Query 007929
Match_columns 584
No_of_seqs 246 out of 2383
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 17:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469 Elongation factor 2 [T 100.0 2E-116 5E-121 890.1 31.3 569 9-584 20-591 (842)
2 PTZ00416 elongation factor 2; 100.0 5E-102 1E-106 888.5 59.1 566 6-583 17-584 (836)
3 PLN00116 translation elongatio 100.0 2E-101 5E-106 884.8 61.4 575 6-583 17-591 (843)
4 COG0480 FusA Translation elong 100.0 9.2E-91 2E-95 766.5 47.1 483 6-583 8-512 (697)
5 KOG0468 U5 snRNP-specific prot 100.0 9E-88 1.9E-92 700.9 43.6 560 6-583 126-688 (971)
6 KOG0465 Mitochondrial elongati 100.0 1.6E-89 3.5E-94 712.6 27.6 474 6-571 37-526 (721)
7 PRK12739 elongation factor G; 100.0 1.1E-80 2.4E-85 703.4 50.7 485 7-582 7-510 (691)
8 PRK00007 elongation factor G; 100.0 1.3E-80 2.9E-85 702.2 49.1 471 6-566 8-493 (693)
9 KOG0467 Translation elongation 100.0 4.5E-81 9.8E-86 662.5 32.6 528 7-565 8-554 (887)
10 PRK07560 elongation factor EF- 100.0 1.8E-79 3.8E-84 696.8 47.4 471 6-583 18-491 (731)
11 TIGR00484 EF-G translation elo 100.0 8.7E-78 1.9E-82 680.3 49.4 483 7-582 9-511 (689)
12 PRK13351 elongation factor G; 100.0 2.1E-75 4.6E-80 662.4 48.5 468 7-566 7-489 (687)
13 TIGR00490 aEF-2 translation el 100.0 8.4E-76 1.8E-80 665.0 44.9 471 6-583 17-491 (720)
14 PRK12740 elongation factor G; 100.0 6.5E-71 1.4E-75 624.8 48.2 457 17-566 1-472 (668)
15 PRK00741 prfC peptide chain re 100.0 3.3E-70 7.2E-75 594.9 40.3 436 6-562 8-473 (526)
16 KOG0464 Elongation factor G [T 100.0 5.2E-70 1.1E-74 542.4 17.4 465 7-564 36-540 (753)
17 TIGR00503 prfC peptide chain r 100.0 6.3E-67 1.4E-71 569.3 38.9 438 6-561 9-473 (527)
18 TIGR01394 TypA_BipA GTP-bindin 100.0 4E-63 8.8E-68 545.8 39.9 377 9-561 2-389 (594)
19 PRK10218 GTP-binding protein; 100.0 5.7E-62 1.2E-66 535.6 39.6 378 7-559 4-392 (607)
20 PRK05433 GTP-binding protein L 100.0 7.9E-60 1.7E-64 521.6 39.5 365 7-563 6-382 (600)
21 TIGR01393 lepA GTP-binding pro 100.0 1.2E-58 2.7E-63 511.6 40.1 365 7-563 2-378 (595)
22 COG1217 TypA Predicted membran 100.0 1E-57 2.2E-62 462.2 31.9 379 9-563 6-395 (603)
23 KOG0462 Elongation factor-type 100.0 3.8E-54 8.2E-59 444.4 26.8 367 7-561 59-432 (650)
24 COG4108 PrfC Peptide chain rel 100.0 8.7E-52 1.9E-56 417.3 27.3 439 7-561 11-474 (528)
25 COG0481 LepA Membrane GTPase L 100.0 1.1E-50 2.3E-55 412.5 29.7 369 7-562 8-383 (603)
26 cd01886 EF-G Elongation factor 100.0 1.6E-41 3.4E-46 341.9 21.9 257 10-335 1-270 (270)
27 cd01885 EF2 EF2 (for archaea a 100.0 2.9E-39 6.3E-44 315.7 22.4 203 10-221 2-209 (222)
28 cd04168 TetM_like Tet(M)-like 100.0 1E-36 2.3E-41 301.8 21.6 224 10-335 1-237 (237)
29 cd04169 RF3 RF3 subfamily. Pe 100.0 8.1E-37 1.8E-41 307.5 20.7 249 8-335 2-267 (267)
30 cd04170 EF-G_bact Elongation f 100.0 3E-35 6.4E-40 297.9 21.8 255 10-335 1-268 (268)
31 CHL00071 tufA elongation facto 100.0 4.5E-34 9.8E-39 305.3 27.7 294 6-463 10-307 (409)
32 COG5256 TEF1 Translation elong 100.0 1.6E-33 3.5E-38 285.9 26.1 285 6-462 5-315 (428)
33 PRK12736 elongation factor Tu; 100.0 1.8E-33 3.9E-38 299.2 26.8 284 6-463 10-297 (394)
34 PLN00043 elongation factor 1-a 100.0 1.9E-33 4.2E-38 301.9 25.1 288 5-462 4-317 (447)
35 PTZ00141 elongation factor 1- 100.0 2.5E-33 5.4E-38 301.3 24.7 288 5-462 4-317 (446)
36 TIGR00485 EF-Tu translation el 100.0 3.3E-32 7.1E-37 289.9 27.4 284 6-463 10-297 (394)
37 PLN03126 Elongation factor Tu; 100.0 3E-32 6.5E-37 293.7 27.1 295 5-463 78-376 (478)
38 PRK12735 elongation factor Tu; 100.0 3.1E-32 6.8E-37 289.9 25.8 286 6-463 10-299 (396)
39 PRK00049 elongation factor Tu; 100.0 1.1E-31 2.4E-36 285.5 26.4 286 6-463 10-299 (396)
40 PRK05306 infB translation init 100.0 4E-31 8.7E-36 297.4 31.2 304 6-514 288-621 (787)
41 PLN03127 Elongation factor Tu; 100.0 9E-31 1.9E-35 281.0 28.4 286 6-463 59-350 (447)
42 PRK12317 elongation factor 1-a 100.0 8.1E-31 1.7E-35 282.4 24.7 286 6-463 4-310 (425)
43 TIGR02034 CysN sulfate adenyly 100.0 4.3E-30 9.2E-35 274.2 27.3 146 9-181 1-164 (406)
44 PRK05124 cysN sulfate adenylyl 100.0 8.1E-30 1.8E-34 276.1 26.1 149 6-181 25-191 (474)
45 COG0050 TufB GTPases - transla 100.0 2.2E-30 4.9E-35 249.9 18.2 282 8-463 12-297 (394)
46 KOG0460 Mitochondrial translat 100.0 1.2E-30 2.6E-35 256.2 16.2 281 10-463 54-341 (449)
47 cd04167 Snu114p Snu114p subfam 100.0 1.5E-29 3.3E-34 247.5 22.1 196 10-221 2-200 (213)
48 TIGR00487 IF-2 translation ini 100.0 1.2E-28 2.6E-33 271.7 31.2 307 5-514 84-419 (587)
49 TIGR00483 EF-1_alpha translati 100.0 2E-29 4.4E-34 271.5 24.6 287 5-463 4-312 (426)
50 PTZ00327 eukaryotic translatio 100.0 8.6E-28 1.9E-32 257.4 26.5 134 6-155 32-184 (460)
51 CHL00189 infB translation init 100.0 1.8E-27 4E-32 265.5 27.5 306 6-512 242-574 (742)
52 KOG0458 Elongation factor 1 al 100.0 1.3E-27 2.9E-32 250.7 24.5 285 7-460 176-487 (603)
53 PRK05506 bifunctional sulfate 100.0 1.9E-27 4.2E-32 267.6 25.7 150 6-182 22-189 (632)
54 PF00009 GTP_EFTU: Elongation 99.9 1.2E-27 2.6E-32 229.5 13.6 169 7-212 2-175 (188)
55 PRK04000 translation initiatio 99.9 4.5E-26 9.8E-31 243.3 25.7 136 4-155 5-152 (411)
56 PRK10512 selenocysteinyl-tRNA- 99.9 3.9E-26 8.5E-31 253.7 26.1 254 10-463 2-260 (614)
57 TIGR03680 eif2g_arch translati 99.9 1.6E-25 3.4E-30 239.3 26.3 133 7-156 3-148 (406)
58 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.6E-26 3.6E-31 222.1 15.2 168 8-211 2-170 (195)
59 TIGR00475 selB selenocysteine- 99.9 1.4E-24 3E-29 240.7 24.6 116 9-156 1-117 (581)
60 COG2895 CysN GTPases - Sulfate 99.9 5E-24 1.1E-28 211.2 22.0 148 7-181 5-170 (431)
61 cd01883 EF1_alpha Eukaryotic e 99.9 5.1E-25 1.1E-29 216.3 13.8 150 10-184 1-173 (219)
62 cd04166 CysN_ATPS CysN_ATPS su 99.9 5.1E-24 1.1E-28 207.6 16.2 146 10-182 1-162 (208)
63 COG5257 GCD11 Translation init 99.9 1.1E-22 2.3E-27 199.3 24.3 355 6-554 8-386 (415)
64 KOG1145 Mitochondrial translat 99.9 2.9E-23 6.2E-28 215.7 19.8 306 6-512 151-503 (683)
65 COG3276 SelB Selenocysteine-sp 99.9 1.5E-22 3.3E-27 207.6 21.1 111 17-156 6-117 (447)
66 COG5258 GTPBP1 GTPase [General 99.9 7.6E-23 1.6E-27 204.3 18.0 300 7-462 116-436 (527)
67 PRK04004 translation initiatio 99.9 1.2E-21 2.6E-26 216.8 25.8 64 92-155 73-136 (586)
68 COG0532 InfB Translation initi 99.9 1.1E-21 2.3E-26 206.5 21.9 117 7-155 4-120 (509)
69 KOG0459 Polypeptide release fa 99.9 8.4E-22 1.8E-26 198.2 12.3 288 6-463 77-390 (501)
70 KOG0461 Selenocysteine-specifi 99.9 1E-20 2.2E-25 186.6 18.1 128 9-155 8-135 (522)
71 cd01891 TypA_BipA TypA (tyrosi 99.9 9.9E-21 2.1E-25 182.4 16.6 128 9-155 3-130 (194)
72 TIGR00491 aIF-2 translation in 99.8 4.4E-19 9.6E-24 195.6 28.2 130 7-155 3-134 (590)
73 PF14492 EFG_II: Elongation Fa 99.8 2.9E-21 6.4E-26 155.6 7.7 74 475-551 1-75 (75)
74 cd01890 LepA LepA subfamily. 99.8 5.9E-20 1.3E-24 174.1 16.5 131 10-155 2-132 (179)
75 cd01888 eIF2_gamma eIF2-gamma 99.8 8.9E-20 1.9E-24 177.0 12.8 131 9-155 1-150 (203)
76 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.5E-19 3.3E-24 177.5 13.9 157 10-182 1-168 (224)
77 cd01889 SelB_euk SelB subfamil 99.8 4.3E-19 9.4E-24 170.7 16.6 133 9-155 1-133 (192)
78 cd00881 GTP_translation_factor 99.8 1.1E-17 2.3E-22 159.5 16.6 128 10-156 1-128 (189)
79 PRK14845 translation initiatio 99.8 2.7E-16 5.9E-21 181.3 27.9 125 10-155 465-591 (1049)
80 cd04090 eEF2_II_snRNP Loc2 eEF 99.7 8.1E-18 1.8E-22 142.3 11.1 94 368-461 1-94 (94)
81 cd03690 Tet_II Tet_II: This su 99.7 8.8E-18 1.9E-22 139.1 9.8 82 366-460 2-84 (85)
82 cd04092 mtEFG2_II_like mtEFG2_ 99.7 7.9E-17 1.7E-21 133.0 9.7 82 368-461 1-83 (83)
83 cd04171 SelB SelB subfamily. 99.7 2.8E-16 6E-21 146.1 14.2 115 10-155 2-117 (164)
84 COG1160 Predicted GTPases [Gen 99.7 2.3E-16 5.1E-21 163.9 13.7 151 7-211 177-338 (444)
85 cd03689 RF3_II RF3_II: this su 99.7 2.9E-16 6.2E-21 129.9 9.0 80 370-461 1-84 (85)
86 cd04088 EFG_mtEFG_II EFG_mtEFG 99.7 4.4E-16 9.5E-21 128.6 9.5 82 368-461 1-83 (83)
87 PRK00093 GTP-binding protein D 99.7 1.6E-15 3.6E-20 164.3 16.0 149 7-211 172-331 (435)
88 cd04091 mtEFG1_II_like mtEFG1_ 99.6 7.5E-16 1.6E-20 126.5 9.7 80 368-461 1-81 (81)
89 TIGR03594 GTPase_EngA ribosome 99.6 2.7E-15 5.9E-20 162.4 15.2 150 7-211 171-331 (429)
90 cd03700 eEF2_snRNP_like_II EF2 99.6 1.9E-15 4E-20 127.6 10.8 90 368-460 1-91 (93)
91 KOG0463 GTP-binding protein GP 99.6 1.6E-15 3.6E-20 151.3 10.7 310 8-463 133-456 (641)
92 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 4.4E-15 9.5E-20 138.8 12.5 114 10-155 2-115 (168)
93 PRK15494 era GTPase Era; Provi 99.6 3.4E-14 7.5E-19 148.3 19.3 115 7-155 51-173 (339)
94 COG1159 Era GTPase [General fu 99.6 4.1E-14 8.9E-19 139.8 17.8 116 7-156 5-128 (298)
95 cd03691 BipA_TypA_II BipA_TypA 99.6 6.4E-15 1.4E-19 122.5 9.9 84 368-460 1-85 (86)
96 PRK03003 GTP-binding protein D 99.6 1E-13 2.2E-18 151.4 21.5 115 7-155 210-335 (472)
97 PRK09554 feoB ferrous iron tra 99.6 1E-13 2.2E-18 157.9 21.0 111 8-155 3-125 (772)
98 cd01894 EngA1 EngA1 subfamily. 99.6 1.4E-14 3.1E-19 133.4 11.6 109 17-156 3-119 (157)
99 COG1160 Predicted GTPases [Gen 99.6 1.3E-14 2.9E-19 150.9 12.4 113 9-155 4-125 (444)
100 cd03699 lepA_II lepA_II: This 99.6 1.1E-14 2.5E-19 120.9 9.6 81 368-461 1-86 (86)
101 cd01895 EngA2 EngA2 subfamily. 99.6 5.3E-14 1.1E-18 131.6 14.9 115 8-156 2-127 (174)
102 TIGR00436 era GTP-binding prot 99.5 1.9E-13 4.2E-18 138.6 18.5 111 10-155 2-120 (270)
103 COG2229 Predicted GTPase [Gene 99.5 1.2E-13 2.7E-18 126.7 12.9 131 7-164 9-140 (187)
104 cd04160 Arfrp1 Arfrp1 subfamil 99.5 7.8E-14 1.7E-18 130.4 11.9 116 10-156 1-121 (167)
105 KOG1144 Translation initiation 99.5 2.9E-14 6.2E-19 152.9 8.8 136 7-162 474-611 (1064)
106 TIGR03594 GTPase_EngA ribosome 99.5 7.5E-14 1.6E-18 151.1 12.0 113 10-156 1-121 (429)
107 cd01864 Rab19 Rab19 subfamily. 99.5 6.9E-14 1.5E-18 130.7 10.1 117 7-156 2-122 (165)
108 KOG0466 Translation initiation 99.5 3.7E-14 8.1E-19 138.4 8.5 134 7-156 37-193 (466)
109 PRK00089 era GTPase Era; Revie 99.5 2E-12 4.3E-17 132.8 20.2 115 7-155 4-126 (292)
110 PRK09518 bifunctional cytidyla 99.5 3.1E-13 6.6E-18 154.5 14.8 114 8-155 450-574 (712)
111 PRK00093 GTP-binding protein D 99.5 2.6E-13 5.7E-18 147.2 13.1 113 9-155 2-122 (435)
112 PRK03003 GTP-binding protein D 99.5 2.7E-13 5.8E-18 148.2 13.0 113 9-155 39-159 (472)
113 cd04164 trmE TrmE (MnmE, ThdF, 99.5 3.5E-13 7.7E-18 124.0 11.9 112 9-156 2-121 (157)
114 TIGR03598 GTPase_YsxC ribosome 99.5 6.6E-13 1.4E-17 126.2 14.0 131 6-182 16-159 (179)
115 cd04124 RabL2 RabL2 subfamily. 99.5 3E-13 6.5E-18 126.1 10.9 114 9-155 1-117 (161)
116 cd04115 Rab33B_Rab33A Rab33B/R 99.4 4E-13 8.7E-18 126.4 10.7 116 7-155 1-122 (170)
117 cd01879 FeoB Ferrous iron tran 99.4 4E-13 8.8E-18 124.0 10.5 106 17-156 2-115 (158)
118 PF02421 FeoB_N: Ferrous iron 99.4 3.3E-13 7.1E-18 124.0 9.6 111 9-156 1-119 (156)
119 cd04145 M_R_Ras_like M-Ras/R-R 99.4 7.7E-13 1.7E-17 123.1 12.3 113 8-155 2-120 (164)
120 cd01866 Rab2 Rab2 subfamily. 99.4 1E-12 2.2E-17 123.3 13.1 115 8-155 4-122 (168)
121 cd04113 Rab4 Rab4 subfamily. 99.4 7.7E-13 1.7E-17 122.9 12.0 114 9-155 1-118 (161)
122 cd04105 SR_beta Signal recogni 99.4 1.8E-12 3.9E-17 125.8 14.5 134 10-180 2-144 (203)
123 cd01898 Obg Obg subfamily. Th 99.4 1.8E-12 3.9E-17 121.4 13.5 111 10-155 2-127 (170)
124 TIGR00450 mnmE_trmE_thdF tRNA 99.4 1.1E-12 2.3E-17 141.4 13.2 114 7-155 202-323 (442)
125 cd04154 Arl2 Arl2 subfamily. 99.4 1.7E-12 3.7E-17 122.4 12.4 112 6-155 12-128 (173)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.4 1.3E-12 2.8E-17 121.0 11.4 109 10-156 1-114 (158)
127 cd04157 Arl6 Arl6 subfamily. 99.4 2E-12 4.2E-17 120.1 12.5 111 10-156 1-118 (162)
128 smart00175 RAB Rab subfamily o 99.4 8.5E-13 1.8E-17 122.7 10.0 114 9-155 1-118 (164)
129 TIGR00231 small_GTP small GTP- 99.4 4.7E-13 1E-17 122.4 8.0 115 8-156 1-122 (161)
130 PF01926 MMR_HSR1: 50S ribosom 99.4 2.1E-12 4.6E-17 113.5 11.7 107 10-151 1-116 (116)
131 cd01862 Rab7 Rab7 subfamily. 99.4 2E-12 4.4E-17 121.2 12.3 114 9-155 1-122 (172)
132 cd04106 Rab23_lke Rab23-like s 99.4 1.1E-12 2.4E-17 121.8 10.4 116 9-155 1-119 (162)
133 KOG0084 GTPase Rab1/YPT1, smal 99.4 1.9E-12 4.2E-17 119.8 11.5 123 1-156 2-128 (205)
134 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 1.3E-12 2.9E-17 124.6 10.7 115 8-155 3-122 (183)
135 cd04163 Era Era subfamily. Er 99.4 5.4E-12 1.2E-16 116.8 14.5 114 8-155 3-124 (168)
136 cd04151 Arl1 Arl1 subfamily. 99.4 1.7E-12 3.6E-17 120.5 11.0 108 10-155 1-113 (158)
137 PRK09518 bifunctional cytidyla 99.4 1.7E-12 3.7E-17 148.4 13.4 113 9-155 276-396 (712)
138 cd00879 Sar1 Sar1 subfamily. 99.4 2E-12 4.4E-17 123.8 11.7 114 4-155 15-133 (190)
139 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 3.5E-12 7.6E-17 120.6 12.9 112 7-156 14-130 (174)
140 cd01867 Rab8_Rab10_Rab13_like 99.4 3.5E-12 7.5E-17 119.6 12.8 117 7-156 2-122 (167)
141 cd01860 Rab5_related Rab5-rela 99.4 1.8E-12 3.8E-17 120.6 10.6 115 8-155 1-119 (163)
142 smart00178 SAR Sar1p-like memb 99.4 3.6E-12 7.8E-17 121.7 12.9 112 6-155 15-131 (184)
143 cd04114 Rab30 Rab30 subfamily. 99.4 1.4E-12 3E-17 122.1 9.8 116 7-155 6-125 (169)
144 PRK05291 trmE tRNA modificatio 99.4 1.8E-12 3.9E-17 140.3 12.1 113 7-155 214-334 (449)
145 cd04161 Arl2l1_Arl13_like Arl2 99.4 4.1E-12 8.8E-17 119.3 12.8 108 11-156 2-114 (167)
146 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 4.9E-12 1.1E-16 118.2 12.9 115 8-155 2-120 (166)
147 smart00173 RAS Ras subfamily o 99.4 3.4E-12 7.3E-17 118.9 11.7 112 9-155 1-118 (164)
148 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 6.3E-12 1.4E-16 117.7 13.4 109 11-156 2-113 (164)
149 cd01861 Rab6 Rab6 subfamily. 99.4 1.9E-12 4.2E-17 120.0 9.8 114 9-155 1-118 (161)
150 cd04122 Rab14 Rab14 subfamily. 99.4 5.1E-12 1.1E-16 118.2 12.6 114 8-156 2-121 (166)
151 KOG1143 Predicted translation 99.4 9.5E-12 2.1E-16 124.7 15.0 158 8-181 167-332 (591)
152 cd04123 Rab21 Rab21 subfamily. 99.4 6.3E-12 1.4E-16 116.3 12.7 114 9-155 1-118 (162)
153 cd04116 Rab9 Rab9 subfamily. 99.4 6.6E-12 1.4E-16 117.8 12.8 116 7-155 4-127 (170)
154 cd00154 Rab Rab family. Rab G 99.4 6.1E-12 1.3E-16 115.4 12.3 114 9-155 1-118 (159)
155 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 7.2E-12 1.6E-16 121.3 13.3 113 9-155 1-123 (201)
156 cd01863 Rab18 Rab18 subfamily. 99.4 3.8E-12 8.2E-17 118.2 10.9 114 9-155 1-119 (161)
157 cd04120 Rab12 Rab12 subfamily. 99.4 3.8E-12 8.2E-17 123.3 11.0 113 10-155 2-118 (202)
158 cd00877 Ran Ran (Ras-related n 99.4 2.7E-12 5.9E-17 120.4 9.7 114 9-155 1-117 (166)
159 cd04119 RJL RJL (RabJ-Like) su 99.4 3.2E-12 6.9E-17 119.1 10.1 114 9-155 1-123 (168)
160 COG0486 ThdF Predicted GTPase 99.4 3.9E-12 8.5E-17 133.0 11.6 116 6-156 215-338 (454)
161 cd04149 Arf6 Arf6 subfamily. 99.4 7.7E-12 1.7E-16 117.6 12.6 112 6-155 7-123 (168)
162 cd04147 Ras_dva Ras-dva subfam 99.3 5.6E-12 1.2E-16 121.8 11.8 113 10-156 1-118 (198)
163 cd04140 ARHI_like ARHI subfami 99.3 4.7E-12 1E-16 118.4 10.9 110 9-155 2-121 (165)
164 PTZ00369 Ras-like protein; Pro 99.3 5.5E-12 1.2E-16 120.9 11.6 115 6-155 3-123 (189)
165 cd01893 Miro1 Miro1 subfamily. 99.3 1.5E-11 3.2E-16 115.2 14.2 113 9-156 1-117 (166)
166 cd04138 H_N_K_Ras_like H-Ras/N 99.3 8.6E-12 1.9E-16 115.4 12.3 112 9-155 2-119 (162)
167 cd04175 Rap1 Rap1 subgroup. T 99.3 9.4E-12 2E-16 116.0 12.5 112 9-155 2-119 (164)
168 PLN03118 Rab family protein; P 99.3 7.6E-12 1.6E-16 122.1 12.4 116 6-155 12-133 (211)
169 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.3E-11 2.8E-16 121.6 13.9 123 9-181 40-163 (225)
170 cd00880 Era_like Era (E. coli 99.3 9.2E-12 2E-16 113.9 12.0 110 17-156 2-118 (163)
171 cd04146 RERG_RasL11_like RERG/ 99.3 5.7E-12 1.2E-16 117.7 10.4 112 10-155 1-119 (165)
172 cd04150 Arf1_5_like Arf1-Arf5- 99.3 1.7E-11 3.7E-16 114.1 13.2 109 9-155 1-114 (159)
173 cd04158 ARD1 ARD1 subfamily. 99.3 1.6E-11 3.5E-16 115.4 13.1 108 10-155 1-113 (169)
174 cd04136 Rap_like Rap-like subf 99.3 1E-11 2.3E-16 115.3 11.5 112 9-155 2-119 (163)
175 cd04142 RRP22 RRP22 subfamily. 99.3 6.6E-12 1.4E-16 121.3 10.4 115 9-156 1-130 (198)
176 cd01868 Rab11_like Rab11-like. 99.3 7E-12 1.5E-16 117.0 10.2 115 8-155 3-121 (165)
177 cd04112 Rab26 Rab26 subfamily. 99.3 8.8E-12 1.9E-16 119.7 11.2 115 9-155 1-119 (191)
178 PRK15467 ethanolamine utilizat 99.3 8.8E-12 1.9E-16 116.0 10.7 98 10-155 3-104 (158)
179 PLN00223 ADP-ribosylation fact 99.3 1.9E-11 4.1E-16 116.4 13.2 112 7-156 16-132 (181)
180 cd04110 Rab35 Rab35 subfamily. 99.3 9.4E-12 2E-16 120.4 11.0 116 7-155 5-123 (199)
181 cd01897 NOG NOG1 is a nucleola 99.3 1.1E-11 2.4E-16 115.9 11.0 111 10-155 2-126 (168)
182 smart00177 ARF ARF-like small 99.3 2.1E-11 4.5E-16 115.4 13.0 111 7-155 12-127 (175)
183 cd01878 HflX HflX subfamily. 99.3 1.8E-11 3.9E-16 118.7 12.6 116 7-156 40-167 (204)
184 cd04177 RSR1 RSR1 subgroup. R 99.3 1.4E-11 3.1E-16 115.5 11.4 112 9-155 2-119 (168)
185 cd04176 Rap2 Rap2 subgroup. T 99.3 1.6E-11 3.4E-16 114.3 11.6 112 9-155 2-119 (163)
186 PLN03071 GTP-binding nuclear p 99.3 1.2E-11 2.6E-16 121.5 11.1 117 6-155 11-130 (219)
187 cd04139 RalA_RalB RalA/RalB su 99.3 1.1E-11 2.5E-16 114.9 10.4 113 9-155 1-118 (164)
188 cd01865 Rab3 Rab3 subfamily. 99.3 1.2E-11 2.7E-16 115.6 10.6 114 9-155 2-119 (165)
189 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 1.1E-11 2.3E-16 117.1 10.0 113 8-155 2-120 (172)
190 cd04127 Rab27A Rab27a subfamil 99.3 2.3E-11 5E-16 115.2 12.4 126 7-155 3-133 (180)
191 cd04159 Arl10_like Arl10-like 99.3 1.9E-11 4.1E-16 112.3 11.4 108 11-155 2-114 (159)
192 PF09439 SRPRB: Signal recogni 99.3 1.8E-11 3.8E-16 115.1 11.1 131 10-180 5-147 (181)
193 PRK04213 GTP-binding protein; 99.3 2E-11 4.4E-16 118.0 11.9 110 7-155 8-143 (201)
194 cd04101 RabL4 RabL4 (Rab-like4 99.3 1.3E-11 2.8E-16 114.9 10.1 117 9-155 1-120 (164)
195 cd04126 Rab20 Rab20 subfamily. 99.3 4.5E-11 9.8E-16 117.2 14.2 110 9-156 1-114 (220)
196 cd04156 ARLTS1 ARLTS1 subfamil 99.3 3.7E-11 8E-16 111.4 12.7 109 10-155 1-114 (160)
197 cd04137 RheB Rheb (Ras Homolog 99.3 2E-11 4.3E-16 115.7 10.9 113 9-155 2-119 (180)
198 PTZ00133 ADP-ribosylation fact 99.3 4.4E-11 9.5E-16 114.0 13.2 111 7-155 16-131 (182)
199 cd04121 Rab40 Rab40 subfamily. 99.3 4E-11 8.6E-16 115.0 12.9 116 7-155 5-123 (189)
200 TIGR03156 GTP_HflX GTP-binding 99.3 1.9E-11 4.1E-16 128.0 10.9 114 8-155 189-314 (351)
201 smart00176 RAN Ran (Ras-relate 99.3 1.7E-11 3.7E-16 118.5 9.8 109 17-155 1-112 (200)
202 cd04144 Ras2 Ras2 subfamily. 99.3 2.8E-11 6E-16 116.1 11.2 111 10-155 1-119 (190)
203 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 1.9E-11 4.1E-16 115.2 9.8 111 10-155 2-119 (170)
204 PRK00454 engB GTP-binding prot 99.3 6.6E-11 1.4E-15 113.7 13.8 116 5-156 21-149 (196)
205 cd04155 Arl3 Arl3 subfamily. 99.3 3.4E-11 7.3E-16 113.3 11.3 112 6-155 12-128 (173)
206 cd04135 Tc10 TC10 subfamily. 99.3 1.9E-11 4E-16 115.1 9.5 112 9-155 1-117 (174)
207 PLN03110 Rab GTPase; Provision 99.3 2.6E-11 5.6E-16 118.9 10.5 116 7-155 11-130 (216)
208 cd00876 Ras Ras family. The R 99.3 3.7E-11 8E-16 110.9 10.8 112 10-155 1-117 (160)
209 COG0218 Predicted GTPase [Gene 99.3 8.1E-11 1.8E-15 110.6 13.1 128 7-181 23-164 (200)
210 cd04109 Rab28 Rab28 subfamily. 99.2 2.7E-11 5.8E-16 118.7 10.4 115 9-155 1-122 (215)
211 cd01874 Cdc42 Cdc42 subfamily. 99.2 2.6E-11 5.7E-16 114.8 9.4 113 8-155 1-118 (175)
212 cd01881 Obg_like The Obg-like 99.2 4.4E-11 9.5E-16 112.5 10.9 109 17-156 2-134 (176)
213 PLN03108 Rab family protein; P 99.2 1.2E-10 2.7E-15 113.6 14.2 116 7-155 5-124 (210)
214 cd04118 Rab24 Rab24 subfamily. 99.2 4.4E-11 9.6E-16 114.8 10.9 113 9-155 1-118 (193)
215 TIGR02528 EutP ethanolamine ut 99.2 1.2E-11 2.6E-16 112.5 6.4 96 10-155 2-101 (142)
216 cd00157 Rho Rho (Ras homology) 99.2 3.5E-11 7.5E-16 112.7 9.7 114 9-156 1-118 (171)
217 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 1.2E-10 2.6E-15 112.3 13.5 114 9-156 1-130 (196)
218 cd04132 Rho4_like Rho4-like su 99.2 7.5E-11 1.6E-15 112.6 10.8 113 9-155 1-118 (187)
219 cd04125 RabA_like RabA-like su 99.2 6.8E-11 1.5E-15 113.1 10.4 114 9-155 1-118 (188)
220 cd04102 RabL3 RabL3 (Rab-like3 99.2 9.5E-11 2E-15 113.4 11.3 117 9-155 1-142 (202)
221 cd00882 Ras_like_GTPase Ras-li 99.2 5.5E-11 1.2E-15 107.3 9.0 109 17-156 2-116 (157)
222 cd01850 CDC_Septin CDC/Septin. 99.2 3E-10 6.6E-15 115.2 15.3 125 7-155 3-156 (276)
223 PRK11058 GTPase HflX; Provisio 99.2 9.1E-11 2E-15 125.8 11.9 113 9-155 198-322 (426)
224 cd01871 Rac1_like Rac1-like su 99.2 1.2E-10 2.6E-15 110.2 11.3 113 8-155 1-118 (174)
225 cd01892 Miro2 Miro2 subfamily. 99.2 9E-11 1.9E-15 110.4 10.4 115 6-155 2-121 (169)
226 KOG0080 GTPase Rab18, small G 99.2 2.5E-11 5.5E-16 108.2 6.1 120 3-155 6-130 (209)
227 PF08477 Miro: Miro-like prote 99.2 3.9E-11 8.4E-16 105.6 7.0 113 10-153 1-119 (119)
228 cd04143 Rhes_like Rhes_like su 99.2 2.4E-10 5.2E-15 114.2 13.4 112 9-155 1-126 (247)
229 cd04111 Rab39 Rab39 subfamily. 99.2 1.2E-10 2.6E-15 113.8 11.0 116 8-155 2-122 (211)
230 PF00025 Arf: ADP-ribosylation 99.2 1.5E-10 3.2E-15 109.7 11.3 113 6-156 12-129 (175)
231 cd01875 RhoG RhoG subfamily. 99.2 8.9E-11 1.9E-15 112.8 9.7 113 8-155 3-120 (191)
232 cd04130 Wrch_1 Wrch-1 subfamil 99.2 8.6E-11 1.9E-15 110.8 9.2 113 9-155 1-117 (173)
233 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 1.3E-10 2.8E-15 114.0 10.5 112 9-155 2-118 (222)
234 PRK12298 obgE GTPase CgtA; Rev 99.2 3.3E-10 7.1E-15 120.1 14.2 112 10-155 161-288 (390)
235 cd04133 Rop_like Rop subfamily 99.2 1.2E-10 2.7E-15 110.2 9.9 112 9-155 2-118 (176)
236 smart00174 RHO Rho (Ras homolo 99.2 1.1E-10 2.4E-15 109.8 9.5 67 89-155 45-115 (174)
237 cd04131 Rnd Rnd subfamily. Th 99.2 1.1E-10 2.3E-15 111.0 9.4 112 9-155 2-118 (178)
238 KOG0092 GTPase Rab5/YPT51 and 99.2 1.1E-10 2.3E-15 107.9 8.9 116 7-155 4-123 (200)
239 cd04128 Spg1 Spg1p. Spg1p (se 99.2 1.4E-10 3E-15 110.6 10.1 112 9-155 1-117 (182)
240 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.2 1.4E-10 3.1E-15 110.5 10.1 114 7-155 4-122 (182)
241 PRK12299 obgE GTPase CgtA; Rev 99.2 2.7E-10 5.9E-15 118.4 12.8 112 10-155 160-284 (335)
242 TIGR02729 Obg_CgtA Obg family 99.1 8.7E-10 1.9E-14 114.5 16.3 114 9-156 158-287 (329)
243 cd04117 Rab15 Rab15 subfamily. 99.1 2.5E-10 5.5E-15 106.3 10.7 114 9-155 1-118 (161)
244 PF10662 PduV-EutP: Ethanolami 99.1 1.9E-10 4.1E-15 103.5 9.3 60 93-155 39-102 (143)
245 KOG0052 Translation elongation 99.1 7.5E-12 1.6E-16 127.9 0.1 148 6-181 5-175 (391)
246 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.1 3.5E-10 7.5E-15 111.7 11.3 114 7-155 12-130 (232)
247 cd01870 RhoA_like RhoA-like su 99.1 2.2E-10 4.7E-15 108.0 9.5 112 9-155 2-118 (175)
248 PLN00023 GTP-binding protein; 99.1 2.5E-10 5.5E-15 116.2 10.4 127 7-155 20-164 (334)
249 PTZ00132 GTP-binding nuclear p 99.1 3.4E-10 7.3E-15 110.8 10.8 117 6-155 7-126 (215)
250 COG3596 Predicted GTPase [Gene 99.1 7.9E-10 1.7E-14 108.2 12.6 158 6-212 37-210 (296)
251 cd04134 Rho3 Rho3 subfamily. 99.1 2.8E-10 6.1E-15 109.1 9.4 111 10-155 2-117 (189)
252 COG1084 Predicted GTPase [Gene 99.1 8.9E-10 1.9E-14 110.2 13.1 114 7-156 167-294 (346)
253 KOG0394 Ras-related GTPase [Ge 99.1 7.6E-10 1.6E-14 101.4 10.8 123 1-156 1-132 (210)
254 cd04148 RGK RGK subfamily. Th 99.1 5.1E-10 1.1E-14 110.1 10.6 111 9-155 1-119 (221)
255 cd01876 YihA_EngB The YihA (En 99.1 2.4E-09 5.2E-14 99.3 14.3 109 11-155 2-123 (170)
256 KOG0078 GTP-binding protein SE 99.1 1.8E-09 4E-14 101.7 13.3 125 5-163 9-137 (207)
257 KOG1423 Ras-like GTPase ERA [C 99.1 5.9E-10 1.3E-14 109.9 9.9 117 6-156 70-199 (379)
258 TIGR00437 feoB ferrous iron tr 99.1 3.9E-10 8.5E-15 125.9 9.8 104 18-155 1-112 (591)
259 PF00071 Ras: Ras family; Int 99.1 1.3E-09 2.8E-14 101.2 11.5 120 10-163 1-124 (162)
260 PRK12296 obgE GTPase CgtA; Rev 99.1 1.9E-09 4.2E-14 116.4 14.2 112 9-155 160-297 (500)
261 cd04104 p47_IIGP_like p47 (47- 99.0 1.7E-09 3.8E-14 104.4 12.1 115 9-156 2-121 (197)
262 KOG1191 Mitochondrial GTPase [ 99.0 9.2E-10 2E-14 115.1 10.3 112 7-152 267-387 (531)
263 PRK12297 obgE GTPase CgtA; Rev 99.0 3.1E-09 6.7E-14 113.5 14.4 112 10-155 160-287 (424)
264 KOG0095 GTPase Rab30, small G 99.0 4.1E-09 9E-14 92.9 11.8 114 8-156 7-126 (213)
265 KOG0098 GTPase Rab2, small G p 99.0 9.8E-10 2.1E-14 100.8 8.2 117 7-156 5-125 (216)
266 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.0 3.6E-09 7.8E-14 98.0 11.8 117 7-156 21-142 (221)
267 KOG0086 GTPase Rab4, small G p 99.0 1.5E-09 3.3E-14 95.9 8.8 122 1-155 2-127 (214)
268 cd01853 Toc34_like Toc34-like 99.0 1.1E-08 2.4E-13 102.1 15.9 139 6-178 29-185 (249)
269 KOG0073 GTP-binding ADP-ribosy 99.0 1E-08 2.3E-13 92.2 12.3 113 6-156 14-131 (185)
270 COG1100 GTPase SAR1 and relate 98.9 4.1E-09 8.9E-14 103.1 10.1 116 8-156 5-125 (219)
271 cd01873 RhoBTB RhoBTB subfamil 98.9 6E-09 1.3E-13 100.4 10.9 67 87-155 63-133 (195)
272 cd01896 DRG The developmentall 98.9 8.9E-09 1.9E-13 102.1 12.1 82 10-126 2-90 (233)
273 PRK09866 hypothetical protein; 98.9 1.4E-08 2.9E-13 110.6 14.1 67 89-155 229-302 (741)
274 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 2.8E-08 6E-13 97.7 14.2 134 10-182 1-145 (232)
275 cd04103 Centaurin_gamma Centau 98.9 6.8E-09 1.5E-13 96.6 9.3 107 9-155 1-112 (158)
276 KOG0075 GTP-binding ADP-ribosy 98.9 5.7E-09 1.2E-13 92.0 7.9 113 7-156 19-136 (186)
