Query 007926
Match_columns 584
No_of_seqs 291 out of 1707
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 17:10:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 2E-154 5E-159 1213.3 29.1 531 1-583 1-563 (785)
2 PTZ00130 heat shock protein 90 100.0 3E-129 6E-134 1095.3 39.3 552 1-584 1-581 (814)
3 COG0326 HtpG Molecular chapero 100.0 9E-125 2E-129 1029.7 34.7 431 76-584 3-455 (623)
4 PTZ00272 heat shock protein 83 100.0 1E-123 2E-128 1047.4 41.1 472 78-584 3-492 (701)
5 KOG0019 Molecular chaperone (H 100.0 1E-116 3E-121 950.3 25.3 417 76-583 33-469 (656)
6 PRK05218 heat shock protein 90 100.0 9E-104 2E-108 881.9 37.1 422 76-584 2-445 (613)
7 PRK14083 HSP90 family protein; 100.0 9E-101 2E-105 853.0 35.2 399 79-584 2-415 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 1.5E-81 3.2E-86 691.7 15.5 299 259-584 1-319 (531)
9 PF13589 HATPase_c_3: Histidin 99.7 4.3E-17 9.4E-22 150.7 6.7 101 98-225 1-104 (137)
10 TIGR00585 mutl DNA mismatch re 99.4 1E-12 2.2E-17 137.1 10.8 161 95-285 17-193 (312)
11 COG1389 DNA topoisomerase VI, 99.2 3.9E-11 8.5E-16 129.0 10.7 135 102-257 38-184 (538)
12 PRK04184 DNA topoisomerase VI 99.1 3.2E-10 7E-15 126.2 12.7 152 102-277 38-203 (535)
13 COG0323 MutL DNA mismatch repa 99.1 6.6E-11 1.4E-15 134.6 7.4 153 98-284 21-191 (638)
14 PRK00095 mutL DNA mismatch rep 99.0 9E-10 1.9E-14 125.2 11.1 154 95-277 17-181 (617)
15 TIGR01052 top6b DNA topoisomer 99.0 2E-09 4.4E-14 118.8 12.2 159 103-284 31-202 (488)
16 PRK14868 DNA topoisomerase VI 98.9 8.9E-09 1.9E-13 117.7 10.4 148 103-275 49-207 (795)
17 PRK14867 DNA topoisomerase VI 98.4 7.6E-07 1.6E-11 101.5 9.8 150 103-276 39-199 (659)
18 PRK05559 DNA topoisomerase IV 98.4 8.6E-07 1.9E-11 101.3 8.7 162 101-286 38-211 (631)
19 TIGR01055 parE_Gneg DNA topois 98.2 2.1E-06 4.6E-11 98.1 7.4 161 101-286 31-204 (625)
20 smart00433 TOP2c Topoisomerase 98.2 1.7E-06 3.7E-11 98.3 6.3 156 104-285 5-174 (594)
21 KOG1979 DNA mismatch repair pr 98.2 3.2E-06 6.9E-11 93.8 7.9 155 97-284 24-197 (694)
22 PF02518 HATPase_c: Histidine 98.1 2E-06 4.4E-11 75.2 3.9 81 102-209 7-87 (111)
23 PRK14939 gyrB DNA gyrase subun 98.0 1.9E-05 4.1E-10 91.8 9.9 155 102-286 39-209 (756)
24 TIGR01059 gyrB DNA gyrase, B s 98.0 1.1E-05 2.4E-10 92.7 6.8 157 102-285 32-201 (654)
25 PRK05644 gyrB DNA gyrase subun 98.0 2E-05 4.4E-10 90.4 8.8 156 103-285 40-208 (638)
26 KOG1978 DNA mismatch repair pr 97.8 2.1E-05 4.7E-10 88.9 5.6 129 92-252 12-146 (672)
27 cd00075 HATPase_c Histidine ki 97.4 0.00029 6.2E-09 57.8 5.9 86 103-215 3-92 (103)
28 KOG1977 DNA mismatch repair pr 97.1 0.00019 4E-09 81.5 2.1 125 101-252 22-149 (1142)
29 PRK10755 sensor protein BasS/P 97.1 0.00052 1.1E-08 71.6 4.5 50 103-168 250-299 (356)
30 TIGR02916 PEP_his_kin putative 97.1 0.00052 1.1E-08 78.9 4.7 74 103-207 582-655 (679)
31 smart00387 HATPase_c Histidine 97.0 0.0009 2E-08 55.7 4.6 81 103-210 8-88 (111)
32 PRK11100 sensory histidine kin 96.9 0.0019 4.1E-08 69.0 6.7 51 103-169 371-421 (475)
33 TIGR01058 parE_Gpos DNA topois 96.9 0.0042 9.1E-08 71.6 9.9 159 103-286 37-207 (637)
34 PRK10549 signal transduction h 96.9 0.0012 2.6E-08 70.9 5.0 62 136-207 372-433 (466)
35 TIGR02938 nifL_nitrog nitrogen 96.8 0.0016 3.4E-08 69.4 5.5 56 102-169 389-444 (494)
36 TIGR01386 cztS_silS_copS heavy 96.8 0.0016 3.5E-08 69.3 5.2 84 136-253 373-456 (457)
37 PRK11086 sensory histidine kin 96.7 0.0026 5.7E-08 69.5 6.3 53 103-169 436-488 (542)
38 PRK10604 sensor protein RstB; 96.7 0.0016 3.5E-08 70.6 4.4 73 103-203 322-394 (433)
39 PRK09470 cpxA two-component se 96.6 0.0022 4.9E-08 68.5 5.0 48 104-169 357-404 (461)
40 PRK10364 sensor protein ZraS; 96.5 0.0033 7.2E-08 68.2 5.8 51 103-169 351-401 (457)
41 PRK15347 two component system 96.5 0.0032 6.9E-08 73.9 5.5 50 103-169 516-565 (921)
42 PRK11466 hybrid sensory histid 96.4 0.0047 1E-07 72.7 6.2 83 104-217 565-651 (914)
43 PLN03237 DNA topoisomerase 2; 96.3 0.015 3.3E-07 71.8 10.1 162 102-287 79-260 (1465)
44 PRK11360 sensory histidine kin 96.3 0.0045 9.8E-08 67.5 5.3 50 104-169 504-554 (607)
45 TIGR02956 TMAO_torS TMAO reduc 96.3 0.0068 1.5E-07 71.7 6.9 85 103-216 582-671 (968)
46 PRK11006 phoR phosphate regulo 96.3 0.0039 8.5E-08 67.2 4.5 52 102-169 319-370 (430)
47 PRK10815 sensor protein PhoQ; 96.2 0.0046 1E-07 68.6 4.8 48 104-169 382-429 (485)
48 PLN03128 DNA topoisomerase 2; 96.2 0.023 5E-07 69.3 10.7 161 103-287 55-235 (1135)
49 COG0187 GyrB Type IIA topoisom 96.1 0.026 5.6E-07 64.4 9.9 162 101-287 37-211 (635)
50 PTZ00108 DNA topoisomerase 2-l 96.0 0.029 6.3E-07 69.4 10.0 164 102-286 59-241 (1388)
51 PRK09303 adaptive-response sen 95.7 0.018 3.8E-07 61.7 6.1 83 97-207 266-352 (380)
52 TIGR02966 phoR_proteo phosphat 95.7 0.015 3.2E-07 58.6 5.1 50 104-169 233-282 (333)
53 PHA02569 39 DNA topoisomerase 95.6 0.04 8.7E-07 63.3 8.8 157 103-286 48-223 (602)
54 PRK15053 dpiB sensor histidine 95.3 0.019 4.1E-07 63.5 4.8 79 104-207 436-514 (545)
55 PRK11091 aerobic respiration c 95.3 0.11 2.4E-06 60.5 11.2 90 103-218 401-495 (779)
56 PRK10841 hybrid sensory kinase 95.2 0.028 6.1E-07 67.5 6.2 87 103-216 565-655 (924)
57 COG4191 Signal transduction hi 95.1 0.022 4.8E-07 64.5 4.7 62 82-169 491-552 (603)
58 PRK13837 two-component VirA-li 95.1 0.097 2.1E-06 61.9 10.2 83 103-217 563-664 (828)
59 PRK10618 phosphotransfer inter 95.0 0.039 8.4E-07 66.2 6.6 87 103-217 568-661 (894)
60 PRK03660 anti-sigma F factor; 94.8 0.059 1.3E-06 49.5 5.7 48 102-162 41-88 (146)
61 TIGR01925 spIIAB anti-sigma F 94.8 0.066 1.4E-06 48.7 5.9 46 103-161 42-87 (137)
62 PTZ00109 DNA gyrase subunit b; 94.7 0.14 2.9E-06 61.1 9.6 164 102-287 131-358 (903)
63 PRK10490 sensor protein KdpD; 94.5 0.051 1.1E-06 65.1 5.9 51 103-169 781-831 (895)
64 COG0642 BaeS Signal transducti 94.4 0.055 1.2E-06 53.3 4.9 49 102-167 230-278 (336)
65 PRK09835 sensor kinase CusS; P 94.4 0.056 1.2E-06 58.3 5.3 33 137-169 396-428 (482)
66 PRK10337 sensor protein QseC; 94.3 0.056 1.2E-06 58.1 5.0 46 104-169 356-401 (449)
67 PRK09467 envZ osmolarity senso 94.1 0.059 1.3E-06 57.6 4.8 33 137-169 350-382 (435)
68 PRK11107 hybrid sensory histid 94.1 0.086 1.9E-06 62.0 6.5 87 104-217 412-507 (919)
69 COG3290 CitA Signal transducti 94.0 0.086 1.9E-06 59.4 5.8 72 102-201 429-500 (537)
70 TIGR03785 marine_sort_HK prote 93.9 0.078 1.7E-06 61.9 5.6 80 103-208 600-679 (703)
71 PRK09959 hybrid sensory histid 93.9 0.071 1.5E-06 65.0 5.4 50 103-169 831-885 (1197)
72 COG5000 NtrY Signal transducti 93.5 0.15 3.3E-06 58.2 6.6 53 106-169 606-660 (712)
73 PRK04069 serine-protein kinase 93.0 0.22 4.7E-06 47.4 6.1 52 103-167 45-96 (161)
74 PF13581 HATPase_c_2: Histidin 93.0 0.17 3.6E-06 45.2 5.0 81 102-212 33-113 (125)
75 TIGR01924 rsbW_low_gc serine-p 92.2 0.16 3.4E-06 48.5 4.0 87 103-214 45-131 (159)
76 COG0643 CheA Chemotaxis protei 91.7 0.19 4.1E-06 59.0 4.7 128 104-254 436-572 (716)
77 PRK10600 nitrate/nitrite senso 91.6 0.22 4.7E-06 56.1 4.9 43 104-163 473-515 (569)
78 PRK13560 hypothetical protein; 91.2 0.2 4.4E-06 57.4 4.2 47 104-163 715-762 (807)
79 PRK10547 chemotaxis protein Ch 91.2 0.9 1.9E-05 53.2 9.4 55 105-167 390-448 (670)
80 PRK11644 sensory histidine kin 90.5 0.29 6.2E-06 54.8 4.5 43 104-163 414-456 (495)
81 COG4585 Signal transduction hi 90.5 0.25 5.4E-06 52.6 3.8 48 102-166 281-328 (365)
82 COG3920 Signal transduction hi 90.3 0.47 1E-05 47.9 5.4 48 103-163 125-174 (221)
83 PRK11073 glnL nitrogen regulat 89.9 0.48 1E-05 49.0 5.2 51 102-167 239-299 (348)
84 KOG0787 Dehydrogenase kinase [ 88.4 1.4 3.1E-05 47.9 7.6 125 101-260 261-385 (414)
85 COG3850 NarQ Signal transducti 84.6 1.4 3E-05 50.0 5.2 43 104-163 485-527 (574)
86 PRK13557 histidine kinase; Pro 83.6 1.8 3.9E-05 47.2 5.5 20 150-169 326-345 (540)
87 COG2172 RsbW Anti-sigma regula 83.1 3.3 7.2E-05 39.4 6.4 84 102-216 42-128 (146)
88 COG4251 Bacteriophytochrome (l 82.4 1.4 3.1E-05 50.8 4.3 66 139-216 658-729 (750)
89 COG2972 Predicted signal trans 81.7 6.5 0.00014 43.6 9.1 56 98-167 348-405 (456)
90 PRK10935 nitrate/nitrite senso 80.2 2.4 5.1E-05 47.1 5.0 25 138-162 492-517 (565)
91 COG2205 KdpD Osmosensitive K+ 77.1 6.3 0.00014 47.0 7.3 40 134-173 793-832 (890)
92 COG5002 VicK Signal transducti 76.2 5.5 0.00012 43.5 6.0 53 139-201 363-417 (459)
93 PRK13559 hypothetical protein; 74.6 3.6 7.8E-05 43.0 4.2 47 103-162 270-318 (361)
94 KOG1845 MORC family ATPases [C 72.3 2.9 6.2E-05 49.5 3.1 95 103-216 149-246 (775)
95 COG4192 Signal transduction hi 71.1 7.4 0.00016 43.9 5.6 49 104-169 568-619 (673)
96 KOG0355 DNA topoisomerase type 68.9 10 0.00022 45.2 6.4 123 104-252 57-192 (842)
97 COG4564 Signal transduction hi 48.9 20 0.00042 39.1 3.9 59 96-167 351-409 (459)
98 COG3851 UhpB Signal transducti 43.5 30 0.00065 38.2 4.3 27 135-161 428-454 (497)
99 KOG1845 MORC family ATPases [C 43.3 18 0.00038 43.2 2.8 52 151-217 2-54 (775)
100 COG2865 Predicted transcriptio 36.6 1.5E+02 0.0033 33.7 8.6 84 95-202 265-352 (467)
101 TIGR00032 argG argininosuccina 29.2 91 0.002 34.5 5.3 43 136-201 211-253 (394)
102 PRK13820 argininosuccinate syn 27.8 96 0.0021 34.4 5.2 50 136-210 211-260 (394)
103 PRK04527 argininosuccinate syn 26.1 1.1E+02 0.0023 34.2 5.2 50 136-210 214-263 (400)
104 COG3852 NtrB Signal transducti 26.0 90 0.002 33.9 4.4 18 150-167 289-306 (363)
105 PRK00509 argininosuccinate syn 25.5 1.1E+02 0.0023 34.1 5.1 50 136-210 214-263 (399)
106 PF08163 NUC194: NUC194 domain 24.9 26 0.00057 38.7 0.3 24 436-459 304-327 (394)
107 PLN00200 argininosuccinate syn 24.5 1.2E+02 0.0026 33.7 5.3 49 137-210 219-267 (404)
108 COG5381 Uncharacterized protei 23.0 4.2E+02 0.009 26.0 7.8 84 102-202 65-149 (184)
109 PF05984 Cytomega_UL20A: Cytom 22.0 1.1E+02 0.0023 27.1 3.3 29 1-29 1-31 (100)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-154 Score=1213.34 Aligned_cols=531 Identities=61% Similarity=0.995 Sum_probs=491.2
Q ss_pred CCcccchhHHHHHHHHHhcCCCcccccccccccccccCCCcccccccCCCCCCCCCchhhhhhhhhhhh--------hhh
Q 007926 1 MRKWTIPSILLLLFLVALIPDQGRNIQAKAEDESDKLVDPPKVEEKLGAVPNGLSTDSDVAKREAESIS--------KRS 72 (584)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 72 (584)
|+.+.+.+++||+.+++++++.....++ .+++++|.+++|++++.++++|++++|+ .|+
T Consensus 1 m~~~~lv~~~~L~~~~~l~ad~~~~~~~-------------~~ee~~~~~~e~sk~e~e~~~ree~si~lDgl~~~q~ke 67 (785)
T KOG0020|consen 1 MRKRTLVSVLLLFGFLFLLADDERKLHA-------------TAEEDLGDVTEGSKTEEEIGGREEESIQLDGLNVSQIKE 67 (785)
T ss_pred CcchhHHHHHHHHHHHHhcccccccccc-------------chhhhccccCCCCcchhhhccccchheecccccHHHHHH
Confidence 8888888888888777888777665554 4667799999999999999999999998 899
Q ss_pred hcccccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEE
Q 007926 73 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILS 152 (584)
Q Consensus 73 ~~~~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~ 152 (584)
+|+.+++|.||++|+|||+||+|+||+|+++|||||||||+||++|+|+++|+|+..+ +.++++.|+|..|++++.|+
T Consensus 68 lR~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L--~~~~el~ikIK~Dke~klLh 145 (785)
T KOG0020|consen 68 LRSKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVL--GETEELEIKIKADKEKKLLH 145 (785)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHh--CcCcceEEEEeechhhCeee
Confidence 9999999999999999999999999999999999999999999999999999999999 67899999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCC-----CCccccccceeeEEEeecCEEEEEEeeCCCceeEEEec
Q 007926 153 IRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD-----LNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESK 227 (584)
Q Consensus 153 I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~-----~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~ 227 (584)
|+|+|||||++||++||||||+||+++|+++|++.++ .++||||||||||+|+|||+|+|+|+++++.+|+|+|+
T Consensus 146 i~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESd 225 (785)
T KOG0020|consen 146 ITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESD 225 (785)
T ss_pred EecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeecc
Confidence 9999999999999999999999999999999987544 38999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHh
Q 007926 228 ADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKA 307 (584)
Q Consensus 228 ~~~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (584)
+. +|+|.++|++++++|||+|+|+|++++.+||++++|++||++||+||+|||++|.++++++++|.+|+++..++
T Consensus 226 an-~FsvseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~--- 301 (785)
T KOG0020|consen 226 AN-SFSVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEED--- 301 (785)
T ss_pred Cc-ceeeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeecccccccccccc---
Confidence 86 99999999999999999999999999999999999999999999999999999999999999998776443221
Q ss_pred hhhhhhccccCCCcccccccccCCCcccceeccceeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeee
Q 007926 308 EKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHF 387 (584)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf 387 (584)
+ ..+++ ..++|+++++||||+|++|+|+|+.+|+.+|||+|+|++|+++||..|||++++++ .+||+|+||
T Consensus 302 --~-~ed~e----a~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds--~dPma~~HF 372 (785)
T KOG0020|consen 302 --S-TEDKE----AAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDS--TDPMAYIHF 372 (785)
T ss_pred --c-ccchh----hhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccc--cCccceeee
Confidence 0 00111 12233444569999999999999999999999999999999999999999999999 789999999
Q ss_pred ecccceeeEEEEEeCCCCCcchhhhhhcccccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcch
Q 007926 388 NAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHS 467 (584)
Q Consensus 388 ~~eg~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~ 467 (584)
.+||+|+||+|||||+.+|.++|+.|+++...+||||||||||||+|.+|||+||+||||||||||||||||||+||||+
T Consensus 373 ~aEGeVtFksiLyVP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHk 452 (785)
T KOG0020|consen 373 TAEGEVTFKSILYVPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFHDMMPKYLSFIKGVVDSDDLPLNVSRETLQQHK 452 (785)
T ss_pred eccccEEEEEEEEeCCCCchHHHHHhccccccceeEEEEEEEecchHHHHhHHHHHHHhhccCcCcCcccccHHHHHHHH
Confidence 99999999999999999999999999878889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccchhHHHH-HHHHhchhceeeeccChhhHHHHhccce
Q 007926 468 SLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTK-FWNEFGKSIKLGIIEDAANRNRLAKLLR 546 (584)
Q Consensus 468 ~l~~Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~k-f~~~fg~~lK~G~~eD~~nr~~la~Llr 546 (584)
+|++|||+||||+|+||++++.+ +|.. ||++||++||+||+||++||.+||||||
T Consensus 453 llKvIkKKLvrK~LDmikKia~e------------------------~~~d~FW~EFgtniKLGviED~sNr~rLAKLLr 508 (785)
T KOG0020|consen 453 LLKVIKKKLVRKVLDMIKKIAGE------------------------KYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLR 508 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc------------------------ccchHHHHHhccceeeeeeeCcccHHHHHHHHh
Confidence 99999999999999999999987 7766 9999999999999999999999999999
Q ss_pred eeeccCCCccceee------------ehhhhc------CCchhHhhhhhcCcccc
Q 007926 547 FERYLFYSLNLSYE------------YFYFSR------ISLPFVSASFSHGVCTL 583 (584)
Q Consensus 547 f~ss~~~~~~~s~~------------~~y~~~------~~~p~~~~~~~~g~~~l 583 (584)
|+||++++..||++ +||+++ +++|||+++++||+||+
T Consensus 509 Fqss~~~~~~TsLdqYveRMK~kQ~~IyymaGssr~e~E~sPfvERLlkKGyEVi 563 (785)
T KOG0020|consen 509 FQSSNHPTKITSLDQYVERMKEKQDKIYYMAGSSRKEVEKSPFVERLLKKGYEVI 563 (785)
T ss_pred hhccCCCCCcccHHHHHHHHhhccccEEEecCCcHhhhccCcHHHHHHhcCceEE
Confidence 99999999999985 467664 35999999999999997
No 2
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=2.7e-129 Score=1095.30 Aligned_cols=552 Identities=43% Similarity=0.702 Sum_probs=455.0
Q ss_pred CCcccchhHHHHHHHHHhcCCCcccccccccccccccCCCcccccccCCCCCCCCCchhhhhh--hhhhhhhhhhccccc
Q 007926 1 MRKWTIPSILLLLFLVALIPDQGRNIQAKAEDESDKLVDPPKVEEKLGAVPNGLSTDSDVAKR--EAESISKRSLRNNAE 78 (584)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e 78 (584)
|+..+++-+.|++|.| +++++..+|+.- |..+|++.++ |..+.-...|.+.+.. ++|.++ ++.+
T Consensus 1 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e 66 (814)
T PTZ00130 1 MKLNRVFFCAFVICAL-----QPNWVPQLCNVL--CESDEGKSEE--KEEKEEVKKDRDNIPEIEDGEKPT-----SGIE 66 (814)
T ss_pred Cccceeeeehhhhhhc-----CccchhhhCcee--ecCCCCcccC--CCCcchhhcccccCcccccCCCCC-----cccc
Confidence 6666666555555444 355666666665 7777776544 2333444466666554 444444 5678
Q ss_pred ceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCC
Q 007926 79 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGI 158 (584)
Q Consensus 79 ~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGi 158 (584)
+|+||||+++||+||+++|||+++||||||||||+|||+|+||++++++.++ +..+++.|+|..|+++++|+|+||||
T Consensus 67 ~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~--~~~~~~~I~I~~D~~~~tLtI~DnGI 144 (814)
T PTZ00130 67 QHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL--GEEKKLEIRISANKEKNILSITDTGI 144 (814)
T ss_pred eeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhc--CCCCCceEEEEECCCCCEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999887 56678899999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccchhHHHHhhhh-cCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEeC
Q 007926 159 GMTKEDLIKNLGTIAKSGTSAFVEKMQT-SGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISED 237 (584)
Q Consensus 159 GMT~eeL~~~LgtIa~Sg~~~f~~~l~~-~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~ 237 (584)
|||++||+++|||||+||++.|+++++. +.+.++||||||||||||||||+|+|+|+++++.+|+|+|+|+|.|+|.+.
