----------------- 135 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CChhceeEEEecCcCC-----------------
Confidence 34588899999999999999999999999999888765 4999999998633210
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
.-+| ++.. ...+.+.+|...++++||||+. .||..++. .|+++++|-
T Consensus 136 ~~Kp-----~p~~-----~~~~~~~~~~~~~~~~~iGDs~-~Di~aa~~-aG~~~i~v~ 182 (214)
T PRK13288 136 HAKP-----DPEP-----VLKALELLGAKPEEALMVGDNH-HDILAGKN-AGTKTAGVA 182 (214)
T ss_pred CCCC-----CcHH-----HHHHHHHcCCCHHHEEEECCCH-HHHHHHHH-CCCeEEEEc
Confidence 0011 1112 2345666788888999999997 89998886 599999884
No 8
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.75 E-value=1.1e-07 Score=96.93 Aligned_cols=101 Identities=11% Similarity=0.216 Sum_probs=78.1
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
..-|.+..+|..|+++|.++.++||+...++..++.++ .|.+|||.||+...-. .+
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~---------gl~~~Fd~ii~~~d~~---------------~~ 164 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV---------GMEGFFSVVLAAEDVY---------------RG 164 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc---------CCHhhCcEEEecccCC---------------CC
Confidence 34588999999999999999999999999999999876 3999999999864210 00
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
+| ...+| ....+.+|....+++||||.. .||..++. .||++++|-
T Consensus 165 --KP-----~Pe~~-----~~a~~~l~~~p~~~l~IgDs~-~Di~aA~~-aG~~~i~v~ 209 (260)
T PLN03243 165 --KP-----DPEMF-----MYAAERLGFIPERCIVFGNSN-SSVEAAHD-GCMKCVAVA 209 (260)
T ss_pred --CC-----CHHHH-----HHHHHHhCCChHHeEEEcCCH-HHHHHHHH-cCCEEEEEe
Confidence 11 01122 355667788889999999995 68888775 699999885
No 9
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.61 E-value=1.4e-06 Score=85.31 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=79.1
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
..-|.+..+|..|++.|.++.++||+.-..+..+++++ .+.++||.|++...- . .+
T Consensus 92 ~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~----~-----------~~ 147 (222)
T PRK10826 92 PLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF---------DLRDYFDALASAEKL----P-----------YS 147 (222)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC---------cchhcccEEEEcccC----C-----------CC
Confidence 34488999999999999999999999999999988875 389999998866311 0 01
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHh
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpE 465 (585)
+| ++.+ ...+.+.+|....+++||||+. .||...+. .|+++++|-..
T Consensus 148 --Kp-----~~~~-----~~~~~~~~~~~~~~~~~igDs~-~Di~aA~~-aG~~~i~v~~~ 194 (222)
T PRK10826 148 --KP-----HPEV-----YLNCAAKLGVDPLTCVALEDSF-NGMIAAKA-ARMRSIVVPAP 194 (222)
T ss_pred --CC-----CHHH-----HHHHHHHcCCCHHHeEEEcCCh-hhHHHHHH-cCCEEEEecCC
Confidence 11 0112 2456777888889999999998 79998885 69999998643
No 10
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.59 E-value=1.4e-06 Score=84.35 Aligned_cols=102 Identities=21% Similarity=0.310 Sum_probs=75.6
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
...-|.+..+|..++++|.++.++||+.-.+...++..+ .|.++||.|++...-
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~----------------- 145 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL---------GIADYFSVVIGGDSL----------------- 145 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CCccCccEEEcCCCC-----------------
Confidence 345688999999999999999999999999988888755 378899987653210
Q ss_pred CccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
+..++ + ........+.++....+++||||.. .|+...+. .||.|++|.
T Consensus 146 ~~~kp-----~-----~~~~~~~~~~~~~~~~~~i~igD~~-~Di~~a~~-~g~~~i~v~ 193 (226)
T PRK13222 146 PNKKP-----D-----PAPLLLACEKLGLDPEEMLFVGDSR-NDIQAARA-AGCPSVGVT 193 (226)
T ss_pred CCCCc-----C-----hHHHHHHHHHcCCChhheEEECCCH-HHHHHHHH-CCCcEEEEC
Confidence 00011 0 1113345566677788999999995 89998886 699999985
No 11
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.59 E-value=9e-07 Score=89.48 Aligned_cols=103 Identities=13% Similarity=0.049 Sum_probs=73.4
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCC-ccEEEEccCCCCCCCCCCCcEEeecC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDL-FNMVIVSARKPEFFQMSHPLYEVVTG 402 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdy-FDvVIv~A~KP~FF~~~~pf~~vd~~ 402 (585)
+..-|....+|..|+++|.++.++||+.-..++.+++.+ .+.++ ||.||+...-
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~---------~l~~~~~d~i~~~~~~---------------- 154 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLA---------AAQGYRPDHVVTTDDV---------------- 154 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH---------hhcCCCceEEEcCCcC----------------
Confidence 344588999999999999999999999999998888754 14455 4877654321
Q ss_pred CCccccccccCCCccccCCCHHHHHHHhCCC-CCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
+..+| ...+| ....+.+|.. ..+++||||.. .||..++. .|++|++|..
T Consensus 155 -~~~KP-----~p~~~-----~~a~~~l~~~~~~e~l~IGDs~-~Di~aA~~-aG~~~i~v~~ 204 (267)
T PRK13478 155 -PAGRP-----YPWMA-----LKNAIELGVYDVAACVKVDDTV-PGIEEGLN-AGMWTVGVIL 204 (267)
T ss_pred -CCCCC-----ChHHH-----HHHHHHcCCCCCcceEEEcCcH-HHHHHHHH-CCCEEEEEcc
Confidence 00011 01122 3455556775 47899999998 89998886 6999999964
No 12
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.58 E-value=8.6e-07 Score=86.18 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=76.0
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCC--CCccEEEEccCCCCCCCCCCCcEEeecC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWR--DLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWr--dyFDvVIv~A~KP~FF~~~~pf~~vd~~ 402 (585)
..-|....+|..|+++|.++.++||+.-.++..++..+ .|. +|||.|++...-.
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~---------~l~~~~~f~~i~~~~~~~--------------- 142 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL---------GWTVGDDVDAVVCPSDVA--------------- 142 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh---------hhhhhccCCEEEcCCcCC---------------
Confidence 34578899999999999999999999999999999865 266 9999999874421
Q ss_pred CCccccccccCCCccccCCCHHHHHHHhCCC-CCcEEEEcCccccchhhccccCCceE-EeehH
Q 007924 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRT-ALICR 464 (585)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIygDIl~sKk~~gWRT-~aIVp 464 (585)
.+ +| ...+ .....+.+|.. ..+++||||.. .||..++. .||+| +++..
T Consensus 143 ~~--KP-----~p~~-----~~~a~~~~~~~~~~~~~~igD~~-~Di~aa~~-aG~~~~i~~~~ 192 (220)
T TIGR03351 143 AG--RP-----APDL-----ILRAMELTGVQDVQSVAVAGDTP-NDLEAGIN-AGAGAVVGVLT 192 (220)
T ss_pred CC--CC-----CHHH-----HHHHHHHcCCCChhHeEEeCCCH-HHHHHHHH-CCCCeEEEEec
Confidence 01 11 0111 12344556776 57999999997 79988875 69999 77754
No 13
>PLN02940 riboflavin kinase
Probab=98.55 E-value=1.5e-06 Score=93.27 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=76.0
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
.-|.+..+|..|+++|.++.++||+.-.+++..+.-.+ .|.+|||.|++...- +.
T Consensus 94 l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~--------gl~~~Fd~ii~~d~v-----------------~~ 148 (382)
T PLN02940 94 ALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQ--------GWKESFSVIVGGDEV-----------------EK 148 (382)
T ss_pred CCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcc--------ChHhhCCEEEehhhc-----------------CC
Confidence 34889999999999999999999999999888776322 499999999885421 00
Q ss_pred cccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
.+| +..+ .....+.+|....++++|||.. .||..++. .|+++++|-
T Consensus 149 ~KP-----~p~~-----~~~a~~~lgv~p~~~l~VGDs~-~Di~aA~~-aGi~~I~v~ 194 (382)
T PLN02940 149 GKP-----SPDI-----FLEAAKRLNVEPSNCLVIEDSL-PGVMAGKA-AGMEVIAVP 194 (382)
T ss_pred CCC-----CHHH-----HHHHHHHcCCChhHEEEEeCCH-HHHHHHHH-cCCEEEEEC
Confidence 011 0112 2345666788889999999997 59888775 699999985
No 14
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.49 E-value=2.3e-06 Score=92.33 Aligned_cols=100 Identities=11% Similarity=0.178 Sum_probs=76.8
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCcc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLM 406 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l 406 (585)
-|.+..+|..|+++|.++.++||++-.+++..+..+ .|.+|||.||+..... .+
T Consensus 218 ~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l---------gL~~yFd~Iv~sddv~---------------~~-- 271 (381)
T PLN02575 218 RTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI---------GIRGFFSVIVAAEDVY---------------RG-- 271 (381)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CCHHHceEEEecCcCC---------------CC--
Confidence 478899999999999999999999999999998865 3999999998864321 00
Q ss_pred ccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 407 RPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 407 ~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
+| ...+| ....+.+|...++++||||.. .||..++. .||++++|..
T Consensus 272 KP-----~Peif-----l~A~~~lgl~Peecl~IGDS~-~DIeAAk~-AGm~~IgV~~ 317 (381)
T PLN02575 272 KP-----DPEMF-----IYAAQLLNFIPERCIVFGNSN-QTVEAAHD-ARMKCVAVAS 317 (381)
T ss_pred CC-----CHHHH-----HHHHHHcCCCcccEEEEcCCH-HHHHHHHH-cCCEEEEECC
Confidence 11 01122 235556788889999999987 58777764 6999999974
No 15
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.47 E-value=2.6e-06 Score=82.51 Aligned_cols=107 Identities=20% Similarity=0.238 Sum_probs=73.4
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEcc----CCCCCCCCCCCcEEeec
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA----RKPEFFQMSHPLYEVVT 401 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A----~KP~FF~~~~pf~~vd~ 401 (585)
..|.+..+|..|+++|.++.++||+............ ...+.++||.|++.. +||.
T Consensus 95 ~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~-------~~~l~~~fd~v~~s~~~~~~KP~------------- 154 (211)
T TIGR02247 95 LRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALL-------PGDIMALFDAVVESCLEGLRKPD------------- 154 (211)
T ss_pred cChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhh-------hhhhHhhCCEEEEeeecCCCCCC-------------
Confidence 3577889999999999999999999765432222111 124889999998542 2331
Q ss_pred CCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehH--hhHHHHHH
Q 007924 402 GEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR--ELEEEYNA 472 (585)
Q Consensus 402 ~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp--ELe~Ei~i 472 (585)
..+| ....+.+|....+++||||. ..||..++. .||.|++|.+ ++.+++..
T Consensus 155 -------------p~~~-----~~~~~~~g~~~~~~l~i~D~-~~di~aA~~-aG~~~i~v~~~~~~~~~l~~ 207 (211)
T TIGR02247 155 -------------PRIY-----QLMLERLGVAPEECVFLDDL-GSNLKPAAA-LGITTIKVSDEEQAIHDLEK 207 (211)
T ss_pred -------------HHHH-----HHHHHHcCCCHHHeEEEcCC-HHHHHHHHH-cCCEEEEECCHHHHHHHHHH
Confidence 1122 34566678888999999875 668888875 6999999863 34444443
No 16
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.46 E-value=2.6e-06 Score=87.60 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=78.0
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
+..-|....+|..|+++|.++.++||+.-.+++.+++.+ .|.+|||.|++....+ +
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~---------gl~~~F~~vi~~~~~~-------~-------- 196 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ---------GLRSLFSVVQAGTPIL-------S-------- 196 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CChhheEEEEecCCCC-------C--------
Confidence 345688999999999999999999999999999999865 3899999887642110 0
Q ss_pred CccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHh
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpE 465 (585)
+..+ ...+.+.++....+++||||.+ .||..++. .||+|++|.-.
T Consensus 197 ----------k~~~-----~~~~l~~~~~~p~~~l~IGDs~-~Di~aA~~-AG~~~I~v~~g 241 (273)
T PRK13225 197 ----------KRRA-----LSQLVAREGWQPAAVMYVGDET-RDVEAARQ-VGLIAVAVTWG 241 (273)
T ss_pred ----------CHHH-----HHHHHHHhCcChhHEEEECCCH-HHHHHHHH-CCCeEEEEecC
Confidence 0011 2345566688888999999996 69998886 79999998643
No 17
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.45 E-value=4.6e-06 Score=78.87 Aligned_cols=93 Identities=10% Similarity=0.135 Sum_probs=67.3
Q ss_pred hHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCcccccc
Q 007924 331 PLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCF 410 (585)
Q Consensus 331 ~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l~~~~ 410 (585)
..+|..|++. .++.++||+.-.+++..++.+ .|.+|||.|++...- +..+|
T Consensus 93 ~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~---------~l~~~fd~i~~~~~~-----------------~~~KP-- 143 (188)
T PRK10725 93 IEVVKAWHGR-RPMAVGTGSESAIAEALLAHL---------GLRRYFDAVVAADDV-----------------QHHKP-- 143 (188)
T ss_pred HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC---------CcHhHceEEEehhhc-----------------cCCCC--
Confidence 5778888765 789999999999999988875 399999998875321 00011
Q ss_pred ccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEee
Q 007924 411 KARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 411 ~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
...+ .....+.+|....+++||||. ..||..++. .||+|++|
T Consensus 144 ---~p~~-----~~~~~~~~~~~~~~~l~igDs-~~di~aA~~-aG~~~i~~ 185 (188)
T PRK10725 144 ---APDT-----FLRCAQLMGVQPTQCVVFEDA-DFGIQAARA-AGMDAVDV 185 (188)
T ss_pred ---ChHH-----HHHHHHHcCCCHHHeEEEecc-HhhHHHHHH-CCCEEEee
Confidence 0011 123445567777899999997 889988875 69999987
No 18
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.41 E-value=5.7e-06 Score=80.69 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=69.6
Q ss_pred ccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCcc-EEEEccCCCCCCCCCCCcEEeec
Q 007924 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFN-MVIVSARKPEFFQMSHPLYEVVT 401 (585)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFD-vVIv~A~KP~FF~~~~pf~~vd~ 401 (585)
.+...|.+..+|..| +.++.++||+.-.+++..+..+ +..++|| +|++...-
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~---------~l~~~F~~~v~~~~~~--------------- 138 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKT---------GMLHYFPDKLFSGYDI--------------- 138 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhc---------ChHHhCcceEeeHHhc---------------
Confidence 345568888899888 4789999999999998887644 4788996 55543210
Q ss_pred CCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 402 GEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 402 ~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
|..+| ++.+| ....+.+|....+++||||.. .||..++ ..|++|+++.
T Consensus 139 --~~~KP-----~p~~~-----~~a~~~~~~~p~~~l~igDs~-~di~aA~-~aG~~~i~~~ 186 (221)
T PRK10563 139 --QRWKP-----DPALM-----FHAAEAMNVNVENCILVDDSS-AGAQSGI-AAGMEVFYFC 186 (221)
T ss_pred --CCCCC-----ChHHH-----HHHHHHcCCCHHHeEEEeCcH-hhHHHHH-HCCCEEEEEC
Confidence 10111 01122 244556778778999999998 6988777 5799999875
No 19
>PRK11587 putative phosphatase; Provisional
Probab=98.34 E-value=2e-05 Score=77.18 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=68.6
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
..-|....+|..|+++|.++.++||+...++....... .+ .+||.|++...- +
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~---------~l-~~~~~i~~~~~~-----------------~ 135 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA---------GL-PAPEVFVTAERV-----------------K 135 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc---------CC-CCccEEEEHHHh-----------------c
Confidence 34588899999999999999999999988776655432 13 457776653100 0
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
..+| ...+| ....+.+|....+++||||+. .||..++ ..|+.|++|-
T Consensus 136 ~~KP-----~p~~~-----~~~~~~~g~~p~~~l~igDs~-~di~aA~-~aG~~~i~v~ 182 (218)
T PRK11587 136 RGKP-----EPDAY-----LLGAQLLGLAPQECVVVEDAP-AGVLSGL-AAGCHVIAVN 182 (218)
T ss_pred CCCC-----CcHHH-----HHHHHHcCCCcccEEEEecch-hhhHHHH-HCCCEEEEEC
Confidence 0011 01122 234556788889999999995 6887776 4699999984
No 20
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.31 E-value=1e-06 Score=80.08 Aligned_cols=103 Identities=24% Similarity=0.362 Sum_probs=82.4
Q ss_pred cccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeec
Q 007924 322 LFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVT 401 (585)
Q Consensus 322 kYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~ 401 (585)
..+...|.+..+|.+|+++|.++.++||++-.++...++.+ .|.++||.|++....+.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~---------~~~~~f~~i~~~~~~~~------------- 131 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL---------GLDDYFDEIISSDDVGS------------- 131 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT---------THGGGCSEEEEGGGSSS-------------
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCccccccccccc---------ccccccccccccchhhh-------------
Confidence 66778899999999999999999999999999998888876 37799999998754221
Q ss_pred CCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEee
Q 007924 402 GEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 402 ~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
.+| ...+ ...+.+-+|+...++++|||+. .||..++. .||+|+.|
T Consensus 132 ----~Kp-----~~~~-----~~~~~~~~~~~p~~~~~vgD~~-~d~~~A~~-~G~~~i~v 176 (176)
T PF13419_consen 132 ----RKP-----DPDA-----YRRALEKLGIPPEEILFVGDSP-SDVEAAKE-AGIKTIWV 176 (176)
T ss_dssp ----STT-----SHHH-----HHHHHHHHTSSGGGEEEEESSH-HHHHHHHH-TTSEEEEE
T ss_pred ----hhh-----HHHH-----HHHHHHHcCCCcceEEEEeCCH-HHHHHHHH-cCCeEEeC
Confidence 111 0112 3456666799999999999999 99998885 69999986
No 21
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.25 E-value=4.7e-06 Score=77.69 Aligned_cols=100 Identities=30% Similarity=0.451 Sum_probs=72.5
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
+...|.+..+|.+|++.|.++.++||+.... ...... + ++.++||.||+... .
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~-~--------~l~~~f~~i~~~~~-----------------~ 136 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQE-L--------GLRDLFDVVIFSGD-----------------V 136 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHh-c--------CCHHHCCEEEEcCC-----------------C
Confidence 5667899999999999999999999999988 443332 2 37789999987521 0
Q ss_pred CccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEee
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
|..+| ...+ ...+.+.+|...++++||||+. .||..+++ .||+|++|
T Consensus 137 ~~~KP-----~~~~-----~~~~~~~~~~~~~~~~~vgD~~-~di~aA~~-~G~~~i~v 183 (183)
T TIGR01509 137 GRGKP-----DPDI-----YLLALKKLGLKPEECLFVDDSP-AGIEAAKA-AGMHTVLV 183 (183)
T ss_pred CCCCC-----CHHH-----HHHHHHHcCCCcceEEEEcCCH-HHHHHHHH-cCCEEEeC
Confidence 11111 0112 2355667788889999999998 48887764 79999976
No 22
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.24 E-value=2.3e-06 Score=82.07 Aligned_cols=101 Identities=26% Similarity=0.474 Sum_probs=77.8
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
.-|....+|.+|+++|.++.++||++..+....++.+ .+.++||.|++... .|.
T Consensus 93 ~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~---------gl~~~fd~i~~s~~-----------------~~~ 146 (198)
T TIGR01428 93 PHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA---------GLDDPFDAVLSADA-----------------VRA 146 (198)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC---------CChhhhheeEehhh-----------------cCC
Confidence 4588999999999999999999999999999888754 38899999887521 011
Q ss_pred cccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
.+| ...+ .....+.+|..-.++++|||+. .||..++. .||+|+.|-+
T Consensus 147 ~KP-----~~~~-----~~~~~~~~~~~p~~~~~vgD~~-~Di~~A~~-~G~~~i~v~r 193 (198)
T TIGR01428 147 YKP-----APQV-----YQLALEALGVPPDEVLFVASNP-WDLGGAKK-FGFKTAWVNR 193 (198)
T ss_pred CCC-----CHHH-----HHHHHHHhCCChhhEEEEeCCH-HHHHHHHH-CCCcEEEecC
Confidence 111 0112 2346667788888999999999 89998875 7999999865
No 23
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.15 E-value=6.8e-05 Score=72.23 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=62.9
Q ss_pred hHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCcccccc
Q 007924 331 PLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCF 410 (585)
Q Consensus 331 ~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l~~~~ 410 (585)
..+|..|++.|.++.++||++-.++..+++.+ .|..|||.|++...-+ . +|
T Consensus 112 ~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~---------gl~~~f~~~~~~~~~~-----------------~-KP-- 162 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVVTGRPRKDAAKFLTTH---------GLEILFPVQIWMEDCP-----------------P-KP-- 162 (197)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHHHc---------CchhhCCEEEeecCCC-----------------C-Cc--
Confidence 78889999999999999999999999998865 3889999888743311 0 11
Q ss_pred ccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccc
Q 007924 411 KARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKV 453 (585)
Q Consensus 411 ~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk 453 (585)
. ..+ .....+.+|....+++||||.. .||...++
T Consensus 163 --~-p~~-----~~~~~~~~~~~~~~~i~vGD~~-~Di~aA~~ 196 (197)
T TIGR01548 163 --N-PEP-----LILAAKALGVEACHAAMVGDTV-DDIITGRK 196 (197)
T ss_pred --C-HHH-----HHHHHHHhCcCcccEEEEeCCH-HHHHHHHh
Confidence 0 111 2234555788888999999998 58877653
No 24
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.13 E-value=9.4e-06 Score=78.44 Aligned_cols=103 Identities=16% Similarity=0.288 Sum_probs=74.8
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
....|.+..+|..|+++|.++.++||++-..+...+... ..|.++||.|++... .
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~--------~~l~~~fd~v~~s~~-----------------~ 137 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEY--------PEVRAAADHIYLSQD-----------------L 137 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhc--------hhHHHhcCEEEEecc-----------------c
Confidence 345688999999999999999999999977655443322 258899999987641 1
Q ss_pred CccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
|..+| ++.+| ....+.+|....+++||||+.. ||..++. .||+|+.|-
T Consensus 138 ~~~KP-----~p~~~-----~~~~~~~~~~p~~~l~vgD~~~-di~aA~~-aG~~~i~~~ 185 (199)
T PRK09456 138 GMRKP-----EARIY-----QHVLQAEGFSAADAVFFDDNAD-NIEAANA-LGITSILVT 185 (199)
T ss_pred CCCCC-----CHHHH-----HHHHHHcCCChhHeEEeCCCHH-HHHHHHH-cCCEEEEec
Confidence 11122 12333 3566777888899999999975 7776664 799999874
No 25
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.09 E-value=9.3e-06 Score=80.50 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=77.3
Q ss_pred ccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecC
Q 007924 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (585)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~ 402 (585)
++..-|....+|..|+++|.++.++||+.-.++..+++.+ .|.++||+|++.-..
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~~---------------- 147 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL---------GWEQRCAVLIGGDTL---------------- 147 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc---------CchhcccEEEecCcC----------------
Confidence 4455688999999999999999999999998888777654 489999998765311
Q ss_pred CCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
+..+| +..+ .....+.+|....+++||||+. .||...+. .||+|++|.
T Consensus 148 -~~~KP-----~p~~-----~~~~~~~l~~~p~~~l~IGDs~-~Di~aA~~-aG~~~i~v~ 195 (229)
T PRK13226 148 -AERKP-----HPLP-----LLVAAERIGVAPTDCVYVGDDE-RDILAARA-AGMPSVAAL 195 (229)
T ss_pred -CCCCC-----CHHH-----HHHHHHHhCCChhhEEEeCCCH-HHHHHHHH-CCCcEEEEe
Confidence 11111 0111 2356677788889999999995 89887764 699999983
No 26
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.05 E-value=9.3e-06 Score=78.43 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=77.8
Q ss_pred ccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecC
Q 007924 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (585)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~ 402 (585)
.+..-|....+|.+|+++|.++.++||+.-.++...++.+ +|.++||.|++.-.
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~----------------- 126 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL---------GLLPLFDHVIGSDE----------------- 126 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc---------CChhheeeEEecCc-----------------
Confidence 3556689999999999999999999999999999888755 48999998876311
Q ss_pred CCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
.+..+| +. .-.....+.+|....+++||||+. .||..+++ .|++++++.
T Consensus 127 ~~~~KP-----~~-----~~~~~~~~~~~~~~~~~l~igD~~-~Di~aA~~-~Gi~~i~~~ 175 (205)
T TIGR01454 127 VPRPKP-----AP-----DIVREALRLLDVPPEDAVMVGDAV-TDLASARA-AGTATVAAL 175 (205)
T ss_pred CCCCCC-----Ch-----HHHHHHHHHcCCChhheEEEcCCH-HHHHHHHH-cCCeEEEEE
Confidence 010111 01 122355566788889999999997 79998886 699999884
No 27
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.99 E-value=1.6e-05 Score=79.88 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=78.4
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
..-|.+..+|..|+++|.++.++||+.-.++...++.+ .|.+|||.||+...-+. +
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~---------gl~~~Fd~iv~~~~~~~---------------~ 163 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL---------GLSDFFQAVIIGSECEH---------------A 163 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc---------CChhhCcEEEecCcCCC---------------C
Confidence 44588999999999999999999999999999999865 39999999988763210 0
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
+| +... .....+.+|....+++||||.. .||..++. .|++|++|-
T Consensus 164 --KP-----~p~~-----~~~a~~~~~~~~~~~l~vgDs~-~Di~aA~~-aGi~~i~v~ 208 (248)
T PLN02770 164 --KP-----HPDP-----YLKALEVLKVSKDHTFVFEDSV-SGIKAGVA-AGMPVVGLT 208 (248)
T ss_pred --CC-----ChHH-----HHHHHHHhCCChhHEEEEcCCH-HHHHHHHH-CCCEEEEEe
Confidence 11 0011 2344556788888999999999 89998874 699999984
No 28
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.98 E-value=0.00019 Score=78.74 Aligned_cols=99 Identities=15% Similarity=0.097 Sum_probs=71.9
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
..-|....+|..|+++|.++.++||+.-.++...++++ +|.+|||.|++.-.-+ +
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~---------~l~~~f~~i~~~d~v~----------------~ 384 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY---------DLDQWVTETFSIEQIN----------------S 384 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC---------CcHhhcceeEecCCCC----------------C
Confidence 34588899999999999999999999999999999865 4999999988743100 0
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
. .|+.+| ....+- ...++++||||+. .||...|. .|++|++|-.