277 cd04129 Rho2 Rho2 subfamily. 98.9 1E-08 2.3E-13 98.0 10.7 112 9-155 2-118 (187)
278 smart00053 DYNc Dynamin, GTPas 98.9 2.1E-08 4.6E-13 99.1 12.3 67 89-155 124-205 (240)
279 KOG0087 GTPase Rab11/YPT3, sma 98.8 7.6E-09 1.6E-13 97.1 7.9 118 5-155 11-132 (222)
280 KOG0090 Signal recognition par 98.8 1.4E-08 3E-13 95.6 9.0 130 10-180 40-180 (238)
281 KOG1532 GTPase XAB1, interacts 98.8 8.2E-09 1.8E-13 100.3 7.1 88 89-176 115-215 (366)
282 KOG0079 GTP-binding protein H- 98.8 9.1E-09 2E-13 90.7 6.4 118 6-156 6-126 (198)
283 KOG0088 GTPase Rab21, small G 98.8 5.2E-09 1.1E-13 93.2 4.7 116 7-155 12-131 (218)
284 PF03144 GTP_EFTU_D2: Elongati 98.8 2.9E-09 6.3E-14 85.7 2.4 73 382-460 1-74 (74)
285 KOG0070 GTP-binding ADP-ribosy 98.8 2.1E-08 4.6E-13 92.6 8.2 118 6-164 15-137 (181)
286 PRK09435 membrane ATPase/prote 98.7 1.8E-07 4E-12 96.7 14.3 63 85-156 144-208 (332)
287 TIGR02836 spore_IV_A stage IV 98.7 1E-07 2.2E-12 98.9 11.7 134 7-155 16-193 (492)
288 TIGR00991 3a0901s02IAP34 GTP-b 98.7 3.5E-07 7.5E-12 92.9 15.1 116 6-155 36-166 (313)
289 KOG0395 Ras-related GTPase [Ge 98.7 6.1E-08 1.3E-12 93.2 9.1 115 7-156 2-122 (196)
290 KOG0093 GTPase Rab3, small G p 98.7 2.3E-07 5E-12 81.9 11.4 117 7-156 20-140 (193)
291 COG0370 FeoB Fe2+ transport sy 98.7 9E-08 1.9E-12 104.8 10.8 110 9-155 4-121 (653)
292 PF00350 Dynamin_N: Dynamin fa 98.6 4.8E-08 1.1E-12 91.4 6.8 64 89-152 100-168 (168)
293 PRK13768 GTPase; Provisional 98.6 1.4E-07 3E-12 94.6 7.8 68 89-156 96-176 (253)
294 KOG0071 GTP-binding ADP-ribosy 98.5 8.3E-07 1.8E-11 77.9 10.7 120 5-165 14-138 (180)
295 PF04548 AIG1: AIG1 family; I 98.5 1.4E-06 3E-11 85.2 13.6 114 9-156 1-130 (212)
296 COG2262 HflX GTPases [General 98.5 3.3E-07 7.1E-12 94.8 9.5 115 7-155 191-317 (411)
297 PF00735 Septin: Septin; Inte 98.5 1.3E-06 2.9E-11 88.7 13.7 126 7-156 3-156 (281)
298 KOG1489 Predicted GTP-binding 98.5 8.6E-07 1.9E-11 88.4 11.8 108 17-155 202-325 (366)
299 KOG0074 GTP-binding ADP-ribosy 98.5 9.4E-07 2E-11 77.6 8.9 114 6-156 15-133 (185)
300 cd01342 Translation_Factor_II_ 98.4 1.6E-06 3.5E-11 70.0 9.1 72 368-451 1-72 (83)
301 COG5192 BMS1 GTP-binding prote 98.4 7E-07 1.5E-11 94.3 8.5 107 9-156 70-177 (1077)
302 KOG4252 GTP-binding protein [S 98.4 2.7E-07 5.8E-12 84.1 4.7 117 6-155 18-137 (246)
303 PF03029 ATP_bind_1: Conserved 98.4 1.7E-07 3.8E-12 92.9 3.6 66 91-156 92-170 (238)
304 KOG3883 Ras family small GTPas 98.4 4.3E-06 9.3E-11 74.6 11.0 117 7-155 8-131 (198)
305 PTZ00099 rab6; Provisional 98.3 1.1E-06 2.4E-11 83.2 7.4 67 89-155 28-98 (176)
306 KOG0097 GTPase Rab14, small G 98.3 3.7E-06 8E-11 73.7 9.9 116 8-156 11-130 (215)
307 PF05049 IIGP: Interferon-indu 98.3 2E-06 4.3E-11 89.8 9.2 116 5-156 32-155 (376)
308 KOG0076 GTP-binding ADP-ribosy 98.3 9.9E-07 2.1E-11 80.4 5.6 121 6-156 15-140 (197)
309 PTZ00258 GTP-binding protein; 98.2 3.2E-06 6.9E-11 89.2 9.1 99 7-124 20-126 (390)
310 KOG2486 Predicted GTPase [Gene 98.2 3.6E-06 7.8E-11 82.6 8.4 114 7-155 135-261 (320)
311 PRK14722 flhF flagellar biosyn 98.2 4.6E-06 9.9E-11 87.5 9.2 67 89-155 215-294 (374)
312 COG1163 DRG Predicted GTPase [ 98.2 3.2E-05 6.9E-10 77.8 14.5 112 8-155 63-186 (365)
313 COG5019 CDC3 Septin family pro 98.2 2.1E-05 4.4E-10 80.6 12.2 126 7-156 22-176 (373)
314 cd01900 YchF YchF subfamily. 98.1 5.3E-06 1.1E-10 83.8 7.8 93 17-125 4-104 (274)
315 PRK09601 GTP-binding protein Y 98.1 7.2E-06 1.6E-10 85.5 8.9 98 9-125 3-108 (364)
316 TIGR00993 3a0901s04IAP86 chlor 98.1 2.3E-05 4.9E-10 86.3 13.0 115 8-156 118-250 (763)
317 cd03110 Fer4_NifH_child This p 98.1 4.1E-05 8.9E-10 72.5 13.1 66 88-155 91-156 (179)
318 cd03698 eRF3_II_like eRF3_II_l 98.1 1.9E-05 4.2E-10 64.9 9.3 65 367-446 1-65 (83)
319 KOG0096 GTPase Ran/TC4/GSP1 (n 98.1 7E-06 1.5E-10 76.0 7.2 117 7-156 9-128 (216)
320 KOG0077 Vesicle coat complex C 98.1 1.1E-05 2.5E-10 73.0 8.2 114 5-156 17-135 (193)
321 TIGR00750 lao LAO/AO transport 98.1 7.3E-06 1.6E-10 84.4 7.9 63 87-156 124-186 (300)
322 cd03693 EF1_alpha_II EF1_alpha 98.1 2.4E-05 5.2E-10 65.6 9.3 84 365-462 2-88 (91)
323 cd03114 ArgK-like The function 98.1 1.1E-05 2.4E-10 74.1 7.7 59 88-153 90-148 (148)
324 COG0536 Obg Predicted GTPase [ 98.1 5.1E-05 1.1E-09 76.9 12.5 108 14-155 163-288 (369)
325 COG4917 EutP Ethanolamine util 98.0 1.2E-05 2.6E-10 69.6 6.1 59 94-155 41-103 (148)
326 cd03115 SRP The signal recogni 98.0 3.2E-05 7E-10 72.8 9.9 67 87-155 80-152 (173)
327 KOG2655 Septin family protein 98.0 5.2E-05 1.1E-09 78.2 11.6 124 8-156 21-172 (366)
328 KOG0091 GTPase Rab39, small G 98.0 7E-05 1.5E-09 67.7 10.4 67 89-155 57-129 (213)
329 TIGR00073 hypB hydrogenase acc 98.0 3E-05 6.5E-10 75.4 8.9 134 8-155 22-161 (207)
330 KOG0083 GTPase Rab26/Rab37, sm 98.0 3.5E-06 7.6E-11 73.2 2.0 69 87-155 44-116 (192)
331 PRK00771 signal recognition pa 97.9 0.00029 6.4E-09 75.8 16.9 63 90-155 176-245 (437)
332 PF03308 ArgK: ArgK protein; 97.9 9.8E-06 2.1E-10 79.7 5.1 140 7-156 28-181 (266)
333 cd01899 Ygr210 Ygr210 subfamil 97.9 2.9E-05 6.2E-10 80.3 8.6 37 89-125 68-111 (318)
334 cd01858 NGP_1 NGP-1. Autoanti 97.9 1E-05 2.2E-10 75.0 4.9 35 7-44 101-135 (157)
335 PRK09602 translation-associate 97.9 3.1E-05 6.7E-10 82.5 9.1 37 89-125 71-114 (396)
336 cd02036 MinD Bacterial cell di 97.9 6.4E-05 1.4E-09 70.8 10.3 63 91-155 64-127 (179)
337 cd02038 FleN-like FleN is a me 97.9 0.00019 4.2E-09 65.1 12.2 64 90-155 45-110 (139)
338 KOG1954 Endocytosis/signaling 97.9 0.00017 3.6E-09 73.5 12.7 68 89-156 146-225 (532)
339 TIGR01425 SRP54_euk signal rec 97.9 7.5E-05 1.6E-09 79.7 10.7 65 88-155 181-252 (429)
340 KOG1547 Septin CDC10 and relat 97.9 0.00015 3.3E-09 69.7 11.2 124 7-156 45-198 (336)
341 TIGR00064 ftsY signal recognit 97.8 0.0001 2.2E-09 74.7 10.7 65 88-155 153-230 (272)
342 PF03193 DUF258: Protein of un 97.8 8.7E-06 1.9E-10 75.2 2.6 23 10-35 37-59 (161)
343 KOG1707 Predicted Ras related/ 97.8 3.8E-05 8.3E-10 82.5 7.6 117 5-156 6-129 (625)
344 PRK10416 signal recognition pa 97.8 9.6E-05 2.1E-09 76.5 10.2 66 87-155 194-272 (318)
345 KOG3886 GTP-binding protein [S 97.8 4.8E-05 1E-09 72.8 6.9 114 9-155 5-129 (295)
346 cd03112 CobW_like The function 97.8 7.9E-05 1.7E-09 69.2 8.3 63 89-154 86-158 (158)
347 KOG1490 GTP-binding protein CR 97.8 4.9E-05 1.1E-09 80.2 7.4 119 2-156 162-295 (620)
348 KOG0072 GTP-binding ADP-ribosy 97.8 3.3E-05 7.2E-10 68.3 5.1 68 89-156 61-133 (182)
349 KOG0448 Mitofusin 1 GTPase, in 97.8 0.00021 4.4E-09 78.3 12.1 137 6-156 107-275 (749)
350 TIGR00101 ureG urease accessor 97.8 0.00013 2.8E-09 70.5 9.3 58 89-155 91-150 (199)
351 PRK13849 putative crown gall t 97.8 8.7E-05 1.9E-09 73.4 8.2 64 88-153 82-151 (231)
352 PRK14974 cell division protein 97.7 0.00014 2.9E-09 75.7 9.7 65 88-155 221-292 (336)
353 cd04178 Nucleostemin_like Nucl 97.7 3.9E-05 8.4E-10 72.3 5.0 26 8-36 117-142 (172)
354 KOG0393 Ras-related small GTPa 97.7 3E-05 6.4E-10 73.7 4.0 116 7-155 3-122 (198)
355 PF00448 SRP54: SRP54-type pro 97.7 8.2E-05 1.8E-09 71.7 7.1 139 10-155 3-153 (196)
356 COG1703 ArgK Putative periplas 97.7 0.00024 5.2E-09 71.1 10.2 154 6-176 49-217 (323)
357 PRK11889 flhF flagellar biosyn 97.7 0.00019 4E-09 75.3 9.8 137 9-155 242-390 (436)
358 cd01849 YlqF_related_GTPase Yl 97.7 5.4E-05 1.2E-09 70.0 5.3 27 7-36 99-125 (155)
359 cd02037 MRP-like MRP (Multiple 97.7 0.00014 3.1E-09 68.2 7.9 66 88-155 66-134 (169)
360 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 6.5E-05 1.4E-09 68.3 5.0 23 10-35 85-107 (141)
361 cd03111 CpaE_like This protein 97.6 0.00027 5.8E-09 61.0 8.3 59 91-151 44-106 (106)
362 cd04089 eRF3_II eRF3_II: domai 97.6 0.00041 8.9E-09 56.9 8.8 65 367-447 1-65 (82)
363 KOG0081 GTPase Rab27, small G 97.6 9.9E-05 2.2E-09 66.3 5.2 67 90-156 67-138 (219)
364 TIGR00959 ffh signal recogniti 97.6 0.00022 4.8E-09 76.5 8.8 66 87-155 180-252 (428)
365 KOG1673 Ras GTPases [General f 97.6 0.00037 7.9E-09 62.6 8.5 121 8-164 20-143 (205)
366 PRK10867 signal recognition pa 97.5 0.00029 6.2E-09 75.7 9.2 67 86-155 180-253 (433)
367 PRK12288 GTPase RsgA; Reviewed 97.5 6.7E-05 1.4E-09 78.6 3.8 24 11-37 208-231 (347)
368 cd01855 YqeH YqeH. YqeH is an 97.5 0.00011 2.3E-09 70.4 5.0 24 9-35 128-151 (190)
369 PRK12727 flagellar biosynthesi 97.5 0.00096 2.1E-08 72.6 12.3 65 89-155 428-497 (559)
370 TIGR03596 GTPase_YlqF ribosome 97.5 0.00015 3.3E-09 73.8 5.8 25 7-34 117-141 (276)
371 KOG1534 Putative transcription 97.4 0.00018 4E-09 68.0 5.2 138 17-156 9-178 (273)
372 PRK09563 rbgA GTPase YlqF; Rev 97.4 0.00018 4E-09 73.6 5.6 26 7-35 120-145 (287)
373 cd03697 EFTU_II EFTU_II: Elong 97.4 0.00074 1.6E-08 56.0 8.2 64 372-447 5-68 (87)
374 cd03694 GTPBP_II Domain II of 97.4 0.00096 2.1E-08 55.3 8.7 60 378-447 11-70 (87)
375 cd01857 HSR1_MMR1 HSR1/MMR1. 97.4 0.00063 1.4E-08 61.8 7.7 51 105-155 3-55 (141)
376 TIGR00157 ribosome small subun 97.3 0.00019 4.1E-09 71.7 4.4 24 10-36 122-145 (245)
377 cd01851 GBP Guanylate-binding 97.3 0.00062 1.3E-08 67.1 8.0 90 7-125 6-103 (224)
378 cd03696 selB_II selB_II: this 97.3 0.00099 2.1E-08 54.7 7.9 63 371-447 4-66 (83)
379 cd01856 YlqF YlqF. Proteins o 97.3 0.00029 6.2E-09 66.3 5.2 25 8-35 115-139 (171)
380 PHA02518 ParA-like protein; Pr 97.3 0.001 2.3E-08 64.4 8.8 66 88-155 75-146 (211)
381 PRK12289 GTPase RsgA; Reviewed 97.3 0.00018 4E-09 75.4 3.7 24 11-37 175-198 (352)
382 COG1162 Predicted GTPases [Gen 97.3 0.00025 5.4E-09 71.6 4.5 17 17-33 170-186 (301)
383 COG1161 Predicted GTPases [Gen 97.3 0.00029 6.4E-09 73.2 5.0 57 8-101 132-188 (322)
384 cd03688 eIF2_gamma_II eIF2_gam 97.3 0.0015 3.2E-08 55.9 8.2 88 364-456 2-101 (113)
385 cd02042 ParA ParA and ParB of 97.2 0.0017 3.8E-08 55.4 8.7 45 90-136 40-84 (104)
386 COG0378 HypB Ni2+-binding GTPa 97.2 0.00083 1.8E-08 63.3 6.5 128 9-155 14-155 (202)
387 PRK12724 flagellar biosynthesi 97.2 0.00076 1.7E-08 71.6 7.1 65 88-155 298-372 (432)
388 PF07015 VirC1: VirC1 protein; 97.2 0.0022 4.7E-08 62.6 9.6 71 82-154 76-152 (231)
389 PRK12726 flagellar biosynthesi 97.2 0.0016 3.5E-08 68.1 9.1 64 88-155 284-355 (407)
390 COG0523 Putative GTPases (G3E 97.2 0.0021 4.6E-08 66.5 9.9 132 17-156 7-159 (323)
391 PRK10463 hydrogenase nickel in 97.2 0.0012 2.7E-08 66.9 7.9 25 7-34 103-127 (290)
392 cd03695 CysN_NodQ_II CysN_NodQ 97.1 0.0021 4.7E-08 52.5 7.9 53 380-446 13-65 (81)
393 PRK06731 flhF flagellar biosyn 97.1 0.0026 5.6E-08 64.2 10.1 65 88-155 153-224 (270)
394 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.00042 9E-09 71.0 4.3 23 10-35 163-185 (287)
395 PRK14721 flhF flagellar biosyn 97.1 0.0012 2.7E-08 70.5 7.9 64 89-155 269-339 (420)
396 COG3640 CooC CO dehydrogenase 97.1 0.0011 2.5E-08 64.1 6.8 67 86-155 130-198 (255)
397 cd01859 MJ1464 MJ1464. This f 97.1 0.00063 1.4E-08 62.8 4.9 23 8-33 101-123 (156)
398 cd00066 G-alpha G protein alph 97.1 0.0013 2.9E-08 68.2 7.5 67 89-155 160-241 (317)
399 PRK05703 flhF flagellar biosyn 97.0 0.0044 9.6E-08 66.8 11.0 64 89-155 299-370 (424)
400 TIGR03371 cellulose_yhjQ cellu 97.0 0.0057 1.2E-07 60.8 11.1 64 90-155 115-181 (246)
401 PF02492 cobW: CobW/HypB/UreG, 97.0 0.0011 2.5E-08 62.7 5.6 65 89-156 84-155 (178)
402 COG0012 Predicted GTPase, prob 97.0 0.0025 5.5E-08 66.0 8.4 99 8-125 2-109 (372)
403 PRK12723 flagellar biosynthesi 97.0 0.0075 1.6E-07 64.0 12.2 65 88-155 253-325 (388)
404 TIGR03597 GTPase_YqeH ribosome 97.0 0.00099 2.1E-08 70.4 5.4 25 9-36 155-179 (360)
405 PRK13796 GTPase YqeH; Provisio 97.0 0.00085 1.9E-08 71.0 4.9 24 9-35 161-184 (365)
406 smart00275 G_alpha G protein a 97.0 0.0024 5.3E-08 66.9 8.2 68 89-156 183-265 (342)
407 KOG0410 Predicted GTP binding 96.9 0.0021 4.6E-08 64.8 7.2 112 10-155 180-307 (410)
408 PRK08099 bifunctional DNA-bind 96.9 0.0056 1.2E-07 65.5 10.9 28 8-38 219-246 (399)
409 TIGR00092 GTP-binding protein 96.9 0.0047 1E-07 64.8 9.9 98 9-125 3-109 (368)
410 cd01858 NGP_1 NGP-1. Autoanti 96.9 0.0014 3.1E-08 60.6 5.1 49 107-155 2-52 (157)
411 cd01859 MJ1464 MJ1464. This f 96.9 0.0018 3.9E-08 59.7 5.6 51 105-155 4-54 (156)
412 cd02032 Bchl_like This family 96.8 0.0073 1.6E-07 61.1 10.4 65 89-154 115-184 (267)
413 PRK00098 GTPase RsgA; Reviewed 96.7 0.0012 2.5E-08 68.1 3.8 23 10-35 166-188 (298)
414 COG0541 Ffh Signal recognition 96.7 0.004 8.8E-08 65.5 7.7 138 10-155 102-252 (451)
415 PRK06995 flhF flagellar biosyn 96.7 0.0044 9.5E-08 67.4 8.0 65 89-155 334-404 (484)
416 cd03692 mtIF2_IVc mtIF2_IVc: t 96.7 0.0087 1.9E-07 49.2 7.8 57 380-447 13-69 (84)
417 PRK14723 flhF flagellar biosyn 96.7 0.0051 1.1E-07 70.1 8.4 66 89-155 263-336 (767)
418 PRK10818 cell division inhibit 96.6 0.0053 1.2E-07 62.1 7.8 66 88-155 112-186 (270)
419 KOG1491 Predicted GTP-binding 96.6 0.0074 1.6E-07 61.4 8.1 101 6-125 18-126 (391)
420 TIGR01281 DPOR_bchL light-inde 96.5 0.018 3.9E-07 58.2 10.6 66 88-154 114-184 (268)
421 KOG1486 GTP-binding protein DR 96.5 0.0025 5.4E-08 62.0 4.0 85 7-126 61-152 (364)
422 TIGR03596 GTPase_YlqF ribosome 96.5 0.0031 6.7E-08 64.2 4.7 56 98-155 5-61 (276)
423 cd01856 YlqF YlqF. Proteins o 96.5 0.0029 6.3E-08 59.5 4.1 56 98-155 3-59 (171)
424 COG0552 FtsY Signal recognitio 96.4 0.0057 1.2E-07 62.5 6.3 138 7-155 138-297 (340)
425 PF09547 Spore_IV_A: Stage IV 96.4 0.032 6.9E-07 58.8 11.6 131 10-155 17-193 (492)
426 PRK13695 putative NTPase; Prov 96.4 0.018 3.8E-07 54.2 9.1 40 111-152 94-136 (174)
427 cd01983 Fer4_NifH The Fer4_Nif 96.4 0.027 5.9E-07 46.5 9.2 44 91-134 35-79 (99)
428 KOG0447 Dynamin-like GTP bindi 96.3 0.11 2.4E-06 55.9 15.0 146 7-175 307-507 (980)
429 CHL00072 chlL photochlorophyll 96.3 0.016 3.4E-07 59.4 8.7 65 89-154 115-184 (290)
430 TIGR03348 VI_IcmF type VI secr 96.3 0.0069 1.5E-07 73.6 6.8 44 112-155 200-256 (1169)
431 PRK11537 putative GTP-binding 96.2 0.021 4.5E-07 59.3 9.2 135 17-156 10-164 (318)
432 TIGR02475 CobW cobalamin biosy 96.1 0.042 9.2E-07 57.6 10.7 37 89-126 92-136 (341)
433 TIGR01007 eps_fam capsular exo 96.0 0.023 4.9E-07 54.9 7.8 67 88-155 126-193 (204)
434 cd02040 NifH NifH gene encodes 96.0 0.024 5.1E-07 57.2 8.1 38 88-125 115-153 (270)
435 KOG2485 Conserved ATP/GTP bind 96.0 0.0092 2E-07 60.2 4.9 78 7-113 142-220 (335)
436 cd02117 NifH_like This family 95.9 0.014 3E-07 56.9 5.8 66 88-154 115-187 (212)
437 cd03702 IF2_mtIF2_II This fami 95.8 0.045 9.8E-07 46.0 7.7 67 371-452 4-70 (95)
438 cd01855 YqeH YqeH. YqeH is an 95.8 0.0099 2.2E-07 56.8 4.2 56 98-155 19-74 (190)
439 PRK09563 rbgA GTPase YlqF; Rev 95.8 0.0083 1.8E-07 61.4 3.7 57 97-155 7-64 (287)
440 KOG2484 GTPase [General functi 95.7 0.01 2.2E-07 61.6 4.3 59 6-101 250-308 (435)
441 cd04178 Nucleostemin_like Nucl 95.7 0.024 5.3E-07 53.3 6.4 41 115-155 1-43 (172)
442 KOG1424 Predicted GTP-binding 95.7 0.011 2.3E-07 63.3 4.2 34 8-44 314-347 (562)
443 COG1419 FlhF Flagellar GTP-bin 95.7 0.084 1.8E-06 55.7 10.6 139 8-155 203-351 (407)
444 COG1618 Predicted nucleotide k 95.6 0.22 4.8E-06 45.8 11.9 49 105-155 92-143 (179)
445 KOG3022 Predicted ATPase, nucl 95.6 0.038 8.3E-07 54.9 7.4 78 76-154 143-222 (300)
446 KOG2743 Cobalamin synthesis pr 95.5 0.15 3.2E-06 51.3 11.2 152 17-180 63-242 (391)
447 PF06858 NOG1: Nucleolar GTP-b 95.5 0.05 1.1E-06 40.9 6.0 49 105-153 4-58 (58)
448 PRK13232 nifH nitrogenase redu 95.5 0.047 1E-06 55.4 8.1 66 88-153 115-185 (273)
449 PRK13230 nitrogenase reductase 95.4 0.072 1.6E-06 54.2 9.3 38 89-126 116-154 (279)
450 cd01849 YlqF_related_GTPase Yl 95.4 0.02 4.3E-07 52.8 4.6 41 115-155 1-42 (155)
451 PRK05800 cobU adenosylcobinami 95.4 0.095 2.1E-06 49.2 9.1 139 10-185 3-155 (170)
452 PF06564 YhjQ: YhjQ protein; 95.4 0.14 3E-06 50.8 10.6 61 88-155 116-176 (243)
453 KOG4423 GTP-binding protein-li 95.4 0.0011 2.4E-08 61.4 -3.8 116 8-155 25-148 (229)
454 TIGR01969 minD_arch cell divis 95.2 0.058 1.2E-06 53.6 7.6 65 89-155 108-173 (251)
455 cd02034 CooC The accessory pro 94.9 0.039 8.4E-07 48.4 4.7 20 11-33 2-21 (116)
456 COG3523 IcmF Type VI protein s 94.8 0.047 1E-06 65.0 6.4 67 90-156 174-270 (1188)
457 PRK14493 putative bifunctional 94.7 0.068 1.5E-06 54.2 6.4 49 89-140 87-136 (274)
458 PRK01889 GTPase RsgA; Reviewed 94.7 0.025 5.4E-07 59.7 3.5 25 9-36 196-220 (356)
459 KOG0780 Signal recognition par 94.6 0.13 2.8E-06 53.5 8.2 66 87-155 181-253 (483)
460 KOG1533 Predicted GTPase [Gene 94.5 0.039 8.5E-07 53.5 3.8 67 89-155 96-176 (290)
461 KOG3887 Predicted small GTPase 94.5 0.063 1.4E-06 52.2 5.2 73 90-162 75-155 (347)
462 PRK13235 nifH nitrogenase redu 94.4 0.26 5.7E-06 49.9 10.1 66 88-153 116-187 (274)
463 PF13555 AAA_29: P-loop contai 94.3 0.045 9.8E-07 42.1 3.1 17 17-33 29-45 (62)
464 smart00010 small_GTPase Small 94.2 0.13 2.9E-06 44.5 6.5 20 9-31 1-20 (124)
465 TIGR01287 nifH nitrogenase iro 94.2 0.14 3.1E-06 51.9 7.5 63 89-151 115-183 (275)
466 KOG0082 G-protein alpha subuni 94.1 0.12 2.6E-06 53.8 6.8 83 57-155 178-275 (354)
467 TIGR01968 minD_bact septum sit 94.1 0.11 2.4E-06 51.9 6.5 65 89-155 111-176 (261)
468 KOG2484 GTPase [General functi 94.1 0.14 2.9E-06 53.5 7.0 79 92-180 124-205 (435)
469 KOG3859 Septins (P-loop GTPase 94.0 0.42 9.2E-06 47.5 9.9 24 7-33 41-64 (406)
470 PF09140 MipZ: ATPase MipZ; I 94.0 0.27 5.9E-06 48.6 8.6 83 89-181 98-204 (261)
471 KOG2423 Nucleolar GTPase [Gene 94.0 0.14 3.1E-06 53.2 6.9 63 106-175 206-270 (572)
472 KOG2423 Nucleolar GTPase [Gene 93.8 0.055 1.2E-06 56.1 3.5 25 6-33 305-329 (572)
473 CHL00175 minD septum-site dete 93.7 0.15 3.2E-06 51.9 6.6 65 89-155 126-191 (281)
474 PF13207 AAA_17: AAA domain; P 93.7 0.06 1.3E-06 47.0 3.2 23 11-36 2-24 (121)
475 cd03701 IF2_IF5B_II IF2_IF5B_I 93.6 0.51 1.1E-05 39.7 8.6 71 371-457 4-74 (95)
476 TIGR00157 ribosome small subun 93.6 0.077 1.7E-06 53.0 4.2 53 103-155 26-80 (245)
477 PRK12289 GTPase RsgA; Reviewed 93.5 0.12 2.6E-06 54.4 5.7 48 108-155 84-133 (352)
478 TIGR03499 FlhF flagellar biosy 93.4 0.059 1.3E-06 55.0 3.1 23 9-34 195-217 (282)
479 PRK01889 GTPase RsgA; Reviewed 93.3 0.16 3.5E-06 53.6 6.3 45 111-155 110-155 (356)
480 TIGR03029 EpsG chain length de 93.3 0.23 5.1E-06 50.3 7.3 62 89-151 212-274 (274)
481 cd02035 ArsA ArsA ATPase funct 93.3 0.5 1.1E-05 46.2 9.3 67 89-155 113-183 (217)
482 COG1136 SalX ABC-type antimicr 93.2 0.076 1.6E-06 51.9 3.4 28 10-44 33-60 (226)
483 PRK07261 topology modulation p 93.1 0.082 1.8E-06 49.7 3.4 22 10-34 2-23 (171)
484 COG1149 MinD superfamily P-loo 93.1 0.27 5.9E-06 48.9 7.0 64 90-155 164-227 (284)
485 cd03116 MobB Molybdenum is an 93.0 0.35 7.6E-06 44.9 7.4 22 10-34 3-24 (159)
486 PRK08118 topology modulation p 93.0 0.089 1.9E-06 49.2 3.4 24 10-36 3-26 (167)
487 PF13671 AAA_33: AAA domain; P 92.9 0.084 1.8E-06 47.5 3.0 20 17-36 5-24 (143)
488 cd00544 CobU Adenosylcobinamid 92.9 1.1 2.3E-05 42.1 10.6 43 139-185 113-155 (169)
489 cd02019 NK Nucleoside/nucleoti 92.8 0.087 1.9E-06 41.4 2.6 20 11-33 2-21 (69)
490 PRK10751 molybdopterin-guanine 92.7 0.4 8.8E-06 45.1 7.3 22 10-34 8-29 (173)
491 cd01854 YjeQ_engC YjeQ/EngC. 92.7 0.14 3E-06 52.4 4.6 45 111-155 76-122 (287)
492 PF00503 G-alpha: G-protein al 92.6 0.16 3.4E-06 54.4 5.1 67 89-155 235-316 (389)
493 KOG1707 Predicted Ras related/ 92.6 0.71 1.5E-05 50.6 9.9 114 7-156 424-540 (625)
494 PRK00098 GTPase RsgA; Reviewed 92.5 0.16 3.5E-06 52.3 4.9 46 110-155 77-124 (298)
495 COG1126 GlnQ ABC-type polar am 92.5 0.092 2E-06 50.6 2.7 19 10-31 30-48 (240)
496 cd03238 ABC_UvrA The excision 92.5 0.1 2.3E-06 49.2 3.1 24 10-36 23-46 (176)
497 COG0563 Adk Adenylate kinase a 92.4 0.12 2.6E-06 48.9 3.4 24 10-36 2-25 (178)
498 PF04665 Pox_A32: Poxvirus A32 92.4 0.1 2.2E-06 51.7 2.9 30 4-36 9-38 (241)
499 COG1120 FepC ABC-type cobalami 92.3 0.35 7.5E-06 48.4 6.7 20 10-32 30-49 (258)
500 cd03703 aeIF5B_II aeIF5B_II: T 92.2 0.67 1.5E-05 39.9 7.4 68 377-452 10-86 (110)
No 1
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-116 Score=890.14 Aligned_cols=569 Identities=65% Similarity=1.040 Sum_probs=545.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.++.+ ++|+|||||||+++|...+|.|....+|+++++|.+++||+|||||+++.+++.++..+..++......+..
T Consensus 20 RNmSV---IAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 20 RNMSV---IAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred ccceE---EEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 34555 999999999999999999999998888989999999999999999999999999987766677777777888
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHHHH
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~~~ 168 (584)
+..||+||.|||+||.+|+-.|||+.|||++|||+.+|++.||+++++|+..+++.+++|+|||||...+++++.++.|+
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLyq 176 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELYQ 176 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCCCe
Q 007929 169 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 248 (584)
Q Consensus 169 ~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~~~ 248 (584)
.|+++++.+|.++++|++.++|++++.|.+++|.|+|+++||+|++++||..|.+||++|..+|..++||+++|++++++
T Consensus 177 tf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk 256 (842)
T KOG0469|consen 177 TFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTKK 256 (842)
T ss_pred HHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCCc
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecC---CCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHH
Q 007929 249 WTSRN---TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (584)
Q Consensus 249 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LL 325 (584)
|.... .++ ..++.|+.|+++|++++++++.+...+.+-.+|+.+++.+..++....+++|++.+|++|+|...+||
T Consensus 257 ~~~s~t~~~gn-~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadall 335 (842)
T KOG0469|consen 257 WSKSATDAEGN-PLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALL 335 (842)
T ss_pred ccccccccccC-ccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHHHHH
Confidence 98764 233 57899999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcC
Q 007929 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (584)
Q Consensus 326 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~ 405 (584)
+||.-+||||..+|+||...+|+|+.+++.+.+++.|||++|+..||.|+.++.+.|+|++|+|||||++.+|+.+++.|
T Consensus 336 emIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqg 415 (842)
T KOG0469|consen 336 EMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQG 415 (842)
T ss_pred HHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeC
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccceEeccCCCCCcccccccccCCCceEEEEE
Q 007929 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAV 485 (584)
Q Consensus 406 ~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~ai 485 (584)
|||.+|++|+.+...|.+..+|||+..++++.++||+|+++.|++++..+|||+++.. .+..++.++|+.+|++++||
T Consensus 416 PnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e--~AHNmrvMKFSVSPVV~VAV 493 (842)
T KOG0469|consen 416 PNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSE--AAHNMRVMKFSVSPVVRVAV 493 (842)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehh--hhccceEEEeeccceEEEEE
Confidence 9999999999888888899999999999999999999999999999999999999877 77888999999999999999
Q ss_pred EeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeEeeeecccc
Q 007929 486 QCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSC 565 (584)
Q Consensus 486 ep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yrETi~~~~~ 565 (584)
|++++.|++||.++|.||++.||...+..+|+||++|.|.||||||+|+.+|++.|+ +|.++.|+|.|+||||+.+.++
T Consensus 494 e~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedhA-~iPlk~sdPvVsYrEtvs~~ss 572 (842)
T KOG0469|consen 494 EAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHA-CIPLKKSDPVVSYRETVSEESS 572 (842)
T ss_pred ecCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhccc-CCceecCCCeeeeecccccccc
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceeeecCCCCCceeEEEeC
Q 007929 566 RTVMSKSPNKHNRRSCRGN 584 (584)
Q Consensus 566 ~~~~~~~~n~~~~~~~~~~ 584 (584)
..+++|||||||||||.|.
T Consensus 573 ~~~lsKSpNKHNRi~mtae 591 (842)
T KOG0469|consen 573 QTCLSKSPNKHNRIYMTAE 591 (842)
T ss_pred hhhhccCCcccceeEEecc
Confidence 9999999999999999874
No 2
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=5e-102 Score=888.46 Aligned_cols=566 Identities=67% Similarity=1.068 Sum_probs=504.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+..+||| +||+|||||||+++||+.+|.+++...|.++++|++++|++||+|++++.+++.|... .....
T Consensus 17 ~~irni~i---iGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~------~~~~~ 87 (836)
T PTZ00416 17 DQIRNMSV---IAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHD------LEDGD 87 (836)
T ss_pred cCcCEEEE---ECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecc------ccccc
Confidence 45669999 9999999999999999999999988888778899999999999999999999998721 11123
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 165 (584)
+++++.|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+++|+||||+...+++++|++
T Consensus 88 ~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~ 167 (836)
T PTZ00416 88 DKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEE 167 (836)
T ss_pred CCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcC
Q 007929 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~ 245 (584)
+|++|+++++++|..++.|+.+...+..+.|.++||||+|+.+||+|++++|++.|+.++++++..+.+++||++||++.
