Query 007926
Match_columns 584
No_of_seqs 291 out of 1707
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:53:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 4E-124 1E-128 1048.3 30.5 479 77-584 3-500 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 2E-108 7E-113 920.8 30.9 434 77-584 22-479 (666)
3 1y4s_A Chaperone protein HTPG; 100.0 5E-107 2E-111 896.5 31.8 431 77-584 4-459 (559)
4 2ioq_A Chaperone protein HTPG; 100.0 6E-106 2E-110 897.3 30.5 431 77-584 4-459 (624)
5 3pry_A Heat shock protein HSP 100.0 4.2E-69 1.4E-73 544.9 15.7 212 347-584 1-230 (268)
6 1y6z_A Heat shock protein, put 100.0 3.9E-69 1.3E-73 545.5 14.8 215 347-584 1-233 (263)
7 1usu_A Heat shock protein HSP8 100.0 3.3E-69 1.1E-73 543.9 14.1 212 347-584 1-230 (260)
8 1hk7_A Heat shock protein HSP8 100.0 1.3E-68 4.3E-73 545.7 14.8 210 349-584 1-228 (288)
9 3hjc_A Heat shock protein 83-1 100.0 1.3E-67 4.3E-72 567.0 14.6 217 342-584 12-246 (444)
10 2gq0_A Chaperone protein HTPG; 100.0 2.4E-67 8.1E-72 539.6 15.8 210 349-584 2-231 (303)
11 3peh_A Endoplasmin homolog; st 100.0 5.9E-67 2E-71 533.3 16.6 265 70-347 16-281 (281)
12 3q6m_A Heat shock protein HSP 100.0 2.2E-65 7.6E-70 548.1 15.5 211 348-584 2-230 (448)
13 2cge_A ATP-dependent molecular 100.0 3.6E-65 1.2E-69 544.6 13.1 210 349-584 1-228 (405)
14 1qy5_A Endoplasmin; GRP94, NEC 100.0 2.5E-61 8.7E-66 490.8 15.7 262 75-347 3-269 (269)
15 3ied_A Heat shock protein; HSP 100.0 7.6E-60 2.6E-64 474.1 13.9 209 75-285 22-271 (272)
16 3nmq_A Heat shock protein HSP 100.0 7.3E-59 2.5E-63 464.9 19.1 211 76-289 15-225 (239)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 1.5E-54 5E-59 437.7 19.0 237 45-295 16-252 (256)
18 3t0h_A Heat shock protein HSP 100.0 1.6E-52 5.3E-57 417.1 17.7 216 76-294 8-223 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 2.7E-52 9.3E-57 417.0 17.0 211 74-287 6-221 (236)
20 2wer_A ATP-dependent molecular 100.0 1.4E-48 4.6E-53 385.5 17.8 211 77-289 3-213 (220)
21 1yc1_A HSP 86, heat shock prot 100.0 2.7E-48 9.3E-53 394.2 18.1 212 76-290 44-255 (264)
22 2ior_A Chaperone protein HTPG; 100.0 5.1E-43 1.8E-47 349.6 14.6 204 77-285 24-232 (235)
23 1b63_A MUTL; DNA mismatch repa 99.7 6.8E-18 2.3E-22 176.1 10.1 153 95-276 19-183 (333)
24 1h7s_A PMS1 protein homolog 2; 99.6 1.7E-15 5.9E-20 160.0 5.3 165 86-278 15-196 (365)
25 3h4l_A DNA mismatch repair pro 99.5 1.1E-14 3.9E-19 153.9 2.3 152 95-277 20-185 (367)
26 3na3_A DNA mismatch repair pro 99.3 3.2E-13 1.1E-17 141.9 0.4 149 96-276 24-187 (348)
27 1mu5_A Type II DNA topoisomera 98.9 6.5E-10 2.2E-14 121.1 5.2 148 102-274 34-196 (471)
28 3fv5_A DNA topoisomerase 4 sub 98.9 2.4E-09 8.4E-14 104.3 8.7 161 101-286 18-191 (201)
29 2zbk_B Type 2 DNA topoisomeras 98.8 1.8E-09 6.2E-14 119.2 5.2 158 102-284 33-206 (530)
30 1kij_A DNA gyrase subunit B; t 98.8 5.5E-09 1.9E-13 111.3 6.0 160 102-284 34-204 (390)
31 2q2e_B Type 2 DNA topoisomeras 98.6 1.2E-08 4.2E-13 114.4 2.9 158 102-285 39-212 (621)
32 1s16_A Topoisomerase IV subuni 98.6 1.2E-07 4.1E-12 101.0 9.1 160 102-285 33-204 (390)
33 1ei1_A DNA gyrase B, GYRB; ATP 98.4 3.1E-07 1E-11 97.9 7.3 158 100-285 34-206 (391)
34 4duh_A DNA gyrase subunit B; s 98.4 9.9E-07 3.4E-11 87.2 9.9 158 101-285 36-207 (220)
35 3cwv_A DNA gyrase, B subunit, 98.3 9.8E-07 3.3E-11 93.4 9.0 152 101-284 31-193 (369)
36 4emv_A DNA topoisomerase IV, B 98.3 1.7E-06 5.7E-11 86.0 9.5 157 102-286 42-214 (226)
37 1zxm_A TOPO IIA ATPase, DNA to 98.3 7.4E-07 2.5E-11 95.3 7.5 160 102-284 54-230 (400)
38 3lnu_A Topoisomerase IV subuni 98.0 8.9E-06 3.1E-10 87.1 7.9 159 101-285 51-223 (408)
39 3ttz_A DNA gyrase subunit B; p 97.8 2.3E-05 8E-10 76.2 6.6 140 101-285 32-180 (198)
40 1pvg_A DNA topoisomerase II; G 97.6 8.9E-05 3.1E-09 79.7 8.7 158 103-285 67-244 (418)
41 4ew8_A Sensor protein DIVL; si 97.3 8E-05 2.7E-09 72.1 2.6 49 103-167 158-206 (268)
42 1th8_A Anti-sigma F factor; SP 97.3 0.00013 4.5E-09 64.9 3.3 84 103-215 42-125 (145)
43 3jz3_A Sensor protein QSEC; he 97.1 5.7E-05 1.9E-09 70.7 -0.3 47 103-169 120-166 (222)
44 2btz_A Pyruvate dehydrogenase 97.1 0.00031 1.1E-08 73.6 4.8 117 102-255 233-349 (394)
45 2e0a_A Pyruvate dehydrogenase 97.0 0.00041 1.4E-08 72.7 5.0 118 102-255 232-349 (394)
46 1y8o_A [pyruvate dehydrogenase 96.9 0.00038 1.3E-08 73.7 3.7 119 102-255 255-373 (419)
47 3d36_A Sporulation kinase B; G 96.7 0.00073 2.5E-08 64.0 3.1 50 102-167 125-174 (244)
48 1id0_A PHOQ histidine kinase; 96.6 0.00071 2.4E-08 59.8 2.2 48 102-167 46-93 (152)
49 3a0y_A Sensor protein; ATP-LID 96.6 0.00076 2.6E-08 59.4 2.3 49 103-167 50-98 (152)
50 2q8g_A [pyruvate dehydrogenase 96.6 0.0011 3.7E-08 69.8 3.8 118 102-255 245-362 (407)
51 1b3q_A Protein (chemotaxis pro 96.5 0.002 6.8E-08 67.6 5.3 55 105-167 111-169 (379)
52 4gfh_A DNA topoisomerase 2; to 96.3 0.0077 2.6E-07 72.2 9.3 146 103-273 62-223 (1177)
53 3ehg_A Sensor kinase (YOCF pro 96.2 0.0054 1.9E-07 53.4 5.6 46 103-165 43-88 (128)
54 1ysr_A Sensor-type histidine k 96.1 0.0056 1.9E-07 54.1 5.3 50 103-169 49-98 (150)
55 3ehh_A Sensor kinase (YOCF pro 96.1 0.0059 2E-07 57.1 5.7 45 104-165 134-178 (218)
56 1i58_A Chemotaxis protein CHEA 96.1 0.0052 1.8E-07 56.7 5.1 57 104-167 51-110 (189)
57 3sl2_A Sensor histidine kinase 96.1 0.001 3.5E-08 60.9 0.1 49 103-167 46-96 (177)
58 2c2a_A Sensor histidine kinase 96.0 0.0017 5.8E-08 62.8 1.5 53 103-168 141-193 (258)
59 1r62_A Nitrogen regulation pro 95.8 0.005 1.7E-07 54.4 3.4 53 102-169 50-112 (160)
60 3zxq_A Hypoxia sensor histidin 95.8 0.005 1.7E-07 52.7 3.1 44 103-164 42-85 (124)
61 3zxo_A Redox sensor histidine 95.5 0.0042 1.4E-07 53.5 1.7 44 103-164 46-89 (129)
62 1gkz_A [3-methyl-2-oxobutanoat 95.0 0.012 4.3E-07 61.1 3.8 58 102-167 240-297 (388)
63 3a0r_A Sensor protein; four he 95.0 0.012 4.2E-07 58.6 3.4 49 103-167 247-295 (349)
64 1bxd_A ENVZ(290-450), protein 94.9 0.014 4.8E-07 52.2 3.2 47 103-167 50-96 (161)
65 4fpp_A Phosphotransferase; fou 90.0 0.21 7.1E-06 48.6 4.0 47 104-166 150-198 (247)
66 3ke6_A Protein RV1364C/MT1410; 76.6 2.6 8.8E-05 44.2 5.4 49 102-163 299-348 (399)
67 1ixm_A SPO0B, protein (sporula 72.5 2.2 7.7E-05 40.7 3.4 56 104-169 109-166 (192)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-124 Score=1048.34 Aligned_cols=479 Identities=52% Similarity=0.868 Sum_probs=401.0
Q ss_pred ccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEEC
Q 007926 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (584)
Q Consensus 77 ~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DN 156 (584)
.|+|.||||+++||+||+++||||+++|||||||||+||++|+|+.++++|+++ ...+++.|+|.+++++++|+|+||
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~--~~~~~~~I~I~~d~~~~~I~I~Dn 80 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQL--ETEPDLFIRITPKPEQKVLEIRDS 80 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTT--TTCCCCCEEEEEEGGGTEEEEEEC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhc--cCCCCcEEEEEEeCCCCEEEEEEC
Confidence 489999999999999999999999999999999999999999999999999987 566778999999988999999999
Q ss_pred CCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEe
Q 007926 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (584)
Q Consensus 157 GiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~ 236 (584)
|+|||++||.++|++||+||+++|+++++.+.+...||||||||||+||||++|+|+|+++++.++.|+++|++.|+|.+
T Consensus 81 GiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~ 160 (677)
T 2cg9_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTL 160 (677)
T ss_dssp SCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEE
T ss_pred CCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEee
Confidence 99999999999999999999999998887656778999999999999999999999999998789999999999999998
Q ss_pred CCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchH-HHHhhhhhhhcc
Q 007926 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDE-EEKAEKEEETEK 315 (584)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 315 (584)
++.+...++||+|+|||++++.+||+.++|+++|++||+||+|||+++..++.++++++++++++++ .++.+++.++++
T Consensus 161 ~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~~~~~~ 240 (677)
T 2cg9_A 161 DEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDK 240 (677)
T ss_dssp CCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC------------------------
T ss_pred cCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhcccccccccccccccc
Confidence 6433466899999999999999999999999999999999999999987665544443322110000 000000001112
Q ss_pred ccCCCcccccccccCCCcccceeccceeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceee
Q 007926 316 SESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEF 395 (584)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~k~v~~~~~~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f 395 (584)
+.++ +++++++++++++|++++++++|++||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|
T Consensus 241 ~~~~-~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~--~~pl~~~H~~veg~~~~ 317 (677)
T 2cg9_A 241 KPKL-EEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEF 317 (677)
T ss_dssp ----------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCC--SCCSEEEEEEECSSSCE
T ss_pred cccc-ccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCC--CCchheEEecccccceE
Confidence 2222 22121111345678888888999999999999999999999999999999999999 99999999999999999
Q ss_pred EEEEEeCCCCCcchhhhhhcccccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHH
Q 007926 396 KAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKK 475 (584)
Q Consensus 396 ~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~ 475 (584)
+||||||+++|+|+|++ ...+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.
T Consensus 318 ~~lLyiP~~ap~d~~~~--~~~~~~ikLYv~rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~ 395 (677)
T 2cg9_A 318 RAILFIPKRAPFDLFES--KKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKN 395 (677)
T ss_dssp EEEEEECSSCCC-----------CCSEEEETTEEEEECSTTTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHH
T ss_pred EEEEEEcCCCchhhhhh--hhccCCeEEEEeeeEeecChhhhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHH
Confidence 99999999999999974 2457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCCCc
Q 007926 476 LIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFYSL 555 (584)
Q Consensus 476 lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~~~ 555 (584)
|++|+++||.+||++ +++|++||++||++||+|+++|..||++|++||||+||+++..
T Consensus 396 l~kkvl~~l~~la~~----------------------~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~ 453 (677)
T 2cg9_A 396 IVKKLIEAFNEIAED----------------------SEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDE 453 (677)
T ss_dssp HHHHHHHHHHHHHSC----------------------SHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTS
T ss_pred HHHHHHHHHHHHHhC----------------------HHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCc
Confidence 999999999999975 3699999999999999999999999999999999999998777
Q ss_pred cceee------------ehhhhcC------CchhHhhhhhcCccccC
Q 007926 556 NLSYE------------YFYFSRI------SLPFVSASFSHGVCTLL 584 (584)
Q Consensus 556 ~~s~~------------~~y~~~~------~~p~~~~~~~~g~~~ll 584 (584)
++|++ +||++++ ++|+++++++||+|||+
T Consensus 454 ~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~~~kg~EVl~ 500 (677)
T 2cg9_A 454 LTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLF 500 (677)
T ss_dssp CBCSTTHHHHSCTTCCEEEEEECSCSTTTTTCGGGHHHHTTTCCEEE
T ss_pred eeeHHHHHHhccccCceEEEEeCCCHHHHHhCcHHHHHHhCCceEEE
Confidence 88883 5777753 59999999999999985
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=1.9e-108 Score=920.84 Aligned_cols=434 Identities=57% Similarity=0.964 Sum_probs=356.3
Q ss_pred ccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEEC
Q 007926 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (584)
Q Consensus 77 ~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DN 156 (584)
.|++.||+|+++||++|+++||+|+++|||||||||+||++|+|+.++++++++ ...+++.|+|.+++++++|+|+||
T Consensus 22 ~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~--~~a~~~~I~I~~d~~~~~I~I~Dn 99 (666)
T 2o1u_A 22 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLHVTDT 99 (666)
T ss_dssp ------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSS--SSCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhc--cCCCccEEEEEEeCCCCEEEEEEC
Confidence 488999999999999999999999999999999999999999999999999877 556678999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccchhHHHHhhhhc-----CCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCc
Q 007926 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA 231 (584)
Q Consensus 157 GiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~-----~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~ 231 (584)
|+|||++||.++|++||+||++.|+++++.+ .+...||||||||||+||||++|+|+|+++++.++.|+++| |.
T Consensus 100 GiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~g-g~ 178 (666)
T 2o1u_A 100 GVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NE 178 (666)
T ss_dssp SCCCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESS-SC
T ss_pred CCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeC-Ce
Confidence 9999999999999999999999999888753 46789999999999999999999999999877899999999 89
Q ss_pred eEEEeCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhhhhh
Q 007926 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (584)
Q Consensus 232 f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (584)
|+|.+.+++...++||+|+|+|+++..+|++.++|+++|++||+||++||+++++++.