T Consensus 385 ~-------~kP~~~-----~~al~~--l~~~~~v~VGDs~-~Di~aAk~-AG~~~I~v~~ 428 (459)
T PRK06698 385 L-------NKSDLV-----KSILNK--YDIKEAAVVGDRL-SDINAAKD-NGLIAIGCNF 428 (459)
T ss_pred C-------CCcHHH-----HHHHHh--cCcceEEEEeCCH-HHHHHHHH-CCCeEEEEeC
Confidence 0 001111 111111 2336899999997 99998875 6999999854
No 29
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.98 E-value=2.4e-05 Score=75.28 Aligned_cols=104 Identities=17% Similarity=0.281 Sum_probs=78.7
Q ss_pred cccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeec
Q 007924 322 LFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVT 401 (585)
Q Consensus 322 kYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~ 401 (585)
+.+..-|....+|..|+++|.++.++||+.-.++..+++.+ +|.++||.|++...-
T Consensus 82 ~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~--------------- 137 (213)
T TIGR01449 82 ELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL---------GLAKYFSVLIGGDSL--------------- 137 (213)
T ss_pred ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CcHhhCcEEEecCCC---------------
Confidence 34556789999999999999999999999999999999865 489999988753211
Q ss_pred CCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 402 GEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 402 ~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
+..+| +..+ ...+.+.+|....+++||||+ ..|+..+++ .|+.+++|.
T Consensus 138 --~~~Kp-----~p~~-----~~~~~~~~~~~~~~~~~igDs-~~d~~aa~~-aG~~~i~v~ 185 (213)
T TIGR01449 138 --AQRKP-----HPDP-----LLLAAERLGVAPQQMVYVGDS-RVDIQAARA-AGCPSVLLT 185 (213)
T ss_pred --CCCCC-----ChHH-----HHHHHHHcCCChhHeEEeCCC-HHHHHHHHH-CCCeEEEEc
Confidence 00011 0111 235666678888899999999 589998886 699999884
No 30
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.97 E-value=0.00017 Score=71.32 Aligned_cols=102 Identities=23% Similarity=0.290 Sum_probs=72.7
Q ss_pred ccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecC
Q 007924 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (585)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~ 402 (585)
+...-|.+..+|..|+++|-+++++||-+-.+++.+.... .+.+|||+|++...-| ..+..|
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~---------gl~~~F~~i~g~~~~~--~~KP~P------- 148 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKAL---------GLADYFDVIVGGDDVP--PPKPDP------- 148 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHh---------CCccccceEEcCCCCC--CCCcCH-------
Confidence 4456789999999999999999999999999999999974 3899999999822110 000000
Q ss_pred CCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEee
Q 007924 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
. ....+++.+|....+++||||.++ ||...|.. |-.+++|
T Consensus 149 ----~--------------~l~~~~~~~~~~~~~~l~VGDs~~-Di~aA~~A-g~~~v~v 188 (220)
T COG0546 149 ----E--------------PLLLLLEKLGLDPEEALMVGDSLN-DILAAKAA-GVPAVGV 188 (220)
T ss_pred ----H--------------HHHHHHHHhCCChhheEEECCCHH-HHHHHHHc-CCCEEEE
Confidence 0 011345556666348999999985 88877754 5556655
No 31
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.94 E-value=1.9e-05 Score=71.17 Aligned_cols=100 Identities=24% Similarity=0.297 Sum_probs=70.4
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCC--------hHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSD--------YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHP 395 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~--------~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~p 395 (585)
...-|....+|..|+++|.+++++||+. ..++...++.+- .. |+.+++.. +
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~---------l~--~~~~~~~~-~--------- 82 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELG---------VP--IDVLYACP-H--------- 82 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCC---------CC--EEEEEECC-C---------
Confidence 4456889999999999999999999999 667777766541 11 34443322 0
Q ss_pred cEEeecCCCccccccccCCCccccCCCHHHHHHHh-CCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 396 LYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSL-NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 396 f~~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~ll-g~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
..+| ..+-...+.+.+ +...++++||||+...||..++. .||+|++|-|
T Consensus 83 ---------~~KP----------~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~-~Gi~~i~~~~ 132 (132)
T TIGR01662 83 ---------CRKP----------KPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKR-AGLAFILVAP 132 (132)
T ss_pred ---------CCCC----------ChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHH-CCCeEEEeeC
Confidence 0011 112224566667 48889999999988899998875 6999999854
No 32
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.93 E-value=0.00016 Score=87.17 Aligned_cols=102 Identities=15% Similarity=0.251 Sum_probs=77.1
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCC-CCccEEEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWR-DLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWr-dyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
-|.+..+|..|+++|.++.++||+...+++.+|..+ .|. .|||.|++.-.- +.
T Consensus 163 ~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~---------gl~~~~Fd~iv~~~~~-----------------~~ 216 (1057)
T PLN02919 163 FPGALELITQCKNKGLKVAVASSADRIKVDANLAAA---------GLPLSMFDAIVSADAF-----------------EN 216 (1057)
T ss_pred CccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc---------CCChhHCCEEEECccc-----------------cc
Confidence 588999999999999999999999999999988765 374 899998864310 11
Q ss_pred cccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHhh
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 466 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpEL 466 (585)
.+| ...+| ....+.+|....+++||||.. .||...+ ..||+|++|....
T Consensus 217 ~KP-----~Pe~~-----~~a~~~lgv~p~e~v~IgDs~-~Di~AA~-~aGm~~I~v~~~~ 265 (1057)
T PLN02919 217 LKP-----APDIF-----LAAAKILGVPTSECVVIEDAL-AGVQAAR-AAGMRCIAVTTTL 265 (1057)
T ss_pred CCC-----CHHHH-----HHHHHHcCcCcccEEEEcCCH-HHHHHHH-HcCCEEEEECCCC
Confidence 111 12233 245566788889999999997 5887776 4699999998653
No 33
>PRK09449 dUMP phosphatase; Provisional
Probab=97.91 E-value=2.3e-05 Score=76.47 Aligned_cols=102 Identities=20% Similarity=0.301 Sum_probs=75.2
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
..-|....+|..|+ +|.++.++||+..+.++..+..+ .+.+|||.|++...- |
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~v~~~~~~-----------------~ 147 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT---------GLRDYFDLLVISEQV-----------------G 147 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC---------ChHHHcCEEEEECcc-----------------C
Confidence 34588899999999 57899999999999999888765 388999999876321 1
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCC-CcEEEEcCccccchhhccccCCceEEeehH
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHG-DEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G-~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
..+| ...+ .....+.+|... .+++||||+...||..++. .||+|+.|.+
T Consensus 148 ~~KP-----~p~~-----~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~-aG~~~i~~~~ 197 (224)
T PRK09449 148 VAKP-----DVAI-----FDYALEQMGNPDRSRVLMVGDNLHSDILGGIN-AGIDTCWLNA 197 (224)
T ss_pred CCCC-----CHHH-----HHHHHHHcCCCCcccEEEEcCCcHHHHHHHHH-CCCcEEEECC
Confidence 1111 0111 234455566654 6899999999999997775 6999999863
No 34
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.87 E-value=2e-05 Score=75.66 Aligned_cols=99 Identities=25% Similarity=0.388 Sum_probs=70.9
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
...|....+|..|+++|.++.++||++... ...+.. ..|.++||.|++... .|
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~---------~~l~~~fd~i~~s~~-----------------~~ 157 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEA---------LGLLEYFDFVVTSYE-----------------VG 157 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHH---------CCcHHhcceEEeecc-----------------cC
Confidence 345888999999999999999999998654 334432 248899999987431 11
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEe
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTAL 461 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~a 461 (585)
..+| . ..+ .....+.+|....+++||||....||..++. .||+|++
T Consensus 158 ~~KP----~-~~~-----~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~-aG~~~i~ 203 (203)
T TIGR02252 158 AEKP----D-PKI-----FQEALERAGISPEEALHIGDSLRNDYQGARA-AGWRALL 203 (203)
T ss_pred CCCC----C-HHH-----HHHHHHHcCCChhHEEEECCCchHHHHHHHH-cCCeeeC
Confidence 1111 0 111 2345666788889999999999999998875 6999874
No 35
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.78 E-value=3e-05 Score=77.07 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=75.2
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
..-|.+..+|..|+++|.++.++||+...+++..++.+ .|.+|||.||+...-.
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~iv~s~~~~----------------- 146 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT---------GLDAHLDLLLSTHTFG----------------- 146 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC---------CcHHHCCEEEEeeeCC-----------------
Confidence 44588899999999999999999999999999888764 3999999988654210
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHh
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpE 465 (585)
..+| ...+ .....+.+|....+++||||... ||..++ ..||+|+..|+-
T Consensus 147 ~~KP-----~p~~-----~~~~~~~~~~~p~~~l~igDs~~-di~aA~-~aG~~~~~~v~~ 195 (224)
T PRK14988 147 YPKE-----DQRL-----WQAVAEHTGLKAERTLFIDDSEP-ILDAAA-QFGIRYCLGVTN 195 (224)
T ss_pred CCCC-----CHHH-----HHHHHHHcCCChHHEEEEcCCHH-HHHHHH-HcCCeEEEEEeC
Confidence 0011 0111 22455667888889999999985 777666 579998665543
No 36
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.73 E-value=6e-05 Score=65.11 Aligned_cols=117 Identities=23% Similarity=0.258 Sum_probs=80.1
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
+...|.+..+|.+|+++|.+++++||+...++...++.+ .+..+|+.|+.....+.+-.......
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~------ 87 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL---------GLDDYFDPVITSNGAAIYYPKEGLFL------ 87 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc---------CCchhhhheeccchhhhhcccccccc------
Confidence 445688899999999999999999999999998888764 26688888887776654432221110
Q ss_pred CccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEee
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
+.... ...++ ..+....+.+.++....+++||||+. +|+...+. .||+|++|
T Consensus 88 ~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~igD~~-~d~~~~~~-~g~~~i~v 139 (139)
T cd01427 88 GGGPF--DIGKP---NPDKLLAALKLLGVDPEEVLMVGDSL-NDIEMAKA-AGGLGVAV 139 (139)
T ss_pred ccccc--ccCCC---CHHHHHHHHHHcCCChhhEEEeCCCH-HHHHHHHH-cCCceeeC
Confidence 00000 00000 01222356666777788999999999 99988884 59999875
No 37
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.72 E-value=0.0002 Score=73.03 Aligned_cols=105 Identities=21% Similarity=0.364 Sum_probs=70.6
Q ss_pred cccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEe
Q 007924 320 PELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEV 399 (585)
Q Consensus 320 pekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~v 399 (585)
|+-|..-++.. .+|+++|+.|.+|-++||=+..+- ...=.+ + =..|||.||+++.=
T Consensus 109 ~~~~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~--~~l~~~------~--l~~~fD~vv~S~e~------------- 164 (237)
T KOG3085|consen 109 PSAWKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR--LLLLPL------G--LSAYFDFVVESCEV------------- 164 (237)
T ss_pred ccCceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH--HHhhcc------C--HHHhhhhhhhhhhh-------------
Confidence 44444445544 899999999955555555444443 221111 2 34899999987531
Q ss_pred ecCCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 400 VTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 400 d~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
|..+| -.+||+ ..++.+|..-.+|+++||..-.|+..++. .||+|.+|.
T Consensus 165 ----g~~KP-----Dp~If~-----~al~~l~v~Pee~vhIgD~l~nD~~gA~~-~G~~ailv~ 213 (237)
T KOG3085|consen 165 ----GLEKP-----DPRIFQ-----LALERLGVKPEECVHIGDLLENDYEGARN-LGWHAILVD 213 (237)
T ss_pred ----ccCCC-----ChHHHH-----HHHHHhCCChHHeEEecCccccccHhHHH-cCCEEEEEc
Confidence 22222 134552 46778888888999999999999998885 699999997
No 38
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.70 E-value=7.9e-05 Score=72.00 Aligned_cols=103 Identities=17% Similarity=0.306 Sum_probs=77.8
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
...|....+|.++++. .++.++||+.-......+..+ .|..+||.|++...- |
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~---------~l~~~fd~i~~~~~~-----------------~ 149 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKS---------GLFPFFDDIFVSEDA-----------------G 149 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHC---------CcHhhcCEEEEcCcc-----------------C
Confidence 3457888999999998 899999999999998888755 488899999885421 1
Q ss_pred ccccccccCCCccccCCCHHHHHHHh-CCCCCcEEEEcCccccchhhccccCCceEEeehHh
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSL-NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~ll-g~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpE 465 (585)
..+| ++.+| ....+.+ |..-.+++||||+...||..+++ .||.++.+-..
T Consensus 150 ~~KP-----~~~~~-----~~~~~~~~~~~~~~~v~igD~~~~di~~A~~-~G~~~i~~~~~ 200 (224)
T TIGR02254 150 IQKP-----DKEIF-----NYALERMPKFSKEEVLMIGDSLTADIKGGQN-AGLDTCWMNPD 200 (224)
T ss_pred CCCC-----CHHHH-----HHHHHHhcCCCchheEEECCCcHHHHHHHHH-CCCcEEEECCC
Confidence 1111 11222 2455556 88888999999999899998886 59999998653
No 39
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.68 E-value=6.1e-05 Score=70.79 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=69.2
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
.-|.+..+|..|+++|.++.++||+.. ...+++. ..|.++||.|+....-+ .
T Consensus 88 ~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~---------~~l~~~f~~~~~~~~~~-----------------~ 139 (185)
T TIGR01990 88 VLPGIKNLLDDLKKNNIKIALASASKN--APTVLEK---------LGLIDYFDAIVDPAEIK-----------------K 139 (185)
T ss_pred cCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHh---------cCcHhhCcEEEehhhcC-----------------C
Confidence 358899999999999999999999853 3444443 24899999988654211 0
Q ss_pred cccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEee
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
.+| +..+|. ...+.++...++++||||+. .||..++. .||+|++|
T Consensus 140 ~kp-----~p~~~~-----~~~~~~~~~~~~~v~vgD~~-~di~aA~~-aG~~~i~v 184 (185)
T TIGR01990 140 GKP-----DPEIFL-----AAAEGLGVSPSECIGIEDAQ-AGIEAIKA-AGMFAVGV 184 (185)
T ss_pred CCC-----ChHHHH-----HHHHHcCCCHHHeEEEecCH-HHHHHHHH-cCCEEEec
Confidence 011 122222 45556677888999999996 89988885 69999986
No 40
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.66 E-value=9.6e-05 Score=71.64 Aligned_cols=106 Identities=24% Similarity=0.366 Sum_probs=80.0
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
+..-|++...|.++++. .+|.++||+.-........-+ | ..++||.|++....
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-------g--l~~~Fd~v~~s~~~----------------- 150 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-------G--LLDYFDAVFISEDV----------------- 150 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-------C--ChhhhheEEEeccc-----------------
Confidence 44457778888888777 889999999888887777755 3 78999999876433
Q ss_pred CccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHhhH
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELE 467 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe 467 (585)
|..+| ...+| ...++.+|....++|+|||++..||..++. .||+|+.|.++-.
T Consensus 151 g~~KP-----~~~~f-----~~~~~~~g~~p~~~l~VgD~~~~di~gA~~-~G~~~vwi~~~~~ 203 (229)
T COG1011 151 GVAKP-----DPEIF-----EYALEKLGVPPEEALFVGDSLENDILGARA-LGMKTVWINRGGK 203 (229)
T ss_pred ccCCC-----CcHHH-----HHHHHHcCCCcceEEEECCChhhhhHHHHh-cCcEEEEECCCCC
Confidence 32222 12333 357778888888999999999999987775 6999998876653
No 41
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.65 E-value=9e-05 Score=69.65 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=73.9
Q ss_pred ccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecC
Q 007924 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 402 (585)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~ 402 (585)
.+...|.+..+|..|+++|.++.++||+ ..++.+++.+ .|.+|||.|++....+
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~---------~l~~~f~~v~~~~~~~--------------- 139 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL---------GLTDYFDAIVDADEVK--------------- 139 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc---------ChHHHCCEeeehhhCC---------------
Confidence 3566789999999999999999999999 6677777754 4889999998753211
Q ss_pred CCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEee
Q 007924 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
..+| ...+| ....+-+|...++++||||.. .||..++. .||+|++|
T Consensus 140 --~~kp-----~~~~~-----~~~~~~~~~~~~~~v~IgD~~-~di~aA~~-~G~~~i~v 185 (185)
T TIGR02009 140 --EGKP-----HPETF-----LLAAELLGVSPNECVVFEDAL-AGVQAARA-AGMFAVAV 185 (185)
T ss_pred --CCCC-----ChHHH-----HHHHHHcCCCHHHeEEEeCcH-hhHHHHHH-CCCeEeeC
Confidence 0011 01122 345666788888999999995 79998886 59999875
No 42
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.65 E-value=8.2e-05 Score=70.67 Aligned_cols=102 Identities=21% Similarity=0.367 Sum_probs=71.7
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
+...|.+..+|.+|+ +++.++||++-.++...++.+ .+.++||.|++...-..-.
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~---------gl~~~fd~i~~~~~~~~~~------------- 137 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL---------GIEDCFDGIFCFDTANPDY------------- 137 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc---------CcHhhhCeEEEeecccCcc-------------
Confidence 445677888999887 469999999999998888765 3889999988764321000
Q ss_pred CccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEee
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
+..+| ...+| ....+.+|....+++||||+. .||..+++ .||+|++|
T Consensus 138 ~~~KP-----~p~~~-----~~~~~~~~~~~~~~l~vgD~~-~di~aA~~-~G~~~i~v 184 (184)
T TIGR01993 138 LLPKP-----SPQAY-----EKALREAGVDPERAIFFDDSA-RNIAAAKA-LGMKTVLV 184 (184)
T ss_pred CCCCC-----CHHHH-----HHHHHHhCCCccceEEEeCCH-HHHHHHHH-cCCEEeeC
Confidence 00011 01122 345566788889999999997 58877775 69999875
No 43
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.63 E-value=0.00014 Score=72.94 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=75.6
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEE--ccCCCCCCCCCCCcEEeecC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIV--SARKPEFFQMSHPLYEVVTG 402 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv--~A~KP~FF~~~~pf~~vd~~ 402 (585)
..-|....+|.+|+++|.++.++||++-..+..++.+.-. .++.+|||.++. -+.||
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~------~~L~~~f~~~fd~~~g~KP--------------- 153 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDA------GNLTPYFSGYFDTTVGLKT--------------- 153 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccc------cchhhhcceEEEeCcccCC---------------
Confidence 3458899999999999999999999999999988887531 246666664321 00121
Q ss_pred CCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHhh
Q 007924 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 466 (585)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpEL 466 (585)
.-.......+.+|....++|||||+. .||..++. .||+|+++++.=
T Consensus 154 ----------------~p~~y~~i~~~lgv~p~e~lfVgDs~-~Di~AA~~-AG~~ti~v~r~g 199 (220)
T TIGR01691 154 ----------------EAQSYVKIAGQLGSPPREILFLSDII-NELDAARK-AGLHTGQLVRPG 199 (220)
T ss_pred ----------------CHHHHHHHHHHhCcChhHEEEEeCCH-HHHHHHHH-cCCEEEEEECCC
Confidence 11123456677788889999999994 89888775 799999997643
No 44
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.58 E-value=0.0001 Score=70.51 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=65.1
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCC-hHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSD-YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~-~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
-|.+..+|..|++.|.+++++||++ -..+..+...+ ++..+ ....||
T Consensus 45 ~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~---------gl~~~-----~~~~KP------------------ 92 (170)
T TIGR01668 45 YPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL---------GIPVL-----PHAVKP------------------ 92 (170)
T ss_pred ChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc---------CCEEE-----cCCCCC------------------
Confidence 4678889999999999999999998 45554443322 11111 011111
Q ss_pred cccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHhh
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 466 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpEL 466 (585)
........++.+|...++++||||+++.||..++. .||+|++|-+.-
T Consensus 93 -------------~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~-aGi~~i~v~~g~ 139 (170)
T TIGR01668 93 -------------PGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNR-NGSYTILVEPLV 139 (170)
T ss_pred -------------ChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHH-cCCeEEEEccCc
Confidence 01123345666788889999999999999998885 699999996654
No 45
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.55 E-value=0.00026 Score=72.53 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=76.4
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
...-|.+..+|..|+++|.++.++||++-.+...++..+ .|..+||.|++...-
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~---------~i~~~f~~i~~~d~~----------------- 153 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM---------KIGRYFRWIIGGDTL----------------- 153 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc---------CcHhhCeEEEecCCC-----------------
Confidence 344588999999999999999999999998888777754 388899987664210
Q ss_pred CccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
+..++ ...-...+.+.+|....+++||||+ ..||...+. .||+|++|.
T Consensus 154 ~~~Kp----------~p~~~~~~~~~~g~~~~~~l~IGD~-~~Di~aA~~-aGi~~i~v~ 201 (272)
T PRK13223 154 PQKKP----------DPAALLFVMKMAGVPPSQSLFVGDS-RSDVLAAKA-AGVQCVALS 201 (272)
T ss_pred CCCCC----------CcHHHHHHHHHhCCChhHEEEECCC-HHHHHHHHH-CCCeEEEEe
Confidence 00111 0112335666778888999999999 699998886 699999984
No 46
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.52 E-value=0.00017 Score=74.49 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=76.6
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
..-|.+..+|..|++.|.++.++||+.-.+.+.++..+.+ ..|.++||+| .... .+
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~------~~~~~~~~~v-~~~~-----------------~~ 199 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLG------PERAQGLDVF-AGDD-----------------VP 199 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcc------ccccCceEEE-eccc-----------------cC
Confidence 4557889999999999999999999999999998887642 4577888876 2210 01
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
..+| .-.-.....+.+|....+++||||.+ .||..++. .||++++|..
T Consensus 200 ~~KP----------~p~~~~~a~~~~~~~p~~~l~IGDs~-~Di~aA~~-aG~~~i~v~~ 247 (286)
T PLN02779 200 KKKP----------DPDIYNLAAETLGVDPSRCVVVEDSV-IGLQAAKA-AGMRCIVTKS 247 (286)
T ss_pred CCCC----------CHHHHHHHHHHhCcChHHEEEEeCCH-HhHHHHHH-cCCEEEEEcc
Confidence 1111 01112345667788889999999997 69998886 6999998854
No 47
>PLN02811 hydrolase
Probab=97.47 E-value=0.00028 Score=69.37 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=67.6
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHh-hhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDK-MMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~-vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
-|....+|..|+++|.++.++||+.-.+... ...+ ..|.++||.|++... |. + +.
T Consensus 80 ~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~---------~~l~~~f~~i~~~~~-~~----------~----~~ 135 (220)
T PLN02811 80 MPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRH---------GELFSLMHHVVTGDD-PE----------V----KQ 135 (220)
T ss_pred CccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHccc---------HHHHhhCCEEEECCh-hh----------c----cC
Confidence 3788999999999999999999998765443 3322 248899998887541 00 0 00
Q ss_pred cccccccCCCccccCCCHHHHHHHh---CCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSL---NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~ll---g~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
.+| ...+| ....+.+ |....+++||||+. .|+..++. .|++|++|-.
T Consensus 136 ~KP-----~p~~~-----~~a~~~~~~~~~~~~~~v~IgDs~-~di~aA~~-aG~~~i~v~~ 185 (220)
T PLN02811 136 GKP-----APDIF-----LAAARRFEDGPVDPGKVLVFEDAP-SGVEAAKN-AGMSVVMVPD 185 (220)
T ss_pred CCC-----CcHHH-----HHHHHHhCCCCCCccceEEEeccH-hhHHHHHH-CCCeEEEEeC
Confidence 011 01122 1222333 36678999999998 58887775 6999999843
No 48
>PLN02954 phosphoserine phosphatase
Probab=97.31 E-value=0.0048 Score=60.20 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=33.8
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
..|....+|..++++|.++.++||+.-.++..+++.+
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~ 121 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL 121 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh
Confidence 4588999999999999999999999999999998865
No 49
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.31 E-value=0.00033 Score=70.00 Aligned_cols=99 Identities=25% Similarity=0.342 Sum_probs=69.5
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
+..-|.+..+|..|++. .++.++||++.. ++ ...+.+|||.||+...-
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~---------~~gl~~~fd~i~~~~~~----------------- 159 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PE---------LFGLGDYFEFVLRAGPH----------------- 159 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-----HH---------HCCcHHhhceeEecccC-----------------
Confidence 45568899999999875 689999998764 22 12488999988865321
Q ss_pred CccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHh
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpE 465 (585)
+..+| +..+| ....+.+|....+++||||++..||..++. .||+|+.|-+.
T Consensus 160 ~~~KP-----~p~~~-----~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~-aG~~~i~v~~~ 210 (238)
T PRK10748 160 GRSKP-----FSDMY-----HLAAEKLNVPIGEILHVGDDLTTDVAGAIR-CGMQACWINPE 210 (238)
T ss_pred CcCCC-----cHHHH-----HHHHHHcCCChhHEEEEcCCcHHHHHHHHH-CCCeEEEEcCC
Confidence 00011 01122 233455678888999999999999999886 79999998653
No 50
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.29 E-value=0.00055 Score=66.65 Aligned_cols=109 Identities=15% Similarity=0.093 Sum_probs=71.2
Q ss_pred CCCchHHHHHHhHcCceEEEEcCC-ChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNS-DYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS-~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
-|....+|..|+++|.+++++||+ .-.++..+|.++--...+.....-++||.||+.. +| +.
T Consensus 47 ~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~-~~----------------~~ 109 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIY-KP----------------NK 109 (174)
T ss_pred cccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeecc-CC----------------ch
Confidence 377889999999999999999999 9999999998762000011112228999998853 22 00
Q ss_pred cccccccCCCccccCCCHHHHHHHh--CCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSL--NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~ll--g~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
..+. ..+ +..+.+.. |..-.+++||||... ||...+ ..|++|++|..
T Consensus 110 ~kp~-----~~i-----~~~~~~~~~~gl~p~e~l~VgDs~~-di~aA~-~aGi~~i~v~~ 158 (174)
T TIGR01685 110 AKQL-----EMI-----LQKVNKVDPSVLKPAQILFFDDRTD-NVREVW-GYGVTSCYCPS 158 (174)
T ss_pred HHHH-----HHH-----HHHhhhcccCCCCHHHeEEEcChhH-hHHHHH-HhCCEEEEcCC
Confidence 0100 000 11222333 566789999999994 566555 67999999843
No 51
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.22 E-value=0.00043 Score=64.33 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=63.4
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCCh---------------HhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCC
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDY---------------HYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFF 390 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~---------------~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF 390 (585)
..|....+|..|+++|.++.++||.+. ..+..+++.+ + +. |+.++.....|.
T Consensus 28 ~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~--l~--~~~~~~~~~~~~-- 94 (147)
T TIGR01656 28 LRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQL-------G--VA--VDGVLFCPHHPA-- 94 (147)
T ss_pred EcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhC-------C--Cc--eeEEEECCCCCC--
Confidence 468889999999999999999999873 3444444433 1 21 111111100000
Q ss_pred CCCCCcEEeecCCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 391 QMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 391 ~~~~pf~~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
...+..+| .-+-+..+.+.+|....+++||||+ ..||..++ ..||+|++|.