T Consensus 145 GMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y~I~e~ 224 (814)
T PTZ00130 145 GMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKFTIYKD 224 (814)
T ss_pred CCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcEEEEEC
Confidence 9999999999999999999999998874 346789999999999999999999999999888899999999999999998
Q ss_pred CCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhhhhhhhcccc
Q 007926 238 TWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSE 317 (584)
Q Consensus 238 ~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (584)
+++++.+|||+|+|||++++.+|++.++|++||++||+||+|||+|++.+++.++++.++..+. ++ + +.+++.
T Consensus 225 ~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~--~~----~-~~~~~~ 297 (814)
T PTZ00130 225 PRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEM--EN----D-PNYDSV 297 (814)
T ss_pred CCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEcccccccccccccccccc--cc----c-cccccc
Confidence 7666678999999999999999999999999999999999999999876654444433211000 00 0 001111
Q ss_pred CCCcccccccccCCCcccceeccceeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceeeEE
Q 007926 318 SESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKA 397 (584)
Q Consensus 318 ~~~~~~~~~~~~~~~~k~v~~~~~~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f~~ 397 (584)
++ ++. +++++++|+|++++++|++||+++|||+|+|++||++||.+|||++++++ ++||+|+||++||+++|+|
T Consensus 298 e~-~~~---~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~--~dPl~~iH~~~Eg~~~~~~ 371 (814)
T PTZ00130 298 KV-EET---DDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFN--DEPLYHIHFFAEGEIEFKC 371 (814)
T ss_pred cc-ccc---ccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCc--cCCceeeeeccCCCeeEEE
Confidence 11 111 12356678899999999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEEeCCCCCcchhhhhhcccccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHHHH
Q 007926 398 VLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLI 477 (584)
Q Consensus 398 llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~lv 477 (584)
|||||+++|+++|. + ...+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|+
T Consensus 372 LLYIP~~ap~~~~~-~-~~~~~~ikLYvrrVfI~d~~~dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~ 449 (814)
T PTZ00130 372 LIYIPSRAPSINDH-L-FTKQNSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIV 449 (814)
T ss_pred EEEecCCCccchhh-h-hhccCceEEEEeeEEeecchhhhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHH
Confidence 99999999998765 1 135789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCC------CCCcccccc--cCCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeee
Q 007926 478 RKALDMIRKIAEEDPDEST------GKDKKDVEK--FSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFER 549 (584)
Q Consensus 478 ~k~l~~l~~la~~~~~~~~------~~~~~~~~~--~~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~s 549 (584)
+|+++||++|++++..+.+ +.++++..+ .....++|++|.+||++||.+||+||++|..||++|++||||+|
T Consensus 450 kkil~~L~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~S 529 (814)
T PTZ00130 450 RKILDTFRTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKT 529 (814)
T ss_pred HHHHHHHHHHHhhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeee
Confidence 9999999999985222211 111111000 00111378999999999999999999999999999999999999
Q ss_pred ccCCCccceee------------ehhhhcC------CchhHhhhhhcCccccC
Q 007926 550 YLFYSLNLSYE------------YFYFSRI------SLPFVSASFSHGVCTLL 584 (584)
Q Consensus 550 s~~~~~~~s~~------------~~y~~~~------~~p~~~~~~~~g~~~ll 584 (584)
|++. .++|++ |||++++ ++|+++.++++|+|||+
T Consensus 530 s~~~-~~~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~ 581 (814)
T PTZ00130 530 MLHP-KSISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVF 581 (814)
T ss_pred CCCC-CccCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEE
Confidence 9875 456663 4566543 59999999999999985
No 3
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-125 Score=1029.70 Aligned_cols=431 Identities=49% Similarity=0.861 Sum_probs=400.9
Q ss_pred cccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEE
Q 007926 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (584)
Q Consensus 76 ~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~D 155 (584)
..+++.||+|+++||+||+|||||||+||||||||||+|||+|+||.++++|... +..++++|+|.+|++++||+|+|
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~--~~~~~~~I~i~~Dk~~kTLtI~D 80 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELG--EGDSDLRIRISFDKDNKTLTISD 80 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCcccc--CCCCCceEEEEEcccCCEEEEEe
Confidence 4688999999999999999999999999999999999999999999999999877 66778999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccchhHHHHhhhhc-CCCCccccccceeeEEEeecCEEEEEEeeCC-CceeEEEecCCCceE
Q 007926 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-GDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQYVWESKADGAFA 233 (584)
Q Consensus 156 NGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~-~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~-~~~~~W~s~~~~~f~ 233 (584)
||||||++|++++|||||+|||++|++.+++. .+.++||||||||||||||||+|+|+|++++ +.++.|+|+|+|.|+
T Consensus 81 NGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~yt 160 (623)
T COG0326 81 NGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYT 160 (623)
T ss_pred CCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceE
Confidence 99999999999999999999999999998754 4789999999999999999999999999996 578899999999999
Q ss_pred EEeCCCCCCCC-CCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhhhhhh
Q 007926 234 ISEDTWNEPLG-RGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEE 312 (584)
Q Consensus 234 I~~~~~~~~~~-~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (584)
|.+.+. .. +||+|+|||+++..+|++.|+|+++|++||.||++||++.+++.. +
T Consensus 161 v~~~~~---~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~--------------------~-- 215 (623)
T COG0326 161 VEDIDK---EPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEK--------------------D-- 215 (623)
T ss_pred EeeccC---CCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccc--------------------c--
Confidence 999753 34 699999999999999999999999999999999999999764311 0
Q ss_pred hccccCCCcccccccccCCCcccceeccceeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccc
Q 007926 313 TEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGD 392 (584)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~ 392 (584)
+ + +.+|+.||.++|||+|+++++++++|.+||++++++| ++||.|+|+++||.
T Consensus 216 --------~--------~---------~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~--~~Pl~~~h~~~EG~ 268 (623)
T COG0326 216 --------E--------E---------VIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDF--DDPLLWIHNKVEGR 268 (623)
T ss_pred --------c--------c---------chhHHHhccccCcccCChhhCChHHHHHHHHHhhccc--CCCeEEEecccccc
Confidence 0 0 2368999999999999999999999999999999999 89999999999999
Q ss_pred eeeEEEEEeCCCCCcchhhhhhcccccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHH
Q 007926 393 VEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTI 472 (584)
Q Consensus 393 v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~I 472 (584)
++|.+|||||.++|+|+|.+ ..++++|||||||||||+|.+|||.||+||+|||||+|||||||||+||+|++++.|
T Consensus 269 ~ey~~ll~iP~~aPfdl~~~---~~k~glkLYv~rVfI~Dd~~~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~I 345 (623)
T COG0326 269 LEYTALLFIPSKAPFDLFRR---DRKRGLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAI 345 (623)
T ss_pred eEEEEEEEccCCCCcccccc---cccCCcEEEEeeeEEeCChhhhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHH
Confidence 99999999999999999975 457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeee-cc
Q 007926 473 KKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFER-YL 551 (584)
Q Consensus 473 rk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~s-s~ 551 (584)
|+.|++|+++||++||++ +|++|.+||++||.+||+|+++|..||++|++||||.| +.
T Consensus 346 rk~l~kkvl~~L~~La~~---------------------~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~ 404 (623)
T COG0326 346 RKALTKKVLSMLEKLAKD---------------------DPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSD 404 (623)
T ss_pred HHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCC
Confidence 999999999999999999 99999999999999999999999999999999999999 45
Q ss_pred CCCccceee------------ehhhhcC------CchhHhhhhhcCccccC
Q 007926 552 FYSLNLSYE------------YFYFSRI------SLPFVSASFSHGVCTLL 584 (584)
Q Consensus 552 ~~~~~~s~~------------~~y~~~~------~~p~~~~~~~~g~~~ll 584 (584)
+...++|++ +||++++ ++|+++.+++||++|||
T Consensus 405 ~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~sP~lE~~k~kgieVL~ 455 (623)
T COG0326 405 SGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSPHLELFKAKGIEVLL 455 (623)
T ss_pred CccCcccHHHHHHhcccccceeEEeccccHHHHhcCchHHHHHhcCcEEEe
Confidence 567778874 4777654 59999999999999996
No 4
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=1.1e-123 Score=1047.39 Aligned_cols=472 Identities=50% Similarity=0.842 Sum_probs=417.0
Q ss_pred cceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECC
Q 007926 78 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRG 157 (584)
Q Consensus 78 e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNG 157 (584)
|+|+||||+++||+||+|||||++++|||||||||+|||+|+|+.+++++.++ +..+++.|+|..|.++++|+|+|||
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~i~~d~~~~~L~I~DnG 80 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVL--GESPRLCIRVVPDKENKTLTVEDNG 80 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhc--CCCCceEEEEEEcCCCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999999887 4557789999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEeC
Q 007926 158 IGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISED 237 (584)
Q Consensus 158 iGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~ 237 (584)
+|||++||.++||+||+||++.|+++++.+.+.++|||||||||||||||++|+|+|+++++.+|+|+|+|+|.|+|.+.
T Consensus 81 iGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i~~~ 160 (701)
T PTZ00272 81 IGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITST 160 (701)
T ss_pred CCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEEEeC
Confidence 99999999999999999999999988865566789999999999999999999999999877899999999999999987
Q ss_pred CCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhhhhhhhcccc
Q 007926 238 TWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSE 317 (584)
Q Consensus 238 ~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (584)
++ ....|||+|+|||++++.+|++.++|+++|++||+||+|||+++..++.+.++++++++....+ + ++.+++
T Consensus 161 ~~-~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~ 233 (701)
T PTZ00272 161 PE-SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKA-----D-EDGEEP 233 (701)
T ss_pred CC-CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhcccc-----c-cccccc
Confidence 63 4568999999999999999999999999999999999999999876654444333211100000 0 001111
Q ss_pred CCCcccccccccCCCcccceeccceeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceeeEE
Q 007926 318 SESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKA 397 (584)
Q Consensus 318 ~~~~~~~~~~~~~~~~k~v~~~~~~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f~~ 397 (584)
++.+..+++++++++++++++++|+|++||+++|||+|+|++||++||.+|||+++++| ++||+|+||++||+++|+|
T Consensus 234 ~~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~--~~Pl~~ih~~~eg~~~~~~ 311 (701)
T PTZ00272 234 KVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDW--EDPAATKHFSVEGQLEFRS 311 (701)
T ss_pred ccccccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCc--CCCceeeeeccCCceeeEE
Confidence 12111112223456778899999999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEEeCCCCCcchhhhhhcccccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHHHH
Q 007926 398 VLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLI 477 (584)
Q Consensus 398 llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~lv 477 (584)
|||||+.+|+++|+. ....++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|+
T Consensus 312 llyiP~~~~~~~~~~--~~~~~~i~LY~~rVfI~d~~~~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~ 389 (701)
T PTZ00272 312 IMFVPKRAPFDMFEP--NKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIV 389 (701)
T ss_pred EEEeCCCCccchhhh--hhccCceEEEEeeEEEecchhhhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHH
Confidence 999999999999864 234689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcccccccCCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCCCccc
Q 007926 478 RKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFYSLNL 557 (584)
Q Consensus 478 ~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~~~~~ 557 (584)
+|+++||++||++ +++|.+||++||.+||+|+++|..||++|++||||+||.+++.++
T Consensus 390 ~ki~~~l~~la~~----------------------~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~ 447 (701)
T PTZ00272 390 KKCLEMFDEVAEN----------------------KEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMT 447 (701)
T ss_pred HHHHHHHHHHhhC----------------------HHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCcee
Confidence 9999999999865 469999999999999999999999999999999999998777788
Q ss_pred eee------------ehhhhcC------CchhHhhhhhcCccccC
Q 007926 558 SYE------------YFYFSRI------SLPFVSASFSHGVCTLL 584 (584)
Q Consensus 558 s~~------------~~y~~~~------~~p~~~~~~~~g~~~ll 584 (584)
|++ |||+++. ++|+++++++||+||||
T Consensus 448 sL~eYv~rmk~~Q~~IYY~~~~s~~~~~~sP~lE~~~~kg~EVL~ 492 (701)
T PTZ00272 448 TLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLF 492 (701)
T ss_pred eHHHHHHhhccCCceEEEEeCCCHHHHHhChHHHHHHhCCCeEEE
Confidence 885 5777753 69999999999999996
No 5
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-116 Score=950.29 Aligned_cols=417 Identities=44% Similarity=0.792 Sum_probs=398.9
Q ss_pred cccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEE
Q 007926 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (584)
Q Consensus 76 ~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~D 155 (584)
.+|+|.|||++++||+++++++||++++|||||||||+||++|+||.++++|+.+ .+++.|+|.+++++++|+|.|
T Consensus 33 ~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~----~~~l~I~i~~nk~~~tlti~D 108 (656)
T KOG0019|consen 33 PQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA----LPELEIRIITNKDKRTITIQD 108 (656)
T ss_pred cccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc----ccceeEEeccCCCcceEEEEe
Confidence 4589999999999999999999999999999999999999999999999999854 688999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccchhHHHHhhh-hcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEE
Q 007926 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ-TSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAI 234 (584)
Q Consensus 156 NGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~-~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I 234 (584)
+|||||++||.+||||||+||++.|+++++ .+.+.++||||||||||+|||||+|+|+|+++++.++.|+++++|+|+|
T Consensus 109 tGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~gs~~v 188 (656)
T KOG0019|consen 109 TGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRGSYEI 188 (656)
T ss_pred cCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCCceEE
Confidence 999999999999999999999999999999 5788899999999999999999999999999988899999999999999
Q ss_pred EeCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhhhhhhhc
Q 007926 235 SEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETE 314 (584)
Q Consensus 235 ~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (584)
..++ ...|||+|+||||++..+|+++.+|+++|++||+|+.|||++|++
T Consensus 189 ~~~~---~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~e---------------------------- 237 (656)
T KOG0019|consen 189 AEAS---GLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNGE---------------------------- 237 (656)
T ss_pred eecc---CccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhhh----------------------------
Confidence 9874 389999999999998889999999999999999999999999862
Q ss_pred cccCCCcccccccccCCCcccceeccceeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeeccccee
Q 007926 315 KSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVE 394 (584)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~k~v~~~~~~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~ 394 (584)
.+|..+|||+|+|++||.+||.+|||+++++| ++||++.||++||+++
T Consensus 238 ------------------------------k~N~tKpiW~rnp~dit~eey~eFYksl~ndw--~d~lav~hf~~eg~le 285 (656)
T KOG0019|consen 238 ------------------------------RVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDW--DDPLYVLHFKTDGPLS 285 (656)
T ss_pred ------------------------------hhhccCcccccCchhhhHHHHHHHHHhhcccc--cchhhHhhhccccceE
Confidence 38999999999999999999999999999999 9999999999999999
Q ss_pred eEEEEEeCCCCCcchhhhhhcccccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHH
Q 007926 395 FKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKK 474 (584)
Q Consensus 395 f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk 474 (584)
|++|||||.++|+++|+. .+.++||+||||||||+|+|.+++|+||+||+|||||+|||||+|||+||++++|++||+
T Consensus 286 frail~vP~rap~~lF~~--~kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk 363 (656)
T KOG0019|consen 286 IRSIFYIPKRAPNSMFDM--RKKKNGIKLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRK 363 (656)
T ss_pred EEEEEeccccCcchhhhh--hhccCceEEEEEEEecCchhHHHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHH
Confidence 999999999999999987 466799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccchhHHHHHHHHhchhceeeeccChhhHHH-HhccceeeeccCC
Q 007926 475 KLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNR-LAKLLRFERYLFY 553 (584)
Q Consensus 475 ~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~-la~Llrf~ss~~~ 553 (584)
.|++|+++||.++| + ++++|++||++||.+||+||++|.+|+.+ +|+||||+||++.
T Consensus 364 ~l~~k~l~~~~e~a-~---------------------d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~ 421 (656)
T KOG0019|consen 364 VLPQKILEMFQDLA-K---------------------DAEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSG 421 (656)
T ss_pred HHHHHHHHHHHHHh-h---------------------hHHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccc
Confidence 99999999999999 5 67899999999999999999999999999 9999999999999
Q ss_pred Cccceee------------ehhhhc------CCchhHhhhhhcCcccc
Q 007926 554 SLNLSYE------------YFYFSR------ISLPFVSASFSHGVCTL 583 (584)
Q Consensus 554 ~~~~s~~------------~~y~~~------~~~p~~~~~~~~g~~~l 583 (584)
++.+|++ +||+++ .++|++++++++|++||
T Consensus 422 ~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evl 469 (656)
T KOG0019|consen 422 EGATSLDDYVERMREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVL 469 (656)
T ss_pred cccccHHHHHHhhcccccceEEeccchhhhhhcchHHHHHHhcCceeE
Confidence 9999995 577774 46999999999999998
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=9e-104 Score=881.86 Aligned_cols=422 Identities=49% Similarity=0.837 Sum_probs=391.1
Q ss_pred cccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEE
Q 007926 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (584)
Q Consensus 76 ~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~D 155 (584)
..|+++||+|+++||+||+++||+||++|||||||||+|||+|+|+.+++++.+. ....++.|+|.++.++++|+|+|
T Consensus 2 ~~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~--~~~~~~~I~I~~d~~~~~i~I~D 79 (613)
T PRK05218 2 AMETGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALY--EGDGDLKIRISFDKEARTLTISD 79 (613)
T ss_pred CcceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCcccc--CCCCCcEEEEEEcCCCCeEEEEE
Confidence 3689999999999999999999999999999999999999999999999998876 45667899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccchhHHHHhhhhc--CCCCccccccceeeEEEeecCEEEEEEeeCC--CceeEEEecCCCc
Q 007926 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND--DKQYVWESKADGA 231 (584)
Q Consensus 156 NGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~--~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~--~~~~~W~s~~~~~ 231 (584)
||+|||++||.++|++||+||+++|.++++.. .+.++||||||||||+||||++|+|.|++.+ ..++.|.+.+++.
T Consensus 80 nG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~ 159 (613)
T PRK05218 80 NGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGE 159 (613)
T ss_pred CCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCce
Confidence 99999999999999999999999999988532 3578999999999999999999999999865 4689999999999
Q ss_pred eEEEeCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhhhhh
Q 007926 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (584)
Q Consensus 232 f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (584)
|++.+.+ ...+||+|+|+|++++.+|++.++|+++|++||+|+++||++++.