T Consensus 179 ~ti~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~~~---------------------- 236 (666)
T 2o1u_A 179 FSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTG---------------------- 236 (666)
T ss_dssp CEEEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC------------------------
T ss_pred EEEEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEeccccc----------------------
Confidence 9998865334568999999999999999999999999999999999999999864310
Q ss_pred hhccccCCCcccccccccCCCcccceeccceeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeeccc
Q 007926 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (584)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg 391 (584)
+ + ++++++|+.+|+.+|||+|+++++++|+|.+||++++++| .+||+|+||++||
T Consensus 237 ---------~--------~------~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~--~~pl~~ih~~~eg 291 (666)
T 2o1u_A 237 ---------G--------G------GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKES--DDPMAYIHFTAEG 291 (666)
T ss_dssp ----------------------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTT--SCCSEEEEEEECS
T ss_pred ---------c--------c------cccccceEEEecCccccccCcccccHHHHHHHHhhhcccc--ccCeeEEEecccC
Confidence 0 0 0123589999999999999999999999999999999999 8999999999999
Q ss_pred ceeeEEEEEeCCCCCcchhhhhhcccccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHH
Q 007926 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (584)
Q Consensus 392 ~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~ 471 (584)
+++|+|+||+|+++|+|+|.+.+...+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++
T Consensus 292 ~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~LYVn~vfI~d~~~~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~ 371 (666)
T 2o1u_A 292 EVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKV 371 (666)
T ss_dssp SSCEEEEEEECSSCCC------------CEEEEETTEEEESCCCTTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHH
T ss_pred cEEEEEEEEcCCCCchhhhhhccccccCCeEEEEcCeEeeCchhhhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHH
Confidence 99999999999999999987522134789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccchhHHH-HHHHHhchhceeeeccChhhHHHHhccceeeec
Q 007926 472 IKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYT-KFWNEFGKSIKLGIIEDAANRNRLAKLLRFERY 550 (584)
Q Consensus 472 Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss 550 (584)
||+.|++|++++|.+|+++ +|+ +||++||++||+|+++|..||++|++||||+||
T Consensus 372 I~~~l~kkv~~~l~~l~~e------------------------~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss 427 (666)
T 2o1u_A 372 IRKKLVRKTLDMIKKIADE------------------------KYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSS 427 (666)
T ss_dssp HHHHHHHHHHHHHHHSCHH------------------------HHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEET
T ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeec
Confidence 9999999999999999865 899 999999999999999999999999999999999
Q ss_pred cCCCccceee------------ehhhhcC------CchhHhhhhhcCccccC
Q 007926 551 LFYSLNLSYE------------YFYFSRI------SLPFVSASFSHGVCTLL 584 (584)
Q Consensus 551 ~~~~~~~s~~------------~~y~~~~------~~p~~~~~~~~g~~~ll 584 (584)
+++..++|++ +||++++ ++|+++++++||+|||+
T Consensus 428 ~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~ 479 (666)
T 2o1u_A 428 HHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIY 479 (666)
T ss_dssp TSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHHTTCCCEE
T ss_pred CCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhhCcHHHHHHhCCceEEE
Confidence 9877788873 5777763 69999999999999985
No 3
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=5e-107 Score=896.51 Aligned_cols=431 Identities=42% Similarity=0.798 Sum_probs=393.0
Q ss_pred ccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEEC
Q 007926 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (584)
Q Consensus 77 ~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DN 156 (584)
.|++.||+++++||++|+++||+||++|||||||||+||++|+|+.++++|+++ ...+.+.|+|.+++++++|+|+||
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~I~~d~~~~~I~I~Dn 81 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISDN 81 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--CSCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhc--cCCCccEEEEEEeCCCcEEEEEEC
Confidence 489999999999999999999999999999999999999999999999999887 556678899999998999999999
Q ss_pred CCCCCHHHHHHHHHHHhccchhHHHHhhhhc--CCCCccccccceeeEEEeecCEEEEEEeeCC---CceeEEEecCCCc
Q 007926 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGA 231 (584)
Q Consensus 157 GiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~--~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~---~~~~~W~s~~~~~ 231 (584)
|+|||++||.++|++||+||+++|+++++.. .+...||||||||||+||||++|+|+|++++ +.++.|++++++.
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (559)
T 1y4s_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (559)
T ss_dssp SSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSE
T ss_pred CCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCe
Confidence 9999999999999999999999998777632 4678999999999999999999999999986 5689999999999
Q ss_pred eEEEeCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhhhhh
Q 007926 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (584)
Q Consensus 232 f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (584)
|++.+.+ ..++||+|+|+|+++..+||+.++|+++|++||+|+++||+++.+ + . + +
T Consensus 162 ~~i~~~~---~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~--e--~--~--------------~- 217 (559)
T 1y4s_A 162 YTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR--E--E--K--------------D- 217 (559)
T ss_dssp EEEEEEC---CCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEE--E--C--S--------------T-
T ss_pred eEEeECC---CCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec--c--c--c--------------c-
Confidence 9998752 457999999999999999999999999999999999999999641 0 0 0 0
Q ss_pred hhccccCCCcccccccccCCCcccceeccceeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeeccc
Q 007926 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (584)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg 391 (584)
+ + .+++|+.+|+.+|+|+|+|.++++++|.+||++++++| .+||+|+|+++||
T Consensus 218 ---------~--------~--------~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~--~~~l~~ih~~~eg 270 (559)
T 1y4s_A 218 ---------G--------E--------TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEG 270 (559)
T ss_dssp ---------T--------S--------CEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCS--SCEEEEEEECCCS
T ss_pred ---------c--------c--------cccceEEEeCCccceecCcccccHHHHHHHHHhhhhhh--hcCeEEEEeccCC
Confidence 0 0 03579999999999999999999999999999999999 8999999999999
Q ss_pred ceeeEEEEEeCCCCCcchhhhhhcccccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHH
Q 007926 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (584)
Q Consensus 392 ~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~ 471 (584)
+++|+|+||+|..+|+++|.+ ..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++
T Consensus 271 ~~~~~gll~~P~~~p~~~~~r---~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~ 347 (559)
T 1y4s_A 271 KQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRN 347 (559)
T ss_dssp SSCEEEEEEEESSCCTTCSSS---SCCCCEEEEETTEEEEEEEGGGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHH
T ss_pred ceEEEEEEEcCCcCcchhhhh---cccCCeEEEEcCEEeecchhhhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHH
Confidence 999999999999999999875 55789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeecc
Q 007926 472 IKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYL 551 (584)
Q Consensus 472 Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~ 551 (584)
||+.|++|++++|.+||++ +|++|++||++||++||+|+++|..||++|++||||+||+
T Consensus 348 I~~~l~kkv~~~l~~l~~~---------------------d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~ 406 (559)
T 1y4s_A 348 LRNALTKRVLQMLEKLAKD---------------------DAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTH 406 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------CHHHHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSS
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecC
Confidence 9999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CCC--ccceee------------ehhhhcC------CchhHhhhhhcCccccC
Q 007926 552 FYS--LNLSYE------------YFYFSRI------SLPFVSASFSHGVCTLL 584 (584)
Q Consensus 552 ~~~--~~~s~~------------~~y~~~~------~~p~~~~~~~~g~~~ll 584 (584)
+++ +++|+. +||++++ ++||++.+++||+|||+
T Consensus 407 ~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~ 459 (559)
T 1y4s_A 407 TDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLL 459 (559)
T ss_dssp CSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHHTCSSSHHHHHTTCCCEE
T ss_pred CCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEE
Confidence 764 677773 4777664 59999999999999985
No 4
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=6.1e-106 Score=897.29 Aligned_cols=431 Identities=42% Similarity=0.796 Sum_probs=376.0
Q ss_pred ccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEEC
Q 007926 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (584)
Q Consensus 77 ~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DN 156 (584)
.|+|.||+++++||++|+++||+|+++|||||||||+||++|+|+.++++|+++ ...+++.|+|.+++++++|+|+||
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~--~~a~~~~I~I~~d~~~~~I~I~Dn 81 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISDN 81 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTT--TTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccc--cCCCCcEEEEEEeCCCcEEEEEEC
Confidence 488999999999999999999999999999999999999999999999999877 556668899999998999999999
Q ss_pred CCCCCHHHHHHHHHHHhccchhHHHHhhhhc--CCCCccccccceeeEEEeecCEEEEEEeeCC---CceeEEEecCCCc
Q 007926 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGA 231 (584)
Q Consensus 157 GiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~--~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~---~~~~~W~s~~~~~ 231 (584)
|+|||++||.++|++||+||+++|+++++.. .+...||||||||||+||||++|+|+|++++ +.++.|++++++.
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (624)
T 2ioq_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (624)
T ss_dssp SCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSC
T ss_pred CCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCe
Confidence 9999999999999999999999998887642 4678999999999999999999999999986 4689999999999
Q ss_pred eEEEeCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhhhhh
Q 007926 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (584)
Q Consensus 232 f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (584)
|++.+.+ ..++||+|+|+|+++..+||+.++|+++|++||+|+++||+++.. + . +
T Consensus 162 ~~i~~~~---~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~~~--e--~--~---------------- 216 (624)
T 2ioq_A 162 YTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR--E--E--K---------------- 216 (624)
T ss_dssp CEEEEEC---CSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEEEE--E--E--C----------------
T ss_pred EEEEECC---CCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec--c--c--c----------------
Confidence 9998752 357999999999999999999999999999999999999999641 0 0 0
Q ss_pred hhccccCCCcccccccccCCCcccceeccceeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeeccc
Q 007926 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (584)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg 391 (584)
+ + + + +++|+.+|+++|+|+|+|.++++++|.+||++++++| .+||+|+|+++||
T Consensus 217 ---------~---------~--~---~-~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~--~~~l~~ih~~~eg 270 (624)
T 2ioq_A 217 ---------D---------G--E---T-VISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEG 270 (624)
T ss_dssp ---------S---------S--C---E-EEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCC--SCCSCCEEEEEES
T ss_pred ---------c---------c--c---c-ccceEEEeCCccceEecCccchHHHHHHHHHhhccch--hcCeEEEEecccc
Confidence 0 0 0 1 3589999999999999999999999999999999999 8999999999999
Q ss_pred ceeeEEEEEeCCCCCcchhhhhhcccccCeeEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHH
Q 007926 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (584)
Q Consensus 392 ~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~ 471 (584)
+++|+|+||+|..+|+++|.+ ..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++
T Consensus 271 ~~~~~gll~~P~~~p~~~~~r---~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~ 347 (624)
T 2ioq_A 271 KQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRN 347 (624)
T ss_dssp SSCEEEEEECCSSCCGGGSSS---SCCCCEEEEESSCEEEEEECSSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHH
T ss_pred eEEEEEEEEeCCcCccchhhh---cccCCeEEEECCEEeecchhccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHH
Confidence 999999999999999999875 55789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeecc
Q 007926 472 IKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYL 551 (584)
Q Consensus 472 Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~ 551 (584)
||+.|++|++++|.+|+++ +|++|++||++||++||+|+++|..||++|++||||+||+
T Consensus 348 I~~~l~kkv~~~l~~l~~~---------------------d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~ 406 (624)
T 2ioq_A 348 LRNALTKRVLQMLEKLAKD---------------------DAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTH 406 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------CHHHHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETT
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecC
Confidence 9999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CCC--ccceee------------ehhhhcC------CchhHhhhhhcCccccC
Q 007926 552 FYS--LNLSYE------------YFYFSRI------SLPFVSASFSHGVCTLL 584 (584)
Q Consensus 552 ~~~--~~~s~~------------~~y~~~~------~~p~~~~~~~~g~~~ll 584 (584)
+++ +++|++ +||++++ ++||++.+++||+|||+
T Consensus 407 ~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~ 459 (624)
T 2ioq_A 407 TDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLL 459 (624)
T ss_dssp SSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHHHCHHHHHHHHHTCCCEE
T ss_pred CCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEE
Confidence 764 677773 5777765 49999999999999985
No 5
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=4.2e-69 Score=544.86 Aligned_cols=212 Identities=47% Similarity=0.838 Sum_probs=194.4
Q ss_pred cccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceeeEEEEEeCCCCCcchhhhhhcccccCeeEEee
Q 007926 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (584)
Q Consensus 347 N~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvr 426 (584)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+++|++ ...+++|+||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYv~ 76 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDW--EDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFEN--KKKKNNIKLYVR 76 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCC----------CCCEEEEET
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCc--cCchheeeecccCCeeEEEEEEccCCCchhhhhh--hhhcCCeeEEEE
Confidence 457899999999999999999999999999 9999999999999999999999999999999974 245789999999
Q ss_pred eeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 007926 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 506 (584)
Q Consensus 427 rVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~ 506 (584)
||||||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|++|| +
T Consensus 77 rVfI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la-~---------------- 139 (268)
T 3pry_A 77 RVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA-E---------------- 139 (268)
T ss_dssp TEEEESCCGGGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-T----------------
T ss_pred EEEeecchhhhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH-h----------------
Confidence 99999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCCCccceee------------ehhhhcC------C
Q 007926 507 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFYSLNLSYE------------YFYFSRI------S 568 (584)
Q Consensus 507 ~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~~~~~s~~------------~~y~~~~------~ 568 (584)
++++|++||++||++||+|+++|..||++|++||||+||+++++.+|++ +||++++ +
T Consensus 140 -----d~e~Y~~f~~~fg~~lK~G~~eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~ 214 (268)
T 3pry_A 140 -----DKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVAN 214 (268)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHT
T ss_pred -----CHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHh
Confidence 7889999999999999999999999999999999999999877777774 5777654 6
Q ss_pred chhHhhhhhcCccccC
Q 007926 569 LPFVSASFSHGVCTLL 584 (584)
Q Consensus 569 ~p~~~~~~~~g~~~ll 584 (584)
+|+++++++||+|||+
T Consensus 215 sp~~E~~k~kg~EVL~ 230 (268)
T 3pry_A 215 SAFVERVRKRGFEVVY 230 (268)
T ss_dssp CHHHHHHHTTTCCEEE
T ss_pred ChHHHHHHHcCceEEE
Confidence 9999999999999985
No 6
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=3.9e-69 Score=545.48 Aligned_cols=215 Identities=34% Similarity=0.696 Sum_probs=186.1
Q ss_pred cccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceeeEEEEEeCCCCCcchhhhhhcccccCeeEEee
Q 007926 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (584)
Q Consensus 347 N~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvr 426 (584)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+|+|.+++...+++|+||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvr 78 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAY--DDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVK 78 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCC--SCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEET
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCc--cCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEe
Confidence 788999999999999999999999999999 999999999999999999999999999999987655566799999999
Q ss_pred eeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 007926 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 506 (584)
Q Consensus 427 rVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~ 506 (584)
||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|++||++
T Consensus 79 rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~~---------------- 142 (263)
T 1y6z_A 79 RVFINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKET---------------- 142 (263)
T ss_dssp TEEEESCGGGGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred eeEeecchhhhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHhh----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCCCccceee------------ehhhhcC------C
Q 007926 507 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFYSLNLSYE------------YFYFSRI------S 568 (584)
Q Consensus 507 ~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~~~~~s~~------------~~y~~~~------~ 568 (584)
++++|++||++||.+||+|+++|..||++|++||||+||+++++.+|++ +||++++ +
T Consensus 143 -----d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~ 217 (263)
T 1y6z_A 143 -----GGDKWTKFLNTFGKYLKIGVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQN 217 (263)
T ss_dssp -----CSHHHHHHHHHHHHHHHHHHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHT
T ss_pred -----hHHHHHHHHHHHhHHHccccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhc
Confidence 8899999999999999999999999999999999999999876778873 5777765 4
Q ss_pred chhHhhhhhcCccccC
Q 007926 569 LPFVSASFSHGVCTLL 584 (584)
Q Consensus 569 ~p~~~~~~~~g~~~ll 584 (584)
+|+++.+++||+|||+
T Consensus 218 sp~~E~~~~kg~EVL~ 233 (263)
T 1y6z_A 218 SPSLEKLKALNYDVLF 233 (263)
T ss_dssp CGGGHHHHHHTCCCEE
T ss_pred CcHHHHHHhCCCeEEE
Confidence 9999999999999985
No 7
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=3.3e-69 Score=543.91 Aligned_cols=212 Identities=46% Similarity=0.828 Sum_probs=191.4
Q ss_pred cccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceeeEEEEEeCCCCCcchhhhhhcccccCeeEEee
Q 007926 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (584)
Q Consensus 347 N~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvr 426 (584)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+++|++ ...+++|+||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvr 76 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVR 76 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC------CCEEEEET
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCc--cCCeeEEEeeccCcceeEEEEEecCCCchhhhhh--hhccCCeEEEEe
Confidence 789999999999999999999999999999 9999999999999999999999999999999975 244789999999
Q ss_pred eeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 007926 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 506 (584)
Q Consensus 427 rVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~ 506 (584)
||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||++
T Consensus 77 rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~d---------------- 140 (260)
T 1usu_A 77 RVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED---------------- 140 (260)
T ss_dssp TEEEESCCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred eeEeccchhhhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHhC----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCCCccceee------------ehhhhcC------C
Q 007926 507 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFYSLNLSYE------------YFYFSRI------S 568 (584)
Q Consensus 507 ~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~~~~~s~~------------~~y~~~~------~ 568 (584)
+++|++||++||++||+|+++|..||++|++||||+||++++..+|++ +||++++ +
T Consensus 141 ------~e~y~~f~~~fg~~lK~G~~eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~ 214 (260)
T 1usu_A 141 ------SEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEK 214 (260)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHT
T ss_pred ------HHHHHHHHHHHhhhhcchhccCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhc
Confidence 569999999999999999999999999999999999999876778873 5777765 5
Q ss_pred chhHhhhhhcCccccC
Q 007926 569 LPFVSASFSHGVCTLL 584 (584)
Q Consensus 569 ~p~~~~~~~~g~~~ll 584 (584)
+|+++++++||+|||+
T Consensus 215 sp~lE~~k~kg~EVL~ 230 (260)
T 1usu_A 215 SPFLDALKAKNFEVLF 230 (260)
T ss_dssp CTTHHHHHHTTCCEEE
T ss_pred ChHHHHHHhCCCeEEE
Confidence 9999999999999985
No 8
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=1.3e-68 Score=545.69 Aligned_cols=210 Identities=46% Similarity=0.833 Sum_probs=191.1
Q ss_pred cCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceeeEEEEEeCCCCCcchhhhhhcccccCeeEEeeee
Q 007926 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (584)
Q Consensus 349 ~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (584)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+|+|++ ...+++|+||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~--~~~~~~ikLYvrrV 76 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVRRV 76 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCC--SCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSS--CCCCCCCEEEETTE
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCc--ccCeeEEEEeccCCceeEEEEEecCCCcchhhhh--hhccCCeEEEEeee
Confidence 4799999999999999999999999999 9999999999999999999999999999999975 24478999999999
Q ss_pred eeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCC
Q 007926 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 508 (584)
Q Consensus 429 fI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~ 508 (584)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+
T Consensus 77 fI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~------------------- 137 (288)
T 1hk7_A 77 FITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAE------------------- 137 (288)
T ss_dssp EEESSCSSSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred EeecchhhhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHhh-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999973
Q ss_pred CccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCCCccceee------------ehhhhcC------Cch
Q 007926 509 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFYSLNLSYE------------YFYFSRI------SLP 570 (584)
Q Consensus 509 ~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~~~~~s~~------------~~y~~~~------~~p 570 (584)
++++|++||++||++||+|+++|..||++|++||||+||+++..++|++ |||++++ ++|
T Consensus 138 ---d~e~Y~kf~~~fg~~lK~Gi~eD~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp 214 (288)
T 1hk7_A 138 ---DSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSP 214 (288)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCG
T ss_pred ---CHHHHHHHHHHHhHHHhhhhcccHHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCH
Confidence 5779999999999999999999999999999999999999877788884 5777765 599
Q ss_pred hHhhhhhcCccccC
Q 007926 571 FVSASFSHGVCTLL 584 (584)
Q Consensus 571 ~~~~~~~~g~~~ll 584 (584)
+++++++||+|||+
T Consensus 215 ~lE~~k~kg~EVL~ 228 (288)
T 1hk7_A 215 FLDALKAKNFEVLF 228 (288)
T ss_dssp GGHHHHTTTCCCEE
T ss_pred HHHHHHHCCCEEEE
Confidence 99999999999985
No 9
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=1.3e-67 Score=567.00 Aligned_cols=217 Identities=45% Similarity=0.818 Sum_probs=190.3
Q ss_pred eeEEecccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceeeEEEEEeCCCCCcchhhhhhcccccCe
Q 007926 342 EWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANL 421 (584)
Q Consensus 342 ~we~iN~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f~~llfiP~~~p~~~~~~~~~~~~~~i 421 (584)
+|++||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+++|++ ...+++|
T Consensus 12 ~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~--~~~~~~i 87 (444)
T 3hjc_A 12 ENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDW--EDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEP--NKKRNNI 87 (444)
T ss_dssp -------CCCGGGSCGGGCCHHHHHHHHHHTSSCC--SCCSEEEEEEECSSSCEEEEEEECSSCCC----C--CCCCCSE
T ss_pred CceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCc--cCCceeEEEEecccceeeEEEecCCCCCcchhhh--hhhcCCe
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999973 2457899
Q ss_pred eEEeeeeeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 007926 422 KLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKK 501 (584)
Q Consensus 422 kLYvrrVfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~lv~k~l~~l~~la~~~~~~~~~~~~~ 501 (584)
+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+|+ +
T Consensus 88 kLYv~rVfI~D~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la-~----------- 155 (444)
T 3hjc_A 88 KLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVA-E----------- 155 (444)
T ss_dssp EEEETTEEEESCCGGGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-----------
T ss_pred eEEEeeeEeecchhhhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH-h-----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred cccccCCCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCCCccceee------------ehhhhcC--
Q 007926 502 DVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFYSLNLSYE------------YFYFSRI-- 567 (584)
Q Consensus 502 ~~~~~~~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~~~~~s~~------------~~y~~~~-- 567 (584)
++++|++||++||++||+|+++|..||++|++||||+||++++.++|++ |||+++.