T Consensus 168 ~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~ 247 (836)
T PTZ00416 168 IYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAK 247 (836)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCC
Confidence 99999999999999997765432223357899999999999999999999999999999999999999999999999887
Q ss_pred CCeeeecC--CCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHH
Q 007929 246 TRKWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (584)
Q Consensus 246 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~ 323 (584)
++++...+ .....+++.|+++++++||+|++++++.||++|++||++++++++++++....+.|+++++++|+|++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~ 327 (836)
T PTZ00416 248 TKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADT 327 (836)
T ss_pred CCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHH
Confidence 77665543 1211468999999999999999999999999999999987799999986544568999999999999999
Q ss_pred HHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEE
Q 007929 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (584)
Q Consensus 324 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v 403 (584)
|||+|++++|||.+++..+...++.+..+++....++.||+++|++|+|||+.++++.|+|++|+|||||+|+.||.|++
T Consensus 328 Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v 407 (836)
T PTZ00416 328 LLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRI 407 (836)
T ss_pred HHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEE
Confidence 99999999999998777666655554333334456789999999999999999999999988999999999999999999
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccceEeccCCCCCcccccccccCCCceEEE
Q 007929 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRV 483 (584)
Q Consensus 404 ~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~ 483 (584)
+|+|++.+.+++....+|++||.++|++..+|++|+|||||+|.||+++++++|||++.. ...++.++.++++|++++
T Consensus 408 ~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~~--~~~~l~~i~~~~~Pv~~v 485 (836)
T PTZ00416 408 QGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTSE--TAHNIRDMKYSVSPVVRV 485 (836)
T ss_pred eCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCCC--CcccccccccCCCCeEEE
Confidence 999988765544433469999999999999999999999999999998666899998876 556677777765899999
Q ss_pred EEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeEeeeecc
Q 007929 484 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 563 (584)
Q Consensus 484 aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yrETi~~~ 563 (584)
+|+|.+++|++||.+||++|.+|||+|.++.+||||++|+||||+|||+|++||+++|+ +|+|++++|+|+|||||.++
T Consensus 486 aIep~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f~-~vev~~s~P~V~yrETI~~~ 564 (836)
T PTZ00416 486 AVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDYA-NIDIIVSDPVVSYRETVTEE 564 (836)
T ss_pred EEEECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHhc-CcceEecCCEEEEEEEeccc
Confidence 99999999999999999999999999999778999999999999999999999999997 79999999999999999999
Q ss_pred ccceeeecCCCCCceeEEEe
Q 007929 564 SCRTVMSKSPNKHNRRSCRG 583 (584)
Q Consensus 564 ~~~~~~~~~~n~~~~~~~~~ 583 (584)
++..+..++++++|++++.+
T Consensus 565 s~~~~~~~~~~~~~~v~~~~ 584 (836)
T PTZ00416 565 SSQTCLSKSPNKHNRLYMKA 584 (836)
T ss_pred ccceEEEECCCCCeeEEEEE
Confidence 98888889999999999875
No 3
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=2.3e-101 Score=884.84 Aligned_cols=575 Identities=91% Similarity=1.372 Sum_probs=509.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+..+||| +||+|||||||+++||+.+|.+.+...|+++++|++++|++||+|++++.+++.|......+.......
T Consensus 17 ~~Irni~i---iGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 17 HNIRNMSV---IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred cCccEEEE---EcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 46679999 999999999999999999999999888888899999999999999999999999963211111111123
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 165 (584)
+.++++|||||||||.||..++.+|++.+|+||+||||.+|++.||+++|+++.+.++|+++|+||||+...++++++++
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~ 173 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcC
Q 007929 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~ 245 (584)
+|++|+++++++|..++.|..+.++++.+.|..+||.|+|+.+||+|++..|+..|..+++++.+.+.+++||++||+++
T Consensus 174 ~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~ 253 (843)
T PLN00116 174 AYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCC
Confidence 99999999999999988887555556678899999999999999999999999999999999999999999999999988
Q ss_pred CCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHH
Q 007929 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (584)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LL 325 (584)
++++...+...+...+.|++++++++|+|++++++.|+++|++|+++++++|+.+|+....+++++.++..|+|..++||
T Consensus 254 ~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Ll 333 (843)
T PLN00116 254 TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALL 333 (843)
T ss_pred CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHH
Confidence 87776554111134678999999999999999999999999999999888999999987889999999999999999999
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcC
Q 007929 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (584)
Q Consensus 326 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~ 405 (584)
|+|++++|||.+++.++...++.+...++....++.||+++|++|+|||+..+++.|++++|+|||||+|++||.|+++|
T Consensus 334 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~ 413 (843)
T PLN00116 334 EMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMG 413 (843)
T ss_pred HHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeC
Confidence 99999999999888777777766543344445788999999999999999999988888999999999999999999999
Q ss_pred CCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccceEeccCCCCCcccccccccCCCceEEEEE
Q 007929 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAV 485 (584)
Q Consensus 406 ~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~ai 485 (584)
+|++.+++++.+.++|++||.++|++.++|++|+|||||+|.|++++.++++||++..+....++.++.+|.+|+++++|
T Consensus 414 ~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv~~~aI 493 (843)
T PLN00116 414 PNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRVAV 493 (843)
T ss_pred CCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCCceEEEEE
Confidence 99887766566677999999999999999999999999999999986444449987541124556677776589999999
Q ss_pred EeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeEeeeecccc
Q 007929 486 QCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSC 565 (584)
Q Consensus 486 ep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yrETi~~~~~ 565 (584)
||.+++|++||.+||++|.+|||+|+++.+||||++|+||||+|||+|++||+++|+++|+|++++|+|+|||||.++++
T Consensus 494 eP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~yrETI~~~~~ 573 (843)
T PLN00116 494 QCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRETVLEKSC 573 (843)
T ss_pred EECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEEEeccccccc
Confidence 99999999999999999999999999977899999999999999999999999999546999999999999999999877
Q ss_pred ceeeecCCCCCceeEEEe
Q 007929 566 RTVMSKSPNKHNRRSCRG 583 (584)
Q Consensus 566 ~~~~~~~~n~~~~~~~~~ 583 (584)
.....+.+++|+++++++
T Consensus 574 ~~~~~~~~~~~~~v~l~i 591 (843)
T PLN00116 574 RTVMSKSPNKHNRLYMEA 591 (843)
T ss_pred CcEEEecCCceEEEEEEE
Confidence 655567799999999975
No 4
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-91 Score=766.48 Aligned_cols=483 Identities=35% Similarity=0.509 Sum_probs=415.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCC--CeeeeCChhhHhhhccceecceEEEEeecchhhhhcccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAG--DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g--~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~ 83 (584)
.+..||+| +||.|||||||+++||+.+|.+.+.+.. +.+++|++++|++|||||.++.+++.|+
T Consensus 8 ~~~RNigI---~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~----------- 73 (697)
T COG0480 8 ERIRNIGI---VAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWK----------- 73 (697)
T ss_pred ccceEEEE---EeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc-----------
Confidence 36678999 9999999999999999999999985432 4679999999999999999999999999
Q ss_pred cCCCCc-eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCC
Q 007929 84 ERQGNE-YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (584)
Q Consensus 84 ~~~~~~-~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~ 162 (584)
+ ++|||||||||+||..|+.++|+++|+||+||||++|+++||+++|+++.++++|+++|+|||||.+
T Consensus 74 -----~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~------ 142 (697)
T COG0480 74 -----GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLG------ 142 (697)
T ss_pred -----CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccc------
Confidence 5 9999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCccc
Q 007929 163 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 242 (584)
Q Consensus 163 ~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~ 242 (584)
++|...++++..+|. . .|...|+|+++... |. ..+|+..+.++.|++.
T Consensus 143 -----a~~~~~~~~l~~~l~--------~---~~~~v~~pIg~~~~--------f~------g~idl~~~~~~~~~~~-- 190 (697)
T COG0480 143 -----ADFYLVVEQLKERLG--------A---NPVPVQLPIGAEEE--------FE------GVIDLVEMKAVAFGDG-- 190 (697)
T ss_pred -----cChhhhHHHHHHHhC--------C---CceeeeccccCccc--------cC------ceeEhhhcCeEEEcCC--
Confidence 566677777777762 1 22334788877431 11 1267888888888731
Q ss_pred CcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhccc-
Q 007929 243 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWLPA- 320 (584)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~P~- 320 (584)
....|. .+|....+...+.|.++++++++.|+++||+||++ .+++.+++. ++|++.+.. .++|+
T Consensus 191 --~~~~~~-------~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g--~e~~~~~i~---~~i~~~~~~~~~~pvl 256 (697)
T COG0480 191 --AKYEWI-------EIPADLKEIAEEAREKLLEALAEFDEELMEKYLEG--EEPTEEEIK---KALRKGTIAGKIVPVL 256 (697)
T ss_pred --ccccee-------eCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcC--CCccHHHHH---HHHHHhhhccceeeEE
Confidence 111232 35677777778899999999999999999999999 889999988 677777654 66674
Q ss_pred ---------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccc-cccCCCCCeEEEEEeeeecCCCCceeEEEEe
Q 007929 321 ---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAI-RNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 390 (584)
Q Consensus 321 ---------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV 390 (584)
++.|||++++++|+|.+.+.+. |..+++..+.+ ..+++++||+|+|||+..+++.|+ ++|+||
T Consensus 257 ~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~------g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~-l~~~Rv 329 (697)
T COG0480 257 CGSAFKNKGVQPLLDAVVDYLPSPLDVPPIK------GDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK-LTFVRV 329 (697)
T ss_pred eeecccCCcHHHHHHHHHHHCCChhhccccc------ccCCccccchhcccCCCCCceEEEEEEeEecCCCCe-EEEEEE
Confidence 7999999999999999886333 32222222222 244668999999999999999999 999999
Q ss_pred EeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCccc
Q 007929 391 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHP 469 (584)
Q Consensus 391 ~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~ 469 (584)
|||+|++|+.|+ |.+.+++ +||++|+.++|++++++++++||||+++.||+++ .+| |+|+.+ .+..
T Consensus 330 ysGtl~~G~~v~----n~~~~~~-----erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~--~tGdTl~~~~--~~v~ 396 (697)
T COG0480 330 YSGTLKSGSEVL----NSTKGKK-----ERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA--TTGDTLCDEN--KPVI 396 (697)
T ss_pred eccEEcCCCEEE----eCCCCcc-----EEEEEEEEccCCceeecccccCccEEEEEccccc--ccCCeeecCC--Cccc
Confidence 999999999999 5555555 6999999999999999999999999999999997 688 999876 5678
Q ss_pred ccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEE
Q 007929 470 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEII 548 (584)
Q Consensus 470 ~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~ 548 (584)
+..+.+| +|+++++|+|++++|++||..||++|++|||++.++.| ||||++|+||||||||++++||+++| ||+++
T Consensus 397 ~~~~~~p-ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~--~Vev~ 473 (697)
T COG0480 397 LESMEFP-EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREF--GVEVE 473 (697)
T ss_pred cccccCC-CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhc--CceEE
Confidence 8999998 99999999999999999999999999999999999995 99999999999999999999999999 99999
Q ss_pred EcCcEEeeEeeeeccccceee-----ecCCCCCceeEEEe
Q 007929 549 KSDPVVSFRETVLEKSCRTVM-----SKSPNKHNRRSCRG 583 (584)
Q Consensus 549 ~~~p~V~yrETi~~~~~~~~~-----~~~~n~~~~~~~~~ 583 (584)
+++|+|+|||||++++. ... ++.+|+||++|+..
T Consensus 474 ~~~PqV~YrETi~~~~~-~~~~~~kqsgg~~q~~~v~i~~ 512 (697)
T COG0480 474 VGKPQVAYRETIRKKSE-VEGKHKKQSGGPGQYGHVYIEI 512 (697)
T ss_pred ecCCeeEEEEeeccccc-ceeeeeeccCCCCcccEEEEEE
Confidence 99999999999999888 444 55799999999864
No 5
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-88 Score=700.89 Aligned_cols=560 Identities=36% Similarity=0.621 Sum_probs=514.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccc-cCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
.+.++|++ +||-+||||+|.+.|..+++--.+. .....+++|.+..|++||+||++...++... .
T Consensus 126 ~~irnV~l---~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~-----------D 191 (971)
T KOG0468|consen 126 ERIRNVGL---VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLS-----------D 191 (971)
T ss_pred ceEEEEEE---eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEe-----------c
Confidence 35678888 9999999999999999888733221 1113589999999999999999999998766 3
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHH
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~ 164 (584)
.+++++.+|++|||||++|+.|+.++++.+|++++|||+.+|+..+|+++++++.+.++|+++|+||+||.+.+++++|.
T Consensus 192 ~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~ 271 (971)
T KOG0468|consen 192 SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPM 271 (971)
T ss_pred CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChH
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhc-CCChHhHHHHhhcCcccC
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKF-GVDESKMMERLWGENFFD 243 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~-~vd~~~~~~~~~~~~~~~ 243 (584)
++|-+++.++++||..+++|+.. ....++|..+||.|+|+.-||||++++|+.+|...+ ++|.+.+..++||+.||+
T Consensus 272 DAY~KLrHii~~iN~~is~~s~~--~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~ 349 (971)
T KOG0468|consen 272 DAYYKLRHIIDEINNLISTFSKD--DNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFH 349 (971)
T ss_pred HHHHHHHHHHHHhcchhhhcccc--cccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhcccccc
Confidence 99999999999999999888754 233578999999999999999999999999998875 579999999999999999
Q ss_pred cCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHH
Q 007929 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (584)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~ 323 (584)
.++.+|...+... ..+++|++||++|.|+|++.+....++.+...+.+|++.|+.++++.+.+.|++-++++||.....
T Consensus 350 ~ktrkF~kk~~~~-~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sg 428 (971)
T KOG0468|consen 350 SKTRKFVKKPPDG-SGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESG 428 (971)
T ss_pred ccccccccCCCCC-cccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhh
Confidence 9998888765332 367899999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEE
Q 007929 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (584)
Q Consensus 324 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v 403 (584)
+.|++++++|||.+....+....|.|..+..+.+.+..|++++|++.++.|++...+.-+|.+|+||+||+++.|+.|.+
T Consensus 429 fvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~v 508 (971)
T KOG0468|consen 429 FVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRV 508 (971)
T ss_pred hhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeE
Confidence 99999999999999887788777888777778889999999999999999999988888899999999999999999999
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccceEeccCCC-CCcccccccccCCCceEE
Q 007929 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKE-VDAHPIRAMKFSVSPVVR 482 (584)
Q Consensus 404 ~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tgTl~~~~~-~~~~~~~~~~~~~~Pv~~ 482 (584)
+|.|+.....+|.....|+++++..+++..+|.+|+||.+|.|.|+++.+.+|.|+++.+. .+..-++++.+...|+++
T Consensus 509 lgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvK 588 (971)
T KOG0468|consen 509 LGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVK 588 (971)
T ss_pred eeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEE
Confidence 9999998888888889999999999999999999999999999999999999999887641 134457888888899999
Q ss_pred EEEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeEeeeec
Q 007929 483 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE 562 (584)
Q Consensus 483 ~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yrETi~~ 562 (584)
++++|.+|++++||.+||++.++.+|.+....+|+||++|.|.||+.|+|++.+||.-|+ .|++++++|.|.|.||..+
T Consensus 589 iaveP~nPsELPKmldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~ys-eieikvaDPvv~F~Et~ve 667 (971)
T KOG0468|consen 589 VAVEPLNPSELPKMLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSYS-EIEIKVADPVVRFCETVVE 667 (971)
T ss_pred EEeccCChhhhhHHHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHHh-hhceeecCceeEEEEeeec
Confidence 999999999999999999999999999988889999999999999999999999999999 9999999999999999999
Q ss_pred cccceeeecCCCCCceeEEEe
Q 007929 563 KSCRTVMSKSPNKHNRRSCRG 583 (584)
Q Consensus 563 ~~~~~~~~~~~n~~~~~~~~~ 583 (584)
+++..|.+++|||+|+|.|+|
T Consensus 668 tssikcfaetpnkknkItmia 688 (971)
T KOG0468|consen 668 TSSIKCFAETPNKKNKITMIA 688 (971)
T ss_pred ccchhhhccCCCccCceeeee
Confidence 999999999999999999987
No 6
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-89 Score=712.58 Aligned_cols=474 Identities=25% Similarity=0.384 Sum_probs=416.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~ 83 (584)
....+|.| .+|.+|||||+++++||++|.+...+. ++.+.+|+.+.|++|||||+++...+.|.
T Consensus 37 ~k~RNIgi---~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~----------- 102 (721)
T KOG0465|consen 37 NKIRNIGI---SAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR----------- 102 (721)
T ss_pred hhhcccce---EEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec-----------
Confidence 35568888 999999999999999999999887653 34689999999999999999999999999
Q ss_pred cCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCH
Q 007929 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (584)
Q Consensus 84 ~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~ 163 (584)
+++||+||||||.||.-|+++||++.||||+|+|++.|++.||..+|+|+.++++|.|.|+|||||.+
T Consensus 103 -----~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmG------- 170 (721)
T KOG0465|consen 103 -----DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMG------- 170 (721)
T ss_pred -----cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcC-------
Confidence 89999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccC
Q 007929 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (584)
Q Consensus 164 ~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~ 243 (584)
+++.+.+.+++..|. ..|+..|+|+++... |. +.+|+...++.+|.+.
T Consensus 171 ----a~~~~~l~~i~~kl~-----------~~~a~vqiPig~e~~--------f~------GvvDlv~~kai~~~g~--- 218 (721)
T KOG0465|consen 171 ----ASPFRTLNQIRTKLN-----------HKPAVVQIPIGSESN--------FK------GVVDLVNGKAIYWDGE--- 218 (721)
T ss_pred ----CChHHHHHHHHhhcC-----------CchheeEcccccccc--------ch------hHHhhhhceEEEEcCC---
Confidence 677888999988872 446667899988752 22 2479999999999642
Q ss_pred cCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-Hhhccc--
Q 007929 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-- 320 (584)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~-~~~~P~-- 320 (584)
.+..+... ++|+...+.+.+.|.+|+|.+++.|+++.|.||++ .+++.++++ .++++..+ +.|+|+
T Consensus 219 -~g~~i~~~-----eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee--~~ps~~~l~---~aIRr~Ti~r~fvPVl~ 287 (721)
T KOG0465|consen 219 -NGEIVRKD-----EIPEDLEELAEEKRQALIETLADVDETLAEMFLEE--EEPSAQQLK---AAIRRATIKRSFVPVLC 287 (721)
T ss_pred -CCceeEec-----cCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcc--CCCCHHHHH---HHHHHHHhhcceeeEEe
Confidence 22223333 48999999999999999999999999999999999 899999998 88888866 589997
Q ss_pred --------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCC-CeEEEEEeeeecCCCCceeEEEEeE
Q 007929 321 --------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEG-PLMLYVSKMIPASDKGRFFAFGRVF 391 (584)
Q Consensus 321 --------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pl~~~VfK~~~~~~~g~~l~~~RV~ 391 (584)
+|+|||+|++|||+|.+...+.+.+-.+ ++ ++....+.+|+ ||+|++||+..+++ |+ ++|+|||
T Consensus 288 GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~----~~-ekv~l~~~~d~~Pfv~LAFKle~g~f-Gq-LTyvRvY 360 (721)
T KOG0465|consen 288 GSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETN----SK-EKVTLSPSRDKDPFVALAFKLEEGRF-GQ-LTYVRVY 360 (721)
T ss_pred chhhcccCcchHHHHHHHhCCChhhhcccccccCCC----Cc-cceEeccCCCCCceeeeEEEeeecCc-cc-eEEEEEe
Confidence 8999999999999999988776652111 11 12333434444 99999999999999 98 9999999
Q ss_pred eeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCcccc
Q 007929 392 SGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPI 470 (584)
Q Consensus 392 sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~ 470 (584)
+|+|++||.|| |.+++++ +|+++|+.||+.+.++|+++.||||||+.|++. .+| |+++..+ ....+
T Consensus 361 qG~L~kG~~iy----N~rtgKK-----vrv~RL~rmHa~~medV~~v~AG~I~alfGidc---asGDTftd~~~-~~~~m 427 (721)
T KOG0465|consen 361 QGTLSKGDTIY----NVRTGKK-----VRVGRLVRMHANDMEDVNEVLAGDICALFGIDC---ASGDTFTDKQN-LALSM 427 (721)
T ss_pred eeeecCCcEEE----ecCCCce-----eEhHHHhHhcccccchhhhhhccceeeeecccc---ccCceeccCcc-cccee
Confidence 99999999999 9999988 699999999999999999999999999999954 688 9999732 56778
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEE
Q 007929 471 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIK 549 (584)
Q Consensus 471 ~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~ 549 (584)
..+..| +||++++|+|.+++|.+++++||.++.+|||||++.+| |+||++|+||||||||+..+||+++| ++++++
T Consensus 428 ~si~vP-ePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy--~~~~~~ 504 (721)
T KOG0465|consen 428 ESIHIP-EPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREY--KVDAEL 504 (721)
T ss_pred eeeecC-CCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHh--CCcccc
Confidence 888777 99999999999999999999999999999999999996 99999999999999999999999999 999999
Q ss_pred cCcEEeeEeeeeccccceeeec
Q 007929 550 SDPVVSFRETVLEKSCRTVMSK 571 (584)
Q Consensus 550 ~~p~V~yrETi~~~~~~~~~~~ 571 (584)
++|+|+|||||..++.+....|
T Consensus 505 Gkp~VayRETi~~~~~f~~~hK 526 (721)
T KOG0465|consen 505 GKPQVAYRETITSPVEFDYTHK 526 (721)
T ss_pred CCceeeehhhcCCcccceeeec
Confidence 9999999999998877654444
No 7
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.1e-80 Score=703.35 Aligned_cols=485 Identities=28% Similarity=0.390 Sum_probs=411.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCcccccc--CCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
+.++|+| +||+|+|||||+++|++.+|.+.+.+ ..+++++|+.++|++||+|++++..++.|+
T Consensus 7 ~irni~i---iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~------------ 71 (691)
T PRK12739 7 KTRNIGI---MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------ 71 (691)
T ss_pred CeeEEEE---ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC------------
Confidence 5678999 99999999999999999999876543 224689999999999999999999999998
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHH
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~ 164 (584)
+++++|||||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+++|+||||+..
T Consensus 72 ----~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~-------- 139 (691)
T PRK12739 72 ----GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG-------- 139 (691)
T ss_pred ----CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC--------
Confidence 89999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
.++.+++++++..+. ..+...++|++.... |. ..+|+..+..++|++..
T Consensus 140 ---~~~~~~~~~i~~~l~-----------~~~~~~~iPis~~~~--------f~------g~vd~~~~~~~~~~~~~--- 188 (691)
T PRK12739 140 ---ADFFRSVEQIKDRLG-----------ANAVPIQLPIGAEDD--------FK------GVIDLIKMKAIIWDDET--- 188 (691)
T ss_pred ---CCHHHHHHHHHHHhC-----------CCceeEEeccccccc--------ce------EEEEcchhhhhhccCCC---
Confidence 346667778877762 112223667655331 21 24788899999997641
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhccc---
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWLPA--- 320 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~P~--- 320 (584)
.+.++... .++..+.+++++++++|+|.+++.||++||+||++ .+++.+++. .+|.+.++. +|+|+
T Consensus 189 ~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~--~~~~~~~l~---~~l~~~~~~~~~~Pv~~g 258 (691)
T PRK12739 189 LGAKYEEE-----DIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEG--EEITEEEIK---AAIRKATINMEFFPVLCG 258 (691)
T ss_pred CCCeeEEc-----CCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhcc--CCCCHHHHH---HHHHHHHHcCCEEEEEec
Confidence 12334433 36788899999999999999999999999999998 789998887 667777664 89997
Q ss_pred -------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEee
Q 007929 321 -------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSG 393 (584)
Q Consensus 321 -------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sG 393 (584)
++.|||+|++++|+|.+++..+....... ....+.|++++||+++|||++++++.|+ ++|+|||||
T Consensus 259 Sa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~------~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sG 331 (691)
T PRK12739 259 SAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTE------EEIERPASDDEPFAALAFKIMTDPFVGR-LTFFRVYSG 331 (691)
T ss_pred cccCCccHHHHHHHHHHHCCChhhccccccccCCCC------cceeeccCCCCCeEEEEEEeeeCCCCCe-EEEEEEeee
Confidence 69999999999999987665443322111 2356789999999999999999999998 999999999
Q ss_pred eeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCcccccc
Q 007929 394 KVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRA 472 (584)
Q Consensus 394 tLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~~ 472 (584)
+|++||.|+ |.+++++ ++|++||.++|++..+++++.|||||+|.|++++ ++| ||++.. ....+++
T Consensus 332 tL~~g~~v~----~~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~l~~ 398 (691)
T PRK12739 332 VLESGSYVL----NTTKGKK-----ERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT--TTGDTLCDEK--APIILES 398 (691)
T ss_pred EEcCCCEEE----eCCCCce-----EEecceEEEecCCcccccccCCCCEEEEeCCCcc--cCCCEEeCCC--CccccCC
Confidence 999999998 6655555 5899999999999999999999999999999986 788 998876 5567778
Q ss_pred cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcC
Q 007929 473 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 551 (584)
Q Consensus 473 ~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~ 551 (584)
+.+| +|+++++|+|.+++|++||.+||++|++|||+|.|+++ ||||++|+||||+|||++++||+++| +++|++++
T Consensus 399 ~~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f--~vev~~s~ 475 (691)
T PRK12739 399 MEFP-EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREF--KVEANVGA 475 (691)
T ss_pred CCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHh--CCeeEecC
Confidence 8887 89999999999999999999999999999999999995 89999999999999999999999999 99999999
Q ss_pred cEEeeEeeeeccccceeeecC----CCCCceeEEE
Q 007929 552 PVVSFRETVLEKSCRTVMSKS----PNKHNRRSCR 582 (584)
Q Consensus 552 p~V~yrETi~~~~~~~~~~~~----~n~~~~~~~~ 582 (584)
|+|+|||||+++++.....+. ..+++++++.
T Consensus 476 p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~ 510 (691)
T PRK12739 476 PQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIE 510 (691)
T ss_pred CEEEEeeccCCcccccceeccccCCCCceeEEEEE
Confidence 999999999988754333332 2345666654
No 8
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=1.3e-80 Score=702.19 Aligned_cols=471 Identities=30% Similarity=0.413 Sum_probs=400.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCcccccc--CCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~ 83 (584)
.+.++|+| +||+|+|||||+++||+.+|.+.+.+ .++++++|+.++|++||+|++++.+++.|+
T Consensus 8 ~~Irni~i---iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~----------- 73 (693)
T PRK00007 8 ERYRNIGI---MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----------- 73 (693)
T ss_pred cceeEEEE---ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-----------
Confidence 45679999 99999999999999999999876543 224789999999999999999999999998
Q ss_pred cCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCH
Q 007929 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (584)
Q Consensus 84 ~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~ 163 (584)
++++||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+++|+||||+..
T Consensus 74 -----~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~------- 141 (693)
T PRK00007 74 -----DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG------- 141 (693)
T ss_pred -----CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC-------
Confidence 89999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccC
Q 007929 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (584)
Q Consensus 164 ~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~ 243 (584)
+++.+++++++..+. . .+...++|+++.....+ .+|+..+.+++|++.
T Consensus 142 ----~~~~~~~~~i~~~l~--------~---~~~~~~ipisa~~~f~g--------------~~d~~~~~~~~~~~~--- 189 (693)
T PRK00007 142 ----ADFYRVVEQIKDRLG--------A---NPVPIQLPIGAEDDFKG--------------VVDLVKMKAIIWNEA--- 189 (693)
T ss_pred ----CCHHHHHHHHHHHhC--------C---CeeeEEecCccCCcceE--------------EEEcceeeeeecccC---
Confidence 345667777777762 1 11112566654322111 367778888888632
Q ss_pred cCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhccc--
Q 007929 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWLPA-- 320 (584)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~P~-- 320 (584)
..+.++... +++....+++.+++++|+|.+++.||++||+||++ ++++.+++. .+|.++++. .|+|+
T Consensus 190 ~~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~l~~~~l~---~~l~~~~~~~~~~Pv~~ 259 (693)
T PRK00007 190 DLGATFEYE-----EIPADLKDKAEEYREKLIEAAAEADEELMEKYLEG--EELTEEEIK---AALRKATIANEIVPVLC 259 (693)
T ss_pred CCCCcceEc-----cCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCc--CCCCHHHHH---HHHHHHHhcCcEEEEEe
Confidence 123334433 36777888999999999999999999999999997 899999988 777777664 89997
Q ss_pred --------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEe
Q 007929 321 --------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 392 (584)
Q Consensus 321 --------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~s 392 (584)
+++|||+|++++|+|.+++..+.. ..++......+.|++++|++|+|||+.++++.|+ ++|+||||
T Consensus 260 gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-ia~~RV~s 333 (693)
T PRK00007 260 GSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGI-----LPDGEEEEVERKASDDEPFSALAFKIMTDPFVGK-LTFFRVYS 333 (693)
T ss_pred cccccCcCHHHHHHHHHHHCCChhhccccccc-----CCCccccceeecCCCCCCeEEEEEEeeecCCCCc-EEEEEEee
Confidence 599999999999999876542210 0011123456789999999999999999999998 99999999
Q ss_pred eeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCccccc
Q 007929 393 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIR 471 (584)
Q Consensus 393 GtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~ 471 (584)
|+|++||.|+ |.+++++ ++|++||.++|++..++++|.|||||++.|++++ ++| ||++.+ ....++
T Consensus 334 Gtl~~g~~v~----~~~~~~~-----eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdtL~~~~--~~~~l~ 400 (693)
T PRK00007 334 GVLESGSYVL----NSTKGKK-----ERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT--TTGDTLCDEK--NPIILE 400 (693)
T ss_pred eEEcCCCEEE----eCCCCce-----eEeceeEEeccCCcccccccCCCcEEEEeCCccC--CcCCEeeCCC--CccccC
Confidence 9999999999 5555554 5999999999999999999999999999999986 788 998876 456677
Q ss_pred ccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEc
Q 007929 472 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 550 (584)
Q Consensus 472 ~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~ 550 (584)
++.+| +|+++++|+|.++.|++||.+||++|.+|||+|+|.++ +|||++|+||||+|||++++||+++| +|+++++
T Consensus 401 ~~~~~-~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~--~vev~~s 477 (693)
T PRK00007 401 SMEFP-EPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREF--KVEANVG 477 (693)
T ss_pred CCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHh--CCeeEec
Confidence 77776 89999999999999999999999999999999999996 89999999999999999999999999 9999999
Q ss_pred CcEEeeEeeeeccccc
Q 007929 551 DPVVSFRETVLEKSCR 566 (584)
Q Consensus 551 ~p~V~yrETi~~~~~~ 566 (584)
+|+|+|||||+++++.
T Consensus 478 ~p~V~yrETi~~~~~~ 493 (693)
T PRK00007 478 KPQVAYRETIRKKVEV 493 (693)
T ss_pred CCEEEEeecccCcccc
Confidence 9999999999988653
No 9
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-81 Score=662.50 Aligned_cols=528 Identities=40% Similarity=0.705 Sum_probs=467.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
...+||+ ++|+|||||||+++|+..+|.|+++-+|..+++|++++|+.||||++++.++...+
T Consensus 8 ~irn~~~---vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~-------------- 70 (887)
T KOG0467|consen 8 GIRNICL---VAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHK-------------- 70 (887)
T ss_pred ceeEEEE---EEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccC--------------
Confidence 4458999 99999999999999999999999999999999999999999999999999997666
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~ 166 (584)
+|.+|+||+|||.||.+++.+|.+.||+|+++||+++|+++||..+++|++..+..+++|+|||||.+.+++++|.++
T Consensus 71 --~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea 148 (887)
T KOG0467|consen 71 --DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEA 148 (887)
T ss_pred --ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCC-----------CCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHH
Q 007929 167 YQTFQKVIENANVIMATYEDPL-----------LGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMER 235 (584)
Q Consensus 167 ~~~~~~~l~~v~~~l~~~~~~~-----------~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~ 235 (584)
|.++-++++++|..++.|.... ...+.|.|.++|+.|.++.+||+|.+.+|++.|.+|.+.+...+...
T Consensus 149 ~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~ 228 (887)
T KOG0467|consen 149 YEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKF 228 (887)
T ss_pred HHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhh
Confidence 9999999999999998764221 01246889999999999999999999999999999999999999999
Q ss_pred hhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHH-HhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH
Q 007929 236 LWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINI-CMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM 314 (584)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~-v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~ 314 (584)
+||++|++++++.+.....-+ .-++.|.+++++++|.+++. +...|-+.++|....+|+.+.+.+++ .++.++|
T Consensus 229 lwgd~y~~~ktk~I~~~~~~~-grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~----~ll~~im 303 (887)
T KOG0467|consen 229 LWGDRYIDPKTKRICEGKKLK-GRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLR----NLLDAIM 303 (887)
T ss_pred hccceeecchhhhhhcccCcc-cCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHH----HHHHHHH
Confidence 999999999887654432112 23789999999999999995 56778899999999999999998885 7889999
Q ss_pred HhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCC---chhhcccccccCCCCCeEEEEEeeeecCCCC----ceeEE
Q 007929 315 QTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPL---DDAYANAIRNCDPEGPLMLYVSKMIPASDKG----RFFAF 387 (584)
Q Consensus 315 ~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g----~~l~~ 387 (584)
+.|+|..++.+-+++..+|+|.+.+..+...+...++ +-+...+++.|++++|.++||.|+++.+.+. ++++|
T Consensus 304 ~~wLPls~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ 383 (887)
T KOG0467|consen 304 STWLPLSDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAF 383 (887)
T ss_pred HhhcccccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheee
Confidence 9999999999999999999999998888766654321 1123456777999999999999999865542 25899
Q ss_pred EEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccceEeccCCCCCc
Q 007929 388 GRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDA 467 (584)
Q Consensus 388 ~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tgTl~~~~~~~~ 467 (584)
+||||||++.|+.||+.++ .+...+.+...+|.++|+++|++.++.+++++|+++++.| ...+.+++|||+.. ..
T Consensus 384 ari~sgTlr~g~~v~v~~p--d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~~--~~ 458 (887)
T KOG0467|consen 384 ARIFSGTLRVGQVVYVLGP--DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSKV--PC 458 (887)
T ss_pred eeeccCceeeccEeeecCC--CCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecc-cceEeccceecccC--CC
Confidence 9999999999999999987 3333444555789999999999999999999999999999 77777888999975 33
Q ss_pred ccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEecChhhHHHHHHHHHHhhCCCceE
Q 007929 468 HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEI 547 (584)
Q Consensus 468 ~~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLe~~l~rL~~~f~~~v~v 547 (584)
.++....|..+|+++++|+|.++.+.++|.++|+.|...||++.+..+++||+++.+.||+|||.|+.+|++ |+ ++++
T Consensus 459 ~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-fa-~i~i 536 (887)
T KOG0467|consen 459 GPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-FA-KIEI 536 (887)
T ss_pred cceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-hh-ceEE
Confidence 444445566689999999999999999999999999999999999999999999999999999999999999 98 9999
Q ss_pred EEcCcEEeeEeeeecccc
Q 007929 548 IKSDPVVSFRETVLEKSC 565 (584)
Q Consensus 548 ~~~~p~V~yrETi~~~~~ 565 (584)
++|+|.||||||+.+.+.
T Consensus 537 ~vSeP~vpfrET~~e~s~ 554 (887)
T KOG0467|consen 537 SVSEPLVPFRETIIEDSD 554 (887)
T ss_pred EecCCccchhhhccccch
Confidence 999999999999966554
No 10
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.8e-79 Score=696.81 Aligned_cols=471 Identities=42% Similarity=0.679 Sum_probs=402.5
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+..+|+| +||+|||||||+++||+.+|.+.+...|.++++|+.++|++||+|++++.+++.|..
T Consensus 18 ~~iRni~i---igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~------------ 82 (731)
T PRK07560 18 EQIRNIGI---IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY------------ 82 (731)
T ss_pred hcccEEEE---EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe------------
Confidence 35668999 999999999999999999999998877778899999999999999999999998841
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 165 (584)
++.++.|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+...+++.++++
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~ 162 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQE 162 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHH
Confidence 12378999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC-CcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 166 AYQTFQKVIENANVIMATYEDPLL-GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~~~~~~~~-~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
++.++.+++++++..+..|....+ +.+.+.|.++++.|+|+.++|+|+++.+...+
T Consensus 163 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~----------------------- 219 (731)
T PRK07560 163 MQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTG----------------------- 219 (731)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhC-----------------------
Confidence 999999999999999887653321 23456788888999999999998775443210
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHH
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~L 324 (584)
++. +++++.|.++ +.+++ .+|+|+.+.|
T Consensus 220 ----------------------------------~~~-~~l~e~~~~~-----~~~~l------------~~~~Pv~~~L 247 (731)
T PRK07560 220 ----------------------------------IKF-KDIIDYYEKG-----KQKEL------------AEKAPLHEVV 247 (731)
T ss_pred ----------------------------------CCH-HHHHHHHhcC-----CHHHH------------HhhccchhHH
Confidence 011 2344555322 12222 2569999999
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEc
Q 007929 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (584)
Q Consensus 325 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~ 404 (584)
||+|++++|||.+++.++...++.+...++..+..+.|++++|++|+|||+..+++.|+ ++|+|||||+|++||.|++.
T Consensus 248 ld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~-va~~RV~sGtL~~Gd~v~~~ 326 (731)
T PRK07560 248 LDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGE-VATGRVFSGTLRKGQEVYLV 326 (731)
T ss_pred HHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCe-EEEEEEEEeEEcCCCEEEEc
Confidence 99999999999988777776666553333333456789999999999999999999888 99999999999999999955
Q ss_pred CCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCcccccccccCCCceEEE
Q 007929 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 483 (584)
Q Consensus 405 ~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ 483 (584)
+ .+.+ ++|++|+.++|++..++++|.|||||++.|++++ .+| ||++.. ...+++++.+.++|++++
T Consensus 327 ~----~~~~-----~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~--~~GdtL~~~~--~~~~~~~~~~~p~Pv~~~ 393 (731)
T PRK07560 327 G----AKKK-----NRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDA--RAGETVVSVE--DMTPFESLKHISEPVVTV 393 (731)
T ss_pred C----CCCc-----eEeheehhhhcCCCceeeeECCCCEEEEEccccc--ccCCEEeCCC--ccccccccccCCCCeEEE
Confidence 4 3334 5899999999999999999999999999999886 578 998876 456677764334899999
Q ss_pred EEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeEeeeec
Q 007929 484 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE 562 (584)
Q Consensus 484 aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yrETi~~ 562 (584)
+|+|.+++|++||.+||++|++|||+|+|+++ +|||++|+||||+|||++++||+++| +|+|++++|+|+|||||.+
T Consensus 394 aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~--~vev~~~~p~V~yrETI~~ 471 (731)
T PRK07560 394 AIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDY--GIEVVTSEPIVVYRETVRG 471 (731)
T ss_pred EEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHh--CCceEecCCEEEEEEeccc
Confidence 99999999999999999999999999999996 89999999999999999999999999 9999999999999999998
Q ss_pred cccceeeecCCCCCceeEEEe
Q 007929 563 KSCRTVMSKSPNKHNRRSCRG 583 (584)
Q Consensus 563 ~~~~~~~~~~~n~~~~~~~~~ 583 (584)
++. .+..++||+|++++|.+
T Consensus 472 ~~~-~~~~~~~~~~~~v~l~i 491 (731)
T PRK07560 472 KSQ-VVEGKSPNKHNRFYISV 491 (731)
T ss_pred Ccc-ceEEECCCCceEEEEEE
Confidence 874 23456899999999875
No 11
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=8.7e-78 Score=680.27 Aligned_cols=483 Identities=27% Similarity=0.381 Sum_probs=399.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
+..+|+| +||+|+|||||+++|++.+|.+.+.+. .+++++|+.++|++||+|+++...++.|+
T Consensus 9 ~irni~i---iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~------------ 73 (689)
T TIGR00484 9 RFRNIGI---SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK------------ 73 (689)
T ss_pred cccEEEE---ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC------------
Confidence 4569999 999999999999999999998865432 24689999999999999999999999998
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHH
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~ 164 (584)
+++++|||||||.+|..++..+++.+|++|+|||+.+|++.+++.+|+++.+.++|+++|+||||+..