T Consensus 160 ~~i~~~~---~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~------------------------- 211 (613)
T PRK05218 160 YTIEEIE---KEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKE------------------------- 211 (613)
T ss_pred eEEeECC---CCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEecc-------------------------
Confidence 9999863 347999999999999999999999999999999999999999531
Q ss_pred hhccccCCCcccccccccCCCcccceeccceeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeeccc
Q 007926 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (584)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg 391 (584)
+|+++|+++|+|+++++++++++|..||+.+++++ .+||+++||+++|
T Consensus 212 ------------------------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~--~~pl~~i~~~~e~ 259 (613)
T PRK05218 212 ------------------------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDF--DDPLFWIHNNVEG 259 (613)
T ss_pred ------------------------------cceeecCCccceecCCccccHHHHHHHhhhhcccc--cCCcEEEEcccCC
Confidence 26789999999999999999999999999999998 8999999999999
Q ss_pred ceeeEEEEEeCCCCCcchhhhhhcccccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHH
Q 007926 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (584)
Q Consensus 392 ~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~ 471 (584)
++.|+|+||||..+|+++|++ ...++++||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++
T Consensus 260 ~~~~~gll~iP~~~~~~~~~~---~~~~~~~lyvn~v~I~d~~~~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~ 336 (613)
T PRK05218 260 PFEYTGLLYIPKKAPFDLFNR---DRKGGLKLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKK 336 (613)
T ss_pred ceEEEEEEEeCCCCccchhhh---cccccEEEEECcEEeeCchhhhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHH
Confidence 999999999999999998864 45789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeecc
Q 007926 472 IKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYL 551 (584)
Q Consensus 472 Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~ 551 (584)
||+.|++|+++||+++|++ ++++|++||++||.+||+||++|..||++|++||||+||+
T Consensus 337 i~~~l~~kv~~~l~~la~~---------------------d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~ 395 (613)
T PRK05218 337 IRKAITKKVLDELEKLAKN---------------------DREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH 395 (613)
T ss_pred HHHHHHHHHHHHHHHHHhh---------------------CHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC
Confidence 9999999999999999998 8999999999999999999999999999999999999997
Q ss_pred CCCccceee------------ehhhhcC------CchhHhhhhhcCccccC
Q 007926 552 FYSLNLSYE------------YFYFSRI------SLPFVSASFSHGVCTLL 584 (584)
Q Consensus 552 ~~~~~~s~~------------~~y~~~~------~~p~~~~~~~~g~~~ll 584 (584)
..+.+|++ +||+++. ++|+++.+.++|+|||+
T Consensus 396 -~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~~e~~~~~g~eVl~ 445 (613)
T PRK05218 396 -EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSPHLELFKKKGIEVLL 445 (613)
T ss_pred -CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhChHHHHHHhcCceEEE
Confidence 45566663 4676643 59999999999999985
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=9.3e-101 Score=852.96 Aligned_cols=399 Identities=25% Similarity=0.410 Sum_probs=357.0
Q ss_pred ceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEE-cCCccEEEEEECC
Q 007926 79 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL-DKEKKILSIRDRG 157 (584)
Q Consensus 79 ~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~-d~~~~~L~I~DNG 157 (584)
.++||+|+++||++|+++||++|++|||||||||+|||+++|+.. + ..+..|+|.+ +.++++|+|+|||
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~---~-------~~~~~I~I~~~d~~~~~l~I~DnG 71 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD---P-------TAPGRIRIELTDAGGGTLIVEDNG 71 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC---C-------CCCceEEEEEccCCCcEEEEEeCC
Confidence 478999999999999999999999999999999999999987642 2 2345777777 8888999999999
Q ss_pred CCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeC-CCceeEEEecCCCceEEEe
Q 007926 158 IGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISE 236 (584)
Q Consensus 158 iGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~-~~~~~~W~s~~~~~f~I~~ 236 (584)
+|||++++.++|++||+||++.|. +. ..+.++||||||||||||||||+|+|.|++. ++.++.|++.++|.|+|..
T Consensus 72 iGmt~eel~~~l~~ig~S~k~~~~--~~-~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~ 148 (601)
T PRK14083 72 IGLTEEEVHEFLATIGRSSKRDEN--LG-FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRK 148 (601)
T ss_pred CCCCHHHHHHHHhhhccchhhhhh--hc-ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEe
Confidence 999999999999999999998764 21 2356799999999999999999999999997 4679999999999999998
Q ss_pred CCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhhhhhhhccc
Q 007926 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKS 316 (584)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (584)
.+ .+...+||+|+|+++++..+|++.++|++++++||.|++|||+++++
T Consensus 149 ~~-~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~------------------------------ 197 (601)
T PRK14083 149 LE-TERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE------------------------------ 197 (601)
T ss_pred CC-CCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc------------------------------
Confidence 53 34568999999999999999999999999999999999999999631
Q ss_pred cCCCcccccccccCCCcccceeccceeEEecccCcccccCCCCCC--HHHHHHHHHHhhcCCCCCCCceeeeeeccccee
Q 007926 317 ESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVT--EEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVE 394 (584)
Q Consensus 317 ~~~~~~~~~~~~~~~~~k~v~~~~~~we~iN~~~piW~r~~~~vt--~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~ 394 (584)
.++||+++|||+|+|+++| ++||.+|||.+++ ++||+|+||++||.+.
T Consensus 198 --------------------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~----~~Pl~~ih~~~e~~~~ 247 (601)
T PRK14083 198 --------------------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG----FTPLDVIPLDVPSGGL 247 (601)
T ss_pred --------------------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC----CCchheeeecccchhh
Confidence 1479999999999999999 9999999999887 5799999999999986
Q ss_pred eEEEEE-eCCCCCcchhhhhhcccccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHH
Q 007926 395 FKAVLF-VPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIK 473 (584)
Q Consensus 395 f~~llf-iP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Ir 473 (584)
+++|| ||..+|++ .+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||
T Consensus 248 -~~~Ly~iP~~~~~~--------~~~~v~LY~~rVfI~d~~~~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir 318 (601)
T PRK14083 248 -EGVAYVLPYAVSPA--------ARRKHRVYLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVR 318 (601)
T ss_pred -eEEEEecCCCCCcc--------ccCceEEEeeeeEeecchhhhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHH
Confidence 67887 68888873 257999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCC
Q 007926 474 KKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFY 553 (584)
Q Consensus 474 k~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~ 553 (584)
+.|++|++++|+++|++ +|++|++||++||.+||+|+++|.+||++|++||||+||++.
T Consensus 319 ~~i~kki~~~L~~la~~---------------------d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~~~ 377 (601)
T PRK14083 319 EELGEAIRKWLIGLATT---------------------DPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTDGR 377 (601)
T ss_pred HHHHHHHHHHHHHHHhh---------------------CHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCCCC
Confidence 99999999999999999 999999999999999999999999999999999999999853
Q ss_pred Ccccee-e-------ehhhhcC-C-chhHhhhhhcCccccC
Q 007926 554 SLNLSY-E-------YFYFSRI-S-LPFVSASFSHGVCTLL 584 (584)
Q Consensus 554 ~~~~s~-~-------~~y~~~~-~-~p~~~~~~~~g~~~ll 584 (584)
+|+ + +||+++. + .-..+.+.++|+|||+
T Consensus 378 ---~sL~eY~~r~~~IyY~~~~~~~~~~~~~~~~kg~eVl~ 415 (601)
T PRK14083 378 ---MTLAEIRRRHGVIRYTSSVDEFRQLAPIARAQGMGVIN 415 (601)
T ss_pred ---cCHHHHHHhCCeEEEEcCHHHHHHHHHHHHHCCCeEEE
Confidence 455 3 4676663 3 3344788999999985
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=1.5e-81 Score=691.74 Aligned_cols=299 Identities=55% Similarity=0.955 Sum_probs=240.6
Q ss_pred cccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhhhhhhhccccCCCcc-cc-cccccCCCcccc
Q 007926 259 EYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSESESED-ED-EDSEKKPKTKTV 336 (584)
Q Consensus 259 e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~k~v 336 (584)
+||+.++|++||++||+||+|||+|+.++++++++++++++.++++.+ +++..++++.+++++ .+ +.++++|++|++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~-~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~ 79 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKE-EEEKKEEEEEKVEEEDEEEEKEEKKPKTKKV 79 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT--TT--------SSEEEE----S-TTEEEEEC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhh-hcccccccccccccccccccccccccccccc
Confidence 599999999999999999999999999998887776643221111100 000001111122111 11 122456788999
Q ss_pred eeccceeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceeeEEEEEeCCCCCcchhhhhhcc
Q 007926 337 KETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNT 416 (584)
Q Consensus 337 ~~~~~~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f~~llfiP~~~p~~~~~~~~~~ 416 (584)
++++|+|++||+++|||+|+|++||++||.+|||+++++| ++||+|+||++||+++|+||||||+++|+++|+.+ .
T Consensus 80 ~~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~--~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~--~ 155 (531)
T PF00183_consen 80 KETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDY--DDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFEND--K 155 (531)
T ss_dssp CEEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTS--S-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSS--T
T ss_pred ccceeecccccccCcccccchhccchHHHHHHHHHhhhcc--cCchhheeccccccceeeEEEEeCCCCchhhhhhh--h
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999999999763 4
Q ss_pred cccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007926 417 NKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEST 496 (584)
Q Consensus 417 ~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~lv~k~l~~l~~la~~~~~~~~ 496 (584)
..++|+||||||||+|+|.+|||+||+||||||||+|||||||||+||+|++|++||+.|+||++++|++|++
T Consensus 156 ~~~~ikLY~rrVfI~d~~~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~~------- 228 (531)
T PF00183_consen 156 KKNGIKLYVRRVFITDNFEELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLAK------- 228 (531)
T ss_dssp T--SEEEEETTEEEESSCGGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred ccccceeeeecccccchhhcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCcccccccCCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCCCccceee------------ehhh
Q 007926 497 GKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFYSLNLSYE------------YFYF 564 (584)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~~~~~s~~------------~~y~ 564 (584)
++++|.+||++||.+||+||++|..||++|++||||+||++++.++|++ |||+
T Consensus 229 ---------------d~e~y~~f~~~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~ 293 (531)
T PF00183_consen 229 ---------------DREKYEKFWKEFGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYL 293 (531)
T ss_dssp ---------------SHHHHHHHHHHHHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEE
T ss_pred ---------------hHHHHHHHHHHHhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEE
Confidence 4579999999999999999999999999999999999999888888985 5777
Q ss_pred hcC------CchhHhhhhhcCccccC
Q 007926 565 SRI------SLPFVSASFSHGVCTLL 584 (584)
Q Consensus 565 ~~~------~~p~~~~~~~~g~~~ll 584 (584)
++. ++|++++|++||+|||+
T Consensus 294 ~g~s~~~~~~SP~lE~~k~kG~EVL~ 319 (531)
T PF00183_consen 294 TGESREEAEQSPYLEAFKKKGYEVLF 319 (531)
T ss_dssp ESSSHHHHHTSGGGHHHHHCT--EEE
T ss_pred ecchHHHHhhccchhhHHhhCceEEE
Confidence 754 59999999999999995
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.68 E-value=4.3e-17 Score=150.69 Aligned_cols=101 Identities=39% Similarity=0.571 Sum_probs=76.6
Q ss_pred CCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEc-CCccEEEEEECCCCCCHHHHHHHHHHHhccc
Q 007926 98 YSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTIAKSG 176 (584)
Q Consensus 98 Ys~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d-~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg 176 (584)
|+. ..+|+|||+||+||.+. .+.|.|..+ .....|+|.|||.||+.++|.. +++++.|+
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~------------------~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~ 60 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGAT------------------NIKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSS 60 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHH------------------HEEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTH
T ss_pred CcH-HHHHHHHHHHHHHccCC------------------EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCC
Confidence 666 89999999999999873 145666655 3568999999999999999998 77899887
Q ss_pred hhHHHHhhhhcCCCCccccccce-eeEEEeecCEEEEEEeeCCC-ceeEEE
Q 007926 177 TSAFVEKMQTSGDLNLIGQFGVG-FYSVYLVADYVEVISKHNDD-KQYVWE 225 (584)
Q Consensus 177 ~~~f~~~l~~~~~~~~IGqFGIG-F~S~FmVadkV~V~Sk~~~~-~~~~W~ 225 (584)
+... .....+|+||+| ++|+|+++++++|+|+..+. ..+.|.
T Consensus 61 k~~~-------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~ 104 (137)
T PF13589_consen 61 KKSE-------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTID 104 (137)
T ss_dssp HHHH-------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEE
T ss_pred CCch-------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEE
Confidence 6521 124579999999 88999999999999999753 344443
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=1e-12 Score=137.15 Aligned_cols=161 Identities=20% Similarity=0.288 Sum_probs=105.3
Q ss_pred hcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCcc-EEEEEECCCCCCHHHHHHHHHHHh
Q 007926 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK-ILSIRDRGIGMTKEDLIKNLGTIA 173 (584)
Q Consensus 95 ~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~-~L~I~DNGiGMT~eeL~~~LgtIa 173 (584)
.....++..+|+|||+||.||.+ . .|.|.+..++. .|+|.|||.||+.+++...+ .-.
T Consensus 17 ~~~i~~~~~~l~eLi~Na~dA~a------------------~--~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~-~~~ 75 (312)
T TIGR00585 17 GEVIERPASVVKELVENSLDAGA------------------T--RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLAC-ERH 75 (312)
T ss_pred cCchhhHHHHHHHHHHHHHHCCC------------------C--EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHh-hCC
Confidence 45567889999999999999853 1 34444433333 59999999999999998644 333
Q ss_pred ccchh-HHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEee-C-CCceeEEEecCCCceEEEeCCCCCCCCCCcEEE
Q 007926 174 KSGTS-AFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKH-N-DDKQYVWESKADGAFAISEDTWNEPLGRGTEIR 250 (584)
Q Consensus 174 ~Sg~~-~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~-~-~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~ 250 (584)
.+++. .+. . .......|.+|.|++|...+| +++|+|+. . ++.++.|...|. .+... ......+||+|+
T Consensus 76 ~tsk~~~~~-~---~~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~---~~~~~-~~~~~~~GTtV~ 146 (312)
T TIGR00585 76 ATSKIQSFE-D---LERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG---MIEEI-KPAPRPVGTTVE 146 (312)
T ss_pred CcCCCCChh-H---hhcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC---cCccc-ccccCCCccEEE
Confidence 33332 111 1 123456899999999999998 89999997 3 456788874433 22221 112447999999
Q ss_pred EE-ec---cccccccC-----hHHHHHHHHHHh---CCCCcceEeee
Q 007926 251 LH-LR---DEAGEYLE-----ESKLKELVKKYS---EFINFPIYIWA 285 (584)
Q Consensus 251 L~-Lk---~d~~e~l~-----~~~lk~lvkkys---~fi~~PI~l~~ 285 (584)
+. |- +.-+.++. ...++.++.+|+ ..+.|.++.++
T Consensus 147 v~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~ 193 (312)
T TIGR00585 147 VRDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHDG 193 (312)
T ss_pred EchhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 96 11 11111222 357889999998 45567776653
No 11
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.22 E-value=3.9e-11 Score=129.00 Aligned_cols=135 Identities=24% Similarity=0.353 Sum_probs=92.9
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEc-CCccEEEEEECCCCCCHHHHHHHHHHHhccchhHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d-~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f 180 (584)
...+||||.||.|||+... ++ |.+.|+|..- .+-.+++|.|||+|++.+.+.+.||++-.+++-.
T Consensus 38 ~~tv~ElV~NSLDA~eeaG--------IL-----PdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh- 103 (538)
T COG1389 38 TTTVHELVTNSLDACEEAG--------IL-----PDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFH- 103 (538)
T ss_pred HHHHHHHHhcchhhHHhcC--------CC-----CceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhh-
Confidence 4678999999999998432 22 5566666543 4556899999999999999999999998876532
Q ss_pred HHhhhhcCCCCccccccceeeEEEe-----ecCEEEEEEeeCC-CceeEEEe--cCC-CceEEEeC--CCCCCCCCCcEE
Q 007926 181 VEKMQTSGDLNLIGQFGVGFYSVYL-----VADYVEVISKHND-DKQYVWES--KAD-GAFAISED--TWNEPLGRGTEI 249 (584)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~Fm-----VadkV~V~Sk~~~-~~~~~W~s--~~~-~~f~I~~~--~~~~~~~~GT~I 249 (584)
. ..+--||+|||.-+|.| -+.-|.|.|+..+ ...+.++- +.+ ++=.|.+. ......+|||+|
T Consensus 104 -~------~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~V 176 (538)
T COG1389 104 -R------NIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRV 176 (538)
T ss_pred -h------hhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEE
Confidence 1 22345999999755544 4688999999865 44554432 111 11122211 112235799999
Q ss_pred EEEecccc
Q 007926 250 RLHLRDEA 257 (584)
Q Consensus 250 ~L~Lk~d~ 257 (584)
.|+++..+
T Consensus 177 el~~~~~~ 184 (538)
T COG1389 177 ELELKGVW 184 (538)
T ss_pred EEEecccc
Confidence 99999875
No 12
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.13 E-value=3.2e-10 Score=126.17 Aligned_cols=152 Identities=24% Similarity=0.325 Sum_probs=98.5
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEc---CCccEEEEEECCCCCCHHHHHHHHHHHhccchh
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD---KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d---~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~ 178 (584)
...|+|||+||.||++.. +..+.+.|.+... .+...|+|.|||+||+.+++...|+....+++
T Consensus 38 ~qVLkNLIeNAIDa~~~~-------------gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK- 103 (535)
T PRK04184 38 YTTVKELVDNSLDACEEA-------------GILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSK- 103 (535)
T ss_pred HHHHHHHHHHHHHHhhhc-------------CCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccc-
Confidence 457899999999998621 1113455555542 23357999999999999999988876543322
Q ss_pred HHHHhhhhcCCCCccccccceeeEEEeecC-----EEEEEEeeCCCc-eeEEEec-----CCCceEEEeCCCCCCCCCCc
Q 007926 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWESK-----ADGAFAISEDTWNEPLGRGT 247 (584)
Q Consensus 179 ~f~~~l~~~~~~~~IGqFGIGF~S~FmVad-----kV~V~Sk~~~~~-~~~W~s~-----~~~~f~I~~~~~~~~~~~GT 247 (584)
|. ......|++|+|+.+|.+++. .+.|.|+..++. ++.++-. ..|. .+.........++||
T Consensus 104 -~~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~-i~~~~~~~~~~~~GT 175 (535)
T PRK04184 104 -FH------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPI-ILEREEVDWDRWHGT 175 (535)
T ss_pred -cc------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCe-eccccccCCCCCCCE
Confidence 10 112356999999999887764 589999886544 5544432 1121 111111112357899
Q ss_pred EEEEEeccccccccChHHHHHHHHHHhCCC
Q 007926 248 EIRLHLRDEAGEYLEESKLKELVKKYSEFI 277 (584)
Q Consensus 248 ~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi 277 (584)
+|.+.+...+. ....++.++|++++-.-
T Consensus 176 ~V~V~l~~~~~--~~~~~I~e~i~r~Al~n 203 (535)
T PRK04184 176 RVELEIEGDWY--RAKQRIYEYLKRTAIVN 203 (535)
T ss_pred EEEEEECCcCh--hhHHHHHHHHHHHHHhC
Confidence 99999887653 22577888888876543
No 13
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.13 E-value=6.6e-11 Score=134.59 Aligned_cols=153 Identities=21% Similarity=0.294 Sum_probs=103.9
Q ss_pred CCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCcc-EEEEEECCCCCCHHHHHHHHHHHhccc
Q 007926 98 YSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK-ILSIRDRGIGMTKEDLIKNLGTIAKSG 176 (584)
Q Consensus 98 Ys~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~-~L~I~DNGiGMT~eeL~~~LgtIa~Sg 176 (584)
-..|..++||||.||.||.+ .+|+|.++.++. .|.|+|||+||+++||.-.+..-|.|-
T Consensus 21 IerPaSVVKELVENSlDAGA--------------------t~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 21 IERPASVVKELVENSLDAGA--------------------TRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred eecHHHHHHHHHhcccccCC--------------------CEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 34789999999999999974 267777777665 499999999999999999888888773
Q ss_pred hhHHHHhhhhcCCCCcccccccee--eEEEeecCEEEEEEeeCC-CceeEEEecCCCce-EEEeCCCCCCCCCCcEEEE-
Q 007926 177 TSAFVEKMQTSGDLNLIGQFGVGF--YSVYLVADYVEVISKHND-DKQYVWESKADGAF-AISEDTWNEPLGRGTEIRL- 251 (584)
Q Consensus 177 ~~~f~~~l~~~~~~~~IGqFGIGF--~S~FmVadkV~V~Sk~~~-~~~~~W~s~~~~~f-~I~~~~~~~~~~~GT~I~L- 251 (584)
-+. ..|..-|-.||.-- +++..-..+++|+|+..+ ..++.|...|++.- ++.+. ....||+|.+
T Consensus 81 I~~-------~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~----a~~~GTtVeV~ 149 (638)
T COG0323 81 IAS-------LEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPA----AHPVGTTVEVR 149 (638)
T ss_pred CCc-------hhHHHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccccccCC----CCCCCCEEEeh
Confidence 222 12322344444332 344444578999999664 56777777665432 33332 3355999999
Q ss_pred -----------EeccccccccChHHHHHHHHHHhCCC-CcceEee
Q 007926 252 -----------HLRDEAGEYLEESKLKELVKKYSEFI-NFPIYIW 284 (584)
Q Consensus 252 -----------~Lk~d~~e~l~~~~lk~lvkkys~fi-~~PI~l~ 284 (584)
++|.+..+| .++.++|++|+-.- .+-..|+
T Consensus 150 dLF~NtPaRrKflks~~~E~---~~i~~vv~r~ALahp~I~F~l~ 191 (638)
T COG0323 150 DLFYNTPARRKFLKSEKTEF---GHITELINRYALAHPDISFSLS 191 (638)
T ss_pred HhhccChHHHHhhcccHHHH---HHHHHHHHHHHhcCCCeEEEEE
Confidence 455555544 77899999997542 3333443
No 14
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.03 E-value=9e-10 Score=125.19 Aligned_cols=154 Identities=22% Similarity=0.347 Sum_probs=98.2
Q ss_pred hcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC-CccEEEEEECCCCCCHHHHHHHHHHHh
Q 007926 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIGMTKEDLIKNLGTIA 173 (584)
Q Consensus 95 ~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~-~~~~L~I~DNGiGMT~eeL~~~LgtIa 173 (584)
...-.++...++|||+||.||++ . .|.|.+.. +...|+|+|||.||+.+++...+..-+
T Consensus 17 gevI~~~~svvkElveNsiDAga------------------t--~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~ 76 (617)
T PRK00095 17 GEVVERPASVVKELVENALDAGA------------------T--RIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHA 76 (617)
T ss_pred cCcccCHHHHHHHHHHHHHhCCC------------------C--EEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccC
Confidence 44556899999999999999863 2 34554433 335899999999999999997665444
Q ss_pred ccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCC-CceeEEEecCCCceEEEeCCCCCCCCCCcEEEEE
Q 007926 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLH 252 (584)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~-~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~ 252 (584)
.|--..+ +.+ ....-.|..|.|+.|.-.|+ +++|+|+..+ +.+|.+...++..-.+.+ ....+||+|++.