T Consensus 156 ----------d~e~Y~kFw~~fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~ 225 (444)
T 3hjc_A 156 ----------NKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSK 225 (444)
T ss_dssp ----------SHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCH
T ss_pred ----------CHHHHHHHHHHHhHHHhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCH
Confidence 5789999999999999999999999999999999999999877777774 5777764
Q ss_pred ----CchhHhhhhhcCccccC
Q 007926 568 ----SLPFVSASFSHGVCTLL 584 (584)
Q Consensus 568 ----~~p~~~~~~~~g~~~ll 584 (584)
++|+++++++||+|||+
T Consensus 226 ~~~~~sp~lE~~k~kG~EVL~ 246 (444)
T 3hjc_A 226 KKLETSPFIEQARRRGLEVLF 246 (444)
T ss_dssp HHHHTCGGGHHHHHHTCCEEE
T ss_pred HHHHhChHHHHHHhCCcEEEE
Confidence 59999999999999985
No 10
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=2.4e-67 Score=539.59 Aligned_cols=210 Identities=40% Similarity=0.793 Sum_probs=199.1
Q ss_pred cCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceeeEEEEEeCCCCCcchhhhhhcccccCeeEEeeee
Q 007926 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (584)
Q Consensus 349 ~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (584)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+++|++ ..+++|+||||||
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~---~~~~~ikLYvrrV 76 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRV 76 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCC--SCCSEEEEEEECSSSCEEEEEEECSSCCTTTTST---TCCCSEEEEETTE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCc--cCcceeEEeccccccceeEEEEecCCCCchhhhh---hccCCeEEEEece
Confidence 5799999999999999999999999999 8999999999999999999999999999999875 4478999999999
Q ss_pred eeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCC
Q 007926 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 508 (584)
Q Consensus 429 fI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~ 508 (584)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||++
T Consensus 77 fI~D~~eeLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~~------------------ 138 (303)
T 2gq0_A 77 FIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKD------------------ 138 (303)
T ss_dssp EEEEEEGGGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred EeecchhhhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCC--Cccceee------------ehhhhcC------C
Q 007926 509 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFY--SLNLSYE------------YFYFSRI------S 568 (584)
Q Consensus 509 ~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~--~~~~s~~------------~~y~~~~------~ 568 (584)
++++|++||++||++||+|+++|..||++|++||||+||+++ ++.+|++ |||++++ +
T Consensus 139 ---d~e~Y~kF~~~fg~~lK~Gi~eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~ 215 (303)
T 2gq0_A 139 ---DAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKS 215 (303)
T ss_dssp ---CHHHHHHHHHHHHHHHTTHHHHCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhc
Confidence 899999999999999999999999999999999999999976 4677774 5777754 5
Q ss_pred chhHhhhhhcCccccC
Q 007926 569 LPFVSASFSHGVCTLL 584 (584)
Q Consensus 569 ~p~~~~~~~~g~~~ll 584 (584)
+|+++++++||+|||+
T Consensus 216 sp~lE~~k~kG~EVL~ 231 (303)
T 2gq0_A 216 SPHLELLRKKGIEVLL 231 (303)
T ss_dssp CGGGHHHHHHTCCEEE
T ss_pred ChHHHHHHHCCCeEEE
Confidence 9999999999999985
No 11
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=5.9e-67 Score=533.34 Aligned_cols=265 Identities=53% Similarity=0.847 Sum_probs=229.6
Q ss_pred hhhhcccccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCcc
Q 007926 70 KRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK 149 (584)
Q Consensus 70 ~~~~~~~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~ 149 (584)
..+|+...+++.||||+++||+||+++||+|+++|||||||||+|||+|+||.++++|+++ ...+++.|+|.+|++++
T Consensus 16 ~~~~~~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~--~~~~~l~I~I~~d~~~~ 93 (281)
T 3peh_A 16 FQGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL--GEEKKLEIRISANKEKN 93 (281)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGG--TTCCCCCEEEEEETTTT
T ss_pred HHHHhhccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhc--cCCCceEEEEEEcCCCc
Confidence 3467777899999999999999999999999999999999999999999999999999987 66788999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhh-cCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecC
Q 007926 150 ILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT-SGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKA 228 (584)
Q Consensus 150 ~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~-~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~ 228 (584)
+|+|.|||+|||+++|.++|++||+||++.|+++++. +.+..+||||||||||+||||++|+|+|+++++.+|.|+|++
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g 173 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTA 173 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEET
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECC
Confidence 9999999999999999999999999999999999876 467889999999999999999999999999988899999999
Q ss_pred CCceEEEeCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhh
Q 007926 229 DGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAE 308 (584)
Q Consensus 229 ~~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (584)
+|.|+|.++++++..++||+|+|||++++.+||+.++|+++|++||+||+|||+|+.+++.+++++++|++ +
T Consensus 174 ~g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~----~---- 245 (281)
T 3peh_A 174 DAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAK----D---- 245 (281)
T ss_dssp TSCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHH----H----
T ss_pred CccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhh----h----
Confidence 99999999765567889999999999999999999999999999999999999999999888877553210 0
Q ss_pred hhhhhccccCCCcccccccccCCCcccceeccceeEEec
Q 007926 309 KEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLN 347 (584)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~we~iN 347 (584)
+.++++++++ ++++++ ++++++|||++++|+|+.+|
T Consensus 246 -~~~~~~~~~~-e~~~~~-~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 246 -MVNDPNYDSV-KVEETD-DPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp -HTTCTTSSEE-EECCCC-CTTCCEEEEEEEEEEEEECC
T ss_pred -cccccccccc-cccccc-ccccCCcceEEEEEEeEecC
Confidence 0011233333 333322 34567899999999999998
No 12
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=2.2e-65 Score=548.14 Aligned_cols=211 Identities=48% Similarity=0.857 Sum_probs=183.3
Q ss_pred ccCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceeeEEEEEeCCCCCcchhhhhhcccccCeeEEeee
Q 007926 348 DVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRR 427 (584)
Q Consensus 348 ~~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrr 427 (584)
.++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+++|++ ...+++|+|||||
T Consensus 2 ~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvrr 77 (448)
T 3q6m_A 2 ATKPIWTRNPDDITNEEYGEFYKSLTNDW--EDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFEN--RKKKNNIKLYVRR 77 (448)
T ss_dssp --CCGGGSCTTSCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCC-----------CCEEEEETT
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHhcCCc--cCChheeeeccCCCeeeEEEEEccCCCchhhhhh--hhhccceeEEeee
Confidence 36899999999999999999999999999 9999999999999999999999999999999964 2457899999999
Q ss_pred eeeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccC
Q 007926 428 VFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFS 507 (584)
Q Consensus 428 VfI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~ 507 (584)
|||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+|+ +
T Consensus 78 VfI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la-~----------------- 139 (448)
T 3q6m_A 78 VFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA-E----------------- 139 (448)
T ss_dssp EEEESCCTTSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHT-S-----------------
T ss_pred eEEecchhhhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH-h-----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCCCccceee------------ehhhhcC------Cc
Q 007926 508 DDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFYSLNLSYE------------YFYFSRI------SL 569 (584)
Q Consensus 508 ~~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~~~~~s~~------------~~y~~~~------~~ 569 (584)
++++|++||++||++||+|+++|..||++|++||||+||++++.++|++ |||+++. ++
T Consensus 140 ----d~e~Y~~f~~~fg~~lK~Gi~eD~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~s 215 (448)
T 3q6m_A 140 ----DKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANS 215 (448)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTS
T ss_pred ----CHHHHHHHHHHHhHHHHhhhcccHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhC
Confidence 7889999999999999999999999999999999999999887778774 5777654 69
Q ss_pred hhHhhhhhcCccccC
Q 007926 570 PFVSASFSHGVCTLL 584 (584)
Q Consensus 570 p~~~~~~~~g~~~ll 584 (584)
|+++++++||+|||+
T Consensus 216 p~lE~~k~kG~EVL~ 230 (448)
T 3q6m_A 216 AFVERLRKHGLEVIY 230 (448)
T ss_dssp GGGHHHHHHTCCEEE
T ss_pred hHHHHHHHCCCEEEE
Confidence 999999999999985
No 13
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-65 Score=544.55 Aligned_cols=210 Identities=46% Similarity=0.836 Sum_probs=197.6
Q ss_pred cCcccccCCCCCCHHHHHHHHHHhhcCCCCCCCceeeeeecccceeeEEEEEeCCCCCcchhhhhhcccccCeeEEeeee
Q 007926 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (584)
Q Consensus 349 ~~piW~r~~~~vt~eey~~Fyk~l~~~~~~~~PL~~~hf~~eg~v~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (584)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+++|++ ...+++|+||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvrrV 76 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVRRV 76 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSS--CCCCCCCEEEETTE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCC--cCCeeEEEeccCCCcceeEEEEecCCCchhhhhh--hhccCCeEEEEeee
Confidence 4799999999999999999999999999 9999999999999999999999999999999975 24478999999999
Q ss_pred eeccccchhhhhhhhcccccccCCCcCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCC
Q 007926 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 508 (584)
Q Consensus 429 fI~d~~~~llP~yl~FvkGVVDSddLpLNvSRE~lQ~~~~l~~Irk~lv~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~ 508 (584)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+|+++
T Consensus 77 fI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~~------------------ 138 (405)
T 2cge_A 77 FITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED------------------ 138 (405)
T ss_dssp EEESSCSSSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------
T ss_pred EecCchhhhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhhC------------------
Confidence 99999999999999999999999999999999999999999999999999999999999864
Q ss_pred CccchhHHHHHHHHhchhceeeeccChhhHHHHhccceeeeccCCCccceee------------ehhhhcC------Cch
Q 007926 509 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFERYLFYSLNLSYE------------YFYFSRI------SLP 570 (584)
Q Consensus 509 ~~~~~~~y~kf~~~fg~~lK~G~~eD~~nr~~la~Llrf~ss~~~~~~~s~~------------~~y~~~~------~~p 570 (584)
+++|++||++||.+||+|+++|..||++|++||||+||++++.++|++ |||++++ ++|
T Consensus 139 ----~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp 214 (405)
T 2cge_A 139 ----SEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSP 214 (405)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCT
T ss_pred ----HHHHHHHHHHhhhhhcchhccCHHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCh
Confidence 579999999999999999999999999999999999999877778873 5777765 599
Q ss_pred hHhhhhhcCccccC
Q 007926 571 FVSASFSHGVCTLL 584 (584)
Q Consensus 571 ~~~~~~~~g~~~ll 584 (584)
+++.+++||+|||+
T Consensus 215 ~~E~~k~kG~EVL~ 228 (405)
T 2cge_A 215 FLDALKAKNFEVLF 228 (405)
T ss_dssp THHHHHHHTCCEEE
T ss_pred HHHHHHhCCCEEEE
Confidence 99999999999985
No 14
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=2.5e-61 Score=490.81 Aligned_cols=262 Identities=58% Similarity=0.960 Sum_probs=205.8
Q ss_pred ccccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEE
Q 007926 75 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIR 154 (584)
Q Consensus 75 ~~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~ 154 (584)
...++|.||+++++||++|+++||+|+++|||||||||+||++|+||.++++|+++ ...+.+.|+|.++.+.++|+|.