T Consensus 74 ----~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~-------- 141 (689)
T TIGR00484 74 ----GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG-------- 141 (689)
T ss_pred ----CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC--------
Confidence 89999999999999999999999999999999999999999999999998889999999999999984
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
.++.+.+++++..++ ..+...++|++... ++. ..+|+..+..++| +.
T Consensus 142 ---~~~~~~~~~i~~~l~-----------~~~~~~~ipis~~~-~~~-------------~~id~~~~~~~~~-----~~ 188 (689)
T TIGR00484 142 ---ANFLRVVNQIKQRLG-----------ANAVPIQLPIGAED-NFI-------------GVIDLVEMKAYFF-----NG 188 (689)
T ss_pred ---CCHHHHHHHHHHHhC-----------CCceeEEeccccCC-Cce-------------EEEECccceEEec-----cc
Confidence 345667777777762 11222367765432 221 1245555544433 22
Q ss_pred C-CCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhccc--
Q 007929 245 A-TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWLPA-- 320 (584)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~P~-- 320 (584)
. ...+... .+++++.+++.+++++|+|++++.||++||+||++ .+++.+++. ++|.++++. +++|+
T Consensus 189 ~~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~~~~~~l~---~~l~~~~~~~~~~PV~~ 258 (689)
T TIGR00484 189 DKGTKAIEK-----EIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEG--EELTIEEIK---NAIRKGVLNCEFFPVLC 258 (689)
T ss_pred CCCceeeec-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHhcCCEEEEEe
Confidence 1 1223222 37888999999999999999999999999999997 889999887 677777664 78886
Q ss_pred --------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEe
Q 007929 321 --------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 392 (584)
Q Consensus 321 --------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~s 392 (584)
++.|||+|++++|+|.+++..+.... +......+.|++++||+|+|||+..+++.|+ ++|+||||
T Consensus 259 gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~------~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-i~~~RV~s 331 (689)
T TIGR00484 259 GSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDP------DTEKEIERKASDDEPFSALAFKVATDPFVGQ-LTFVRVYS 331 (689)
T ss_pred ccccCCccHHHHHHHHHHHCCCchhcccccccCC------CCCceeeecCCCCCceEEEEEEeeecCCCCe-EEEEEEEE
Confidence 59999999999999986543221110 1112345788999999999999999999887 99999999
Q ss_pred eeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCccccc
Q 007929 393 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIR 471 (584)
Q Consensus 393 GtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~ 471 (584)
|+|++||.|+ |.+.+++ +++++|+.++|++..+++++.|||||+|.|++++ .+| ||++.. ....++
T Consensus 332 GtL~~g~~v~----~~~~~~~-----~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~~~ 398 (689)
T TIGR00484 332 GVLKSGSYVK----NSRKNKK-----ERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT--TTGDTLCDPK--IDVILE 398 (689)
T ss_pred eEEcCCCEEE----eCCCCce-----EEecceEEeecCCcccccccCCCCEEEEcCCCCC--CCCCEEeCCC--CccccC
Confidence 9999999999 6555555 5899999999999999999999999999999986 677 998876 556677
Q ss_pred ccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEc
Q 007929 472 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 550 (584)
Q Consensus 472 ~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~ 550 (584)
++.+| +|+++++|+|.++.|++||.+||++|.+|||+|+|+.+ ||||++|+||||+|||++++||+++| +++++++
T Consensus 399 ~~~~~-~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~--~vev~~~ 475 (689)
T TIGR00484 399 RMEFP-EPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREF--KVEANVG 475 (689)
T ss_pred CCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHh--CCeeEec
Confidence 77776 89999999999999999999999999999999999996 89999999999999999999999999 9999999
Q ss_pred CcEEeeEeeeeccccceeeecC----CCCCceeEEE
Q 007929 551 DPVVSFRETVLEKSCRTVMSKS----PNKHNRRSCR 582 (584)
Q Consensus 551 ~p~V~yrETi~~~~~~~~~~~~----~n~~~~~~~~ 582 (584)
+|+|+|||||+++++.....+. ..+++++++.
T Consensus 476 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~ 511 (689)
T TIGR00484 476 APQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIR 511 (689)
T ss_pred CCEEEEeecccCccccccccccccCCCCceEEEEEE
Confidence 9999999999988764222221 1235666664
No 12
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=2.1e-75 Score=662.36 Aligned_cols=468 Identities=29% Similarity=0.400 Sum_probs=395.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
...+|+| +||.|+|||||+++|++.+|.+.+.+. .+++++|+.++|++|++|+.++..++.|.
T Consensus 7 ~irni~i---iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~------------ 71 (687)
T PRK13351 7 QIRNIGI---LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD------------ 71 (687)
T ss_pred cccEEEE---ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC------------
Confidence 4579999 999999999999999999998876542 23688999999999999999999999998
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHH
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~ 164 (584)
++++++||||||.+|..++..+++.+|++++|+|+.+|++.++..+|+++...++|+++|+||+|+..
T Consensus 72 ----~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~-------- 139 (687)
T PRK13351 72 ----NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVG-------- 139 (687)
T ss_pred ----CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCC--------
Confidence 89999999999999999999999999999999999999999999999998888999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
.++.+++++++..+. . .+...++|+..+....+ .+|+..+.++.|+.. .
T Consensus 140 ---~~~~~~~~~i~~~l~--------~---~~~~~~~P~~~~~~~~g--------------~id~~~~~~~~~~~~---~ 188 (687)
T PRK13351 140 ---ADLFKVLEDIEERFG--------K---RPLPLQLPIGSEDGFEG--------------VVDLITEPELHFSEG---D 188 (687)
T ss_pred ---CCHHHHHHHHHHHHC--------C---CeEEEEeccccCCceEE--------------EEECccceEEecccC---C
Confidence 567888888888873 1 11222556554332111 256666666667532 1
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-Hhhccc---
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA--- 320 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~-~~~~P~--- 320 (584)
.+..+... +++..|.+++++++++|+|.+++.||++||+||++ .+++.+++. .++++.+. ++|+|+
T Consensus 189 ~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~--~~l~~~~l~---~~~~~~~~~~~~~PV~~g 258 (687)
T PRK13351 189 GGSTVEEG-----PIPEELLEEVEEAREKLIEALAEFDDELLELYLEG--EELSAEQLR---APLREGTRSGHLVPVLFG 258 (687)
T ss_pred CCCceEEc-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEec
Confidence 22334333 36789999999999999999999999999999997 899999987 56666655 489997
Q ss_pred -------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEee
Q 007929 321 -------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSG 393 (584)
Q Consensus 321 -------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sG 393 (584)
++.|||+|++++|+|.+++..+... + +. ....+.|++++|++++|||++.+++.|+ ++|+|||||
T Consensus 259 SA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~---~--~~--~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sG 330 (687)
T PRK13351 259 SALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK---D--NG--KPVKVDPDPEKPLLALVFKVQYDPYAGK-LTYLRVYSG 330 (687)
T ss_pred ccCcCccHHHHHHHHHHHCCChhhcccccccC---C--CC--CceeecCCCCCCeEEEEEEeeecCCCce-EEEEEEeEE
Confidence 5899999999999998765443321 0 00 0123678999999999999999999898 999999999
Q ss_pred eeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCcccccc
Q 007929 394 KVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRA 472 (584)
Q Consensus 394 tLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~~ 472 (584)
+|++||.|++.+ ++.+ +++++||.++|.+..++++|.||||+++.|++++ .+| ||++.. ....+++
T Consensus 331 tl~~g~~v~~~~----~~~~-----~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~~~~ 397 (687)
T PRK13351 331 TLRAGSQLYNGT----GGKR-----EKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL--ETGDTLHDSA--DPVLLEL 397 (687)
T ss_pred EEcCCCEEEeCC----CCCc-----eEeeeEEEEccCCeeECCccCCCCEEEEECcccC--ccCCEEeCCC--CccccCC
Confidence 999999999653 3334 5899999999999999999999999999999987 677 998876 4556666
Q ss_pred cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcC
Q 007929 473 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 551 (584)
Q Consensus 473 ~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~ 551 (584)
+.+| +|+++++|+|.+++|.+||.+||++|.+|||+|.|+++ ||||++|+||||+|||++++||+++| ++++++++
T Consensus 398 ~~~~-~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~--~vev~~~~ 474 (687)
T PRK13351 398 LTFP-EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREF--KLEVNTGK 474 (687)
T ss_pred CCCC-CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CCceEecC
Confidence 6666 89999999999999999999999999999999999996 89999999999999999999999999 99999999
Q ss_pred cEEeeEeeeeccccc
Q 007929 552 PVVSFRETVLEKSCR 566 (584)
Q Consensus 552 p~V~yrETi~~~~~~ 566 (584)
|+|+|||||++.++.
T Consensus 475 p~V~y~Eti~~~~~~ 489 (687)
T PRK13351 475 PQVAYRETIRKMAEG 489 (687)
T ss_pred CeEEEEeeccccccc
Confidence 999999999987653
No 13
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=8.4e-76 Score=664.99 Aligned_cols=471 Identities=40% Similarity=0.654 Sum_probs=393.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
....+|+| +||.|||||||+++|++.+|.+.+...|.++++|+.++|++||+|+.++.+++.|..
T Consensus 17 ~~irnI~i---vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~------------ 81 (720)
T TIGR00490 17 KFIRNIGI---VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY------------ 81 (720)
T ss_pred ccccEEEE---EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee------------
Confidence 35679999 999999999999999999999988777777889999999999999999887754431
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 165 (584)
.++++++||||||||.+|..++..+++.+|+||+|+|+.+|++.+|+.+|+++.+.++|+++|+||||+...+++..+++
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~ 161 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQE 161 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHH
Confidence 23389999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC-CcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 166 AYQTFQKVIENANVIMATYEDPLL-GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~~~~~~~~-~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
++.+|.+++..++..+..+..... +.+.+.|..+++.|+|+..+|+|++++|.+..
T Consensus 162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~----------------------- 218 (720)
T TIGR00490 162 LQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTG----------------------- 218 (720)
T ss_pred HHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcC-----------------------
Confidence 999999999999988854322111 22345677788899999999998876653210
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHH
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~L 324 (584)
+ +.+.|.+++.. .. .+++ .+|+|++++|
T Consensus 219 --------------~----------------------~~~~l~~~~~~--~~--~~~~------------~~~~Pv~~~L 246 (720)
T TIGR00490 219 --------------I----------------------GFKDIYKYCKE--DK--QKEL------------AKKSPLHQVV 246 (720)
T ss_pred --------------C----------------------CHHHHHHHHHh--cc--HHHH------------hhhhhHHHHH
Confidence 0 00113444433 11 1111 2589999999
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEc
Q 007929 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (584)
Q Consensus 325 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~ 404 (584)
||+|++++|||.+++.++...++.+..+++.....+.|++++|++++|||+..+++.|+ ++|+|||||+|++||.|++.
T Consensus 247 ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~-ia~~RV~sGtL~~G~~l~~~ 325 (720)
T TIGR00490 247 LDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGE-VAVGRLYSGTIRPGMEVYIV 325 (720)
T ss_pred HHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcE-EEEEEEEeCEEcCCCEEEEc
Confidence 99999999999987766666555443222333467889999999999999999999898 99999999999999999965
Q ss_pred CCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCc-ccccccccCCCceEE
Q 007929 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDA-HPIRAMKFSVSPVVR 482 (584)
Q Consensus 405 ~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~-~~~~~~~~~~~Pv~~ 482 (584)
+. +.+ ++|++|+.++|.+..++++|.|||||++.|++++ .+| ||++.. .. .+++++.+.++|+++
T Consensus 326 ~~----~~~-----~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~--~~GdtL~~~~--~~~~~~~~~~~~~~Pv~~ 392 (720)
T TIGR00490 326 DR----KAK-----ARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDA--VAGETICTTV--ENITPFESIKHISEPVVT 392 (720)
T ss_pred CC----CCe-----eEeeEEEEeccCCccCccEECCCCEEEEECcccc--ccCceeecCC--cccccCcccccCCCceEE
Confidence 43 334 5899999999999999999999999999999986 567 998765 33 345655433489999
Q ss_pred EEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeEeeee
Q 007929 483 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL 561 (584)
Q Consensus 483 ~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yrETi~ 561 (584)
++|+|++++|++||.+||++|++|||+|.++++ ||||++|+||||+|||++++||+++| +|++++++|+|+|||||.
T Consensus 393 ~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~--~vev~~~~P~V~YrETi~ 470 (720)
T TIGR00490 393 VAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDY--GLDVETSPPIVVYRETVT 470 (720)
T ss_pred EEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHh--CCceeecCCEEEEEEecc
Confidence 999999999999999999999999999999995 89999999999999999999999999 999999999999999999
Q ss_pred ccccceeeecCCCCCceeEEEe
Q 007929 562 EKSCRTVMSKSPNKHNRRSCRG 583 (584)
Q Consensus 562 ~~~~~~~~~~~~n~~~~~~~~~ 583 (584)
+.++. ...+.+++|+++++++
T Consensus 471 ~~~~~-~~~~~~~~~~~v~l~i 491 (720)
T TIGR00490 471 GTSPV-VEGKSPNKHNRFYIVV 491 (720)
T ss_pred ccccc-eEEEcCCCcEEEEEEE
Confidence 98762 2345689999999975
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=6.5e-71 Score=624.85 Aligned_cols=457 Identities=31% Similarity=0.444 Sum_probs=381.8
Q ss_pred ccCCCCChhHHHHHHHHHcCcccccc--CCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCceeEEE
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINL 94 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inl 94 (584)
+||+|||||||+++|++.+|.+.+.+ .++.+++|+.+.|++||+|+.++..++.|. ++.+++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----------------~~~i~l 64 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK----------------GHKINL 64 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC----------------CEEEEE
Confidence 59999999999999999999987754 224689999999999999999999999998 899999
Q ss_pred eCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHHHHHHHHHH
Q 007929 95 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 174 (584)
Q Consensus 95 iDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~~~~~~~~l 174 (584)
||||||.+|..++..+++.+|++++|+|++.|++.++..+|+.+...++|+++|+||+|+.. .++.+++
T Consensus 65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-----------~~~~~~~ 133 (668)
T PRK12740 65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG-----------ADFFRVL 133 (668)
T ss_pred EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC-----------CCHHHHH
Confidence 99999999999999999999999999999999999999999998888999999999999984 3456677
Q ss_pred HHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCCCeeeecCC
Q 007929 175 ENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKWTSRNT 254 (584)
Q Consensus 175 ~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (584)
++++..+. . ...|. ++|+..+....++ +|+.....+ +|+ .++.+...
T Consensus 134 ~~l~~~l~--------~-~~~~~--~~p~~~~~~~~~~--------------id~~~~~~~-----~~~-~~~~~~~~-- 180 (668)
T PRK12740 134 AQLQEKLG--------A-PVVPL--QLPIGEGDDFTGV--------------VDLLSMKAY-----RYD-EGGPSEEI-- 180 (668)
T ss_pred HHHHHHHC--------C-CceeE--EecccCCCCceEE--------------EECccceEE-----Eec-CCCeeEEe--
Confidence 77777762 1 11121 4454433322221 333333322 233 23334333
Q ss_pred CCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-Hhhccc----------hHH
Q 007929 255 GSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA----------SSA 323 (584)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~-~~~~P~----------~~~ 323 (584)
..+..+.+++.+++++|+|++++.||++||+||++ ++++.+++. ..+.+.+. +.|+|+ ++.
T Consensus 181 ---~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~--~~l~~~~~~---~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~ 252 (668)
T PRK12740 181 ---EIPAELLDRAEEAREELLEALAEFDDELMEKYLEG--EELSEEEIK---AGLRKATLAGEIVPVFCGSALKNKGVQR 252 (668)
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHcCCEEEEEeccccCCccHHH
Confidence 25778889999999999999999999999999998 899999887 55555544 489998 899
Q ss_pred HHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEE
Q 007929 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (584)
Q Consensus 324 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v 403 (584)
|||+|++++|+|.+++.+. +. ......+..|++++|++++|||++++++.|+ ++|+|||||+|++||.|++
T Consensus 253 LLd~i~~~lPsp~~~~~~~------~~--~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~-i~~~RV~sG~L~~g~~v~~ 323 (668)
T PRK12740 253 LLDAVVDYLPSPLEVPPVD------GE--DGEEGAELAPDPDGPLVALVFKTMDDPFVGK-LSLVRVYSGTLKKGDTLYN 323 (668)
T ss_pred HHHHHHHHCCChhhccccc------CC--CCccccccccCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEEEe
Confidence 9999999999998654321 10 0111245678999999999999999999898 9999999999999999996
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCcccccccccCCCceEE
Q 007929 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 482 (584)
Q Consensus 404 ~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~ 482 (584)
.+ ++++ +++++|+.++|++.+++++|.|||||++.|++.+ .+| ||++.. ....++++.++ +|+++
T Consensus 324 ~~----~~~~-----~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~--~~~~~~~~~~~-~P~~~ 389 (668)
T PRK12740 324 SG----TGKK-----ERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA--ATGDTLCDKG--DPILLEPMEFP-EPVIS 389 (668)
T ss_pred CC----CCCc-----EEecceeeecCCCccccCccCCCCEEEEeccCcc--CCCCEEeCCC--CccccCCCCCC-CcceE
Confidence 53 2333 6899999999999999999999999999999875 677 998765 45677777777 89999
Q ss_pred EEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeEeeee
Q 007929 483 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL 561 (584)
Q Consensus 483 ~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yrETi~ 561 (584)
++|+|.+++|.++|.+||++|+++||+|.|..+ +|||++|+||||+|||++++||+++| ++++.+++|+|+|||||.
T Consensus 390 ~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~--~~~v~~~~p~V~yrEti~ 467 (668)
T PRK12740 390 LAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREY--GVEVETGPPQVPYRETIR 467 (668)
T ss_pred EEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CceeEecCCeeEEeeccC
Confidence 999999999999999999999999999999996 89999999999999999999999999 999999999999999999
Q ss_pred ccccc
Q 007929 562 EKSCR 566 (584)
Q Consensus 562 ~~~~~ 566 (584)
++++.
T Consensus 468 ~~~~~ 472 (668)
T PRK12740 468 KKAEG 472 (668)
T ss_pred CCccc
Confidence 87653
No 15
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=3.3e-70 Score=594.87 Aligned_cols=436 Identities=22% Similarity=0.295 Sum_probs=359.4
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccC------CCeeeeCChhhHhhhccceecceEEEEeecchhhhh
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA------GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~------g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~ 79 (584)
.+..+|+| +||+|||||||+++|++.+|.+.+.+. +..+++|+.+.|++||+|+.++..++.|+
T Consensus 8 ~~~Rni~I---iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~------- 77 (526)
T PRK00741 8 AKRRTFAI---ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR------- 77 (526)
T ss_pred hcCCEEEE---ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC-------
Confidence 35569999 999999999999999999999876642 23356899999999999999999999998
Q ss_pred cccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccc
Q 007929 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 159 (584)
Q Consensus 80 ~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~ 159 (584)
++++|+||||||.||..++.++++.+|+||+|||+++|++.+|+++|+.+...++|+++|+||||+..
T Consensus 78 ---------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~--- 145 (526)
T PRK00741 78 ---------DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG--- 145 (526)
T ss_pred ---------CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc---
Confidence 89999999999999999999999999999999999999999999999998889999999999999984
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcC
Q 007929 160 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 239 (584)
Q Consensus 160 ~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~ 239 (584)
+++.+++++++..++ ....| .++|++.+....| .+|+...+++.|.+
T Consensus 146 --------a~~~~~l~~i~~~l~---------~~~~p--~~~Pig~~~~f~G--------------vvdl~~~~~~~~~~ 192 (526)
T PRK00741 146 --------REPLELLDEIEEVLG---------IACAP--ITWPIGMGKRFKG--------------VYDLYNDEVELYQP 192 (526)
T ss_pred --------cCHHHHHHHHHHHhC---------CCCee--EEeccccCCceeE--------------EEEeecceeeeccc
Confidence 456677788877772 13345 4888887764333 25666666655521
Q ss_pred cccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHh--------HHHHHH
Q 007929 240 NFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELM--------GKALMK 311 (584)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~--------~~~l~~ 311 (584)
. .++ . .++.+.+++.||++||+||++ ..+ +|+... .....+
T Consensus 193 ~----~~~--------~---------------~~~~e~~~~~dd~lle~~l~~--~~~--~~l~~~lel~~~~~~~~~~~ 241 (526)
T PRK00741 193 G----EGH--------T---------------IQEVEIIKGLDNPELDELLGE--DLA--EQLREELELVQGASNEFDLE 241 (526)
T ss_pred C----CCC--------c---------------ceeeeeccCCCHHHHHHHhcc--cHH--HHHHHHHHhhhhcccchhHH
Confidence 0 000 0 023457888999999999987 533 333210 011244
Q ss_pred HHH-Hhhccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeee---
Q 007929 312 RVM-QTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIP--- 377 (584)
Q Consensus 312 ~v~-~~~~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~--- 377 (584)
++. ++++|+ ++.|||+|++++|+|.+..... ....+ .++||+|+|||+.+
T Consensus 242 ~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~---------------~~~~~-~~~~~~~~VFK~~~~m~ 305 (526)
T PRK00741 242 AFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDE---------------REVEP-TEEKFSGFVFKIQANMD 305 (526)
T ss_pred HHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccc---------------eeecC-CCCceEEEEEEEEecCC
Confidence 444 378887 7999999999999997542110 01111 34679999999984
Q ss_pred cCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce
Q 007929 378 ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA 457 (584)
Q Consensus 378 ~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg 457 (584)
+++.|+ ++|+|||||+|++|+.|+ |.+++++ +|+++++.++|.++.+|++|.|||||++.|++++ ++|
T Consensus 306 ~~~~gr-lafvRV~sG~l~~g~~v~----~~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~--~~G 373 (526)
T PRK00741 306 PKHRDR-IAFVRVCSGKFEKGMKVR----HVRTGKD-----VRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI--QIG 373 (526)
T ss_pred CCcCce-EEEEEEeccEECCCCEEE----eccCCce-----EEecceEEEecCCceECceeCCCCEEEEECCCCC--ccC
Confidence 558888 999999999999999999 7777766 6999999999999999999999999999999996 899
Q ss_pred -EeccCCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHH
Q 007929 458 -TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLK 535 (584)
Q Consensus 458 -Tl~~~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~ 535 (584)
||++.+ +..++++++| +|+++++|+|++++|++||.+||++|++||| +.+.++ +|||++|+||||+|||++++
T Consensus 374 DTL~~~~---~~~~~~i~~~-~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~ 448 (526)
T PRK00741 374 DTFTQGE---KLKFTGIPNF-APELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAH 448 (526)
T ss_pred CCccCCC---ccccCCCCCC-CccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHH
Confidence 998854 5667788887 8999999999999999999999999999995 999995 89999999999999999999
Q ss_pred HHHHhhCCCceEEEcCcEEeeEeeeec
Q 007929 536 DLQDDFMGGAEIIKSDPVVSFRETVLE 562 (584)
Q Consensus 536 rL~~~f~~~v~v~~~~p~V~yrETi~~ 562 (584)
||+++| ||++.+++|+|++-.-|..
T Consensus 449 RL~~ey--~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 449 RLKNEY--NVEAIYEPVGVATARWVEC 473 (526)
T ss_pred HHHHHh--CCEEEEecCCccEEEEEeC
Confidence 999999 9999999999999998864
No 16
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-70 Score=542.41 Aligned_cols=465 Identities=24% Similarity=0.325 Sum_probs=385.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCC--CeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAG--DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g--~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
...+|.| ++|.++||||.++++||.+|.+...+.. +.+++|+...|++||||++++.+.|.|+
T Consensus 36 kirnigi---iahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk------------ 100 (753)
T KOG0464|consen 36 KIRNIGI---IAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK------------ 100 (753)
T ss_pred hhhccee---EEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc------------
Confidence 3457877 9999999999999999999998876532 4799999999999999999999999999
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHH
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~ 164 (584)
+|++|+||||||+||.-|+++.+|+.||++.|+|++.|+++||..+|+|+.+.++|.++|+||||+..
T Consensus 101 ----g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~-------- 168 (753)
T KOG0464|consen 101 ----GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLA-------- 168 (753)
T ss_pred ----cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhh--------
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
++|+..++.+++.|+ ..|.+.++|++.+.. |. |+.+|+..-.+.+|+.+.-
T Consensus 169 ---anfe~avdsi~ekl~-----------ak~l~l~lpi~eak~--------fn-----kg~ldil~ke~l~~ncnsn-- 219 (753)
T KOG0464|consen 169 ---ANFENAVDSIEEKLG-----------AKALKLQLPIGEAKG--------FN-----KGFLDILHKEKLLGNCNSN-- 219 (753)
T ss_pred ---hhhhhHHHHHHHHhC-----------CceEEEEeccccccc--------cc-----chHHHHHHHhhccCCCCCC--
Confidence 899999999999982 245556888888753 11 2235666555666754321
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCC---CCHHHHHHhHHHHHHHHH-Hhhccc
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVT---MKSEEKELMGKALMKRVM-QTWLPA 320 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~---l~~~e~~~~~~~l~~~v~-~~~~P~ 320 (584)
+++.|...|--. .-.+++.+...+.+.+|++.+++.|++...+||+++.+. ++.++++ .++.+-.+ ++..|+
T Consensus 220 dgkd~e~~plle-~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elk---sai~~lt~aq~a~~i 295 (753)
T KOG0464|consen 220 DGKDFENKPLLE-KNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELK---SAIHELTCAQKAAPI 295 (753)
T ss_pred ccccccCCcccc-cCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHH---HHHHHHhhhhhhcce
Confidence 234455443110 113455667778899999999999999999999987554 5666666 55655543 567775
Q ss_pred ----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEe
Q 007929 321 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 390 (584)
Q Consensus 321 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV 390 (584)
++.|||++.-|+|||.+++. .+---| .+.++|+.||+.+|...|. ++|.||
T Consensus 296 ~cgsaiknkgiqplldavtmylpspeerny-eflqwy-----------------kddlcalafkvlhdkqrg~-l~fmri 356 (753)
T KOG0464|consen 296 LCGSAIKNKGIQPLLDAVTMYLPSPEERNY-EFLQWY-----------------KDDLCALAFKVLHDKQRGP-LSFMRI 356 (753)
T ss_pred ehhhhhcccCccchhhhhhhccCChhhcch-HHHhhh-----------------hhhHHHHhhhhhcccccCc-eeEEEE
Confidence 79999999999999988642 222112 2447899999999999999 999999
Q ss_pred EeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCC----
Q 007929 391 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV---- 465 (584)
Q Consensus 391 ~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~---- 465 (584)
|||+|+.+..++ |.+.... +++.+|+++.+.+..+|+++.||+|..++||+.. .|| |+...+..
T Consensus 357 ysgsi~~~~ai~----nin~~~s-----e~~~kl~~pfade~~~i~qlsagnialt~glk~t--atgdtivaskasa~aa 425 (753)
T KOG0464|consen 357 YSGSIHNNLAIF----NINGMCS-----EGILKLFLPFADEHREIEQLSAGNIALTAGLKHT--ATGDTIVASKASAEAA 425 (753)
T ss_pred ecccccCceeee----ecccccc-----cchHhhhccchhhhhhhhhcccccEEEEecceee--ccCCeEEecchhHHHH
Confidence 999999999999 5443344 5899999999999999999999999999999986 677 77543310
Q ss_pred ------------------CcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecC
Q 007929 466 ------------------DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAG 526 (584)
Q Consensus 466 ------------------~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~G 526 (584)
....+..+..| .|+|.+.|||.+..+.+.+..||.-|..||||++++.+ +|||+++.|||
T Consensus 426 ~qk~~~egekk~~q~~daerll~agie~p-d~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~g 504 (753)
T KOG0464|consen 426 AQKAAGEGEKKHLQNKDAERLLFAGIEIP-DAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMG 504 (753)
T ss_pred HHHhhccchhhccCCccccceeeecccCC-CceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccc
Confidence 11224556666 99999999999999999999999999999999999997 99999999999
Q ss_pred hhhHHHHHHHHHHhhCCCceEEEcCcEEeeEeeeeccc
Q 007929 527 ELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS 564 (584)
Q Consensus 527 elHLe~~l~rL~~~f~~~v~v~~~~p~V~yrETi~~~~ 564 (584)
|||+|.+-+|+++.| |+++-+++.+|+|||||.+..
T Consensus 505 elhie~ihdrikrey--~ldtfig~lqvayre~i~~~l 540 (753)
T KOG0464|consen 505 ELHIEAIHDRIKREY--GLDTFIGKLQVAYREMILEEL 540 (753)
T ss_pred hhhHHHHHHHHHhhc--CchheehhHHHHHHHHHHHHh
Confidence 999999999999999 999999999999999997643
No 17
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=6.3e-67 Score=569.30 Aligned_cols=438 Identities=19% Similarity=0.261 Sum_probs=339.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccC----C--CeeeeCChhhHhhhccceecceEEEEeecchhhhh
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA----G--DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~----g--~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~ 79 (584)
.+..+|+| +||+|||||||+++||+.+|.+.+.+. | ..+++|+.++|++||+|+.++..++.|+
T Consensus 9 ~~~Rniai---iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~------- 78 (527)
T TIGR00503 9 DKRRTFAI---ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR------- 78 (527)
T ss_pred ccCCEEEE---EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC-------
Confidence 45679999 999999999999999999999876542 1 2478999999999999999999999998
Q ss_pred cccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccc
Q 007929 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 159 (584)
Q Consensus 80 ~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~ 159 (584)
++++||||||||.+|..++.++++.+|+||+|||+..|+..+++.+|+.+...++|+++|+||+|+..
T Consensus 79 ---------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~--- 146 (527)
T TIGR00503 79 ---------DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI--- 146 (527)
T ss_pred ---------CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC---
Confidence 89999999999999999999999999999999999999999999999998888999999999999974
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcC
Q 007929 160 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 239 (584)
Q Consensus 160 ~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~ 239 (584)
.++.+++++++..++ . ...| .++|++.+....+ .+|+.....++|.+
T Consensus 147 --------~~~~~ll~~i~~~l~--------~-~~~~--~~~PIg~~~~f~g--------------v~d~l~~~~~~y~~ 193 (527)
T TIGR00503 147 --------RDPLELLDEVENELK--------I-NCAP--ITWPIGCGKLFKG--------------VYHLLKDETYLYQS 193 (527)
T ss_pred --------CCHHHHHHHHHHHhC--------C-CCcc--EEEEecCCCceeE--------------EEEcccCcceecCc
Confidence 355667777777762 1 1223 3777766542211 24555555555521
Q ss_pred cccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHH------HHhcCCCCCHHHHHHhHHHHHHHH
Q 007929 240 NFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPM------LQKLGVTMKSEEKELMGKALMKRV 313 (584)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~------l~~~~~~l~~~e~~~~~~~l~~~v 313 (584)
. .++.....+ + +.+....+.+.+++. +++++| +++.+.+++. ++.+.
T Consensus 194 ~----~~~~~~~~~-----~-------~~~~~~~~~e~~~~~--~~~~~~~~~le~~~~~~~~~~~-------~~~~~-- 246 (527)
T TIGR00503 194 G----TGGTIQAVR-----Q-------VKGLNNPALDSAVGS--DLAQQLRDELELVEGASNEFDL-------AAFHG-- 246 (527)
T ss_pred c----CCCceeEee-----h-------hccCCChhhhhhhhH--HHHHHHHHHHHHHhhhccccCH-------HHHhc--
Confidence 1 111111110 0 000000011111111 122222 2221122322 12222
Q ss_pred HHhhccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeee--c-CC
Q 007929 314 MQTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIP--A-SD 380 (584)
Q Consensus 314 ~~~~~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~--~-~~ 380 (584)
++++|+ ++.|||++++++|+|.+..... ....+ +++||+|+|||+.+ | ++
T Consensus 247 -~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~---------------~~~~~-~~~~~~~~VFK~~~~mdp~~ 309 (527)
T TIGR00503 247 -GEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT---------------RTVEP-TEEKFSGFVFKIQANMDPKH 309 (527)
T ss_pred -CCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc---------------eecCC-CCCCeeEEEEEEEeccCccc
Confidence 377886 8999999999999997542110 01122 45789999999988 7 48
Q ss_pred CCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-Ee
Q 007929 381 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TL 459 (584)
Q Consensus 381 ~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl 459 (584)
.|+ ++|+|||||+|++|+.|+ |.+++++ +|+++++.++|+++.+|++|.|||||++.|++++ ++| ||
T Consensus 310 ~gr-iaf~RV~sG~l~~g~~v~----~~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~--~~GDtl 377 (527)
T TIGR00503 310 RDR-VAFMRVVSGKYEKGMKLK----HVRTGKD-----VVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI--QIGDTF 377 (527)
T ss_pred Cce-EEEEEEeeeEEcCCCEEE----ecCCCCc-----EEecchhhhhcCCceEcceeCCCCEEEEECCCCc--ccCCEe
Confidence 898 999999999999999999 7777766 6999999999999999999999999999999996 889 99
Q ss_pred ccCCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHH
Q 007929 460 TNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQ 538 (584)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~ 538 (584)
|+.. +..++++++| +|+++++|+|++++|++||.+||++|++||| +.+.++ +|+|++|+||||+|||++++||+
T Consensus 378 ~~~~---~~~~~~i~~~-~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~ 452 (527)
T TIGR00503 378 TQGE---KIKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLK 452 (527)
T ss_pred cCCC---ceeecCCCCC-CcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHH
Confidence 9843 5667788887 8999999999999999999999999999998 999985 89999999999999999999999
Q ss_pred HhhCCCceEEEcCcEEeeEeeee
Q 007929 539 DDFMGGAEIIKSDPVVSFRETVL 561 (584)
Q Consensus 539 ~~f~~~v~v~~~~p~V~yrETi~ 561 (584)
++| ||++.+++|+|+.-==|.
T Consensus 453 ~ey--~v~v~~~~~~v~~~rw~~ 473 (527)
T TIGR00503 453 EEY--NVEARYEPVNVATARWVE 473 (527)
T ss_pred HHh--CCeEEEeCCCceEEEEEc
Confidence 999 999999999999764443
No 18
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=4e-63 Score=545.79 Aligned_cols=377 Identities=26% Similarity=0.448 Sum_probs=316.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+|+| +||+|||||||+++||+.+|.+.+.+....+++|+.++|++||+|+.+...++.|+
T Consensus 2 RNIaI---iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~---------------- 62 (594)
T TIGR01394 2 RNIAI---IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN---------------- 62 (594)
T ss_pred cEEEE---EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC----------------
Confidence 47899 99999999999999999999988766544579999999999999999999999999
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHHHH
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~~~ 168 (584)
+++|||||||||.||..++.++++.+|+|++|||+.+|++.||+.+|+.+...++|+++|+||||+.. +
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~-----------a 131 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS-----------A 131 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC-----------c
Confidence 89999999999999999999999999999999999999999999999999999999999999999973 3
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCCCe
Q 007929 169 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 248 (584)
Q Consensus 169 ~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~~~ 248 (584)
++.++++++...+..+... .. ... ..+.++|+..||+..-
T Consensus 132 ~~~~v~~ei~~l~~~~g~~--~e-~l~---~pvl~~SA~~g~~~~~---------------------------------- 171 (594)
T TIGR01394 132 RPDEVVDEVFDLFAELGAD--DE-QLD---FPIVYASGRAGWASLD---------------------------------- 171 (594)
T ss_pred CHHHHHHHHHHHHHhhccc--cc-ccc---CcEEechhhcCccccc----------------------------------
Confidence 4555566666555332110 00 000 1245567776664200
Q ss_pred eeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHHHHH
Q 007929 249 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 328 (584)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LLd~i 328 (584)
.... . ..+..||+++
T Consensus 172 ~~~~---------------------------------------~--------------------------~gi~~Lld~I 186 (594)
T TIGR01394 172 LDDP---------------------------------------S--------------------------DNMAPLFDAI 186 (594)
T ss_pred Cccc---------------------------------------c--------------------------cCHHHHHHHH
Confidence 0000 0 0025688999
Q ss_pred HhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCC
Q 007929 329 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 408 (584)
Q Consensus 329 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~ 408 (584)
++++|+|.. ++++||.++|||++.+++.|+ ++++||+||+|++||.|++.+.+
T Consensus 187 v~~lP~P~~-------------------------~~~~pl~~~V~~i~~d~~~Gr-v~~gRV~sG~lk~G~~V~~~~~~- 239 (594)
T TIGR01394 187 VRHVPAPKG-------------------------DLDEPLQMLVTNLDYDEYLGR-IAIGRVHRGTVKKGQQVALMKRD- 239 (594)
T ss_pred HHhCCCCCC-------------------------CCCCCEEEEEEEEEeeCCCce-EEEEEEEeCEEccCCEEEEecCC-
Confidence 999999952 457899999999999999999 99999999999999999965431
Q ss_pred CCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCcccccccccCCCceEEEEEEe
Q 007929 409 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 487 (584)
Q Consensus 409 ~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aiep 487 (584)
+. ...++|++|+.++|.+..++++|.|||||+++|++++ ++| |||++. .+.+++++.++ +|+++++++|
T Consensus 240 --~~---~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i--~~Gdtl~~~~--~~~~l~~~~~~-~P~~~~~~~~ 309 (594)
T TIGR01394 240 --GT---IENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI--NIGETIADPE--VPEALPTITVD-EPTLSMTFSV 309 (594)
T ss_pred --Cc---eeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc--CCCCEEeCCC--ccccCCCCCCC-CCeEEEEEEe
Confidence 11 1126899999999999999999999999999999986 788 999987 67788888887 8999999999
Q ss_pred CCC---CChhH------HHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeE
Q 007929 488 KVA---SDLPK------LVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 557 (584)
Q Consensus 488 ~~~---~d~~k------l~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yr 557 (584)
.+. +++.| |.++|.|+.++||+|+|+.+ +++|++|+|+||+||++++++|+++ |+|+.+++|+|+||
T Consensus 310 ~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~yr 386 (594)
T TIGR01394 310 NDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE---GFELQVGRPQVIYK 386 (594)
T ss_pred cCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc---CceEEEeCCEEEEE
Confidence 855 45555 99999999999999999995 8999999999999999999999987 79999999999999
Q ss_pred eeee
Q 007929 558 ETVL 561 (584)
Q Consensus 558 ETi~ 561 (584)
| |.