T Consensus 77 tsKi~~~-~dl---~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~----~~~~~GT~V~v~ 147 (617)
T PRK00095 77 TSKIASL-DDL---EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKP----AAHPVGTTIEVR 147 (617)
T ss_pred CCCCCCh-hHh---hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceec----ccCCCCCEEEec
Confidence 3321111 111 12345799999988777776 8999999864 346666554432212222 124689999994
Q ss_pred -e---cccccccc-----ChHHHHHHHHHHhCCC
Q 007926 253 -L---RDEAGEYL-----EESKLKELVKKYSEFI 277 (584)
Q Consensus 253 -L---k~d~~e~l-----~~~~lk~lvkkys~fi 277 (584)
| -+.-+.|+ +...|++++++|+-.-
T Consensus 148 ~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~~ 181 (617)
T PRK00095 148 DLFFNTPARRKFLKSEKTELGHIDDVVNRLALAH 181 (617)
T ss_pred hhhccCcHHHHhccCcHHHHHHHHHHHHHHhhcC
Confidence 1 11112232 2346888888887653
No 15
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.01 E-value=2e-09 Score=118.76 Aligned_cols=159 Identities=22% Similarity=0.342 Sum_probs=98.8
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCC-ccEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~-~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
..++|||.||.||++.. +..+.+.|.+..... ...|+|.|||.||+.+++...|+...++++-.
T Consensus 31 ~VlkELVeNAIDA~~~~-------------g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~-- 95 (488)
T TIGR01052 31 TVIHELVTNSLDACEEA-------------GILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFH-- 95 (488)
T ss_pred HHHHHHHHHHHHHhhcc-------------CCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCccc--
Confidence 57899999999998621 112334455443222 23799999999999999998887755443310
Q ss_pred HhhhhcCCCCccccccceeeEEEeecC-----EEEEEEeeCCCc-eeEEEec-----CCCceEEEeCCCCCCCCCCcEEE
Q 007926 182 EKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWESK-----ADGAFAISEDTWNEPLGRGTEIR 250 (584)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~FmVad-----kV~V~Sk~~~~~-~~~W~s~-----~~~~f~I~~~~~~~~~~~GT~I~ 250 (584)
......|++|+|+.++.+++. .++|.|+..+.. ++..+.. ..|. .+...+.+...++||+|.
T Consensus 96 ------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~-i~~~~~~~~~~~~GT~V~ 168 (488)
T TIGR01052 96 ------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGE-IVEKGEWNKPGWRGTRIE 168 (488)
T ss_pred ------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCe-ecceeecCCCCCCceEEE
Confidence 123445999999999888775 499999986543 4444432 1232 112212222225899999
Q ss_pred EEeccccccccChHHHHHHHHHHhCCC-CcceEee
Q 007926 251 LHLRDEAGEYLEESKLKELVKKYSEFI-NFPIYIW 284 (584)
Q Consensus 251 L~Lk~d~~e~l~~~~lk~lvkkys~fi-~~PI~l~ 284 (584)
+........+ ...++.+++++++-.- .+-|.+.
T Consensus 169 v~f~~~~~r~-~k~~i~e~l~~~Al~nP~~~i~l~ 202 (488)
T TIGR01052 169 LEFKGVSYRR-SKQGVYEYLRRTAVANPHAKIVLV 202 (488)
T ss_pred EEECCceeec-cHHHHHHHHHHHHhhCCCeEEEEE
Confidence 9865433211 3468888888876543 3334443
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.85 E-value=8.9e-09 Score=117.68 Aligned_cols=148 Identities=22% Similarity=0.299 Sum_probs=95.2
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~ 182 (584)
..|+|||.||+||+.. . +..+.+.|.|......-.|+|.|||.||+++++...|...+++++ |.
T Consensus 49 tVLkNLIeNALDAs~~--------~-----gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f~- 112 (795)
T PRK14868 49 TAVKEAVDNALDATEE--------A-----GILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--FH- 112 (795)
T ss_pred HHHHHHHHHHHHhCcc--------c-----CCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--cc-
Confidence 5788999999999751 0 111334555543333347999999999999999998887765433 11
Q ss_pred hhhhcCCCCccccccceeeEEEeecC-----EEEEEEeeCCC-ceeEEEe--cCCC-ceEE--EeCCCCCCCCCCcEEEE
Q 007926 183 KMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDD-KQYVWES--KADG-AFAI--SEDTWNEPLGRGTEIRL 251 (584)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~FmVad-----kV~V~Sk~~~~-~~~~W~s--~~~~-~f~I--~~~~~~~~~~~GT~I~L 251 (584)
....-.|+.|+|+-++.+++. .+.|+|+..+. .++.|.- +++. .-.| ... .....++||+|.+
T Consensus 113 -----~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~-~~~~~~~GT~IeV 186 (795)
T PRK14868 113 -----AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEET-TTWDRPHGTRIEL 186 (795)
T ss_pred -----ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceeccee-cccCCCCceEEEE
Confidence 111335899999988887764 59999987643 4654443 3321 1111 111 1123579999999
Q ss_pred EeccccccccChHHHHHHHHHHhC
Q 007926 252 HLRDEAGEYLEESKLKELVKKYSE 275 (584)
Q Consensus 252 ~Lk~d~~e~l~~~~lk~lvkkys~ 275 (584)
.|.-. |....++.++|++++-
T Consensus 187 ~Lf~N---~pAR~kI~eyl~r~Al 207 (795)
T PRK14868 187 EMEAN---MRARQQLHDYIKHTAV 207 (795)
T ss_pred EEEcc---CchhhhHHHHHHHHHh
Confidence 98653 4445668888877654
No 17
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.42 E-value=7.6e-07 Score=101.51 Aligned_cols=150 Identities=19% Similarity=0.260 Sum_probs=87.0
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC-CccEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~-~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
..++|||.||.||+... +..+.+.|.+.... ..-.|+|.|||.||+.+++...|+..-. |++ |.
T Consensus 39 ~VVkELVeNAIDA~~~~-------------g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~a-tSK-~~ 103 (659)
T PRK14867 39 TIIHELVTNSLDACEEA-------------EILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLA-GSK-MH 103 (659)
T ss_pred HHHHHHHHHHHHHhhcc-------------CCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccc-cCc-cc
Confidence 57899999999998621 11233455554322 2235999999999999999988776432 221 10
Q ss_pred HhhhhcCCCCccccccceeeEEEeecC-----EEEEEEeeCCCcee--EEEec---CCCceEEEeCCCCCCCCCCcEEEE
Q 007926 182 EKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDKQY--VWESK---ADGAFAISEDTWNEPLGRGTEIRL 251 (584)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~FmVad-----kV~V~Sk~~~~~~~--~W~s~---~~~~f~I~~~~~~~~~~~GT~I~L 251 (584)
.-...-|+.|+|+.++-+++. .+.|.|+..++..+ .|..+ .+|...-...+ ...++||+|.+
T Consensus 104 ------~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~~--~~~~~GT~Ie~ 175 (659)
T PRK14867 104 ------RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKVR--EGFWRGTRVEG 175 (659)
T ss_pred ------ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeecccccC--CCCCCCcEEEE
Confidence 012345889999977765554 46888887544432 22221 12222111111 23479999997
Q ss_pred EeccccccccChHHHHHHHHHHhCC
Q 007926 252 HLRDEAGEYLEESKLKELVKKYSEF 276 (584)
Q Consensus 252 ~Lk~d~~e~l~~~~lk~lvkkys~f 276 (584)
.+++-...-. +..+.++|++++--
T Consensus 176 ~V~dLFynR~-E~~i~e~l~r~ALa 199 (659)
T PRK14867 176 EFKEVTYNRR-EQGPFEYLRRISLS 199 (659)
T ss_pred EEeeceechh-hHHHHHHHHHHHHh
Confidence 6654211111 22377777777643
No 18
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.37 E-value=8.6e-07 Score=101.33 Aligned_cols=162 Identities=20% Similarity=0.232 Sum_probs=99.1
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH--------HHHHH
Q 007926 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTI 172 (584)
Q Consensus 101 ~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~--------~LgtI 172 (584)
+...++|||-||.|++.. +.. -.|.|.++.+ +.|+|.|||.||+.+.+.. .|+++
T Consensus 38 l~~lv~EivdNaiDe~~a--------------g~a--~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~l 100 (631)
T PRK05559 38 LHHLVQEVIDNSVDEALA--------------GHG--KRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKL 100 (631)
T ss_pred hhhhhhhhhccccchhhc--------------CCC--CEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeec
Confidence 456889999999999631 112 2566666554 4899999999999988876 45553
Q ss_pred hccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCc-eeEEEecCCCceEEEeCCCCCCCCCCcEEEE
Q 007926 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (584)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L 251 (584)
-.+|+ |-. ......-|..|+|.-++=.++.+++|.|+..+.. ...|+ .|...-.+..........+||+|+.
T Consensus 101 hagsK--f~~----~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~~~~~~f~-~G~~~~~l~~~~~~~~~~~GT~V~f 173 (631)
T PRK05559 101 HAGGK--FSN----KAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGKVYRQRFE-GGDPVGPLEVVGTAGKRKTGTRVRF 173 (631)
T ss_pred cccCc--cCC----ccccccCcccccchhhhhhheeeEEEEEEeCCeEEEEEEE-CCcCccCccccccccCCCCCcEEEE
Confidence 33332 110 1112347999999999999999999999975432 23443 2211111111110111468999999
Q ss_pred Eecccc--ccccChHHHHHHHHHHhCCC-CcceEeeec
Q 007926 252 HLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWAS 286 (584)
Q Consensus 252 ~Lk~d~--~e~l~~~~lk~lvkkys~fi-~~PI~l~~~ 286 (584)
.....- ..-++...|.+.++.++-.. ..-|.+++.
T Consensus 174 ~PD~~iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~ 211 (631)
T PRK05559 174 WPDPKIFDSPKFSPERLKERLRSKAFLLPGLTITLNDE 211 (631)
T ss_pred EECHHHcCCcccCHHHHHHHHHHHHhhCCCeEEEEEeC
Confidence 653321 11235677888888876433 345555544
No 19
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.21 E-value=2.1e-06 Score=98.07 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=97.4
Q ss_pred chhHHHHhhhcHHH-HHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHH--------HHHHHHH
Q 007926 101 KDIFLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGT 171 (584)
Q Consensus 101 ~~vfLRELIqNA~D-A~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~ee--------L~~~Lgt 171 (584)
+...+.|||-||+| |++ +.. -.|.|.++.+ +.|+|.|||.||+.++ +.-.|++
T Consensus 31 ~~~lv~ElvdNsiDE~~a---------------g~a--~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~ 92 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALA---------------GFA--SIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTT 92 (625)
T ss_pred cceeehhhhhcccchhhc---------------CCC--CEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhc
Confidence 46689999999999 221 111 2566666655 7899999999999988 5544534
Q ss_pred HhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCc-eEEEeCCCCCCCCCCcEEE
Q 007926 172 IAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEIR 250 (584)
Q Consensus 172 Ia~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I~ 250 (584)
.-.+|+ | ....-.-..|.-|+|.-|+=.++.+++|.|+..+.. |.++...+.. -.+..........+||+|+
T Consensus 93 lhagsK--~----~~~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~ 165 (625)
T TIGR01055 93 LHAGGK--F----SNKNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSVH 165 (625)
T ss_pred ccccCC--C----CCCcceecCCCcchhHHHHHHhcCeEEEEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEEE
Confidence 322222 1 111112357899999999999999999999976543 4443333211 0111110011235899999
Q ss_pred EEecccc--ccccChHHHHHHHHHHhCCC-CcceEeeec
Q 007926 251 LHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWAS 286 (584)
Q Consensus 251 L~Lk~d~--~e~l~~~~lk~lvkkys~fi-~~PI~l~~~ 286 (584)
....... ..-.+..+|.++++.++-.. ..-|.|+++
T Consensus 166 F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~de 204 (625)
T TIGR01055 166 FTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDE 204 (625)
T ss_pred EEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeec
Confidence 8533321 01124567888888876543 456666654
No 20
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.20 E-value=1.7e-06 Score=98.30 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=91.7
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHH-------HHHHHHhccc
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKSG 176 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~-------~~LgtIa~Sg 176 (584)
.++|||.||+||... + ..-.|.|.++.++ .|+|.|||.||+.+... +.+.++..+|
T Consensus 5 ~v~ElvdNAiD~~~~--------------g--~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag 67 (594)
T smart00433 5 LVDEIVDNAADEALA--------------G--YMDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAG 67 (594)
T ss_pred EEeeehhcccchhcc--------------C--CCCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhccc
Confidence 578999999999731 1 1235666666554 99999999999953321 1122222232
Q ss_pred hhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEeC-CCCCCCCCCcEEEEEecc
Q 007926 177 TSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISED-TWNEPLGRGTEIRLHLRD 255 (584)
Q Consensus 177 ~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~-~~~~~~~~GT~I~L~Lk~ 255 (584)
.+ | ......-.-|..|+|..|+=.++.+++|.|+..+. .|..+...+|. .+.+. ..+....+||+|+.. +
T Consensus 68 ~k-f----d~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~-~~~~~~~~~G~-~~~~~~~~~~~~~~GT~V~F~--P 138 (594)
T smart00433 68 GK-F----DDDAYKVSGGLHGVGASVVNALSTEFEVEVARDGK-EYKQSFSNNGK-PLSEPKIIGDTKKDGTKVTFK--P 138 (594)
T ss_pred CC-C----CCCCccccCCcccchHHHHHHhcCceEEEEEeCCc-EEEEEEeCCCe-ECccceecCCCCCCCcEEEEE--E
Confidence 21 1 10111235799999999999999999999998643 34333322121 11110 011234689999963 4
Q ss_pred ccccccC-----hHHHHHHHHHHhCCC-CcceEeee
Q 007926 256 EAGEYLE-----ESKLKELVKKYSEFI-NFPIYIWA 285 (584)
Q Consensus 256 d~~e~l~-----~~~lk~lvkkys~fi-~~PI~l~~ 285 (584)
+..-|.. ...|.+.++.++-.. ..-|.+++
T Consensus 139 d~~~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l~d 174 (594)
T smart00433 139 DLEIFGMTTDDDFELLKRRLRELAFLNKGVKITLND 174 (594)
T ss_pred CHHHhCCcccchHHHHHHHHHHHHhcCCCcEEEEec
Confidence 4433433 366888888876433 34555554
No 21
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.19 E-value=3.2e-06 Score=93.79 Aligned_cols=155 Identities=28% Similarity=0.351 Sum_probs=99.4
Q ss_pred CCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHHHHHhcc
Q 007926 97 LYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKS 175 (584)
Q Consensus 97 LYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~eeL~~~LgtIa~S 175 (584)
+-..|.-+|.|||-|+.||.. ..|.|.+..++ +.|.|+|||.|+-++||.-..-+.+.|
T Consensus 24 VI~RP~NAlKEliENSLDA~S--------------------T~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 24 VIQRPVNALKELIENSLDANS--------------------TSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred hhhchHHHHHHHHhccccCCC--------------------ceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence 344688899999999999953 35777665444 567899999999999998544444444
Q ss_pred chhHHHHhhhhcCCCCccccccce--eeEEEeecCEEEEEEeeCCCc-eeEEEecCCCceEEEeCCCCCCCCCCcEEEE-
Q 007926 176 GTSAFVEKMQTSGDLNLIGQFGVG--FYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRL- 251 (584)
Q Consensus 176 g~~~f~~~l~~~~~~~~IGqFGIG--F~S~FmVadkV~V~Sk~~~~~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L- 251 (584)
--..| .+..-|..||.- -+|+..-+-+|+|+|+..++. +|.- +-.+|... ..|.+-....||.|++
T Consensus 84 KL~kF-------EDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayra-sY~DGkm~--~~pKpcAgk~GT~I~ve 153 (694)
T KOG1979|consen 84 KLTKF-------EDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRA-SYRDGKMI--ATPKPCAGKQGTIITVE 153 (694)
T ss_pred hcchh-------HHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEE-Eeeccccc--cCCCCccCCCceEEEeh
Confidence 22222 233345555543 356666678999999997543 4432 23444322 2233334568999998
Q ss_pred -----------EeccccccccChHHHHHHHHHHhCC---CCcceEee
Q 007926 252 -----------HLRDEAGEYLEESKLKELVKKYSEF---INFPIYIW 284 (584)
Q Consensus 252 -----------~Lk~d~~e~l~~~~lk~lvkkys~f---i~~PI~l~ 284 (584)
+|+..+.+| .+|-.+|.+|+-+ +.|...-.
T Consensus 154 dLFYN~~~Rrkal~~~~EE~---~ki~dlv~ryAIHn~~VsFs~rk~ 197 (694)
T KOG1979|consen 154 DLFYNMPTRRKALRNHAEEY---RKIMDLVGRYAIHNPRVSFSLRKQ 197 (694)
T ss_pred HhhccCHHHHHHhcCcHHHH---HHHHHHHHHHheeCCCcceEEeec
Confidence 355555555 7788889999865 44544443
No 22
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.13 E-value=2e-06 Score=75.24 Aligned_cols=81 Identities=27% Similarity=0.422 Sum_probs=59.4
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
...|.|||+||+++... ...+.|.+..+.+.-.|+|.|||.||+.+++...+.... +++
T Consensus 7 ~~il~~ll~Na~~~~~~----------------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~-~~~---- 65 (111)
T PF02518_consen 7 RQILSELLDNAIKHSPE----------------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFF-TSD---- 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHH----------------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTS-HSS----
T ss_pred HHHHHHHHHHHHHHhcC----------------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhcc-ccc----
Confidence 35789999999999752 134667777776778999999999999999987443211 111
Q ss_pred HhhhhcCCCCccccccceeeEEEeecCE
Q 007926 182 EKMQTSGDLNLIGQFGVGFYSVYLVADY 209 (584)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~FmVadk 209 (584)
.+....+++|+|++.|..+++.
T Consensus 66 ------~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 66 ------KSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp ------SSSGGSSSSSHHHHHHHHHHHH
T ss_pred ------ccccccCCCChHHHHHHHHHHH
Confidence 1345567899999988888765
No 23
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.02 E-value=1.9e-05 Score=91.84 Aligned_cols=155 Identities=20% Similarity=0.313 Sum_probs=93.3
Q ss_pred hhHHHHhhhcHHH-HHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHH----------HHHHHHH
Q 007926 102 DIFLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE----------DLIKNLG 170 (584)
Q Consensus 102 ~vfLRELIqNA~D-A~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~e----------eL~~~Lg 170 (584)
...+.|||-||.| |++ +.. -.|+|.++.+ +.|+|.|||.||+.+ |+. |+
T Consensus 39 hhlv~EivdNaiDE~~A---------------G~a--~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt 98 (756)
T PRK14939 39 HHMVYEVVDNAIDEALA---------------GHC--DDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT 98 (756)
T ss_pred hhhhhHhhccccccccc---------------CCC--CEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee
Confidence 3578999999999 221 111 2566666654 489999999999987 444 33
Q ss_pred HHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCc-eEEEeCCCCCCCCCCcEE
Q 007926 171 TIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEI 249 (584)
Q Consensus 171 tIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I 249 (584)
.-.+|.+ | ....-.-.-|.-|+|.-++=.++.+++|.|+..+. .|..+...+.. -.+... +....+||+|
T Consensus 99 -~lhAggK-f----d~~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk-~~~q~f~~G~~~~~l~~~--g~~~~~GT~V 169 (756)
T PRK14939 99 -VLHAGGK-F----DQNSYKVSGGLHGVGVSVVNALSEWLELTIRRDGK-IHEQEFEHGVPVAPLKVV--GETDKTGTEV 169 (756)
T ss_pred -eecccCC-C----CCCcccccCCccCccceEeehccCeEEEEEEeCCe-EEEEEEecCccccCcccc--CCcCCCCcEE
Confidence 2233322 1 10011114689999999999999999999997543 34333322211 011111 2235689999
Q ss_pred EEEecccc--ccccChHHHHHHHHHHhCCC--CcceEeeec
Q 007926 250 RLHLRDEA--GEYLEESKLKELVKKYSEFI--NFPIYIWAS 286 (584)
Q Consensus 250 ~L~Lk~d~--~e~l~~~~lk~lvkkys~fi--~~PI~l~~~ 286 (584)
+......- ..-++...|...++.++ |+ ..-|.++++
T Consensus 170 ~F~PD~~iF~~~~~~~~~i~~rl~elA-~lnpgl~i~l~de 209 (756)
T PRK14939 170 RFWPSPEIFENTEFDYDILAKRLRELA-FLNSGVRIRLKDE 209 (756)
T ss_pred EEEECHHHcCCcccCHHHHHHHHHHHh-hcCCCCEEEEecc
Confidence 99543321 11236677888888876 44 345555554
No 24
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=97.96 E-value=1.1e-05 Score=92.70 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=90.8
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHH-------HHHHHHhc
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAK 174 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~-------~~LgtIa~ 174 (584)
...++|||-||.|-.. . +.. -.|.|.++.+ +.|+|.|||.||+.+--. ..+.++..