T Consensus 3 ~~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~i~~d~~~~~l~I~ 80 (269)
T 1qy5_A 3 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLHVT 80 (269)
T ss_dssp -CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTT--TTCCCCCEEEEEETTTTEEEEE
T ss_pred CcccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhc--cCCCceEEEEEEcCCceEEEEE
Confidence 45689999999999999999999999999999999999999999999999999987 5667789999999989999999
Q ss_pred ECCCCCCHHHHHHHHHHHhccchhHHHHhhhhc-----CCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCC
Q 007926 155 DRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD 229 (584)
Q Consensus 155 DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~-----~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~ 229 (584)
|||+|||+++|.++|++||+||++.|+++++.+ .+..+||||||||||+||||++|+|.|+++++.++.|++++
T Consensus 81 DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~g- 159 (269)
T 1qy5_A 81 DTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS- 159 (269)
T ss_dssp ECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECS-
T ss_pred ECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeC-
Confidence 999999999999999999999999999888754 57789999999999999999999999999887899999999
Q ss_pred CceEEEeCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCCCCCCCCchHHHHhhh
Q 007926 230 GAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEK 309 (584)
Q Consensus 230 ~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (584)
|.|+|.+.+++...++||+|+|+|+++..+|++.++|+++|++||+||+|||+|+.+++++++++++++++++++
T Consensus 160 g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~----- 234 (269)
T 1qy5_A 160 NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEE----- 234 (269)
T ss_dssp SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC---------------------
T ss_pred CEEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhc-----
Confidence 899998864334568999999999999999999999999999999999999999999888777766543321111
Q ss_pred hhhhccccCCCcccccccccCCCcccceeccceeEEec
Q 007926 310 EEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLN 347 (584)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~we~iN 347 (584)
+.+.++..++ ++ +++++++++|++++++|+|+.+|
T Consensus 235 ~~~~~~~~~~-~~--~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 235 KEDSDDEAAV-EE--EEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp ----------------------------CCCEEEEECC
T ss_pred cccccccccc-cc--ccccccccCCceEEEEeeeEecC
Confidence 0001112222 11 12233567899999999999998
No 15
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=7.6e-60 Score=474.07 Aligned_cols=209 Identities=57% Similarity=0.945 Sum_probs=190.8
Q ss_pred ccccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccC-----------------------
Q 007926 75 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLG----------------------- 131 (584)
Q Consensus 75 ~~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g----------------------- 131 (584)
...|++.||||+++||+||+|+||||++||||||||||+|||+|+| +++++|.++|
T Consensus 22 ~~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (272)
T 3ied_A 22 SPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVN 100 (272)
T ss_dssp EECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC-------------------
T ss_pred cccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhccccccccccccccccccccccc
Confidence 3468999999999999999999999999999999999999999999 8888776441
Q ss_pred ----------C--CCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhc-CCCCccccccc
Q 007926 132 ----------E--GDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-GDLNLIGQFGV 198 (584)
Q Consensus 132 ----------~--~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~-~~~~~IGqFGI 198 (584)
+ ...+++.|+|.+|+++++|+|.|||+|||++||.++|++||+||+++|+++++.+ .+..+||||||
T Consensus 101 ~~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGV 180 (272)
T 3ied_A 101 ESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGV 180 (272)
T ss_dssp -------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCC
T ss_pred cccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccc
Confidence 0 2345689999999999999999999999999999999999999999999998765 57889999999
Q ss_pred eeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEeCC-----CCCCCCCCcEEEEEeccccccccChHHHHHHHHHH
Q 007926 199 GFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDT-----WNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKY 273 (584)
Q Consensus 199 GF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~-----~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkky 273 (584)
||||+||||++|+|+|+ +++.+|.|+|+++|+|+|.+++ .++..+|||+|+||||+++.+||++++|+++|++|
T Consensus 181 GFySaFmVAdkV~V~Sk-~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likky 259 (272)
T 3ied_A 181 GFYSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKY 259 (272)
T ss_dssp GGGGGGGTEEEEEEEEE-SSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHH
T ss_pred eeheeeccCCEEEEEEc-CCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHH
Confidence 99999999999999999 6778999999999999999875 34567899999999999999999999999999999
Q ss_pred hCCCCcceEeee
Q 007926 274 SEFINFPIYIWA 285 (584)
Q Consensus 274 s~fi~~PI~l~~ 285 (584)
|+||+|||+||.
T Consensus 260 s~fi~~PI~l~~ 271 (272)
T 3ied_A 260 SEFIKFPIEIWS 271 (272)
T ss_dssp CTTCCSCEEECC
T ss_pred HhCCCCCeEEEe
Confidence 999999999985
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=7.3e-59 Score=464.88 Aligned_cols=211 Identities=59% Similarity=0.964 Sum_probs=198.1
Q ss_pred cccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEE
Q 007926 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (584)
Q Consensus 76 ~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~D 155 (584)
..+++.||||+++||++|+++||+|+++|||||||||+||++|+|+.++++|..+ ...+++.|+|.+|+++++|+|.|
T Consensus 15 ~~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~I~~d~~~~~L~I~D 92 (239)
T 3nmq_A 15 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKL--DSGKELKIDIIPNPQERTLTLVD 92 (239)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--TTCCCCCEEEEEETTTTEEEEEE
T ss_pred cceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhc--cCCCceEEEEEEeCCccEEEEEe
Confidence 3689999999999999999999999999999999999999999999999999877 56678899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEE
Q 007926 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAIS 235 (584)
Q Consensus 156 NGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~ 235 (584)
||+|||++||.++|++||+||++.|+++++.+.+..+||||||||||+|||||+|+|+|+++++.++.|+|++++.|+|.
T Consensus 93 nGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~fti~ 172 (239)
T 3nmq_A 93 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVR 172 (239)
T ss_dssp CSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcEEEE
Confidence 99999999999999999999999999988765678899999999999999999999999998888999999999999999
Q ss_pred eCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeeccee
Q 007926 236 EDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEV 289 (584)
Q Consensus 236 ~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~ 289 (584)
+++ ++..+|||+|+|||++++.+|+++++|+++|++||+||+|||+++.++++
T Consensus 173 ~~~-~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~~~~ 225 (239)
T 3nmq_A 173 ADH-GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER 225 (239)
T ss_dssp ECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCCSCC
T ss_pred ecC-CCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeeeeec
Confidence 874 45678999999999999999999999999999999999999999987644
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=1.5e-54 Score=437.67 Aligned_cols=237 Identities=54% Similarity=0.898 Sum_probs=194.9
Q ss_pred cccCCCCCCCCCchhhhhhhhhhhhhhhhcccccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhc
Q 007926 45 EKLGAVPNGLSTDSDVAKREAESISKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSL 124 (584)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sl 124 (584)
.+++..+++..++.++++. +..|++.||+|+++||++|+++||+++++|||||||||+||++|+||.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~-----------~~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l 84 (256)
T 3o0i_A 16 PRGSHMPEETQTQDQPMEE-----------EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 84 (256)
T ss_dssp -------------------------------CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCcccccccccccc-----------ccceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhc
Confidence 3455556665566555433 34689999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEE
Q 007926 125 TDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVY 204 (584)
Q Consensus 125 td~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F 204 (584)
++|..+ ...+++.|+|.++.+.++|+|.|||+|||++||.++|++||+||++.|.+.++.+.+...|||||+||||+|
T Consensus 85 ~~~~~~--~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f 162 (256)
T 3o0i_A 85 TDPSKL--DSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAY 162 (256)
T ss_dssp HCGGGG--TTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGG
T ss_pred cCchhc--cCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhh
Confidence 999877 566788999999999999999999999999999999999999999999888764456789999999999999
Q ss_pred eecCEEEEEEeeCCCceeEEEecCCCceEEEeCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEee
Q 007926 205 LVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIW 284 (584)
Q Consensus 205 mVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~ 284 (584)
|||++|+|+|+++++.++.|++++++.|+|.+.+ +...++||+|+|+||.+..+|++.++|+++|++||+||++||+++
T Consensus 163 ~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~v~~~~-~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~ 241 (256)
T 3o0i_A 163 LVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 241 (256)
T ss_dssp GTEEEEEEEEECTTSCEEEEEECSTTEEEEEECC-SSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEEC
T ss_pred ccCCeEEEEEcCCCCceEEEEEeccceEEEeeCC-CCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEe
Confidence 9999999999998888999999999999999864 345689999999999999999999999999999999999999999
Q ss_pred ecceeeccCCC
Q 007926 285 ASKEVDVDVPT 295 (584)
Q Consensus 285 ~~~~~~~~~~~ 295 (584)
.++++++++++
T Consensus 242 ~~~~~~~~~~~ 252 (256)
T 3o0i_A 242 VEKERDKEVSD 252 (256)
T ss_dssp CC---------
T ss_pred eeeeecccCCC
Confidence 88766555543
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=1.6e-52 Score=417.13 Aligned_cols=216 Identities=59% Similarity=0.969 Sum_probs=193.2
Q ss_pred cccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEE
Q 007926 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (584)
Q Consensus 76 ~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~D 155 (584)
..+++.||+|+++||++|+++||+++.+|||||||||+||++++|+.+++++..+ ...+.+.|+|..+.+..+|+|.|
T Consensus 8 ~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~--~~~~~i~I~I~~d~~~~~i~V~D 85 (228)
T 3t0h_A 8 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKL--DSGKELHINLIPNKQDRTLTIVD 85 (228)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGG--TTCCCCCEEEEEETTTTEEEEEE
T ss_pred cccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccc--cCCCceEEEEEEeCCeeEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999876 56677899999998899999999
Q ss_pred CCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEE
Q 007926 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAIS 235 (584)
Q Consensus 156 NGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~ 235 (584)
||+||++++|..+|++||+|+++.|.+.++.+.+...||+||+||+|+|+||++|+|+|+++++.++.|++++++.|++.
T Consensus 86 nG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~v~ 165 (228)
T 3t0h_A 86 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVR 165 (228)
T ss_dssp CSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEE
T ss_pred CCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEEEe
Confidence 99999999999999999999999998877644567899999999999999999999999998778999999999999998
Q ss_pred eCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceeeccCC
Q 007926 236 EDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVP 294 (584)
Q Consensus 236 ~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~~~~~ 294 (584)
+.+ +...++||+|+|+||++..+|++.++|+++|++||+||++||+++.+++.+++++
T Consensus 166 ~~~-~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~ 223 (228)
T 3t0h_A 166 TDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVS 223 (228)
T ss_dssp ECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC--------
T ss_pred ecC-CCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCC
Confidence 864 2356899999999999999999999999999999999999999998776555543
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=2.7e-52 Score=417.01 Aligned_cols=211 Identities=62% Similarity=1.002 Sum_probs=179.2
Q ss_pred cccccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEE
Q 007926 74 RNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSI 153 (584)
Q Consensus 74 ~~~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I 153 (584)
.+..+++.||+++++|+++|+++||++|.+|||||||||+||++++|+.++++|+++ ...+++.|+|.++.+.++|+|
T Consensus 6 ~~~~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~--~~~~~~~I~i~~d~~~~~i~I 83 (236)
T 2gqp_A 6 REKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLHV 83 (236)
T ss_dssp HHTTTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTT--TTCCCCCEEEEEETTTTEEEE
T ss_pred cccccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccc--cCCCceEEEEEEcCCCCEEEE
Confidence 345689999999999999999999999999999999999999999999999999877 556678899999988899999
Q ss_pred EECCCCCCHHHHHHHHHHHhccchhHHHHhhhhc-----CCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecC
Q 007926 154 RDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKA 228 (584)
Q Consensus 154 ~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~-----~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~ 228 (584)
.|||+||+++||.++|++||+||++.|+++++.. .+...||||||||||+||+|++|+|.|++.++.++.|++++
T Consensus 84 ~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~g 163 (236)
T 2gqp_A 84 TDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS 163 (236)
T ss_dssp EECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESS
T ss_pred EECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeC
Confidence 9999999999999999999999999998877643 46679999999999999999999999999877899999998
Q ss_pred CCceEEEeCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecc
Q 007926 229 DGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASK 287 (584)
Q Consensus 229 ~~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~ 287 (584)
|.|++.+.+.+....+||+|+|+|+++..+|++.++|+++|++||+|++|||++++++
T Consensus 164 -g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 164 -NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp -SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred -CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 8999988643334679999999999999999999999999999999999999998753
No 20
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=1.4e-48 Score=385.53 Aligned_cols=211 Identities=59% Similarity=0.959 Sum_probs=192.8
Q ss_pred ccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEEC
Q 007926 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (584)
Q Consensus 77 ~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DN 156 (584)
.|++.||+++++|+++|+++||+++.+|||||||||+||++++|+.++++++.+ ...+++.|+|..+.+..+|+|.||
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~--~~~~~i~I~i~~~~~~~~i~I~Dn 80 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQL--ETEPDLFIRITPKPEQKVLEIRDS 80 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGG--GGCCCCCEEEEEEGGGTEEEEEEC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhc--cCCCcEEEEEEECCCCCEEEEEEc
Confidence 589999999999999999999999999999999999999999999999999876 445677888888888889999999
Q ss_pred CCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEe
Q 007926 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (584)
Q Consensus 157 GiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~ 236 (584)
|+||++++|.++|++||+||++.|.++++...+...||+|||||||+|++|++|+|.|++.++.++.|++++++.|++.+
T Consensus 81 G~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~ 160 (220)
T 2wer_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTL 160 (220)
T ss_dssp SCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEE
T ss_pred CCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeec
Confidence 99999999999999999999999998887556778999999999999999999999999987779999999999999987
Q ss_pred CCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeeccee
Q 007926 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEV 289 (584)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~ 289 (584)
.+.+....+||+|+|+|++++.+|++.++|+++|++|++|+++||+++.+++.
T Consensus 161 ~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~~ 213 (220)
T 2wer_A 161 DEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEV 213 (220)
T ss_dssp CSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCCCCC
T ss_pred ccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 64223567999999999999999999999999999999999999999986543
No 21
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=2.7e-48 Score=394.18 Aligned_cols=212 Identities=59% Similarity=0.978 Sum_probs=192.1
Q ss_pred cccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEE
Q 007926 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (584)
Q Consensus 76 ~~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~D 155 (584)
..+++.||+++++|+++|+++||++|.+|||||||||+||++++|+.++++++++ ...+.+.|+|..+.+..+|+|.|
T Consensus 44 ~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~--~~~~~i~I~i~~d~~~~~I~I~D 121 (264)
T 1yc1_A 44 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKL--DSGKELHINLIPNKQDRTLTIVD 121 (264)
T ss_dssp CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--GGCCCCCEEEEEETTTTEEEEEE
T ss_pred cceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCcccc--CCCCeEEEEEEECCCeeEEEEEE
Confidence 3589999999999999999999999999999999999999999999999998876 44567888888888889999999
Q ss_pred CCCCCCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEE
Q 007926 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAIS 235 (584)
Q Consensus 156 NGiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~ 235 (584)
||+||+++||.++|++||+||++.|+++++...+...||+|||||||+|++|++|+|.|++.++.++.|++.+++.|++.
T Consensus 122 nG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~ 201 (264)
T 1yc1_A 122 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVR 201 (264)
T ss_dssp CSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEE
T ss_pred CCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEe
Confidence 99999999999999999999999998888755577899999999999999999999999998777999999998999998
Q ss_pred eCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeeecceee
Q 007926 236 EDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVD 290 (584)
Q Consensus 236 ~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~~~~~~ 290 (584)
+.+ +....+||+|+|+|+++..+|++.++|+++|++||+|+++||+++++++.+
T Consensus 202 ~~~-~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~~ 255 (264)
T 1yc1_A 202 TDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERD 255 (264)
T ss_dssp ECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECCCC---
T ss_pred ecC-CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEeeccccc
Confidence 864 234679999999999999999999999999999999999999999876443
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=5.1e-43 Score=349.56 Aligned_cols=204 Identities=46% Similarity=0.820 Sum_probs=183.2
Q ss_pred ccceeeeechhchHhHHhhcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEEC
Q 007926 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (584)
Q Consensus 77 ~e~~~Fqadv~rLl~lL~~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DN 156 (584)
.|++.||+++++|+++|+++||++|.+|||||||||+||++++|+.+++++++. .....+.|+|.++.++.+|+|.||
T Consensus 24 ~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~--~~~~~~~I~i~~~~~~~~i~I~Dn 101 (235)
T 2ior_A 24 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISDN 101 (235)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGG--TTCCCCCEEEEEETTTTEEEEEEC
T ss_pred cccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCcccc--CCCceEEEEEEEcCCceEEEEEEC
Confidence 588999999999999999999999999999999999999999999999998876 445567888888888889999999
Q ss_pred CCCCCHHHHHHHHHHHhccchhHHHHhhhh--cCCCCccccccceeeEEEeecCEEEEEEeeCC---CceeEEEecCCCc
Q 007926 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQT--SGDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGA 231 (584)
Q Consensus 157 GiGMT~eeL~~~LgtIa~Sg~~~f~~~l~~--~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~---~~~~~W~s~~~~~ 231 (584)
|+||+++||.++|++||+|+++.|.++++. ..+...+|+|||||||+|++|++|+|.|++.+ ..++.|.+++++.
T Consensus 102 G~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~ 181 (235)
T 2ior_A 102 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 181 (235)
T ss_dssp SSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSE
T ss_pred CCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCc
Confidence 999999999999999999999999876541 12357899999999999999999999999975 4589999999899
Q ss_pred eEEEeCCCCCCCCCCcEEEEEeccccccccChHHHHHHHHHHhCCCCcceEeee
Q 007926 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWA 285 (584)
Q Consensus 232 f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~lk~lvkkys~fi~~PI~l~~ 285 (584)
|++.+.+ ...+||+|+|+|+++..+|++.++|+++|++|++|+++||+++.