T Consensus 387 e-i~ 389 (594)
T TIGR01394 387 E-ID 389 (594)
T ss_pred e-CC
Confidence 9 65
No 19
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=5.7e-62 Score=535.62 Aligned_cols=378 Identities=26% Similarity=0.438 Sum_probs=316.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
...+|+| +||+|||||||+++|++.+|.+.+......+++|+.++|++||+|+.+...++.|+
T Consensus 4 ~iRnIaI---iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~-------------- 66 (607)
T PRK10218 4 KLRNIAI---IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN-------------- 66 (607)
T ss_pred CceEEEE---ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC--------------
Confidence 3468999 99999999999999999999887765444589999999999999999999999998
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~ 166 (584)
+++||+||||||.+|..++..+++.+|++|+|||+.+|++.||+.+|+.+...++|+++|+||||+..
T Consensus 67 --~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~---------- 134 (607)
T PRK10218 67 --DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPG---------- 134 (607)
T ss_pred --CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCC----------
Confidence 89999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCC
Q 007929 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (584)
Q Consensus 167 ~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~ 246 (584)
+++.+++++++..+...... . ......+.++|+..||+- +| ...
T Consensus 135 -a~~~~vl~ei~~l~~~l~~~---~---~~~~~PVi~~SA~~G~~~--------------~~---------------~~~ 178 (607)
T PRK10218 135 -ARPDWVVDQVFDLFVNLDAT---D---EQLDFPIVYASALNGIAG--------------LD---------------HED 178 (607)
T ss_pred -CchhHHHHHHHHHHhccCcc---c---cccCCCEEEeEhhcCccc--------------CC---------------ccc
Confidence 45566666666665321100 0 000113556677766631 00 000
Q ss_pred CeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHHH
Q 007929 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (584)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LLd 326 (584)
. .+ .+..|||
T Consensus 179 -----~-------------------------------------~~----------------------------~i~~Lld 188 (607)
T PRK10218 179 -----M-------------------------------------AE----------------------------DMTPLYQ 188 (607)
T ss_pred -----c-------------------------------------cc----------------------------chHHHHH
Confidence 0 00 0257899
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCC
Q 007929 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (584)
Q Consensus 327 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~ 406 (584)
+|++++|+|.. ++++||.++|||++.+++.|+ ++++||+||+|++||.|++.+.
T Consensus 189 ~Ii~~iP~P~~-------------------------~~~~Pl~~~V~k~~~d~~~G~-i~~gRV~sG~lk~Gd~v~~~~~ 242 (607)
T PRK10218 189 AIVDHVPAPDV-------------------------DLDGPFQMQISQLDYNSYVGV-IGIGRIKRGKVKPNQQVTIIDS 242 (607)
T ss_pred HHHHhCCCCCC-------------------------CCCCCeEEEEEeeEecCCCcE-EEEEEEEeCcCcCCCEEEEecC
Confidence 99999999941 457899999999999999999 9999999999999999996432
Q ss_pred CCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCcccccccccCCCceEEEEE
Q 007929 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAV 485 (584)
Q Consensus 407 n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ai 485 (584)
+ +. ...++|++||.++|.++.++++|.|||||+++|++++ .+| |||+.. .+.+++++.++ +|++++++
T Consensus 243 ~---~~---~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GdTl~~~~--~~~~l~~~~~~-~P~~~~~~ 311 (607)
T PRK10218 243 E---GK---TRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL--NISDTVCDTQ--NVEALPALSVD-EPTVSMFF 311 (607)
T ss_pred C---Cc---EeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc--ccCcEEecCC--CcccCCCCCCC-CCeEEEEE
Confidence 1 22 1126899999999999999999999999999999996 788 999887 66778888887 89999999
Q ss_pred EeCC---CCChhHHHH---HHHHHHh---hCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEe
Q 007929 486 QCKV---ASDLPKLVE---GLKRLAK---SDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVS 555 (584)
Q Consensus 486 ep~~---~~d~~kl~~---aL~~L~~---eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~ 555 (584)
.|.+ ++|+.|+.. +|++|.+ +||+|+|+.+ +|+|++|+|+||+||++++++|+++ |+|+.+++|+|+
T Consensus 312 ~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~ 388 (607)
T PRK10218 312 CVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE---GFELAVSRPKVI 388 (607)
T ss_pred EeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC---CceEEEeCCEEE
Confidence 9999 889999866 6666666 9999999995 8999999999999999999999998 799999999999
Q ss_pred eEee
Q 007929 556 FRET 559 (584)
Q Consensus 556 yrET 559 (584)
||||
T Consensus 389 yret 392 (607)
T PRK10218 389 FREI 392 (607)
T ss_pred EEEE
Confidence 9998
No 20
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=7.9e-60 Score=521.58 Aligned_cols=365 Identities=27% Similarity=0.444 Sum_probs=304.5
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+..+|+| +||+|||||||+++|++.+|.+++...+ .+++|+.++|++||+|+.+..+++.|.. .+
T Consensus 6 ~iRNi~I---iGhvd~GKTTL~~rLl~~tg~i~~~~~~-~~~lD~~~~ErerGiTi~~~~v~~~~~~-----------~d 70 (600)
T PRK05433 6 NIRNFSI---IAHIDHGKSTLADRLIELTGTLSEREMK-AQVLDSMDLERERGITIKAQAVRLNYKA-----------KD 70 (600)
T ss_pred cCCEEEE---ECCCCCCHHHHHHHHHHhcCCCcccccc-cccccCchHHhhcCCcccccEEEEEEEc-----------cC
Confidence 3458888 9999999999999999999999876554 6899999999999999999999998861 12
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~ 166 (584)
+.++.+||||||||.||..++.++++.||++|+|||+++|++.+|...|..+...++|+++|+||+|+..
T Consensus 71 g~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~---------- 140 (600)
T PRK05433 71 GETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA---------- 140 (600)
T ss_pred CCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc----------
Confidence 4478999999999999999999999999999999999999999999999988888999999999999873
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCC
Q 007929 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (584)
Q Consensus 167 ~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~ 246 (584)
.++.++.+++...+. +.+. .+...|+..|++
T Consensus 141 -a~~~~v~~ei~~~lg-----------~~~~--~vi~iSAktG~G----------------------------------- 171 (600)
T PRK05433 141 -ADPERVKQEIEDVIG-----------IDAS--DAVLVSAKTGIG----------------------------------- 171 (600)
T ss_pred -ccHHHHHHHHHHHhC-----------CCcc--eEEEEecCCCCC-----------------------------------
Confidence 223333444433331 0000 122233322211
Q ss_pred CeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHHH
Q 007929 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (584)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LLd 326 (584)
+..|++
T Consensus 172 --------------------------------------------------------------------------I~~Ll~ 177 (600)
T PRK05433 172 --------------------------------------------------------------------------IEEVLE 177 (600)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 145788
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCC
Q 007929 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (584)
Q Consensus 327 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~ 406 (584)
.|++.+|+|.. ++++||.++|||++.+++.|. ++++||++|+|++||.|++.+
T Consensus 178 ~I~~~lp~P~~-------------------------~~~~pl~~~Vfd~~~d~~~G~-v~~~rV~sG~Lk~Gd~i~~~~- 230 (600)
T PRK05433 178 AIVERIPPPKG-------------------------DPDAPLKALIFDSWYDNYRGV-VVLVRVVDGTLKKGDKIKMMS- 230 (600)
T ss_pred HHHHhCccccC-------------------------CCCCCceEEEEEEEecCCCce-EEEEEEEcCEEecCCEEEEec-
Confidence 88889999952 457899999999999999999 999999999999999999543
Q ss_pred CCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE-c---cCcccccce-EeccCCCCCc--ccccccccCCCc
Q 007929 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQYITKNA-TLTNEKEVDA--HPIRAMKFSVSP 479 (584)
Q Consensus 407 n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~-g---l~~~~~~tg-Tl~~~~~~~~--~~~~~~~~~~~P 479 (584)
++.+ ++|.+|+.+.+ +..+++++.||||+++. + ++++ ++| ||++.. .+ .+++++..| +|
T Consensus 231 ---~~~~-----~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~--~~Gdtl~~~~--~~~~~~l~~~~~~-~P 296 (600)
T PRK05433 231 ---TGKE-----YEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDA--RVGDTITLAK--NPAEEPLPGFKEV-KP 296 (600)
T ss_pred ---CCce-----EEEEEeeccCC-CceECcEEcCCCEEEEeccccccccc--CCCCEEECCC--CccccCCCCCCCC-Cc
Confidence 3444 58999996655 88999999999999886 4 4454 788 998876 33 467777776 89
Q ss_pred eEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEe-----cChhhHHHHHHHHHHhhCCCceEEEcCcEE
Q 007929 480 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVV 554 (584)
Q Consensus 480 v~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g-----~GelHLe~~l~rL~~~f~~~v~v~~~~p~V 554 (584)
+++++++|.+.+|++||.+||++|++|||||.++ .||+|.+++| ||+||||++++||+++| |+++.+++|+|
T Consensus 297 ~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~--~~~v~~~~P~V 373 (600)
T PRK05433 297 MVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE-PETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSV 373 (600)
T ss_pred EEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE-ecCCcceecceEeecHHHHHHHHHHHHHHHhh--CceEEEecCEE
Confidence 9999999999999999999999999999999997 6899999999 99999999999999999 99999999999
Q ss_pred eeEeeeecc
Q 007929 555 SFRETVLEK 563 (584)
Q Consensus 555 ~yrETi~~~ 563 (584)
+|||||++.
T Consensus 374 ~Yreti~~g 382 (600)
T PRK05433 374 VYEVTLTDG 382 (600)
T ss_pred EEEEEEeCC
Confidence 999999874
No 21
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.2e-58 Score=511.61 Aligned_cols=365 Identities=28% Similarity=0.446 Sum_probs=300.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+..||+| +||+|||||||+++|++.+|.+++...+ .+++|+.++|++||+|+.+..+++.|.. .+
T Consensus 2 ~iRNi~I---IGh~d~GKTTL~~rLl~~~g~i~~~~~~-~~~~D~~~~ErerGiTi~~~~v~~~~~~-----------~~ 66 (595)
T TIGR01393 2 NIRNFSI---IAHIDHGKSTLADRLLEYTGAISEREMR-EQVLDSMDLERERGITIKAQAVRLNYKA-----------KD 66 (595)
T ss_pred CeeEEEE---ECCCCCCHHHHHHHHHHHcCCCcccccc-ccccCCChHHHhcCCCeeeeEEEEEEEc-----------CC
Confidence 3468999 9999999999999999999999876544 6899999999999999999999998851 11
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~ 166 (584)
+..+.++|||||||.+|..++.++++.||++|+|+|+++|++.+|...|..+...++|+++|+||+|+.. .
T Consensus 67 g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~----~----- 137 (595)
T TIGR01393 67 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPS----A----- 137 (595)
T ss_pred CCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc----c-----
Confidence 3358999999999999999999999999999999999999999999999888888999999999999863 1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCC
Q 007929 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (584)
Q Consensus 167 ~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~ 246 (584)
...+..+++...+ +. .+ ..+...|+..|.+
T Consensus 138 --~~~~~~~el~~~l--------g~---~~--~~vi~vSAktG~G----------------------------------- 167 (595)
T TIGR01393 138 --DPERVKKEIEEVI--------GL---DA--SEAILASAKTGIG----------------------------------- 167 (595)
T ss_pred --CHHHHHHHHHHHh--------CC---Cc--ceEEEeeccCCCC-----------------------------------
Confidence 1222333333333 10 00 0122223322110
Q ss_pred CeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHHH
Q 007929 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (584)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LLd 326 (584)
+..|++
T Consensus 168 --------------------------------------------------------------------------I~~Lle 173 (595)
T TIGR01393 168 --------------------------------------------------------------------------IEEILE 173 (595)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 245788
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCC
Q 007929 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (584)
Q Consensus 327 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~ 406 (584)
.+++++|+|.. ++++||.++|||++.+++.|. ++++||++|+|++||.|++++
T Consensus 174 ~I~~~lp~p~~-------------------------~~~~pl~~~V~~~~~d~~~G~-v~~~rV~sG~lk~Gd~v~~~~- 226 (595)
T TIGR01393 174 AIVKRVPPPKG-------------------------DPDAPLKALIFDSHYDNYRGV-VALVRVFEGTIKPGDKIRFMS- 226 (595)
T ss_pred HHHHhCCCCCC-------------------------CCCCCeEEEEEEEEEeCCCcE-EEEEEEECCEEecCCEEEEec-
Confidence 88889999952 457899999999999999999 999999999999999999553
Q ss_pred CCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE-c---cCcccccce-EeccCCCCCc--ccccccccCCCc
Q 007929 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQYITKNA-TLTNEKEVDA--HPIRAMKFSVSP 479 (584)
Q Consensus 407 n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~-g---l~~~~~~tg-Tl~~~~~~~~--~~~~~~~~~~~P 479 (584)
++.+ ++|.+|+.+.+.. .+++++.||||+++. + ++++ ++| ||++.+ .+ .+++++.+| +|
T Consensus 227 ---~~~~-----~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~--~~Gdtl~~~~--~~~~~~l~~~~~~-~P 292 (595)
T TIGR01393 227 ---TGKE-----YEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDV--RVGDTITHVK--NPAKEPLPGFKEV-KP 292 (595)
T ss_pred ---CCCe-----eEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCcc--CCCCEEECCC--CccccCCCCCcCC-Cc
Confidence 3444 5899999666655 999999999998886 3 4554 788 998876 33 367777776 89
Q ss_pred eEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEe-----cChhhHHHHHHHHHHhhCCCceEEEcCcEE
Q 007929 480 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVV 554 (584)
Q Consensus 480 v~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g-----~GelHLe~~l~rL~~~f~~~v~v~~~~p~V 554 (584)
+++.+++|.+.+|++||.+||++|.+|||+|.|+. ||+|.+++| ||+||||++++||+++| |+++.+++|+|
T Consensus 293 ~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~-e~~~~l~~g~r~g~lG~lHlei~~erL~re~--~~~v~~~~P~V 369 (595)
T TIGR01393 293 MVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYEP-ESSPALGFGFRCGFLGLLHMEIIQERLEREF--NLDLITTAPSV 369 (595)
T ss_pred EEEEEEEECCcccHHHHHHHHHHHhccCCeEEEEe-cCCcccccccEEeeeeHHHHHHHHHHHHHHh--CCeeEEecCEE
Confidence 99999999999999999999999999999999985 888888774 99999999999999999 99999999999
Q ss_pred eeEeeeecc
Q 007929 555 SFRETVLEK 563 (584)
Q Consensus 555 ~yrETi~~~ 563 (584)
+|||||++.
T Consensus 370 ~Yreti~~g 378 (595)
T TIGR01393 370 IYRVYLTNG 378 (595)
T ss_pred EEEEEecCC
Confidence 999999864
No 22
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1e-57 Score=462.23 Aligned_cols=379 Identities=26% Similarity=0.447 Sum_probs=319.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+||| ++|+|||||||++.||.++|.....+...-+++|+...|+||||||-+....+.|+
T Consensus 6 RNIAI---IAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~---------------- 66 (603)
T COG1217 6 RNIAI---IAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN---------------- 66 (603)
T ss_pred ceeEE---EEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC----------------
Confidence 58999 99999999999999999999988776655689999999999999999999999999
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHHHH
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~~~ 168 (584)
+++|||+|||||.||-+|+++.|...|+++++|||.+|..+||+-+++.|++.++++|+||||+|++. +.|
T Consensus 67 ~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~----Arp----- 137 (603)
T COG1217 67 GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPD----ARP----- 137 (603)
T ss_pred CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCC----CCH-----
Confidence 89999999999999999999999999999999999999999999999999999999999999999994 444
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCCCe
Q 007929 169 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 248 (584)
Q Consensus 169 ~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~~~ 248 (584)
.++++++-..|-..... +.+.. ..+.++|+..||... ++...
T Consensus 138 --~~Vvd~vfDLf~~L~A~---deQLd---FPivYAS~~~G~a~~-----------------------------~~~~~- 179 (603)
T COG1217 138 --DEVVDEVFDLFVELGAT---DEQLD---FPIVYASARNGTASL-----------------------------DPEDE- 179 (603)
T ss_pred --HHHHHHHHHHHHHhCCC---hhhCC---CcEEEeeccCceecc-----------------------------Ccccc-
Confidence 44444443333222111 11222 247889999888520 00000
Q ss_pred eeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHHHHH
Q 007929 249 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 328 (584)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LLd~i 328 (584)
. .. ..+|+++|
T Consensus 180 -------~--------------------------------------~~------------------------m~pLfe~I 190 (603)
T COG1217 180 -------A--------------------------------------DD------------------------MAPLFETI 190 (603)
T ss_pred -------c--------------------------------------cc------------------------hhHHHHHH
Confidence 0 00 16789999
Q ss_pred HhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCC
Q 007929 329 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 408 (584)
Q Consensus 329 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~ 408 (584)
++++|+|.. ++++||.++|+-.-+++|.|+ ++.+||++|++|+|+.|.++..+
T Consensus 191 ~~hvp~P~~-------------------------~~d~PlQ~qvt~Ldyn~y~Gr-IgigRi~~G~vk~~q~V~~i~~~- 243 (603)
T COG1217 191 LDHVPAPKG-------------------------DLDEPLQMQVTQLDYNSYVGR-IGIGRIFRGTVKPNQQVALIKSD- 243 (603)
T ss_pred HHhCCCCCC-------------------------CCCCCeEEEEEeeccccccce-eEEEEEecCcccCCCeEEEEcCC-
Confidence 999999962 678999999999999999999 99999999999999999988532
Q ss_pred CCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCcccccccccCCCceEEEEEEe
Q 007929 409 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 487 (584)
Q Consensus 409 ~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aiep 487 (584)
+.. ...||.+++-+.|-++.++++|.|||||||+|+++. ..| |+|++. .+.+++.+..- +|.+++.+..
T Consensus 244 --g~~---~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~--~igdTi~d~~--~~~aLp~l~iD-ePTlsMtf~v 313 (603)
T COG1217 244 --GTT---ENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI--NIGDTICDPD--NPEALPALSVD-EPTLSMTFSV 313 (603)
T ss_pred --CcE---EeeEEEeeeeccceeeeecccccccCEEEEcCcccc--cccccccCCC--CccCCCCcccC-CCceEEEEEe
Confidence 222 236999999999999999999999999999999997 677 999998 77788877766 8999999977
Q ss_pred CCC---------CChhHHHHHHHHHHhhCCceEEEE-cCCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeE
Q 007929 488 KVA---------SDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 557 (584)
Q Consensus 488 ~~~---------~d~~kl~~aL~~L~~eDPsl~v~~-~etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yr 557 (584)
.+. -...++.+.|.+-.+.+.+|+|+. ++-..+.++|.|||||.++++.|||+ |.|+.+|.|+|.||
T Consensus 314 N~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE---GfEl~VsrP~Vi~k 390 (603)
T COG1217 314 NDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE---GFELQVSRPEVIIK 390 (603)
T ss_pred cCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc---ceEEEecCceEEEE
Confidence 643 256789999999999999999987 45689999999999999999999998 89999999999999
Q ss_pred eeeecc
Q 007929 558 ETVLEK 563 (584)
Q Consensus 558 ETi~~~ 563 (584)
| |.+.
T Consensus 391 e-idG~ 395 (603)
T COG1217 391 E-IDGV 395 (603)
T ss_pred e-cCCc
Confidence 8 6543
No 23
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-54 Score=444.41 Aligned_cols=367 Identities=28% Similarity=0.406 Sum_probs=304.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+..|++| ++|+|||||||+++||..+|.+++... ..+++|..+.|+||||||++...++.|+ +
T Consensus 59 ~iRNfsI---IAHVDHGKSTLaDrLLe~tg~i~~~~~-q~q~LDkl~vERERGITIkaQtasify~-------------~ 121 (650)
T KOG0462|consen 59 NIRNFSI---IAHVDHGKSTLADRLLELTGTIDNNIG-QEQVLDKLQVERERGITIKAQTASIFYK-------------D 121 (650)
T ss_pred hccceEE---EEEecCCcchHHHHHHHHhCCCCCCCc-hhhhhhhhhhhhhcCcEEEeeeeEEEEE-------------c
Confidence 5568888 999999999999999999998876543 3689999999999999999999999999 2
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~ 166 (584)
++.|.+|+||||||.||..|+.+.+..||||||||||.+|++.||...+..|.+.++.+|.|+||+|++.
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~---------- 191 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPS---------- 191 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCC----------
Confidence 4569999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCC
Q 007929 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (584)
Q Consensus 167 ~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~ 246 (584)
++.+++..++.+.|. +.|. .+.+.|++.||+
T Consensus 192 -adpe~V~~q~~~lF~-----------~~~~--~~i~vSAK~G~~----------------------------------- 222 (650)
T KOG0462|consen 192 -ADPERVENQLFELFD-----------IPPA--EVIYVSAKTGLN----------------------------------- 222 (650)
T ss_pred -CCHHHHHHHHHHHhc-----------CCcc--ceEEEEeccCcc-----------------------------------
Confidence 445555556555542 1222 466667666552
Q ss_pred CeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHHH
Q 007929 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (584)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LLd 326 (584)
+..+|+
T Consensus 223 --------------------------------------------------------------------------v~~lL~ 228 (650)
T KOG0462|consen 223 --------------------------------------------------------------------------VEELLE 228 (650)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 134799
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCC
Q 007929 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (584)
Q Consensus 327 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~ 406 (584)
+|++.+|+|.. ..++||.+++|..+.|.+.|. ++++||..|.+++||.|..+
T Consensus 229 AII~rVPpP~~-------------------------~~d~plr~Lifds~yD~y~G~-I~~vrv~~G~vrkGdkV~~~-- 280 (650)
T KOG0462|consen 229 AIIRRVPPPKG-------------------------IRDAPLRMLIFDSEYDEYRGV-IALVRVVDGVVRKGDKVQSA-- 280 (650)
T ss_pred HHHhhCCCCCC-------------------------CCCcchHHHhhhhhhhhhcce-EEEEEEeeeeeecCCEEEEe--
Confidence 99999999963 457999999999999999999 99999999999999999854
Q ss_pred CCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEc-cCcccccce-EeccCCC-CCcccccccccCCCceEEE
Q 007929 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG-LDQYITKNA-TLTNEKE-VDAHPIRAMKFSVSPVVRV 483 (584)
Q Consensus 407 n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~g-l~~~~~~tg-Tl~~~~~-~~~~~~~~~~~~~~Pv~~~ 483 (584)
+++++ +..+.-.+..+..-...+++...+|+|++..| +++. ..| |+++..- .....++... |..|++++
T Consensus 281 --~t~~~---yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea--~IGdTi~~~~~~~~v~tl~~~~-~~~pMvFv 352 (650)
T KOG0462|consen 281 --ATGKS---YEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEA--QIGDTIAHKSVTKAVETLPGFE-PTKPMVFV 352 (650)
T ss_pred --ecCcc---eEeEEeEEeccCceeeeeecccccceeEecccccccc--cccceeeecccCcccCcCCCCC-CCcceEEe
Confidence 33333 22455556666666677777788889988888 8886 678 9987651 0112333333 34899999
Q ss_pred EEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCC----cEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeEee
Q 007929 484 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESG----EHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559 (584)
Q Consensus 484 aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etg----e~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yrET 559 (584)
...|.+.+|...|..++.||..+|+++.+..+.++ -+.+++.|.|||+|..+||+++| |.++-+++|.|+||=-
T Consensus 353 g~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Ey--g~elivt~PtV~Yr~~ 430 (650)
T KOG0462|consen 353 GLFPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREY--GAELIVTPPTVPYRVV 430 (650)
T ss_pred ccccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhc--CceeeecCCcceEEEE
Confidence 99999999999999999999999999999987554 46999999999999999999999 9999999999999944
Q ss_pred ee
Q 007929 560 VL 561 (584)
Q Consensus 560 i~ 561 (584)
..
T Consensus 431 ~~ 432 (650)
T KOG0462|consen 431 YS 432 (650)
T ss_pred ec
Confidence 33
No 24
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-52 Score=417.33 Aligned_cols=439 Identities=22% Similarity=0.330 Sum_probs=319.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccC------CCeeeeCChhhHhhhccceecceEEEEeecchhhhhc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA------GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~------g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~ 80 (584)
+....|| +.|+|+|||||++.||...|+|...+. +..+.+|++.-|++||||+.+++.+|.|.
T Consensus 11 rRRTFAI---ISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~-------- 79 (528)
T COG4108 11 RRRTFAI---ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA-------- 79 (528)
T ss_pred hhcceeE---EecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC--------
Confidence 4456677 999999999999999998888866542 34578999999999999999999999999
Q ss_pred ccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccccccc
Q 007929 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 160 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~ 160 (584)
++.+||+|||||.||...+.+.|.++|.||+|+||..|+++||.++++-|.-.++|++=|||||||..
T Consensus 80 --------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~---- 147 (528)
T COG4108 80 --------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREG---- 147 (528)
T ss_pred --------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeecccccc----
Confidence 89999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCc
Q 007929 161 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 240 (584)
Q Consensus 161 ~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~ 240 (584)
.+--+++++|.+.|+ +...|. ++|+|.+.. |.+.|.-. .-.-.+
T Consensus 148 -------rdP~ELLdEiE~~L~---------i~~~Pi--tWPIG~gk~--------F~Gvy~l~------~~~v~~---- 191 (528)
T COG4108 148 -------RDPLELLDEIEEELG---------IQCAPI--TWPIGMGKD--------FKGVYHLY------NDEVEL---- 191 (528)
T ss_pred -------CChHHHHHHHHHHhC---------cceecc--cccccCCcc--------cceeeeec------cCEEEE----
Confidence 334456777777772 234554 899998864 44434110 000001
Q ss_pred ccCcCC---CeeeecCCC--CCc----cchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHH
Q 007929 241 FFDPAT---RKWTSRNTG--SPT----CKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMK 311 (584)
Q Consensus 241 ~~~~~~---~~~~~~~~~--~~~----~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~ 311 (584)
|.+.. +.......+ .++ ++..+.+.+.+-+.-+.++..+.| .+.||++ ++|+
T Consensus 192 -y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd---~~~fl~G---~~TP------------ 252 (528)
T COG4108 192 -YESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFD---LEAFLAG---ELTP------------ 252 (528)
T ss_pred -eccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccC---HHHHhcC---Cccc------------
Confidence 22211 000000001 000 011111111111111111111111 1222222 1111
Q ss_pred HHHHhhccc------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCC-CCCeEEEEEeeeecCCCC--
Q 007929 312 RVMQTWLPA------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDP-EGPLMLYVSKMIPASDKG-- 382 (584)
Q Consensus 312 ~v~~~~~P~------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pl~~~VfK~~~~~~~g-- 382 (584)
.||.. ++.+|++++++.|+|...+... +...| +..|.++|||+.++.+..
T Consensus 253 ----VFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~-----------------~~v~p~e~kfsGFVFKIQANMDp~HR 311 (528)
T COG4108 253 ----VFFGSALGNFGVDHFLDALVDWAPSPRARQADT-----------------REVEPTEDKFSGFVFKIQANMDPKHR 311 (528)
T ss_pred ----eEehhhhhccCHHHHHHHHHhhCCCCCcccCCc-----------------CcccCCCCccceEEEEEEcCCCcccc
Confidence 33332 7999999999999997653210 11223 344999999998754432
Q ss_pred ceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-Eecc
Q 007929 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTN 461 (584)
Q Consensus 383 ~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~ 461 (584)
.+++|+||.||.+.+|+.+. ..++|+. .+++.-..+++++++.+++|.||||+++..=... +.| |++.
T Consensus 312 DRIAFmRv~SGkferGMkv~----h~rtGK~-----~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~--~IGDT~t~ 380 (528)
T COG4108 312 DRIAFMRVCSGKFERGMKVT----HVRTGKD-----VKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTI--QIGDTFTE 380 (528)
T ss_pred cceeEEEeccccccCCceee----eeecCCc-----eEecchHhhhhhhhhhhhhccCCCeEeccCCCce--eecceeec
Confidence 23999999999999999999 6777876 6888889999999999999999999999765444 667 8877
Q ss_pred CCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEecChhhHHHHHHHHHHhh
Q 007929 462 EKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDF 541 (584)
Q Consensus 462 ~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLe~~l~rL~~~f 541 (584)
.. ...+.+++.- .|-+...|..+++....+|.+||..|++|-..-.++-..+.+.||...|.||+||+.+||+++|
T Consensus 381 Ge---~l~f~giP~F-aPE~frrvr~kd~~K~Kql~Kgl~QL~eEGavQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY 456 (528)
T COG4108 381 GE---KLKFTGIPNF-APELFRRVRLKDPLKQKQLKKGLEQLAEEGAVQVFKPLDGNDLILGAVGQLQFEVVQARLKNEY 456 (528)
T ss_pred Cc---eeeecCCCCC-CHHHHHHHhcCChHHHHHHHHHHHHHhhcCeeEEEecCCCCCceEEeeeeeehHHHHHHHHhhh
Confidence 54 5666676655 6888899999999999999999999999985544444578999999999999999999999999
Q ss_pred CCCceEEEcCcEEeeEeeee
Q 007929 542 MGGAEIIKSDPVVSFRETVL 561 (584)
Q Consensus 542 ~~~v~v~~~~p~V~yrETi~ 561 (584)
+|++.+.+-.++..==|.
T Consensus 457 --~ve~~~e~~~~~~aRWi~ 474 (528)
T COG4108 457 --NVEAVFEPVNFSTARWIE 474 (528)
T ss_pred --CCeEEEeeccceEEEEec
Confidence 999999877665543443
No 25
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-50 Score=412.45 Aligned_cols=369 Identities=28% Similarity=0.430 Sum_probs=299.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+..|.+| ++|.|||||||+++||..+|.++.+.-. ..++|.+..|+||||||++..+.+.|+ ..+
T Consensus 8 ~IRNFsI---IAHIDHGKSTLaDRlle~t~~~~~Rem~-~Q~LDsMdiERERGITIKaq~v~l~Yk-----------~~~ 72 (603)
T COG0481 8 NIRNFSI---IAHIDHGKSTLADRLLELTGGLSEREMR-AQVLDSMDIERERGITIKAQAVRLNYK-----------AKD 72 (603)
T ss_pred hccceEE---EEEecCCcchHHHHHHHHhcCcChHHHH-HHhhhhhhhHhhcCceEEeeEEEEEEE-----------eCC
Confidence 4456777 9999999999999999999999877554 579999999999999999999999998 334
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~ 166 (584)
+..|.+|+||||||+||.-|+.++|.+|+||+|||||+.|++.||..-...|...++-+|-|+||+|++ .++|+.+
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP----~Adperv 148 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP----AADPERV 148 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC----CCCHHHH
Confidence 568999999999999999999999999999999999999999999999999999999999999999999 5556544
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCC
Q 007929 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (584)
Q Consensus 167 ~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~ 246 (584)
.+ ++...+ | +.+. .....|+..|.+
T Consensus 149 k~-------eIe~~i--------G---id~~--dav~~SAKtG~g----------------------------------- 173 (603)
T COG0481 149 KQ-------EIEDII--------G---IDAS--DAVLVSAKTGIG----------------------------------- 173 (603)
T ss_pred HH-------HHHHHh--------C---CCcc--hheeEecccCCC-----------------------------------
Confidence 44 443333 1 1111 223333332221
Q ss_pred CeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHHH
Q 007929 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (584)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LLd 326 (584)
+..+|+
T Consensus 174 --------------------------------------------------------------------------I~~iLe 179 (603)
T COG0481 174 --------------------------------------------------------------------------IEDVLE 179 (603)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 245789
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCC
Q 007929 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (584)
Q Consensus 327 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~ 406 (584)
+|++.+|+|.. ++++|+-|++|..+.|++.|- ++++||+.|++++||.|.+++.
T Consensus 180 ~Iv~~iP~P~g-------------------------~~~~pLkALifDS~yD~Y~GV-v~~vRi~dG~ik~gdki~~m~t 233 (603)
T COG0481 180 AIVEKIPPPKG-------------------------DPDAPLKALIFDSWYDNYLGV-VVLVRIFDGTLKKGDKIRMMST 233 (603)
T ss_pred HHHhhCCCCCC-------------------------CCCCcceEEEEeccccccceE-EEEEEEeeceecCCCEEEEEec
Confidence 99999999952 678999999999999999999 9999999999999999998753
Q ss_pred CCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE-ccCccc-ccce-EeccCCCCCcccccccccCCCceEEE
Q 007929 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GLDQYI-TKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 483 (584)
Q Consensus 407 n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~-gl~~~~-~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ 483 (584)
+++ ..|.++-++. ......+++.||+++-+. ++++.. ++.| |++........+++..+-. .|++.+
T Consensus 234 ----g~~-----y~V~evGvft-P~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~-~P~Vf~ 302 (603)
T COG0481 234 ----GKE-----YEVDEVGIFT-PKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEV-KPMVFA 302 (603)
T ss_pred ----CCE-----EEEEEEeecc-CCccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcC-CceEEE
Confidence 333 3455555544 478899999999997663 444321 2567 7763321145677777655 899999
Q ss_pred EEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCC----CcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeEee
Q 007929 484 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEES----GEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559 (584)
Q Consensus 484 aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~et----ge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yrET 559 (584)
.+.|.+..|.+.|.+||.||.-.|.+|.++.+-| --+-+..+|-||||++.+||+|+| ++++-...|.|.|+=.
T Consensus 303 GlyPid~~dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf--~ldlI~TaPsV~Y~v~ 380 (603)
T COG0481 303 GLYPVDSDDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVYKVE 380 (603)
T ss_pred eecccChhHHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhh--CcceEecCCceEEEEE
Confidence 9999999999999999999999999999987432 246778899999999999999999 9999999999999966
Q ss_pred eec
Q 007929 560 VLE 562 (584)
Q Consensus 560 i~~ 562 (584)
.+.
T Consensus 381 ~~~ 383 (603)
T COG0481 381 LTD 383 (603)
T ss_pred EcC
Confidence 544
No 26
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=1.6e-41 Score=341.91 Aligned_cols=257 Identities=29% Similarity=0.385 Sum_probs=218.1
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
+|+| +||+|||||||+++|++.+|.+.+.+. .+++++|+.++|++||+|++++..++.|+
T Consensus 1 nv~i---vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--------------- 62 (270)
T cd01886 1 NIGI---IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--------------- 62 (270)
T ss_pred CEEE---EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC---------------
Confidence 5788 999999999999999999998876532 24789999999999999999999999999
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHHH
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 167 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~~ 167 (584)
++++++||||||.+|..++.++++.+|++|+|||+..|++.+|+.+|+.+.+.++|+++|+||+|+..
T Consensus 63 -~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~----------- 130 (270)
T cd01886 63 -DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG----------- 130 (270)
T ss_pred -CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC-----------
Confidence 89999999999999999999999999999999999999999999999999889999999999999984
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCCC
Q 007929 168 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 247 (584)
Q Consensus 168 ~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~~ 247 (584)
.++.+++++++..++ . .|...++|++......+ .||+..++++.|.+. .++
T Consensus 131 a~~~~~~~~l~~~l~--------~---~~~~~~~Pisa~~~f~g--------------~vd~~~~~a~~~~~~----~~~ 181 (270)
T cd01886 131 ADFFRVVEQIREKLG--------A---NPVPLQLPIGEEDDFRG--------------VVDLIEMKALYWDGE----LGE 181 (270)
T ss_pred CCHHHHHHHHHHHhC--------C---CceEEEeccccCCCceE--------------EEEccccEEEecccC----CCc
Confidence 355667777777762 1 12223677766543332 378888888877321 122
Q ss_pred eeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhccc------
Q 007929 248 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWLPA------ 320 (584)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~P~------ 320 (584)
++... .+|..+.+.+.+.|.+|+|.+++.||++||+||++ .+++.+|+. .+|.+++.. +++|+
T Consensus 182 ~~~~~-----~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~PV~~gSa~ 251 (270)
T cd01886 182 KIEET-----EIPEDLLEEAEEAREELIETLAEFDDELMEKYLEG--EEITEEEIK---AAIRKGTIANKIVPVLCGSAF 251 (270)
T ss_pred eeEEe-----cCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHcCcEEEEEeCcCC
Confidence 34433 37888899999999999999999999999999999 899999998 788888764 89997
Q ss_pred ----hHHHHHHHHhcCCCh
Q 007929 321 ----SSALLEMMIFHLPSP 335 (584)
Q Consensus 321 ----~~~LLd~i~~~lPsP 335 (584)
++.|||++++++|+|
T Consensus 252 ~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 252 KNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CCcCHHHHHHHHHHhcCCC
Confidence 799999999999998
No 27
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=2.9e-39 Score=315.73 Aligned_cols=203 Identities=59% Similarity=0.976 Sum_probs=181.1
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+||| +||+|||||||+++|++.+|.+.+...|..+++|++++|++||+|++++.+++.|..... ...++++
T Consensus 2 Nvai---iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~------~~~~~~~ 72 (222)
T cd01885 2 NICI---IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEE------DKADGNE 72 (222)
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcc------cccCCCc
Confidence 7888 999999999999999999999988877778999999999999999999999998873110 0123447
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHHHHH
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 169 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~~~~ 169 (584)
+.++|||||||.+|..++..+++.+|+|++|||+.+|+..+|+.+|+++...++|+++|+||||+...+++++++++|.+
T Consensus 73 ~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~ 152 (222)
T cd01885 73 YLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQR 152 (222)
T ss_pred eEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCC-----CcceecccCCccccccCCcceeeehhhHHHHh
Q 007929 170 FQKVIENANVIMATYEDPLL-----GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (584)
Q Consensus 170 ~~~~l~~v~~~l~~~~~~~~-----~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y 221 (584)
++++++++|..+..+..+.. +.+.++|.++||.|+|+.+||+|++++|+++|
T Consensus 153 ~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~ 209 (222)
T cd01885 153 LARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIY 209 (222)
T ss_pred HHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchH
Confidence 99999999999988753311 23468899999999999999999998887655
No 28
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=1e-36 Score=301.77 Aligned_cols=224 Identities=29% Similarity=0.379 Sum_probs=190.1
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
+|++ +||+|+|||||+++|++.+|.+.+.+. .+++++|+.++|++||+|+......+.|+
T Consensus 1 ni~i---~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~--------------- 62 (237)
T cd04168 1 NIGI---LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE--------------- 62 (237)
T ss_pred CEEE---EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC---------------
Confidence 5788 999999999999999999999887652 24688999999999999999999999998
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHHH
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 167 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~~ 167 (584)
++++++||||||.+|..++..+++.+|++++|+|+.+|++.+++.+|+.+.+.++|.++|+||+|+..