T Consensus 32 ~~vv~Elv~NaiDe~~--------a------g~a--~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ 94 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAM--------A------GYC--DTINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLH 94 (654)
T ss_pred HhhhHHhhhccccccc--------c------CCC--CEEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeeec
Confidence 4578899999999321 0 111 2566666543 469999999999975110 11222222
Q ss_pred cchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCc-eEEEeCCCCCCCCCCcEEEEEe
Q 007926 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEIRLHL 253 (584)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I~L~L 253 (584)
+|.+ |- ........|.-|+|..|+=.++.+++|.|+..+.. |..+...+.. -.+... +....+||+|+...
T Consensus 95 ag~k-f~----~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~-~~~~~~~G~~~~~l~~~--~~~~~~GT~V~F~p 166 (654)
T TIGR01059 95 AGGK-FD----KDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKI-YRQEFERGIPLGPLEVV--GETKKTGTTVRFWP 166 (654)
T ss_pred ccCc-cC----CCcceecCCccchhHHHHHHhcCeEEEEEEECCeE-EEEEEeCCCcccCceec--cCCCCCCcEEEEEE
Confidence 2221 11 01112357999999999999999999999985432 4333332211 011111 23457899999653
Q ss_pred cccccccc----ChHHHHHHHHHHhCCC-CcceEeee
Q 007926 254 RDEAGEYL----EESKLKELVKKYSEFI-NFPIYIWA 285 (584)
Q Consensus 254 k~d~~e~l----~~~~lk~lvkkys~fi-~~PI~l~~ 285 (584)
.+. -|+ +...|.+.++.++-.. ..-|.++.
T Consensus 167 dp~--~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~ 201 (654)
T TIGR01059 167 DPE--IFETTEFDFDILAKRLRELAFLNSGVKISLED 201 (654)
T ss_pred ChH--HhCCcccCHHHHHHHHHHhhccCCCeEEEEEe
Confidence 332 232 5677888898888332 34444444
No 25
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=97.96 E-value=2e-05 Score=90.37 Aligned_cols=156 Identities=17% Similarity=0.237 Sum_probs=91.5
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHH-------HHHHHHhcc
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKS 175 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~-------~~LgtIa~S 175 (584)
..++|||-||.|... . +.. -.|.|.++.+ +.|+|.|||.||+.+--. +.+.++-.+
T Consensus 40 ~~v~ElvdNaiDe~~--------a------g~a--~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lha 102 (638)
T PRK05644 40 HLVYEIVDNSIDEAL--------A------GYC--DHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHA 102 (638)
T ss_pred hhhHHhhhccccccc--------C------CCC--CEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeecc
Confidence 467899999999421 0 111 2566666654 489999999999986211 112222222
Q ss_pred chhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEeC-CCCCCCCCCcEEEEEec
Q 007926 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISED-TWNEPLGRGTEIRLHLR 254 (584)
Q Consensus 176 g~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~-~~~~~~~~GT~I~L~Lk 254 (584)
|.+ | ....-.-..|..|+|.-|+=.++.+++|+|+..+. .|..+..++ . .+.+. +.+....+||+|+..
T Consensus 103 g~k-f----d~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~-~~~~~~~~G-~-~~~~~~~~~~~~~~GT~I~F~-- 172 (638)
T PRK05644 103 GGK-F----GGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK-IYYQEYERG-V-PVTPLEVIGETDETGTTVTFK-- 172 (638)
T ss_pred cCc-c----CCCcccccCCccccchhhhhheeceEEEEEEeCCc-EEEEEEECC-e-EccCccccCCcCCCCcEEEEE--
Confidence 221 1 00011124799999999999999999999997543 444433332 1 11111 112234689999964
Q ss_pred ccccc----ccChHHHHHHHHHHhCCC-CcceEeee
Q 007926 255 DEAGE----YLEESKLKELVKKYSEFI-NFPIYIWA 285 (584)
Q Consensus 255 ~d~~e----~l~~~~lk~lvkkys~fi-~~PI~l~~ 285 (584)
++..- -++...|.+.++.++-.. ..-|.++.
T Consensus 173 Pd~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~ 208 (638)
T PRK05644 173 PDPEIFETTEFDYDTLATRLRELAFLNKGLKITLTD 208 (638)
T ss_pred ECHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEEe
Confidence 33222 235677888888887443 34555554
No 26
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=97.81 E-value=2.1e-05 Score=88.87 Aligned_cols=129 Identities=22% Similarity=0.306 Sum_probs=81.3
Q ss_pred HHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC-CccEEEEEECCCCCCHHHHHHHHH
Q 007926 92 IIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIGMTKEDLIKNLG 170 (584)
Q Consensus 92 lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~-~~~~L~I~DNGiGMT~eeL~~~Lg 170 (584)
|-..+.-.+..++++|||-||.||++. .|.|.++. +-..|.|.|||.|++..+..- ++
T Consensus 12 I~S~qvI~sl~sAVKELvENSiDAGAT--------------------~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~-l~ 70 (672)
T KOG1978|consen 12 ICSSQVITSLVSAVKELVENSIDAGAT--------------------AIDIKVKDYGSDSIEVSDNGSGISATDFEG-LA 70 (672)
T ss_pred cccCCeeccHHHHHHHHHhcCcccCCc--------------------eeeEecCCCCcceEEEecCCCCCCccchhh-hh
Confidence 333444556679999999999999752 45555543 446899999999999988774 21
Q ss_pred HHhccchhHHHHhhhhcCCCCcccccccee----eEEEeecCEEEEEEeeC-CCceeEEEecCCCceEEEeCCCCCCCCC
Q 007926 171 TIAKSGTSAFVEKMQTSGDLNLIGQFGVGF----YSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISEDTWNEPLGR 245 (584)
Q Consensus 171 tIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF----~S~FmVadkV~V~Sk~~-~~~~~~W~s~~~~~f~I~~~~~~~~~~~ 245 (584)
.+..+ .++.+-. ++..-|-.|| +|+..---.|.|.|++. ...+..|.-+.+|... ...+ -..++
T Consensus 71 --lkh~T----SKi~~f~--Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~-~k~~--~ar~~ 139 (672)
T KOG1978|consen 71 --LKHTT----SKIVSFA--DLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHII-QKKP--VARGR 139 (672)
T ss_pred --hhhhh----hcccchh--hhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCCcee-eecc--ccCCC
Confidence 12222 2232112 2333344444 46665545677778775 4457888888777644 2222 24689
Q ss_pred CcEEEEE
Q 007926 246 GTEIRLH 252 (584)
Q Consensus 246 GT~I~L~ 252 (584)
||+|.+.
T Consensus 140 GTTV~v~ 146 (672)
T KOG1978|consen 140 GTTVMVR 146 (672)
T ss_pred CCEEEHh
Confidence 9999983
No 27
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.44 E-value=0.00029 Score=57.77 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=57.3
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~ 182 (584)
..++|||.||.++... ....+.|.+..+...-.+.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~---------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE---------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC---------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC-------
Confidence 4689999999998641 023456666655555678999999999999988755432111
Q ss_pred hhhhcCCCCccccccceeeEEEeecC----EEEEEEe
Q 007926 183 KMQTSGDLNLIGQFGVGFYSVYLVAD----YVEVISK 215 (584)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~FmVad----kV~V~Sk 215 (584)
......+.+|+|+..+-.+++ .+.+.+.
T Consensus 61 -----~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 61 -----SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred -----CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 112234678999987777766 5555543
No 28
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.14 E-value=0.00019 Score=81.51 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=71.5
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHH
Q 007926 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (584)
Q Consensus 101 ~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f 180 (584)
-..+++||++|+.||.++ .|.|.++-..-.+.|.|||+||+++||.. ||+--..++=.|
T Consensus 22 la~~VeElv~NSiDA~At--------------------~V~v~V~~~t~sv~ViDdG~G~~rdDl~~-lg~ry~TSK~h~ 80 (1142)
T KOG1977|consen 22 LAQCVEELVLNSIDAEAT--------------------CVAVRVNMETFSVQVIDDGFGMGRDDLEK-LGNRYFTSKCHS 80 (1142)
T ss_pred HHHHHHHHHhhccccCce--------------------EEEEEecCceeEEEEEecCCCccHHHHHH-HHhhhhhhhcee
Confidence 356899999999999652 34444556777899999999999999985 665332222112
Q ss_pred HHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCC-CceeE--EEecCCCceEEEeCCCCCCCCCCcEEEEE
Q 007926 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQYV--WESKADGAFAISEDTWNEPLGRGTEIRLH 252 (584)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~-~~~~~--W~s~~~~~f~I~~~~~~~~~~~GT~I~L~ 252 (584)
..-+ ......|--|=.++|.-=++. .+|+|+..+ ..+|. -...|...-.+..+ ..+...||+|+++
T Consensus 81 ~ndl---~~~~tyGfRGeALasIsd~s~-l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD--~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 81 VNDL---ENPRTYGFRGEALASISDMSS-LVVISKKKNRTMKTFVKKFQSGSALKALEID--VTRASSGTTVTVY 149 (1142)
T ss_pred cccc---ccccccccchhhhhhhhhhhh-hhhhhhhcCCchhHHHHHHhccccceecccc--cccccCCcEEEeH
Confidence 2111 123345655655555433443 446666543 23332 11112212122222 2356789999984
No 29
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.08 E-value=0.00052 Score=71.61 Aligned_cols=50 Identities=20% Similarity=0.405 Sum_probs=35.2
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKN 168 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~ 168 (584)
..+..||+||..+. .....+.|.+..+.+.-.|+|.|||.||+++++.+-
T Consensus 250 ~il~nLi~NA~k~~----------------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~i 299 (356)
T PRK10755 250 LLLRNLVENAHRYS----------------PEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGEL 299 (356)
T ss_pred HHHHHHHHHHHhhC----------------CCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHh
Confidence 35677778876542 112345666666656668999999999999998863
No 30
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.05 E-value=0.00052 Score=78.87 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=46.9
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~ 182 (584)
..+.+||+||.++.. ....+.|++..+.+.-.|+|.|||.||+++.+.+.+..-..++
T Consensus 582 ~vl~nLl~NAik~~~----------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~------ 639 (679)
T TIGR02916 582 RVLGHLVQNALEATP----------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTT------ 639 (679)
T ss_pred HHHHHHHHHHHHhCC----------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCC------
Confidence 367788899887742 1234566665555556799999999999998555442211111
Q ss_pred hhhhcCCCCccccccceeeEEEeec
Q 007926 183 KMQTSGDLNLIGQFGVGFYSVYLVA 207 (584)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~FmVa 207 (584)
. . +..|+|.+.|-.++
T Consensus 640 -----~--~--~G~GLGL~i~~~iv 655 (679)
T TIGR02916 640 -----K--G--AGMGIGVYECRQYV 655 (679)
T ss_pred -----C--C--CCcchhHHHHHHHH
Confidence 1 1 56789987665443
No 31
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.01 E-value=0.0009 Score=55.72 Aligned_cols=81 Identities=22% Similarity=0.348 Sum_probs=53.5
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~ 182 (584)
..++||+.||.++.. ....+.|.+..+.....+.|.|+|.||+.+.+...+.... ++.
T Consensus 8 ~~~~~l~~n~~~~~~----------------~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~-~~~----- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTP----------------EGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFF-RTD----- 65 (111)
T ss_pred HHHHHHHHHHHhcCC----------------CCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeE-ECC-----
Confidence 357788888777642 1234667777666667899999999999988886553322 111
Q ss_pred hhhhcCCCCccccccceeeEEEeecCEE
Q 007926 183 KMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (584)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~FmVadkV 210 (584)
......++.|+|+..|-.++.+.
T Consensus 66 -----~~~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 66 -----GRSRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred -----CCCCCCCcccccHHHHHHHHHHc
Confidence 11233577899998876666554
No 32
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.87 E-value=0.0019 Score=68.97 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=35.3
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
..+.+||.||..+. .....+.|.+..+.+.-.|+|.|||.||+.+++...+
T Consensus 371 ~vl~nli~Na~~~~----------------~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~ 421 (475)
T PRK11100 371 QALGNLLDNAIDFS----------------PEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIF 421 (475)
T ss_pred HHHHHHHHHHHHhC----------------CCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 34667777776652 1223456666655556679999999999999888644
No 33
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=96.87 E-value=0.0042 Score=71.62 Aligned_cols=159 Identities=19% Similarity=0.264 Sum_probs=91.5
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHH-------HHHHHHhcc
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKS 175 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~-------~~LgtIa~S 175 (584)
..+.|+|.||+|=.- . + ..-.|.|.++. ++.|+|.|||-||+.+--. +.+.+...+
T Consensus 37 hlv~EIvdNavDE~~--------a------g--~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~Lha 99 (637)
T TIGR01058 37 HLVWEIVDNSVDEVL--------A------G--YADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHA 99 (637)
T ss_pred eehhhhhcchhhhhh--------c------C--CCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEecc
Confidence 356699999999421 0 1 12357777764 4689999999999863211 011111122
Q ss_pred chhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCc-eeEEEecCCCceEEEeCC-CCCCCCCCcEEEEEe
Q 007926 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDT-WNEPLGRGTEIRLHL 253 (584)
Q Consensus 176 g~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~-~~~W~s~~~~~f~I~~~~-~~~~~~~GT~I~L~L 253 (584)
|.+ | ....-.-.-|.-|||.-.+=.++.+++|.++.++.. ...|+..+. .+.+.. .+....+||+|+...
T Consensus 100 Ggk-f----d~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg~---~~~~l~~~~~~~~~GT~V~F~P 171 (637)
T TIGR01058 100 GGK-F----DQGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGGK---IVQSLKKIGTTKKTGTLVHFHP 171 (637)
T ss_pred cCc-C----CCCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCCc---CcCCcccccCCCCCceEEEEEe
Confidence 211 1 000011235899999999999999999999875432 234543211 111110 123346899999876
Q ss_pred ccccc--cccChHHHHHHHHHHhCCC-CcceEeeec
Q 007926 254 RDEAG--EYLEESKLKELVKKYSEFI-NFPIYIWAS 286 (584)
Q Consensus 254 k~d~~--e~l~~~~lk~lvkkys~fi-~~PI~l~~~ 286 (584)
..+-- .=++.+.|+..++..+-.. ..-|.++++
T Consensus 172 D~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~de 207 (637)
T TIGR01058 172 DPTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTDK 207 (637)
T ss_pred CHHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEec
Confidence 55321 1136677888887776433 467777654
No 34
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.85 E-value=0.0012 Score=70.94 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=37.7
Q ss_pred CccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeec
Q 007926 136 TKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 207 (584)
Q Consensus 136 ~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVa 207 (584)
..+.|.+..+.+.-.|+|.|||.||+.+++.+-+...-+. . .......|..|+|++-|-.++
T Consensus 372 ~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~-~---------~~~~~~~~g~GlGL~iv~~i~ 433 (466)
T PRK10549 372 GSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRT-E---------GSRNRASGGSGLGLAICLNIV 433 (466)
T ss_pred CEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccC-C---------CCcCCCCCCCcHHHHHHHHHH
Confidence 3456666555555578999999999999888644322111 0 111224567899987544433
No 35
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.82 E-value=0.0016 Score=69.42 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=37.7
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
...|..|+.||.+++... + .....+.|.+....+.-.|+|.|||+||+.+.+.+-|
T Consensus 389 ~~vl~Nl~~NAik~~~~~-------~-----~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF 444 (494)
T TIGR02938 389 RSLFKALVDNAIEAMNIK-------G-----WKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVF 444 (494)
T ss_pred HHHHHHHHHHHHHHhhcc-------C-----CCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhc
Confidence 347899999999987521 0 0112334444444455679999999999998887654
No 36
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.77 E-value=0.0016 Score=69.28 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=49.1
Q ss_pred CccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEe
Q 007926 136 TKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISK 215 (584)
Q Consensus 136 ~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk 215 (584)
..+.|++..+.+.-.|+|.|||.||+.+.+.+.+-..-++.. .....-+..|+|.+-+--++++
T Consensus 373 ~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~----------~~~~~~~g~GlGL~i~~~~~~~------ 436 (457)
T TIGR01386 373 GTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP----------ARSNSGEGTGLGLAIVRSIMEA------ 436 (457)
T ss_pred ceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc----------ccCCCCCCccccHHHHHHHHHH------
Confidence 345666655545557999999999999988865533222111 0112235688998654333322
Q ss_pred eCCCceeEEEecCCCceEEEeCCCCCCCCCCcEEEEEe
Q 007926 216 HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHL 253 (584)
Q Consensus 216 ~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~L 253 (584)
+ +|.+.+.. + +.||+|+|.+
T Consensus 437 ~------------~G~~~~~~-~-----~~G~~~~~~~ 456 (457)
T TIGR01386 437 H------------GGRASAES-P-----DGKTRFILRF 456 (457)
T ss_pred C------------CCEEEEEe-C-----CCceEEEEec
Confidence 1 23555544 2 4688888865
No 37
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.69 E-value=0.0026 Score=69.50 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=38.1
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
..+.+|+.||.+|... .....+.|++..+.+.-.|+|.|||.||+.+++.+.|
T Consensus 436 ~vl~nLl~NAi~~~~~--------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF 488 (542)
T PRK11086 436 TILGNLIENALEAVGG--------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIF 488 (542)
T ss_pred HHHHHHHHHHHHHhhc--------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 4578999999998641 1123455555555555578999999999999988655
No 38
>PRK10604 sensor protein RstB; Provisional
Probab=96.67 E-value=0.0016 Score=70.55 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=45.4
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~ 182 (584)
..+..||.||..+. ...+.|.+..+.+.-.|+|.|||.||+.+++.+-+....+..
T Consensus 322 ~vl~NLl~NAik~~------------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~------ 377 (433)
T PRK10604 322 RVLDNLLNNALRYA------------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD------ 377 (433)
T ss_pred HHHHHHHHHHHHhC------------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC------
Confidence 35677777776542 123566766666666899999999999999886443221110
Q ss_pred hhhhcCCCCccccccceeeEE
Q 007926 183 KMQTSGDLNLIGQFGVGFYSV 203 (584)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~ 203 (584)
.+....-|.+|+|++-|
T Consensus 378 ----~~~~~~~~g~GLGL~iv 394 (433)
T PRK10604 378 ----PSRDRATGGCGLGLAIV 394 (433)
T ss_pred ----CCCCCCCCCccchHHHH
Confidence 01112236789998643
No 39
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.62 E-value=0.0022 Score=68.54 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=35.2
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
.+++||+||..+. ...+.|++..+.+.-+|+|.|||.||+.+++.+.+
T Consensus 357 ~l~nli~NA~~~~------------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 404 (461)
T PRK09470 357 ALENIVRNALRYS------------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIF 404 (461)
T ss_pred HHHHHHHHHHHhC------------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhc
Confidence 4778888877542 12356777666666689999999999999887644
No 40
>PRK10364 sensor protein ZraS; Provisional
Probab=96.55 E-value=0.0033 Score=68.18 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=36.9
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
..+..||.||.+|.. ....+.|.+..+.+.-.|+|.|||.||+.+.+.+-+
T Consensus 351 ~il~NLl~NA~k~~~----------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 351 QVLLNLYLNAIQAIG----------------QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred HHHHHHHHHHHHhcC----------------CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHh
Confidence 346778889988852 123456666665555689999999999999887644
No 41
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.48 E-value=0.0032 Score=73.93 Aligned_cols=50 Identities=16% Similarity=0.330 Sum_probs=34.6
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
..|..||+||..+.. ...+.|++..+.+.-.|+|.|||+||+.+++.+-+
T Consensus 516 ~il~NLl~NAik~~~-----------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 565 (921)
T PRK15347 516 QILVNLLGNAVKFTE-----------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIF 565 (921)
T ss_pred HHHHHHHHHHhhcCC-----------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHh
Confidence 356677777776521 12356666555555679999999999999987644
No 42
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.38 E-value=0.0047 Score=72.71 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=51.1
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHh
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~ 183 (584)
.|..||+||+.+.. ...+.|.+..+...-.|.|.|||+||+.+++.+.|.. |..
T Consensus 565 il~NLl~NAik~~~-----------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~~- 618 (914)
T PRK11466 565 VITNLLSNALRFTD-----------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQP--------FVQ- 618 (914)
T ss_pred HHHHHHHHHHHhCC-----------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhch--------hhc-
Confidence 56677777776531 1235555555555557999999999999998865422 211
Q ss_pred hhhcCCCCccccccceeeEEEee----cCEEEEEEeeC
Q 007926 184 MQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKHN 217 (584)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~FmV----adkV~V~Sk~~ 217 (584)
. ....|..|+|++-|--+ +-++.|.|...