T Consensus 95 ----------~~~~~~KP----------~~~~~~~~~~~~~~~~~e~i~IGDs-~~Di~~A~-~~Gi~~v~i~ 145 (147)
T TIGR01656 95 ----------DNCSCRKP----------KPGLILEALKRLGVDASRSLVVGDR-LRDLQAAR-NAGLAAVLLV 145 (147)
T ss_pred ----------CCCCCCCC----------CHHHHHHHHHHcCCChHHEEEEcCC-HHHHHHHH-HCCCCEEEec
Confidence 00000111 0112345566678888899999999 88998886 4799999985
No 52
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.14 E-value=0.00096 Score=63.78 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=70.9
Q ss_pred ccccCCCchHHHHHHhHcCceEEEEcCCC---------------hHhhHhhhcccccccCCCCCCCCCCccEEEEccCCC
Q 007924 323 FVEPDPELPLALLDQKEAGKKLLLITNSD---------------YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKP 387 (585)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~---------------~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP 387 (585)
.+..-|.+..+|.+|+++|.+++++||.. ..+++.+.+.+ ++. ||-+++.+.+|
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~---------gl~--fd~ii~~~~~~ 95 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ---------GII--FDDVLICPHFP 95 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC---------CCc--eeEEEECCCCC
Confidence 34556889999999999999999999963 34444444433 243 87666554333
Q ss_pred CCCCCCCCcEEeecCCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 388 EFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 388 ~FF~~~~pf~~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
. + +.+..+| .-+-+..+.+.++....+++||||. ..|+..++. .||.+++|-+
T Consensus 96 ~---~---------~~~~~KP----------~~~~~~~~~~~~~~~~~e~l~IGD~-~~Di~~A~~-aGi~~i~~~~ 148 (161)
T TIGR01261 96 D---D---------NCDCRKP----------KIKLLEPYLKKNLIDKARSYVIGDR-ETDMQLAEN-LGIRGIQYDE 148 (161)
T ss_pred C---C---------CCCCCCC----------CHHHHHHHHHHcCCCHHHeEEEeCC-HHHHHHHHH-CCCeEEEECh
Confidence 1 0 0011111 1122345566677777899999998 679998874 6999999854
No 53
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.11 E-value=0.00072 Score=62.08 Aligned_cols=86 Identities=26% Similarity=0.350 Sum_probs=62.0
Q ss_pred CCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCccc
Q 007924 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMR 407 (585)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l~ 407 (585)
|.+..+|..|+++|.++.++||+....+...+.+.+ .++|+.|++... + + -+
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~l----------~~~f~~i~~~~~-~----------------~-~K 118 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKHL----------GDYFDLILGSDE-F----------------G-AK 118 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHHH----------HhcCcEEEecCC-C----------------C-CC
Confidence 678999999999999999999999999999888652 246887775321 0 1 01
Q ss_pred cccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccc
Q 007924 408 PCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKV 453 (585)
Q Consensus 408 ~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk 453 (585)
| .......+++.+|... +++||||+ -.|+..++.
T Consensus 119 p----------~~~~~~~~~~~~~~~~-~~l~iGDs-~~Di~aa~~ 152 (154)
T TIGR01549 119 P----------EPEIFLAALESLGLPP-EVLHVGDN-LNDIEGARN 152 (154)
T ss_pred c----------CHHHHHHHHHHcCCCC-CEEEEeCC-HHHHHHHHH
Confidence 1 0111234566678877 99999999 678877653
No 54
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.06 E-value=0.00072 Score=65.75 Aligned_cols=93 Identities=28% Similarity=0.408 Sum_probs=66.1
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccE-EEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNM-VIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDv-VIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
-|++..|+..+|++|-|+++++|-.=.=+.. |-.-||| -|-.|+||-
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~---------------~~~~l~v~fi~~A~KP~----------------- 95 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVAR---------------AAEKLGVPFIYRAKKPF----------------- 95 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHh---------------hhhhcCCceeecccCcc-----------------
Confidence 4788999999999999999999944333322 2222332 244677761
Q ss_pred cccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHhh
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 466 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpEL 466 (585)
+=......+-++..-++|+.|||.|+.||+..+. .|.||++|.|=-
T Consensus 96 --------------~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr-~G~~tIlV~Pl~ 141 (175)
T COG2179 96 --------------GRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNR-AGMRTILVEPLV 141 (175)
T ss_pred --------------HHHHHHHHHHcCCChhHEEEEcchhhhhhhcccc-cCcEEEEEEEec
Confidence 0011234555677889999999999999998884 799999998843
No 55
>PRK06769 hypothetical protein; Validated
Probab=97.03 E-value=0.00087 Score=64.26 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=32.5
Q ss_pred HHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHh
Q 007924 424 QMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (585)
Q Consensus 424 ~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpE 465 (585)
....+.++..-.+++||||+. .||..++. .||.+++|-+.
T Consensus 100 ~~~~~~l~~~p~~~i~IGD~~-~Di~aA~~-aGi~~i~v~~g 139 (173)
T PRK06769 100 LQAAEKHGLDLTQCAVIGDRW-TDIVAAAK-VNATTILVRTG 139 (173)
T ss_pred HHHHHHcCCCHHHeEEEcCCH-HHHHHHHH-CCCeEEEEecC
Confidence 345555777778999999997 89998885 69999999653
No 56
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.94 E-value=0.0021 Score=61.48 Aligned_cols=108 Identities=25% Similarity=0.334 Sum_probs=65.0
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCCh----HhhH-------hhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCC
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDY----HYTD-------KMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSH 394 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~----~Ytn-------~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~ 394 (585)
.-|....+|.+|++.|.++.++||+.- .|+. .-+..++. ...+ +||-|++...-+.
T Consensus 30 ~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~g~--~f~~i~~~~~~~~------ 96 (181)
T PRK08942 30 PIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLA-----DRGG--RLDGIYYCPHHPE------ 96 (181)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHH-----HcCC--ccceEEECCCCCC------
Confidence 357889999999999999999999973 1221 11222221 0112 3776654321100
Q ss_pred CcEEeecCCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 395 PLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 395 pf~~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
.+.+..+| ...+ .....+.+|....+++||||+. .||..++. .||++++|-.
T Consensus 97 ------~~~~~~KP-----~p~~-----~~~~~~~l~~~~~~~~~VgDs~-~Di~~A~~-aG~~~i~v~~ 148 (181)
T PRK08942 97 ------DGCDCRKP-----KPGM-----LLSIAERLNIDLAGSPMVGDSL-RDLQAAAA-AGVTPVLVRT 148 (181)
T ss_pred ------CCCcCCCC-----CHHH-----HHHHHHHcCCChhhEEEEeCCH-HHHHHHHH-CCCeEEEEcC
Confidence 00011111 0111 2245566788889999999997 59998875 6998888753
No 57
>PRK11590 hypothetical protein; Provisional
Probab=96.77 E-value=0.034 Score=54.69 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=61.4
Q ss_pred cCCCchHHH-HHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 326 PDPELPLAL-LDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 326 kdp~l~~~L-~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
.-|.....| ..+++.|.++.++|||+-.|+..++.++- |..-..+|=+ +. ++ ..+|
T Consensus 96 ~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~---------~~~~~~~i~t---~l----------~~-~~tg 152 (211)
T PRK11590 96 AFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP---------WLPRVNLIAS---QM----------QR-RYGG 152 (211)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc---------ccccCceEEE---EE----------EE-EEcc
Confidence 357888888 56788999999999999999999998763 5443333322 21 12 1234
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhh
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQ 450 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~ 450 (585)
.+.. ...|-.|=+..+.+.+|......-..|||+ +|+-=
T Consensus 153 ~~~g------~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~-~D~pm 191 (211)
T PRK11590 153 WVLT------LRCLGHEKVAQLERKIGTPLRLYSGYSDSK-QDNPL 191 (211)
T ss_pred EECC------ccCCChHHHHHHHHHhCCCcceEEEecCCc-ccHHH
Confidence 3321 223444455567777765555566779999 88753
No 58
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.64 E-value=0.0017 Score=59.48 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCchHHHHHHhHcCceEEEEcCC-ChHhhHhhhcccccccCCCC--CCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 328 PELPLALLDQKEAGKKLLLITNS-DYHYTDKMMQHSFNRFLPND--MGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS-~~~Ytn~vM~Yl~~~~l~~g--~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
|.+..+|..|+++|.++.++||+ .-.++..+++..-. .+ ..+.++||.+++...||.
T Consensus 32 ~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~----~~~i~~l~~~f~~~~~~~~~pk---------------- 91 (128)
T TIGR01681 32 KEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFED----FGIIFPLAEYFDPLTIGYWLPK---------------- 91 (128)
T ss_pred HHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccc----cccchhhHhhhhhhhhcCCCcH----------------
Confidence 57788999999999999999999 89999998876420 00 016889998887755431
Q ss_pred ccccccccCCCccccCCCHHHHHHHhC--CCCCcEEEEcCcccc
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLN--IHGDEILYVGDHIYT 446 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg--~~G~~VLYfGDHIyg 446 (585)
+.. .....+.+| +..++++||||....
T Consensus 92 ----------p~~-----~~~a~~~lg~~~~p~~~l~igDs~~n 120 (128)
T TIGR01681 92 ----------SPR-----LVEIALKLNGVLKPKSILFVDDRPDN 120 (128)
T ss_pred ----------HHH-----HHHHHHHhcCCCCcceEEEECCCHhH
Confidence 111 234556678 888999999998753
No 59
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.54 E-value=0.0057 Score=65.87 Aligned_cols=108 Identities=23% Similarity=0.333 Sum_probs=66.4
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCC----hHhhHh-------hhcccccccCCCCCCCCCCccEEEEccCCCCCCCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSD----YHYTDK-------MMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQM 392 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~----~~Ytn~-------vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~ 392 (585)
+...|.+..+|..|+++|.+++++||.+ -.|... .|.-++. ...+ +||-|+..+..| .+
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~-----~~gl--~fd~i~i~~~~~---sd 98 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFE-----SQGI--KFDEVLICPHFP---ED 98 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHH-----HcCC--ceeeEEEeCCcC---cc
Confidence 5557889999999999999999999951 111111 1222221 1123 377776654333 10
Q ss_pred CCCcEEeecCCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEee
Q 007924 393 SHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 393 ~~pf~~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
. .+.-+| .-+-+....+.++....+++||||.. +|+..++. .||++++|
T Consensus 99 ~---------~~~rKP----------~p~~l~~a~~~l~v~~~~svmIGDs~-sDi~aAk~-aGi~~I~v 147 (354)
T PRK05446 99 N---------CSCRKP----------KTGLVEEYLAEGAIDLANSYVIGDRE-TDVQLAEN-MGIKGIRY 147 (354)
T ss_pred c---------CCCCCC----------CHHHHHHHHHHcCCCcccEEEEcCCH-HHHHHHHH-CCCeEEEE
Confidence 0 000011 11223344455677789999999985 89998885 69999998
No 60
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.49 E-value=0.0063 Score=58.09 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=64.7
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCCh----HhhHhh-------hcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCC
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDY----HYTDKM-------MQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHP 395 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~----~Ytn~v-------M~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~p 395 (585)
-|.+..+|..|+++|.++.++||++- .|+... |..++. ..+-. ||.|+....-|.- .+
T Consensus 28 ~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~-~~~i~~~~~~~~~----~~ 96 (176)
T TIGR00213 28 IDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLA------ERDVD-LDGIYYCPHHPEG----VE 96 (176)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHH------HcCCC-ccEEEECCCCCcc----cc
Confidence 47899999999999999999999983 233221 111221 11112 6666554322100 00
Q ss_pred cEEeecCCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 396 LYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 396 f~~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
++..+.+..+| +..+ +....+.+|....+++||||.. .||...+. .||+|+..|
T Consensus 97 --~~~~~~~~~KP-----~p~~-----~~~a~~~~~~~~~~~v~VGDs~-~Di~aA~~-aG~~~~i~v 150 (176)
T TIGR00213 97 --EFRQVCDCRKP-----KPGM-----LLQARKELHIDMAQSYMVGDKL-EDMQAGVA-AKVKTNVLV 150 (176)
T ss_pred --cccCCCCCCCC-----CHHH-----HHHHHHHcCcChhhEEEEcCCH-HHHHHHHH-CCCcEEEEE
Confidence 00001111111 1112 2355666788889999999986 69998875 699994444
No 61
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.45 E-value=0.006 Score=58.52 Aligned_cols=103 Identities=18% Similarity=0.281 Sum_probs=64.0
Q ss_pred CcccccccCCCchHHHHHHhHcCceEEEEcCCChH------------hhHhhhcccccccCCCCCCCCCCccEEEEccCC
Q 007924 319 KPELFVEPDPELPLALLDQKEAGKKLLLITNSDYH------------YTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARK 386 (585)
Q Consensus 319 npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~------------Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~K 386 (585)
+|++....-|.+..+|.+|+++|.++.++||.+-. .+..+++.+ | +. +|.+|+.. .
T Consensus 36 ~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~-------g--l~--~~~ii~~~-~ 103 (166)
T TIGR01664 36 SASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL-------K--VP--IQVLAATH-A 103 (166)
T ss_pred ChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc-------C--CC--EEEEEecC-C
Confidence 44444444578899999999999999999998753 344444433 2 32 24444432 1
Q ss_pred CCCCCCCCCcEEeecCCCccccccccCCCccccCCCHHHHHHHhC--CCCCcEEEEcCcc-------ccchhhccccCCc
Q 007924 387 PEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLN--IHGDEILYVGDHI-------YTDVSQSKVHLRW 457 (585)
Q Consensus 387 P~FF~~~~pf~~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg--~~G~~VLYfGDHI-------ygDIl~sKk~~gW 457 (585)
.. .-+| ..+....+.+.+| +...+++||||.. -.||..++. .|+
T Consensus 104 -~~---------------~~KP----------~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~-aGi 156 (166)
T TIGR01664 104 -GL---------------YRKP----------MTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKN-LGL 156 (166)
T ss_pred -CC---------------CCCC----------ccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHH-CCC
Confidence 00 0011 0122334555566 7778999999986 389998875 577
Q ss_pred eEE
Q 007924 458 RTA 460 (585)
Q Consensus 458 RT~ 460 (585)
.++
T Consensus 157 ~~~ 159 (166)
T TIGR01664 157 EFK 159 (166)
T ss_pred CcC
Confidence 764
No 62
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.24 E-value=0.0016 Score=66.30 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=67.4
Q ss_pred CchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEcc-CCCCCCCCCCCcEEeecCCCccc
Q 007924 329 ELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA-RKPEFFQMSHPLYEVVTGEGLMR 407 (585)
Q Consensus 329 ~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A-~KP~FF~~~~pf~~vd~~~g~l~ 407 (585)
.+...+..|++.|+++|+.||.+-.|....... ..+-.+|+.|.... .+|.++....|
T Consensus 124 ~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~---------~g~g~~~~~i~~~~~~~~~~~gKP~p------------ 182 (257)
T TIGR01458 124 ILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLA---------LDVGPFVTALEYATDTKATVVGKPSK------------ 182 (257)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCC---------CCchHHHHHHHHHhCCCceeecCCCH------------
Confidence 345566667778889999999998887654432 23677787766432 23322211111
Q ss_pred cccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 408 PCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 408 ~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
.+| ....+.+|....++++|||++..||.-.+. .||+|++|..
T Consensus 183 --------~~~-----~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~-~G~~~i~v~~ 225 (257)
T TIGR01458 183 --------TFF-----LEALRATGCEPEEAVMIGDDCRDDVGGAQD-CGMRGIQVRT 225 (257)
T ss_pred --------HHH-----HHHHHHhCCChhhEEEECCCcHHHHHHHHH-cCCeEEEECC
Confidence 111 123344577788999999999999998885 6999999954
No 63
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=96.17 E-value=0.11 Score=55.12 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=65.0
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
+...|....+|..|++.|.++.++||+...|++.++..+ + +|-++.+ .+++. .
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L-g------------ld~~~an------------~lei~--d 232 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL-R------------LDAAVAN------------ELEIM--D 232 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc-C------------CCeEEEe------------EEEEE--C
Confidence 334677888999999999999999999999988877743 2 1222211 11221 1
Q ss_pred CccccccccCCCccccCCCHHHH---HHHhCCCCCcEEEEcCccccchhhccccCCceEE
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMI---ENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTA 460 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l---~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~ 460 (585)
|.+.. ......+...+....+ .+-+|....++++|||.. .|+.-.+. .|.-.+
T Consensus 233 g~ltg--~v~g~iv~~k~K~~~L~~la~~lgi~~~qtIaVGDg~-NDl~m~~~-AGlgiA 288 (322)
T PRK11133 233 GKLTG--NVLGDIVDAQYKADTLTRLAQEYEIPLAQTVAIGDGA-NDLPMIKA-AGLGIA 288 (322)
T ss_pred CEEEe--EecCccCCcccHHHHHHHHHHHcCCChhhEEEEECCH-HHHHHHHH-CCCeEE
Confidence 22211 0000012223444444 445677778999999999 89987654 465443
No 64
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=96.11 E-value=0.026 Score=53.58 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=69.2
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
..|....+|..|+++|.+++++||+.-.++..++..+ | +..+|+.++.... -+++.. .+....
T Consensus 81 ~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-------g--~~~~~~~~~~~~~-~g~~~p-~~~~~~------ 143 (201)
T TIGR01491 81 LRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL-------N--PDYVYSNELVFDE-KGFIQP-DGIVRV------ 143 (201)
T ss_pred CCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh-------C--CCeEEEEEEEEcC-CCeEec-ceeeEE------
Confidence 4578889999999999999999999999999998876 2 4456665554321 111110 011000
Q ss_pred cccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEe
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTAL 461 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~a 461 (585)
.+ ..|+ .-+..+.+.+|....+++||||+ ..|+-..+. .||..++
T Consensus 144 -~~---~~k~-----~~~~~~~~~~~~~~~~~i~iGDs-~~D~~~a~~-ag~~~a~ 188 (201)
T TIGR01491 144 -TF---DNKG-----EAVERLKRELNPSLTETVAVGDS-KNDLPMFEV-ADISISL 188 (201)
T ss_pred -cc---ccHH-----HHHHHHHHHhCCCHHHEEEEcCC-HhHHHHHHh-cCCeEEE
Confidence 00 0000 11234455567777899999999 469987775 5885544
No 65
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.07 E-value=0.014 Score=54.47 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=61.2
Q ss_pred cccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEcc----CCCCCCCCCCCcE
Q 007924 322 LFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA----RKPEFFQMSHPLY 397 (585)
Q Consensus 322 kYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A----~KP~FF~~~~pf~ 397 (585)
-++..-|.+..+|..|+ .|.++.++||+.-+|+..+++.+ +..| .+||.|++.. .||.
T Consensus 42 ~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l-------~~~~-~~f~~i~~~~d~~~~KP~--------- 103 (148)
T smart00577 42 VYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL-------DPKK-YFGYRRLFRDECVFVKGK--------- 103 (148)
T ss_pred EEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh-------CcCC-CEeeeEEECccccccCCe---------
Confidence 44556789999999998 57899999999999999999876 2333 5679887754 2332
Q ss_pred EeecCCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhc
Q 007924 398 EVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQS 451 (585)
Q Consensus 398 ~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~s 451 (585)
| ..-.+.+|....+++||||.. .|+...
T Consensus 104 --------------------~-----~k~l~~l~~~p~~~i~i~Ds~-~~~~aa 131 (148)
T smart00577 104 --------------------Y-----VKDLSLLGRDLSNVIIIDDSP-DSWPFH 131 (148)
T ss_pred --------------------E-----eecHHHcCCChhcEEEEECCH-HHhhcC
Confidence 0 011344567778999999997 444443
No 66
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.40 E-value=0.0054 Score=62.92 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=31.6
Q ss_pred HHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 426 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 426 l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
..+.+|....+++||||.++.||.-.+. .||+|++|-
T Consensus 211 ~~~~~~~~~~~~lmIGD~~~tDI~~A~~-aGi~si~V~ 247 (279)
T TIGR01452 211 ITENFSIDPARTLMVGDRLETDILFGHR-CGMTTVLVL 247 (279)
T ss_pred HHHHhCCChhhEEEECCChHHHHHHHHH-cCCcEEEEC
Confidence 4555677788999999999999998885 699999993
No 67
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=95.24 E-value=0.11 Score=48.71 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=43.0
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEc
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVS 383 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ 383 (585)
+...|.+..+|..|++.|-++.++||+.-.++..+++.+ +|.++||.|++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~i~~~ 121 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI---------GEKDVFIEIYSN 121 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc---------CChhheeEEecc
Confidence 344577889999999999999999999999999988754 488999998853
No 68
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=95.16 E-value=0.094 Score=51.02 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=66.8
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
+...|....+|..++++|.++.++||+.-.++..++..+ .+..+|+..+... ++ .+ +
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~---------~i~~~~~~~~~~~-------~~-~~------~ 140 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL---------GLDAAFANRLEVE-------DG-KL------T 140 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc---------CCCceEeeEEEEE-------CC-EE------E
Confidence 345788999999999999999999999999999888765 1344565433221 00 00 0
Q ss_pred CccccccccCCCccccCCCHHHH---HHHhCCCCCcEEEEcCccccchhhccccCCceEE
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMI---ENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTA 460 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l---~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~ 460 (585)
|.... . .++..+....+ ++.++....+++||||+ .+|+...+. .|+..+
T Consensus 141 ~~~~~--~----~~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs-~~Di~aa~~-ag~~i~ 192 (219)
T TIGR00338 141 GLVEG--P----IVDASYKGKTLLILLRKEGISPENTVAVGDG-ANDLSMIKA-AGLGIA 192 (219)
T ss_pred EEecC--c----ccCCcccHHHHHHHHHHcCCCHHHEEEEECC-HHHHHHHHh-CCCeEE
Confidence 00000 0 01111233333 34556667799999999 599987765 488653
No 69
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=94.98 E-value=0.21 Score=49.22 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=35.7
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccc
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSF 363 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~ 363 (585)
+...|....+|..++++|.+++++||+.-.|+..++..++
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 112 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLI 112 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhC
Confidence 3456889999999999999999999999999999998764
No 70
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.95 E-value=0.036 Score=56.33 Aligned_cols=113 Identities=22% Similarity=0.278 Sum_probs=77.0
Q ss_pred cccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEe
Q 007924 320 PELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEV 399 (585)
Q Consensus 320 pekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~v 399 (585)
|=.+|.+|+.|+.+|+.|+..+| .+-||++=.-+.++.+++ | =.|.||.||+- ...+|.
T Consensus 95 Plq~LkPD~~LRnlLL~l~~r~k--~~FTNa~k~HA~r~Lk~L-------G--ieDcFegii~~-------e~~np~--- 153 (244)
T KOG3109|consen 95 PLQDLKPDPVLRNLLLSLKKRRK--WIFTNAYKVHAIRILKKL-------G--IEDCFEGIICF-------ETLNPI--- 153 (244)
T ss_pred cHhhcCCCHHHHHHHHhCccccE--EEecCCcHHHHHHHHHHh-------C--hHHhccceeEe-------eccCCC---
Confidence 55668999999999999999874 566999999999999988 3 67899999973 222222
Q ss_pred ecCCCc-cccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHhh
Q 007924 400 VTGEGL-MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 466 (585)
Q Consensus 400 d~~~g~-l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpEL 466 (585)
++.. -+| +.+......+..|+..++=.||=|.-.+.|...|. .||+|++|-.|=
T Consensus 154 --~~~~vcKP----------~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~-vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 154 --EKTVVCKP----------SEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKE-VGLKTVLVGREH 208 (244)
T ss_pred --CCceeecC----------CHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHh-ccceeEEEEeee
Confidence 1100 011 11222334555677755444444555678887775 699999997654
No 71
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=94.93 E-value=0.054 Score=55.31 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=59.8
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCC----ChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEee
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNS----DYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVV 400 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS----~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd 400 (585)
.+-+....+|..++++|.++|++||. .=.+++.+++++ .+.++|++|+..-.-+.
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l---------Gi~~~f~~i~~~d~~~~------------ 172 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF---------HIPAMNPVIFAGDKPGQ------------ 172 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh---------CCchheeEEECCCCCCC------------
Confidence 33344788999999999999999998 545777777655 25679987755321100
Q ss_pred cCCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 401 TGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 401 ~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
.++ .. ....+-.| -++||||++ .||...+. .|-++++|.
T Consensus 173 -----~Kp------~~-------~~~l~~~~----i~i~vGDs~-~DI~aAk~-AGi~~I~V~ 211 (237)
T TIGR01672 173 -----YQY------TK-------TQWIQDKN----IRIHYGDSD-NDITAAKE-AGARGIRIL 211 (237)
T ss_pred -----CCC------CH-------HHHHHhCC----CeEEEeCCH-HHHHHHHH-CCCCEEEEE
Confidence 000 00 00111112 179999999 89976664 588888873
No 72
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=94.67 E-value=0.015 Score=54.42 Aligned_cols=84 Identities=19% Similarity=0.334 Sum_probs=57.0
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
.-|....+|. ++.++||++-.+....++.+ ...+|||.||+.-. .|.
T Consensus 91 ~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~v~~~~~-----------------~~~ 137 (175)
T TIGR01493 91 PWPDSAAALA-------RVAILSNASHWAFDQFAQQA---------GLPWYFDRAFSVDT-----------------VRA 137 (175)
T ss_pred CCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC---------CCHHHHhhhccHhh-----------------cCC
Confidence 4467777776 37899999999999888765 27888998765321 011
Q ss_pred cccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccc
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKV 453 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk 453 (585)
.+| ...+| ....+.+|....+++|||||. .||..+++
T Consensus 138 ~KP-----~p~~f-----~~~~~~~~~~p~~~l~vgD~~-~Di~~A~~ 174 (175)
T TIGR01493 138 YKP-----DPVVY-----ELVFDTVGLPPDRVLMVAAHQ-WDLIGARK 174 (175)
T ss_pred CCC-----CHHHH-----HHHHHHHCCCHHHeEeEecCh-hhHHHHhc
Confidence 111 01223 234556688889999999994 79987764
No 73
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.66 E-value=0.04 Score=57.88 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=66.4
Q ss_pred CCchHHHHHHhHcCceEEEEcCCChHhhHhhhcc---cccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQH---SFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Y---l~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
|.+..+|..|++.|.++.++||.+...+..+++. ++ ...++|+.|+.. .||
T Consensus 34 ~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~--------~~~~~f~~~~~~-~~p----------------- 87 (320)
T TIGR01686 34 KTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFI--------LQAEDFDARSIN-WGP----------------- 87 (320)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCcccc--------CcHHHeeEEEEe-cCc-----------------
Confidence 5678899999999999999999999999999886 22 256889888665 232
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccC
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHL 455 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~ 455 (585)
..-+...+.+.+|..-.+++||||+.+ |+...+...