T Consensus 63 -~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~----------- 130 (237)
T cd04168 63 -DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG----------- 130 (237)
T ss_pred -CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC-----------
Confidence 89999999999999999999999999999999999999999999999998889999999999999984
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCCC
Q 007929 168 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 247 (584)
Q Consensus 168 ~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~~ 247 (584)
+++.+++++++..++ . .+.|. ++|. |...
T Consensus 131 a~~~~~~~~i~~~~~--------~-~~~~~--~~p~------~~~~---------------------------------- 159 (237)
T cd04168 131 ADLEKVYQEIKEKLS--------S-DIVPM--QKVG------LAPN---------------------------------- 159 (237)
T ss_pred CCHHHHHHHHHHHHC--------C-CeEEE--ECCc------Eeee----------------------------------
Confidence 466778888888872 2 22332 4441 2110
Q ss_pred eeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhccc------
Q 007929 248 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWLPA------ 320 (584)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~P~------ 320 (584)
+... .+.+.+|+|++++.||++||+||++ .+++++|+. .+|++++.. +++|+
T Consensus 160 -~~~~---------------~~~~~~l~e~vae~dd~l~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~Pv~~gsa~ 218 (237)
T cd04168 160 -ICET---------------NEIDDEFWETLAEGDDELLEKYLEG--GPIEELELD---NELSARIAKRKVFPVYHGSAL 218 (237)
T ss_pred -eeee---------------eeccHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCeEEEEEcccc
Confidence 0000 0113688999999999999999998 999999998 788888764 89997
Q ss_pred ----hHHHHHHHHhcCCCh
Q 007929 321 ----SSALLEMMIFHLPSP 335 (584)
Q Consensus 321 ----~~~LLd~i~~~lPsP 335 (584)
++.|||++++++|||
T Consensus 219 ~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 219 KGIGIEELLEGITKLFPTS 237 (237)
T ss_pred CCcCHHHHHHHHHHhcCCC
Confidence 799999999999998
No 29
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=8.1e-37 Score=307.48 Aligned_cols=249 Identities=21% Similarity=0.244 Sum_probs=200.7
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccC------CCeeeeCChhhHhhhccceecceEEEEeecchhhhhcc
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA------GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 81 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~------g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~ 81 (584)
..+|+| +||+|+|||||+++|++.+|.+.+.+. .+++++|+.++|++||+|+..+..++.|+
T Consensus 2 ~Rni~i---vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~--------- 69 (267)
T cd04169 2 RRTFAI---ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR--------- 69 (267)
T ss_pred ccEEEE---EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC---------
Confidence 358999 999999999999999999999887642 13578999999999999999999999999
Q ss_pred cccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccC
Q 007929 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQV 161 (584)
Q Consensus 82 ~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~ 161 (584)
++++++||||||.+|..++..+++.+|++|+|+|++.|++.+++.+|+.+...++|+++|+||||+..
T Consensus 70 -------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~----- 137 (267)
T cd04169 70 -------DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREG----- 137 (267)
T ss_pred -------CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCC-----
Confidence 89999999999999999999999999999999999999999999999998888999999999999974
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcc
Q 007929 162 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 241 (584)
Q Consensus 162 ~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~ 241 (584)
+.+.+++++++..++ . ...| .++|++.+....++ ||+..++++.|.+.
T Consensus 138 ------a~~~~~~~~l~~~l~--------~-~~~~--~~~Pi~~~~~~~g~--------------vd~~~~~a~~~~~~- 185 (267)
T cd04169 138 ------RDPLELLDEIEEELG--------I-DCTP--LTWPIGMGKDFKGV--------------YDRRTGEVELYDRG- 185 (267)
T ss_pred ------CCHHHHHHHHHHHHC--------C-Ccee--EEecccCCCceEEE--------------EEhhhCEEEEecCC-
Confidence 455667777877762 1 2334 37888877654443 78887777766211
Q ss_pred cCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhccc
Q 007929 242 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWLPA 320 (584)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~P~ 320 (584)
...+.+... .+|..+ .|.+++.||++||+|+++ .+++.+++. ..+.+++.. +++|+
T Consensus 186 --~~~~~~~~~-----~~p~~~-----------~e~~~e~~~~l~e~~~e~--~~~~~~~~~---~~~~~~~~~~~~~Pv 242 (267)
T cd04169 186 --AGGATIAPE-----ETKGLD-----------DPKLDELGGDLAEQLREE--LELLEGAGP---EFDQEAFLAGELTPV 242 (267)
T ss_pred --CCCccceec-----cCCccc-----------HHHHHhcCHHHHHHHhCC--CccchhhhH---HHhHHHHHcCCEEEE
Confidence 011111111 134332 288999999999999998 888888865 555666553 89997
Q ss_pred ----------hHHHHHHHHhcCCCh
Q 007929 321 ----------SSALLEMMIFHLPSP 335 (584)
Q Consensus 321 ----------~~~LLd~i~~~lPsP 335 (584)
++.|||+|++++|+|
T Consensus 243 ~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 243 FFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred EecccccCcCHHHHHHHHHHHCCCC
Confidence 799999999999998
No 30
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=3e-35 Score=297.89 Aligned_cols=255 Identities=25% Similarity=0.335 Sum_probs=210.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
+|++ +||+|+|||||+++|++.+|.+.+.+. .+++++|+.++|++|++|+......+.|.
T Consensus 1 ni~i---vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--------------- 62 (268)
T cd04170 1 NIAL---VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--------------- 62 (268)
T ss_pred CEEE---ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC---------------
Confidence 5778 999999999999999999998876542 23688999999999999999999999998
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHHH
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 167 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~~ 167 (584)
++++++||||||.+|..++..+++.+|++++|+|+..|...++..+|+++...++|.++|+||+|+..
T Consensus 63 -~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~----------- 130 (268)
T cd04170 63 -GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRER----------- 130 (268)
T ss_pred -CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCC-----------
Confidence 89999999999999999999999999999999999999999999999998888999999999999984
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCCC
Q 007929 168 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 247 (584)
Q Consensus 168 ~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~~ 247 (584)
.++++.+++++..++ . .+.|. ++|...+....+ .+|+...+++.|.+ ++
T Consensus 131 ~~~~~~~~~l~~~~~--------~-~~~~~--~ip~~~~~~~~~--------------~vd~~~~~~~~~~~------~~ 179 (268)
T cd04170 131 ADFDKTLAALQEAFG--------R-PVVPL--QLPIGEGDDFKG--------------VVDLLTEKAYIYSP------GA 179 (268)
T ss_pred CCHHHHHHHHHHHhC--------C-CeEEE--EecccCCCceeE--------------EEEcccCEEEEccC------CC
Confidence 356667777777762 2 23343 677666543222 25666555555522 11
Q ss_pred eeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhccc------
Q 007929 248 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWLPA------ 320 (584)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~P~------ 320 (584)
..... .+|..+.+.+.+.+.+|+|.+++.||++||+||++ .+++++|+. .+|++++.. .++|+
T Consensus 180 ~~~~~-----~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~--~~~~~~~l~---~~l~~~~~~~~~~pv~~gSa~ 249 (268)
T cd04170 180 PSEEI-----EIPEELKEEVAEAREELLEAVAETDDELMEKYLEG--GELTEEELH---AGLRRALRAGLLVPVLCGSAL 249 (268)
T ss_pred cceec-----cCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEEeeCC
Confidence 11212 36888888899999999999999999999999998 899999998 788888774 78896
Q ss_pred ----hHHHHHHHHhcCCCh
Q 007929 321 ----SSALLEMMIFHLPSP 335 (584)
Q Consensus 321 ----~~~LLd~i~~~lPsP 335 (584)
++.|||++.+++|+|
T Consensus 250 ~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 250 TNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCcCHHHHHHHHHHhCCCC
Confidence 799999999999998
No 31
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=4.5e-34 Score=305.26 Aligned_cols=294 Identities=21% Similarity=0.335 Sum_probs=219.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
..+++|++ +||+|||||||+++|++..+.+..........+|+.++|++||+|++++...+.++
T Consensus 10 ~~~~~i~i---~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~------------- 73 (409)
T CHL00071 10 KPHVNIGT---IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE------------- 73 (409)
T ss_pred CCeEEEEE---ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC-------------
Confidence 56789999 99999999999999999988776443333457999999999999999988877766
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCccccccccCCHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~~~~~~~~~~ 164 (584)
+..++|+|||||.+|...+.++++.+|+|++|||+.+|++.||++++..+...++| +|+++||||+.. .+
T Consensus 74 ---~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~------~~ 144 (409)
T CHL00071 74 ---NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD------DE 144 (409)
T ss_pred ---CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC------HH
Confidence 78999999999999999999999999999999999999999999999999889999 568999999973 22
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
..++.+.++++..|..+... +. .. .+.+.|+..||.... .
T Consensus 145 ---~~~~~~~~~l~~~l~~~~~~--~~--~~----~ii~~Sa~~g~n~~~-----------------------------~ 184 (409)
T CHL00071 145 ---ELLELVELEVRELLSKYDFP--GD--DI----PIVSGSALLALEALT-----------------------------E 184 (409)
T ss_pred ---HHHHHHHHHHHHHHHHhCCC--CC--cc----eEEEcchhhcccccc-----------------------------c
Confidence 23444455666666543211 00 11 244557776664210 0
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHH
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~L 324 (584)
..+ +. .. ...|+.....|
T Consensus 185 ~~~-~~-----------------------------~~--------------------------------~~~w~~~~~~l 202 (409)
T CHL00071 185 NPK-IK-----------------------------RG--------------------------------ENKWVDKIYNL 202 (409)
T ss_pred Ccc-cc-----------------------------cc--------------------------------CCchhhhHHHH
Confidence 000 00 00 00222224678
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEc
Q 007929 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (584)
Q Consensus 325 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~ 404 (584)
|+++.+++|+|.. +.++||.++|++++..++.|. ++++||+||+|+.||.|.++
T Consensus 203 l~~l~~~~~~p~~-------------------------~~~~p~r~~I~~v~~~~g~G~-Vv~G~V~sG~l~~Gd~v~i~ 256 (409)
T CHL00071 203 MDAVDSYIPTPER-------------------------DTDKPFLMAIEDVFSITGRGT-VATGRIERGTVKVGDTVEIV 256 (409)
T ss_pred HHHHHhhCCCCCC-------------------------CCCCCEEEEEEEEEEeCCCeE-EEEEEEecCEEeeCCEEEEe
Confidence 9999998888842 346899999999999999998 99999999999999999887
Q ss_pred CCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--ccCcccccce-EeccCC
Q 007929 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (584)
Q Consensus 405 ~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--gl~~~~~~tg-Tl~~~~ 463 (584)
+.+. +.. .+|.+|... ..++++|.|||+|++. +++..-.+.| +|++++
T Consensus 257 p~~~--~~~-----~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 257 GLRE--TKT-----TTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred eCCC--CcE-----EEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 5421 111 478887743 2578999999999764 6553324678 787764
No 32
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-33 Score=285.89 Aligned_cols=285 Identities=26% Similarity=0.363 Sum_probs=214.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCcccccc----------CC-----CeeeeCChhhHhhhccceecceEEEE
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRQDEAERGITIKSTGISLY 70 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~r~~Ti~~~~~~~~ 70 (584)
.-++++++ +||+|||||||+.+|||..|.++.+. .| ..|++|..++|++||+|++.+..+|.
T Consensus 5 Kph~nl~~---iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe 81 (428)
T COG5256 5 KPHLNLVF---IGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE 81 (428)
T ss_pred CCceEEEE---EcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence 35689999 99999999999999999999998741 22 36899999999999999999999998
Q ss_pred eecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCC
Q 007929 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (584)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-------~~~~t~~~l~~~~~~~~ 143 (584)
.. .+.++|+|||||.||..+++.+.++||.|||||||..| +..||++++-.+...++
T Consensus 82 t~----------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi 145 (428)
T COG5256 82 TD----------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI 145 (428)
T ss_pred cC----------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC
Confidence 77 78899999999999999999999999999999999998 99999999999888999
Q ss_pred c-eEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhh
Q 007929 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (584)
Q Consensus 144 p-~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~ 222 (584)
. .||++||||... ++ .++|+++..++...+..++..+. +++|.|. ||..|-
T Consensus 146 ~~lIVavNKMD~v~----wd----e~rf~ei~~~v~~l~k~~G~~~~-~v~FIPi-------Sg~~G~------------ 197 (428)
T COG5256 146 KQLIVAVNKMDLVS----WD----EERFEEIVSEVSKLLKMVGYNPK-DVPFIPI-------SGFKGD------------ 197 (428)
T ss_pred ceEEEEEEcccccc----cC----HHHHHHHHHHHHHHHHHcCCCcc-CCeEEec-------ccccCC------------
Confidence 8 668999999983 33 37999999999987655543311 2344442 443322
Q ss_pred hhcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHH
Q 007929 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (584)
Q Consensus 223 ~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~ 302 (584)
|..+... . .+|.++
T Consensus 198 -----------------Nl~~~s~---------------------~------------------~pWY~G---------- 211 (428)
T COG5256 198 -----------------NLTKKSE---------------------N------------------MPWYKG---------- 211 (428)
T ss_pred -----------------cccccCc---------------------C------------------CcCccC----------
Confidence 1111110 0 011111
Q ss_pred HHhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCC
Q 007929 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (584)
Q Consensus 303 ~~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g 382 (584)
..||+++- .+..|.. .-+.||+.-|..++.....|
T Consensus 212 -------------------pTLleaLd-~~~~p~~-------------------------~~d~Plr~pI~~v~~i~~~g 246 (428)
T COG5256 212 -------------------PTLLEALD-QLEPPER-------------------------PLDKPLRLPIQDVYSISGIG 246 (428)
T ss_pred -------------------ChHHHHHh-ccCCCCC-------------------------CCCCCeEeEeeeEEEecCCc
Confidence 23455554 4455531 23689999999998867778
Q ss_pred ceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE--EccCcccccce-Ee
Q 007929 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TL 459 (584)
Q Consensus 383 ~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav--~gl~~~~~~tg-Tl 459 (584)
. +.++||.||.|++||.|++.+.+ .. ..|+.+. ...++++.+.+||.|.+ .|++..-.+.| .+
T Consensus 247 t-v~vGrVEsG~i~~g~~v~~~p~~----~~-----~evksie----~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~ 312 (428)
T COG5256 247 T-VPVGRVESGVIKPGQKVTFMPAG----VV-----GEVKSIE----MHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVI 312 (428)
T ss_pred e-EEEEEEeeeeeccCCEEEEecCc----ce-----EEEeeee----ecccccccCCCCCeEEEEecCCchhccCCccEe
Confidence 8 99999999999999999987653 12 2566666 33689999999999877 35443223667 44
Q ss_pred ccC
Q 007929 460 TNE 462 (584)
Q Consensus 460 ~~~ 462 (584)
++.
T Consensus 313 ~~~ 315 (428)
T COG5256 313 GHS 315 (428)
T ss_pred ccC
Confidence 444
No 33
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.8e-33 Score=299.23 Aligned_cols=284 Identities=23% Similarity=0.334 Sum_probs=207.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
..+++|++ +||+|||||||+++|+...+...+......+.+|..++|++||+|++++...+.++
T Consensus 10 k~~~ni~i---~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~------------- 73 (394)
T PRK12736 10 KPHVNIGT---IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE------------- 73 (394)
T ss_pred CCeeEEEE---EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC-------------
Confidence 46789999 99999999999999986543221111111246999999999999999987776655
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCccccccccCCHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~~~~~~~~~~ 164 (584)
++.++|||||||.+|..++.++++.+|++++|||+.+|++.||+++|..+...++| +|+++||||+.. .+
T Consensus 74 ---~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~------~~ 144 (394)
T PRK12736 74 ---KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD------DE 144 (394)
T ss_pred ---CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc------hH
Confidence 78999999999999999999999999999999999999999999999999889999 568999999862 22
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
..++.+.++++..+..+... +....+...|+..|..
T Consensus 145 ---~~~~~i~~~i~~~l~~~~~~--------~~~~~ii~vSa~~g~~--------------------------------- 180 (394)
T PRK12736 145 ---ELLELVEMEVRELLSEYDFP--------GDDIPVIRGSALKALE--------------------------------- 180 (394)
T ss_pred ---HHHHHHHHHHHHHHHHhCCC--------cCCccEEEeecccccc---------------------------------
Confidence 12333444666666433211 1000122334332210
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHH
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~L 324 (584)
. . ..|++....|
T Consensus 181 --~--------~----------------------------------------------------------~~~~~~i~~L 192 (394)
T PRK12736 181 --G--------D----------------------------------------------------------PKWEDAIMEL 192 (394)
T ss_pred --C--------C----------------------------------------------------------CcchhhHHHH
Confidence 0 0 0122334678
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEc
Q 007929 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (584)
Q Consensus 325 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~ 404 (584)
++++.+++|+|.. +.++||.++|++++..++.|. ++++||++|+|+.||.|+++
T Consensus 193 l~~l~~~lp~~~~-------------------------~~~~p~r~~I~~~~~~~g~G~-Vv~G~v~~G~l~~gd~v~i~ 246 (394)
T PRK12736 193 MDAVDEYIPTPER-------------------------DTDKPFLMPVEDVFTITGRGT-VVTGRVERGTVKVGDEVEIV 246 (394)
T ss_pred HHHHHHhCCCCCC-------------------------CCCCCeEEEEEEEEecCCcEE-EEEEEEeecEEecCCEEEEe
Confidence 8899999997742 346899999999999999998 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE--EccCcccccce-EeccCC
Q 007929 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 405 ~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav--~gl~~~~~~tg-Tl~~~~ 463 (584)
+.+. ..+ .+|.+|.. ...++++|.|||++++ .|++..-.+.| +||+++
T Consensus 247 p~~~--~~~-----~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 247 GIKE--TQK-----TVVTGVEM----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred cCCC--CeE-----EEEEEEEE----CCEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 6421 112 47887774 2468899999999976 67653224677 788764
No 34
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.9e-33 Score=301.89 Aligned_cols=288 Identities=22% Similarity=0.309 Sum_probs=212.8
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCcccccc---------CC------CeeeeCChhhHhhhccceecceEEE
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV---------AG------DVRMTDTRQDEAERGITIKSTGISL 69 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~---------~g------~~~~~D~~~~E~~r~~Ti~~~~~~~ 69 (584)
...+++|++ +||+|||||||+++||+.+|.+++.+ .+ ..+++|..++|++||+|++.+...+
T Consensus 4 ~k~~~ni~i---~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~ 80 (447)
T PLN00043 4 EKVHINIVV---IGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF 80 (447)
T ss_pred CCceEEEEE---EecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe
Confidence 456789999 99999999999999999999887643 11 1478999999999999999998888
Q ss_pred EeecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcC
Q 007929 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGER 142 (584)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-------~~~t~~~l~~~~~~~ 142 (584)
.|. ++.+||||||||.+|..++..+++.+|+||+|||+.+|. ..||+++|..+...+
T Consensus 81 ~~~----------------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~g 144 (447)
T PLN00043 81 ETT----------------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG 144 (447)
T ss_pred cCC----------------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcC
Confidence 887 899999999999999999999999999999999999983 279999999988899
Q ss_pred Cce-EEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHh
Q 007929 143 IRP-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (584)
Q Consensus 143 ~p~-ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y 221 (584)
+|. |+++||||+.. .++...+|.+++++++..++.++..+ ..+.+.| .|+..|.+..
T Consensus 145 i~~iIV~vNKmD~~~------~~~~~~~~~~i~~ei~~~l~~~g~~~-~~~~~ip-------iSa~~G~ni~-------- 202 (447)
T PLN00043 145 VKQMICCCNKMDATT------PKYSKARYDEIVKEVSSYLKKVGYNP-DKIPFVP-------ISGFEGDNMI-------- 202 (447)
T ss_pred CCcEEEEEEcccCCc------hhhhHHHHHHHHHHHHHHHHHcCCCc-ccceEEE-------Eecccccccc--------
Confidence 975 67899999862 23445789999999999886542110 0112222 2454443210
Q ss_pred hhhcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHH
Q 007929 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (584)
Q Consensus 222 ~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e 301 (584)
+.... .
T Consensus 203 ---------------------~~~~~---------------------------------------~-------------- 208 (447)
T PLN00043 203 ---------------------ERSTN---------------------------------------L-------------- 208 (447)
T ss_pred ---------------------ccccC---------------------------------------C--------------
Confidence 00000 0
Q ss_pred HHHhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCC
Q 007929 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (584)
Q Consensus 302 ~~~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~ 381 (584)
.|+- ...||+++.+ +|.|.. +.++||...|..++..++.
T Consensus 209 --------------~Wy~-g~tLl~~l~~-i~~p~~-------------------------~~~~plr~~I~~v~~~~g~ 247 (447)
T PLN00043 209 --------------DWYK-GPTLLEALDQ-INEPKR-------------------------PSDKPLRLPLQDVYKIGGI 247 (447)
T ss_pred --------------cccc-hHHHHHHHhh-cCCCcc-------------------------ccCCCcEEEEEEEEEeCCc
Confidence 0110 0345666644 444421 2357999999999988888
Q ss_pred CceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--ccCcccccce-E
Q 007929 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-T 458 (584)
Q Consensus 382 g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--gl~~~~~~tg-T 458 (584)
|. +..|||.+|+|++||.|.+.+. +.. .+|..|.. ...++++|.|||.|++. +++..-...| .
T Consensus 248 G~-vv~G~V~~G~l~~Gd~v~~~P~----~~~-----~~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~v 313 (447)
T PLN00043 248 GT-VPVGRVETGVIKPGMVVTFGPT----GLT-----TEVKSVEM----HHESLQEALPGDNVGFNVKNVAVKDLKRGYV 313 (447)
T ss_pred EE-EEEEEEECCEEeeCCEEEEcCC----CCE-----EEEEEEEE----CCeEeCEecCCCeEEEEECCCCHhhCCCccE
Confidence 88 9999999999999999997643 222 47777763 35789999999998884 4422223567 6
Q ss_pred eccC
Q 007929 459 LTNE 462 (584)
Q Consensus 459 l~~~ 462 (584)
|++.
T Consensus 314 l~~~ 317 (447)
T PLN00043 314 ASNS 317 (447)
T ss_pred EccC
Confidence 7764
No 35
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2.5e-33 Score=301.28 Aligned_cols=288 Identities=22% Similarity=0.279 Sum_probs=211.2
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCcccccc------------CC---CeeeeCChhhHhhhccceecceEEE
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV------------AG---DVRMTDTRQDEAERGITIKSTGISL 69 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~------------~g---~~~~~D~~~~E~~r~~Ti~~~~~~~ 69 (584)
...+++|++ +||+|||||||+++||+.+|.+++.+ .| ..+++|..++|++||+|++.+...+
T Consensus 4 ~k~~~nv~i---~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~ 80 (446)
T PTZ00141 4 EKTHINLVV---IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (446)
T ss_pred CCceEEEEE---EecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence 346789999 99999999999999999999887642 22 1357999999999999999999888
Q ss_pred EeecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcC
Q 007929 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGER 142 (584)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-------~~~t~~~l~~~~~~~ 142 (584)
.|+ ++.++|||||||.+|..++..+++.+|+||+|||+.+|+ +.||+++|..+...+
T Consensus 81 ~~~----------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~g 144 (446)
T PTZ00141 81 ETP----------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLG 144 (446)
T ss_pred ccC----------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcC
Confidence 887 899999999999999999999999999999999999997 589999999999999
Q ss_pred Cce-EEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHh
Q 007929 143 IRP-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (584)
Q Consensus 143 ~p~-ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y 221 (584)
+|. |+++||||+.. .++..++|.++.++++..|...+... ..+++. ..|+..|.+..
T Consensus 145 i~~iiv~vNKmD~~~------~~~~~~~~~~i~~~i~~~l~~~g~~~-~~~~~i-------piSa~~g~ni~-------- 202 (446)
T PTZ00141 145 VKQMIVCINKMDDKT------VNYSQERYDEIKKEVSAYLKKVGYNP-EKVPFI-------PISGWQGDNMI-------- 202 (446)
T ss_pred CCeEEEEEEcccccc------chhhHHHHHHHHHHHHHHHHhcCCCc-ccceEE-------EeecccCCCcc--------
Confidence 995 58999999652 12223688999999988885432110 011222 22444332210
Q ss_pred hhhcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHH
Q 007929 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (584)
Q Consensus 222 ~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e 301 (584)
+... . ..|.++
T Consensus 203 ---------------------~~~~---------------~------------------------~~Wy~G--------- 213 (446)
T PTZ00141 203 ---------------------EKSD---------------N------------------------MPWYKG--------- 213 (446)
T ss_pred ---------------------cCCC---------------C------------------------Ccccch---------
Confidence 0000 0 000111
Q ss_pred HHHhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCC
Q 007929 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (584)
Q Consensus 302 ~~~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~ 381 (584)
..|++++.+. +.|.. +.+.||...|..++..+..
T Consensus 214 --------------------~tL~~~l~~~-~~~~~-------------------------~~~~p~r~~I~~v~~v~g~ 247 (446)
T PTZ00141 214 --------------------PTLLEALDTL-EPPKR-------------------------PVDKPLRLPLQDVYKIGGI 247 (446)
T ss_pred --------------------HHHHHHHhCC-CCCCc-------------------------CCCCCeEEEEEEEEecCCc
Confidence 3456665443 44421 2357999999999988888
Q ss_pred CceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--ccCcccccce-E
Q 007929 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-T 458 (584)
Q Consensus 382 g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--gl~~~~~~tg-T 458 (584)
|. +..+||.+|+|+.||.|.+++.+ .. .+|.+|.. ...++++|.|||.|++. +++..-...| .
T Consensus 248 Gt-vv~G~V~~G~l~~Gd~v~i~P~~----~~-----~~VksI~~----~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~v 313 (446)
T PTZ00141 248 GT-VPVGRVETGILKPGMVVTFAPSG----VT-----TEVKSVEM----HHEQLAEAVPGDNVGFNVKNVSVKDIKRGYV 313 (446)
T ss_pred eE-EEEEEEEcceEecCCEEEEccCC----cE-----EEEEEEEe----cCcccCEECCCCEEEEEECCCCHHHcCCceE
Confidence 88 99999999999999999987542 22 47777763 34789999999999884 3322223567 6
Q ss_pred eccC
Q 007929 459 LTNE 462 (584)
Q Consensus 459 l~~~ 462 (584)
|++.
T Consensus 314 l~~~ 317 (446)
T PTZ00141 314 ASDS 317 (446)
T ss_pred EecC
Confidence 7765
No 36
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=3.3e-32 Score=289.91 Aligned_cols=284 Identities=20% Similarity=0.335 Sum_probs=205.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
..+++|++ +||+|||||||+++|++......+......+.+|..++|++||+|++++...+.+.
T Consensus 10 ~~~~~i~i---~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~------------- 73 (394)
T TIGR00485 10 KPHVNIGT---IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE------------- 73 (394)
T ss_pred CceEEEEE---EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC-------------
Confidence 46789999 99999999999999986533221111112357999999999999999887776655
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccccccccCCHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~~~~~~~~~~ 164 (584)
++.++|||||||.+|..++.++++.+|++++|||+.+|+..||.+++..+...++|.+ +++||||+.. .+
T Consensus 74 ---~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~------~~ 144 (394)
T TIGR00485 74 ---NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DE 144 (394)
T ss_pred ---CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC------HH
Confidence 7889999999999999999999999999999999999999999999999988999976 6899999873 22
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
..++.+.++++..+..+... +....+...|+..|..
T Consensus 145 ---~~~~~~~~~i~~~l~~~~~~--------~~~~~ii~vSa~~g~~--------------------------------- 180 (394)
T TIGR00485 145 ---ELLELVEMEVRELLSEYDFP--------GDDTPIIRGSALKALE--------------------------------- 180 (394)
T ss_pred ---HHHHHHHHHHHHHHHhcCCC--------ccCccEEECccccccc---------------------------------
Confidence 23334445666666433211 1000122233332110
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHH
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~L 324 (584)
+ +. .|......|
T Consensus 181 ----------g--------------------------~~--------------------------------~~~~~~~~l 192 (394)
T TIGR00485 181 ----------G--------------------------DA--------------------------------EWEAKILEL 192 (394)
T ss_pred ----------c--------------------------CC--------------------------------chhHhHHHH
Confidence 0 00 000012457
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEc
Q 007929 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (584)
Q Consensus 325 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~ 404 (584)
|+++.+.+|.|.. +.++||.++|++++..++.|. +.++||.+|+|++||.|++.
T Consensus 193 l~~l~~~~~~~~~-------------------------~~~~p~r~~V~~vf~~~g~G~-Vv~G~v~~G~l~~gd~v~i~ 246 (394)
T TIGR00485 193 MDAVDEYIPTPER-------------------------ETDKPFLMPIEDVFSITGRGT-VVTGRVERGIVKVGEEVEIV 246 (394)
T ss_pred HHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEEeeEEeCCCEEEEe
Confidence 8888888887742 345899999999999999998 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE--EccCcccccce-EeccCC
Q 007929 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 405 ~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav--~gl~~~~~~tg-Tl~~~~ 463 (584)
+.. .+.+ .+|..|.. ...++++|.|||.|++ .+++..-.+.| +|++++
T Consensus 247 p~~--~~~~-----~~VksI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 247 GLK--DTRK-----TTVTGVEM----FRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred cCC--CCcE-----EEEEEEEE----CCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 532 1112 46887774 2477899999999977 56543223667 787764
No 37
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=3e-32 Score=293.72 Aligned_cols=295 Identities=22% Similarity=0.331 Sum_probs=215.9
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
...+++|++ +||+|||||||+++|++..+.+..........+|..++|++||+|++.....+.++
T Consensus 78 ~k~~~ni~i---iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~------------ 142 (478)
T PLN03126 78 KKPHVNIGT---IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE------------ 142 (478)
T ss_pred cCCeeEEEE---ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC------------
Confidence 456789999 99999999999999999998876654444568999999999999999998888877
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCccccccccCCH
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDG 163 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~~~~~~~~~ 163 (584)
+++++|||||||.+|..++..+++.+|+|++|||+.+|+..||+++|..+...++| +|+++||||+.. .
T Consensus 143 ----~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~------~ 212 (478)
T PLN03126 143 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------D 212 (478)
T ss_pred ----CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC------H
Confidence 78999999999999999999999999999999999999999999999999999999 568999999862 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccC
Q 007929 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (584)
Q Consensus 164 ~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~ 243 (584)
+ ..++.+.++++..|..++.+. ..++ +...|+..|+.... .
T Consensus 213 ~---~~~~~i~~~i~~~l~~~g~~~-~~~~-------~vp~Sa~~g~n~~~-----------------------~----- 253 (478)
T PLN03126 213 E---ELLELVELEVRELLSSYEFPG-DDIP-------IISGSALLALEALM-----------------------E----- 253 (478)
T ss_pred H---HHHHHHHHHHHHHHHhcCCCc-Ccce-------EEEEEccccccccc-----------------------c-----
Confidence 3 234555567777775432110 0111 22345555542100 0
Q ss_pred cCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHH
Q 007929 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (584)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~ 323 (584)
..... ..+. .|+.....
T Consensus 254 --~~~~~-----------------------------~g~~--------------------------------~wy~~i~~ 270 (478)
T PLN03126 254 --NPNIK-----------------------------RGDN--------------------------------KWVDKIYE 270 (478)
T ss_pred --ccccc-----------------------------cCCC--------------------------------chhhhHHH
Confidence 00000 0000 11111245
Q ss_pred HHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEE
Q 007929 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (584)
Q Consensus 324 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v 403 (584)
||+++.++.|.|.. +.+.||..+|..++..++.|. +..+||.+|+|++||.|++
T Consensus 271 Ll~~l~~~~~~p~r-------------------------~~~~p~r~~I~~vf~v~g~Gt-Vv~G~V~sG~i~~Gd~v~i 324 (478)
T PLN03126 271 LMDAVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRVERGTVKVGETVDI 324 (478)
T ss_pred HHHHHHHhCCCCCC-------------------------ccccceeeEEEEEEEeCCceE-EEEEEEEcCeEecCCEEEE
Confidence 77888777776632 235799999999998888898 9999999999999999998
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE--EccCcccccce-EeccCC
Q 007929 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 404 ~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav--~gl~~~~~~tg-Tl~~~~ 463 (584)
.+.+ ...+ .+|..|... ..++++|.|||.|++ .+++..-...| .|++++
T Consensus 325 ~p~~--~~~~-----~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 325 VGLR--ETRS-----TTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred ecCC--CceE-----EEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecCC
Confidence 7431 1111 467777633 478999999999988 45544323567 777764
No 38
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.1e-32 Score=289.87 Aligned_cols=286 Identities=20% Similarity=0.297 Sum_probs=209.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
..+++|++ +||+|||||||+++|++..+...+......+.+|..++|++||+|++++...+.++
T Consensus 10 ~~~~~i~i---iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~------------- 73 (396)
T PRK12735 10 KPHVNVGT---IGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA------------- 73 (396)
T ss_pred CCeEEEEE---ECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC-------------
Confidence 35688989 99999999999999998654222111112357999999999999999987777665
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccccccccCCHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~~~~~~~~~~ 164 (584)
+..++|||||||.+|..++.+++..+|+|++|||+.+|+..||++++..+...++|.+ +++||||+.. .+
T Consensus 74 ---~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~------~~ 144 (396)
T PRK12735 74 ---NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DE 144 (396)
T ss_pred ---CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc------hH
Confidence 6889999999999999999999999999999999999999999999999888899976 5899999962 12
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
..++.+.++++..+..+... +.+..+...|+..||...
T Consensus 145 ---~~~~~~~~ei~~~l~~~~~~--------~~~~~ii~~Sa~~g~n~~------------------------------- 182 (396)
T PRK12735 145 ---ELLELVEMEVRELLSKYDFP--------GDDTPIIRGSALKALEGD------------------------------- 182 (396)
T ss_pred ---HHHHHHHHHHHHHHHHcCCC--------cCceeEEecchhccccCC-------------------------------
Confidence 23344445666666543211 100123334554443200
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHH
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~L 324 (584)
.. ..|++....|
T Consensus 183 -~~-------------------------------------------------------------------~~w~~~~~~L 194 (396)
T PRK12735 183 -DD-------------------------------------------------------------------EEWEAKILEL 194 (396)
T ss_pred -CC-------------------------------------------------------------------CcccccHHHH
Confidence 00 0122223678
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEc
Q 007929 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (584)
Q Consensus 325 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~ 404 (584)
|+++.+.+|+|.. +.++||.++|..++..++.|. +..+||.+|+|++||.|+++
T Consensus 195 l~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~Gt-vv~G~v~~G~i~~gd~v~i~ 248 (396)
T PRK12735 195 MDAVDSYIPEPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIVKVGDEVEIV 248 (396)
T ss_pred HHHHHhcCCCCCc-------------------------cCCCCeEEEEEEEEecCCceE-EEEEEEEecEEeCCCEEEEe
Confidence 8889999997742 346899999999998888898 99999999999999999988
Q ss_pred CCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE--EccCcccccce-EeccCC
Q 007929 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 405 ~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav--~gl~~~~~~tg-Tl~~~~ 463 (584)
+.+ ...+ .+|..|.. ...++++|.|||.+++ .+++..-...| .||+++
T Consensus 249 p~~--~~~~-----~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 249 GIK--ETQK-----TTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred cCC--CCeE-----EEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 642 1112 46777763 3478999999999988 46644334667 788764
No 39
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.1e-31 Score=285.48 Aligned_cols=286 Identities=20% Similarity=0.303 Sum_probs=207.4
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
..+++|++ +||+|||||||+++|++......+......+.+|..++|++||+|++++...+.++
T Consensus 10 ~~~~ni~i---iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~------------- 73 (396)
T PRK00049 10 KPHVNVGT---IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE------------- 73 (396)
T ss_pred CCEEEEEE---EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC-------------
Confidence 46789999 99999999999999998543221111112247899999999999999987776655
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccccccccCCHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~~~~~~~~~~ 164 (584)
++.++|+|||||.+|..++..++..+|++++|||+.+|++.||+++|..+...++|.+ +++||||+.. .+
T Consensus 74 ---~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~------~~ 144 (396)
T PRK00049 74 ---KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DE 144 (396)
T ss_pred ---CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc------hH
Confidence 7899999999999999999999999999999999999999999999999988999976 6899999962 22
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
..++.+.++++..|..++.. +....+...|+..|+..+
T Consensus 145 ---~~~~~~~~~i~~~l~~~~~~--------~~~~~iv~iSa~~g~~~~------------------------------- 182 (396)
T PRK00049 145 ---ELLELVEMEVRELLSKYDFP--------GDDTPIIRGSALKALEGD------------------------------- 182 (396)
T ss_pred ---HHHHHHHHHHHHHHHhcCCC--------ccCCcEEEeecccccCCC-------------------------------
Confidence 23444555677776433211 110112223444332100
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHH
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~L 324 (584)
.. . .|+.....|
T Consensus 183 ~~----------------------------------------~----------------------------~w~~~~~~l 194 (396)
T PRK00049 183 DD----------------------------------------E----------------------------EWEKKILEL 194 (396)
T ss_pred Cc----------------------------------------c----------------------------cccccHHHH
Confidence 00 0 111123568
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEc
Q 007929 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (584)
Q Consensus 325 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~ 404 (584)
|+++.+++|+|.. +.++||.++|...+..+..|. +..+||.+|+|++||.|.++
T Consensus 195 l~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~G~-Vv~G~v~~G~i~~gd~v~i~ 248 (396)
T PRK00049 195 MDAVDSYIPTPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIV 248 (396)
T ss_pred HHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEeeeEEecCCEEEEe
Confidence 8888888987742 235899999999998888898 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE--EccCcccccce-EeccCC
Q 007929 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 405 ~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav--~gl~~~~~~tg-Tl~~~~ 463 (584)
+... +.+ .+|..|... ..++++|.|||.|++ .+++..-...| .||+++
T Consensus 249 p~~~--~~~-----~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 249 GIRD--TQK-----TTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred ecCC--Cce-----EEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 5421 122 467777633 468999999999988 45543223567 777754
No 40
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=4e-31 Score=297.37 Aligned_cols=304 Identities=17% Similarity=0.222 Sum_probs=217.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.|...|+| +||+|||||||+++|.... + . .+..+|+|+......+.|.