T Consensus 182 ~~i~~~~---~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 182 YTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp EEEEEEC---CCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred EEEeeCC---CCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 9998742 45799999999999999999999999999999999999999975
No 23
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.72 E-value=6.8e-18 Score=176.06 Aligned_cols=153 Identities=20% Similarity=0.336 Sum_probs=108.3
Q ss_pred hcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHHHHHh
Q 007926 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIA 173 (584)
Q Consensus 95 ~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~eeL~~~LgtIa 173 (584)
-....++..+|+|||+||+||++ . .|.|.++.++ ..|+|.|||+||+++++...+..++
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a------------------~--~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ 78 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGA------------------T--RIDIDIERGGAKLIRIRDNGCGIKKDELALALARHA 78 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTC------------------S--EEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTC
T ss_pred CCchhCHHHHHHHHHHHHHHCCC------------------C--eEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccc
Confidence 33456899999999999999963 1 3555544433 6899999999999999999998888
Q ss_pred ccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCC-ceeEEEecCCC-ceEEEeCCCCCCCCCCcEEEE
Q 007926 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADG-AFAISEDTWNEPLGRGTEIRL 251 (584)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~-~~~~W~s~~~~-~f~I~~~~~~~~~~~GT~I~L 251 (584)
.|....+ +.+ .....+|++|+|++|+++++ +++|+|+..++ .+|.|..+|+. ...+.+. ..++||+|++
T Consensus 79 tsK~~~~-~d~---~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~GT~V~v 149 (333)
T 1b63_A 79 TSKIASL-DDL---EAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPA----AHPVGTTLEV 149 (333)
T ss_dssp CSSCCSH-HHH---HTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEE----CCCSEEEEEE
T ss_pred ccCcccc-chh---hhccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeecc----cCCCCCEEEE
Confidence 6622111 111 12356899999999999999 89999999764 47778776654 4444442 3478999999
Q ss_pred E-ec---ccccccc-----ChHHHHHHHHHHhCC
Q 007926 252 H-LR---DEAGEYL-----EESKLKELVKKYSEF 276 (584)
Q Consensus 252 ~-Lk---~d~~e~l-----~~~~lk~lvkkys~f 276 (584)
. |- +....|+ +..+|++++++|+-.
T Consensus 150 ~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~ 183 (333)
T 1b63_A 150 LDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALA 183 (333)
T ss_dssp ESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhhhhhhccHHHHHHHHHHHHHHHhcc
Confidence 8 21 1111222 227789999999853
No 24
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.55 E-value=1.7e-15 Score=160.00 Aligned_cols=165 Identities=18% Similarity=0.241 Sum_probs=101.8
Q ss_pred hhchHhHHhhcCCCC-----chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC-CccEEEEEECCCC
Q 007926 86 VSRLMDIIINSLYSN-----KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIG 159 (584)
Q Consensus 86 v~rLl~lL~~sLYs~-----~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~-~~~~L~I~DNGiG 159 (584)
++.|-+.+++.+++. +..+|+|||+||+||.+ . .|.|.+.. +...|+|.|||.|
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a------------------~--~I~I~i~~~~~~~I~V~DnG~G 74 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGA------------------T--NIDLKLKDYGVDLIEVSDNGCG 74 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTC------------------S--EEEEEEEGGGTSEEEEEECSCC
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCC------------------C--EEEEEEEeCCcEEEEEEECCCC
Confidence 445666666666664 58999999999999842 1 34444433 3458999999999
Q ss_pred CCHHHHHHHHHHHhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCC-ceeEEEecCCCceEEEeCC
Q 007926 160 MTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADGAFAISEDT 238 (584)
Q Consensus 160 MT~eeL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~-~~~~W~s~~~~~f~I~~~~ 238 (584)
|+.+++...+...+.|.... ..+.......|++|+|++|++++| +++|+|++.+. .+|.|..+++|.+.... +
T Consensus 75 i~~~~l~~~f~~~~tsK~~~----~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~-~ 148 (365)
T 1h7s_A 75 VEEENFEGLTLKHHTSKIQE----FADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKT-P 148 (365)
T ss_dssp CCGGGSGGGGC--------------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEE-E
T ss_pred cCHHHHHHHhhhcccccccc----ccchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeec-c
Confidence 99999998887777652211 000011234799999999999999 99999998754 48999987666665433 1
Q ss_pred CCCCCCCCcEEEEE-ecccc----cccc-----ChHHHHHHHHHHhCCCC
Q 007926 239 WNEPLGRGTEIRLH-LRDEA----GEYL-----EESKLKELVKKYSEFIN 278 (584)
Q Consensus 239 ~~~~~~~GT~I~L~-Lk~d~----~e~l-----~~~~lk~lvkkys~fi~ 278 (584)
....+||+|++. |-... .+|+ +..+|++++++|+-+-|
T Consensus 149 --~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p 196 (365)
T 1h7s_A 149 --YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISA 196 (365)
T ss_dssp --CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCT
T ss_pred --cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCC
Confidence 234789999997 42211 1132 24678899999987654
No 25
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.1e-14 Score=153.90 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=104.2
Q ss_pred hcCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEc-CCccEEEEEECCCCCCHHHHHHHHHHHh
Q 007926 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTIA 173 (584)
Q Consensus 95 ~sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d-~~~~~L~I~DNGiGMT~eeL~~~LgtIa 173 (584)
...-.++...|.|||+||.||.+ . .|.|.+. .+...|+|.|||.||+.+++...+..-+
T Consensus 20 gevi~~~~~vv~eLv~NaiDA~a------------------~--~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ 79 (367)
T 3h4l_A 20 GQVITDLTTAVKELVDNSIDANA------------------N--QIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHY 79 (367)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTC------------------S--EEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEE
T ss_pred CCcccCHHHHHHHHHHHHHHCCC------------------C--EEEEEEEeCCEEEEEEEECCCCcChhHhccceeccc
Confidence 34456788999999999999953 1 3444443 3446899999999999999885332222
Q ss_pred ccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEeCCCCCCCCCCcEEEE--
Q 007926 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRL-- 251 (584)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L-- 251 (584)
.|-...+ .+.......|.+|+|++|.++|| +|+|+|+..+..++.|..+++|.+.... + ....+||+|++
T Consensus 80 tsK~~~~----~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~-~--~~~~~GTtV~v~~ 151 (367)
T 3h4l_A 80 TSKIAKF----QDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKT-T--TSRNKGTTVLVSQ 151 (367)
T ss_dssp C-------------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEE-E--ECCSSEEEEEEES
T ss_pred cCcCCch----hhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeec-c--ccCCCCeEEEEch
Confidence 2211111 10112345688899999999999 7999999877678999987666655432 1 13478999999
Q ss_pred -----------EeccccccccChHHHHHHHHHHhCCC
Q 007926 252 -----------HLRDEAGEYLEESKLKELVKKYSEFI 277 (584)
Q Consensus 252 -----------~Lk~d~~e~l~~~~lk~lvkkys~fi 277 (584)
+++....+| .+|++++++|+-.-
T Consensus 152 LF~n~P~R~k~flk~~~~e~---~~i~~~l~~~Al~~ 185 (367)
T 3h4l_A 152 LFHNLPVRQKEFSKTFKRQF---TKCLTVIQGYAIIN 185 (367)
T ss_dssp TTTTCHHHHHHHHTTHHHHH---HHHHHHHHHHHHHC
T ss_pred hhccCchhhhhhccchHHHH---HHHHHHHHHHHhhC
Confidence 455544444 68999999997653
No 26
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.29 E-value=3.2e-13 Score=141.94 Aligned_cols=149 Identities=24% Similarity=0.303 Sum_probs=97.2
Q ss_pred cCCCCchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHHHHHhc
Q 007926 96 SLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAK 174 (584)
Q Consensus 96 sLYs~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~eeL~~~LgtIa~ 174 (584)
..-..+...|.|||+||.||.+ . .|.|.++.++ ..|+|.|||.||+.+++...+..-+
T Consensus 24 evi~~~~~vv~eLv~NAidA~a------------------~--~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~- 82 (348)
T 3na3_A 24 EVIQRPANAIKEMIENCLDAKS------------------T--SIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFT- 82 (348)
T ss_dssp HHCCSHHHHHHHHHHHHHHTTC------------------S--EEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTC-
T ss_pred CcccCHHHHHHHHHHHHHHcCC------------------C--EEEEEEEeCCEEEEEEEECCcCcChHHhhhhhcccc-
Confidence 3446788999999999999942 2 3444444333 4699999999999999875332222
Q ss_pred cchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCC-ceeEEEecCCCce-EEEeCCCCCCCCCCcEEEEE
Q 007926 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADGAF-AISEDTWNEPLGRGTEIRLH 252 (584)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~-~~~~W~s~~~~~f-~I~~~~~~~~~~~GT~I~L~ 252 (584)
+++.. ...+.......|.+|+|+.|..+|| +++|+|+..++ .+|.|...++... .+.+. ...+||+|++.
T Consensus 83 tsK~~---~~~dl~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~----~~~~GTtV~v~ 154 (348)
T 3na3_A 83 TSKLQ---SFEDLASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC----AGNQGTQITVE 154 (348)
T ss_dssp CSSCC---CC---------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE----CCCSEEEEEEE
T ss_pred ccccC---cchhhhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe----cCCCCcEEEEC
Confidence 22210 0000011245799999999999999 89999999764 5889988654211 12322 24789999994
Q ss_pred ------------eccccccccChHHHHHHHHHHhCC
Q 007926 253 ------------LRDEAGEYLEESKLKELVKKYSEF 276 (584)
Q Consensus 253 ------------Lk~d~~e~l~~~~lk~lvkkys~f 276 (584)
|+....+ ..+|++++++|+-.
T Consensus 155 ~LF~n~P~R~k~lk~~~~e---~~~i~~~l~~~Al~ 187 (348)
T 3na3_A 155 DLFYNIATRRKALKNPSEE---YGKILEVVGRYSVH 187 (348)
T ss_dssp STTTTCHHHHHTSCCHHHH---HHHHHHHHHHHHHH
T ss_pred cccccCchhhhhccccHHH---HHHHHHHHHHHHhh
Confidence 4443333 37789999998764
No 27
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.91 E-value=6.5e-10 Score=121.09 Aligned_cols=148 Identities=21% Similarity=0.290 Sum_probs=95.5
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC---CccEEEEEECCCCCCHHHHHHHHHHHhccchh
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~---~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~ 178 (584)
...|+|||+||.||+.. . +..+.+.|.+..+. +.-.|+|.|||+||+.+++...+.....+++.
T Consensus 34 ~qvl~nLv~NAida~~~--------g-----g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~ 100 (471)
T 1mu5_A 34 YQTVRELIENSLDATDV--------H-----GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY 100 (471)
T ss_dssp HHHHHHHHHHHHHTTGG--------G-----TCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC
T ss_pred HHHHHHHHHHHHHHhhc--------C-----CCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc
Confidence 34678999999999741 0 11123455554432 34579999999999999998766543222211
Q ss_pred HHHHhhhhcCCCCccccccceeeEEEeecCE-----EEEEEeeCCCc-eeEEEe--c----CCCceEEEeCCCCCCCCCC
Q 007926 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDDK-QYVWES--K----ADGAFAISEDTWNEPLGRG 246 (584)
Q Consensus 179 ~f~~~l~~~~~~~~IGqFGIGF~S~FmVadk-----V~V~Sk~~~~~-~~~W~s--~----~~~~f~I~~~~~~~~~~~G 246 (584)
......|.+|+|++++..+++. +.|.|+..++. ++.|.- . ++..+...+.+ .....+|
T Consensus 101 ---------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~G 170 (471)
T 1mu5_A 101 ---------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHG 170 (471)
T ss_dssp ---------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEE-CCTTCCE
T ss_pred ---------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccccccc-CCCCCCC
Confidence 1224568899999999999886 99999886544 555441 1 22233333321 1134789
Q ss_pred cEEEEEeccccccccChHHHHHHHHHHh
Q 007926 247 TEIRLHLRDEAGEYLEESKLKELVKKYS 274 (584)
Q Consensus 247 T~I~L~Lk~d~~e~l~~~~lk~lvkkys 274 (584)
|+|++.++.++.++ ..+|.+++++|+
T Consensus 171 T~V~v~l~~~~~e~--~~~I~~~l~~~a 196 (471)
T 1mu5_A 171 TSVAISIPGDWPKA--KSRIYEYIKRTY 196 (471)
T ss_dssp EEEEEEEECCHHHH--HHHHHHHHHHHH
T ss_pred EEEEEEEcCCcchH--HHHHHHHHHHHH
Confidence 99999987654322 257889998887
No 28
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.90 E-value=2.4e-09 Score=104.34 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=89.6
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHH-------HHH-HHHH
Q 007926 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL-------IKN-LGTI 172 (584)
Q Consensus 101 ~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL-------~~~-LgtI 172 (584)
+...++|||.||+||... +.. -.|.|.++.+ ..|+|.|||.||+.+++ ... ++..
T Consensus 18 ~~~~v~Elv~NsiDa~~~--------------g~a--~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~ 80 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALA--------------GHA--KRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRL 80 (201)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TCC--SEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC
T ss_pred hhhhhHHHHHHHHHHHhc--------------CCC--cEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeee
Confidence 478999999999999641 111 2566666544 58999999999999874 222 3322
Q ss_pred hccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCce--EEEeCCCCCCCCCCcEEE
Q 007926 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF--AISEDTWNEPLGRGTEIR 250 (584)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f--~I~~~~~~~~~~~GT~I~ 250 (584)
-.+|+ |-... ..-..|..|+|.-|+-.++++++|+|+..+ ..|.....+ |.. .+..........+||+|+
T Consensus 81 hatsK--~~~~~----~~~s~GfrGeglssinalS~~l~v~t~~~g-~~~~~~~~~-G~~~~~~~~~g~~~~~~~GT~V~ 152 (201)
T 3fv5_A 81 HAGGK--FSNKN----YQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFEN-GEKVQDLQVVGTCGKRNTGTSVH 152 (201)
T ss_dssp ---------------------------CHHHHHTEEEEEEEEEETT-EEEEEEEET-TEEEEEEEEEEECCTTCCEEEEE
T ss_pred ccccC--cCCCc----ccccCcccceecchhhcccceEEEEEEecC-ceEEEEEeC-CEEcccceecccCCCCCCCeEEE
Confidence 22222 22111 112479999999999999999999999854 344333333 322 222211001146899999
Q ss_pred EEecccc--ccccChHHHHHHHHHHhCCC-CcceEeeec
Q 007926 251 LHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWAS 286 (584)
Q Consensus 251 L~Lk~d~--~e~l~~~~lk~lvkkys~fi-~~PI~l~~~ 286 (584)
+...... ..-.+..+|.++++.|+-.- ...|.|+.+
T Consensus 153 f~Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~ 191 (201)
T 3fv5_A 153 FWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 191 (201)
T ss_dssp EEECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEET
T ss_pred EEECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 9632211 11246688999999997432 356666553
No 29
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.82 E-value=1.8e-09 Score=119.18 Aligned_cols=158 Identities=20% Similarity=0.245 Sum_probs=100.2
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC---CccEEEEEECCCCCCHHHHHHHHHHHhccchh
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~---~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~ 178 (584)
...|+|||+||.||... . +..+.+.|.+..+. +.-.|+|.|||+||+.+++...|.....+++.
T Consensus 33 ~qvl~NLV~NAida~~~--------g-----g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~ 99 (530)
T 2zbk_B 33 YQTVRELIENSLDATDV--------H-----GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY 99 (530)
T ss_dssp HHHHHHHHHHHHTTTTT--------T-----TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC
T ss_pred HHHHHHHHHHHHHHHhc--------c-----CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc
Confidence 45789999999999641 0 11235666665543 34579999999999999998766443222211
Q ss_pred HHHHhhhhcCCCCccccccceeeEEEeecC-----EEEEEEeeCCCc-eeEEE----ec--CCCceEEEeCCCCCCCCCC
Q 007926 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWE----SK--ADGAFAISEDTWNEPLGRG 246 (584)
Q Consensus 179 ~f~~~l~~~~~~~~IGqFGIGF~S~FmVad-----kV~V~Sk~~~~~-~~~W~----s~--~~~~f~I~~~~~~~~~~~G 246 (584)
......|.+|+|++++..+++ ++.|.|+..++. ++.+. .. ++......+.+ .....+|
T Consensus 100 ---------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~G 169 (530)
T 2zbk_B 100 ---------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHG 169 (530)
T ss_dssp ---------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEE-CCSSCCE
T ss_pred ---------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccC-CCCCCCC
Confidence 122456899999999999887 799999876544 54443 11 11122222221 1124689
Q ss_pred cEEEEEeccccccccChHHHHHHHHHHhCC-CCcceEee
Q 007926 247 TEIRLHLRDEAGEYLEESKLKELVKKYSEF-INFPIYIW 284 (584)
Q Consensus 247 T~I~L~Lk~d~~e~l~~~~lk~lvkkys~f-i~~PI~l~ 284 (584)
|+|++.++.++.++ ...+.+++++|+-. -..-|.+.