T Consensus 88 --------------k~~~i~~~~~~l~i~~~~~vfidD~~~-d~~~~~~~l 123 (320)
T TIGR01686 88 --------------KSESLRKIAKKLNLGTDSFLFIDDNPA-ERANVKITL 123 (320)
T ss_pred --------------hHHHHHHHHHHhCCCcCcEEEECCCHH-HHHHHHHHC
Confidence 122344566667888889999999987 777776543
No 74
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=94.58 E-value=0.14 Score=53.41 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=30.0
Q ss_pred HHHhCCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 427 ENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 427 ~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
.+.++...+++|-|||.+.+||.-.+. .||.|++|.-
T Consensus 200 l~~~~~~~~~~~mVGD~~~TDI~~a~~-~G~~t~LV~T 236 (269)
T COG0647 200 LEKLGLDRSEVLMVGDRLDTDILGAKA-AGLDTLLVLT 236 (269)
T ss_pred HHHhCCCcccEEEEcCCchhhHHHHHH-cCCCEEEEcc
Confidence 334455557999999999999998885 6999999954
No 75
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.53 E-value=0.36 Score=48.22 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=71.6
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
.-|.+..+|..|++.|.++-+.|||+-.-+..+++-+ .=.+|||.+|+.+.=+ .|
T Consensus 87 ~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~---------gl~~~f~~~v~~~dv~---------------~~- 141 (221)
T COG0637 87 PIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL---------GLLDYFDVIVTADDVA---------------RG- 141 (221)
T ss_pred CCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHc---------cChhhcchhccHHHHh---------------cC-
Confidence 3477899999999999999999999988888877643 2567899888765321 11
Q ss_pred cccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
+| .+-+|. .--+.+|....+++.|.|...|= .+-+..|-+++.|..
T Consensus 142 -KP-----~Pd~yL-----~Aa~~Lgv~P~~CvviEDs~~Gi--~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 142 -KP-----APDIYL-----LAAERLGVDPEECVVVEDSPAGI--QAAKAAGMRVVGVPA 187 (221)
T ss_pred -CC-----CCHHHH-----HHHHHcCCChHHeEEEecchhHH--HHHHHCCCEEEEecC
Confidence 11 122331 23456778889999999998873 333457899988864
No 76
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=94.50 E-value=0.019 Score=54.03 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=58.6
Q ss_pred HHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCcccccccc
Q 007924 333 ALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKA 412 (585)
Q Consensus 333 ~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l~~~~~l 412 (585)
.+.+|+++|.+++++||.+...+..++..+ | +.++|+- .||
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~-------g--i~~~~~~-----~~~------------------------- 76 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL-------G--ITHLYQG-----QSN------------------------- 76 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc-------C--CCEEEec-----ccc-------------------------
Confidence 689999999999999999999998877655 2 4455541 010
Q ss_pred CCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 413 RTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 413 ~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
+. --...+++.+|....+++||||.. .|+.-.+.. |- +++|-
T Consensus 77 -k~-----~~~~~~~~~~~~~~~~~~~vGDs~-~D~~~~~~a-g~-~~~v~ 118 (154)
T TIGR01670 77 -KL-----IAFSDILEKLALAPENVAYIGDDL-IDWPVMEKV-GL-SVAVA 118 (154)
T ss_pred -hH-----HHHHHHHHHcCCCHHHEEEECCCH-HHHHHHHHC-CC-eEecC
Confidence 00 112456666788888999999997 999877654 44 36654
No 77
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=93.93 E-value=0.18 Score=49.23 Aligned_cols=89 Identities=24% Similarity=0.311 Sum_probs=57.5
Q ss_pred CCCchHHHHHHhHcCc--eEEEEcCCC-------hHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcE
Q 007924 327 DPELPLALLDQKEAGK--KLLLITNSD-------YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLY 397 (585)
Q Consensus 327 dp~l~~~L~~lr~~GK--KlFLiTNS~-------~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~ 397 (585)
.|++..+|.++++.+. ++.+++||- ..-+..+-+-+ | ..++.-.|+||
T Consensus 61 ~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l-------g------Ipvl~h~~kKP---------- 117 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL-------G------IPVLRHRAKKP---------- 117 (168)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh-------C------CcEEEeCCCCC----------
Confidence 3677889999998764 699999993 44444333322 1 34455566776
Q ss_pred EeecCCCccccccccCCCccccCCCHHHHHHHhCC-----CCCcEEEEcCccccchhhccccCCceEEee
Q 007924 398 EVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNI-----HGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 398 ~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~-----~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
|+...+.+.++. +-+++..|||.++.||+-... .|-.|++|
T Consensus 118 -----------------------~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~-~G~~tilv 163 (168)
T PF09419_consen 118 -----------------------GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNR-MGSYTILV 163 (168)
T ss_pred -----------------------ccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhc-cCceEEEE
Confidence 222223333322 257899999999999998886 56556554
No 78
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=93.88 E-value=0.074 Score=50.58 Aligned_cols=82 Identities=24% Similarity=0.381 Sum_probs=60.8
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccC--CCCCCCCCCCcEEeecCCC
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSAR--KPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~--KP~FF~~~~pf~~vd~~~g 404 (585)
-|+...+|..|+++|.++.++|+.+...+..+.+.+ | ++|.+|..-. ||
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l-------g-----i~~~~v~a~~~~kP----------------- 179 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL-------G-----IFDSIVFARVIGKP----------------- 179 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT-------T-----SCSEEEEESHETTT-----------------
T ss_pred hhhhhhhhhhhhccCcceeeeecccccccccccccc-------c-----cccccccccccccc-----------------
Confidence 378899999999999999999999999999999965 2 1333332222 22
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhcc
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSK 452 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sK 452 (585)
. .++ ...+.+.++..+.+|+||||.+ .|+...|
T Consensus 180 --~-------~k~-----~~~~i~~l~~~~~~v~~vGDg~-nD~~al~ 212 (215)
T PF00702_consen 180 --E-------PKI-----FLRIIKELQVKPGEVAMVGDGV-NDAPALK 212 (215)
T ss_dssp --H-------HHH-----HHHHHHHHTCTGGGEEEEESSG-GHHHHHH
T ss_pred --c-------chh-----HHHHHHHHhcCCCEEEEEccCH-HHHHHHH
Confidence 0 011 1467777898888999999999 9987655
No 79
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=93.67 E-value=0.03 Score=56.15 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=60.1
Q ss_pred CCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCccc
Q 007924 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMR 407 (585)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l~ 407 (585)
+.+..+|..+++.|.++ ++||.+..|....+... +.-.+|+.+...+.+|.+. |+..
T Consensus 141 ~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~---------~~g~~~~~i~~~g~~~~~~-------------gKP~ 197 (242)
T TIGR01459 141 DEFDELFAPIVARKIPN-ICANPDRGINQHGIYRY---------GAGYYAELIKQLGGKVIYS-------------GKPY 197 (242)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEe---------cccHHHHHHHHhCCcEecC-------------CCCC
Confidence 34555677777788774 89999999997665432 1223555432112222111 1110
Q ss_pred cccccCCCccccCCCHHHHHHHhCCC-CCcEEEEcCccccchhhccccCCceEEee
Q 007924 408 PCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 408 ~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
+ .+ .....+.+|.. ..+++||||.+..||.-.+. .||+|++|
T Consensus 198 ~-------~~-----~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~-~G~~~i~v 240 (242)
T TIGR01459 198 P-------AI-----FHKALKECSNIPKNRMLMVGDSFYTDILGANR-LGIDTALV 240 (242)
T ss_pred H-------HH-----HHHHHHHcCCCCcccEEEECCCcHHHHHHHHH-CCCeEEEE
Confidence 0 01 12334445544 45899999999999998885 69999987
No 80
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=93.54 E-value=0.072 Score=51.65 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=74.7
Q ss_pred HHHhccchhhhHHHHH-cCcccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEE
Q 007924 302 ALFRAHVEGQLKSEIM-SKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMV 380 (585)
Q Consensus 302 Avd~vH~~G~lk~~i~-~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvV 380 (585)
.+|-|+.+|+++=--. +.+.+|=.+| ..-+.+|++.|.++.++||.+..+++..++.+- +.++|+.+
T Consensus 13 d~dGv~tdg~~~~~~~g~~~~~~~~~D---~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lg---------i~~~f~~~ 80 (169)
T TIGR02726 13 DVDGVMTDGRIVINDEGIESRNFDIKD---GMGVIVLQLCGIDVAIITSKKSGAVRHRAEELK---------IKRFHEGI 80 (169)
T ss_pred eCceeeECCeEEEcCCCcEEEEEecch---HHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCC---------CcEEEecC
Confidence 3566777776531111 1133444444 356788899999999999999999999999882 66777631
Q ss_pred EEccCCCCCCCCCCCcEEeecCCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceEE
Q 007924 381 IVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTA 460 (585)
Q Consensus 381 Iv~A~KP~FF~~~~pf~~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~ 460 (585)
|| +.. ....+.+.+|....+++||||.. .|+.-.+. .|+.-+
T Consensus 81 -----kp--------------------------kp~-----~~~~~~~~l~~~~~ev~~iGD~~-nDi~~~~~-ag~~~a 122 (169)
T TIGR02726 81 -----KK--------------------------KTE-----PYAQMLEEMNISDAEVCYVGDDL-VDLSMMKR-VGLAVA 122 (169)
T ss_pred -----CC--------------------------CHH-----HHHHHHHHcCcCHHHEEEECCCH-HHHHHHHH-CCCeEE
Confidence 11 000 23456666788888999999997 79987775 576654
Q ss_pred e
Q 007924 461 L 461 (585)
Q Consensus 461 a 461 (585)
.
T Consensus 123 m 123 (169)
T TIGR02726 123 V 123 (169)
T ss_pred C
Confidence 4
No 81
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=93.42 E-value=0.14 Score=48.97 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=63.1
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCcc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLM 406 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l 406 (585)
.|....+|.+++++|.++.++|||+-.++..+++++ + +..+|...+.. .++|..
T Consensus 89 ~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l-g--------~~~~~~~~l~~-----------------~~~g~~ 142 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL-G--------IDNAIGTRLEE-----------------SEDGIY 142 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc-C--------CcceEecceEE-----------------cCCCEE
Confidence 356678889999999999999999999999999865 1 44444431110 011111
Q ss_pred ccccccCCCccccCCCHHHHHHHh---CCCCCcEEEEcCccccchhhccccCCceEEeehH
Q 007924 407 RPCFKARTGGLYSGGSAQMIENSL---NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 407 ~~~~~l~~G~VYsgGn~~~l~~ll---g~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
.. +......+..+-...+.+++ +...++++|+||+. +|+--.+. .| ..++|.|
T Consensus 143 ~g--~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs~-~D~~~~~~-a~-~~~~v~~ 198 (202)
T TIGR01490 143 TG--NIDGNNCKGEGKVHALAELLAEEQIDLKDSYAYGDSI-SDLPLLSL-VG-HPYVVNP 198 (202)
T ss_pred eC--CccCCCCCChHHHHHHHHHHHHcCCCHHHcEeeeCCc-ccHHHHHh-CC-CcEEeCC
Confidence 10 01001112223333355544 45556899999999 89865553 33 4444443
No 82
>PHA02597 30.2 hypothetical protein; Provisional
Probab=93.27 E-value=0.18 Score=48.47 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=63.7
Q ss_pred ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc-ccccCCCCCCCCCCccEEEEccC-CCCCCCCCCCcEEeecC
Q 007924 325 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS-FNRFLPNDMGWRDLFNMVIVSAR-KPEFFQMSHPLYEVVTG 402 (585)
Q Consensus 325 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl-~~~~l~~g~dWrdyFDvVIv~A~-KP~FF~~~~pf~~vd~~ 402 (585)
..-|....+|.+|++.++ ++++||..-.........+ +. .-|-++|+.||+... ||. |
T Consensus 74 ~~~pG~~e~L~~L~~~~~-~~i~Tn~~~~~~~~~~~~~~l~------~~f~~~f~~i~~~~~~~~k------p------- 133 (197)
T PHA02597 74 SAYDDALDVINKLKEDYD-FVAVTALGDSIDALLNRQFNLN------ALFPGAFSEVLMCGHDESK------E------- 133 (197)
T ss_pred cCCCCHHHHHHHHHhcCC-EEEEeCCccchhHHHHhhCCHH------HhCCCcccEEEEeccCccc------H-------
Confidence 345788999999998875 6788997766655444333 11 224457777765443 210 0
Q ss_pred CCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccC-CceEEeehHh
Q 007924 403 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHL-RWRTALICRE 465 (585)
Q Consensus 403 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~-gWRT~aIVpE 465 (585)
.+ .....+.+| ..+++||||...+ +..++... |+.|+.+-..
T Consensus 134 -------------~~-----~~~a~~~~~--~~~~v~vgDs~~d-i~aA~~a~~Gi~~i~~~~~ 176 (197)
T PHA02597 134 -------------KL-----FIKAKEKYG--DRVVCFVDDLAHN-LDAAHEALSQLPVIHMLRG 176 (197)
T ss_pred -------------HH-----HHHHHHHhC--CCcEEEeCCCHHH-HHHHHHHHcCCcEEEecch
Confidence 00 122334445 3569999999988 77777633 9999999655
No 83
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=92.17 E-value=0.14 Score=42.48 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=34.9
Q ss_pred HHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHhh
Q 007924 424 QMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 466 (585)
Q Consensus 424 ~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpEL 466 (585)
....+.++....++++|||.+..||.-.+. .||+|++|.--.
T Consensus 11 ~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~-~G~~~ilV~tG~ 52 (75)
T PF13242_consen 11 EQALKRLGVDPSRCVMVGDSLETDIEAAKA-AGIDTILVLTGV 52 (75)
T ss_dssp HHHHHHHTSGGGGEEEEESSTTTHHHHHHH-TTSEEEEESSSS
T ss_pred HHHHHHcCCCHHHEEEEcCCcHhHHHHHHH-cCCcEEEECCCC
Confidence 345666788889999999999999999885 699999996533
No 84
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.16 E-value=0.23 Score=50.97 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=66.2
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCC-CccEEEEccCCCCCCCCCCCcEEeecCCCc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRD-LFNMVIVSARKPEFFQMSHPLYEVVTGEGL 405 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrd-yFDvVIv~A~KP~FF~~~~pf~~vd~~~g~ 405 (585)
.|....+|.+|++.|.+++++||.+..++..++.++- +.. +||.|+....-+.|..+.. .++
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~---------~~~~~f~~i~~~~~~~~~~~~~~--------~~k 251 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLR---------QTDIWFDDLIGRPPDMHFQREQG--------DKR 251 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHH---------HcCCchhhhhCCcchhhhcccCC--------CCC
Confidence 4677889999999999999999999999999999883 443 7998776653222221110 011
Q ss_pred cccccccCCCccccCCCHHHHHHHhCC-CCCcEEEEcCccccchhhccccCCceEEee
Q 007924 406 MRPCFKARTGGLYSGGSAQMIENSLNI-HGDEILYVGDHIYTDVSQSKVHLRWRTALI 462 (585)
Q Consensus 406 l~~~~~l~~G~VYsgGn~~~l~~llg~-~G~~VLYfGDHIygDIl~sKk~~gWRT~aI 462 (585)
-.+ .++. ..+.+ ++. .-.+++||||..+ ||...+ ..|-.+++|
T Consensus 252 p~p-------~~~~----~~l~~-~~~~~~~~~~~vgD~~~-d~~~a~-~~Gi~~i~v 295 (300)
T PHA02530 252 PDD-------VVKE----EIFWE-KIAPKYDVLLAVDDRDQ-VVDMWR-RIGLECWQV 295 (300)
T ss_pred CcH-------HHHH----HHHHH-HhccCceEEEEEcCcHH-HHHHHH-HhCCeEEEe
Confidence 111 0110 11233 344 3478999999964 444443 457777665
No 85
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=91.09 E-value=0.004 Score=67.66 Aligned_cols=197 Identities=7% Similarity=-0.175 Sum_probs=126.7
Q ss_pred CCCCCeeEecCccccCCccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCCCCCC--CCCccccccceEeecCCCc
Q 007924 137 RNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPVEGL--AFDPDLVIRGLVIDKEKGN 214 (585)
Q Consensus 137 ~~~~~~IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~~~L--~yDp~F~iRGLv~D~~~Gn 214 (585)
...+-.++++++|... +.+.+++++|++. |..+..+.+.|..--..|...++|...+ .+++-++.+|+.++...++
T Consensus 37 TL~~Y~~~~~esLay~-~~~~~l~~~Gyp~-~ll~~~~d~~f~~rGL~ld~~~GN~lKld~~~~vl~a~hg~rfls~~~~ 114 (424)
T KOG2469|consen 37 TLARYNLPEMESLAYD-LAQFLLKDKGYPN-ELLSTSFDWNFPCRGLVLDKERGNLLKLDRFGYVLRAAHGTRFLSNEEI 114 (424)
T ss_pred chhhhcccchHHHHHH-HHHHHHHhcCChh-hhhccccCccceeeeeEEeccCCceeeeeccCceeeeccccccccccch
Confidence 3456679999999998 9999999999998 7666555555544333445678886655 4699999999999999999
Q ss_pred EEeecCCCcEEEEEeccccCch--hHHHHHhcCccccccccccceehhcccchhHHHHHHHHHHHhhhCCCCCCCCCCCh
Q 007924 215 LVKADRFGYVKRAMHGTTMLSN--RAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDY 292 (585)
Q Consensus 215 LLKvD~~g~I~~a~HG~~~Ls~--eEi~e~Yg~~~i~l~~~~r~~~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y 292 (585)
..+.++.+ -.+++ -.+. ++..+....--+.++-++|+. +++..+ +.....+.+. ..+
T Consensus 115 ~eiyg~~~---------~~~~~~~~~~l----~t~F~~~ea~~~aq~vd~~d~-----~~~~~~--~~~dyk~~~~-~v~ 173 (424)
T KOG2469|consen 115 SEIYGRKL---------VRLSDSRYYLL----NTLFSMPEADLFAQAVDFLDN-----GPEYGP--VDMDYKPGWK-DVR 173 (424)
T ss_pred hhhccccc---------ccccCchhhhh----hhhhhchhHHHHHhhcchhhc-----CCccCc--cchhhcchHH-HHH
Confidence 99999887 12222 1111 111111111123334344442 222211 1111112111 336
Q ss_pred HHHHHHHHHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhh
Q 007924 293 KGLYKAVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMM 359 (585)
Q Consensus 293 ~~l~~DV~~Avd~vH~~G~lk~~i~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM 359 (585)
++++.+..++.-+.|+.|...+.|..+ ++++. .+..+.-.-+..--+ +.++.||++.-+++..|
T Consensus 174 ~~~~~~h~~~~lk~~~~~~pek~V~~d-~~~v~-~l~~~r~sGKk~fl~-Tns~~~ytd~~mt~~~~ 237 (424)
T KOG2469|consen 174 AAGNAVHLYGLLKKKMMGKPERYVVYD-GTIVP-LLSMLRDSGKKTFLH-TNSDWDYTDIFMAFHYG 237 (424)
T ss_pred HHHhHHHHHHHHHHHHhcCCCceeeec-Ccccc-chHHHHhhccceEEe-eccccchhhHHHHHHhC
Confidence 788888889998999999997776655 45554 444444443344445 47999999999999999
No 86
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=90.80 E-value=0.35 Score=51.30 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=56.1
Q ss_pred chhhhHHHHHcCccccc-ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCC
Q 007924 308 VEGQLKSEIMSKPELFV-EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARK 386 (585)
Q Consensus 308 ~~G~lk~~i~~npekYI-~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~K 386 (585)
.||+| ..+ ++=| .+||.+..+|..|+++|.++.|+||+.-+++...|+.+ ....|||+||++...
T Consensus 133 LDgTL----i~~-~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l---------GLd~YFdvIIs~Gdv 198 (301)
T TIGR01684 133 LDSTL----ITD-EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV---------KLDRYFDIIISGGHK 198 (301)
T ss_pred cCCCC----cCC-CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc---------CCCcccCEEEECCcc
Confidence 67887 333 4434 56899999999999999999999999999999888865 377899999999877
Q ss_pred CCCC
Q 007924 387 PEFF 390 (585)
Q Consensus 387 P~FF 390 (585)
..--
T Consensus 199 ~~~k 202 (301)
T TIGR01684 199 AEEY 202 (301)
T ss_pred ccCC
Confidence 5444
No 87
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=89.99 E-value=1.7 Score=42.64 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=35.9
Q ss_pred ccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 323 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 323 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
.+.-.|....+|..+++.|.++.++|||.-.|+..++..+
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 107 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI 107 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh
Confidence 4566788999999999999999999999999999998876
No 88
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=89.99 E-value=0.5 Score=53.67 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=30.3
Q ss_pred cCcccccccCCCchHHHHHHhHcCceEEEEcCCCh
Q 007924 318 SKPELFVEPDPELPLALLDQKEAGKKLLLITNSDY 352 (585)
Q Consensus 318 ~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~ 352 (585)
.||+.+...-|.++..|.+|+++|.+++++||..-
T Consensus 190 ~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 190 KGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred CCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 46777766678999999999999999999999766
No 89
>PRK08238 hypothetical protein; Validated
Probab=89.89 E-value=0.76 Score=51.60 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=39.7
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEcc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA 384 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A 384 (585)
.|+....+++++++|.++.|+|||+-.+++.+++++ | + ||.||..-
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l-------G--l---Fd~Vigsd 119 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL-------G--L---FDGVFASD 119 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-------C--C---CCEEEeCC
Confidence 467888999999999999999999999999999977 2 2 88888763
No 90
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=89.49 E-value=0.53 Score=50.03 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=54.5
Q ss_pred chhhhHHHHHcCccccc-ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCC
Q 007924 308 VEGQLKSEIMSKPELFV-EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARK 386 (585)
Q Consensus 308 ~~G~lk~~i~~npekYI-~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~K 386 (585)
.+|+|-. + ++=| .++|.+..+|..|++.|.++.++||.+-+++...++.+ .+..|||+||+....
T Consensus 135 ~D~TL~~----~-~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l---------gL~~yFDvII~~g~i 200 (303)
T PHA03398 135 LDSTLIT----D-EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET---------KLEGYFDIIICGGRK 200 (303)
T ss_pred cCCCccC----C-CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc---------CCCccccEEEECCCc
Confidence 5777632 2 3333 56899999999999999999999999999998888865 367999999998775
Q ss_pred CCCC
Q 007924 387 PEFF 390 (585)
Q Consensus 387 P~FF 390 (585)
.+--
T Consensus 201 ~~k~ 204 (303)
T PHA03398 201 AGEY 204 (303)
T ss_pred cccc
Confidence 4443
No 91
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=89.18 E-value=0.33 Score=47.03 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=58.5
Q ss_pred HHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCccccccc
Q 007924 332 LALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFK 411 (585)
Q Consensus 332 ~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l~~~~~ 411 (585)
..+.+|++.|.++.++||.+...+..++..+- +..+|+ +.+|
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lg---------l~~~f~-----g~~~------------------------ 96 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLG---------ITHLYQ-----GQSN------------------------ 96 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcC---------Cceeec-----CCCc------------------------
Confidence 46778889999999999999999999888761 333442 1000
Q ss_pred cCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCceE
Q 007924 412 ARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRT 459 (585)
Q Consensus 412 l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT 459 (585)
+ ..-+..+++.+|....+|+||||.+ .|+.-.+. .|...
T Consensus 97 --k-----~~~l~~~~~~~gl~~~ev~~VGDs~-~D~~~a~~-aG~~~ 135 (183)
T PRK09484 97 --K-----LIAFSDLLEKLAIAPEQVAYIGDDL-IDWPVMEK-VGLSV 135 (183)
T ss_pred --H-----HHHHHHHHHHhCCCHHHEEEECCCH-HHHHHHHH-CCCeE
Confidence 0 1223456677788889999999997 89987775 58773
No 92
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=88.08 E-value=1.2 Score=42.74 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=31.7
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
.-|....+|..|+++ .++.++||+...+++.++..+
T Consensus 69 ~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~ 104 (205)
T PRK13582 69 PLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL 104 (205)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc
Confidence 358888999999988 789999999999999988865
No 93
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=88.07 E-value=0.45 Score=48.31 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=31.5
Q ss_pred HHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 426 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 426 l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
+.+.++...++++||||++..||.-.+. .||+|++|-
T Consensus 187 ~~~~~~~~~~~~~~VGD~~~~Di~~a~~-~G~~~v~v~ 223 (249)
T TIGR01457 187 AVEHLGTEREETLMVGDNYLTDIRAGID-AGIDTLLVH 223 (249)
T ss_pred HHHHcCCCcccEEEECCCchhhHHHHHH-cCCcEEEEc
Confidence 4455677788999999999999998886 599999995
No 94
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=87.14 E-value=0.82 Score=43.65 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=47.0
Q ss_pred CcccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEE
Q 007924 319 KPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIV 382 (585)
Q Consensus 319 npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv 382 (585)
+..-||.+-|.+..+|..|.+. -.+.+.|++.-.|++.+++.+- .++.+|+.++.
T Consensus 36 ~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ld--------p~~~~f~~~l~ 90 (162)
T TIGR02251 36 IIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILD--------RGGKVISRRLY 90 (162)
T ss_pred EEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHC--------cCCCEEeEEEE
Confidence 4567889999999999999887 7899999999999999999873 35668877765
No 95
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=87.03 E-value=1 Score=51.07 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCchHHHHHHhHcC-ceEEEEcCCChHhhHhhhccc
Q 007924 328 PELPLALLDQKEAG-KKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 328 p~l~~~L~~lr~~G-KKlFLiTNS~~~Ytn~vM~Yl 362 (585)
|+...+|.+|++.| .++.++||.+...+..+++.+
T Consensus 387 ~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l 422 (556)
T TIGR01525 387 PEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL 422 (556)
T ss_pred HhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh
Confidence 67788999999999 999999999999999999977
No 96
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=85.66 E-value=0.91 Score=45.57 Aligned_cols=49 Identities=24% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhH--hhhcccccccCCCCCCCCC-CccEEEEcc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTD--KMMQHSFNRFLPNDMGWRD-LFNMVIVSA 384 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn--~vM~Yl~~~~l~~g~dWrd-yFDvVIv~A 384 (585)
-|....+|.+|+++|+++.++||+.-.... ..+..+ .+.. +||.||+.+
T Consensus 26 ~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~---------gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL---------GINADLPEMIISSG 77 (242)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC---------CCCccccceEEccH
Confidence 477889999999999999999999876654 333332 3555 899888865
No 97
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=85.27 E-value=1.8 Score=44.37 Aligned_cols=65 Identities=8% Similarity=0.092 Sum_probs=44.4
Q ss_pred hHHHHHcCcccccccCCCchHHHHHHhHcCceEEEEcCCC----hHhhHhhhcccccccCCCCCCC-CCCccEEEEcc
Q 007924 312 LKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSD----YHYTDKMMQHSFNRFLPNDMGW-RDLFNMVIVSA 384 (585)
Q Consensus 312 lk~~i~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~----~~Ytn~vM~Yl~~~~l~~g~dW-rdyFDvVIv~A 384 (585)
+.+...++...+..+-|....+|.++++.|.++|+|||.. -..++.+++.. | - | .++|++++.+.