T Consensus 619 ---~--~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 619 ---V--SGKRGGTGLGLTISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred ---C--CCCCCCCcccHHHHHHHHHHcCCEEEEEecCC
Confidence 0 11236789998755433 34566666543
No 43
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.34 E-value=0.015 Score=71.84 Aligned_cols=162 Identities=15% Similarity=0.210 Sum_probs=94.6
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH-------H-HHHHh
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------N-LGTIA 173 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~-------~-LgtIa 173 (584)
.-.+-|+|.||.|-. +| ++. .-.|.|.++.+++.|+|.|||-||+-+--.. . |++.-
T Consensus 79 ~kifdEIldNAvDe~--~r-----~g~--------~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~Lh 143 (1465)
T PLN03237 79 YKIFDEILVNAADNK--QR-----DPK--------MDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLL 143 (1465)
T ss_pred hhhHHHHhhhhHhHH--hh-----cCC--------CCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeee
Confidence 357889999999963 12 221 2367888887888999999999998642110 0 22222
Q ss_pred ccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCC-Ccee--EEEecCC-C-ceEEEeCCCCCCCCCCcE
Q 007926 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQY--VWESKAD-G-AFAISEDTWNEPLGRGTE 248 (584)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~-~~~~--~W~s~~~-~-~f~I~~~~~~~~~~~GT~ 248 (584)
.||+ |- ...-.-.-|+-|||.-.|=.++.+++|.++... ...| .|..+.+ . .-.+.. .....+||+
T Consensus 144 AGgk--Fd----d~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~---~~~~~~GT~ 214 (1465)
T PLN03237 144 TSSN--YD----DNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITK---CKKSENWTK 214 (1465)
T ss_pred cccc--CC----CCcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceecc---CCCCCCceE
Confidence 2221 20 011122469999999999999999999998321 2333 5664211 1 101211 112368999
Q ss_pred EEEEeccccc--cccChHHHHHHHHHH---hCCC--CcceEeeecc
Q 007926 249 IRLHLRDEAG--EYLEESKLKELVKKY---SEFI--NFPIYIWASK 287 (584)
Q Consensus 249 I~L~Lk~d~~--e~l~~~~lk~lvkky---s~fi--~~PI~l~~~~ 287 (584)
|+..-...-. .-++.+.|..+.++. +.|+ ..-|+|++++
T Consensus 215 VtF~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 215 VTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred EEEEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 9887443221 123666665544443 4566 3788888654
No 44
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.33 E-value=0.0045 Score=67.47 Aligned_cols=50 Identities=28% Similarity=0.343 Sum_probs=33.6
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~eeL~~~L 169 (584)
.+.+||.||+.+.. ....+.|.+..+.+. -.|.|+|||+||+.+.+...+
T Consensus 504 ~~~nli~na~~~~~----------------~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f 554 (607)
T PRK11360 504 VLLNILINAVQAIS----------------ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIF 554 (607)
T ss_pred HHHHHHHHHHHHhc----------------CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhc
Confidence 56677777776542 122345555444444 689999999999999887543
No 45
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.30 E-value=0.0068 Score=71.68 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=53.5
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
-.|..||+||..+.. .+.+.|.+....+. -.|.|.|||+||+.+++.+-|....+.
T Consensus 582 ~il~nLi~NAik~~~-----------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~------ 638 (968)
T TIGR02956 582 QVLINLVGNAIKFTD-----------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQA------ 638 (968)
T ss_pred HHHHHHHHHHHhhCC-----------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhcc------
Confidence 367888888887631 23456676666665 679999999999999988655321111
Q ss_pred HhhhhcCCCCccccccceeeEEEee----cCEEEEEEee
Q 007926 182 EKMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKH 216 (584)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~FmV----adkV~V~Sk~ 216 (584)
.....-|..|+|++-|-.+ +-++.|.|..
T Consensus 639 ------~~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~ 671 (968)
T TIGR02956 639 ------DGRRRSGGTGLGLAISQRLVEAMDGELGVESEL 671 (968)
T ss_pred ------CCCCCCCCccHHHHHHHHHHHHcCCEEEEEecC
Confidence 1122236788998655333 3456665544
No 46
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.30 E-value=0.0039 Score=67.19 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=36.3
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
...+..||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+
T Consensus 319 ~~vl~NLl~NAik~~~----------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 370 (430)
T PRK11006 319 RSAISNLVYNAVNHTP----------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLT 370 (430)
T ss_pred HHHHHHHHHHHHhcCC----------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhc
Confidence 3467788899887742 123345555555555679999999999999988643
No 47
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.25 E-value=0.0046 Score=68.63 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=33.1
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
.+.-||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+.+++..-+
T Consensus 382 vl~NLi~NAik~~~------------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF 429 (485)
T PRK10815 382 VMGNVLDNACKYCL------------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIF 429 (485)
T ss_pred HHHHHHHHHHHhcC------------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHh
Confidence 56666777666542 1245666555555579999999999999987644
No 48
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.22 E-value=0.023 Score=69.34 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=91.7
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH-------H-HHHHhc
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------N-LGTIAK 174 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~-------~-LgtIa~ 174 (584)
-.+-|+|-||.|-. +| ++. --.|.|.++.+++.|+|.|||-||+-+--.. . |+++-.
T Consensus 55 ki~dEIldNAvDe~--~~-----~g~--------~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~Lha 119 (1135)
T PLN03128 55 KIFDEILVNAADNK--QR-----DPS--------MDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLT 119 (1135)
T ss_pred HHHHHHHHHHHHHh--hh-----cCC--------CcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeecc
Confidence 46789999999963 12 221 2378888888788999999999998642110 0 122222
Q ss_pred cchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeC-CCcee--EEEecCC-Cce-EEEeCCCCCCCCCCcEE
Q 007926 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKAD-GAF-AISEDTWNEPLGRGTEI 249 (584)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~-~~~~~--~W~s~~~-~~f-~I~~~~~~~~~~~GT~I 249 (584)
+|+ |- ...-.-.-|.-|||.-.+=.++.+++|.+... ++..| .|+.... ..- .|.. .....+||+|
T Consensus 120 Ggk--Fd----d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~---~~~~~~GT~I 190 (1135)
T PLN03128 120 SSN--FD----DNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITS---CKASENWTKI 190 (1135)
T ss_pred ccc--cC----CccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceecc---CCCCCCceEE
Confidence 222 21 01112246999999999999999999999843 22333 4542110 010 1111 1123589999
Q ss_pred EEEeccccc--cccChHHH---HHHHHHHhCCC--CcceEeeecc
Q 007926 250 RLHLRDEAG--EYLEESKL---KELVKKYSEFI--NFPIYIWASK 287 (584)
Q Consensus 250 ~L~Lk~d~~--e~l~~~~l---k~lvkkys~fi--~~PI~l~~~~ 287 (584)
+......-- .-++.+.+ ..-++..+.|+ ..-|+|++++
T Consensus 191 tF~PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnder 235 (1135)
T PLN03128 191 TFKPDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGKK 235 (1135)
T ss_pred EEEECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 987543221 11344443 33344456576 3677777643
No 49
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.026 Score=64.40 Aligned_cols=162 Identities=20% Similarity=0.246 Sum_probs=96.9
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH-------HHHHHh
Q 007926 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIA 173 (584)
Q Consensus 101 ~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~-------~LgtIa 173 (584)
....+-|.|.||.|--- . + ..-.|.|.++ .++.|+|.|||-||+-+.=.. .+.|+-
T Consensus 37 LhHlv~EVvDNsiDEal--a------------G--~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~L 99 (635)
T COG0187 37 LHHLVWEVVDNSIDEAL--A------------G--YADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVL 99 (635)
T ss_pred ceeeEeEeeechHhHHh--h------------C--cCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEee
Confidence 34567899999999421 1 2 2236777766 668999999999998654111 111222
Q ss_pred ccchhHHHHhhhhcCCCC-ccccccceeeEEEeecCEEEEEEeeCCCc-eeEEEecCCCceEEEeCCCCCCCCCCcEEEE
Q 007926 174 KSGTSAFVEKMQTSGDLN-LIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (584)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~-~IGqFGIGF~S~FmVadkV~V~Sk~~~~~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L 251 (584)
..|.+ |- ++... -=|--|||.--|=.++++++|+++.++.. .-.|+. |...-.+..........+||+|+.
T Consensus 100 HAGGK-Fd-----~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~-G~~~~~l~~ig~~~~~~~GT~V~F 172 (635)
T COG0187 100 HAGGK-FD-----NDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFER-GVPVTPLEVIGSTDTKKTGTKVRF 172 (635)
T ss_pred ccCcc-cC-----CCccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeC-CCcCCCceecccCCCCCCccEEEE
Confidence 22221 10 11111 24889999988999999999999986422 223432 211112222111134567999998
Q ss_pred Eecccc---ccccChHHHHHHHHHHhCCC-CcceEeeecc
Q 007926 252 HLRDEA---GEYLEESKLKELVKKYSEFI-NFPIYIWASK 287 (584)
Q Consensus 252 ~Lk~d~---~e~l~~~~lk~lvkkys~fi-~~PI~l~~~~ 287 (584)
+-.++- .+| +...|+..++.++=.. ..-|.++++.
T Consensus 173 ~PD~~iF~~~~f-~~~~l~~RlrelA~L~~gl~I~l~d~r 211 (635)
T COG0187 173 KPDPEIFGETEF-DYEILKRRLRELAFLNKGVKITLTDER 211 (635)
T ss_pred EcChHhcCCccc-CHHHHHHHHHHHhccCCCCEEEEEecc
Confidence 765432 233 6788888888776555 4778877644
No 50
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=95.96 E-value=0.029 Score=69.41 Aligned_cols=164 Identities=17% Similarity=0.238 Sum_probs=94.3
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH--------HHHHHh
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIA 173 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~--------~LgtIa 173 (584)
.-.+-|+|-||+|-.. | ++ ....--.|.|.++.+.+.|+|.|||-||+-+--.. .|+++-
T Consensus 59 ~ki~dEIldNAvDe~~--r-----~~-----~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~ 126 (1388)
T PTZ00108 59 YKIFDEILVNAADNKA--R-----DK-----GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLL 126 (1388)
T ss_pred hhhHHHHhhhhhhhhc--c-----cC-----CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEee
Confidence 3467899999999642 2 10 01123478888888878999999999997642111 122222
Q ss_pred ccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCC-Cce--eEEEecCC--CceEEEeCCCCCCCCCCcE
Q 007926 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQ--YVWESKAD--GAFAISEDTWNEPLGRGTE 248 (584)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~-~~~--~~W~s~~~--~~f~I~~~~~~~~~~~GT~ 248 (584)
.+|+ | ......---|.-|||.-.+=.++.+++|.+.... +.. -.|+.... ..-.|... ....+||+
T Consensus 127 aGgk--f----dd~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~~---~~~~~GT~ 197 (1388)
T PTZ00108 127 TSSN--Y----DDTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITSY---DGKKDYTK 197 (1388)
T ss_pred cccc--C----CCCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCCC---CCCCCceE
Confidence 2222 1 0011122469999999999999999999999861 233 35653211 01122211 11158999
Q ss_pred EEEEeccccc--cccChHH---HHHHHHHHhCCC-CcceEeeec
Q 007926 249 IRLHLRDEAG--EYLEESK---LKELVKKYSEFI-NFPIYIWAS 286 (584)
Q Consensus 249 I~L~Lk~d~~--e~l~~~~---lk~lvkkys~fi-~~PI~l~~~ 286 (584)
|+..-...-. .-++.+. |+.-++..+-.. ..-|+|+++
T Consensus 198 VtF~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnde 241 (1388)
T PTZ00108 198 VTFYPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNGE 241 (1388)
T ss_pred EEEEeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcEEEEeCc
Confidence 9987544321 1235555 555555554333 367777764
No 51
>PRK09303 adaptive-response sensory kinase; Validated
Probab=95.70 E-value=0.018 Score=61.72 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=47.1
Q ss_pred CCCCc---hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCC-ccEEEEEECCCCCCHHHHHHHHHHH
Q 007926 97 LYSNK---DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTI 172 (584)
Q Consensus 97 LYs~~---~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~-~~~L~I~DNGiGMT~eeL~~~LgtI 172 (584)
+|.++ .-.|..||.||+.+.. ....+.|.+....+ .-.|+|.|||.||+.+++.+-|..-
T Consensus 266 v~~d~~~l~qvl~NLl~NAik~~~----------------~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf 329 (380)
T PRK09303 266 VYADQERIRQVLLNLLDNAIKYTP----------------EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDR 329 (380)
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCC----------------CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCc
Confidence 45554 3457788888877631 11233444333222 3468999999999999887644211
Q ss_pred hccchhHHHHhhhhcCCCCccccccceeeEEEeec
Q 007926 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 207 (584)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVa 207 (584)
.+. ....-.+..|+|++-|..++
T Consensus 330 -~~~-----------~~~~~~~G~GLGL~i~~~iv 352 (380)
T PRK09303 330 -VRL-----------PRDEGTEGYGIGLSVCRRIV 352 (380)
T ss_pred -eeC-----------CCCCCCCcccccHHHHHHHH
Confidence 000 01122356899986655544
No 52
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=95.68 E-value=0.015 Score=58.59 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=34.7
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
.+.+||.||..+.. ....+.|.+....+.-.|+|.|||.||+.+.+.+.+
T Consensus 233 vl~nll~Nai~~~~----------------~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if 282 (333)
T TIGR02966 233 AFSNLVSNAIKYTP----------------EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLT 282 (333)
T ss_pred HHHHHHHHhheeCC----------------CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhc
Confidence 67888888876631 122345555544445579999999999999887644
No 53
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.59 E-value=0.04 Score=63.32 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=88.5
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH--H--H------HHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--N--L------GTI 172 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~--~--L------gtI 172 (584)
..+.|+|-||+|-.- | ++. ...-.|.|.++ ++.++|.|||-||+-+--.+ . . .++
T Consensus 48 hi~~EIldNavDe~~--~-----~~~------g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~ 112 (602)
T PHA02569 48 KIIDEIIDNSVDEAI--R-----TNF------KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTR 112 (602)
T ss_pred eeeehhhhhhhhhhh--c-----cCC------CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEe
Confidence 345699999999521 1 221 12236777777 67899999999998643211 0 0 122
Q ss_pred hccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCcee--EEEecCCCceEEEeCCCCCCCCCCcEEE
Q 007926 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQY--VWESKADGAFAISEDTWNEPLGRGTEIR 250 (584)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~--~W~s~~~~~f~I~~~~~~~~~~~GT~I~ 250 (584)
..+|.+ | . ..-.---|.-|||.-.+=.++.+++|+++. +...| .|.. |. ...+.+.+....+||+|+
T Consensus 113 LhaGgk-F-d----~~ykvSGGlhGVG~svvNaLS~~~~V~v~~-~~~~~~q~f~~---G~-~~~~~~~~~~~~~GT~V~ 181 (602)
T PHA02569 113 TKAGSN-F-D----DTNRVTGGMNGVGSSLTNFFSVLFIGETCD-GKNEVTVNCSN---GA-ENISWSTKPGKGKGTSVT 181 (602)
T ss_pred eccccc-c-C----CcceeeCCcCCccceeeeccchhhheEEEc-CCEEEEEEecC---Cc-ccCCcccCCCCCCccEEE
Confidence 222222 2 1 111123699999998888999999998854 33333 3432 21 111111233446899999
Q ss_pred EEecccccc--ccC---hHHHHHHHHHHhCCC--CcceEeeec
Q 007926 251 LHLRDEAGE--YLE---ESKLKELVKKYSEFI--NFPIYIWAS 286 (584)
Q Consensus 251 L~Lk~d~~e--~l~---~~~lk~lvkkys~fi--~~PI~l~~~ 286 (584)
.....+--. -++ .+.|.+-++..+ |+ ..-|+++++
T Consensus 182 F~PD~~iF~~~~~~~~~~~~l~~Rl~elA-~Ln~Gl~I~l~de 223 (602)
T PHA02569 182 FIPDFSHFEVNGLDQQYLDIILDRLQTLA-VVFPDIKFTFNGK 223 (602)
T ss_pred EEECHHHhCCCccCccHHHHHHHHHHHHh-cCCCCCEEEEEec
Confidence 876543211 022 345555555554 44 467777654
No 54
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=95.30 E-value=0.019 Score=63.47 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=48.2
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHh
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~ 183 (584)
.+.+||.||.+|+.+. + .....+.|.+..+.+.-.|.|.|||.||+.+++.+-|.. +.+++
T Consensus 436 vl~nLl~NAi~~~~~~-------~-----~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk------ 496 (545)
T PRK15053 436 IVGNLLDNAFEASLRS-------D-----EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTR------ 496 (545)
T ss_pred HHHHHHHHHHHHHhhC-------C-----CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCC------
Confidence 5889999999997421 1 112334455444444457899999999999988764421 22211
Q ss_pred hhhcCCCCccccccceeeEEEeec
Q 007926 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (584)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~FmVa 207 (584)
... -|..|+|++-+..++
T Consensus 497 -----~~~-~~g~GlGL~ivk~iv 514 (545)
T PRK15053 497 -----ADE-PGEHGIGLYLIASYV 514 (545)
T ss_pred -----CCC-CCCceeCHHHHHHHH
Confidence 111 245699987655443
No 55
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.28 E-value=0.11 Score=60.48 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=55.4
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEc-CCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d-~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
-.|..||.||.++.. ...+.|.+..+ .+.-.|+|.|||+||+.+++.+-|-..-+. +
T Consensus 401 qvl~NLl~NAik~~~-----------------~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~-~---- 458 (779)
T PRK11091 401 QILWNLISNAVKFTQ-----------------QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV-K---- 458 (779)
T ss_pred HHHHHHHHHHHHhCC-----------------CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc-c----
Confidence 456789999887631 12356666655 333578999999999999988655322111 0
Q ss_pred HhhhhcCCCCccccccceeeEEEee----cCEEEEEEeeCC
Q 007926 182 EKMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKHND 218 (584)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~FmV----adkV~V~Sk~~~ 218 (584)
........|.-|+|+.-|-.+ +-++.|.|....
T Consensus 459 ----~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~ 495 (779)
T PRK11091 459 ----DSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGK 495 (779)
T ss_pred ----CCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCC
Confidence 011223346678898655443 467778776543
No 56
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.22 E-value=0.028 Score=67.49 Aligned_cols=87 Identities=18% Similarity=0.327 Sum_probs=51.8
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~ 182 (584)
-.|.-||+||..+.. ...+.|.+..+.+.-.|+|.|||+||+.+++.+-+...-+.+
T Consensus 565 qvl~NLl~NAik~t~-----------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~------ 621 (924)
T PRK10841 565 QVISNLLSNAIKFTD-----------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVG------ 621 (924)
T ss_pred HHHHHHHHHHHhhCC-----------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCC------
Confidence 357778888776631 123556665554555789999999999999886442211100
Q ss_pred hhhhcCCCCccccccceeeEEEee----cCEEEEEEee
Q 007926 183 KMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKH 216 (584)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~FmV----adkV~V~Sk~ 216 (584)
.....-.+..|+|+.-|-.+ .-++.|.|..
T Consensus 622 ----~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 622 ----TGVQRNFQGTGLGLAICEKLINMMDGDISVDSEP 655 (924)
T ss_pred ----CCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcC
Confidence 01111235678998765443 3466666654
No 57
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.15 E-value=0.022 Score=64.49 Aligned_cols=62 Identities=29% Similarity=0.499 Sum_probs=45.5
Q ss_pred eeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCC
Q 007926 82 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMT 161 (584)
Q Consensus 82 Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT 161 (584)
-.++--||=.+|+| |||||.||++. ...+.++|+...+.+.-.|+|+|||.|+.
T Consensus 491 V~~~~iRLeQVLvN------------Ll~NALDA~~~--------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~ 544 (603)
T COG4191 491 VMANEIRLEQVLVN------------LLQNALDAMAG--------------QEDRRLSIRAQREGGQVVLTVRDNGPGIA 544 (603)
T ss_pred eecchhhHHHHHHH------------HHHHHHHHhcC--------------CCCCeeEEEEEecCCeEEEEEccCCCCCC
Confidence 34444455556665 89999999861 23455677777777777899999999999
Q ss_pred HHHHHHHH
Q 007926 162 KEDLIKNL 169 (584)
Q Consensus 162 ~eeL~~~L 169 (584)
.+-+...|
T Consensus 545 ~e~~~~lF 552 (603)
T COG4191 545 PEALPHLF 552 (603)
T ss_pred HHHHHhhc
Confidence 99888654
No 58
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.13 E-value=0.097 Score=61.92 Aligned_cols=83 Identities=27% Similarity=0.403 Sum_probs=51.9
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEc---------------CCccEEEEEECCCCCCHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD---------------KEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d---------------~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
..+..||+||..++. ....+.|.+... .+.-.|.|.|||+||+.+++.+
T Consensus 563 qvl~NLl~NAik~~~----------------~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~ 626 (828)
T PRK13837 563 QVLMNLCSNAAQAMD----------------GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPH 626 (828)
T ss_pred HHHHHHHHHHHHHcc----------------cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 357888999888753 123345555543 2223689999999999998875
Q ss_pred HHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEee----cCEEEEEEeeC
Q 007926 168 NLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKHN 217 (584)
Q Consensus 168 ~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmV----adkV~V~Sk~~ 217 (584)
-|. . |. + . .. +..|+|++-|-.+ +-++.|.|...