T Consensus 170 T~V~v~l~~~~~e~--~~~i~~~l~~~Al~~p~v~~~l~ 206 (530)
T 2zbk_B 170 TSVAISIPGDWPKA--KSRIYEYIKRTYIITPYAEFIFK 206 (530)
T ss_dssp EEEEEEEECCHHHH--HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeccchhhH--HHHHHHHHHHHHHHCCCcEEEEE
Confidence 99999987654322 26788888888642 34444444
No 30
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.75 E-value=5.5e-09 Score=111.29 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=97.6
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH-------HHHHHhc
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAK 174 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~-------~LgtIa~ 174 (584)
...|+|||.||+||.- +. ....|.|.++.+ ..|+|.|||.||+.+++.. .+.+...
T Consensus 34 ~~~v~Elv~N~iD~a~--~~--------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~ 96 (390)
T 1kij_A 34 HHLFKEILDNAVDEAL--AG--------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLH 96 (390)
T ss_dssp HHHHHHHHHHHHHHHH--TT--------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhh--hC--------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeee
Confidence 4578999999999973 21 123566666654 4899999999999998743 2333333
Q ss_pred cchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCC-CceEEEeCCCCCCCCCCcEEEEEe
Q 007926 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD-GAFAISEDTWNEPLGRGTEIRLHL 253 (584)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~-~~f~I~~~~~~~~~~~GT~I~L~L 253 (584)
.|.+ |-. .......|..|+|+.++..++++++|+|+..+ ..|......+ ....+..........+||+|++..
T Consensus 97 ~~~k-f~~----~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g-~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~P 170 (390)
T 1kij_A 97 SGGK-FEQ----GAYKVSGGLHGVGASVVNALSEWTVVEVFREG-KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKP 170 (390)
T ss_dssp EESG-GGG----SSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEEE
T ss_pred eccc-ccC----ccccccCCCCCcceeeecccccceEEEEecCC-cEEEEEEcCCcccccceeeccccCCCCCcEEEEEE
Confidence 3332 211 11122458999999999999999999999754 4444333332 122233221000146899999963
Q ss_pred cccc--ccccChHHHHHHHHHHhCC-CCcceEee
Q 007926 254 RDEA--GEYLEESKLKELVKKYSEF-INFPIYIW 284 (584)
Q Consensus 254 k~d~--~e~l~~~~lk~lvkkys~f-i~~PI~l~ 284 (584)
.... ..-.+...|.+.++.++-. -..-|.|.
T Consensus 171 d~~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~ 204 (390)
T 1kij_A 171 DPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQ 204 (390)
T ss_dssp CHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred ChHHhCCccccHHHHHHHHHHhcCcCCCcEEEEE
Confidence 2211 0113567888999888732 13445554
No 31
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.59 E-value=1.2e-08 Score=114.43 Aligned_cols=158 Identities=21% Similarity=0.267 Sum_probs=96.0
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC-CccEEEEEECCCCCCHHHHHHHHHHHhccchhHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~-~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f 180 (584)
...|+|||+||+||... . +..+.+.|.+..+. +...|+|.|||.||+.+++...|... .++.+ |
T Consensus 39 ~~Vl~ELV~NAIDa~~~--------~-----g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~-~atsk-f 103 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEE--------A-----GILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKL-LYGSR-F 103 (621)
T ss_dssp HHHHHHHHHHHHHHHTT--------T-----SCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCC-CCC---C
T ss_pred HHHHHHHHHHHHHHHhh--------c-----CCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhh-ccCCc-c
Confidence 45789999999999741 0 11123444444333 23579999999999999998755332 12221 1
Q ss_pred HHhhhhcCCCCccccccceeeEEEeecCE-----EEEEEeeCCC-ceeEEEe-----cCCCceE-EEeCCCCCCCCCCcE
Q 007926 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDD-KQYVWES-----KADGAFA-ISEDTWNEPLGRGTE 248 (584)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~FmVadk-----V~V~Sk~~~~-~~~~W~s-----~~~~~f~-I~~~~~~~~~~~GT~ 248 (584)
. ......|..|+|+.++..+++. +.|.|+..+. .++.+.- .+.+... ....+ ....+||+
T Consensus 104 ~------~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~--~~~~~GT~ 175 (621)
T 2q2e_B 104 H------ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRD--WFRPHGTQ 175 (621)
T ss_dssp C------CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECC--CSCSSCCC
T ss_pred c------cccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccccccccccc--CCCCCCCE
Confidence 1 0112348999999999888877 5999987643 4666553 2333321 12221 23468999
Q ss_pred EEEEeccccccccC--hHHHHHHHHHHhCC-CCcceEeee
Q 007926 249 IRLHLRDEAGEYLE--ESKLKELVKKYSEF-INFPIYIWA 285 (584)
Q Consensus 249 I~L~Lk~d~~e~l~--~~~lk~lvkkys~f-i~~PI~l~~ 285 (584)
|++.++.+ |.. ...|.++++.|+-. -..-|.+..
T Consensus 176 V~~~f~~~---~~~~~~~~I~~~L~~lAllnpgv~I~L~d 212 (621)
T 2q2e_B 176 IELEMRAA---YVKGRRQSIYEYLKATAIVNPHARITLID 212 (621)
T ss_dssp EEEECSCC---CCCCSSSSSHHHHHHHHHHCCSCEEEECC
T ss_pred EEEEecCc---cchHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 99998743 333 25677888877643 234455544
No 32
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.56 E-value=1.2e-07 Score=101.04 Aligned_cols=160 Identities=18% Similarity=0.194 Sum_probs=97.8
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHH--------HHHHHHHHh
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIA 173 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~ee--------L~~~LgtIa 173 (584)
...+.|||.||.||.- . +.. -.|.|.++.+ +.|+|.|||.||+.++ +.-.|+..-
T Consensus 33 ~~lv~ElvdNsiD~a~--------~------g~a--~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lh 95 (390)
T 1s16_A 33 NHLGQEVIDNSVDEAL--------A------GHA--KRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95 (390)
T ss_dssp HHHHHHHHHHHHHHHH--------T------TCC--SEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHh--------c------CCC--CEEEEEEecC-CEEEEEECCCCcCcccccccCcchhhheeeeec
Confidence 5789999999999953 0 112 3566666655 4899999999999888 454455433
Q ss_pred ccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCC-ceEEEeCCCCCCCCCCcEEEEE
Q 007926 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADG-AFAISEDTWNEPLGRGTEIRLH 252 (584)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~-~f~I~~~~~~~~~~~GT~I~L~ 252 (584)
.+|+ |- ...-.-.-|..|+|.-++=.++.+++|+|+..+ ..|..+...+. .-.+..........+||+|+..
T Consensus 96 agsK--f~----~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~ 168 (390)
T 1s16_A 96 AGGK--FS----NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW 168 (390)
T ss_dssp EESC--SS----SSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE
T ss_pred ccCC--cC----CCcccccCCccccchHHHHHhhcccEEEEEECC-cEEEEEEeCCcccccceecccccCCCCceEEEEE
Confidence 3332 11 011122468899999999999999999999744 45544433321 1112221100112689999987
Q ss_pred ecccc--ccccChHHHHHHHHHHhCCC-CcceEeee
Q 007926 253 LRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWA 285 (584)
Q Consensus 253 Lk~d~--~e~l~~~~lk~lvkkys~fi-~~PI~l~~ 285 (584)
....- ..-.+...|.+.++.++-.- ..-|.|..
T Consensus 169 Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d 204 (390)
T 1s16_A 169 PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 204 (390)
T ss_dssp ECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ECccccCcccccHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 32211 11246788888888876532 45555543
No 33
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.40 E-value=3.1e-07 Score=97.95 Aligned_cols=158 Identities=19% Similarity=0.205 Sum_probs=97.5
Q ss_pred CchhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHH--------HHHHHHH
Q 007926 100 NKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGT 171 (584)
Q Consensus 100 ~~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~ee--------L~~~Lgt 171 (584)
.+...+.|||.||.||..+ + ..-.|.|.++.+ +.|+|.|||.||+.++ +.-.|+.
T Consensus 34 gl~~lv~ElvdNsiDea~~--------------g--~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~ 96 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA--------------G--HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTV 96 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------T--CCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTSSBHHHHHHHS
T ss_pred CHHHHHHHHHHhHHHHHhc--------------C--CCCEEEEEEeCC-CEEEEEECCCCcccCcccccCcchHHHhhee
Confidence 4567899999999999631 1 112677777655 4999999999999887 3333443
Q ss_pred HhccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCC---CceEEEeCCCCCCCCCCcE
Q 007926 172 IAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD---GAFAISEDTWNEPLGRGTE 248 (584)
Q Consensus 172 Ia~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~---~~f~I~~~~~~~~~~~GT~ 248 (584)
.-.+|+ | ....-.-.-|..|+|.-++=.++.+++|+|+..+ ..|..+...+ ....+.. ....+||+
T Consensus 97 lhagsK--f----~~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~l~~~~----~~~~~GT~ 165 (391)
T 1ei1_A 97 LHAGGK--F----DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTG----ETEKTGTM 165 (391)
T ss_dssp TTEESC--S----SSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEEE----ECSCCEEE
T ss_pred ccccCC--c----CCCcccccCCccccchHHHHHhcCeEEEEEEeCC-cEEEEEEcCCcccccceecc----CcCCCccE
Confidence 333332 1 1111122458899999999999999999998754 4444333322 1111111 12368999
Q ss_pred EEEEecccc--c-cccChHHHHHHHHHHhCCC-CcceEeee
Q 007926 249 IRLHLRDEA--G-EYLEESKLKELVKKYSEFI-NFPIYIWA 285 (584)
Q Consensus 249 I~L~Lk~d~--~-e~l~~~~lk~lvkkys~fi-~~PI~l~~ 285 (584)
|+......- . .-.+...|.+.++.++=.- ..-|.|..
T Consensus 166 V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d 206 (391)
T 1ei1_A 166 VRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRD 206 (391)
T ss_dssp EEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEc
Confidence 998732211 1 1235678888888876432 45566643
No 34
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.38 E-value=9.9e-07 Score=87.23 Aligned_cols=158 Identities=19% Similarity=0.221 Sum_probs=90.6
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHH-------HHH-HHHH
Q 007926 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL-------IKN-LGTI 172 (584)
Q Consensus 101 ~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL-------~~~-LgtI 172 (584)
+...++|||.||.||... +.. -.|.|.++.+ ..|+|.|||.||+.++. .+. |+..
T Consensus 36 l~~lv~ElvdNsiDea~~--------------g~~--~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~l 98 (220)
T 4duh_A 36 LHHMVFEVVDNAIDEALA--------------GHC--KEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 (220)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------SCC--CEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHhc--------------CCC--CEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeec
Confidence 367899999999999631 112 3566666654 58999999999998853 122 3332
Q ss_pred hccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCC-CceEEEeCCCCCCCCCCcEEEE
Q 007926 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD-GAFAISEDTWNEPLGRGTEIRL 251 (584)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~-~~f~I~~~~~~~~~~~GT~I~L 251 (584)
-.+|+ | ....-.-.-|..|+|.-++=.++.+++|+++.++ ..|..+...+ ..-.+... +....+||+|+.
T Consensus 99 hag~K--f----d~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~~--g~~~~~GT~V~F 169 (220)
T 4duh_A 99 HAGGK--F----DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVT--GETEKTGTMVRF 169 (220)
T ss_dssp TCSSC--C----CTTC--------CCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSSCEEE--EECSCCEEEEEE
T ss_pred ccCCC--c----CCCccccccCccceecchhcccccceEEEEEECC-EEEEEEecCCcCcCCceec--cccCCCCcEEEE
Confidence 22222 2 1011123468999999999999999999998855 3333222222 00011111 123468999998
Q ss_pred Eecccc---ccccChHHHHHHHHHHhCCC--CcceEeee
Q 007926 252 HLRDEA---GEYLEESKLKELVKKYSEFI--NFPIYIWA 285 (584)
Q Consensus 252 ~Lk~d~---~e~l~~~~lk~lvkkys~fi--~~PI~l~~ 285 (584)
.....- ..-++.+.|.+.++.++ |+ ..-|.|++
T Consensus 170 ~Pd~~~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 207 (220)
T 4duh_A 170 WPSLETFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRD 207 (220)
T ss_dssp EECTTTCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEE
T ss_pred EECHHHhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEc
Confidence 633321 10235578888888887 55 44566654
No 35
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.33 E-value=9.8e-07 Score=93.41 Aligned_cols=152 Identities=10% Similarity=0.117 Sum_probs=89.1
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHH
Q 007926 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (584)
Q Consensus 101 ~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f 180 (584)
+...+.|||-||.||... +.. -.|.|.++.++ .|+|+|||.||+. |+. | ..-.+|+ |
T Consensus 31 l~~~v~ElvdNsiDe~~~--------------g~a--~~I~V~i~~~g-~I~V~DnGrGIp~-e~v--~-~lhagsK--f 87 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARR--------------GEC--RDVVLEVGGDG-SIALFCTSRTVTA-ENL--V-RVATGAG--F 87 (369)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCC--SEEEEEECTTS-CEEEEEEESSCCH-HHH--H-HHHTTTT--G
T ss_pred HHHHHHHHHhhhHhHHhh--------------CCC--CEEEEEEeCCC-EEEEEECCCCcCH-hHe--e-eeecCCC--c
Confidence 456899999999999631 112 35777766554 8999999999999 554 2 2222222 2
Q ss_pred HHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCce-----EEEeC-CCCCCCCCCcEEEEEec
Q 007926 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF-----AISED-TWNEPLGRGTEIRLHLR 254 (584)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f-----~I~~~-~~~~~~~~GT~I~L~Lk 254 (584)
......+..+.-| |.-|+=.++.+++|+|+..+ ..|..+..+ |.- .+.+. +.+....+||+|+...
T Consensus 88 ----~~~~~~~~y~vsG-Gls~vnalSs~l~v~t~r~g-~~~~~~~~~-G~~~~~~~~~~~l~~~g~~~~~GT~V~f~P- 159 (369)
T 3cwv_A 88 ----LGRPPGDGWGWDS-MLVVSLALSSRYQVDIWADG-RQWRVMGEH-GHPQGEGAAVTPMEPMPVSAERGVRVHFVP- 159 (369)
T ss_dssp ----GGSSCCCSTTTTS-SHHHHHHTEEEEEEEEEETT-EEEEEEEET-TEECTTCEEESSCCCCSSCCSEEEEEEEEE-
T ss_pred ----CCCcccccccccC-HHHHHHHhhceEEEEEEECC-CEEEEEEeC-CcccccccccCCceEecccCCCCCEEEEEE-
Confidence 1100001222224 76666777899999999754 455444433 221 02211 1122347899999872
Q ss_pred cccccc----cChHHHHHHHHHHhCCC-CcceEee
Q 007926 255 DEAGEY----LEESKLKELVKKYSEFI-NFPIYIW 284 (584)
Q Consensus 255 ~d~~e~----l~~~~lk~lvkkys~fi-~~PI~l~ 284 (584)
+..-| .+...|.+.++.++-.- ..-|.|.
T Consensus 160 -d~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~ 193 (369)
T 3cwv_A 160 -DATIFEVLAFDRARLSRRCNELAALAPGLRVSFA 193 (369)
T ss_dssp -CTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred -CHHHhCCccccHHHHHHHHHHHcCcCCCcEEEEE
Confidence 22223 46688999999887432 3455554
No 36
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.30 E-value=1.7e-06 Score=85.98 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=93.2
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHH-------HHHHHHHHhc
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED-------LIKNLGTIAK 174 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~ee-------L~~~LgtIa~ 174 (584)
...++|+|.||.|+... +.. -.|.|.++.+ ..|+|.|||.||+.++ +.-.|+.. .