T Consensus 101 fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~-g------i-p~~~~f~vil~gd 170 (237)
T PRK11009 101 FWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDF-H------I-PADNMNPVIFAGD 170 (237)
T ss_pred HHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHc-C------C-CcccceeEEEcCC
Confidence 4444555555566666778999999999999999999953 44566666522 2 1 2 56888877644
No 98
>PTZ00445 p36-lilke protein; Provisional
Probab=84.83 E-value=1.2 Score=45.33 Aligned_cols=147 Identities=16% Similarity=0.225 Sum_probs=93.6
Q ss_pred HHhccchhhhHHHHHcCcccccccC-CCchHHHHHHhHcCceEEEEcCCChHh--hHhhhcccccccCCCC--CCCCCCc
Q 007924 303 LFRAHVEGQLKSEIMSKPELFVEPD-PELPLALLDQKEAGKKLLLITNSDYHY--TDKMMQHSFNRFLPND--MGWRDLF 377 (585)
Q Consensus 303 vd~vH~~G~lk~~i~~npekYI~kd-p~l~~~L~~lr~~GKKlFLiTNS~~~Y--tn~vM~Yl~~~~l~~g--~dWrdyF 377 (585)
+=.+|..|...+. +++..++..- |++..|+.+|+++|-+|.++|=|+=.- .+.=-+|+-|..+-.. +.=.--|
T Consensus 54 lI~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~ 131 (219)
T PTZ00445 54 MITKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDF 131 (219)
T ss_pred hhhhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccc
Confidence 3457888876554 5777888764 789999999999999999999887543 1222222222211000 1114458
Q ss_pred cEEEEccCCCCCCCCCCCcEEeecCCCccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchhhccccCCc
Q 007924 378 NMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRW 457 (585)
Q Consensus 378 DvVIv~A~KP~FF~~~~pf~~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gW 457 (585)
++..|.|-=|.|+.+..-+.++ |..+|- ...+.|. ...+++-.|....++|+|=|. --.|..+++ .||
T Consensus 132 ~i~~~~~yyp~~w~~p~~y~~~----gl~KPd---p~iK~yH---le~ll~~~gl~peE~LFIDD~-~~NVeaA~~-lGi 199 (219)
T PTZ00445 132 KIKKVYAYYPKFWQEPSDYRPL----GLDAPM---PLDKSYH---LKQVCSDFNVNPDEILFIDDD-MNNCKNALK-EGY 199 (219)
T ss_pred eeeeeeeeCCcccCChhhhhhh----cccCCC---ccchHHH---HHHHHHHcCCCHHHeEeecCC-HHHHHHHHH-CCC
Confidence 9999999999999987655433 333331 0111230 134555567888899999777 445555554 799
Q ss_pred eEEeeh
Q 007924 458 RTALIC 463 (585)
Q Consensus 458 RT~aIV 463 (585)
.|+.+-
T Consensus 200 ~ai~f~ 205 (219)
T PTZ00445 200 IALHVT 205 (219)
T ss_pred EEEEcC
Confidence 999875
No 99
>PLN02645 phosphoglycolate phosphatase
Probab=84.13 E-value=0.85 Score=47.85 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=31.4
Q ss_pred HHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 426 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 426 l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
..+.+|.+..+++||||.+..||.-.+. .||+|++|.
T Consensus 239 a~~~~~~~~~~~~~VGD~~~~Di~~A~~-aG~~~ilV~ 275 (311)
T PLN02645 239 LANKFGIEKSQICMVGDRLDTDILFGQN-GGCKTLLVL 275 (311)
T ss_pred HHHHcCCCcccEEEEcCCcHHHHHHHHH-cCCCEEEEc
Confidence 4445677888999999999999998886 599999994
No 100
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.12 E-value=1.2 Score=45.45 Aligned_cols=42 Identities=29% Similarity=0.206 Sum_probs=29.3
Q ss_pred cccCCccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCCC
Q 007924 149 LNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (585)
Q Consensus 149 L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (585)
|+|++++.|-+|||+||..=+.. .-.... .++++|.+.|.+.
T Consensus 2 ~~~~~~~lI~~DlDGTLL~~~~~-i~~~~~-~ai~~l~~~Gi~~ 43 (271)
T PRK03669 2 LSLQDPLLIFTDLDGTLLDSHTY-DWQPAA-PWLTRLREAQVPV 43 (271)
T ss_pred CCcCCCeEEEEeCccCCcCCCCc-CcHHHH-HHHHHHHHcCCeE
Confidence 78999999999999999964321 212233 3356677788883
No 101
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=81.34 E-value=0.9 Score=47.94 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=25.8
Q ss_pred CcEEEEcCccccchhhccccCCceEEeehH
Q 007924 435 DEILYVGDHIYTDVSQSKVHLRWRTALICR 464 (585)
Q Consensus 435 ~~VLYfGDHIygDIl~sKk~~gWRT~aIVp 464 (585)
.++++|||.+++||.-.+. .||.|++|-.
T Consensus 264 ~~~~mIGD~~~tDI~ga~~-~G~~silV~t 292 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQN-YGWFSCLVKT 292 (321)
T ss_pred heEEEEcCChhhhhhhHHh-CCceEEEecc
Confidence 5899999999999998875 6999999953
No 102
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=81.32 E-value=1.3 Score=44.57 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=30.2
Q ss_pred HHHHHhCCCCCcE-EEEcCccccchhhccccCCceEEeeh
Q 007924 425 MIENSLNIHGDEI-LYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 425 ~l~~llg~~G~~V-LYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
...+.++...+++ +||||.+..||.-++. .||+|++|.
T Consensus 196 ~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~-~G~~~i~v~ 234 (236)
T TIGR01460 196 AALNLLQARPERRDVMVGDNLRTDILGAKN-AGFDTLLVL 234 (236)
T ss_pred HHHHHhCCCCccceEEECCCcHHHHHHHHH-CCCcEEEEe
Confidence 3455566666665 9999999999998875 699999983
No 103
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=81.15 E-value=5.7 Score=39.54 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=58.3
Q ss_pred cCCCchHHHH-HHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCC
Q 007924 326 PDPELPLALL-DQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 404 (585)
Q Consensus 326 kdp~l~~~L~-~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g 404 (585)
.-|.....|. .+++.|.++.++|||+-.|+..++.+.- |..-.++|=+ +. ++. ++|
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~---------~~~~~~~i~t---~l----------e~~-~gg 151 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSN---------FIHRLNLIAS---QI----------ERG-NGG 151 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhcc---------ccccCcEEEE---Ee----------EEe-CCc
Confidence 3577888885 6788999999999999999999997641 3333344322 11 221 112
Q ss_pred ccccccccCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccchh
Q 007924 405 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVS 449 (585)
Q Consensus 405 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIygDIl 449 (585)
.. .....|..|=+..+.+.+|......-..|||+ +|+-
T Consensus 152 ~~------~g~~c~g~~Kv~rl~~~~~~~~~~~~aYsDS~-~D~p 189 (210)
T TIGR01545 152 WV------LPLRCLGHEKVAQLEQKIGSPLKLYSGYSDSK-QDNP 189 (210)
T ss_pred eE------cCccCCChHHHHHHHHHhCCChhheEEecCCc-ccHH
Confidence 21 11224445555567777764334455679998 8864
No 104
>PRK10444 UMP phosphatase; Provisional
Probab=79.79 E-value=1.7 Score=44.49 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=31.3
Q ss_pred HHHHhCCCCCcEEEEcCccccchhhccccCCceEEeeh
Q 007924 426 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 463 (585)
Q Consensus 426 l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIV 463 (585)
..+.++....+++||||.+..||.-.+. .||+|++|-
T Consensus 183 ~~~~~~~~~~~~v~IGD~~~tDi~~A~~-~G~~~vlV~ 219 (248)
T PRK10444 183 ALNKMQAHSEETVIVGDNLRTDILAGFQ-AGLETILVL 219 (248)
T ss_pred HHHHcCCCcccEEEECCCcHHHHHHHHH-cCCCEEEEC
Confidence 4455677788999999999999998885 699999994
No 105
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=79.03 E-value=2.1 Score=48.46 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=32.6
Q ss_pred CCchHHHHHHhHcCc-eEEEEcCCChHhhHhhhccc
Q 007924 328 PELPLALLDQKEAGK-KLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 328 p~l~~~L~~lr~~GK-KlFLiTNS~~~Ytn~vM~Yl 362 (585)
|+....+++|++.|. ++.++||.+...+..+++.+
T Consensus 365 ~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l 400 (536)
T TIGR01512 365 PDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL 400 (536)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc
Confidence 677889999999999 99999999999999999977
No 106
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=77.53 E-value=10 Score=38.99 Aligned_cols=113 Identities=19% Similarity=0.349 Sum_probs=70.4
Q ss_pred cCCCchHHHHHH--hHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 326 PDPELPLALLDQ--KEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 326 kdp~l~~~L~~l--r~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
-+|.++.++..+ ...|-.+.+|++|.--|.+.+++.- .=+++|+=|+++ |..|.++-- ..|.+..
T Consensus 72 ~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~---------gl~~~f~~I~TN---pa~~~~~G~-l~v~pyh 138 (234)
T PF06888_consen 72 IDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH---------GLRDCFSEIFTN---PACFDADGR-LRVRPYH 138 (234)
T ss_pred CCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC---------CCccccceEEeC---CceecCCce-EEEeCcc
Confidence 357778888888 3568889999999999999999844 367899888886 345543211 1222211
Q ss_pred CccccccccCCCccccCCC-H--HHHHHHhC------CCCCcEEEEcCccccchhhccccCCceEEe
Q 007924 404 GLMRPCFKARTGGLYSGGS-A--QMIENSLN------IHGDEILYVGDHIYTDVSQSKVHLRWRTAL 461 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn-~--~~l~~llg------~~G~~VLYfGDHIygDIl~sKk~~gWRT~a 461 (585)
. +.+. -++-| + ..+.+++. ..-++|+||||- .+|.-.+++...-+.++
T Consensus 139 ~--------h~C~-~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG-~nD~Cp~~~L~~~D~v~ 195 (234)
T PF06888_consen 139 S--------HGCS-LCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDG-RNDFCPALRLRPRDVVF 195 (234)
T ss_pred C--------CCCC-cCCCccchHHHHHHHHHHHhhcCCCcceEEEECCC-CCCcCcccccCCCCEEe
Confidence 1 1111 11111 1 12444443 334899999998 58888777654445454
No 107
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=77.11 E-value=3.7 Score=39.25 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=39.0
Q ss_pred CcccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 319 KPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 319 npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
+...|+.+-|.+..+|.++.+. .++.+.||+.-.|++.+++++
T Consensus 52 ~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l 94 (156)
T TIGR02250 52 TMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI 94 (156)
T ss_pred CeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh
Confidence 5677888999999999999855 899999999999999999988
No 108
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=75.90 E-value=2.6 Score=41.14 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchhhccc
Q 007924 423 AQMIENSLNIHGDEILYVGDHIYTDVSQSKV 453 (585)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDIl~sKk 453 (585)
...+.+.+|+...++++|||..- |+--.+.
T Consensus 152 i~~l~~~~~i~~~~~i~iGDs~N-D~~ml~~ 181 (215)
T TIGR01487 152 VEKLKELLGIKPEEVAAIGDSEN-DIDLFRV 181 (215)
T ss_pred HHHHHHHhCCCHHHEEEECCCHH-HHHHHHh
Confidence 34577778999899999999887 7776653
No 109
>PHA02597 30.2 hypothetical protein; Provisional
Probab=75.66 E-value=2.1 Score=41.05 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=13.1
Q ss_pred ccEEEEecccceee
Q 007924 154 ISAIGYDMDYTLMH 167 (585)
Q Consensus 154 I~~iGFDmDYTLa~ 167 (585)
++++-||||+||+-
T Consensus 2 ~k~viFDlDGTLiD 15 (197)
T PHA02597 2 KPTILTDVDGVLLS 15 (197)
T ss_pred CcEEEEecCCceEc
Confidence 68999999999998
No 110
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=75.24 E-value=2.5 Score=42.58 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=26.3
Q ss_pred CccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCCC
Q 007924 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (585)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (585)
.++.+.||||+||...+.. ...-. ..+++++.+.|.+.
T Consensus 2 ~~kli~~DlDGTLl~~~~~-i~~~~-~~al~~~~~~g~~v 39 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT-ISPET-KEALARLREKGVKV 39 (264)
T ss_pred CeeEEEEcCCCCccCCCCc-cCHHH-HHHHHHHHHCCCEE
Confidence 5789999999999999976 22222 22334566778873
No 111
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=75.07 E-value=6.8 Score=38.90 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=32.3
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
..|....++..+++.| ++.++||+.-.++..+++.+
T Consensus 69 l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l 104 (203)
T TIGR02137 69 PLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL 104 (203)
T ss_pred CCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc
Confidence 3688899999999887 89999999999999999876
No 112
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=74.96 E-value=2.9 Score=37.04 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=24.7
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHhhhc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQ 360 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~ 360 (585)
-|.-..++.+|+++||+++++||+.-.=....+.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~ 49 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAK 49 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHH
Confidence 3777899999999999999999998433333333
No 113
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=74.58 E-value=22 Score=37.60 Aligned_cols=105 Identities=9% Similarity=0.091 Sum_probs=66.6
Q ss_pred cccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCC
Q 007924 324 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 403 (585)
Q Consensus 324 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~ 403 (585)
+...|....++..|+++|-++.++|++.-.++..++..+ .|.+.|+.|+.+ +.+++ ++
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l---------gl~~~~~~IvSN------------~L~f~-~d 177 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA---------GVYHPNVKVVSN------------FMDFD-ED 177 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc---------CCCCcCceEEee------------eEEEC-CC
Confidence 344788999999999999999999999999999998864 254455444332 11222 22
Q ss_pred CccccccccCCCccccCCCHHHHH----HHhC--CCCCcEEEEcCccccchhhcccc
Q 007924 404 GLMRPCFKARTGGLYSGGSAQMIE----NSLN--IHGDEILYVGDHIYTDVSQSKVH 454 (585)
Q Consensus 404 g~l~~~~~l~~G~VYsgGn~~~l~----~llg--~~G~~VLYfGDHIygDIl~sKk~ 454 (585)
|.+.. ....-|-.+|....+. +.++ ....+|++|||.+- |+.-..-.
T Consensus 178 GvltG---~~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~-Dl~ma~g~ 230 (277)
T TIGR01544 178 GVLKG---FKGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQG-DLRMADGV 230 (277)
T ss_pred CeEeC---CCCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChh-hhhHhcCC
Confidence 33322 1112233444444433 3455 55678999999985 77765543
No 114
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=72.83 E-value=1.9 Score=43.21 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=16.9
Q ss_pred ccCCccEEEEecccceeecC
Q 007924 150 NLRSISAIGYDMDYTLMHYN 169 (585)
Q Consensus 150 ~L~~I~~iGFDmDYTLa~Y~ 169 (585)
+|..|++|-||||+||+--.
T Consensus 6 ~~~~~k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 6 PLGRISALTFDLDDTLYDNR 25 (238)
T ss_pred CCCCceeEEEcCcccccCCh
Confidence 35579999999999999765
No 115
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=72.36 E-value=4 Score=42.42 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=26.4
Q ss_pred CCccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 152 RSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 152 ~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
+.+++|-||||+||+-.. +.+.++...+.+.++|+|
T Consensus 38 ~~~k~VIFDlDGTLvDS~----~~~~~~a~~~~l~~~G~~ 73 (286)
T PLN02779 38 ALPEALLFDCDGVLVETE----RDGHRVAFNDAFKEFGLR 73 (286)
T ss_pred cCCcEEEEeCceeEEccc----cHHHHHHHHHHHHHcCCC
Confidence 457999999999999753 144555555666778985
No 116
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=70.92 E-value=4.8 Score=40.62 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=24.6
Q ss_pred cCCccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 151 LRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 151 L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
++.|+++-||||+||+--. ...++...+.+.++|++
T Consensus 19 ~~~~k~viFDlDGTLiDs~-----~~~~~a~~~~~~~~g~~ 54 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSD-----PLHYYAFREMLQEINFN 54 (248)
T ss_pred cCccCEEEEcCCCccCcCH-----HHHHHHHHHHHHHhccc
Confidence 4568999999999999653 34444444555666654
No 117
>PRK09449 dUMP phosphatase; Provisional
Probab=69.96 E-value=4 Score=39.78 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=21.5
Q ss_pred CccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
.|++|-||||+||+.+.. ++.+.+.+...|++
T Consensus 2 ~~k~iiFDlDGTLid~~~-------~~~~~~~~~~~g~~ 33 (224)
T PRK09449 2 KYDWILFDADETLFHFDA-------FAGLQRMFSRYGVD 33 (224)
T ss_pred CccEEEEcCCCchhcchh-------hHHHHHHHHHhCCC
Confidence 489999999999997431 23333344556765
No 118
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=69.52 E-value=2.8 Score=37.61 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=22.8
Q ss_pred cEEEEecccceee---cCccchHHHHHHHHHH---HHHhcCCCC
Q 007924 155 SAIGYDMDYTLMH---YNVMAWEGRAYDYCMV---NLRNMGFPV 192 (585)
Q Consensus 155 ~~iGFDmDYTLa~---Y~~~~~e~L~y~~~~~---~Lv~~gYP~ 192 (585)
+++-||||+||.. |..+.-+...|..+.+ .|.+.||+.
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l 44 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKV 44 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEE
Confidence 5788999999994 2222223334555444 455667773
No 119
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=67.10 E-value=8.6 Score=40.88 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=56.0
Q ss_pred HcCcccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCC
Q 007924 317 MSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMS 393 (585)
Q Consensus 317 ~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~ 393 (585)
..+-+.=-.++|.+...|.+|++.|..|.|=+-..-+++...|+-+- =.+|||+||+..+|-+-....
T Consensus 134 Itd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~---------L~~~Fd~ii~~G~~~~~~~~~ 201 (297)
T PF05152_consen 134 ITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELK---------LEGYFDIIICGGNKAGEYNSR 201 (297)
T ss_pred cccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhC---------CccccEEEEeCCccCCcCCcc
Confidence 33444444688999999999999999999999999999999999762 238999999999998877644
No 120
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=66.80 E-value=5.5 Score=38.39 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=15.7
Q ss_pred ccEEEEecccceeecCcc
Q 007924 154 ISAIGYDMDYTLMHYNVM 171 (585)
Q Consensus 154 I~~iGFDmDYTLa~Y~~~ 171 (585)
|+++-||||+||+.+.+.
T Consensus 1 ~k~viFD~DGTL~d~~~~ 18 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAA 18 (224)
T ss_pred CCEEEEcCcCcccccchH
Confidence 688999999999998753
No 121
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=66.69 E-value=7.1 Score=44.56 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=32.3
Q ss_pred CCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
|+...++++|++.|.++.++||.+-.+++.+++.+
T Consensus 408 ~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l 442 (562)
T TIGR01511 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL 442 (562)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc
Confidence 56778899999999999999999999999999987
No 122
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=66.35 E-value=6.6 Score=36.48 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=33.8
Q ss_pred cCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 326 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 326 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
..|....+|..++++|.++.++|+|.-.|+..++..+
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~ 110 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL 110 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 4688899999999999999999999999999998876
No 123
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=66.19 E-value=6.5 Score=39.33 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchhhccccCCc
Q 007924 423 AQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRW 457 (585)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gW 457 (585)
+..+++.+|+..++|++|||.. .|+--.+. .|+
T Consensus 204 l~~l~~~~gi~~~e~i~~GD~~-NDi~m~~~-ag~ 236 (272)
T PRK10530 204 LTQWVEAQGWSMKNVVAFGDNF-NDISMLEA-AGL 236 (272)
T ss_pred HHHHHHHcCCCHHHeEEeCCCh-hhHHHHHh-cCc
Confidence 4567788899999999999995 78876654 344
No 124
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=64.73 E-value=20 Score=36.02 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=36.3
Q ss_pred ccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 321 ELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 321 ekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
+.|+.--|....++..+++.|-++++||.|.-.|++.++..+
T Consensus 73 ~~~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l 114 (212)
T COG0560 73 EEFLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL 114 (212)
T ss_pred HhcCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh
Confidence 333445688889999999999999999999999999999977
No 125
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=64.20 E-value=8.7 Score=36.40 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=19.9
Q ss_pred cEEEEecccceeecCccchHHHHHHHHH-HHH-HhcCCC
Q 007924 155 SAIGYDMDYTLMHYNVMAWEGRAYDYCM-VNL-RNMGFP 191 (585)
Q Consensus 155 ~~iGFDmDYTLa~Y~~~~~e~L~y~~~~-~~L-v~~gYP 191 (585)
++|-||||+||+--... +. -+++.++ +.+ ..+|.|
T Consensus 1 ~~viFDlDGTL~ds~~~-~~-~~~~~~~~~~~~~~~g~~ 37 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAG-IF-LQIDRNITEFVAARLKLS 37 (184)
T ss_pred CeEEEeCCCCCCCCccc-HH-HHHHHHHHHHHHHHcCcC
Confidence 57899999999943221 12 2333332 333 356776
No 126
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=62.97 E-value=8.8 Score=36.82 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=20.3
Q ss_pred cEEEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 155 SAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 155 ~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
+++-||||+||+.-... ...++..+ +.++|.|
T Consensus 1 k~viFDlDGTL~d~~~~--~~~a~~~~---~~~~g~~ 32 (203)
T TIGR02252 1 KLITFDAVGTLLALKEP--VGEVYCEI---ARKYGVE 32 (203)
T ss_pred CeEEEecCCceeeeCCC--HHHHHHHH---HHHhCCC
Confidence 47899999999986532 22244333 3456776
No 127
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=62.39 E-value=8.9 Score=38.07 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=25.4
Q ss_pred CccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCCC
Q 007924 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (585)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (585)
-++++-||||+||+--. .+.++...+.+.++|+|.
T Consensus 11 ~~k~viFD~DGTL~Ds~-----~~~~~a~~~~~~~~g~~~ 45 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSA-----PDMLATVNAMLAARGRAP 45 (229)
T ss_pred cCCEEEEcCcCccccCH-----HHHHHHHHHHHHHCCCCC
Confidence 45799999999999753 345555555667788873
No 128
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=62.05 E-value=7.5 Score=39.09 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchhhcc
Q 007924 423 AQMIENSLNIHGDEILYVGDHIYTDVSQSK 452 (585)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDIl~sK 452 (585)
+..+++.+|+...+|+.|||. ..|+-=.+
T Consensus 201 l~~l~~~~gi~~~~v~afGD~-~NDi~Ml~ 229 (270)
T PRK10513 201 VKSLAEHLGIKPEEVMAIGDQ-ENDIAMIE 229 (270)
T ss_pred HHHHHHHhCCCHHHEEEECCc-hhhHHHHH
Confidence 456888899999999999998 35665444
No 129
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=61.65 E-value=6 Score=36.93 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=13.2
Q ss_pred cEEEEecccceeecC
Q 007924 155 SAIGYDMDYTLMHYN 169 (585)
Q Consensus 155 ~~iGFDmDYTLa~Y~ 169 (585)
++|.||+|+||+..+
T Consensus 2 K~i~~DiDGTL~~~~ 16 (126)
T TIGR01689 2 KRLVMDLDNTITLTE 16 (126)
T ss_pred CEEEEeCCCCcccCC
Confidence 689999999998764
No 130
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=61.22 E-value=8.2 Score=37.70 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchhhccccCCce
Q 007924 423 AQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWR 458 (585)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWR 458 (585)
+..+++.+|+...++++|||..- |+--.+. .|+-
T Consensus 162 l~~l~~~~~i~~~~~i~~GD~~N-Di~m~~~-ag~~ 195 (230)
T PRK01158 162 LKKLAELMGIDPEEVAAIGDSEN-DLEMFEV-AGFG 195 (230)
T ss_pred HHHHHHHhCCCHHHEEEECCchh-hHHHHHh-cCce
Confidence 45678888999999999999876 8876654 3553
No 131
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=60.78 E-value=5.7 Score=38.15 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=24.8
Q ss_pred CccEEEEecccceeecCccc-h----HHH--HHHHHH---HHHHhcCCCCC
Q 007924 153 SISAIGYDMDYTLMHYNVMA-W----EGR--AYDYCM---VNLRNMGFPVE 193 (585)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~-~----e~L--~y~~~~---~~Lv~~gYP~~ 193 (585)
..+++-||+||||...++.. + +.. .|+.+. +.|.+.||+.-
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~ 62 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIV 62 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEE
Confidence 45889999999999754321 1 111 344444 45566788743
No 132
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=59.70 E-value=11 Score=35.20 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.2
Q ss_pred ccEEEEecccceeecC
Q 007924 154 ISAIGYDMDYTLMHYN 169 (585)
Q Consensus 154 I~~iGFDmDYTLa~Y~ 169 (585)
|++|-||+|+||+-..
T Consensus 1 ~~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTA 16 (185)
T ss_pred CCeEEEcCCCcccCCh
Confidence 5789999999999875
No 133
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=58.66 E-value=5.5 Score=39.67 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=16.6
Q ss_pred cccCCccEEEEecccceeec
Q 007924 149 LNLRSISAIGYDMDYTLMHY 168 (585)
Q Consensus 149 L~L~~I~~iGFDmDYTLa~Y 168 (585)
+....|++|-||||+||+-.
T Consensus 5 ~~~~~~k~vIFDlDGTL~d~ 24 (224)
T PRK14988 5 IAWQDVDTVLLDMDGTLLDL 24 (224)
T ss_pred CCcccCCEEEEcCCCCccch
Confidence 34457899999999999984
No 134
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=58.17 E-value=8.5 Score=36.90 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=15.4
Q ss_pred HhCCCCCcEEEEcCccccchhhc
Q 007924 429 SLNIHGDEILYVGDHIYTDVSQS 451 (585)
Q Consensus 429 llg~~G~~VLYfGDHIygDIl~s 451 (585)
.++..+.+++||||.. .|+.-.
T Consensus 139 ~~~~~~~~~v~iGDs~-~D~~~~ 160 (205)
T PRK13582 139 ALKSLGYRVIAAGDSY-NDTTML 160 (205)
T ss_pred HHHHhCCeEEEEeCCH-HHHHHH
Confidence 3344567899999996 786433
No 135
>PTZ00174 phosphomannomutase; Provisional
Probab=57.85 E-value=12 Score=37.88 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=25.7
Q ss_pred CccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
+++.|.||||+||..-+.+ +..-. .-++++|.+.|..