T Consensus 627 iFe----~----F~---~--~-~~--~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 627 IFE----P----FF---T--T-RA--GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred hhC----C----cc---c--C-CC--CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 431 1 11 0 0 11 6779998765443 45677777653
No 59
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.04 E-value=0.039 Score=66.20 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=49.8
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCC---ccEEEEEECCCCCCHHHHHHHHHHHhccchhH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE---KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSA 179 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~---~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~ 179 (584)
-.|.-||+||..+.. ...+.|.+..... .-.|+|.|||+||+.+++.+-+...- +.+
T Consensus 568 QVL~NLL~NAik~t~-----------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~-t~~-- 627 (894)
T PRK10618 568 KILLLLLNYAITTTA-----------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFL-NQT-- 627 (894)
T ss_pred HHHHHHHHHHHHhCC-----------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccc-cCC--
Confidence 356778888877631 1234455543322 23689999999999999886442211 100
Q ss_pred HHHhhhhcCCCCccccccceeeEEEee----cCEEEEEEeeC
Q 007926 180 FVEKMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKHN 217 (584)
Q Consensus 180 f~~~l~~~~~~~~IGqFGIGF~S~FmV----adkV~V~Sk~~ 217 (584)
.....-+..|+|+.-|--+ +-++.|.|...
T Consensus 628 --------~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g 661 (894)
T PRK10618 628 --------QGDRYGKASGLTFFLCNQLCRKLGGHLTIKSREG 661 (894)
T ss_pred --------CCCCCCCCcChhHHHHHHHHHHcCCEEEEEECCC
Confidence 1111224578887555433 45677776654
No 60
>PRK03660 anti-sigma F factor; Provisional
Probab=94.77 E-value=0.059 Score=49.49 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=31.2
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTK 162 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~ 162 (584)
...+.|++.||.... +. . .....+.|++......-.++|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~----~~---~------~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHG----YE---N------NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHh----cC---C------CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 346899999988542 10 0 111345666655555557899999999984
No 61
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.75 E-value=0.066 Score=48.72 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=30.4
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCC
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMT 161 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT 161 (584)
..+.||++||..+. +. + .....+.|.+....+.-.|+|.|+|.||+
T Consensus 42 ~~l~eli~Nai~h~----~~----~-----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 42 TAVSEAVTNAIIHG----YE----E-----NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHhc----cC----C-----CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 46889999988541 10 0 11234556665555556789999999997
No 62
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=94.66 E-value=0.14 Score=61.09 Aligned_cols=164 Identities=21% Similarity=0.243 Sum_probs=92.8
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH-------HHHHHhc
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAK 174 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~-------~LgtIa~ 174 (584)
...+.|+|.||+|=.- + + ..-.|.|.++. ++.++|.|||-||+-+.-.. ...|+..
T Consensus 131 hhLv~EIlDNSVDE~l--a------------G--~~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~Lh 193 (903)
T PTZ00109 131 HQLLFEILDNSVDEYL--A------------G--ECNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLH 193 (903)
T ss_pred eEEEEEEeeccchhhc--c------------C--CCcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEec
Confidence 4467899999999421 0 1 12356776665 46899999999998643221 1123333
Q ss_pred cchhHHHHh-------h----------------------hh------cCC-CCccccccceeeEEEeecCEEEEEEeeCC
Q 007926 175 SGTSAFVEK-------M----------------------QT------SGD-LNLIGQFGVGFYSVYLVADYVEVISKHND 218 (584)
Q Consensus 175 Sg~~~f~~~-------l----------------------~~------~~~-~~~IGqFGIGF~S~FmVadkV~V~Sk~~~ 218 (584)
+|.+ |-.. . ++ ... .---|.-|||.-.+=.++.+++|.++..+
T Consensus 194 AGGK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG 272 (903)
T PTZ00109 194 SGGK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG 272 (903)
T ss_pred cCcc-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC
Confidence 4322 2110 0 00 001 12468899999999999999999998854
Q ss_pred Ccee--EEEecCCCceEEEeCCCCCC-CCCCcEEEEEec-cc-ccc-c--------------cChHHHHHHHHHHhCCC-
Q 007926 219 DKQY--VWESKADGAFAISEDTWNEP-LGRGTEIRLHLR-DE-AGE-Y--------------LEESKLKELVKKYSEFI- 277 (584)
Q Consensus 219 ~~~~--~W~s~~~~~f~I~~~~~~~~-~~~GT~I~L~Lk-~d-~~e-~--------------l~~~~lk~lvkkys~fi- 277 (584)
..| .|+- |...-.+... +.. ..+||+|+.... +. ... . ++.+.|++.++..+-..
T Consensus 273 -K~y~q~F~r-G~~v~pLkvi--g~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNp 348 (903)
T PTZ00109 273 -KIYSIELSK-GKVTKPLSVF--SCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNP 348 (903)
T ss_pred -EEEEEEeCC-CcccCCcccc--CCcCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHhccCC
Confidence 333 3421 2110011111 122 358999998766 43 111 1 25567887777776333
Q ss_pred CcceEeeecc
Q 007926 278 NFPIYIWASK 287 (584)
Q Consensus 278 ~~PI~l~~~~ 287 (584)
..-|.+++++
T Consensus 349 GL~I~L~DeR 358 (903)
T PTZ00109 349 GLTFYLVDER 358 (903)
T ss_pred CcEEEEEecC
Confidence 4667776543
No 63
>PRK10490 sensor protein KdpD; Provisional
Probab=94.54 E-value=0.051 Score=65.13 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=35.4
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
..|..||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+-|
T Consensus 781 qVL~NLL~NAik~s~----------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IF 831 (895)
T PRK10490 781 RVLINLLENAVKYAG----------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIF 831 (895)
T ss_pred HHHHHHHHHHHHhCC----------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhc
Confidence 457788888877631 123455665555555679999999999999887544
No 64
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.41 E-value=0.055 Score=53.31 Aligned_cols=49 Identities=29% Similarity=0.462 Sum_probs=36.1
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
...|..||+||.+|+. .+.+.|.+....+.-.|.|.|||.||+.+.+..
T Consensus 230 ~~vl~nLi~NAi~~~~-----------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 230 RQVLVNLLSNAIKYTP-----------------GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHHhccCC-----------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 4478899999999862 134455555443446899999999999999664
No 65
>PRK09835 sensor kinase CusS; Provisional
Probab=94.36 E-value=0.056 Score=58.34 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=25.0
Q ss_pred ccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 137 ~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
.+.|++..+.+.-.|+|.|||.||+.+++...+
T Consensus 396 ~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if 428 (482)
T PRK09835 396 AITVRCQEVDHQVQLVVENPGTPIAPEHLPRLF 428 (482)
T ss_pred eEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHh
Confidence 356666555555679999999999999988644
No 66
>PRK10337 sensor protein QseC; Provisional
Probab=94.26 E-value=0.056 Score=58.06 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=30.5
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
.++.||.||..+.. ... .|.|.... ..|+|.|||.||+.+++...+
T Consensus 356 vl~Nli~NA~k~~~----------------~~~--~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if 401 (449)
T PRK10337 356 LVRNLLDNAIRYSP----------------QGS--VVDVTLNA--RNFTVRDNGPGVTPEALARIG 401 (449)
T ss_pred HHHHHHHHHHhhCC----------------CCC--eEEEEEEe--eEEEEEECCCCCCHHHHHHhc
Confidence 56777777666531 112 34444332 379999999999999988654
No 67
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=94.14 E-value=0.059 Score=57.55 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=24.4
Q ss_pred ccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 137 ~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
.+.|.+..+.+.-.|+|.|||.||+.+++.+.+
T Consensus 350 ~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~ 382 (435)
T PRK09467 350 WIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLF 382 (435)
T ss_pred eEEEEEEecCCEEEEEEEecCCCcCHHHHHHhc
Confidence 355665555444579999999999999987644
No 68
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.10 E-value=0.086 Score=61.98 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=50.1
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC--Cc---cEEEEEECCCCCCHHHHHHHHHHHhccchh
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK--EK---KILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~--~~---~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~ 178 (584)
.|..||+||..+.. ...+.|.+.... ++ -.|+|.|||+||+.+++.+-+-..-+..
T Consensus 412 vl~NLl~NAik~~~-----------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-- 472 (919)
T PRK11107 412 IITNLVGNAIKFTE-----------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQAD-- 472 (919)
T ss_pred HHHHHHHHHhhcCC-----------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCC--
Confidence 56788888876631 123444544322 21 3589999999999999876442211110
Q ss_pred HHHHhhhhcCCCCccccccceeeEEEee----cCEEEEEEeeC
Q 007926 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKHN 217 (584)
Q Consensus 179 ~f~~~l~~~~~~~~IGqFGIGF~S~FmV----adkV~V~Sk~~ 217 (584)
.......|..|+|++-|-.+ +-++.|.|...
T Consensus 473 --------~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 473 --------ASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred --------CCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCC
Confidence 01112346789998755443 35567766553
No 69
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=93.97 E-value=0.086 Score=59.38 Aligned_cols=72 Identities=26% Similarity=0.379 Sum_probs=48.5
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
-+.|.=||-||.||..+ + ..+..+.+.|..+.+.-.|.|.|||.||+++.... +-..|.|.+.
T Consensus 429 itIlGNLidNA~eA~~~--------~-----~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~-iFe~G~Stk~--- 491 (537)
T COG3290 429 VTILGNLIDNALEALLA--------P-----EENKEIELSLSDRGDELVIEVADTGPGIPPEVRDK-IFEKGVSTKN--- 491 (537)
T ss_pred HHHHHHHHHHHHHHhhc--------c-----CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHH-HHhcCccccC---
Confidence 35677799999999852 1 22344455554444445679999999999998885 4455665331
Q ss_pred HhhhhcCCCCccccccceee
Q 007926 182 EKMQTSGDLNLIGQFGVGFY 201 (584)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~ 201 (584)
.|.-|+|.|
T Consensus 492 -----------~~~rGiGL~ 500 (537)
T COG3290 492 -----------TGGRGIGLY 500 (537)
T ss_pred -----------CCCCchhHH
Confidence 477899984
No 70
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=93.89 E-value=0.078 Score=61.86 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=47.5
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~ 182 (584)
..+..||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+-+.. ..+++.
T Consensus 600 ~il~NLI~NAik~s~----------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~-F~t~~~---- 658 (703)
T TIGR03785 600 QMLDKLVDNAREFSP----------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDS-MVSVRD---- 658 (703)
T ss_pred HHHHHHHHHHHHHCC----------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCC-CeecCC----
Confidence 346677788777641 12335666665555567999999999999998864422 111110
Q ss_pred hhhhcCCCCccccccceeeEEEeecC
Q 007926 183 KMQTSGDLNLIGQFGVGFYSVYLVAD 208 (584)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~FmVad 208 (584)
....--+..|+|++-|-.+++
T Consensus 659 -----~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 659 -----QGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred -----CCCCCCCCccHHHHHHHHHHH
Confidence 011112458999876554443
No 71
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.88 E-value=0.071 Score=65.04 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=32.5
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEE---cCCc--cEEEEEECCCCCCHHHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL---DKEK--KILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~---d~~~--~~L~I~DNGiGMT~eeL~~~L 169 (584)
-.+..||+||.++.. ...+.|.+.. +... -.|+|.|||+||+.+++.+-+
T Consensus 831 qvl~NLl~NAik~~~-----------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF 885 (1197)
T PRK09959 831 QVLSNLLSNALKFTT-----------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLF 885 (1197)
T ss_pred HHHHHHHHHHHHhCC-----------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhh
Confidence 467889999888742 1123344332 2222 247899999999999987644
No 72
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=93.49 E-value=0.15 Score=58.24 Aligned_cols=53 Identities=23% Similarity=0.462 Sum_probs=38.1
Q ss_pred HHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCcc--EEEEEECCCCCCHHHHHHHH
Q 007926 106 RELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK--ILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 106 RELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~--~L~I~DNGiGMT~eeL~~~L 169 (584)
-=||+||.+|+++.... ..+...|++..+..+. .+.|.|||.|++.+++.+.|
T Consensus 606 ~NliKNA~EAi~~~~~~-----------e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~ 660 (712)
T COG5000 606 GNLLKNAAEAIEAVEAE-----------ERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRAL 660 (712)
T ss_pred HHHHHhHHHHhhhcccc-----------cCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhc
Confidence 34899999999865421 1112267777766554 67999999999999988744
No 73
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=92.98 E-value=0.22 Score=47.41 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=37.2
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
.++.|++.||+....+ + .....+.|.+....+.-.+.|.|+|.||+.+.+..
T Consensus 45 lav~Ea~~Nai~Hg~~-------~------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~ 96 (161)
T PRK04069 45 IAVSEACTNAVQHAYK-------E------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKS 96 (161)
T ss_pred HHHHHHHHHHHHhccC-------C------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhcc
Confidence 4799999999987531 0 11234566666666667899999999999776543
No 74
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=92.98 E-value=0.17 Score=45.25 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=52.4
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
..++.|++.||+.+... . .....+.|++..+...-.|.|.|+|.|++...+.....
T Consensus 33 ~lav~E~~~Nav~H~~~---------~----~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~----------- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYP---------G----DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDP----------- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCC---------C----CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccc-----------
Confidence 45789999999988631 0 12345667777777778899999999998775543110
Q ss_pred HhhhhcCCCCccccccceeeEEEeecCEEEE
Q 007926 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 212 (584)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V 212 (584)
........-|.|++=.=.++|++.+
T Consensus 89 ------~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 ------WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred ------ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0012223445555545556899988
No 75
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=92.20 E-value=0.16 Score=48.48 Aligned_cols=87 Identities=23% Similarity=0.363 Sum_probs=52.8
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~ 182 (584)
..+.|++.||+.+.- +. .....+.|.+..+.+.-.+.|+|+|.||+...+..-++ ....
T Consensus 45 lav~Ea~~Nai~ha~---------~~----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~----- 103 (159)
T TIGR01924 45 IAVSEACTNAVKHAY---------KE----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDG----- 103 (159)
T ss_pred HHHHHHHHHHHHhcc---------CC----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCC-----
Confidence 479999999988752 00 12344566666666666788999999998776553111 0000
Q ss_pred hhhhcCCCCccccccceeeEEEeecCEEEEEE
Q 007926 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVIS 214 (584)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~S 214 (584)
......-..-|.|++-+=.++|.+.+.+
T Consensus 104 ----~~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 104 ----SEPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred ----CCCcccCCCCccCHHHHHHhccEEEEEe
Confidence 0011111234788776667789888865
No 76
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.73 E-value=0.19 Score=59.01 Aligned_cols=128 Identities=22% Similarity=0.287 Sum_probs=75.2
Q ss_pred HHHHhhhcHHHHH----HHHHhhhccCccccCCCCCCccEEEEEEcCCcc--EEEEEECCCCCCHHHHHHHHHHHhccch
Q 007926 104 FLRELISNASDAL----DKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK--ILSIRDRGIGMTKEDLIKNLGTIAKSGT 177 (584)
Q Consensus 104 fLRELIqNA~DA~----~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~--~L~I~DNGiGMT~eeL~~~LgtIa~Sg~ 177 (584)
.|.=||=||+|.+ +.||. . +-.+...|.+..-..++ .|+|+|+|-|++++-|.+.-..=|-- +
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a--------~--GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli-~ 504 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRA--------A--GKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLI-T 504 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHH--------c--CCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCC-C
Confidence 4566889999996 23332 1 45567788888765544 57999999999999887632111100 0
Q ss_pred hHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeE---EEecCCCceEEEeCCCCCCCCCCcEEEEEec
Q 007926 178 SAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYV---WESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (584)
Q Consensus 178 ~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~---W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk 254 (584)
.+-.+.|. +.. -+-.=|...|.-|++|+=.|++.=+.-++ .+ .-+|..+|.. ..++||+++|.|-
T Consensus 505 ~~~a~~lS---d~E---i~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~-~LgG~I~V~S-----~~G~GT~Fti~LP 572 (716)
T COG0643 505 EEEAETLS---DEE---ILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIE-QLGGSISVSS-----EPGKGTTFTIRLP 572 (716)
T ss_pred hHHhccCC---HHH---HHHHHhcCCCCcchhhhcccCCccCHHHHHHHHH-HcCCEEEEEe-----cCCCCeEEEEecC
Confidence 00000011 100 01122777899999998777764111110 11 1246777765 3588999999875
No 77
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=91.59 E-value=0.22 Score=56.12 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=28.7
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE 163 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~e 163 (584)
.++|+|+||..+. ....+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 473 il~ell~NA~kha-----------------~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHA-----------------QASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhC-----------------CCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 4677777765441 112356666555555679999999999964
No 78
>PRK13560 hypothetical protein; Provisional
Probab=91.21 E-value=0.2 Score=57.44 Aligned_cols=47 Identities=26% Similarity=0.422 Sum_probs=29.5
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEc-CCccEEEEEECCCCCCHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKE 163 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d-~~~~~L~I~DNGiGMT~e 163 (584)
.|.+||+||..+.. +. .....+.|.+... .+.-.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~---------~~----~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAF---------PD----GAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhc---------cC----CCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 67899999988742 11 1122334444333 122468999999999875
No 79
>PRK10547 chemotaxis protein CheA; Provisional
Probab=91.19 E-value=0.9 Score=53.15 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=33.8
Q ss_pred HHHhhhcHHHHHH----HHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 105 LRELISNASDALD----KIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 105 LRELIqNA~DA~~----k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
|..||.||.|+.- .++. .|......+.|......+.-.|+|.|+|.||+.+.+.+
T Consensus 390 L~hLirNAidHgie~p~~R~~--------~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLA--------AGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHh--------cCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 5689999999862 1111 11011223344443333344689999999999988764
No 80
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=90.53 E-value=0.29 Score=54.81 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=28.0
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE 163 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~e 163 (584)
.++|++.||..+.. ...+.|++..+.+.-.|+|+|||.||+.+
T Consensus 414 il~nlL~NAiKha~-----------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD-----------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC-----------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 45677777665421 12355555555555579999999999854
No 81
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.45 E-value=0.25 Score=52.57 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=37.3
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI 166 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~ 166 (584)
.-+++|.|+||.-.- ....+.|++..+.+.-+|+|.|||.|.+.+...
T Consensus 281 ~rivQEaltN~~rHa-----------------~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~~ 328 (365)
T COG4585 281 FRIVQEALTNAIRHA-----------------QATEVRVTLERTDDELRLEVIDNGVGFDPDKEG 328 (365)
T ss_pred HHHHHHHHHHHHhcc-----------------CCceEEEEEEEcCCEEEEEEEECCcCCCccccC
Confidence 358899999987552 234577888877777899999999999977654
No 82
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.30 E-value=0.47 Score=47.91 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=34.1
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCc--cEEEEEECCCCCCHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK--KILSIRDRGIGMTKE 163 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~--~~L~I~DNGiGMT~e 163 (584)
.++-||++||.-... +. .....++|.+..+.++ ..++|.|||.|++.+
T Consensus 125 liv~EL~tNa~Khaf------~~-------~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHAF------LS-------RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhcC------CC-------CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 367899999987642 11 2345566666666664 589999999999854
No 83
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=89.90 E-value=0.48 Score=49.03 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=31.8
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC-----C-----ccEEEEEECCCCCCHHHHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-----E-----KKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~-----~-----~~~L~I~DNGiGMT~eeL~~ 167 (584)
...++.||+||..|+.. ....+.|.+.... . .-.|.|.|||.||+.+.+..
T Consensus 239 ~~vl~nLl~NA~~~~~~---------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 299 (348)
T PRK11073 239 EQVLLNIVRNALQALGP---------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDT 299 (348)
T ss_pred HHHHHHHHHHHHHHhcc---------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhh
Confidence 45688999999998630 1122333322110 0 12589999999999987765
No 84
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=88.44 E-value=1.4 Score=47.94 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=75.4
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHH
Q 007926 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (584)
Q Consensus 101 ~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f 180 (584)
-.-.|-||.-||..|.=+..- .++ ..-+++.|.|....++-++.|+|-|=|++..++.+ |..-..|....