T Consensus 42 ~~~v~Eiv~NaiD~~~~--------------g~~--~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~l-h 103 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS--------------GFG--DRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTIL-H 103 (226)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCC--SEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCB-C
T ss_pred HHHHHHHHHHHHHHHhc--------------CCC--cEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEee-c
Confidence 45679999999999631 112 3567766654 4899999999999987 33323333 2
Q ss_pred cchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCC----CceE-EEeCCCCCCCCCCcEE
Q 007926 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD----GAFA-ISEDTWNEPLGRGTEI 249 (584)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~----~~f~-I~~~~~~~~~~~GT~I 249 (584)
.|.+ |-.. .-.-.-|..|+|.-++=.++.+++|+++..+ ..|..+...+ .... +... ....+||+|
T Consensus 104 ag~K-fd~~----~yk~SgGlhGvG~svvNALS~~l~v~v~r~g-~~~~q~f~~Gg~~~~~l~~ig~~---~~~~~GT~V 174 (226)
T 4emv_A 104 AGGK-FGQG----GYKTSGGLHGVGSSVVNALSSWLEVEITRDG-AVYKQRFENGGKPVTTLKKIGTA---LKSKTGTKV 174 (226)
T ss_dssp -------------------CGGGCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTTEESSCSEEEEEC---CTTCCEEEE
T ss_pred ccCc-cCcc----ceEeccccccccchhhhhcccceEEEEEeCC-cEEEEEECCCCEEcCCceEeccc---CCCCCCeEE
Confidence 3322 3211 1123469999999999999999999998854 3343222222 1111 2221 114689999
Q ss_pred EEEecccc--ccccChHHHHHHHHHHhCCC--CcceEeeec
Q 007926 250 RLHLRDEA--GEYLEESKLKELVKKYSEFI--NFPIYIWAS 286 (584)
Q Consensus 250 ~L~Lk~d~--~e~l~~~~lk~lvkkys~fi--~~PI~l~~~ 286 (584)
+......- ..-++.+.|.+.++.++ |+ ..-|.|+++
T Consensus 175 ~F~PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 214 (226)
T 4emv_A 175 TFMPDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLTDK 214 (226)
T ss_dssp EEEECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEEET
T ss_pred EEEECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEEec
Confidence 98743321 11246788888888887 44 456666653
No 37
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.30 E-value=7.4e-07 Score=95.27 Aligned_cols=160 Identities=15% Similarity=0.128 Sum_probs=93.0
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHH--------HHHHHHHHh
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIA 173 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~ee--------L~~~LgtIa 173 (584)
...+.|||.||.||.. | ++ ..-.|.|.++.+++.|+|.|||.||+.++ +.-.|++.-
T Consensus 54 ~~lv~EivdNsiDe~~--~-----~g--------~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lh 118 (400)
T 1zxm_A 54 YKIFDEILVNAADNKQ--R-----DP--------KMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLL 118 (400)
T ss_dssp HHHHHHHHHHHHHHHH--H-----CT--------TCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSS
T ss_pred HHHHHHHHhhHHhHHh--h-----cC--------CCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeec
Confidence 4578999999999963 1 11 12357777766558999999999999876 333344333
Q ss_pred ccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeC-CCceeEEEecCCCc-eEEEeCCCCCCCCCCcEEEE
Q 007926 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGA-FAISEDTWNEPLGRGTEIRL 251 (584)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~-~~~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I~L 251 (584)
.+|+ |-. ..-.---|..|+|.-++=.++.+++|+++.. +...|......+.. -...... .....+||+|+.
T Consensus 119 agsK--f~~----~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig-~~~~~~GT~V~F 191 (400)
T 1zxm_A 119 TSSN--YDD----DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELK-PFNGEDYTCITF 191 (400)
T ss_dssp EESC--CCG----GGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEE-ECCSCCEEEEEE
T ss_pred ccCC--CCC----CcccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceec-cCCCCCccEEEE
Confidence 3332 211 0111246999999999999999999999874 33444433322211 1111110 011357999999
Q ss_pred Eecccc---ccccChHH---HHHHHHHHhCCC-CcceEee
Q 007926 252 HLRDEA---GEYLEESK---LKELVKKYSEFI-NFPIYIW 284 (584)
Q Consensus 252 ~Lk~d~---~e~l~~~~---lk~lvkkys~fi-~~PI~l~ 284 (584)
.....- .+ ++.+. |.+.++.++=.- ..-|.|.
T Consensus 192 ~Pd~~iF~~~e-f~~~~~~~l~~rlrelA~lnpgv~i~l~ 230 (400)
T 1zxm_A 192 QPDLSKFKMQS-LDKDIVALMVRRAYDIAGSTKDVKVFLN 230 (400)
T ss_dssp EECGGGGTCSS-CCHHHHHHHHHHHHHHHHHSSSCEEEET
T ss_pred EEChHHhCcee-ecHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 843322 12 24455 556666655221 3445553
No 38
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=97.99 E-value=8.9e-06 Score=87.15 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=87.3
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHH-------HHHHHHHh
Q 007926 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL-------IKNLGTIA 173 (584)
Q Consensus 101 ~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL-------~~~LgtIa 173 (584)
+...+.|+|.||.|+.- + +. .-.|.|.++.+ +.|+|.|||.||+.+.. .+.+.+.-
T Consensus 51 ~~hlv~EivdNsiDea~--a------------g~--~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~l 113 (408)
T 3lnu_A 51 PNHLAQEVIDNSVDEAL--A------------GH--AKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGVELILTRL 113 (408)
T ss_dssp THHHHHHHHHHHHHHHH--T------------TS--CCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC
T ss_pred cchhhHHHHHHHHHHhh--c------------CC--CceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcchheEEEec
Confidence 46789999999999852 1 11 23566666654 58999999999998762 22323333
Q ss_pred ccchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCC---CceE-EEeCCCCCCCCCCcEE
Q 007926 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD---GAFA-ISEDTWNEPLGRGTEI 249 (584)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~---~~f~-I~~~~~~~~~~~GT~I 249 (584)
..|.+ |-.. .-.-.-|..|+|.-++=.++.+++|+++..+ ..|..+...+ .... +... .....||+|
T Consensus 114 haggK-fd~~----~ykvSgGlhGvG~svVNALS~~l~v~v~rdG-k~~~q~f~~G~~~~~l~~ig~~---~~~~~GT~V 184 (408)
T 3lnu_A 114 HAGGK-FNNR----NYTFSGGLHGVGVSVVNALSTKVELFIKREG-SEHRMEFRDGNAASKLEVVGTV---GKKNTGTRL 184 (408)
T ss_dssp -------------------------CHHHHHHTEEEEEEEEEETT-EEEEEEEETTEECSCCEEEEEC---CTTCCEEEE
T ss_pred ccCCC-cCCC----ceeecCCccccccceehhccCeEEEEEEECC-EEEEEEECCCEECCCceEeccC---cCCCCCcEE
Confidence 33322 3211 1123458899999999999999999999755 3343222221 1112 2121 123689999
Q ss_pred EEEecccc--ccccChHHHHHHHHHHhCCC-CcceEeee
Q 007926 250 RLHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWA 285 (584)
Q Consensus 250 ~L~Lk~d~--~e~l~~~~lk~lvkkys~fi-~~PI~l~~ 285 (584)
+......- ..-++.+.|...++.++=.. ..-|.|++
T Consensus 185 ~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~d 223 (408)
T 3lnu_A 185 RFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHD 223 (408)
T ss_dssp EEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 98743322 11246788888888776332 34566654
No 39
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.81 E-value=2.3e-05 Score=76.15 Aligned_cols=140 Identities=21% Similarity=0.348 Sum_probs=80.6
Q ss_pred chhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHH
Q 007926 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (584)
Q Consensus 101 ~~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f 180 (584)
+...++|||.||.|+.-. +.. -.|.|.++.+ ..|+|.|||.||+.+ ..+.|+....
T Consensus 32 l~~~v~Elv~NsiD~~~a--------------g~~--~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~~ 87 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALA--------------GYA--NQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPAV 87 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TSC--CEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBHH
T ss_pred hHHHHHHHHHHHHhHHhc--------------CCC--cEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCccc
Confidence 356789999999998420 111 2566666544 499999999999976 2233332211
Q ss_pred HHhhhhcCCCCccccccceeeEE-EeecCEEEEEEeeCCCceeEEEecCC-CceEEEeCCCCCCCCCCcEEEEEeccccc
Q 007926 181 VEKMQTSGDLNLIGQFGVGFYSV-YLVADYVEVISKHNDDKQYVWESKAD-GAFAISEDTWNEPLGRGTEIRLHLRDEAG 258 (584)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~-FmVadkV~V~Sk~~~~~~~~W~s~~~-~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~ 258 (584)
+ .+ |+ .|+ =.++.+++|+++.++ ..|..+...+ ....+... +....+||+|+.. ++..
T Consensus 88 -e---------~i--~t---~SvVNALS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~i--~~~~~~GT~V~F~--Pd~~ 147 (198)
T 3ttz_A 88 -E---------VI--LT---SSVVNALSQDLEVYVHRNE-TIYHQAYKKGVPQFDLKEV--GTTDKTGTVIRFK--ADGE 147 (198)
T ss_dssp -H---------HH--HH---TCHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEE--EECSCCEEEEEEE--ECTT
T ss_pred -c---------cc--ce---eEehhhhcCeEEEEEEECC-cEEEEEEeCCEECCCceec--cCCCCCCcEEEEE--ECHH
Confidence 1 11 22 222 234689999998855 3443333222 10111111 1124689999987 3333
Q ss_pred cc-----cChHHHHHHHHHHhCCC--CcceEeee
Q 007926 259 EY-----LEESKLKELVKKYSEFI--NFPIYIWA 285 (584)
Q Consensus 259 e~-----l~~~~lk~lvkkys~fi--~~PI~l~~ 285 (584)
-| .+.+.|.+.++.++ |+ ..-|.|+.
T Consensus 148 iF~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 180 (198)
T 3ttz_A 148 IFTETTVYNYETLQQRIRELA-FLNKGIQITLRD 180 (198)
T ss_dssp TCCSCCCCCHHHHHHHHHHHH-HHSTTCEEEEEE
T ss_pred HhccCCccCHHHHHHHHHHHh-hcCCCCEEEEEe
Confidence 34 46688999999887 55 44555554
No 40
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.65 E-value=8.9e-05 Score=79.69 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=90.6
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH--------HHHHHhc
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIAK 174 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~--------~LgtIa~ 174 (584)
..+.|+|.||+|+.. | ++ .--.|.|.++.+++.|+|.|||.||+.+.... .|+++-.
T Consensus 67 ~lv~EivdNaiDe~~--~-----~g--------~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~Lha 131 (418)
T 1pvg_A 67 KIFDEILVNAADNKV--R-----DP--------SMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLT 131 (418)
T ss_dssp HHHHHHHHHHHHHHH--H-----CT--------TCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSE
T ss_pred HHHHHHHhCHHHHHH--h-----cC--------CCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEec
Confidence 478999999999963 1 11 12367777777768999999999998665221 2333333
Q ss_pred cchhHHHHhhhhcCCCCccccccceeeEEEeecCEEEEEEeeC-CCcee--EEEecC---CCceEEEeCCCCCCCCCCcE
Q 007926 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKA---DGAFAISEDTWNEPLGRGTE 248 (584)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~-~~~~~--~W~s~~---~~~f~I~~~~~~~~~~~GT~ 248 (584)
+|+ |- .+.-.-.-|..|||.-.+=.++.+++|+++.. ++..| .|+... ... .+... ....+||+
T Consensus 132 GgK--fd----~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p-~i~~~---~~~~tGT~ 201 (418)
T 1pvg_A 132 SSN--YD----DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPP-KITSY---KKGPSYTK 201 (418)
T ss_dssp ESC--CC----TTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCC-EEEEC---CSSCCEEE
T ss_pred ccc--cC----CCceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCC-eeccc---CCCCCceE
Confidence 332 10 00111235899999988888889999999863 44444 354321 112 23332 12368999
Q ss_pred EEEEeccccc--cccChHHH---HHHHHHHhCC-CCcceEeee
Q 007926 249 IRLHLRDEAG--EYLEESKL---KELVKKYSEF-INFPIYIWA 285 (584)
Q Consensus 249 I~L~Lk~d~~--e~l~~~~l---k~lvkkys~f-i~~PI~l~~ 285 (584)
|+.....+-- .-++.+.| ...++..+=. -..-|.|++
T Consensus 202 V~F~PD~~iF~~~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~d 244 (418)
T 1pvg_A 202 VTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNG 244 (418)
T ss_dssp EEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSTTCEEEETT
T ss_pred EEEEEChHHcCCcccCHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9987554321 11245553 3444433211 245566654
No 41
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.30 E-value=8e-05 Score=72.15 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=36.3
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
..|.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 158 ~il~nLl~NA~~~~~----------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 206 (268)
T 4ew8_A 158 QTLDHLVENALRQTP----------------PGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAH 206 (268)
T ss_dssp HHHHHHHHHHHHHSC----------------TTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTT
T ss_pred HHHHHHHHHHHHhCC----------------CCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHH
Confidence 568889999888741 1234566666665666899999999999988764
No 42
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.26 E-value=0.00013 Score=64.93 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=50.2
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~~ 182 (584)
..|.|||.||..+... . .....+.|.+..+.+.-.|+|.|||.||+ ++.+.+ ....+
T Consensus 42 ~il~~l~~Nai~h~~~-------~------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~----~~~~~---- 98 (145)
T 1th8_A 42 TVVSEAVTNAIIHGYN-------N------DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEAR----QPLFT---- 98 (145)
T ss_dssp HHHHHHHHHHHHTTST-------T------CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHT----CCC------
T ss_pred HHHHHHHHHHHHHhcC-------C------CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhh----ccccc----
Confidence 4688999999876420 0 11244566666665666899999999999 444322 11110
Q ss_pred hhhhcCCCCccccccceeeEEEeecCEEEEEEe
Q 007926 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISK 215 (584)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk 215 (584)
.. ...+..|+|++-+-.+++++.+.+.
T Consensus 99 ----~~--~~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 99 ----TK--PELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp -----------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred ----CC--CCCCCCcchHHHHHHHHheEEEEeC
Confidence 00 1124579998877777776655543
No 43
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.15 E-value=5.7e-05 Score=70.67 Aligned_cols=47 Identities=26% Similarity=0.426 Sum_probs=24.6
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
..|.+||+||..+.. ....|.|...... |+|.|||.||+.+++.+.+
T Consensus 120 ~il~nLl~NAi~~~~------------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if 166 (222)
T 3jz3_A 120 LLVRNLLDNAVRYSP------------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIG 166 (222)
T ss_dssp HHHHHHHHHHHHTCC------------------TTCEEEEEECSSE--EEEECSCC-----------
T ss_pred HHHHHHHHHHHHcCC------------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHH
Confidence 467889999987731 1124566554433 9999999999999887644
No 44
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.11 E-value=0.00031 Score=73.56 Aligned_cols=117 Identities=20% Similarity=0.181 Sum_probs=62.8
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
...|.+||.||+.|...-.. .. ...+.+.|.+..+.+.-.|+|.|||.||+.+++.+-|.. ..++...
T Consensus 233 ~~il~NLl~NAik~~~~~~~----~~-----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~-f~~~~~~-- 300 (394)
T 2btz_A 233 YHMLFELFKNAMRATVESHE----SS-----LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSY-MYSTAPT-- 300 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTT----TC-----SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCT-TTTCCC---
T ss_pred HHHHHHHHHHHHHHhhhccc----cC-----CCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcc-cccCCCC--
Confidence 35778999999999753100 00 112456677666656668999999999999998864421 1111110
Q ss_pred HhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 007926 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (584)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (584)
... .......+.+|+|++-|-.+++ .. +|...+... .+.||+++|.|..
T Consensus 301 ~~~--~~~~~~~~G~GLGL~i~~~i~~-------~~-----------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 301 PQP--GTGGTPLAGFGYGLPISRLYAK-------YF-----------QGDLQLFSM-----EGFGTDAVIYLKA 349 (394)
T ss_dssp ---------------CCHHHHHHHHHH-------HT-----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred CCc--ccCCCCCCCccCCHHHHHHHHH-------Hh-----------CCEEEEEec-----CCCceEEEEEecC
Confidence 000 0012234678888755444432 11 234444432 2569999998764
No 45
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.05 E-value=0.00041 Score=72.71 Aligned_cols=118 Identities=24% Similarity=0.235 Sum_probs=67.2
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
...|.+||.||+.|...-... + ...+.+.|.+..+.+.-.|+|.|+|.||+.+++.+-|. -..++...
T Consensus 232 ~~il~NLl~NAik~~~~~~~~---~------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~-~f~~~~~~-- 299 (394)
T 2e0a_A 232 HHMLFELFKNAMRATVEHQEN---Q------PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFS-YTYSTAPT-- 299 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT---S------SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTS-TTCCSSCC--
T ss_pred HHHHHHHHHHHHHHHHhcccc---c------CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhC-cCccCCCC--
Confidence 356789999999998631100 0 11345677776665666899999999999999886442 22221110
Q ss_pred HhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 007926 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (584)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (584)
..+ +.......+.+|+|++-|-.+++ .. +|...+... .+.||+++|.|..
T Consensus 300 ~~~-~~~~~~~~~G~GLGL~i~~~i~~-------~~-----------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 300 PVM-DNSRNAPLAGFGYGLPISRLYAK-------YF-----------QGDLNLYSL-----SGYGTDAIIYLKA 349 (394)
T ss_dssp C-------CCCSSCSSCHHHHHHHHHH-------HT-----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred CCc-CcCCCCCCCCcccCHHHHHHHHH-------Hh-----------CCEEEEEec-----CCccEEEEEEeCC
Confidence 000 00012235678888865444332 11 234444432 2569999998764
No 46
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=96.94 E-value=0.00038 Score=73.75 Aligned_cols=119 Identities=20% Similarity=0.192 Sum_probs=64.4
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
...|.+||.||+.|...-.-. .+ ...+.+.|.+..+.+.-.|+|.|||.||+.+++.+-|.. ..++...