T Consensus 4 ~~klia~DlDGTLL~~~~~-is~~~-~~ai~~l~~~Gi~ 40 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP-ITQEM-KDTLAKLKSKGFK 40 (247)
T ss_pred CCeEEEEECcCCCcCCCCC-CCHHH-HHHHHHHHHCCCE
Confidence 4899999999999976543 33333 3445667777765
No 136
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=57.00 E-value=9 Score=36.66 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=28.3
Q ss_pred HcCcccccccCCCchHHHHHHhHcCceEEEEcCC
Q 007924 317 MSKPELFVEPDPELPLALLDQKEAGKKLLLITNS 350 (585)
Q Consensus 317 ~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS 350 (585)
.++|+.++.-.|.++..|.+|.+.|.+++++||-
T Consensus 21 ~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 21 PKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp -SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred cCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3478888888888999999999999999999995
No 137
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=56.08 E-value=11 Score=38.35 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCC-CcEEEEcCccccchhhccccCCceEE
Q 007924 423 AQMIENSLNIHG-DEILYVGDHIYTDVSQSKVHLRWRTA 460 (585)
Q Consensus 423 ~~~l~~llg~~G-~~VLYfGDHIygDIl~sKk~~gWRT~ 460 (585)
...+.+.+|+.. .+|++|||..- |+--.+ ..|...+
T Consensus 195 l~~l~~~~~i~~~~~v~~~GDs~N-Di~m~~-~ag~~va 231 (273)
T PRK00192 195 VRWLKELYRRQDGVETIALGDSPN-DLPMLE-AADIAVV 231 (273)
T ss_pred HHHHHHHHhccCCceEEEEcCChh-hHHHHH-hCCeeEE
Confidence 567788889998 99999999987 766554 3454443
No 138
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=55.85 E-value=12 Score=35.11 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=24.2
Q ss_pred ccEEEEecccceee----cCccc--hHHHHH--HHHHHHHHhcCCCC
Q 007924 154 ISAIGYDMDYTLMH----YNVMA--WEGRAY--DYCMVNLRNMGFPV 192 (585)
Q Consensus 154 I~~iGFDmDYTLa~----Y~~~~--~e~L~y--~~~~~~Lv~~gYP~ 192 (585)
|+++-||||+||.. |.... ...+-. ..+++.|.+.||..
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~~~i~~Lk~~G~~i 47 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDGYGIRCALKSGIEV 47 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhHHHHHHHHHCCCEE
Confidence 67899999999998 43331 111100 12677787777764
No 139
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=55.72 E-value=6.7 Score=37.56 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=12.9
Q ss_pred cEEEEecccceeecCcc
Q 007924 155 SAIGYDMDYTLMHYNVM 171 (585)
Q Consensus 155 ~~iGFDmDYTLa~Y~~~ 171 (585)
++.+||+|+||+.-++.
T Consensus 1 Kia~fD~DgTLi~~~s~ 17 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSG 17 (159)
T ss_dssp SEEEE-SCTTTEE-STS
T ss_pred CEEEEeCCCCccCCCCC
Confidence 57899999999999764
No 140
>PRK10976 putative hydrolase; Provisional
Probab=55.02 E-value=12 Score=37.53 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchhhc
Q 007924 423 AQMIENSLNIHGDEILYVGDHIYTDVSQS 451 (585)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDIl~s 451 (585)
+..+++.+|+..++|+.|||.. -||-=-
T Consensus 195 l~~l~~~lgi~~~~viafGD~~-NDi~Ml 222 (266)
T PRK10976 195 LEAVAKKLGYSLKDCIAFGDGM-NDAEML 222 (266)
T ss_pred HHHHHHHcCCCHHHeEEEcCCc-ccHHHH
Confidence 4568889999999999999983 565443
No 141
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=54.00 E-value=15 Score=34.41 Aligned_cols=101 Identities=9% Similarity=0.108 Sum_probs=62.8
Q ss_pred ccchhhhHHHHHcCccccc--ccCCCchHHHHHHhHcCceEEEEcCCChHhhH------------hhhcccccccCCCCC
Q 007924 306 AHVEGQLKSEIMSKPELFV--EPDPELPLALLDQKEAGKKLLLITNSDYHYTD------------KMMQHSFNRFLPNDM 371 (585)
Q Consensus 306 vH~~G~lk~~i~~npekYI--~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn------------~vM~Yl~~~~l~~g~ 371 (585)
+..+|+| +..+.+.|. ...++....|.++++.|-+++++|.-+..... .+..|+-
T Consensus 6 ~DiDGTL---~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~-------- 74 (126)
T TIGR01689 6 MDLDNTI---TLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLN-------- 74 (126)
T ss_pred EeCCCCc---ccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHH--------
Confidence 3467887 233445564 34566777888888999999999999988876 6666663
Q ss_pred CCCCCccEEEEccCCC---CCCCCCCCcEEeecCCCccccccccCCCccccCCCHHHHHHHhCCCC
Q 007924 372 GWRDLFNMVIVSARKP---EFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHG 434 (585)
Q Consensus 372 dWrdyFDvVIv~A~KP---~FF~~~~pf~~vd~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G 434 (585)
.|.=-||=|++..--| +|+-+.+-. +...+.+=|..++++|++...
T Consensus 75 k~~ipYd~l~~~kp~~~~~~~~~dD~~i-----------------r~~~~~~~~~~~~~~~~~~~~ 123 (126)
T TIGR01689 75 QHNVPYDEIYVGKPWCGHDGFYVDDRAI-----------------RPSEFSSLTYDEINTLTKIDK 123 (126)
T ss_pred HcCCCCceEEeCCCcCCCCCceecchhh-----------------CHHHHHhcCHHHHHHHHhhcc
Confidence 3555567777654322 244333321 123344556666777776543
No 142
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=53.50 E-value=11 Score=32.15 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.5
Q ss_pred EEEEecccceeecCc
Q 007924 156 AIGYDMDYTLMHYNV 170 (585)
Q Consensus 156 ~iGFDmDYTLa~Y~~ 170 (585)
++-||+|+||+.-++
T Consensus 1 ~~vfD~D~tl~~~~~ 15 (139)
T cd01427 1 AVLFDLDGTLLDSEP 15 (139)
T ss_pred CeEEccCCceEccCc
Confidence 367999999988874
No 143
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=53.29 E-value=12 Score=35.95 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=18.6
Q ss_pred EEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 157 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
+-||||+||+-- +...++...+.+.+.|.|
T Consensus 1 viFD~DGTL~Ds-----~~~~~~~~~~~~~~~~~~ 30 (213)
T TIGR01449 1 VLFDLDGTLVDS-----APDIAAAVNMALAALGLP 30 (213)
T ss_pred CeecCCCccccC-----HHHHHHHHHHHHHHCCCC
Confidence 359999999942 223344444445567776
No 144
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=53.20 E-value=11 Score=40.21 Aligned_cols=81 Identities=15% Similarity=0.034 Sum_probs=46.4
Q ss_pred ccchhHHHHHHHHHHHhhhCCCCCCCCCCChHHHHHHHHHHHHhccchhhhHHHHHcCccccccc--------CCCchHH
Q 007924 262 LFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFVEP--------DPELPLA 333 (585)
Q Consensus 262 lFslpEa~L~a~lVd~~d~~~~~~~l~~~~y~~l~~DV~~Avd~vH~~G~lk~~i~~npekYI~k--------dp~l~~~ 333 (585)
...+...|+|+++ -.+.......-..+.-.+|.+.++.-+...+ + .+--..||-- +|.|..+
T Consensus 31 ~~~Cs~~CvyC~~--G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g-~-------ea~~pd~vtis~~GEPTLy~~L~el 100 (296)
T COG0731 31 KKWCSYNCVYCWR--GRTKKGTPERPEFIVEESILEELKLLLGYKG-D-------EATEPDHVTISLSGEPTLYPNLGEL 100 (296)
T ss_pred hhhhcCCCeEEec--ccCCCCCCCCCceecHHHHHHHHHHHhcccc-c-------ccCCCCEEEEeCCCCcccccCHHHH
Confidence 3345566888877 1111111111122556677777666554432 0 1112233311 4678888
Q ss_pred HHHHhHcC-ceEEEEcCCCh
Q 007924 334 LLDQKEAG-KKLLLITNSDY 352 (585)
Q Consensus 334 L~~lr~~G-KKlFLiTNS~~ 352 (585)
++.+++.| +++|||||+.-
T Consensus 101 I~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 101 IEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred HHHHHhcCCceEEEEeCCCh
Confidence 88889999 79999999987
No 145
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=52.65 E-value=12 Score=37.48 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=22.4
Q ss_pred EEEEecccceeecCccchHHHHHHHHHHHHHhcCCCC
Q 007924 156 AIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (585)
Q Consensus 156 ~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (585)
+|-||||+||.. +...... -..++++|.+.|.|.
T Consensus 1 li~~DlDGTLl~-~~~~~~~--~~~ai~~l~~~G~~~ 34 (225)
T TIGR02461 1 VIFTDLDGTLLP-PGYEPGP--AREALEELKDLGFPI 34 (225)
T ss_pred CEEEeCCCCCcC-CCCCchH--HHHHHHHHHHCCCEE
Confidence 367999999998 4333332 234455677788883
No 146
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=52.63 E-value=12 Score=37.97 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchh
Q 007924 423 AQMIENSLNIHGDEILYVGDHIYTDVS 449 (585)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDIl 449 (585)
+..+++.+|+...+|+-|||.- -||-
T Consensus 193 l~~l~~~~gi~~~~v~afGD~~-NDi~ 218 (272)
T PRK15126 193 LAVLSQHLGLSLADCMAFGDAM-NDRE 218 (272)
T ss_pred HHHHHHHhCCCHHHeEEecCCH-HHHH
Confidence 4578999999999999999973 4554
No 147
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=52.52 E-value=13 Score=39.73 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=30.2
Q ss_pred ccccCCccEEEEecccceeecCccc-h-HHHHHHHHHHHHHhcCCCCCCC
Q 007924 148 TLNLRSISAIGYDMDYTLMHYNVMA-W-EGRAYDYCMVNLRNMGFPVEGL 195 (585)
Q Consensus 148 ~L~L~~I~~iGFDmDYTLa~Y~~~~-~-e~L~y~~~~~~Lv~~gYP~~~L 195 (585)
++-.+-.++|.||||+||..=..+- . ..-+.+ +++.|.+.|++..+.
T Consensus 120 ~~~~~~~kvIvFDLDgTLi~~~~~v~irdPgV~E-aL~~LkekGikLaIa 168 (301)
T TIGR01684 120 SKVFEPPHVVVFDLDSTLITDEEPVRIRDPRIYD-SLTELKKRGCILVLW 168 (301)
T ss_pred ccccccceEEEEecCCCCcCCCCccccCCHHHHH-HHHHHHHCCCEEEEE
Confidence 3445677899999999999765320 1 122333 456778888885444
No 148
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=52.45 E-value=16 Score=37.57 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=22.7
Q ss_pred CccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
=|+++-||||+||+.-. ....+...+.+.++|.|
T Consensus 12 ~~k~viFDlDGTL~Ds~-----~~~~~a~~~~~~~~g~~ 45 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSV-----PDLAAAVDRMLLELGRP 45 (272)
T ss_pred cCCEEEEcCCCccccCH-----HHHHHHHHHHHHHcCCC
Confidence 36699999999998643 23444444445567776
No 149
>PLN02645 phosphoglycolate phosphatase
Probab=51.46 E-value=14 Score=38.73 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=32.8
Q ss_pred ccchhhhHHHHHcCcccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhc
Q 007924 306 AHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQ 360 (585)
Q Consensus 306 vH~~G~lk~~i~~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~ 360 (585)
...+|+|+.. + .+ =|.....|.+|+++||+++++||....-...+.+
T Consensus 33 ~D~DGtl~~~---~---~~--~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~ 79 (311)
T PLN02645 33 FDCDGVIWKG---D---KL--IEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGK 79 (311)
T ss_pred EeCcCCeEeC---C---cc--CcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence 3467888642 1 12 2667899999999999999999977444444443
No 150
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=51.04 E-value=8.4 Score=37.42 Aligned_cols=19 Identities=42% Similarity=0.585 Sum_probs=16.0
Q ss_pred cCCccEEEEecccceeecC
Q 007924 151 LRSISAIGYDMDYTLMHYN 169 (585)
Q Consensus 151 L~~I~~iGFDmDYTLa~Y~ 169 (585)
++.++++-||||+||+...
T Consensus 11 ~~~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAE 29 (219)
T ss_pred hccCCEEEEeCcccCCCch
Confidence 4567899999999999863
No 151
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=50.62 E-value=14 Score=38.08 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=25.1
Q ss_pred CccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCCC
Q 007924 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (585)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (585)
.|+++-||||+||..-+ ..+.. +.+. +++|.+.|.|.
T Consensus 1 ~~~~~~~D~DGtl~~~~-~~~~g-a~e~-l~~L~~~g~~~ 37 (279)
T TIGR01452 1 RAQGFIFDCDGVLWLGE-RVVPG-APEL-LDRLARAGKAA 37 (279)
T ss_pred CccEEEEeCCCceEcCC-eeCcC-HHHH-HHHHHHCCCeE
Confidence 37899999999997644 33444 3333 56677777774
No 152
>PLN02887 hydrolase family protein
Probab=49.74 E-value=44 Score=38.79 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=25.5
Q ss_pred CccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
+|+.|.||||+||..-+. ....-.. .++++|.+.|..
T Consensus 307 ~iKLIa~DLDGTLLn~d~-~Is~~t~-eAI~kl~ekGi~ 343 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKS-QISETNA-KALKEALSRGVK 343 (580)
T ss_pred CccEEEEeCCCCCCCCCC-ccCHHHH-HHHHHHHHCCCe
Confidence 799999999999997542 2322222 345667778887
No 153
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=49.37 E-value=16 Score=34.92 Aligned_cols=14 Identities=21% Similarity=0.225 Sum_probs=11.8
Q ss_pred EEEEecccceeecC
Q 007924 156 AIGYDMDYTLMHYN 169 (585)
Q Consensus 156 ~iGFDmDYTLa~Y~ 169 (585)
+|-||||+||+...
T Consensus 1 iVisDIDGTL~~sd 14 (157)
T smart00775 1 IVISDIDGTITKSD 14 (157)
T ss_pred CEEEecCCCCcccc
Confidence 36799999999775
No 154
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=49.32 E-value=17 Score=35.43 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchhhcc
Q 007924 423 AQMIENSLNIHGDEILYVGDHIYTDVSQSK 452 (585)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDIl~sK 452 (585)
...+++.+|+...+|++|||..- |+--.+
T Consensus 184 l~~l~~~lgi~~~~vi~~GD~~N-Di~ml~ 212 (221)
T TIGR02463 184 ANWLKATYNQPDVKTLGLGDGPN-DLPLLE 212 (221)
T ss_pred HHHHHHHhCCCCCcEEEECCCHH-HHHHHH
Confidence 56788889999999999999865 665433
No 155
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=48.69 E-value=18 Score=33.88 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=20.1
Q ss_pred EEEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 156 AIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 156 ~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
++-||+|+||+.... ..+....+.+.++|+|
T Consensus 1 ~iiFD~DGTL~ds~~-----~~~~~~~~~~~~~g~~ 31 (185)
T TIGR01990 1 AVIFDLDGVITDTAE-----YHYLAWKALADELGIP 31 (185)
T ss_pred CeEEcCCCccccChH-----HHHHHHHHHHHHcCCC
Confidence 467999999997653 3444444444557776
No 156
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=47.85 E-value=12 Score=36.28 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=0.0
Q ss_pred EEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 157 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
+.||||+||. ++..--.-....++++|.+.|++
T Consensus 1 i~~DlDGTLl--~~~~~i~~~~~~al~~l~~~Gi~ 33 (225)
T TIGR01482 1 IASDIDGTLT--DPNRAINESALEAIRKAESVGIP 33 (225)
T ss_pred CeEeccCccC--CCCcccCHHHHHHHHHHHHCCCE
No 157
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.40 E-value=1.2e+02 Score=34.66 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=40.4
Q ss_pred eehHhhHHHHHHHH-hchhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCchhhhcccCChHHHHHHHHHHHHHHHH
Q 007924 461 LICRELEEEYNALI-NSRGQRARLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTESMQKLLVVMQR 539 (585)
Q Consensus 461 aIVpELe~Ei~i~~-~~~~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 539 (585)
+=+.|++.|+..+. +++.++++-.+|++.+..+....++ +++. ...++++++++|..+.++
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~---av~~---------------~~~~~~~~~~ql~~~~~~ 127 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ---AVQS---------------ETQELTKEIEQLKSERQQ 127 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHh---------------hhHHHHHHHHHHHHHHHH
Confidence 33567777776543 3455566666665444434333222 2221 113455555666666666
Q ss_pred HHHhhhhhhhhhccccc
Q 007924 540 LDQKIAPMLESDGELFN 556 (585)
Q Consensus 540 ~d~~~~~~~~~~~~~Fn 556 (585)
+...+..+.+++....+
T Consensus 128 ~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 128 LQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 66666666555544443
No 158
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=45.11 E-value=20 Score=38.46 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=30.0
Q ss_pred cccCCccEEEEecccceeecCccc-h-HHHHHHHHHHHHHhcCCCCCCCC
Q 007924 149 LNLRSISAIGYDMDYTLMHYNVMA-W-EGRAYDYCMVNLRNMGFPVEGLA 196 (585)
Q Consensus 149 L~L~~I~~iGFDmDYTLa~Y~~~~-~-e~L~y~~~~~~Lv~~gYP~~~L~ 196 (585)
+-.+-.++++||||+||..=..+- . ..-+++ +++.|.+.|++..+..
T Consensus 123 ~~~~~~~~i~~D~D~TL~~~~~~v~irdp~V~E-tL~eLkekGikLaIvT 171 (303)
T PHA03398 123 LVWEIPHVIVFDLDSTLITDEEPVRIRDPFVYD-SLDELKERGCVLVLWS 171 (303)
T ss_pred eEeeeccEEEEecCCCccCCCCccccCChhHHH-HHHHHHHCCCEEEEEc
Confidence 334456899999999999765321 0 133455 4567778888854443
No 159
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=44.93 E-value=19 Score=34.77 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.3
Q ss_pred cCCccEEEEecccceeecCccch
Q 007924 151 LRSISAIGYDMDYTLMHYNVMAW 173 (585)
Q Consensus 151 L~~I~~iGFDmDYTLa~Y~~~~~ 173 (585)
|..|+++.||+|+||........
T Consensus 1 ~~~~k~i~FD~d~TL~d~~~~~~ 23 (229)
T COG1011 1 MMMIKAILFDLDGTLLDFDSAEF 23 (229)
T ss_pred CCceeEEEEecCCcccccchHHh
Confidence 46799999999999999876543
No 160
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=43.79 E-value=24 Score=32.18 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=12.4
Q ss_pred cEEEEecccceeec
Q 007924 155 SAIGYDMDYTLMHY 168 (585)
Q Consensus 155 ~~iGFDmDYTLa~Y 168 (585)
+++-||+||||...
T Consensus 1 kli~~DlD~Tl~~~ 14 (128)
T TIGR01681 1 KVIVFDLDNTLWTG 14 (128)
T ss_pred CEEEEeCCCCCCCC
Confidence 47889999999987
No 161
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=42.16 E-value=37 Score=30.56 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=22.1
Q ss_pred EEEEcCCChHhhHhhhcccccccCCCC
Q 007924 344 LLLITNSDYHYTDKMMQHSFNRFLPND 370 (585)
Q Consensus 344 lFLiTNS~~~Ytn~vM~Yl~~~~l~~g 370 (585)
+|-+|||+|...+.+.+|+--..+|.|
T Consensus 2 f~YvS~SPwnly~~l~~Fl~~~~~P~G 28 (100)
T PF09949_consen 2 FFYVSNSPWNLYPFLRDFLRRNGFPAG 28 (100)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCC
Confidence 688999999999999999964445555
No 162
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=42.00 E-value=13 Score=37.65 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=74.3
Q ss_pred HHHHHHHHH----HHhccchhhhHHHHHcCccccccc---------------CCCchHHHHHHhHcCceEEEEcCCChHh
Q 007924 294 GLYKAVGKA----LFRAHVEGQLKSEIMSKPELFVEP---------------DPELPLALLDQKEAGKKLLLITNSDYHY 354 (585)
Q Consensus 294 ~l~~DV~~A----vd~vH~~G~lk~~i~~npekYI~k---------------dp~l~~~L~~lr~~GKKlFLiTNS~~~Y 354 (585)
.+.+++|+. ...|| | ..+||++||.. .+.+..+|..+|+.|+|.-|.-|-.-..
T Consensus 47 ~~i~~i~~~~~~~~~dvH----L---Mv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~ 119 (220)
T PRK08883 47 PICKALRDYGITAPIDVH----L---MVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPL 119 (220)
T ss_pred HHHHHHHHhCCCCCEEEE----e---ccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 355666653 24567 2 35677777633 3456788899999999999888876544
Q ss_pred hHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCcccccccc--CC---CccccCCCHH--HHH
Q 007924 355 TDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKA--RT---GGLYSGGSAQ--MIE 427 (585)
Q Consensus 355 tn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l~~~~~l--~~---G~VYsgGn~~--~l~ 427 (585)
... .++-++-|.|.+-+--|+|-.. .|.....+ +++...++ ++ -.|...|... .+.
T Consensus 120 ~~i-------------~~~l~~~D~vlvMtV~PGfgGq--~fi~~~le--kI~~l~~~~~~~~~~~~I~vdGGI~~eni~ 182 (220)
T PRK08883 120 HHL-------------EYIMDKVDLILLMSVNPGFGGQ--SFIPHTLD--KLRAVRKMIDESGRDIRLEIDGGVKVDNIR 182 (220)
T ss_pred HHH-------------HHHHHhCCeEEEEEecCCCCCc--eecHhHHH--HHHHHHHHHHhcCCCeeEEEECCCCHHHHH
Confidence 322 1244578999999999999643 33221111 11111111 11 2244555443 333
Q ss_pred HHhCCCCCcEEEEcCcccc
Q 007924 428 NSLNIHGDEILYVGDHIYT 446 (585)
Q Consensus 428 ~llg~~G~~VLYfGDHIyg 446 (585)
++. ..|.+++-+|=-||+
T Consensus 183 ~l~-~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 183 EIA-EAGADMFVAGSAIFG 200 (220)
T ss_pred HHH-HcCCCEEEEeHHHhC
Confidence 333 457788888865553
No 163
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=41.85 E-value=14 Score=35.40 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.7
Q ss_pred ccEEEEecccceeecCc
Q 007924 154 ISAIGYDMDYTLMHYNV 170 (585)
Q Consensus 154 I~~iGFDmDYTLa~Y~~ 170 (585)
|++|-||||+||+-+.+
T Consensus 1 ik~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHS 17 (198)
T ss_pred CcEEEEeCCCcCccHHH
Confidence 57899999999998763
No 164
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=39.81 E-value=29 Score=33.03 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=22.7
Q ss_pred cEEEEecccceeecC--ccchHHH-HHHH---HHHHHHhcCCCCC
Q 007924 155 SAIGYDMDYTLMHYN--VMAWEGR-AYDY---CMVNLRNMGFPVE 193 (585)
Q Consensus 155 ~~iGFDmDYTLa~Y~--~~~~e~L-~y~~---~~~~Lv~~gYP~~ 193 (585)
+++-||.|+||+..+ ....+.+ .|.. +++.|.+.||+.-
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~ 46 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALV 46 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEE
Confidence 688999999999321 1122333 2333 3445667788843
No 165
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=39.80 E-value=24 Score=36.07 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.5
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChH
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYH 353 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~ 353 (585)
-|.....+.+|+++|++++++||.+..
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 467788999999999999999996665
No 166
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=39.03 E-value=16 Score=34.56 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=14.5
Q ss_pred ccEEEEecccceeecC
Q 007924 154 ISAIGYDMDYTLMHYN 169 (585)
Q Consensus 154 I~~iGFDmDYTLa~Y~ 169 (585)
|+.+-||+|+||+.-.
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 7889999999999865
No 167
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=38.22 E-value=62 Score=32.47 Aligned_cols=51 Identities=24% Similarity=0.214 Sum_probs=37.7
Q ss_pred CCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCC
Q 007924 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQ 391 (585)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~ 391 (585)
+.+..++..+|++|+|.-|.=|-....-. + ..|-++.|.|.+-+-.|+|=.
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~~-----~--------~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVEE-----L--------EPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GGG-----G--------TTTGCCSSEEEEESS-TTTSS
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCchH-----H--------HHHhhhcCEEEEEEecCCCCc
Confidence 45677899999999999988777654421 1 357788999999999999754
No 168
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=38.16 E-value=16 Score=35.32 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=16.1
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChH
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYH 353 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~ 353 (585)
-|.....|.+|.+.|-.+++||.++..
T Consensus 75 ~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 75 IPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp -TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred cHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 355666777777777556666666655
No 169
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=37.74 E-value=56 Score=38.80 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=31.3
Q ss_pred cCccccCCccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCCC
Q 007924 146 SRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (585)
Q Consensus 146 Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (585)
.+..+....++|-+|||+||..-+....+. . -.+++.|.+.|.|.
T Consensus 408 ~~~~~~~~~KLIfsDLDGTLLd~d~~i~~~-t-~eAL~~L~ekGI~~ 452 (694)
T PRK14502 408 RLPSSGQFKKIVYTDLDGTLLNPLTYSYST-A-LDALRLLKDKELPL 452 (694)
T ss_pred cCCCcCceeeEEEEECcCCCcCCCCccCHH-H-HHHHHHHHHcCCeE
Confidence 356677788999999999999854432332 2 23466777889883
No 170
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=36.72 E-value=91 Score=32.27 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=39.8
Q ss_pred cCcccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhccccc
Q 007924 318 SKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFN 364 (585)
Q Consensus 318 ~npekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~ 364 (585)
....++..-+++++.++..|.+.|..++-+|...-.+.+..+++|-.
T Consensus 74 ~~~~~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~ 120 (252)
T PF11019_consen 74 FELRKMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKS 120 (252)
T ss_pred HhhcceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHH
Confidence 34445555678899999999999999999999999999999998863
No 171
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=35.17 E-value=36 Score=34.72 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=73.7
Q ss_pred HHHHHHHH----HHhccchhhhHHHHHcCccccccc---------------CCCchHHHHHHhHcCceEEEEcCCChHhh
Q 007924 295 LYKAVGKA----LFRAHVEGQLKSEIMSKPELFVEP---------------DPELPLALLDQKEAGKKLLLITNSDYHYT 355 (585)
Q Consensus 295 l~~DV~~A----vd~vH~~G~lk~~i~~npekYI~k---------------dp~l~~~L~~lr~~GKKlFLiTNS~~~Yt 355 (585)
+.+++++. ...|| | ..+||++||.. .+.+..+|..+|+.|.|.-|.-|-.-.-.