T Consensus 288 ~R~pvV~I---mGhvd~GKTSLl~~Lr~~~--v----------~----~~e~~GIT~~iga~~v~~~------------- 335 (787)
T PRK05306 288 PRPPVVTI---MGHVDHGKTSLLDAIRKTN--V----------A----AGEAGGITQHIGAYQVETN------------- 335 (787)
T ss_pred cCCCEEEE---ECCCCCCHHHHHHHHHhCC--c----------c----ccccCceeeeccEEEEEEC-------------
Confidence 46678999 9999999999999994311 1 0 1124678988888888887
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 165 (584)
++.|+|||||||.+|...+.++++.+|++|||||+.+|+..||.++|..+...++|+|+++||||+.. .++
T Consensus 336 ---~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~----a~~-- 406 (787)
T PRK05306 336 ---GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG----ANP-- 406 (787)
T ss_pred ---CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc----cCH--
Confidence 78999999999999999999999999999999999999999999999998889999999999999973 222
Q ss_pred HHHHHHHHHHHHHHH--H-hhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCccc
Q 007929 166 AYQTFQKVIENANVI--M-ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 242 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~--l-~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~ 242 (584)
.++..++... + ..|+ +.++ +...|+..|.+.
T Consensus 407 -----e~V~~eL~~~~~~~e~~g----~~vp-------~vpvSAktG~GI------------------------------ 440 (787)
T PRK05306 407 -----DRVKQELSEYGLVPEEWG----GDTI-------FVPVSAKTGEGI------------------------------ 440 (787)
T ss_pred -----HHHHHHHHHhcccHHHhC----CCce-------EEEEeCCCCCCc------------------------------
Confidence 2222222211 0 0000 0111 111233332211
Q ss_pred CcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchH
Q 007929 243 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASS 322 (584)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~ 322 (584)
.
T Consensus 441 -------------------------------------------------------------------------------~ 441 (787)
T PRK05306 441 -------------------------------------------------------------------------------D 441 (787)
T ss_pred -------------------------------------------------------------------------------h
Confidence 1
Q ss_pred HHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEE
Q 007929 323 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVR 402 (584)
Q Consensus 323 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~ 402 (584)
.|++++... + +.. ...+++++|+.++||+++.+++.|. ++++||++|+|+.||.|+
T Consensus 442 eLle~I~~~--~--e~~-------------------~l~~~~~~~~~g~V~es~~dkg~G~-v~~v~V~sGtLk~Gd~vv 497 (787)
T PRK05306 442 ELLEAILLQ--A--EVL-------------------ELKANPDRPARGTVIEAKLDKGRGP-VATVLVQNGTLKVGDIVV 497 (787)
T ss_pred HHHHhhhhh--h--hhh-------------------hcccCCCCCcEEEEEEEEEcCCCeE-EEEEEEecCeEecCCEEE
Confidence 111111110 0 000 0012567899999999999999998 999999999999999998
Q ss_pred EcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCC----------------
Q 007929 403 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV---------------- 465 (584)
Q Consensus 403 v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~---------------- 465 (584)
+. + +.++++.+.+....++++|.|||+|+|.||+++ ..+| ||+...+.
T Consensus 498 ~g-~-------------~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~-p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~ 562 (787)
T PRK05306 498 AG-T-------------TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGV-PQAGDEFVVVEDEKKAREIAEYRQEKARE 562 (787)
T ss_pred EC-C-------------cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 42 1 456778888888889999999999999999885 3577 77632100
Q ss_pred ------Cccccccccc----CCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEE
Q 007929 466 ------DAHPIRAMKF----SVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM 514 (584)
Q Consensus 466 ------~~~~~~~~~~----~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~ 514 (584)
....+..+.. +..+.+.+.|++...+..+.|..+|.+|..+++.+.+-.
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~~ 621 (787)
T PRK05306 563 KKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIH 621 (787)
T ss_pred HHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEEe
Confidence 0011222211 111368999999999999999999999999999999855
No 41
>PLN03127 Elongation factor Tu; Provisional
Probab=99.98 E-value=9e-31 Score=280.99 Aligned_cols=286 Identities=21% Similarity=0.296 Sum_probs=202.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
..+++|++ +||+|||||||+++|........+........+|..++|++||+|++++...+.++
T Consensus 59 k~~~ni~i---iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~------------- 122 (447)
T PLN03127 59 KPHVNVGT---IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA------------- 122 (447)
T ss_pred CceEEEEE---ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC-------------
Confidence 46789999 99999999999999964321111111111236899999999999999988877766
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccccccccCCHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~~~~~~~~~~ 164 (584)
+++++|||||||.+|..++..++..+|++++|||+.+|+..||++++..+...++|. |+++||||+.. .+
T Consensus 123 ---~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~------~~ 193 (447)
T PLN03127 123 ---KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD------DE 193 (447)
T ss_pred ---CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC------HH
Confidence 789999999999999999999999999999999999999999999999999999995 68999999972 22
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCcccc--ccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCccc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAF--SAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 242 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~--~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~ 242 (584)
+ .++.+.++++..+..+... + .++|+ .|+..++. |+
T Consensus 194 ~---~~~~i~~~i~~~l~~~~~~--------~--~~vpiip~Sa~sa~~--------------------------g~--- 231 (447)
T PLN03127 194 E---LLELVEMELRELLSFYKFP--------G--DEIPIIRGSALSALQ--------------------------GT--- 231 (447)
T ss_pred H---HHHHHHHHHHHHHHHhCCC--------C--CcceEEEeccceeec--------------------------CC---
Confidence 2 2222333555555322111 0 01222 23221110 00
Q ss_pred CcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchH
Q 007929 243 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASS 322 (584)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~ 322 (584)
+ .....+ ...
T Consensus 232 ----n-----------------------------------------------~~~~~~-------------------~i~ 241 (447)
T PLN03127 232 ----N-----------------------------------------------DEIGKN-------------------AIL 241 (447)
T ss_pred ----C-----------------------------------------------cccccc-------------------hHH
Confidence 0 000000 025
Q ss_pred HHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEE
Q 007929 323 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVR 402 (584)
Q Consensus 323 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~ 402 (584)
.|++++.+++|.|.. +.++||.+.|..++..+..|. +..+||.+|+|++||.|+
T Consensus 242 ~Ll~~l~~~lp~p~r-------------------------~~~~pfr~~I~~vf~v~g~Gt-VvtG~v~~G~i~~Gd~v~ 295 (447)
T PLN03127 242 KLMDAVDEYIPEPVR-------------------------VLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVE 295 (447)
T ss_pred HHHHHHHHhCCCCCc-------------------------ccccceEeeEEEEEEcCCceE-EEEEEEEccEEecCCEEE
Confidence 678888889997742 235799999999988888898 999999999999999999
Q ss_pred EcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE--EccCcccccce-EeccCC
Q 007929 403 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 403 v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav--~gl~~~~~~tg-Tl~~~~ 463 (584)
+++++.....+ .+|..|... ...+++|.|||.|++ .+++..-...| .||+++
T Consensus 296 i~p~~~~g~~~-----~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~ 350 (447)
T PLN03127 296 IVGLRPGGPLK-----TTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPG 350 (447)
T ss_pred EcccCCCCcEE-----EEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCC
Confidence 88653211112 477777644 357899999999987 45543334567 777754
No 42
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=8.1e-31 Score=282.40 Aligned_cols=286 Identities=23% Similarity=0.344 Sum_probs=209.4
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCcccccc----------CC-----CeeeeCChhhHhhhccceecceEEEE
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRQDEAERGITIKSTGISLY 70 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~r~~Ti~~~~~~~~ 70 (584)
..+++|++ +||+|||||||+++|++..|.+++.. .| +.+++|..++|++||+|++.....+.
T Consensus 4 k~~~~v~i---iGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 4 KPHLNLAV---IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCEEEEEE---ECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 45789999 99999999999999999999987651 12 35789999999999999999999888
Q ss_pred eecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCC--CCchhHHHHHHHHHhcCCc-eEE
Q 007929 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--GVCVQTETVLRQALGERIR-PVL 147 (584)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~--g~~~~t~~~l~~~~~~~~p-~iv 147 (584)
++ +++++|||||||.+|...+..+++.+|++++|||+.+ |+..++..++..+...++| +++
T Consensus 81 ~~----------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iiv 144 (425)
T PRK12317 81 TD----------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIV 144 (425)
T ss_pred cC----------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEE
Confidence 87 8999999999999999999999999999999999999 9999999999888777875 678
Q ss_pred EEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCC
Q 007929 148 TVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGV 227 (584)
Q Consensus 148 viNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~v 227 (584)
++||||+.. .+. ..+..+.++++..+..++. .+....+...|+..|.+..
T Consensus 145 viNK~Dl~~----~~~----~~~~~~~~~i~~~l~~~g~--------~~~~~~ii~iSA~~g~gi~-------------- 194 (425)
T PRK12317 145 AINKMDAVN----YDE----KRYEEVKEEVSKLLKMVGY--------KPDDIPFIPVSAFEGDNVV-------------- 194 (425)
T ss_pred EEEcccccc----ccH----HHHHHHHHHHHHHHHhhCC--------CcCcceEEEeecccCCCcc--------------
Confidence 999999972 111 3466667777766643321 1100112333555443210
Q ss_pred ChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHH
Q 007929 228 DESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGK 307 (584)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~ 307 (584)
. ... . -
T Consensus 195 -~--------------~~~---------------~------~-------------------------------------- 200 (425)
T PRK12317 195 -K--------------KSE---------------N------M-------------------------------------- 200 (425)
T ss_pred -c--------------ccc---------------C------C--------------------------------------
Confidence 0 000 0 0
Q ss_pred HHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEE
Q 007929 308 ALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAF 387 (584)
Q Consensus 308 ~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~ 387 (584)
.|+. -..|++++. .+|.|.. +.++||.+.|..++..+..|. +..
T Consensus 201 --------~wy~-g~~L~~~l~-~~~~~~~-------------------------~~~~p~r~~i~~~~~~~g~G~-vv~ 244 (425)
T PRK12317 201 --------PWYN-GPTLLEALD-NLKPPEK-------------------------PTDKPLRIPIQDVYSISGVGT-VPV 244 (425)
T ss_pred --------Cccc-HHHHHHHHh-cCCCCcc-------------------------ccCCCcEEEEEEEEeeCCCeE-EEE
Confidence 1111 034666653 4566631 235899999999998888888 999
Q ss_pred EEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--ccCcccccce-EeccCC
Q 007929 388 GRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (584)
Q Consensus 388 ~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--gl~~~~~~tg-Tl~~~~ 463 (584)
|||.+|+|+.||.|++.+.+ .. .+|.+|.. ...++++|.|||.|++. +++..-...| .|+++.
T Consensus 245 G~v~~G~v~~Gd~v~i~P~~----~~-----~~VksI~~----~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 245 GRVETGVLKVGDKVVFMPAG----VV-----GEVKSIEM----HHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred EEEeeccEecCCEEEECCCC----Ce-----EEEEEEEE----CCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 99999999999999987643 12 46777763 34789999999999873 4432223567 777654
No 43
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.97 E-value=4.3e-30 Score=274.21 Aligned_cols=146 Identities=28% Similarity=0.310 Sum_probs=124.6
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCcccccc----------CCC-------eeeeCChhhHhhhccceecceEEEEe
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRQDEAERGITIKSTGISLYY 71 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-------~~~~D~~~~E~~r~~Ti~~~~~~~~~ 71 (584)
++|++ +||+|||||||+++||+.+|.++++. .|. .|++|+.++|++||+|++++...+.|
T Consensus 1 ~~~~~---vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~ 77 (406)
T TIGR02034 1 LRFLT---CGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST 77 (406)
T ss_pred CeEEE---ECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc
Confidence 47888 99999999999999999999988732 232 46899999999999999999999988
Q ss_pred ecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEe
Q 007929 72 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVN 150 (584)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviN 150 (584)
+ +++++|||||||.+|..++..++..+|+||+|||+.+|++.||+++|..+...++| +++|+|
T Consensus 78 ~----------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviN 141 (406)
T TIGR02034 78 D----------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVN 141 (406)
T ss_pred C----------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEE
Confidence 7 78999999999999999999999999999999999999999999999998887887 567999
Q ss_pred cCccccccccCCHHHHHHHHHHHHHHHHHHH
Q 007929 151 KMDRCFLELQVDGEEAYQTFQKVIENANVIM 181 (584)
Q Consensus 151 K~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l 181 (584)
|||+.. .+. ..+.++.++++..+
T Consensus 142 K~D~~~----~~~----~~~~~i~~~~~~~~ 164 (406)
T TIGR02034 142 KMDLVD----YDE----EVFENIKKDYLAFA 164 (406)
T ss_pred eccccc----chH----HHHHHHHHHHHHHH
Confidence 999973 111 34555555555444
No 44
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.97 E-value=8.1e-30 Score=276.11 Aligned_cols=149 Identities=26% Similarity=0.277 Sum_probs=125.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCcccccc----------CC-------CeeeeCChhhHhhhccceecceEE
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AG-------DVRMTDTRQDEAERGITIKSTGIS 68 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g-------~~~~~D~~~~E~~r~~Ti~~~~~~ 68 (584)
..+++|+| +||+|||||||+++||+.+|.++++. .| ..+++|..++|++||+|++++...
T Consensus 25 ~~~~~i~i---iGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~ 101 (474)
T PRK05124 25 KSLLRFLT---CGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY 101 (474)
T ss_pred cCceEEEE---ECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence 46789999 99999999999999999999988631 23 136899999999999999999888
Q ss_pred EEeecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEE
Q 007929 69 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVL 147 (584)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~iv 147 (584)
+.|+ ++.++|||||||.+|..++..+++.+|+|++|||+.+|+..||++++..+...+++ +|+
T Consensus 102 ~~~~----------------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIv 165 (474)
T PRK05124 102 FSTE----------------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVV 165 (474)
T ss_pred eccC----------------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEE
Confidence 8877 78999999999999999999999999999999999999999999999888777765 568
Q ss_pred EEecCccccccccCCHHHHHHHHHHHHHHHHHHH
Q 007929 148 TVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM 181 (584)
Q Consensus 148 viNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l 181 (584)
++||||+.. .+. ..+.++.++++..+
T Consensus 166 vvNKiD~~~----~~~----~~~~~i~~~l~~~~ 191 (474)
T PRK05124 166 AVNKMDLVD----YSE----EVFERIREDYLTFA 191 (474)
T ss_pred EEEeecccc----chh----HHHHHHHHHHHHHH
Confidence 999999972 111 34555555555444
No 45
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.2e-30 Score=249.95 Aligned_cols=282 Identities=21% Similarity=0.324 Sum_probs=198.0
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++||.. +||+|||||||+.++-...........-...-.|..|+|++|||||+.+.+.++..
T Consensus 12 hVNigt---iGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~--------------- 73 (394)
T COG0050 12 HVNVGT---IGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA--------------- 73 (394)
T ss_pred eeEEEE---eccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC---------------
Confidence 455655 99999999999999843221111000111123677899999999999998877766
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccccccccCCHHHH
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGEEA 166 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~~ 166 (584)
..++..+|||||.||.+.|+.+..+.|+|||||+|.+|.++||++++..+.+.++|.| +|+||+|+.. ++
T Consensus 74 -~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd-----d~--- 144 (394)
T COG0050 74 -NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD-----DE--- 144 (394)
T ss_pred -CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC-----cH---
Confidence 7889999999999999999999999999999999999999999999999999999955 8999999984 12
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCC
Q 007929 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (584)
Q Consensus 167 ~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~ 246 (584)
..++.+-.+++..|+.|.-+ |+ -. .|+.+|++...
T Consensus 145 -ellelVemEvreLLs~y~f~--gd--~~----Pii~gSal~al------------------------------------ 179 (394)
T COG0050 145 -ELLELVEMEVRELLSEYGFP--GD--DT----PIIRGSALKAL------------------------------------ 179 (394)
T ss_pred -HHHHHHHHHHHHHHHHcCCC--CC--Cc----ceeechhhhhh------------------------------------
Confidence 23444556678888766422 21 11 24444432100
Q ss_pred CeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHHH
Q 007929 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (584)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LLd 326 (584)
+.++ .|...+..||+
T Consensus 180 ---------------------------------e~~~--------------------------------~~~~~i~eLm~ 194 (394)
T COG0050 180 ---------------------------------EGDA--------------------------------KWEAKIEELMD 194 (394)
T ss_pred ---------------------------------cCCc--------------------------------chHHHHHHHHH
Confidence 0000 01111367899
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCC
Q 007929 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (584)
Q Consensus 327 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~ 406 (584)
++.+|+|.|.. +.+.||.+.|-.++.....|. ++++||-.|+|+.|+++.+.|-
T Consensus 195 avd~yip~Per-------------------------~~dkPflmpvEdvfsIsgrgt-vvtGrVeRG~lkvg~eveivG~ 248 (394)
T COG0050 195 AVDSYIPTPER-------------------------DIDKPFLMPVEDVFSISGRGT-VVTGRVERGILKVGEEVEIVGI 248 (394)
T ss_pred HHHhcCCCCCC-------------------------cccccccccceeeEEEcCcee-EEEEEEeeeeeccCCEEEEecc
Confidence 99999999953 457899999988888888899 9999999999999999999875
Q ss_pred CCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE--EccCcccccce-EeccCC
Q 007929 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 407 n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav--~gl~~~~~~tg-Tl~~~~ 463 (584)
. .+.+. .+..+- .-++..+++.|||-|.+ .|.+.--..-| .|+.++
T Consensus 249 ~-~~~kt------tvtgve----mfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 249 K-ETQKT------TVTGVE----MFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred c-cccee------EEEhHH----HHHHHHhccccCCCcceEEEeccccceecceEeecCC
Confidence 4 12111 222221 22456788889998765 34332212344 555554
No 46
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-30 Score=256.25 Aligned_cols=281 Identities=23% Similarity=0.333 Sum_probs=202.8
Q ss_pred eEEecccccCCCCChhHHHHHHH---HHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV---AAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll---~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
.|.||. +||+|||||||+.++- ...|.-. .-...-.|..|+|+.|||||.+..+-++..
T Consensus 54 HvNVGT-IGHVDHGKTTLTaAITkila~~g~A~---~~kydeID~APEEkaRGITIn~aHveYeTa-------------- 115 (449)
T KOG0460|consen 54 HVNVGT-IGHVDHGKTTLTAAITKILAEKGGAK---FKKYDEIDKAPEEKARGITINAAHVEYETA-------------- 115 (449)
T ss_pred cccccc-cccccCCchhHHHHHHHHHHhccccc---cccHhhhhcChhhhhccceEeeeeeeeecc--------------
Confidence 444455 9999999999999982 2222100 001123578899999999999877666554
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccccccccCCHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~ 165 (584)
..++--+|||||.||++.++.+..+.|+||+||.|++|..+||++++-.+.+-+++- ++|+||.|... ++
T Consensus 116 --~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~-----d~-- 186 (449)
T KOG0460|consen 116 --KRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD-----DP-- 186 (449)
T ss_pred --ccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC-----CH--
Confidence 677889999999999999999999999999999999999999999999999999995 58999999983 12
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcC
Q 007929 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~ 245 (584)
.-++-+--++|+.|+.|+-. |+ +..|..||++-.. .
T Consensus 187 --e~leLVEmE~RElLse~gf~--Gd------~~PvI~GSAL~AL----------------------------------e 222 (449)
T KOG0460|consen 187 --EMLELVEMEIRELLSEFGFD--GD------NTPVIRGSALCAL----------------------------------E 222 (449)
T ss_pred --HHHHHHHHHHHHHHHHcCCC--CC------CCCeeecchhhhh----------------------------------c
Confidence 12222333577788766533 32 1235556653100 0
Q ss_pred CCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHH
Q 007929 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (584)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LL 325 (584)
++ ++ ++..+ .+..||
T Consensus 223 g~----------------------------------~p------------eig~~-------------------aI~kLl 237 (449)
T KOG0460|consen 223 GR----------------------------------QP------------EIGLE-------------------AIEKLL 237 (449)
T ss_pred CC----------------------------------Cc------------cccHH-------------------HHHHHH
Confidence 00 00 01000 136789
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcC
Q 007929 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (584)
Q Consensus 326 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~ 405 (584)
|++.+|+|-|.. +-+.||+.-|-.+++.+..|. +..+|+..|+||+|+++-++|
T Consensus 238 davDsyip~P~R-------------------------~~~~pFl~pie~vfsI~GRGT-VvtGrlERG~lKkG~e~eivG 291 (449)
T KOG0460|consen 238 DAVDSYIPTPER-------------------------DLDKPFLLPIEDVFSIPGRGT-VVTGRLERGVLKKGDEVEIVG 291 (449)
T ss_pred HHHhccCCCccc-------------------------ccCCCceeehhheeeecCCce-EEEEEEeecccccCCEEEEec
Confidence 999999999963 346899999988899999999 999999999999999999998
Q ss_pred CCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE--EccCcccccce-EeccCC
Q 007929 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 406 ~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav--~gl~~~~~~tg-Tl~~~~ 463 (584)
.|.+. + ..|..|- .-...+++|.|||-+++ .|++.--.+-| .++.++
T Consensus 292 ~~~~l--k-----ttvtgie----mF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pG 341 (449)
T KOG0460|consen 292 HNKTL--K-----TTVTGIE----MFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPG 341 (449)
T ss_pred cCcce--e-----eEeehHH----HHHHHHHhcccccceehhhhcCCHHHHhcccEEecCC
Confidence 76432 2 2344433 22467899999999876 56665445777 777766
No 47
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.97 E-value=1.5e-29 Score=247.49 Aligned_cols=196 Identities=42% Similarity=0.688 Sum_probs=172.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccc---cCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+|++ +||+|+|||||+++|++.++.+.+. ..+..+++|.+++|++||+|+......+.|.. .+
T Consensus 2 nv~i---iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~-----------~~ 67 (213)
T cd04167 2 NVAI---AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD-----------SK 67 (213)
T ss_pred cEEE---EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc-----------CC
Confidence 6788 9999999999999999999988743 33356789999999999999999998888761 12
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~ 166 (584)
+..+.+++||||||.+|..++..+++.+|++|+|+|+.++...+++.+++.+...++|+++++||+|+...+..+++++.
T Consensus 68 ~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~ 147 (213)
T cd04167 68 GKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDA 147 (213)
T ss_pred CCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHH
Confidence 34689999999999999999999999999999999999999999988888877778999999999999877778889999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHh
Q 007929 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (584)
Q Consensus 167 ~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y 221 (584)
+..++++++++|..+..+...+ .+.+.|...||.++|+..||+|++++|+++|
T Consensus 148 ~~~l~~~i~~~n~~~~~~~~~~--~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~ 200 (213)
T cd04167 148 YFKLRHIIDEVNNIIASFSTTL--SFLFSPENGNVCFASSKFGFCFTLESFAKKY 200 (213)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--ceEeccCCCeEEEEecCCCeEEecHHHHhhh
Confidence 9999999999999997765432 2568899999999999999999999999877
No 48
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.97 E-value=1.2e-28 Score=271.74 Aligned_cols=307 Identities=20% Similarity=0.255 Sum_probs=210.1
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
..+...|++ +||+|||||||+++|.... + ..+..+|+|+......+.|..
T Consensus 84 ~~r~p~V~I---~Ghvd~GKTSLl~~l~~~~--v--------------~~~e~~GIT~~ig~~~v~~~~----------- 133 (587)
T TIGR00487 84 VERPPVVTI---MGHVDHGKTSLLDSIRKTK--V--------------AQGEAGGITQHIGAYHVENED----------- 133 (587)
T ss_pred ccCCCEEEE---ECCCCCCHHHHHHHHHhCC--c--------------ccccCCceeecceEEEEEECC-----------
Confidence 346678999 9999999999999994321 1 111235788888777777751
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHH
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~ 164 (584)
+..++|||||||.+|...+.++++.+|++|+|||+.+|+..||.++|+.+...++|+++++||+|+.. .+++
T Consensus 134 ----~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~----~~~e 205 (587)
T TIGR00487 134 ----GKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE----ANPD 205 (587)
T ss_pred ----CcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc----CCHH
Confidence 23899999999999999999999999999999999999999999999998888999999999999973 2333
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
++.+.++ +.......|. +..+ +...|+..|.+.
T Consensus 206 ~v~~~L~----~~g~~~~~~~----~~~~-------~v~iSAktGeGI-------------------------------- 238 (587)
T TIGR00487 206 RVKQELS----EYGLVPEDWG----GDTI-------FVPVSALTGDGI-------------------------------- 238 (587)
T ss_pred HHHHHHH----HhhhhHHhcC----CCce-------EEEEECCCCCCh--------------------------------
Confidence 2221111 1000000010 0011 111233322210
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHH
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~L 324 (584)
..|
T Consensus 239 -----------------------------------------------------------------------------~eL 241 (587)
T TIGR00487 239 -----------------------------------------------------------------------------DEL 241 (587)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 111
Q ss_pred HHHHHh--cCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEE
Q 007929 325 LEMMIF--HLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVR 402 (584)
Q Consensus 325 Ld~i~~--~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~ 402 (584)
++.+.. .++.+ ..++++|+.++|++...++..|. ++++||++|+|+.||.|.
T Consensus 242 l~~I~~~~~~~~l-------------------------~~~~~~~~~~~V~ev~~~~g~G~-v~~~~V~~GtL~~Gd~iv 295 (587)
T TIGR00487 242 LDMILLQSEVEEL-------------------------KANPNGQASGVVIEAQLDKGRGP-VATVLVQSGTLRVGDIVV 295 (587)
T ss_pred HHhhhhhhhhccc-------------------------cCCCCCCceeEEEEEEEeCCCcE-EEEEEEEeCEEeCCCEEE
Confidence 111110 00111 12456899999999999999898 999999999999999997
Q ss_pred EcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCC-CCC--------------
Q 007929 403 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEK-EVD-------------- 466 (584)
Q Consensus 403 v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~-~~~-------------- 466 (584)
+. +. . .+|..|+...| ..+++|.||++|.|.|+++. ..+| +|.-.. +..
T Consensus 296 ~~-~~-----~-----~kVr~l~~~~g---~~v~~a~~g~~v~i~Gl~~~-p~aGd~~~~~~~e~~a~~~~~~r~~~~~~ 360 (587)
T TIGR00487 296 VG-AA-----Y-----GRVRAMIDENG---KSVKEAGPSKPVEILGLSDV-PAAGDEFIVFKDEKDARLVAEKRAGKLRQ 360 (587)
T ss_pred EC-CC-----c-----cEEEEEECCCC---CCCCEECCCCEEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 53 21 1 36766665444 57899999999999999874 3567 664211 000
Q ss_pred -------cccccccccC----CCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEE
Q 007929 467 -------AHPIRAMKFS----VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM 514 (584)
Q Consensus 467 -------~~~~~~~~~~----~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~ 514 (584)
...+..+..+ ..|.+.+.|++...+..+.|.++|.++..++|++.+-.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 361 KALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH 419 (587)
T ss_pred HhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE
Confidence 0111111111 13789999999999999999999999999999999865
No 49
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.97 E-value=2e-29 Score=271.48 Aligned_cols=287 Identities=22% Similarity=0.307 Sum_probs=205.9
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCcccccc----------CC-----CeeeeCChhhHhhhccceecceEEE
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRQDEAERGITIKSTGISL 69 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~r~~Ti~~~~~~~ 69 (584)
...+++|++ +||+|||||||+++|++.+|.+++.. .| ..+++|..++|++||+|++.+...+
T Consensus 4 ~~~~~~v~i---~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~ 80 (426)
T TIGR00483 4 EKEHINVAF---IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF 80 (426)
T ss_pred CCceeEEEE---EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence 456789999 99999999999999999999887431 12 2468999999999999999999888
Q ss_pred EeecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC---CchhHHHHHHHHHhcCCc-e
Q 007929 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG---VCVQTETVLRQALGERIR-P 145 (584)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g---~~~~t~~~l~~~~~~~~p-~ 145 (584)
.+. ++.++|||||||.+|...+..+++.+|++++|||+.+| ...++..++..+...+++ +
T Consensus 81 ~~~----------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~i 144 (426)
T TIGR00483 81 ETD----------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQL 144 (426)
T ss_pred ccC----------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeE
Confidence 877 78999999999999999999999999999999999999 888888877776666655 6
Q ss_pred EEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhc
Q 007929 146 VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKF 225 (584)
Q Consensus 146 ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~ 225 (584)
++++||+|+.. .+. ..++++.++++..+..+... +....+...|+..|.+..
T Consensus 145 IVviNK~Dl~~----~~~----~~~~~~~~ei~~~~~~~g~~--------~~~~~~i~iSA~~g~ni~------------ 196 (426)
T TIGR00483 145 IVAINKMDSVN----YDE----EEFEAIKKEVSNLIKKVGYN--------PDTVPFIPISAWNGDNVI------------ 196 (426)
T ss_pred EEEEEChhccC----ccH----HHHHHHHHHHHHHHHHcCCC--------cccceEEEeecccccccc------------
Confidence 68999999962 222 34556666666665433211 100012223555444210
Q ss_pred CCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHh
Q 007929 226 GVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELM 305 (584)
Q Consensus 226 ~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~ 305 (584)
..+. ..| |.++
T Consensus 197 -----------------------------------~~~~---~~~------------------w~~g------------- 207 (426)
T TIGR00483 197 -----------------------------------KKSE---NTP------------------WYKG------------- 207 (426)
T ss_pred -----------------------------------cccc---CCc------------------cccc-------------
Confidence 0000 000 1111
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCcee
Q 007929 306 GKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFF 385 (584)
Q Consensus 306 ~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l 385 (584)
..|++++.+ +|+|.. +.++||.++|..++..++.|. +
T Consensus 208 ----------------~~l~~~l~~-~~~~~~-------------------------~~~~p~r~~i~~v~~~~g~G~-v 244 (426)
T TIGR00483 208 ----------------KTLLEALDA-LEPPEK-------------------------PTDKPLRIPIQDVYSITGVGT-V 244 (426)
T ss_pred ----------------hHHHHHHhc-CCCCCC-------------------------ccCCCcEEEEEEEEecCCCeE-E
Confidence 346666644 555521 235899999999998888888 9
Q ss_pred EEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE--EccCcccccce-EeccC
Q 007929 386 AFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 462 (584)
Q Consensus 386 ~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav--~gl~~~~~~tg-Tl~~~ 462 (584)
..|||.+|+|+.||.|.+.+.+ .. .+|.+|.. ...++++|.|||.|++ .+++..-...| .|+++
T Consensus 245 v~G~v~~G~i~~gd~v~i~P~~----~~-----~~VksI~~----~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 245 PVGRVETGVLKPGDKVVFEPAG----VS-----GEVKSIEM----HHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred EEEEEccceeecCCEEEECCCC----cE-----EEEEEEEE----CCcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 9999999999999999987542 22 47777773 3467999999999988 34432223567 77765
Q ss_pred C
Q 007929 463 K 463 (584)
Q Consensus 463 ~ 463 (584)
.
T Consensus 312 ~ 312 (426)
T TIGR00483 312 D 312 (426)
T ss_pred C
Confidence 4
No 50
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.96 E-value=8.6e-28 Score=257.41 Aligned_cols=134 Identities=24% Similarity=0.254 Sum_probs=103.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEee-cch---h-hhhc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE-MTD---A-ALKS 80 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~-~~~---~-~~~~ 80 (584)
..+++|++ +||+|||||||+.+|. | ..+|..++|++||+|++.++..+.+. .+. + ...+
T Consensus 32 ~~~~~ig~---~GHVDhGKTtLv~aLt-----------g--~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~ 95 (460)
T PTZ00327 32 QATINIGT---IGHVAHGKSTVVKALS-----------G--VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQS 95 (460)
T ss_pred CCcEEEEE---EccCCCCHHHHHHHHh-----------C--CCcccchhhHHhCCchhccccccccccCcccCCcccccc
Confidence 34567777 9999999999999993 1 45788899999999999888766431 000 0 0000
Q ss_pred cccc------CC--C----CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCCc-eE
Q 007929 81 YRGE------RQ--G----NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PV 146 (584)
Q Consensus 81 ~~~~------~~--~----~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-~~~~t~~~l~~~~~~~~p-~i 146 (584)
.+.. +. . -.+.++|||||||.+|..++.+++..+|+|++||||.+| ++.||.+++..+...+++ +|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iI 175 (460)
T PTZ00327 96 YGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHII 175 (460)
T ss_pred cCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEE
Confidence 0000 00 0 035799999999999999999999999999999999997 799999999888778887 56
Q ss_pred EEEecCccc
Q 007929 147 LTVNKMDRC 155 (584)
Q Consensus 147 vviNK~D~~ 155 (584)
+|+||||+.
T Consensus 176 VvlNKiDlv 184 (460)
T PTZ00327 176 ILQNKIDLV 184 (460)
T ss_pred EEEeccccc
Confidence 899999997
No 51
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.96 E-value=1.8e-27 Score=265.51 Aligned_cols=306 Identities=17% Similarity=0.202 Sum_probs=209.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+...|+| +||+|||||||+++|....... +..+|+|.......+.|..
T Consensus 242 ~r~p~V~I---vGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~------------ 290 (742)
T CHL00189 242 NRPPIVTI---LGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEY------------ 290 (742)
T ss_pred ccCCEEEE---ECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEe------------
Confidence 46678999 9999999999999996543321 1235788877766666641
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 165 (584)
++.++.|+|||||||.+|...+.++++.+|++|+|||+.+|++.||.++|..+...++|+|+++||+|+..
T Consensus 291 ~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~--------- 361 (742)
T CHL00189 291 KDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN--------- 361 (742)
T ss_pred cCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc---------
Confidence 12368999999999999999999999999999999999999999999999998888999999999999973
Q ss_pred HHHHHHHHHHHHHHH--H-hhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCccc
Q 007929 166 AYQTFQKVIENANVI--M-ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 242 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~--l-~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~ 242 (584)
.++.++..++... + ..++ +.+ .+...|+..|.+
T Consensus 362 --~~~e~v~~eL~~~~ll~e~~g----~~v-------pvv~VSAktG~G------------------------------- 397 (742)
T CHL00189 362 --ANTERIKQQLAKYNLIPEKWG----GDT-------PMIPISASQGTN------------------------------- 397 (742)
T ss_pred --cCHHHHHHHHHHhccchHhhC----CCc-------eEEEEECCCCCC-------------------------------
Confidence 1222222222111 0 0000 000 111223322221
Q ss_pred CcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchH
Q 007929 243 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASS 322 (584)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~ 322 (584)
+.
T Consensus 398 ------------------------------------------------------------------------------Id 399 (742)
T CHL00189 398 ------------------------------------------------------------------------------ID 399 (742)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 01
Q ss_pred HHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEE
Q 007929 323 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVR 402 (584)
Q Consensus 323 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~ 402 (584)
.|++++..+.+.+. ..+++++|+.++|+++..+++.|. ++++||++|+|+.||.|+
T Consensus 400 eLle~I~~l~e~~~-----------------------lk~~~~~~~~g~V~e~~iD~~~G~-V~~~~V~sGtLr~GD~vv 455 (742)
T CHL00189 400 KLLETILLLAEIED-----------------------LKADPTQLAQGIILEAHLDKTKGP-VATILVQNGTLHIGDIIV 455 (742)
T ss_pred HHHHhhhhhhhhhc-----------------------ccCCCCCCceEEEEEEEEcCCCce-EEEEEEEcCEEecCCEEE
Confidence 12222222111000 012556789999999999999998 999999999999999997
Q ss_pred EcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCC-CCCc-------------
Q 007929 403 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEK-EVDA------------- 467 (584)
Q Consensus 403 v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~-~~~~------------- 467 (584)
+. + +.++++.+.+....++++|.|||+|+|.||.+. .++| +|.--. +..+
T Consensus 456 ~g-~-------------~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~-~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~ 520 (742)
T CHL00189 456 IG-T-------------SYAKIRGMINSLGNKINLATPSSVVEIWGLSSV-PATGEHFQVFNSEKEAKLKIIKNKENNKK 520 (742)
T ss_pred EC-C-------------cceEEEEEEcCCCcCccEEcCCCceEecCcccC-CCCCCEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 42 1 345667777888899999999999999999654 4677 553211 0000
Q ss_pred -----ccccc----cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEE
Q 007929 468 -----HPIRA----MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVC 512 (584)
Q Consensus 468 -----~~~~~----~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v 512 (584)
..+.. ......+.+.+.|.+...+-.+.|..+|.++..+.-.+.+
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~i 574 (742)
T CHL00189 521 DTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLNI 574 (742)
T ss_pred hhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEEE
Confidence 00000 0011246788999999999999999999998665544444
No 52
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-27 Score=250.72 Aligned_cols=285 Identities=22% Similarity=0.308 Sum_probs=212.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccc------------cCC---CeeeeCChhhHhhhccceecceEEEEe
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE------------VAG---DVRMTDTRQDEAERGITIKSTGISLYY 71 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~------------~~g---~~~~~D~~~~E~~r~~Ti~~~~~~~~~ 71 (584)
-+++.++ +||+|+|||||.++|||..|.+..+ +.+ +.|++|...+|++||+|++.....|+-
T Consensus 176 ~~l~lvv---~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 176 DHLNLVV---LGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred cceEEEE---EeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3467777 9999999999999999999998765 122 579999999999999999999988875
Q ss_pred ecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCc
Q 007929 72 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR 144 (584)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-------~~~~t~~~l~~~~~~~~p 144 (584)
. .+.++|+|+|||.||+..++.+...||.|+|||||+-| ...||.++...+...|+.