T Consensus 255 ~~vl~NLl~NAik~~~~~~~~---~~-----~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~-f~~~~~~-- 323 (419)
T 1y8o_A 255 FHMLFELFKNSMRATVELYED---RK-----EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNY-MYSTAPR-- 323 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---CS-----SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCT-TTC------
T ss_pred HHHHHHHHHHHHHHHHhhccc---cC-----CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCc-ccccCCC--
Confidence 346789999999998632100 00 112456777766656668999999999999998764321 1111110
Q ss_pred HhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 007926 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (584)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (584)
..+. .......+.+|+|+.-|-.+++ .. +|...+... .+.||+++|.|..
T Consensus 324 ~~~~-~~~~~~~~G~GLGL~I~k~iv~-------~~-----------gG~I~v~s~-----~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 324 PSLE-PTRAAPLAGFGYGLPISRLYAR-------YF-----------QGDLKLYSM-----EGVGTDAVIYLKA 373 (419)
T ss_dssp ----------CC--CTTHHHHHHHHHH-------HT-----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred CCcc-ccCCCCcCCeecCHHHHHHHHH-------Hh-----------CCEEEEEec-----CCCCEEEEEEecC
Confidence 0000 0012235678888755443332 11 234444432 2569999998764
No 47
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=96.70 E-value=0.00073 Score=63.99 Aligned_cols=50 Identities=30% Similarity=0.562 Sum_probs=36.7
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
...|.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 125 ~~il~nLl~NA~~~~~----------------~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 174 (244)
T 3d36_A 125 RQCLLNVMKNAIEAMP----------------NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLER 174 (244)
T ss_dssp HHHHHHHHHHHHHTCT----------------TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcc----------------CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHH
Confidence 3467788888887741 1234566666666667899999999999998775
No 48
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=96.61 E-value=0.00071 Score=59.83 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=35.6
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
...|.+||.||..+.. ..+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 46 ~~il~nLl~NAi~~~~------------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 93 (152)
T 1id0_A 46 VEVMGNVLDNACKYCL------------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREV 93 (152)
T ss_dssp HHHHHHHHHHHHHHCS------------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTG
T ss_pred HHHHHHHHHHHHHhCc------------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHH
Confidence 3567789999988741 13566666665666899999999999888764
No 49
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=96.59 E-value=0.00076 Score=59.37 Aligned_cols=49 Identities=27% Similarity=0.232 Sum_probs=35.8
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
..|.+||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 50 ~il~nll~NAi~~~~----------------~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~ 98 (152)
T 3a0y_A 50 QVLINLVQNAIEATG----------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 98 (152)
T ss_dssp HHHHHHHHHHHHHHC----------------TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTG
T ss_pred HHHHHHHHHHHHhcC----------------CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHh
Confidence 467789999998752 1234566665555556899999999999887764
No 50
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=96.58 E-value=0.0011 Score=69.82 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=66.8
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHhccchhHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~LgtIa~Sg~~~f~ 181 (584)
...|.+||.||+.|...-.- +. ...+.+.|.+..+.+.-.|+|.|||.||+.+++.+-|. -..++...
T Consensus 245 ~~il~NLl~NAik~t~~~~~----~~-----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~-~f~~~~~~-- 312 (407)
T 2q8g_A 245 YHMVFELFKNAMRATMEHHA----NR-----GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFN-YMYSTAPR-- 312 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHST----TT-----CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGC-TTTTCCCC--
T ss_pred HHHHHHHHHHHHHHHhhccc----cC-----CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhC-ccccCCCC--
Confidence 34678999999999753100 00 12345667766665666899999999999998875332 11111100
Q ss_pred HhhhhcCCCCccccccceeeEEEeecCEEEEEEeeCCCceeEEEecCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 007926 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (584)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~FmVadkV~V~Sk~~~~~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (584)
... +.......|.+|+|+.-|-.+++ .. +|...+... .+.||+++|.|..
T Consensus 313 ~~~-~~~~~~~~~G~GLGL~Ivr~i~~-------~~-----------gG~i~v~s~-----~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 313 PRV-ETSRAVPLAGFGYGLPISRLYAQ-------YF-----------QGDLKLYSL-----EGYGTDAVIYIKA 362 (407)
T ss_dssp CCS-SCCSCCCSSCTTCHHHHHHHHHH-------HT-----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred CCc-cccCCCCCCCcCCCHHHHHHHHH-------Hh-----------CCEEEEEEc-----CCCceEEEEEECC
Confidence 000 00012345778999854443332 11 234444432 2569999998764
No 51
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.52 E-value=0.002 Score=67.57 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=35.6
Q ss_pred HHHhhhcHHHHH----HHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 105 LRELISNASDAL----DKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 105 LRELIqNA~DA~----~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
|.+||.||.|+. +.|+. .|......+.|.+..+.+.-.|+|.|||.||+.+.+.+
T Consensus 111 l~nLl~NAi~h~~e~~~~r~~--------~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~ 169 (379)
T 1b3q_A 111 LLHLLRNAIDHGIEPKEERIA--------KGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR 169 (379)
T ss_dssp HHHHHHHHHHHTSCCHHHHHH--------TTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHh--------cCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHH
Confidence 899999999996 11111 01012233444444444555799999999999998753
No 52
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0077 Score=72.18 Aligned_cols=146 Identities=14% Similarity=0.195 Sum_probs=77.9
Q ss_pred hHHHHhhhcHHH-HHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHH-------HHHHHHHHhc
Q 007926 103 IFLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED-------LIKNLGTIAK 174 (584)
Q Consensus 103 vfLRELIqNA~D-A~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~ee-------L~~~LgtIa~ 174 (584)
..+-|.|.||+| |++ +. ..-.|.|.++.+++.|+|.|||-||+-+. ..+...|.-.
T Consensus 62 hl~~EildNsiDea~a--------g~--------~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~Lh 125 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVR--------DP--------SMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLL 125 (1177)
T ss_dssp HHHHHHHHHHHHHHHH--------CT--------TCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSS
T ss_pred eEeeEEEEChHhHHhh--------CC--------CCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccc
Confidence 357899999999 442 11 11257888877788999999999998431 1112223333
Q ss_pred cchhHHHHhhhhcCCC-CccccccceeeEEEeecCEEEEEEeeC-CCcee--EEEecCC--CceEEEeCCCCCCCCCCcE
Q 007926 175 SGTSAFVEKMQTSGDL-NLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKAD--GAFAISEDTWNEPLGRGTE 248 (584)
Q Consensus 175 Sg~~~f~~~l~~~~~~-~~IGqFGIGF~S~FmVadkV~V~Sk~~-~~~~~--~W~s~~~--~~f~I~~~~~~~~~~~GT~ 248 (584)
.|.+ | . +... ---|.-|||.--|=.++.++.|.+... ++..| .|+.... +.-.|... .....||+
T Consensus 126 AGgK-F----d-~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~---~~~~tGT~ 196 (1177)
T 4gfh_A 126 TSSN-Y----D-DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY---KKGPSYTK 196 (1177)
T ss_dssp EESC-C----C-CSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC---CSSCCCEE
T ss_pred cccC-c----C-CCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecC---CCCCCceE
Confidence 3321 1 0 1111 234899999754444566666665432 33333 3443211 11122222 23357999
Q ss_pred EEEEecccc--ccccChHHHHHHHHHH
Q 007926 249 IRLHLRDEA--GEYLEESKLKELVKKY 273 (584)
Q Consensus 249 I~L~Lk~d~--~e~l~~~~lk~lvkky 273 (584)
|+......- ..-++.+.+..+.++.
T Consensus 197 V~F~PD~~iF~~~~~~~d~l~~~~r~~ 223 (1177)
T 4gfh_A 197 VTFKPDLTRFGMKELDNDILGVMRRRV 223 (1177)
T ss_dssp EEEEECHHHHTCSSCCHHHHHHHHHHH
T ss_pred EEEEeCHHhcCCcEeCHHHHHHHHHHH
Confidence 988654321 1123556665555544
No 53
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.24 E-value=0.0054 Score=53.38 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=33.1
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL 165 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL 165 (584)
..++|||+||..+. ....+.|.+..+.+.-.|+|.|||.||+.+++
T Consensus 43 ~il~nll~Na~k~~-----------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 43 MCLKEAVTNVVKHS-----------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHT-----------------CCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHhcC-----------------CCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 36788888887652 12345666666666668999999999986654
No 54
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=96.15 E-value=0.0056 Score=54.11 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=36.9
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
..|.+||.||..+.. ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+
T Consensus 49 ~il~nLl~NA~~~~~-----------------~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if 98 (150)
T 1ysr_A 49 LAVDNAIANAVKHGG-----------------ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVF 98 (150)
T ss_dssp HHHHHHHHHHHHTTC-----------------CSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHH
T ss_pred HHHHHHHHHHHhcCC-----------------CcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHh
Confidence 467789999887631 12456666666666789999999999999887644
No 55
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.13 E-value=0.0059 Score=57.14 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=30.7
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL 165 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL 165 (584)
.++|||.||..+. ....+.|.+..+.+.-.|+|.|||.||+.+.+
T Consensus 134 il~nll~Na~k~~-----------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHS-----------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHT-----------------CCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhC-----------------CCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 6788888887663 11346666666666678999999999998876
No 56
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=96.10 E-value=0.0052 Score=56.68 Aligned_cols=57 Identities=25% Similarity=0.352 Sum_probs=36.1
Q ss_pred HHHHhhhcHHHHHHH---HHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 104 FLRELISNASDALDK---IRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 104 fLRELIqNA~DA~~k---~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
.|.+||.||..+... .|... |......+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 51 il~nLl~NAik~~~~~~~~~~~~-------~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 110 (189)
T 1i58_A 51 PLLHLLRNAIDHGIEPKEERIAK-------GKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR 110 (189)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHH-------TSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccc-------cCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhh
Confidence 389999999998510 00000 0012234555555555556799999999999998743
No 57
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=96.07 E-value=0.001 Score=60.86 Aligned_cols=49 Identities=31% Similarity=0.493 Sum_probs=33.9
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcC--CccEEEEEECCCCCCHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK--EKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~--~~~~L~I~DNGiGMT~eeL~~ 167 (584)
..|.+||.||..+.. ....+.|.|.... +.-.|+|.|||.||+.+++..
T Consensus 46 ~il~nLl~NAi~~~~----------------~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~ 96 (177)
T 3sl2_A 46 QVLDNIISNALKYSP----------------EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEK 96 (177)
T ss_dssp HHHHHHHHHHHHTCC----------------TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTT
T ss_pred HHHHHHHHHHHHhCC----------------CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHH
Confidence 467888999888741 1234556664333 345789999999999887764
No 58
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.04 E-value=0.0017 Score=62.79 Aligned_cols=53 Identities=15% Similarity=0.274 Sum_probs=34.1
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKN 168 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~~ 168 (584)
..|..||+||..+.. +. .....+.|.+..+.+.-.|+|.|||.||+.+++.+.
T Consensus 141 ~il~NLl~NAik~~~---------~~----~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~i 193 (258)
T 2c2a_A 141 QVLLNLLNNGVKYSK---------KD----APDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRI 193 (258)
T ss_dssp HHHHHHHHHHHHTCC---------TT----CTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGG
T ss_pred HHHHHHHHHHHhcCc---------CC----CCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhh
Confidence 466788999987642 00 111224444444445567999999999999887653
No 59
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=95.81 E-value=0.005 Score=54.39 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=29.3
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCC----------ccEEEEEECCCCCCHHHHHHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE----------KKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~----------~~~L~I~DNGiGMT~eeL~~~L 169 (584)
...+.+||.||..+... ....+.|.+..+.. .-.|+|.|||.||+.+++.+.+
T Consensus 50 ~~il~nLl~NAik~~~~---------------~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf 112 (160)
T 1r62_A 50 EQVLLNIVRNALQALGP---------------EGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLF 112 (160)
T ss_dssp HHHHHHHHHHHHHHHGG---------------GCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------
T ss_pred HHHHHHHHHHHHHHhhc---------------cCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhh
Confidence 35678899999888631 02334555544433 4478999999999999887643
No 60
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.76 E-value=0.005 Score=52.75 Aligned_cols=44 Identities=27% Similarity=0.487 Sum_probs=31.8
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED 164 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~ee 164 (584)
..++||++||..+. ....+.|.+..+.+ -.|+|+|||.||+.+.
T Consensus 42 ~il~nll~Na~k~~-----------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 42 AVLREAVSNAVRHA-----------------NATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHTCT-----------------TCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHhC-----------------CCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 46788888886543 12345666666656 7899999999999765
No 61
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=95.52 E-value=0.0042 Score=53.47 Aligned_cols=44 Identities=30% Similarity=0.489 Sum_probs=32.4
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED 164 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~ee 164 (584)
..++|||+||..+. ....+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 46 ~il~nll~NA~k~~-----------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 46 AVVREAVSNAVRHA-----------------AASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHCCCCS-----------------SCCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHhC-----------------CCceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 46788888888763 12346677766666 7899999999998654
No 62
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=95.04 E-value=0.012 Score=61.12 Aligned_cols=58 Identities=29% Similarity=0.355 Sum_probs=40.6
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
...|.+||.||+.|...-. .. +....+.+.|.+..+.+.-+|+|.|||.||+.+++.+
T Consensus 240 ~~il~NLl~NAik~~~~~~------~~--~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~ 297 (388)
T 1gkz_A 240 DYILPELLKNAMRATMESH------LD--TPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDR 297 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTC------TT--CTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTT
T ss_pred HHHHHHHHHHHHHHhhccc------cC--CCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHH
Confidence 4578999999999986310 00 0012245677776666666899999999999988765
No 63
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=94.98 E-value=0.012 Score=58.56 Aligned_cols=49 Identities=27% Similarity=0.232 Sum_probs=36.2
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
..|.+||.||..|.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 247 ~vl~nLl~NA~k~~~----------------~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 247 QVLINLVQNAIEATG----------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHHTHHHHTTC----------------TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHHhcc----------------CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 367889999988741 1245667766666667899999999999887654
No 64
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=94.88 E-value=0.014 Score=52.20 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=34.6
Q ss_pred hHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 007926 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (584)
Q Consensus 103 vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~eeL~~ 167 (584)
..|.+||+||..+. ...+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 50 ~il~nll~NAik~~------------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 96 (161)
T 1bxd_A 50 RAVANMVVNAARYG------------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKH 96 (161)
T ss_dssp HHHHHHHHHHHTTC------------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGC
T ss_pred HHHHHHHHHHHhhc------------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 46778888886652 134567666666666899999999999887764
No 65
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=89.99 E-value=0.21 Score=48.61 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=31.4
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCCccEEEEEECCCC--CCHHHHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIG--MTKEDLI 166 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~~~~L~I~DNGiG--MT~eeL~ 166 (584)
.+.=||+||.+|.. ....+.|.+..+.+.-.|+|.|+|.| +..+.+.
T Consensus 150 vl~NLl~NA~~a~~----------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~ 198 (247)
T 4fpp_A 150 AVLNIAQIAASALP----------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVLA 198 (247)
T ss_dssp HHHHHHHHHHTTCT----------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHH
T ss_pred HHHHHHHHHHHhcC----------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHH
Confidence 34568888887742 22456677666666678999999977 5554433
No 66
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=76.61 E-value=2.6 Score=44.20 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=31.3
Q ss_pred hhHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEcCC-ccEEEEEECCCCCCHH
Q 007926 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKE 163 (584)
Q Consensus 102 ~vfLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d~~-~~~L~I~DNGiGMT~e 163 (584)
...+.||+.||+.+.- +. .....+.|++..+.+ .-+|+|.|+|.|++..
T Consensus 299 ~l~v~El~~Nav~Ha~---------~~----~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 299 VHAISEFVENAVEHGY---------AT----DVSKGIVVAAALAGDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHBC---------CS----CCTTCEEEEEEECTTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHhcc---------cC----CCCceEEEEEEEcCCCEEEEEEEECCCCCCCC
Confidence 4689999999998731 10 223456677666533 4589999999999865
No 67
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=72.51 E-value=2.2 Score=40.73 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=37.6
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCccEEEEEEc--CCccEEEEEECCCCCCHHHHHHHH
Q 007926 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD--KEKKILSIRDRGIGMTKEDLIKNL 169 (584)
Q Consensus 104 fLRELIqNA~DA~~k~R~~sltd~~~~g~~~~~~l~I~I~~d--~~~~~L~I~DNGiGMT~eeL~~~L 169 (584)
-+-.||.||.+|++.. . .+ .....+.|.|..+ .+.-.+.|.|+|.|++.+.+.+.|
T Consensus 109 ~lgnLi~na~~Ai~~~----~-~~-----~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if 166 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQA----V-SR-----ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIR 166 (192)
T ss_dssp HHHHHHHHHHHHHHHH----B-CT-----TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---
T ss_pred HHHHHHHHHHHHHHhh----h-cc-----CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHH
Confidence 4566999999998642 1 11 2245566666665 456789999999999988776544
Done!