T Consensus 52 ~i~~lr~~~~~~~~dvH----L---Mv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~ 124 (223)
T PRK08745 52 VCQALRKHGITAPIDVH----L---MVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVD 124 (223)
T ss_pred HHHHHHhhCCCCCEEEE----e---ccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHH
Confidence 55666654 14567 2 35677777633 34567889999999999999888653322
Q ss_pred HhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCcccccccc--C---CCccccCCCHH-HHHHH
Q 007924 356 DKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKA--R---TGGLYSGGSAQ-MIENS 429 (585)
Q Consensus 356 n~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l~~~~~l--~---~G~VYsgGn~~-~l~~l 429 (585)
.+-.| .++.|.|.+-+--|+|-... |.+-.. .+++...++ + .-.|..-|... +-.+.
T Consensus 125 -~i~~~------------l~~vD~VlvMtV~PGf~GQ~--fi~~~l--~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~ 187 (223)
T PRK08745 125 -ILDWV------------LPELDLVLVMSVNPGFGGQA--FIPSAL--DKLRAIRKKIDALGKPIRLEIDGGVKADNIGA 187 (223)
T ss_pred -HHHHH------------HhhcCEEEEEEECCCCCCcc--ccHHHH--HHHHHHHHHHHhcCCCeeEEEECCCCHHHHHH
Confidence 12222 24789999999999998643 211000 011110011 1 12355555443 23334
Q ss_pred hCCCCCcEEEEcCcccc
Q 007924 430 LNIHGDEILYVGDHIYT 446 (585)
Q Consensus 430 lg~~G~~VLYfGDHIyg 446 (585)
+-..|.+++-+|=-||+
T Consensus 188 l~~aGaDi~V~GSaiF~ 204 (223)
T PRK08745 188 IAAAGADTFVAGSAIFN 204 (223)
T ss_pred HHHcCCCEEEEChhhhC
Confidence 44457799999966664
No 172
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.78 E-value=72 Score=31.26 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=19.3
Q ss_pred CCCeeEecCcc------------cc---CCccEEEEeccc
Q 007924 139 SPRGIFCSRTL------------NL---RSISAIGYDMDY 163 (585)
Q Consensus 139 ~~~~IF~Nr~L------------~L---~~I~~iGFDmDY 163 (585)
.+..|||++.- .+ ++|.++|||-+.
T Consensus 172 ~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~~ 211 (263)
T cd06280 172 RPEALVASNGLLLLGALRAVRAAGLRIPQDLALAGFDNDP 211 (263)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCCCCcEEEEEeCChh
Confidence 47889999763 22 689999999875
No 173
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=34.53 E-value=20 Score=35.14 Aligned_cols=11 Identities=45% Similarity=0.918 Sum_probs=0.0
Q ss_pred cEEEEecccce
Q 007924 155 SAIGYDMDYTL 165 (585)
Q Consensus 155 ~~iGFDmDYTL 165 (585)
+.|-||+||||
T Consensus 4 klvvFDLD~Tl 14 (169)
T PF12689_consen 4 KLVVFDLDYTL 14 (169)
T ss_dssp SEEEE-STTTS
T ss_pred cEEEEcCcCCC
No 174
>PRK06769 hypothetical protein; Validated
Probab=34.38 E-value=30 Score=33.16 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=27.8
Q ss_pred cCCccEEEEecccceeecCccch-HHH-HHHHHH---HHHHhcCCCCCCC
Q 007924 151 LRSISAIGYDMDYTLMHYNVMAW-EGR-AYDYCM---VNLRNMGFPVEGL 195 (585)
Q Consensus 151 L~~I~~iGFDmDYTLa~Y~~~~~-e~L-~y~~~~---~~Lv~~gYP~~~L 195 (585)
|..|+++=||.|+||..+..-.+ ..+ .|..+. +.|.+.||+.-.+
T Consensus 1 ~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~ 50 (173)
T PRK06769 1 MTNIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSF 50 (173)
T ss_pred CCCCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEE
Confidence 56899999999999976632111 111 244444 4566678885443
No 175
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=34.21 E-value=42 Score=36.57 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=41.0
Q ss_pred CCchHHHHHHhHcC-ceEEEEcCCChHhhHhhhcccccccCCCC----CCCCCCccEEEE
Q 007924 328 PELPLALLDQKEAG-KKLLLITNSDYHYTDKMMQHSFNRFLPND----MGWRDLFNMVIV 382 (585)
Q Consensus 328 p~l~~~L~~lr~~G-KKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g----~dWrdyFDvVIv 382 (585)
|.+..|++.|-+.| .-+|-++||+|.+-...=.|+....+|.| .+|-..||.+++
T Consensus 199 pGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~ 258 (373)
T COG4850 199 PGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIE 258 (373)
T ss_pred CCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCccccccc
Confidence 55677777776666 77999999999999999999987667766 255444555444
No 176
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=34.20 E-value=21 Score=33.76 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.2
Q ss_pred ccEEEEecccceeecCcc
Q 007924 154 ISAIGYDMDYTLMHYNVM 171 (585)
Q Consensus 154 I~~iGFDmDYTLa~Y~~~ 171 (585)
|+++-||+|+||..-+..
T Consensus 1 i~~i~fDktGTLt~~~~~ 18 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMS 18 (215)
T ss_dssp ESEEEEECCTTTBESHHE
T ss_pred CeEEEEecCCCcccCeEE
Confidence 689999999999877644
No 177
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=33.99 E-value=15 Score=34.03 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.5
Q ss_pred EEEEecccceeecCcc
Q 007924 156 AIGYDMDYTLMHYNVM 171 (585)
Q Consensus 156 ~iGFDmDYTLa~Y~~~ 171 (585)
++-||||+||+...+.
T Consensus 1 ~vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 1 AILFDLDGVLVDTSSA 16 (183)
T ss_pred CeeeccCCceechHHH
Confidence 4679999999999764
No 178
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=33.94 E-value=42 Score=36.03 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=25.6
Q ss_pred ccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCCC
Q 007924 154 ISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (585)
Q Consensus 154 I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (585)
.+.|-+|||+||..-+...++. +. -++++|.+.|.|.
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~-a~-~aL~~Lk~~GI~v 37 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGA-AR-QALAALERRSIPL 37 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHH-HH-HHHHHHHHCCCEE
Confidence 3678899999999854433433 33 3467788889883
No 179
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=33.80 E-value=41 Score=34.19 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.1
Q ss_pred CCchHHHHHHhHcCceEEEEcC
Q 007924 328 PELPLALLDQKEAGKKLLLITN 349 (585)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTN 349 (585)
|.....|.+|+++|++++++||
T Consensus 20 ~~a~~~l~~l~~~g~~~~~~Tn 41 (249)
T TIGR01457 20 PEAETFVHELQKRDIPYLFVTN 41 (249)
T ss_pred cCHHHHHHHHHHCCCeEEEEeC
Confidence 4678899999999999999998
No 180
>PLN02423 phosphomannomutase
Probab=33.77 E-value=43 Score=34.05 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=15.0
Q ss_pred CCCcEEEEcCc---cccchhhcc
Q 007924 433 HGDEILYVGDH---IYTDVSQSK 452 (585)
Q Consensus 433 ~G~~VLYfGDH---IygDIl~sK 452 (585)
...+|+.|||. =+-|+-=.+
T Consensus 199 ~~~e~~aFGD~~~~~~ND~eMl~ 221 (245)
T PLN02423 199 DFDEIHFFGDKTYEGGNDHEIFE 221 (245)
T ss_pred CcCeEEEEeccCCCCCCcHHHHh
Confidence 67899999998 666665433
No 181
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=33.43 E-value=84 Score=32.48 Aligned_cols=68 Identities=25% Similarity=0.285 Sum_probs=35.7
Q ss_pred CCCeeEecCc------------ccc---CCccEEEEecccceeecCccch-------HHHHHH---HHHHHHHhcCCCCC
Q 007924 139 SPRGIFCSRT------------LNL---RSISAIGYDMDYTLMHYNVMAW-------EGRAYD---YCMVNLRNMGFPVE 193 (585)
Q Consensus 139 ~~~~IF~Nr~------------L~L---~~I~~iGFDmDYTLa~Y~~~~~-------e~L~y~---~~~~~Lv~~gYP~~ 193 (585)
.+..|||.+. ..+ ++|.++||| |.-++.|..|.+ ++|+.. ++.+++.....|..
T Consensus 237 ~~~ai~~~nD~~A~g~~~al~~~G~~vP~disVigfD-~~~~~~~~~p~lttv~~~~~~~g~~A~~~l~~~i~g~~~~~~ 315 (343)
T PRK10727 237 NFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFD-DVLVSRYVRPRLTTVRYPIVTMATQAAELALALADNRPLPEI 315 (343)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEeec-CcHHHHhcCCCCeeeeCCHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 4678999754 233 589999998 444555543322 344443 33333322223322
Q ss_pred CCCCCccccccceE
Q 007924 194 GLAFDPDLVIRGLV 207 (585)
Q Consensus 194 ~L~yDp~F~iRGLv 207 (585)
...+.|.+..|+-+
T Consensus 316 ~~~i~~~Li~R~S~ 329 (343)
T PRK10727 316 TNVFSPTLVRRHSV 329 (343)
T ss_pred cEEeCcEEEEecCC
Confidence 22345666666543
No 182
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=33.19 E-value=31 Score=32.24 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=31.6
Q ss_pred CCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
|+...++..++++|.++++||.|+-.++..++.++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~ 126 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL 126 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 67779999999999999999999999999998744
No 183
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=32.86 E-value=36 Score=32.44 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSF 363 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~ 363 (585)
.|....++.+++++|.+++++|.++|.-.+....|+-
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 3677889999999999999999999999887777763
No 184
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=32.43 E-value=22 Score=35.83 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCCcEEEEcCccccchhhcccc----CCc--eEEeeh
Q 007924 424 QMIENSLNIHGDEILYVGDHIYTDVSQSKVH----LRW--RTALIC 463 (585)
Q Consensus 424 ~~l~~llg~~G~~VLYfGDHIygDIl~sKk~----~gW--RT~aIV 463 (585)
..+.+.++.....++||||. ..|+---+.. .+| .++.|.
T Consensus 173 ~~~~~~~~~~~~~~i~iGD~-~~D~~~~~~~~~~~~~~g~~~v~v~ 217 (244)
T TIGR00685 173 KRLLWHQPGSGISPVYLGDD-ITDEDAFRVVNNQWGNYGFYPVPIG 217 (244)
T ss_pred HHHHHhcccCCCceEEEcCC-CcHHHHHHHHhcccCCCCeEEEEEe
Confidence 45666677777899999995 4577655544 233 466665
No 185
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=31.75 E-value=23 Score=36.33 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=12.0
Q ss_pred EEEEecccceeecC
Q 007924 156 AIGYDMDYTLMHYN 169 (585)
Q Consensus 156 ~iGFDmDYTLa~Y~ 169 (585)
+|+||+|+||+-=.
T Consensus 65 aViFDlDgTLlDSs 78 (237)
T TIGR01672 65 AVSFDIDDTVLFSS 78 (237)
T ss_pred EEEEeCCCccccCc
Confidence 89999999998543
No 186
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=31.64 E-value=55 Score=39.63 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCccc
Q 007924 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMR 407 (585)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l~ 407 (585)
|+.+..+.+++++|.++.++|+-+-.-+..+.+-+ | ..+.++.+|++.. +...+. ..+.
T Consensus 531 ~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~-G--------i~~~~~~~v~g~~----------l~~~~~--~~l~ 589 (884)
T TIGR01522 531 PGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL-G--------MPSKTSQSVSGEK----------LDAMDD--QQLS 589 (884)
T ss_pred hHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-C--------CCCCCCceeEhHH----------hHhCCH--HHHH
Confidence 67889999999999999999999999999988765 2 1222333443321 111110 0111
Q ss_pred cccccCCCccccCCCHHH---HHHHhCCCCCcEEEEcCccc
Q 007924 408 PCFKARTGGLYSGGSAQM---IENSLNIHGDEILYVGDHIY 445 (585)
Q Consensus 408 ~~~~l~~G~VYsgGn~~~---l~~llg~~G~~VLYfGDHIy 445 (585)
. .+.+..||+.=+..+ +-+.++..|..|+++||-+.
T Consensus 590 ~--~~~~~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGvN 628 (884)
T TIGR01522 590 Q--IVPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVN 628 (884)
T ss_pred H--HhhcCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 1 234566887777765 45556677899999999764
No 187
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=31.05 E-value=1.3e+02 Score=29.46 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=17.5
Q ss_pred CCCeeEecCc-c-----------cc---CCccEEEEecc
Q 007924 139 SPRGIFCSRT-L-----------NL---RSISAIGYDMD 162 (585)
Q Consensus 139 ~~~~IF~Nr~-L-----------~L---~~I~~iGFDmD 162 (585)
.+..|||+.. + .+ ++|.++|||-+
T Consensus 177 ~~~ai~~~~d~~a~g~~~~l~~~g~~ip~di~v~g~d~~ 215 (268)
T cd06270 177 PFTAVFCANDEMAAGAISALREHGISVPQDVSIIGFDDV 215 (268)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCCCCCCceeEEEecCc
Confidence 4678999864 1 22 58999999964
No 188
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=30.79 E-value=43 Score=31.88 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=13.3
Q ss_pred CccEEEEecccceeecCc
Q 007924 153 SISAIGYDMDYTLMHYNV 170 (585)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~ 170 (585)
-++++-||+|+|| ..+.
T Consensus 2 ~~~~~~~d~~~t~-~~~~ 18 (181)
T PRK08942 2 SMKAIFLDRDGVI-NVDS 18 (181)
T ss_pred CccEEEEECCCCc-ccCC
Confidence 4689999999998 4444
No 189
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=30.37 E-value=45 Score=33.34 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=0.0
Q ss_pred EEEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 156 AIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 156 ~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
.+-||||+||..-+..--+.- -.++++|.+.|+.
T Consensus 1 li~~DlDGTLl~~~~~i~~~~--~~~i~~l~~~G~~ 34 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPST--KEALAKLREKGIK 34 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHH--HHHHHHHHHCCCe
No 190
>PRK10444 UMP phosphatase; Provisional
Probab=30.35 E-value=42 Score=34.39 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=28.6
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
-|.....+.+|++.||+++++||....=.....+.+
T Consensus 19 ~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 19 VPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 577889999999999999999999875444444443
No 191
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=30.22 E-value=65 Score=29.89 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=39.8
Q ss_pred cccccccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEE
Q 007924 320 PELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVI 381 (585)
Q Consensus 320 pekYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVI 381 (585)
...||.+-|.+..+|..+.+. ..+++.|.+.-.|++.+++.+. +. +.+|+-++
T Consensus 31 ~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ld-------p~-~~~~~~~~ 83 (159)
T PF03031_consen 31 GGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALD-------PN-GKLFSRRL 83 (159)
T ss_dssp EEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHT-------TT-TSSEEEEE
T ss_pred cceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhh-------hh-cccccccc
Confidence 356778889999999998554 7899999999999999999885 22 55666555
No 192
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=30.21 E-value=22 Score=33.14 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=11.8
Q ss_pred EEEEecccceeecC
Q 007924 156 AIGYDMDYTLMHYN 169 (585)
Q Consensus 156 ~iGFDmDYTLa~Y~ 169 (585)
++-||||+||+-..
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 46799999999765
No 193
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=30.17 E-value=34 Score=34.18 Aligned_cols=29 Identities=21% Similarity=-0.126 Sum_probs=15.6
Q ss_pred EecccceeecCccchHHHHHHHHHHHHHh
Q 007924 159 YDMDYTLMHYNVMAWEGRAYDYCMVNLRN 187 (585)
Q Consensus 159 FDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~ 187 (585)
||+|+||+-+.+..........+++.|..
T Consensus 2 lDyDGTL~p~~~~p~~~~~~~~~~~~L~~ 30 (235)
T PF02358_consen 2 LDYDGTLAPIVDDPDAAVPPPELRELLRA 30 (235)
T ss_dssp EE-TTTSS---S-GGG----HHHHHHHHH
T ss_pred cccCCccCCCCCCccccCCCHHHHHHHHH
Confidence 79999999999876776677777776653
No 194
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.82 E-value=1.3e+02 Score=29.06 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=18.0
Q ss_pred CCCeeEecCc------------ccc---CCccEEEEecc
Q 007924 139 SPRGIFCSRT------------LNL---RSISAIGYDMD 162 (585)
Q Consensus 139 ~~~~IF~Nr~------------L~L---~~I~~iGFDmD 162 (585)
.+..|||++. ..+ ++|.++|||.+
T Consensus 178 ~~~~i~~~~~~~a~~~~~al~~~g~~~p~di~iig~d~~ 216 (268)
T cd06289 178 RPTAIVCFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDV 216 (268)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 4678998755 233 48999999986
No 195
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.46 E-value=2.4e+02 Score=29.16 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=7.2
Q ss_pred ehHhhHHHHHHH
Q 007924 462 ICRELEEEYNAL 473 (585)
Q Consensus 462 IVpELe~Ei~i~ 473 (585)
.|.|++.|++.|
T Consensus 33 ~L~e~~kE~~~L 44 (230)
T PF10146_consen 33 CLEEYRKEMEEL 44 (230)
T ss_pred HHHHHHHHHHHH
Confidence 456666666655
No 196
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=29.05 E-value=1.3e+02 Score=31.17 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=24.0
Q ss_pred CCCeeEecCc------------ccc---CCccEEEEecccceeecCccch
Q 007924 139 SPRGIFCSRT------------LNL---RSISAIGYDMDYTLMHYNVMAW 173 (585)
Q Consensus 139 ~~~~IF~Nr~------------L~L---~~I~~iGFDmDYTLa~Y~~~~~ 173 (585)
.+..|||.+. ..+ ++|.++||| |..+++|..|.+
T Consensus 237 ~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvigfD-~~~~~~~~~p~l 285 (346)
T PRK10401 237 QLTAVFAYNDNMAAGALTALKDNGIAIPLHLSIIGFD-DIPIARYTDPQL 285 (346)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeC-CchHHhcCCCCC
Confidence 4678999754 333 599999998 666777755544
No 197
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.95 E-value=4.9e+02 Score=24.36 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=44.3
Q ss_pred CCceEEeehHhhHHHHHHHHhc-hhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCchhhhcccCChHHHHHHHHHH
Q 007924 455 LRWRTALICRELEEEYNALINS-RGQRARLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTESMQKL 533 (585)
Q Consensus 455 ~gWRT~aIVpELe~Ei~i~~~~-~~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 533 (585)
.+=-++.+|+-|..+|+-.... ..++.++..|...++.+.+..-.|-..... -.....++..|
T Consensus 10 ~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~----------------~~~~~~~~~~L 73 (120)
T PF12325_consen 10 SGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE----------------LRALKKEVEEL 73 (120)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH
Confidence 3444556677777666654221 234566777766666555544332111000 02333456666
Q ss_pred HHHHHHHHHhhhhhhhhhcc
Q 007924 534 LVVMQRLDQKIAPMLESDGE 553 (585)
Q Consensus 534 ~~~~~~~d~~~~~~~~~~~~ 553 (585)
+...++++.++..+++-+|+
T Consensus 74 ~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 74 EQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 66777777777766665554
No 198
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=28.88 E-value=61 Score=31.03 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=23.0
Q ss_pred cEEEEecccceeecCc-----cchHHH-HHHHH---HHHHHhcCCCCC
Q 007924 155 SAIGYDMDYTLMHYNV-----MAWEGR-AYDYC---MVNLRNMGFPVE 193 (585)
Q Consensus 155 ~~iGFDmDYTLa~Y~~-----~~~e~L-~y~~~---~~~Lv~~gYP~~ 193 (585)
+++.||.|+||..=++ ...+.+ .|..+ +++|.+.||+.-
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~ 49 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFV 49 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEE
Confidence 5789999999988222 212222 23333 345566788743
No 199
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=28.59 E-value=1.1e+02 Score=34.97 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=74.1
Q ss_pred Cccccc-ccCCCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcE
Q 007924 319 KPELFV-EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLY 397 (585)
Q Consensus 319 npekYI-~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~ 397 (585)
+.||=| .++.+...+.+...+.||+|.||+. -.+-..++.=++. +.-|.|. +.|++
T Consensus 92 ~tEKevLypn~~~~eL~e~ai~n~krVIlISD--MYlps~Il~~~L~-------------------s~g~d~~--nipiY 148 (635)
T COG5610 92 NTEKEVLYPNKKNIELVEEAIKNEKRVILISD--MYLPSSILRTFLN-------------------SFGPDFN--NIPIY 148 (635)
T ss_pred ccceeEeeccccchHHHHHHHhCCCeEEEEec--ccCcHHHHHHHHH-------------------hcCCCcc--Cceee
Confidence 556654 4677777888899999999999954 4444455544432 1112222 23444
Q ss_pred EeecCCCccccccccCCCccccCCCH-HHHHHHhCCCCCcEEEEcCccccchhhccccCCceEEeehHhhHHHHH
Q 007924 398 EVVTGEGLMRPCFKARTGGLYSGGSA-QMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYN 471 (585)
Q Consensus 398 ~vd~~~g~l~~~~~l~~G~VYsgGn~-~~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe~Ei~ 471 (585)
-- |..+ +.+ ..||+ +.+.++=++..++.+-+||+..+|++.||+ .|--|..-+-||-+=++
T Consensus 149 ~S----~e~r----l~K----nSg~LFk~Vlk~EnVd~~~w~H~GDN~~aD~l~pk~-LgI~Tlf~~s~l~~~ee 210 (635)
T COG5610 149 MS----SEFR----LKK----NSGNLFKAVLKLENVDPKKWIHCGDNWVADYLKPKN-LGISTLFYISQLLPYEE 210 (635)
T ss_pred ec----ceee----hhc----ccchHHHHHHhhcCCChhheEEecCchhhhhcCccc-cchhHHHHHHHhhhHhh
Confidence 21 1111 111 13444 346777788889999999999999999996 58777766777765333
No 200
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=28.42 E-value=54 Score=32.99 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=25.4
Q ss_pred HHHHHHHhCCC--CCcEEEEcCccccchhhccccCCce
Q 007924 423 AQMIENSLNIH--GDEILYVGDHIYTDVSQSKVHLRWR 458 (585)
Q Consensus 423 ~~~l~~llg~~--G~~VLYfGDHIygDIl~sKk~~gWR 458 (585)
...+.+.+|+. ..++++|||..= |+--.+. .|+-
T Consensus 181 i~~l~~~~~i~~~~~~~~a~GD~~N-D~~Ml~~-ag~~ 216 (256)
T TIGR01486 181 ANALKQFYNQPGGAIKVVGLGDSPN-DLPLLEV-VDLA 216 (256)
T ss_pred HHHHHHHHhhcCCCceEEEEcCCHh-hHHHHHH-CCEE
Confidence 56788888988 889999999965 8766553 3443
No 201
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.23 E-value=1.2e+02 Score=29.61 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=17.6
Q ss_pred CCCeeEecCc------------ccc---CCccEEEEecc
Q 007924 139 SPRGIFCSRT------------LNL---RSISAIGYDMD 162 (585)
Q Consensus 139 ~~~~IF~Nr~------------L~L---~~I~~iGFDmD 162 (585)
.+..|||++. ..+ ++|.++|||..
T Consensus 178 ~~~ai~~~~d~~a~~~~~~l~~~g~~~p~~i~v~~~d~~ 216 (270)
T cd06296 178 RPTAIFAGNDLMALGVYEAARERGLRIPEDLSVVGFDDL 216 (270)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEEECCh
Confidence 4678999764 222 58999999965
No 202
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=28.18 E-value=2.9e+02 Score=30.14 Aligned_cols=56 Identities=27% Similarity=0.287 Sum_probs=32.9
Q ss_pred hHhhHHHHHH---HHh-chhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCchhhhcccCCh
Q 007924 463 CRELEEEYNA---LIN-SRGQRARLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDD 523 (585)
Q Consensus 463 VpELe~Ei~i---~~~-~~~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 523 (585)
|.|||.-|-+ -+| -++|+.++.+|...+..|+....+.+... .+-+..++.+|.|+
T Consensus 44 i~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~a-----NRVA~vvANEWKD~ 103 (351)
T PF07058_consen 44 IRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSA-----NRVATVVANEWKDE 103 (351)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhhhhhhccccccc
Confidence 5666654421 112 27899999999877777777665544322 22344556666664
No 203
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=27.79 E-value=49 Score=32.70 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCCHHHHHHHhC----CCCCcEEEEcCccccchhhccccCCceEEeehHh
Q 007924 420 GGSAQMIENSLN----IHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 465 (585)
Q Consensus 420 gGn~~~l~~llg----~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpE 465 (585)
+|....++.+.| ...++|+.|||-+|.||+-.... |--++.+-|=
T Consensus 121 ~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~m-Gs~gVw~~~g 169 (190)
T KOG2961|consen 121 ACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRM-GSLGVWTEPG 169 (190)
T ss_pred CccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhc-cceeEEeccc
Confidence 556667777777 45789999999999999988754 5445555443
No 204
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=27.62 E-value=50 Score=32.92 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=28.7
Q ss_pred chhhhHHHHHcCccccccc------CCCchHHHHHHhHcCceEEEEcC
Q 007924 308 VEGQLKSEIMSKPELFVEP------DPELPLALLDQKEAGKKLLLITN 349 (585)
Q Consensus 308 ~~G~lk~~i~~npekYI~k------dp~l~~~L~~lr~~GKKlFLiTN 349 (585)
++|++ ..++.-||.+ .|...+.|.+|++.|-++.++||
T Consensus 12 RDGti----n~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 12 RDGTI----NIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred CCCce----ecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEEC
Confidence 56665 2233327655 57888999999999999999999
No 205
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.05 E-value=4.7e+02 Score=27.04 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=8.4
Q ss_pred hHHHHHHHHHhHHHHHHH
Q 007924 478 GQRARLVELINQKEVVGD 495 (585)
Q Consensus 478 ~~~~~l~~L~~~~~~l~~ 495 (585)
+++++...|+..+....+
T Consensus 36 e~~kE~~~L~~Er~~h~e 53 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVE 53 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555544444333
No 206
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=26.79 E-value=53 Score=31.44 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=0.0
Q ss_pred EEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 157 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
|-||+|+||+..+.. ..+-.-+.+.+ |.+.|++
T Consensus 1 i~~DlDGTLl~~~~~-i~~~~~~al~~-l~~~g~~ 33 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-ISPETIEALKE-LQEKGIK 33 (254)
T ss_dssp EEEECCTTTCSTTSS-SCHHHHHHHHH-HHHTTCE
T ss_pred cEEEECCceecCCCe-eCHHHHHHHHh-hcccceE
No 207
>PRK10671 copA copper exporting ATPase; Provisional
Probab=26.62 E-value=1.2e+02 Score=36.58 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=28.5
Q ss_pred CchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 329 ELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 329 ~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
.....+.+|++.|.++.++|+.+-..+..+.+.+
T Consensus 654 ~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~l 687 (834)
T PRK10671 654 DSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEA 687 (834)
T ss_pred hHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 4556788899999999999999999888888865
No 208
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=26.51 E-value=41 Score=38.64 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=26.2
Q ss_pred CCccEEEEecccceeecCcc-----chHH--HHHHHHHHH---HHhcCCCC
Q 007924 152 RSISAIGYDMDYTLMHYNVM-----AWEG--RAYDYCMVN---LRNMGFPV 192 (585)
Q Consensus 152 ~~I~~iGFDmDYTLa~Y~~~-----~~e~--L~y~~~~~~---Lv~~gYP~ 192 (585)
...+++.||+|+||+.-++. .-+. +.|..+.+. |.+.||+.