T Consensus 261 L~ymlfElfKNamrATve~h~---~~~-----~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~dr-lf~Y~ySTa~~- 330 (414)
T KOG0787|consen 261 LYYMLFELFKNAMRATVEHHG---DDG-----DELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDR-LFSYMYSTAPA- 330 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---cCC-----CCCCCeEEEEecCCcceEEEEecCCCCcChhHHHH-HHhhhcccCCC-
Confidence 356899999999999754221 111 12466788887777888999999999999999986 44555553221
Q ss_pred HHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEeCCCCCCCCCCcEEEEEeccccccc
Q 007926 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEY 260 (584)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~ 260 (584)
..+......+.-.||-|+=-+=++|. .. +|.-.+... .+.||.+.++||....++
T Consensus 331 --~~~d~~~~~plaGfG~GLPisrlYa~-------yf-----------~Gdl~L~Sl-----eG~GTD~yI~Lk~ls~~~ 385 (414)
T KOG0787|consen 331 --PSSDNNRTAPLAGFGFGLPISRLYAR-------YF-----------GGDLKLQSL-----EGIGTDVYIYLKALSMEA 385 (414)
T ss_pred --CCCCCCCcCcccccccCCcHHHHHHH-------Hh-----------CCCeeEEee-----eccccceEEEeccCCccc
Confidence 00111123456667777521111111 00 122222221 367999999999766544
No 85
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=84.58 E-value=1.4 Score=49.99 Aligned_cols=43 Identities=21% Similarity=0.504 Sum_probs=31.8
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE 163 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~e 163 (584)
.+||-++||.-.- ...++.|.+....+.-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa-----------------~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHA-----------------QASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhc-----------------ccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 6899999987542 123456676666666789999999999854
No 86
>PRK13557 histidine kinase; Provisional
Probab=83.58 E-value=1.8 Score=47.16 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=16.9
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q 007926 150 ILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 150 ~L~I~DNGiGMT~eeL~~~L 169 (584)
+|+|.|||.||+.+.+..-|
T Consensus 326 ~i~v~D~G~Gi~~~~~~~if 345 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARVM 345 (540)
T ss_pred EEEEEcCCCCCCHHHHHhcc
Confidence 68999999999998877533
No 87
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=83.07 E-value=3.3 Score=39.37 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=53.1
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
.+++-|++.||.-+.-+. +| +..++.|.+..+.+.-.++|.|.|.|+. ++...++--
T Consensus 42 ~~av~E~~~N~v~Ha~~~------~~------~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~--------- 98 (146)
T COG2172 42 AIAVSEALTNAVKHAYKL------DP------SEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG--------- 98 (146)
T ss_pred HHHHHHHHHHHHHHHhhc------CC------CCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC---------
Confidence 568999999999885320 11 1245667777777778899999996665 444433211
Q ss_pred HhhhhcCCCCccccc---cceeeEEEeecCEEEEEEee
Q 007926 182 EKMQTSGDLNLIGQF---GVGFYSVYLVADYVEVISKH 216 (584)
Q Consensus 182 ~~l~~~~~~~~IGqF---GIGF~S~FmVadkV~V~Sk~ 216 (584)
....+.- |.|++-+=-+.|+|.+....
T Consensus 99 --------~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 99 --------DTTAEGLQEGGLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred --------CCCCcccccccccHHHHhhhheeEEEEecc
Confidence 1222333 66665555578888887544
No 88
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=82.42 E-value=1.4 Score=50.80 Aligned_cols=66 Identities=21% Similarity=0.311 Sum_probs=40.6
Q ss_pred EEEEEE--cCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeec----CEEEE
Q 007926 139 EIQIKL--DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA----DYVEV 212 (584)
Q Consensus 139 ~I~I~~--d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVa----dkV~V 212 (584)
.|.|.. -.+.-++.|.|||+|++.+-+.+-|.-.-+-+ ....+-| -|+|..-|-.++ -++-|
T Consensus 658 ~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~-----------s~~~y~g-tG~GL~I~kkI~e~H~G~i~v 725 (750)
T COG4251 658 DIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLH-----------SRDEYLG-TGLGLAICKKIAERHQGRIWV 725 (750)
T ss_pred ceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcC-----------chhhhcC-CCccHHHHHHHHHHhCceEEE
Confidence 455543 34567899999999999988876553221111 2233445 899986655443 35556
Q ss_pred EEee
Q 007926 213 ISKH 216 (584)
Q Consensus 213 ~Sk~ 216 (584)
.|+.
T Consensus 726 Es~~ 729 (750)
T COG4251 726 ESTP 729 (750)
T ss_pred eecC
Confidence 6654
No 89
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=81.74 E-value=6.5 Score=43.63 Aligned_cols=56 Identities=25% Similarity=0.279 Sum_probs=40.0
Q ss_pred CCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCC--ccEEEEEECCCCCCHHHHHH
Q 007926 98 YSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE--KKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 98 Ys~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~--~~~L~I~DNGiGMT~eeL~~ 167 (584)
+-+|...|-=||-||.-|+-+. ..+.+.|.|..-.. .-.+.|.|||.||++.-+..
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~--------------~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEP--------------KRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred ccCchHHHhHHHHHHHHHhccc--------------CCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 4578888889999999998421 22344566654333 34689999999999887764
No 90
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=80.22 E-value=2.4 Score=47.11 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=17.0
Q ss_pred cEEEEEEc-CCccEEEEEECCCCCCH
Q 007926 138 LEIQIKLD-KEKKILSIRDRGIGMTK 162 (584)
Q Consensus 138 l~I~I~~d-~~~~~L~I~DNGiGMT~ 162 (584)
+.|.+... .+.-.|.|.|||+||+.
T Consensus 492 i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 492 IAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred EEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 45555444 23346899999999985
No 91
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=77.11 E-value=6.3 Score=47.03 Aligned_cols=40 Identities=18% Similarity=0.417 Sum_probs=32.3
Q ss_pred CCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHh
Q 007926 134 DNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIA 173 (584)
Q Consensus 134 ~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa 173 (584)
+..++.|.+..+.++-.+.|.|||-|++.+++.+-|-...
T Consensus 793 ~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~ 832 (890)
T COG2205 793 PGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFY 832 (890)
T ss_pred CCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhh
Confidence 3455777777777778899999999999999998775544
No 92
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=76.19 E-value=5.5 Score=43.46 Aligned_cols=53 Identities=26% Similarity=0.440 Sum_probs=34.1
Q ss_pred EEEEEEcC--CccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceee
Q 007926 139 EIQIKLDK--EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFY 201 (584)
Q Consensus 139 ~I~I~~d~--~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~ 201 (584)
+|.+.... ..-.++|.|+|+|++++++.+-|-..-+-.+ ......|.-|+|++
T Consensus 363 ~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk----------ARsR~~gGTGLGLa 417 (459)
T COG5002 363 RITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK----------ARSRKMGGTGLGLA 417 (459)
T ss_pred eEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh----------hhhhcCCCCchhHH
Confidence 45554443 3346899999999999999987754332211 12234577888873
No 93
>PRK13559 hypothetical protein; Provisional
Probab=74.56 E-value=3.6 Score=42.95 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=27.2
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC--CccEEEEEECCCCCCH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK--EKKILSIRDRGIGMTK 162 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~--~~~~L~I~DNGiGMT~ 162 (584)
-.|.|||.||+.+.. .+ .....+.|.+.... +.-.|.+.|||.||+.
T Consensus 270 ~vl~nLi~NA~k~~~------~~-------~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 270 LVLHELAVNAIKHGA------LS-------ADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHHhHHHhcc------cc-------CCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 377899999976631 00 11233444441132 3347888999999764
No 94
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=72.31 E-value=2.9 Score=49.55 Aligned_cols=95 Identities=26% Similarity=0.266 Sum_probs=57.0
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEE--cCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL--DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~--d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f 180 (584)
-.+-|||.||+|-+..++-. . .+. .-++..+|.|.. -..+ .|.|+|.||..+-+..++.....+ +.+
T Consensus 149 ~a~aeLldnalDEi~~~~tf--~--~vd--~I~p~~d~~i~a~~v~~~---~~s~~gg~~~~~~i~~~m~l~~~~-k~e- 217 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGATF--V--RVD--YINPVMDIFIRALVVQLK---RISDDGGGMKPEVIRKCMSLGYSS-KKE- 217 (775)
T ss_pred Chhhhhccccccccccccce--E--Eee--eecccccccceeEEeecc---ceeccccccCHHHHHHHHHhhhhh-hhh-
Confidence 46889999999977532211 0 000 112222222211 0011 167899999999999877654433 321
Q ss_pred HHhhhhcCCCCccccccceeeEEEe-ecCEEEEEEee
Q 007926 181 VEKMQTSGDLNLIGQFGVGFYSVYL-VADYVEVISKH 216 (584)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~Fm-VadkV~V~Sk~ 216 (584)
...-+||+|.||.+.-| ++-.+.|.++.
T Consensus 218 --------~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 218 --------ANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred --------hhhhhhhhccccccchhhhccceeEeehh
Confidence 13578999999988766 67777777773
No 95
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=71.06 E-value=7.4 Score=43.86 Aligned_cols=49 Identities=33% Similarity=0.209 Sum_probs=35.3
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC---CccEEEEEECCCCCCHHHHHHHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~---~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
.+--||-||+|||.- . ...|+|..+. +.-+|-|.|||-|...+=+.+.|
T Consensus 568 VlvNl~~NaldA~~h----------------~-~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl 619 (673)
T COG4192 568 VLVNLIVNALDASTH----------------F-APWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLL 619 (673)
T ss_pred HHHHHHHHHHhhhcc----------------C-CceEEEEeecCcccceEEEEecCCCCCchhHHHHhc
Confidence 456689999999851 1 1467776654 34589999999999987666533
No 96
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=68.94 E-value=10 Score=45.20 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=70.3
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH--------HHHHHhcc
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIAKS 175 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~--------~LgtIa~S 175 (584)
..-|.+-||.| |.| |++. -.|.+.++++.+.+.|.+||-|+.-+.... .||+.-.|
T Consensus 57 i~dEilvNaad---k~r-----d~~m--------~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Llts 120 (842)
T KOG0355|consen 57 IFDEILVNAAD---KQR-----DPKM--------NTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTS 120 (842)
T ss_pred HHHHHhhcccc---ccc-----CCCc--------ceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhc
Confidence 45688899999 333 4432 368888999999999999999997654321 24444444
Q ss_pred chhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCC-Cc--eeEEEecCC--CceEEEeCCCCCCCCCCcEEE
Q 007926 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DK--QYVWESKAD--GAFAISEDTWNEPLGRGTEIR 250 (584)
Q Consensus 176 g~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~-~~--~~~W~s~~~--~~f~I~~~~~~~~~~~GT~I~ 250 (584)
+.= ......-.-|+-|.|..=|=.++-+..|.|..-. .. ...|..+-. ..-.+... ..+.+|+|+
T Consensus 121 sny------~d~ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~----~~~~yTkit 190 (842)
T KOG0355|consen 121 SNY------DDDEKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPS----TDEDYTKIT 190 (842)
T ss_pred ccc------CCCccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecC----CCCCcceEE
Confidence 321 0001112346666666666566666666665431 12 245765432 11122222 123399998
Q ss_pred EE
Q 007926 251 LH 252 (584)
Q Consensus 251 L~ 252 (584)
+.
T Consensus 191 F~ 192 (842)
T KOG0355|consen 191 FS 192 (842)
T ss_pred eC
Confidence 85
No 97
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=48.87 E-value=20 Score=39.10 Aligned_cols=59 Identities=17% Similarity=0.347 Sum_probs=40.4
Q ss_pred cCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 96 SLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 96 sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
.|-+...+.|--.+|-|.-.+++ + .....+.|.+.-..+.-+++|+|||.|++..+..+
T Consensus 351 ~l~~e~~talyRv~QEaltNIEr--H-----------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~ 409 (459)
T COG4564 351 KLKPEVATALYRVVQEALTNIER--H-----------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQ 409 (459)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHh--h-----------cCCeEEEEEeccCCcceEEEEecCCCCccchhhcc
Confidence 35555667777788888888773 2 12234555555555667899999999999766553
No 98
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=43.51 E-value=30 Score=38.19 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=21.9
Q ss_pred CCccEEEEEEcCCccEEEEEECCCCCC
Q 007926 135 NTKLEIQIKLDKEKKILSIRDRGIGMT 161 (584)
Q Consensus 135 ~~~l~I~I~~d~~~~~L~I~DNGiGMT 161 (584)
...+.|.+..+.+.-.+.|.|||+|++
T Consensus 428 AS~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 428 ASAVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred cceEEEEEeeCCcEEEEEEecCCcCCC
Confidence 345677777777777899999999987
No 99
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=43.33 E-value=18 Score=43.23 Aligned_cols=52 Identities=27% Similarity=0.456 Sum_probs=35.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEE-EeecCEEEEEEeeC
Q 007926 151 LSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSV-YLVADYVEVISKHN 217 (584)
Q Consensus 151 L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~-FmVadkV~V~Sk~~ 217 (584)
|+..|+|.||+.+++...+- | ......||++|=|+.|. +-.+..+.+.|+..
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~---------f------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~ 54 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN---------F------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKE 54 (775)
T ss_pred cccccCCCCcCchhhhhhhh---------h------cccccccccccCcccccccccCcccceeeccc
Confidence 67899999999999886432 1 12345678888887764 44666666666654
No 100
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=36.55 E-value=1.5e+02 Score=33.69 Aligned_cols=84 Identities=29% Similarity=0.379 Sum_probs=53.8
Q ss_pred hcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECC---CCCCHHHHHHHHHH
Q 007926 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRG---IGMTKEDLIKNLGT 171 (584)
Q Consensus 95 ~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNG---iGMT~eeL~~~Lgt 171 (584)
...+.-|..+|||+|.||.=.-+ | +.+ ...+.|.|.. .+|.|+-.| .|||.+++.++
T Consensus 265 ~~v~dyP~~alREai~NAv~HRD---Y---s~~-------~~~v~I~iyd----DRieI~NPGgl~~gi~~~~l~~~--- 324 (467)
T COG2865 265 VEVWDYPLEALREAIINAVIHRD---Y---SIR-------GRNVHIEIYD----DRIEITNPGGLPPGITPEDLLKG--- 324 (467)
T ss_pred eecccCCHHHHHHHHHHHHHhhc---c---ccC-------CCceEEEEEC----CeEEEECCCCCCCCCChhHcccC---
Confidence 34566799999999999985432 2 111 1245666643 489999988 69999998864
Q ss_pred HhccchhH-HHHhhhhcCCCCccccccceeeE
Q 007926 172 IAKSGTSA-FVEKMQTSGDLNLIGQFGVGFYS 202 (584)
Q Consensus 172 Ia~Sg~~~-f~~~l~~~~~~~~IGqFGIGF~S 202 (584)
+|=.++ .+.++ -.+.++|=+.|.|+-=
T Consensus 325 --~s~~RNp~LA~~--l~~~~liE~~GSGi~r 352 (467)
T COG2865 325 --RSKSRNPVLAKV--LRDMGLIEERGSGIRR 352 (467)
T ss_pred --CCcccCHHHHHH--HHHhhhHHHhCccHHH
Confidence 342222 22211 1356788899999743
No 101
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=29.17 E-value=91 Score=34.54 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=32.2
Q ss_pred CccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceee
Q 007926 136 TKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFY 201 (584)
Q Consensus 136 ~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~ 201 (584)
.+-.|.|.+.+ +..+.| ||.-|+.-+|...|..|| |++|||+.
T Consensus 211 ~p~~v~i~F~~-G~pv~i--ng~~~~~~~li~~lN~i~--------------------g~~GvGr~ 253 (394)
T TIGR00032 211 EPEVVTIDFEQ-GVPVAL--NGVSLDPVELILEANEIA--------------------GKHGVGRI 253 (394)
T ss_pred CCeEEEEEEEc-ceEEEE--CCccCCHHHHHHHHHHHH--------------------HhcccCcc
Confidence 34567777753 344555 899999999999887776 88999984
No 102
>PRK13820 argininosuccinate synthase; Provisional
Probab=27.83 E-value=96 Score=34.41 Aligned_cols=50 Identities=30% Similarity=0.454 Sum_probs=35.7
Q ss_pred CccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEE
Q 007926 136 TKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (584)
Q Consensus 136 ~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV 210 (584)
.+-.|.|.+.+ +..+.| ||.-|+.-+|...|..|| |++|||+. =+|-|++
T Consensus 211 ~p~~v~i~F~~-G~pv~l--ng~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~ve~r~ 260 (394)
T PRK13820 211 EPEIVEIEFEE-GVPVAI--NGEKMDGVELIRKLNEIA--------------------GKHGVGRT--DMMEDRV 260 (394)
T ss_pred CCeEEEEEEEc-cEEEEE--CCeeCCHHHHHHHHHHHH--------------------hhcccCcc--ccccccc
Confidence 34567777653 334455 899999999999887776 88999985 4455555
No 103
>PRK04527 argininosuccinate synthase; Provisional
Probab=26.06 E-value=1.1e+02 Score=34.18 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=35.9
Q ss_pred CccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEE
Q 007926 136 TKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (584)
Q Consensus 136 ~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV 210 (584)
.+-.|.|.+.+ +..+.| ||.=|+.-+|...|..|| |++|||+. =+|-|++
T Consensus 214 ~p~~v~i~Fe~-G~pv~l--nG~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~vEnr~ 263 (400)
T PRK04527 214 EALTVTIKFVE-GEAVAL--DGKPLPGAQILAKLNKLF--------------------AQYGVGRG--VYTGDTV 263 (400)
T ss_pred CCeEEEEEEEc-cEEEEE--CCEeCCHHHHHHHHHHHH--------------------hhcccCce--eeecccc
Confidence 34477777753 334445 899999999999987777 88999984 3444544
No 104
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=25.96 E-value=90 Score=33.90 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=14.2
Q ss_pred EEEEEECCCCCCHHHHHH
Q 007926 150 ILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 150 ~L~I~DNGiGMT~eeL~~ 167 (584)
.|.|.|||-|++.+-...
T Consensus 289 ~leViDNGPGVP~~L~~~ 306 (363)
T COG3852 289 PLEVIDNGPGVPPDLQDH 306 (363)
T ss_pred eeEEecCCCCCChHHhhh
Confidence 678999999999765443
No 105
>PRK00509 argininosuccinate synthase; Provisional
Probab=25.48 E-value=1.1e+02 Score=34.09 Aligned_cols=50 Identities=24% Similarity=0.467 Sum_probs=35.3
Q ss_pred CccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEE
Q 007926 136 TKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (584)
Q Consensus 136 ~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV 210 (584)
.+-.|.|.+.+ +..+.| ||.=|+.-+|...|..|| |++|||+. =+|-|++
T Consensus 214 ~p~~v~i~F~~-G~pval--nG~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~vE~r~ 263 (399)
T PRK00509 214 EPEYVEIEFEK-GVPVAI--NGEALSPAELIEELNELA--------------------GKHGIGRI--DIVENRL 263 (399)
T ss_pred CCeEEEEEEEc-cEEEEE--cCeeCCHHHHHHHHHHHH--------------------hhcccCcc--ccccccc
Confidence 34467777653 344555 899999999999887776 88999984 3444444
No 106
>PF08163 NUC194: NUC194 domain; InterPro: IPR012582 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This is domain B in the catalytic subunit of DNA-dependent protein kinases.; GO: 0003677 DNA binding, 0004677 DNA-dependent protein kinase activity, 0005524 ATP binding, 0006303 double-strand break repair via nonhomologous end joining, 0005634 nucleus
Probab=24.92 E-value=26 Score=38.70 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.5
Q ss_pred hhhhhhhhcccccccCCCcCCccc
Q 007926 436 ELLPKYLNFLKGLVDSDTLPLNVS 459 (584)
Q Consensus 436 ~llP~yl~FvkGVVDSddLpLNvS 459 (584)
.-||.||.|+.+.+.....|+||-
T Consensus 304 ~~mP~WM~~l~~~l~~~s~~~NIr 327 (394)
T PF08163_consen 304 SEMPPWMKFLHKKLSNPSTHLNIR 327 (394)
T ss_pred CCCCHHHHHHHHHhcCCCCCccee
Confidence 379999999999998899999974
No 107
>PLN00200 argininosuccinate synthase; Provisional
Probab=24.52 E-value=1.2e+02 Score=33.75 Aligned_cols=49 Identities=24% Similarity=0.423 Sum_probs=34.5
Q ss_pred ccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEE
Q 007926 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (584)
Q Consensus 137 ~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV 210 (584)
+-.|.|.+.. +..+.| ||.=|+.-+|+..|..|| |++|||+. =+|-|++
T Consensus 219 p~~v~i~Fe~-G~pv~l--nG~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~vE~r~ 267 (404)
T PLN00200 219 PEYIEIEFEK-GLPVAI--NGKTLSPATLLTKLNEIG--------------------GKHGIGRI--DMVENRF 267 (404)
T ss_pred CeEEEEEEEc-cEEEEE--CCeeCCHHHHHHHHHHHH--------------------hhcccCcc--ccccccc
Confidence 3467776653 334455 899999999999887776 88999984 3344444
No 108
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.98 E-value=4.2e+02 Score=26.02 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=48.7
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhH-H
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSA-F 180 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~-f 180 (584)
-...-|||.||+-.- ...++.|+.......-.+.+..---+-|..+..+.|..|-.-.-.+ .
T Consensus 65 gYl~NELiENAVKfr-----------------a~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll~~it~gDP~dLl 127 (184)
T COG5381 65 GYLANELIENAVKFR-----------------ATGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLLKVITEGDPLDLL 127 (184)
T ss_pred HHHHHHHHHhhhccc-----------------CCCcEEEEEEeccceEEEEecccCCCccHHHHHHHHHHHhcCChHHHH
Confidence 345679999998542 1235566666665555566666666778888887776665433333 3
Q ss_pred HHhhhhcCCCCccccccceeeE
Q 007926 181 VEKMQTSGDLNLIGQFGVGFYS 202 (584)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S 202 (584)
++.+..+.-..--..-|+|++.
T Consensus 128 ieRiEanA~~~d~~gSglGLLT 149 (184)
T COG5381 128 IERIEANALESDCEGSGLGLLT 149 (184)
T ss_pred HHHHHhhccCCCCcccccccee
Confidence 4444322212122345788764
No 109
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=21.99 E-value=1.1e+02 Score=27.08 Aligned_cols=29 Identities=21% Similarity=0.126 Sum_probs=13.8
Q ss_pred CCcccchhHHHH--HHHHHhcCCCccccccc
Q 007926 1 MRKWTIPSILLL--LFLVALIPDQGRNIQAK 29 (584)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 29 (584)
|++..+...||. |++.++.|.|-++..+.
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQKsKRSVt 31 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQKSKRSVT 31 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcccccccccee
Confidence 444443333332 33346677665555443
Done!