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~I 216 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKI 216 (526)
T ss_pred ccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEE
Confidence 56799999999999975431 1122 235555554 44578874
No 209
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=26.38 E-value=25 Score=33.88 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=17.5
Q ss_pred EEEecccceeecCccchHHHHHHHHHHHHHh-cCCC
Q 007924 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRN-MGFP 191 (585)
Q Consensus 157 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~-~gYP 191 (585)
+-||||+||+--. ..+.+...+.+.+ .|+|
T Consensus 1 iiFDlDGTL~Ds~-----~~~~~~~~~~~~~~~~~~ 31 (205)
T TIGR01454 1 VVFDLDGVLVDSF-----AVMREAFAIAYREVVGDG 31 (205)
T ss_pred CeecCcCccccCH-----HHHHHHHHHHHHHhcCCC
Confidence 4699999998643 2333333333444 4665
No 210
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=25.56 E-value=80 Score=30.14 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=30.4
Q ss_pred eeEecCccccCCccEEEEecccceeecCcc-chHHHHHHHHHHHHHhcCCCC
Q 007924 142 GIFCSRTLNLRSISAIGYDMDYTLMHYNVM-AWEGRAYDYCMVNLRNMGFPV 192 (585)
Q Consensus 142 ~IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~-~~e~L~y~~~~~~Lv~~gYP~ 192 (585)
.|..+. |.-..++++-+|+|+||..++.. .+.. ...+++.|.+.|++.
T Consensus 14 ~i~~~~-~~~~~v~~vv~D~Dgtl~~~~~~~~~pg--v~e~L~~Lk~~g~~l 62 (170)
T TIGR01668 14 DLTIDL-LKKVGIKGVVLDKDNTLVYPDHNEAYPA--LRDWIEELKAAGRKL 62 (170)
T ss_pred hCCHHH-HHHCCCCEEEEecCCccccCCCCCcChh--HHHHHHHHHHcCCEE
Confidence 344444 33469999999999999988752 2222 122445566677764
No 211
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=25.44 E-value=63 Score=28.82 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=27.1
Q ss_pred cccceeecCccchHHHHHHHHHHHHHhcCCCC
Q 007924 161 MDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 192 (585)
Q Consensus 161 mDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 192 (585)
|=|||-.|+-.-+...+--...++|.+.|||.
T Consensus 24 mgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~ 55 (89)
T PF08444_consen 24 MGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPF 55 (89)
T ss_pred ccccCHhHhcCCHHHHHHHHHHHHHHHCCCCe
Confidence 77999999988887777666778899999994
No 212
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.95 E-value=4.1e+02 Score=26.99 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=11.4
Q ss_pred eehHhhHHHHHHHH
Q 007924 461 LICRELEEEYNALI 474 (585)
Q Consensus 461 aIVpELe~Ei~i~~ 474 (585)
..+|+|+.|++.+.
T Consensus 93 ~rlp~le~el~~l~ 106 (206)
T PRK10884 93 TRVPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 56799999998763
No 213
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=24.81 E-value=4.3e+02 Score=27.79 Aligned_cols=125 Identities=18% Similarity=0.296 Sum_probs=70.7
Q ss_pred hhHHHHHcCcccccccCCCchHHHHHHhHcCc-eEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCC
Q 007924 311 QLKSEIMSKPELFVEPDPELPLALLDQKEAGK-KLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEF 389 (585)
Q Consensus 311 ~lk~~i~~npekYI~kdp~l~~~L~~lr~~GK-KlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~F 389 (585)
.+|+.+..=|. .|.++++++-+++.|- -|.+|+.+..-|.+.+...+ +--++|+=|.++ |+-
T Consensus 75 ~ik~~~r~iP~-----~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~---------~~~d~F~~IfTN---Pa~ 137 (256)
T KOG3120|consen 75 EIKQVLRSIPI-----VPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAA---------GIHDLFSEIFTN---PAC 137 (256)
T ss_pred HHHHHHhcCCC-----CccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHc---------cHHHHHHHHhcC---Ccc
Confidence 35555544333 5888888888888886 78999999999999999866 256777766554 444
Q ss_pred CCCCCCcEEeecC---C-CccccccccCCCccccCCCHHHHHHHh---CCCCCcEEEEcCccccchhhccccCCceEE
Q 007924 390 FQMSHPLYEVVTG---E-GLMRPCFKARTGGLYSGGSAQMIENSL---NIHGDEILYVGDHIYTDVSQSKVHLRWRTA 460 (585)
Q Consensus 390 F~~~~pf~~vd~~---~-g~l~~~~~l~~G~VYsgGn~~~l~~ll---g~~G~~VLYfGDHIygDIl~sKk~~gWRT~ 460 (585)
|..+-.+ .|.+. . ..+-| ..+-||.| .++|..-. |++-.++.|+||-= +|+-...+..+-+-+
T Consensus 138 ~da~G~L-~v~pyH~~hsC~~CP-sNmCKg~V-----l~~~~~s~~~~gv~yer~iYvGDG~-nD~CP~l~Lr~~D~a 207 (256)
T KOG3120|consen 138 VDASGRL-LVRPYHTQHSCNLCP-SNMCKGLV-----LDELVASQLKDGVRYERLIYVGDGA-NDFCPVLRLRACDVA 207 (256)
T ss_pred cCCCCcE-EeecCCCCCccCcCc-hhhhhhHH-----HHHHHHHHhhcCCceeeEEEEcCCC-CCcCcchhcccCcee
Confidence 4332111 11111 0 01111 01222222 12333322 44445899999974 677666655444433
No 214
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=24.68 E-value=39 Score=34.80 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccchhhcc--ccCCceEEee
Q 007924 423 AQMIENSLNIHGDEILYVGDHIYTDVSQSK--VHLRWRTALI 462 (585)
Q Consensus 423 ~~~l~~llg~~G~~VLYfGDHIygDIl~sK--k~~gWRT~aI 462 (585)
+..+.+.+|+.++.|+||||.. .|+---+ ...+.-+++|
T Consensus 179 l~~ll~~~~~~~~~v~~~GD~~-nD~~mf~~~~~~~g~~vav 219 (266)
T PRK10187 179 IAAFMQEAPFAGRTPVFVGDDL-TDEAGFAVVNRLGGISVKV 219 (266)
T ss_pred HHHHHHhcCCCCCeEEEEcCCc-cHHHHHHHHHhcCCeEEEE
Confidence 4567778899999999999954 4644322 2234566665
No 215
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=24.57 E-value=61 Score=29.95 Aligned_cols=17 Identities=24% Similarity=0.096 Sum_probs=14.1
Q ss_pred cEEEEecccceeecCcc
Q 007924 155 SAIGYDMDYTLMHYNVM 171 (585)
Q Consensus 155 ~~iGFDmDYTLa~Y~~~ 171 (585)
+++-||+|+||+.=++.
T Consensus 1 ~~~~~d~dgtl~~~~~~ 17 (147)
T TIGR01656 1 PALFLDRDGVINEDTVS 17 (147)
T ss_pred CeEEEeCCCceeccCCc
Confidence 47889999999987763
No 216
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=24.17 E-value=1.3e+02 Score=30.94 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred CCCeeEecCc------------ccc---CCccEEEEecccceeecC
Q 007924 139 SPRGIFCSRT------------LNL---RSISAIGYDMDYTLMHYN 169 (585)
Q Consensus 139 ~~~~IF~Nr~------------L~L---~~I~~iGFDmDYTLa~Y~ 169 (585)
.|..|||.+. ..+ ++|.++||| |-.++.+-
T Consensus 234 ~~~ai~~~~D~~A~g~~~al~~~g~~vP~di~vigfD-~~~~~~~~ 278 (327)
T PRK10339 234 YPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVN-DIPTARFT 278 (327)
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeC-ChhHHHhC
Confidence 3578999863 333 589999998 44455543
No 217
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.04 E-value=2.7e+02 Score=31.78 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhccCCCch----hhhcccCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhccCCCCC
Q 007924 495 DLFNQLRLSLQRRNRGHPAQ----TLAATNMDDQELTESMQKLLVVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDK 570 (585)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~Fn~~wG~lfRtG~~~~ 570 (585)
+++++|+.++++...+.+-. .+....-+++.....|.++...+++++.++--..++++..|+=..-.||+++- .
T Consensus 366 el~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sak--h 443 (521)
T KOG1937|consen 366 ELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAK--H 443 (521)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc--c
Confidence 56677777766543322100 00011122344555666777777777777766677778888888889999986 3
Q ss_pred ChhhHHhh
Q 007924 571 SHLMRQIE 578 (585)
Q Consensus 571 S~Fa~Qve 578 (585)
--=+|++.
T Consensus 444 ddhvR~ay 451 (521)
T KOG1937|consen 444 DDHVRLAY 451 (521)
T ss_pred CHHHHHHH
Confidence 33344443
No 218
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=23.87 E-value=72 Score=30.58 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=0.0
Q ss_pred EEEecccceeecCccchHHHHHHHHHHHHHhcC
Q 007924 157 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMG 189 (585)
Q Consensus 157 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~g 189 (585)
+-||||+||+.-+......-.. .++++|.+.|
T Consensus 2 i~~D~DgTL~~~~~~~~~~~~~-~~l~~l~~~g 33 (204)
T TIGR01484 2 LFFDLDGTLLDPNAHELSPETI-EALERLREAG 33 (204)
T ss_pred EEEeCcCCCcCCCCCcCCHHHH-HHHHHHHHCC
No 219
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=23.66 E-value=1.5e+02 Score=28.95 Aligned_cols=24 Identities=38% Similarity=0.773 Sum_probs=17.6
Q ss_pred CCCeeEecCc------------ccc---CCccEEEEecc
Q 007924 139 SPRGIFCSRT------------LNL---RSISAIGYDMD 162 (585)
Q Consensus 139 ~~~~IF~Nr~------------L~L---~~I~~iGFDmD 162 (585)
.+..|||++. ..+ ++|.++|||..
T Consensus 178 ~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vvg~d~~ 216 (269)
T cd06275 178 RPTAVFCGNDLMAMGALCAAQEAGLRVPQDLSIIGYDDI 216 (269)
T ss_pred CCcEEEECChHHHHHHHHHHHHcCCCCCcceEEEEeCCh
Confidence 4678999864 233 48999999964
No 220
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=23.65 E-value=63 Score=34.77 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=33.3
Q ss_pred CCCCCcEEEEcCccccchhhccccCCceEEeehHhhHHHHHHH
Q 007924 431 NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYNAL 473 (585)
Q Consensus 431 g~~G~~VLYfGDHIygDIl~sKk~~gWRT~aIVpELe~Ei~i~ 473 (585)
++.-++.|.|||-+=+||+--+ .+|..|.+|.-=...|-.++
T Consensus 238 ~i~psRt~mvGDRL~TDIlFG~-~~G~~TLLvltGv~~led~~ 279 (306)
T KOG2882|consen 238 NIDPSRTCMVGDRLDTDILFGK-NCGFKTLLVLSGVTTLEDIL 279 (306)
T ss_pred CCCcceEEEEcccchhhhhHhh-ccCcceEEEecCcCcHHHHH
Confidence 5667899999999999999887 47999999976555444443
No 221
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=23.22 E-value=1e+02 Score=32.12 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=39.7
Q ss_pred CccEEEEecccceeecCccchHHHHHHHHHHHHH-hcCCCCCCC-----CC--CccccccceE
Q 007924 153 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLR-NMGFPVEGL-----AF--DPDLVIRGLV 207 (585)
Q Consensus 153 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv-~~gYP~~~L-----~y--Dp~F~iRGLv 207 (585)
+++|+=||+|-||-.=+.. ...+.=+.+.+.++ ++|.|++.. .| .-.-.++||+
T Consensus 14 ~~~~l~FDiDdtLYp~St~-i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL~ 75 (244)
T KOG3109|consen 14 NYKCLFFDIDDTLYPLSTG-IQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGLK 75 (244)
T ss_pred cceEEEEecccccccCchh-HHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHHH
Confidence 8899999999999876644 56666666667777 489997642 22 3456688887
No 222
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=23.14 E-value=75 Score=32.45 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=36.7
Q ss_pred CCCeeEecCcc-c---------c----CCccEEEEecccceeecCccch-------HHHHHHHH---HHHHHhcCCCCCC
Q 007924 139 SPRGIFCSRTL-N---------L----RSISAIGYDMDYTLMHYNVMAW-------EGRAYDYC---MVNLRNMGFPVEG 194 (585)
Q Consensus 139 ~~~~IF~Nr~L-~---------L----~~I~~iGFDmDYTLa~Y~~~~~-------e~L~y~~~---~~~Lv~~gYP~~~ 194 (585)
.+..|||.+.. . + ++|.++||| |.-++.|-.|.+ +.|+...+ .+++.....+...
T Consensus 238 ~~~Ai~~~~D~~A~g~~~al~~~g~vP~dvsvigfd-~~~~~~~~~p~lTti~~~~~~~g~~a~~~l~~~i~~~~~~~~~ 316 (327)
T TIGR02417 238 LPQALFTTSYTLLEGVLDYMLERPLLDSQLHLATFG-DNYLLDFLPLPINSVAQQHRQLAWHALELALAAIDGKKPEPGQ 316 (327)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEEC-CchHHHccCCCceEEeCCHHHHHHHHHHHHHHHhcCCCCCCce
Confidence 36789998641 1 1 489999999 666777755433 44544433 2222211112122
Q ss_pred CCCCccccccc
Q 007924 195 LAFDPDLVIRG 205 (585)
Q Consensus 195 L~yDp~F~iRG 205 (585)
....|.+.+||
T Consensus 317 ~~i~~~li~r~ 327 (327)
T TIGR02417 317 RYIPRTLQIRH 327 (327)
T ss_pred EEeccEEEecC
Confidence 33567777776
No 223
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.14 E-value=3.9e+02 Score=23.16 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=22.3
Q ss_pred hHhhHHHHHHHHhchhHHHHHHHHHhHHHHHHHHHHH
Q 007924 463 CRELEEEYNALINSRGQRARLVELINQKEVVGDLFNQ 499 (585)
Q Consensus 463 VpELe~Ei~i~~~~~~~~~~l~~L~~~~~~l~~~~~~ 499 (585)
-||..++|..+.....++.+|.+- -..|.+.+.+
T Consensus 2 ~~Efr~~is~Lk~~dahF~rLfd~---hn~LDd~I~~ 35 (72)
T COG2841 2 FHEFRDLISKLKANDAHFARLFDK---HNELDDRIKR 35 (72)
T ss_pred chhHHHHHHHHhccchHHHHHHHH---HhHHHHHHHH
Confidence 378888888887777776666644 3445555443
No 224
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.98 E-value=2e+02 Score=30.92 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhh
Q 007924 523 DQELTESMQKLLVVMQRLDQKIAPM 547 (585)
Q Consensus 523 ~~~~~~~~~~l~~~~~~~d~~~~~~ 547 (585)
-.|-+++|++|+++++.|+..+++.
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchh
Confidence 3566778899999998888776554
No 225
>PRK11415 hypothetical protein; Provisional
Probab=22.16 E-value=4.9e+02 Score=22.12 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=35.1
Q ss_pred HhhHHHHHHHHhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCchhhhcccCChHHHHHHHHHHHHHHHHHHHh
Q 007924 464 RELEEEYNALINSRGQRARLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTESMQKLLVVMQRLDQK 543 (585)
Q Consensus 464 pELe~Ei~i~~~~~~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~ 543 (585)
||..+-|..+..+.+.+.+|.+ .|+.|+.++.+...+. .. .+ + .+++.|....=++..+
T Consensus 3 pe~~d~I~~Lk~~D~~F~~L~~----------~h~~Ld~~I~~lE~~~-~~------~~-d---~~i~~LKk~KL~LKDe 61 (74)
T PRK11415 3 PEYRDLISRLKNENPRFMSLFD----------KHNKLDHEIARKEGSD-GR------GY-N---AEVVRMKKQKLQLKDE 61 (74)
T ss_pred chHHHHHHHHHhcCHHHHHHHH----------HHHHHHHHHHHHHcCC-CC------CC-H---HHHHHHHHHHHHhHHH
Confidence 7777788888777665544443 3455555444433321 11 11 1 2344444455556666
Q ss_pred hhhhhhhh
Q 007924 544 IAPMLESD 551 (585)
Q Consensus 544 ~~~~~~~~ 551 (585)
|..++.+.
T Consensus 62 I~~~L~~~ 69 (74)
T PRK11415 62 MLKILQQE 69 (74)
T ss_pred HHHHHHHh
Confidence 76666543
No 226
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=22.07 E-value=66 Score=28.85 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=11.7
Q ss_pred EEEecccceeecCc
Q 007924 157 IGYDMDYTLMHYNV 170 (585)
Q Consensus 157 iGFDmDYTLa~Y~~ 170 (585)
|-||+|+||+.+..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 46999999998764
No 227
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.03 E-value=6.6e+02 Score=24.34 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 007924 523 DQELTESMQKLLVVMQRLDQKIAPMLES 550 (585)
Q Consensus 523 ~~~~~~~~~~l~~~~~~~d~~~~~~~~~ 550 (585)
++++.+||.+|+..+.+.+-+....+++
T Consensus 91 I~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 91 INAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888887777665555544444
No 228
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.91 E-value=58 Score=32.67 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=13.0
Q ss_pred CccEEEEecccceee
Q 007924 153 SISAIGYDMDYTLMH 167 (585)
Q Consensus 153 ~I~~iGFDmDYTLa~ 167 (585)
..+.+-||||+||+.
T Consensus 4 ~~~L~vFD~D~TLi~ 18 (212)
T COG0560 4 MKKLAVFDLDGTLIN 18 (212)
T ss_pred ccceEEEecccchhh
Confidence 456788999999998
No 229
>KOG3739 consensus Stress-activated MAP kinase-interacting protein, Sin1p [Signal transduction mechanisms]
Probab=21.78 E-value=97 Score=36.10 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=15.0
Q ss_pred ccceeccccccccee-ecccC
Q 007924 28 TSRVPVSSFSFNCLR-CSRSS 47 (585)
Q Consensus 28 ~~~~~~~~~~~~~~~-~~~~~ 47 (585)
-++-|+++|+|+||- |.+-+
T Consensus 340 Dr~~pi~kfGFs~l~Lvk~~~ 360 (634)
T KOG3739|consen 340 DRSEPISKFGFSCLALVKRIK 360 (634)
T ss_pred cccCcccccccceEEEEEecc
Confidence 356799999999985 55544
No 230
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=21.75 E-value=47 Score=32.10 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.9
Q ss_pred CCccEEEEecccceeec
Q 007924 152 RSISAIGYDMDYTLMHY 168 (585)
Q Consensus 152 ~~I~~iGFDmDYTLa~Y 168 (585)
+.|+.+-||+|+||..-
T Consensus 19 ~~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 19 ENIRLLICDVDGVFSDG 35 (183)
T ss_pred hCceEEEEcCCeeeecC
Confidence 45999999999999964
No 231
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.46 E-value=3.2e+02 Score=26.95 Aligned_cols=9 Identities=22% Similarity=0.538 Sum_probs=5.3
Q ss_pred hhHHhhhhc
Q 007924 573 LMRQIEKYA 581 (585)
Q Consensus 573 Fa~QveryA 581 (585)
||++|.+|.
T Consensus 89 YA~rISk~t 97 (188)
T PF10018_consen 89 YAHRISKFT 97 (188)
T ss_pred HHHHHHHhc
Confidence 566666654
No 232
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=21.39 E-value=48 Score=32.61 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=22.6
Q ss_pred HHHHHhCCCCCcEEEEcCccccchhhccccCCc
Q 007924 425 MIENSLNIHGDEILYVGDHIYTDVSQSKVHLRW 457 (585)
Q Consensus 425 ~l~~llg~~G~~VLYfGDHIygDIl~sKk~~gW 457 (585)
...+.++....+|+||||.. +|+..++ ..|.
T Consensus 151 ~~l~~~~~~~~~~i~iGDs~-~Di~aa~-~Ag~ 181 (219)
T PRK09552 151 SLIRKLSDTNDFHIVIGDSI-TDLEAAK-QADK 181 (219)
T ss_pred HHHHHhccCCCCEEEEeCCH-HHHHHHH-HCCc
Confidence 34455567778999999994 5888776 4577
No 233
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=1.7e+02 Score=27.75 Aligned_cols=101 Identities=18% Similarity=0.109 Sum_probs=53.5
Q ss_pred ccccccCCCceeeecCCcccccccCCcccccccccccccCCCCCCCCCCCCCcchHHHHHHHHHHHHhhhhhCCCCCCCC
Q 007924 57 AANKNVGDDVFSVTSSSEYDVDYLGESTKGDFNLNFDRLQPVGIDGEAALDGPIEEVARMEAQEAEHLLNDFGIPSPSSA 136 (585)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 136 (585)
-|+.|-|+..+|||..+.--.=+--++ + -.+-.++-.|=.|=.++||+.=.+..-.-. .++-|
T Consensus 25 ip~wa~~~~F~sIt~t~eelsivc~~~-----~-vp~~V~~~~GW~~lk~~gpf~FgltGilas---V~~pL-------- 87 (128)
T COG3603 25 IPAWADGPGFWSITRTPEELSIVCLAD-----R-VPDVVQIEKGWSCLKFEGPFDFGLTGILAS---VSQPL-------- 87 (128)
T ss_pred CccccCCCceEEEEcCCceEEEEeecc-----c-CCcceEecCCeEEEEEeccccCCcchhhhh---hhhhH--------
Confidence 378888999999987654221111111 0 011112223334444455554221111111 11111
Q ss_pred CCCCCeeEecCccccCCccEEEEecccceeecCccchHHHHHHHHHHHHHhcCCC
Q 007924 137 RNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 191 (585)
Q Consensus 137 ~~~~~~IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 191 (585)
..+.=.||++.+ ||=||-|++=+. -+.+++.|++.||-
T Consensus 88 sd~gigIFavSt----------ydtDhiLVr~~d-------LekAv~~L~eaGhe 125 (128)
T COG3603 88 SDNGIGIFAVST----------YDTDHILVREED-------LEKAVKALEEAGHE 125 (128)
T ss_pred hhCCccEEEEEe----------ccCceEEEehhh-------HHHHHHHHHHcCCc
Confidence 235557999985 688999998642 34678889988875
No 234
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=21.02 E-value=37 Score=33.69 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=10.3
Q ss_pred EEEEecccceee
Q 007924 156 AIGYDMDYTLMH 167 (585)
Q Consensus 156 ~iGFDmDYTLa~ 167 (585)
.+-||||+||+.
T Consensus 3 la~FDlD~TLi~ 14 (203)
T TIGR02137 3 IACLDLEGVLVP 14 (203)
T ss_pred EEEEeCCcccHH
Confidence 367999999994
No 235
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=20.90 E-value=87 Score=32.86 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=28.5
Q ss_pred CCCchHHHHHHhHcCceEEEEcCCChHhhHhhhccc
Q 007924 327 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 362 (585)
Q Consensus 327 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 362 (585)
-|....+|..+++.|.++|++||.+-...+..+..+
T Consensus 120 ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L 155 (266)
T TIGR01533 120 VAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL 155 (266)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH
Confidence 367788999999999999999999866665555444
No 236
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=20.76 E-value=31 Score=32.05 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=25.5
Q ss_pred HHcCcccccccC--CCchHHHHHHhHcCceEEEEcCCCh
Q 007924 316 IMSKPELFVEPD--PELPLALLDQKEAGKKLLLITNSDY 352 (585)
Q Consensus 316 i~~npekYI~kd--p~l~~~L~~lr~~GKKlFLiTNS~~ 352 (585)
+.++||-++|+. ..+..+|..+.+.+.++|+.|-|++
T Consensus 262 liDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 262 LIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp EEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred EecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 578899999885 3444555444445779999999975
No 237
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.59 E-value=26 Score=33.00 Aligned_cols=9 Identities=44% Similarity=1.169 Sum_probs=7.3
Q ss_pred CCCCCCccE
Q 007924 371 MGWRDLFNM 379 (585)
Q Consensus 371 ~dWrdyFDv 379 (585)
.-||||||+
T Consensus 111 ~~WRDYFDv 119 (130)
T COG4308 111 VLWRDYFDV 119 (130)
T ss_pred EeehhhhhH
Confidence 369999996
No 238
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=20.20 E-value=1.5e+02 Score=36.12 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=62.8
Q ss_pred CCchHHHHHHhHcCceEEEEcCCChHhhHhhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCCcEEeecCCCccc
Q 007924 328 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMR 407 (585)
Q Consensus 328 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A~KP~FF~~~~pf~~vd~~~g~l~ 407 (585)
|+.+..+.+++++|.|+.++|+-+-.-+..+...+-= .+++ .+..+.++.+. .| ...+.+ ...
T Consensus 540 ~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi--~~~~---~~v~~~~~~g~---~l-------~~~~~~--~~~ 602 (917)
T TIGR01116 540 PEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGI--FSPD---EDVTFKSFTGR---EF-------DEMGPA--KQR 602 (917)
T ss_pred hhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCC--CCCC---ccccceeeeHH---HH-------hhCCHH--HHH
Confidence 5789999999999999999999998888888776621 0111 11222232221 11 011100 000
Q ss_pred cccccCCCccccCCCHHH---HHHHhCCCCCcEEEEcCccccchhhcc
Q 007924 408 PCFKARTGGLYSGGSAQM---IENSLNIHGDEILYVGDHIYTDVSQSK 452 (585)
Q Consensus 408 ~~~~l~~G~VYsgGn~~~---l~~llg~~G~~VLYfGDHIygDIl~sK 452 (585)
....+..||+.-+..+ +.+.++..|..|+++||-+ .|+-..|
T Consensus 603 --~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~-ND~~alk 647 (917)
T TIGR01116 603 --AACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGV-NDAPALK 647 (917)
T ss_pred --HhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCc-chHHHHH
Confidence 0123345666666554 5556677899999999987 4665443
Done!