T Consensus 253 ~----------------~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~ 316 (603)
T KOG0458|consen 253 K----------------SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS 316 (603)
T ss_pred C----------------ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc
Confidence 5 79999999999999999999999999999999999865 577999999998888987
Q ss_pred -eEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHH-hhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhh
Q 007929 145 -PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM-ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (584)
Q Consensus 145 -~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l-~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~ 222 (584)
.||++||||... + .+.+|+++...++..| .+++-.. ..+.|.|. ||..|-+.
T Consensus 317 qlivaiNKmD~V~----W----sq~RF~eIk~~l~~fL~~~~gf~e-s~v~FIPi-------SGl~GeNL---------- 370 (603)
T KOG0458|consen 317 QLIVAINKMDLVS----W----SQDRFEEIKNKLSSFLKESCGFKE-SSVKFIPI-------SGLSGENL---------- 370 (603)
T ss_pred eEEEEeecccccC----c----cHHHHHHHHHHHHHHHHHhcCccc-CCcceEec-------ccccCCcc----------
Confidence 668999999983 2 3479999999999888 4432111 12344442 44332211
Q ss_pred hhcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHH
Q 007929 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (584)
Q Consensus 223 ~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~ 302 (584)
... .++..+-+|-++
T Consensus 371 ---------------------------~k~----------------------------~~~~~l~~WY~G---------- 385 (603)
T KOG0458|consen 371 ---------------------------IKI----------------------------EQENELSQWYKG---------- 385 (603)
T ss_pred ---------------------------ccc----------------------------ccchhhhhhhcC----------
Confidence 000 012233444444
Q ss_pred HHhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCC
Q 007929 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (584)
Q Consensus 303 ~~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g 382 (584)
..||+.|-. +-.|.. +-+.||+.-|..++..+..|
T Consensus 386 -------------------p~LL~~id~-~~~p~~-------------------------~~~kPl~ltIsdi~~~~~~~ 420 (603)
T KOG0458|consen 386 -------------------PTLLSQIDS-FKIPER-------------------------PIDKPLRLTISDIYPLPSSG 420 (603)
T ss_pred -------------------ChHHHHHhh-ccCCCC-------------------------cccCCeEEEhhheeecCCCe
Confidence 456777765 434421 13469999999999888877
Q ss_pred ceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--ccCcccccce-Ee
Q 007929 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TL 459 (584)
Q Consensus 383 ~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--gl~~~~~~tg-Tl 459 (584)
+..+|||.||.|.+||.||++.+. .+ ..|..|. +.-.+...|.|||-|.+. ++.-.....| ++
T Consensus 421 -~~i~gkiesG~iq~gqkl~i~~s~-----e~----~~vk~l~----~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~ 486 (603)
T KOG0458|consen 421 -VSISGKIESGYIQPGQKLYIMTSR-----ED----ATVKGLT----SNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIA 486 (603)
T ss_pred -eEEEEEEeccccccCCEEEEecCc-----ce----EEEEeee----cCCCcceeEeeCCEEEEecCccChhhcccceee
Confidence 489999999999999999987542 11 3555555 446788999999998874 5333334667 55
Q ss_pred c
Q 007929 460 T 460 (584)
Q Consensus 460 ~ 460 (584)
+
T Consensus 487 ~ 487 (603)
T KOG0458|consen 487 D 487 (603)
T ss_pred e
Confidence 5
No 53
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.96 E-value=1.9e-27 Score=267.57 Aligned_cols=150 Identities=27% Similarity=0.316 Sum_probs=126.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccc----------cCCC-------eeeeCChhhHhhhccceecceEE
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-------VRMTDTRQDEAERGITIKSTGIS 68 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-------~~~~D~~~~E~~r~~Ti~~~~~~ 68 (584)
...++|+| +||+|||||||+++||+..|.++.. ..|. .+++|..++|++||+|++.+...
T Consensus 22 ~~~~~i~i---iGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 22 KSLLRFIT---CGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred CCeeEEEE---ECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 45689999 9999999999999999999998743 2332 36899999999999999999988
Q ss_pred EEeecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEE
Q 007929 69 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVL 147 (584)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~iv 147 (584)
+.|+ +.+++|||||||.+|...+..++..+|++++|||+.+|+..||++++..+...+++ +++
T Consensus 99 ~~~~----------------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iiv 162 (632)
T PRK05506 99 FATP----------------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVL 162 (632)
T ss_pred EccC----------------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEE
Confidence 8887 78999999999999999999999999999999999999999999999988777765 568
Q ss_pred EEecCccccccccCCHHHHHHHHHHHHHHHHHHHh
Q 007929 148 TVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMA 182 (584)
Q Consensus 148 viNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~ 182 (584)
++||||+.. .+. ..+.++..+++..+.
T Consensus 163 vvNK~D~~~----~~~----~~~~~i~~~i~~~~~ 189 (632)
T PRK05506 163 AVNKMDLVD----YDQ----EVFDEIVADYRAFAA 189 (632)
T ss_pred EEEeccccc----chh----HHHHHHHHHHHHHHH
Confidence 999999962 111 345556666655543
No 54
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.95 E-value=1.2e-27 Score=229.45 Aligned_cols=169 Identities=31% Similarity=0.413 Sum_probs=141.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEE--eecchhhhhccc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLY--YEMTDAALKSYR 82 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~--~~~~~~~~~~~~ 82 (584)
+.++|++ +||+|||||||+++|++..+.+.+.+. +..+.+|..++|++|++|++.+...+. +.
T Consensus 2 ~~~~I~i---~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~---------- 68 (188)
T PF00009_consen 2 NIRNIAI---IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN---------- 68 (188)
T ss_dssp TEEEEEE---EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES----------
T ss_pred CEEEEEE---ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc----------
Confidence 5689999 999999999999999999998776532 124578999999999999999999998 66
Q ss_pred ccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCC
Q 007929 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (584)
Q Consensus 83 ~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~ 162 (584)
++.++|||||||.+|..++.++++.+|+||+|||+.+|++.+|.++|+.+...++|+++|+||||+..
T Consensus 69 ------~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~------ 136 (188)
T PF00009_consen 69 ------NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE------ 136 (188)
T ss_dssp ------SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH------
T ss_pred ------ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh------
Confidence 89999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhccCCCCCcceecccCCccccccCCcceee
Q 007929 163 GEEAYQTFQKVIENANVIM-ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 212 (584)
Q Consensus 163 ~~~~~~~~~~~l~~v~~~l-~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 212 (584)
.++++.+++++..+ +.+... +. ... ++.+.|+..||++
T Consensus 137 -----~~~~~~~~~~~~~l~~~~~~~--~~-~~~----~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 137 -----KELEEIIEEIKEKLLKEYGEN--GE-EIV----PVIPISALTGDGI 175 (188)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTST--TT-STE----EEEEEBTTTTBTH
T ss_pred -----hhHHHHHHHHHHHhccccccC--cc-ccc----eEEEEecCCCCCH
Confidence 67888888887444 333211 10 012 3667899999864
No 55
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.95 E-value=4.5e-26 Score=243.30 Aligned_cols=136 Identities=22% Similarity=0.234 Sum_probs=106.6
Q ss_pred cccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchh----hhh
Q 007929 4 YCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA----ALK 79 (584)
Q Consensus 4 ~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~----~~~ 79 (584)
....+++|++ +||+|||||||+++|. ..++|..++|++||+|++++...+.|..... ...
T Consensus 5 ~~~~~~ni~v---~Gh~d~GKSTL~~~L~-------------~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~ 68 (411)
T PRK04000 5 KVQPEVNIGM---VGHVDHGKTTLVQALT-------------GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAY 68 (411)
T ss_pred cCCCcEEEEE---EccCCCCHHHHHHHhh-------------CeecccCHhHHhcCcEEEecccccccccccccCccccc
Confidence 3457789999 9999999999999992 1468999999999999998876666531100 000
Q ss_pred cccccCC------CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCCc-eEEEEec
Q 007929 80 SYRGERQ------GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNK 151 (584)
Q Consensus 80 ~~~~~~~------~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-~~~t~~~l~~~~~~~~p-~ivviNK 151 (584)
+.....+ ...+.++|||||||.+|..++..++..+|++++|||+.+|. ..++..++..+...+++ +++++||
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK 148 (411)
T PRK04000 69 TTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNK 148 (411)
T ss_pred cccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEe
Confidence 0000000 11478999999999999999999999999999999999998 89999999887777765 6789999
Q ss_pred Cccc
Q 007929 152 MDRC 155 (584)
Q Consensus 152 ~D~~ 155 (584)
+|+.
T Consensus 149 ~Dl~ 152 (411)
T PRK04000 149 IDLV 152 (411)
T ss_pred eccc
Confidence 9997
No 56
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.95 E-value=3.9e-26 Score=253.66 Aligned_cols=254 Identities=22% Similarity=0.285 Sum_probs=181.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
-|++ +||+|||||||+++|.+ ..+|..++|++||+|++.....+... ++
T Consensus 2 ii~~---~GhvdhGKTtLi~aLtg-------------~~~dr~~eE~~rGiTI~l~~~~~~~~---------------~g 50 (614)
T PRK10512 2 IIAT---AGHVDHGKTTLLQAITG-------------VNADRLPEEKKRGMTIDLGYAYWPQP---------------DG 50 (614)
T ss_pred EEEE---ECCCCCCHHHHHHHHhC-------------CCCccchhcccCCceEEeeeEEEecC---------------CC
Confidence 3555 99999999999999931 23678889999999999877665443 15
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccccccccCCHHHHHH
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGEEAYQ 168 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~~~~~~~~~~~~~~ 168 (584)
..++|||||||.+|...+..++..+|++++|||+.+|+..||.+++..+...++|. ++|+||+|+.. . .
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~------~----~ 120 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD------E----A 120 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC------H----H
Confidence 67999999999999999999999999999999999999999999999887788885 68999999973 1 3
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCCCe
Q 007929 169 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 248 (584)
Q Consensus 169 ~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~~~ 248 (584)
.+..+.+++...+..++.. ..| +...|+..|.+.
T Consensus 121 ~~~~v~~ei~~~l~~~~~~------~~~----ii~VSA~tG~gI------------------------------------ 154 (614)
T PRK10512 121 RIAEVRRQVKAVLREYGFA------EAK----LFVTAATEGRGI------------------------------------ 154 (614)
T ss_pred HHHHHHHHHHHHHHhcCCC------CCc----EEEEeCCCCCCC------------------------------------
Confidence 4555556665555322100 011 222233322210
Q ss_pred eeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHHHHH
Q 007929 249 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 328 (584)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LLd~i 328 (584)
..|++.+
T Consensus 155 -------------------------------------------------------------------------~~L~~~L 161 (614)
T PRK10512 155 -------------------------------------------------------------------------DALREHL 161 (614)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1223333
Q ss_pred HhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCC
Q 007929 329 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 408 (584)
Q Consensus 329 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~ 408 (584)
..+ |.|.. +.++||..+|..++..+..|. +..|+|.||+|+.||+|.+.+.+
T Consensus 162 ~~~-~~~~~-------------------------~~~~~~rl~Id~vf~v~G~Gt-VvtGtv~sG~l~~Gd~v~i~p~~- 213 (614)
T PRK10512 162 LQL-PEREH-------------------------AAQHRFRLAIDRAFTVKGAGL-VVTGTALSGEVKVGDTLWLTGVN- 213 (614)
T ss_pred HHh-hcccc-------------------------CcCCCceEEEEEEeccCCCeE-EEEEEEecceEecCCEEEEcCCC-
Confidence 332 22311 235789999988888888898 99999999999999999987532
Q ss_pred CCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--c-cCcccccce-EeccCC
Q 007929 409 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--G-LDQYITKNA-TLTNEK 463 (584)
Q Consensus 409 ~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--g-l~~~~~~tg-Tl~~~~ 463 (584)
.. .+|.+|. ....++++|.|||.|++. | ++..-.+.| +|++++
T Consensus 214 ---~~-----~~VrsIq----~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 214 ---KP-----MRVRGLH----AQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred ---Cc-----EEEEEEe----cCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 22 3677766 334789999999999883 3 432223566 777653
No 57
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.94 E-value=1.6e-25 Score=239.29 Aligned_cols=133 Identities=24% Similarity=0.248 Sum_probs=105.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhh-----cc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK-----SY 81 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~-----~~ 81 (584)
.+++|++ +||+|||||||+++|. ...+|..++|++||+|++++...+.|.... ... ..
T Consensus 3 ~~~~i~i---iG~~~~GKSTL~~~Lt-------------~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~~~~~~~ 65 (406)
T TIGR03680 3 PEVNIGM---VGHVDHGKTTLTKALT-------------GVWTDTHSEELKRGISIRLGYADAEIYKCP-ECDGPECYTT 65 (406)
T ss_pred ceEEEEE---EccCCCCHHHHHHHHh-------------CeecccCHhHHHcCceeEeccccccccccc-ccCccccccc
Confidence 4678999 9999999999999992 135889999999999999887766543100 000 00
Q ss_pred cccCC------CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCCc-eEEEEecCc
Q 007929 82 RGERQ------GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKMD 153 (584)
Q Consensus 82 ~~~~~------~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-~~~t~~~l~~~~~~~~p-~ivviNK~D 153 (584)
....+ ..+..+++||||||.+|..++..+++.+|++++|||+.+|. ..||.+++..+...+++ +++++||+|
T Consensus 66 ~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~D 145 (406)
T TIGR03680 66 EPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKID 145 (406)
T ss_pred cccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccc
Confidence 00000 12478999999999999999999999999999999999998 89999999887777765 678999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 146 l~~ 148 (406)
T TIGR03680 146 LVS 148 (406)
T ss_pred cCC
Confidence 973
No 58
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.94 E-value=1.6e-26 Score=222.12 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=132.1
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
+++|++ +||+|||||||+++|++......+......+.+|+.++|++||+|++++...+.++
T Consensus 2 ~~ni~i---iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------------- 63 (195)
T cd01884 2 HVNVGT---IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--------------- 63 (195)
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC---------------
Confidence 578999 99999999999999998754322221122357999999999999999998888776
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCccccccccCCHHHH
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEA 166 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~~ 166 (584)
+++++|+|||||.+|..++.++++.+|+|++|||+.+|++.+|+++|+.+.+.++| +|+|+||||+.. .+
T Consensus 64 -~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~------~~-- 134 (195)
T cd01884 64 -NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD------DE-- 134 (195)
T ss_pred -CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC------cH--
Confidence 78999999999999999999999999999999999999999999999999889998 568999999962 12
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCccee
Q 007929 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWA 211 (584)
Q Consensus 167 ~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~ 211 (584)
..++.+.++++..|..+.. .+....+.+.|+..|+.
T Consensus 135 -~~~~~~~~~i~~~l~~~g~--------~~~~v~iipiSa~~g~n 170 (195)
T cd01884 135 -ELLELVEMEVRELLSKYGF--------DGDNTPIVRGSALKALE 170 (195)
T ss_pred -HHHHHHHHHHHHHHHHhcc--------cccCCeEEEeeCccccC
Confidence 2344455667777754321 11112355568877663
No 59
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.93 E-value=1.4e-24 Score=240.68 Aligned_cols=116 Identities=32% Similarity=0.356 Sum_probs=103.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
+.|++ +||+|||||||+++|.. ..+|..++|.+||+|++.....+.+.
T Consensus 1 ~~I~i---iG~~d~GKTTLi~aLtg-------------~~~d~~~eE~~rGiTid~~~~~~~~~---------------- 48 (581)
T TIGR00475 1 MIIAT---AGHVDHGKTTLLKALTG-------------IAADRLPEEKKRGMTIDLGFAYFPLP---------------- 48 (581)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhC-------------ccCcCChhHhcCCceEEeEEEEEEeC----------------
Confidence 35777 99999999999999942 12577789999999999988777776
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~~ 156 (584)
++.++|||||||.+|...+..++..+|++++|||+.+|+..||.+++..+...++| +++|+||||+..
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN 117 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC
Confidence 68999999999999999999999999999999999999999999999888778999 889999999973
No 60
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5e-24 Score=211.24 Aligned_cols=148 Identities=26% Similarity=0.293 Sum_probs=123.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCcccccc----------CC-------CeeeeCChhhHhhhccceecceEEE
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AG-------DVRMTDTRQDEAERGITIKSTGISL 69 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g-------~~~~~D~~~~E~~r~~Ti~~~~~~~ 69 (584)
+.++.+. +|++|.|||||+.+|||.+..+-... .| ..-..|-.+.|+|.||||+.++..|
T Consensus 5 ~lLRfiT---cGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 5 SLLRFIT---CGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred cceeEEE---eccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 3456777 99999999999999999998764331 11 1346788899999999999999888
Q ss_pred EeecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEE
Q 007929 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLT 148 (584)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivv 148 (584)
... ..+|.+.|||||+.|...|..+.+-||.||++|||..|+..||+++-..+.-.+++. ++.
T Consensus 82 sT~----------------KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvA 145 (431)
T COG2895 82 STE----------------KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVA 145 (431)
T ss_pred ccc----------------cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEE
Confidence 766 789999999999999999999999999999999999999999999988887889985 588
Q ss_pred EecCccccccccCCHHHHHHHHHHHHHHHHHHH
Q 007929 149 VNKMDRCFLELQVDGEEAYQTFQKVIENANVIM 181 (584)
Q Consensus 149 iNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l 181 (584)
+||||+.+ ++. ..|+++.++-+...
T Consensus 146 VNKmDLvd----y~e----~~F~~I~~dy~~fa 170 (431)
T COG2895 146 VNKMDLVD----YSE----EVFEAIVADYLAFA 170 (431)
T ss_pred Eeeecccc----cCH----HHHHHHHHHHHHHH
Confidence 99999984 332 57777777655544
No 61
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.92 E-value=5.1e-25 Score=216.32 Aligned_cols=150 Identities=25% Similarity=0.332 Sum_probs=125.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCcccccc----------CCC-----eeeeCChhhHhhhccceecceEEEEeecc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYYEMT 74 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~ 74 (584)
+|++ +||+|||||||+++|++.+|.+++.+ .|. .+++|+.++|++||+|+++...++.|.
T Consensus 1 nv~i---~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~-- 75 (219)
T cd01883 1 NLVV---IGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE-- 75 (219)
T ss_pred CEEE---ecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--
Confidence 5788 99999999999999999999988654 232 248999999999999999999999998
Q ss_pred hhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCC-------CCchhHHHHHHHHHhcCC-ceE
Q 007929 75 DAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------GVCVQTETVLRQALGERI-RPV 146 (584)
Q Consensus 75 ~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~-------g~~~~t~~~l~~~~~~~~-p~i 146 (584)
++++++||||||.+|..++..+++.+|++|+|||+.+ +...++.+++..+...++ |++
T Consensus 76 --------------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 141 (219)
T cd01883 76 --------------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLI 141 (219)
T ss_pred --------------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEE
Confidence 8999999999999999999999999999999999998 577899998888766675 566
Q ss_pred EEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhc
Q 007929 147 LTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY 184 (584)
Q Consensus 147 vviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~ 184 (584)
+|+||||+...+ +....+.+++++++..+..+
T Consensus 142 ivvNK~Dl~~~~------~~~~~~~~i~~~l~~~l~~~ 173 (219)
T cd01883 142 VAVNKMDDVTVN------WSEERYDEIKKELSPFLKKV 173 (219)
T ss_pred EEEEcccccccc------ccHHHHHHHHHHHHHHHHHc
Confidence 799999997311 11145777777777766543
No 62
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.91 E-value=5.1e-24 Score=207.60 Aligned_cols=146 Identities=26% Similarity=0.270 Sum_probs=121.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCcccccc------------C---CCeeeeCChhhHhhhccceecceEEEEeecc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV------------A---GDVRMTDTRQDEAERGITIKSTGISLYYEMT 74 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~------------~---g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~ 74 (584)
+|+| +||+|||||||+++|++.+|.+.... . .+.+++|..++|++||+|++.....+.|.
T Consensus 1 ~i~i---iG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~-- 75 (208)
T cd04166 1 RFLT---CGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP-- 75 (208)
T ss_pred CEEE---EECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--
Confidence 4788 99999999999999999999987321 0 13678999999999999999999988887
Q ss_pred hhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCc
Q 007929 75 DAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMD 153 (584)
Q Consensus 75 ~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D 153 (584)
+..++|||||||.+|..++..+++.+|++|+|+|+.+|...+++.++..+...++| +|+|+||||
T Consensus 76 --------------~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D 141 (208)
T cd04166 76 --------------KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMD 141 (208)
T ss_pred --------------CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchh
Confidence 78999999999999999999999999999999999999999999888887777766 457899999
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHh
Q 007929 154 RCFLELQVDGEEAYQTFQKVIENANVIMA 182 (584)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~v~~~l~ 182 (584)
+.. ... ..+.++..+++..+.
T Consensus 142 ~~~----~~~----~~~~~i~~~~~~~~~ 162 (208)
T cd04166 142 LVD----YSE----EVFEEIVADYLAFAA 162 (208)
T ss_pred ccc----CCH----HHHHHHHHHHHHHHH
Confidence 972 111 345555566665554
No 63
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.1e-22 Score=199.33 Aligned_cols=355 Identities=21% Similarity=0.263 Sum_probs=224.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEe-ecch---h--hhh
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYY-EMTD---A--ALK 79 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~-~~~~---~--~~~ 79 (584)
+-+++|.. +||++||||||+.+| +| .++|.+.+|.+|||||+..+....+ +... + ...
T Consensus 8 Qp~vNIG~---vGHVdHGKtTlv~Al-----------sG--vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~ 71 (415)
T COG5257 8 QPEVNIGM---VGHVDHGKTTLTKAL-----------SG--VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTT 71 (415)
T ss_pred CcceEeee---eeecccchhhheehh-----------hc--eeeechhHHHhcCcEEEeccccCceEeCCCCCCCccccc
Confidence 34567766 999999999999999 33 6899999999999999988664332 2111 0 011
Q ss_pred ccccc-CC---CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCCc-eEEEEecCc
Q 007929 80 SYRGE-RQ---GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PVLTVNKMD 153 (584)
Q Consensus 80 ~~~~~-~~---~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-~~~~t~~~l~~~~~~~~p-~ivviNK~D 153 (584)
+..+. +. .--.++.|+|+|||+-++..|.++....|+|+|||+|.+. .|+||.+++-.+.-.+++ +|++-||+|
T Consensus 72 ~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKID 151 (415)
T COG5257 72 EPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKID 151 (415)
T ss_pred CCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccc
Confidence 11111 10 1145789999999999999999999999999999999986 799999998776566777 668999999
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHH
Q 007929 154 RCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMM 233 (584)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~ 233 (584)
+.. .+.+..+++++.+-++.... .+.++.| + |+.++
T Consensus 152 lV~------~E~AlE~y~qIk~FvkGt~A-------e~aPIIP------i-SA~~~------------------------ 187 (415)
T COG5257 152 LVS------RERALENYEQIKEFVKGTVA-------ENAPIIP------I-SAQHK------------------------ 187 (415)
T ss_pred eec------HHHHHHHHHHHHHHhccccc-------CCCceee------e-hhhhc------------------------
Confidence 985 77777777776665432220 0001111 1 11100
Q ss_pred HHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHH
Q 007929 234 ERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRV 313 (584)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v 313 (584)
.
T Consensus 188 -------------------------------------------------------------~------------------ 188 (415)
T COG5257 188 -------------------------------------------------------------A------------------ 188 (415)
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred HHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCC--------CCcee
Q 007929 314 MQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD--------KGRFF 385 (584)
Q Consensus 314 ~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~--------~g~~l 385 (584)
.+..|+++|.+++|.|.. |.+.|...||.+.|.-.. .|. +
T Consensus 189 ------NIDal~e~i~~~IptP~r-------------------------d~~~~p~m~v~RSFDVNkPGt~~~~L~GG-V 236 (415)
T COG5257 189 ------NIDALIEAIEKYIPTPER-------------------------DLDKPPRMYVARSFDVNKPGTPPEELKGG-V 236 (415)
T ss_pred ------CHHHHHHHHHHhCCCCcc-------------------------CCCCCceEEEEeecccCCCCCCHHHccCc-e
Confidence 026789999999999952 567888888888775322 245 6
Q ss_pred EEEEeEeeeeecCcEEEEcCCCC-CCCCcccc--ceeeeceEEEEecCCccccCcccCCCEEEE-EccCcccccceEecc
Q 007929 386 AFGRVFSGKVATGLKVRIMGPNY-VPGEKKDL--YVKSVQRTVIWMGKKQETVEDVPCGNTVAM-VGLDQYITKNATLTN 461 (584)
Q Consensus 386 ~~~RV~sGtLk~g~~v~v~~~n~-~~~~~e~~--~~~ki~~l~~~~g~~~~~v~ea~AGdIvav-~gl~~~~~~tgTl~~ 461 (584)
.=+-+.+|.|+.||++.+.+.-. +.+.+-.. ...+|.+|+ .....+++|.+|-.++| ++|+.+.+|...|+.
T Consensus 237 iGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~----ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G 312 (415)
T COG5257 237 IGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQ----AGGEDVEEARPGGLVGVGTKLDPTLTKADALVG 312 (415)
T ss_pred ecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEE----eCCeeeeeccCCceEEEecccCcchhhhhhhcc
Confidence 77888999999999999754321 11111000 012333333 34478999999999988 467665444433322
Q ss_pred CCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEecChhhHHHHHHHHHHhh
Q 007929 462 EKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDF 541 (584)
Q Consensus 462 ~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLe~~l~rL~~~f 541 (584)
.= ... +=..| +...++.++-. -|.|+.-.+-.++++--.++|.++.-.|..---=++...+..
T Consensus 313 ~V----~G~-pG~lP-pv~~~~~ie~~----------LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k~d- 375 (415)
T COG5257 313 QV----VGK-PGTLP-PVWTSIRIEYH----------LLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAKKD- 375 (415)
T ss_pred cc----ccC-CCCCC-CceEEEEEEee----------ehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEecCc-
Confidence 10 011 11233 33444455532 244555555566665447888888877764322222233333
Q ss_pred CCCceEEEcCcEE
Q 007929 542 MGGAEIIKSDPVV 554 (584)
Q Consensus 542 ~~~v~v~~~~p~V 554 (584)
-++|.+..|.-
T Consensus 376 --~~ev~Lk~Pvc 386 (415)
T COG5257 376 --EIEVKLKRPVC 386 (415)
T ss_pred --eEEEEecccee
Confidence 36666666643
No 64
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.9e-23 Score=215.67 Aligned_cols=306 Identities=21% Similarity=0.313 Sum_probs=210.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.|--.|-| +||+|||||||+++| ....+....+| |||...+.+++...
T Consensus 151 ~RpPVVTi---MGHVDHGKTTLLD~l--Rks~VAA~E~G--------------GITQhIGAF~V~~p------------- 198 (683)
T KOG1145|consen 151 PRPPVVTI---MGHVDHGKTTLLDAL--RKSSVAAGEAG--------------GITQHIGAFTVTLP------------- 198 (683)
T ss_pred CCCCeEEE---eecccCChhhHHHHH--hhCceehhhcC--------------CccceeceEEEecC-------------
Confidence 35556777 999999999999999 22223333334 68888887777665
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 165 (584)
++.+++|+|||||.-|..+..++.+.+|.++|||.|.+|+.+||.+.+..+...++|+|+++||+|++ +.+|+.
T Consensus 199 --~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp----~a~pek 272 (683)
T KOG1145|consen 199 --SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP----GANPEK 272 (683)
T ss_pred --CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC----CCCHHH
Confidence 27999999999999999999999999999999999999999999999999999999999999999998 556653
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcC
Q 007929 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~ 245 (584)
++..+-.. --.+..++ |++++.|. |++.|-+
T Consensus 273 v~~eL~~~----gi~~E~~G----GdVQvipi-------SAl~g~n---------------------------------- 303 (683)
T KOG1145|consen 273 VKRELLSQ----GIVVEDLG----GDVQVIPI-------SALTGEN---------------------------------- 303 (683)
T ss_pred HHHHHHHc----CccHHHcC----CceeEEEe-------ecccCCC----------------------------------
Confidence 33222110 00111111 34443331 2222110
Q ss_pred CCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHH
Q 007929 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (584)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LL 325 (584)
+ ..|.|++. -. ..+|
T Consensus 304 -------------l------------~~L~eail-----------l~-----------------------------Ae~m 318 (683)
T KOG1145|consen 304 -------------L------------DLLEEAIL-----------LL-----------------------------AEVM 318 (683)
T ss_pred -------------h------------HHHHHHHH-----------HH-----------------------------HHHh
Confidence 0 01111100 00 1112
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcC
Q 007929 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (584)
Q Consensus 326 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~ 405 (584)
| .+.+|.+|+-+.|.-..-|+..|. ++.+=|-.|||++|+.|.. |
T Consensus 319 d---------------------------------LkA~p~g~~eg~VIES~vdkg~G~-~aT~iVkrGTLkKG~vlV~-G 363 (683)
T KOG1145|consen 319 D---------------------------------LKADPKGPAEGWVIESSVDKGRGP-VATVIVKRGTLKKGSVLVA-G 363 (683)
T ss_pred h---------------------------------cccCCCCCceEEEEEeeecCCccc-eeEEEEeccccccccEEEE-e
Confidence 1 123678999999988888899999 9999999999999999873 2
Q ss_pred CCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce--EeccCCC-----------------C-
Q 007929 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA--TLTNEKE-----------------V- 465 (584)
Q Consensus 406 ~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg--Tl~~~~~-----------------~- 465 (584)
. . -.||..|+-..| .++++|.+|.-+-|.|.++. ...| .+--.++ .
T Consensus 364 ~------~----w~KVr~l~D~nG---k~i~~A~Ps~pv~V~Gwkdl-P~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~ 429 (683)
T KOG1145|consen 364 K------S----WCKVRALFDHNG---KPIDEATPSQPVEVLGWKDL-PIAGDEVLEVESEDRARKVLSKRKDESEQEKI 429 (683)
T ss_pred c------h----hhhhhhhhhcCC---CCccccCCCCceEeecccCC-CCCCceEEEEecHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 147777776666 67999999999999999986 3344 2221110 0
Q ss_pred ---------------------Ccccc-----ccccc-CCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEE
Q 007929 466 ---------------------DAHPI-----RAMKF-SVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVC 512 (584)
Q Consensus 466 ---------------------~~~~~-----~~~~~-~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v 512 (584)
..... ..+.. +..|.+++-|.-...+-.+.+.++|.-|..+--.+.+
T Consensus 430 ~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~~~v~l~~ 503 (683)
T KOG1145|consen 430 SRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNSEQVKLNV 503 (683)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEecccchHHHHHHHHhhcCCCceEEEE
Confidence 00000 01111 2368999999999999999999999998866666655
No 65
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.5e-22 Score=207.64 Aligned_cols=111 Identities=35% Similarity=0.355 Sum_probs=102.8
Q ss_pred ccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCceeEEEeC
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD 96 (584)
+||.+||||||+.++- ...+|..++|++||+|++.+...+... ++.+.|||
T Consensus 6 ~GhidHgkT~L~~alt-------------g~~~d~l~EekKRG~TiDlg~~y~~~~----------------d~~~~fID 56 (447)
T COG3276 6 AGHIDHGKTTLLKALT-------------GGVTDRLPEEKKRGITIDLGFYYRKLE----------------DGVMGFID 56 (447)
T ss_pred eeeeeccchhhhhhhc-------------ccccccchhhhhcCceEeeeeEeccCC----------------CCceEEee
Confidence 9999999999999992 257899999999999999998777666 67999999
Q ss_pred CCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCcccc
Q 007929 97 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCF 156 (584)
Q Consensus 97 TPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~~ 156 (584)
+|||++|+..+..++...|.|++|||+.+|+.+||.+++..+.-.+++. ++|+||+|+..
T Consensus 57 vpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d 117 (447)
T COG3276 57 VPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVD 117 (447)
T ss_pred CCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEecccccc
Confidence 9999999999999999999999999999999999999999988889997 79999999984
No 66
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.90 E-value=7.6e-23 Score=204.28 Aligned_cols=300 Identities=22% Similarity=0.318 Sum_probs=212.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhh-hhccccc-
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAA-LKSYRGE- 84 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~-~~~~~~~- 84 (584)
.++.|+. +||+|||||||+.+| .+|..+....+...++|..++|.+||.|-+.+..-+.|....+. ++.+...
T Consensus 116 ~hv~Vg~---aGhVdhGKSTlvG~L--vtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 116 EHVLVGV---AGHVDHGKSTLVGVL--VTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred ceEEEEE---eccccCCcceEEEEE--EecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence 4567777 999999999999999 44544332222457899999999999999999888888754322 1222111
Q ss_pred -----CCCCceeEEEeCCCCCCCchHHHHHHh--hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccc
Q 007929 85 -----RQGNEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL 157 (584)
Q Consensus 85 -----~~~~~~~inliDTPG~~df~~e~~~~l--~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~ 157 (584)
.+..+..+.|+||-||+.+...+++++ +..|..+++|.|.+|++..|++++..+....+|+|++++|+|+.
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~-- 268 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV-- 268 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC--
Confidence 133467899999999999999999999 57899999999999999999999999999999999999999998
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhh
Q 007929 158 ELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLW 237 (584)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~ 237 (584)
++ .+++.+++++...|...+ . +|+--... |...+.+..-
T Consensus 269 -----~d---dr~~~v~~ei~~~Lk~v~-----R---------ip~~vk~~-------------------~d~v~aa~a~ 307 (527)
T COG5258 269 -----PD---DRFQGVVEEISALLKRVG-----R---------IPLIVKDT-------------------DDVVLAAKAM 307 (527)
T ss_pred -----cH---HHHHHHHHHHHHHHHHhc-----c---------cceeeecc-------------------chhHHhhhhh
Confidence 44 678888888888875321 1 22110000 0000000000
Q ss_pred cCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhh
Q 007929 238 GENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTW 317 (584)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~ 317 (584)
+.+ +.+
T Consensus 308 -------k~~-------------------------------------------------------------------~~v 313 (527)
T COG5258 308 -------KAG-------------------------------------------------------------------RGV 313 (527)
T ss_pred -------hcC-------------------------------------------------------------------Cce
Confidence 000 012
Q ss_pred ccc---------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEE
Q 007929 318 LPA---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFG 388 (584)
Q Consensus 318 ~P~---------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~ 388 (584)
+|+ --.||+-+...||.-.. .++.+||.+||.|+|.-...|. +.-+
T Consensus 314 vPi~~tSsVTg~GldlL~e~f~~Lp~rr~------------------------~~d~g~flmYId~iYsVtGVGt-VvsG 368 (527)
T COG5258 314 VPIFYTSSVTGEGLDLLDEFFLLLPKRRR------------------------WDDEGPFLMYIDKIYSVTGVGT-VVSG 368 (527)
T ss_pred EEEEEEecccCccHHHHHHHHHhCCcccc------------------------cCCCCCeEEEEEeeEEEeeeEE-EEee
Confidence 222 14566667777776531 1457999999999999999999 9999
Q ss_pred EeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--ccCcccccce-EeccC
Q 007929 389 RVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNE 462 (584)
Q Consensus 389 RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--gl~~~~~~tg-Tl~~~ 462 (584)
-|-||.|+.||+|++ ||+.... ++..+|++|- .....|++|.||+|+.++ |++.--..-| .|+..
T Consensus 369 sV~~G~l~~gd~vll-GP~~~G~----fr~v~vkSIe----mh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 369 SVKSGILHVGDTVLL-GPFKDGK----FREVVVKSIE----MHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred eEEeeeeccCCEEEE-ccCCCCc----EEEEEEEEEE----EeeEEeccccCCcEEEEEecccCHHHHhcceEecCC
Confidence 999999999999985 5553322 3446777776 345789999999997764 6554223556 55553
No 67
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.89 E-value=1.2e-21 Score=216.84 Aligned_cols=64 Identities=31% Similarity=0.391 Sum_probs=61.0
Q ss_pred EEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 92 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 92 inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++|||||||.+|...+.++++.+|++++|+|+.+|+..+|...+..+...++|+++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 7999999999999999999999999999999999999999999998888899999999999985
No 68
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-21 Score=206.52 Aligned_cols=117 Identities=28% Similarity=0.341 Sum_probs=101.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
|..-|+| +||+|||||||++.+ ....+....+| |||.......+.+..
T Consensus 4 R~PvVti---mGHVDHGKTtLLD~I--R~t~Va~~EaG--------------GITQhIGA~~v~~~~------------- 51 (509)
T COG0532 4 RPPVVTI---MGHVDHGKTTLLDKI--RKTNVAAGEAG--------------GITQHIGAYQVPLDV------------- 51 (509)
T ss_pred CCCEEEE---eCcccCCccchhhhH--hcCccccccCC--------------ceeeEeeeEEEEecc-------------
Confidence 4567888 999999999999999 33334444444 688888888777641
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
.+...|+|||||||.-|+....++.+.+|.|+||||+.+|+.+||.+.+..+.+.++|+++++||||++
T Consensus 52 ~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~ 120 (509)
T COG0532 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKP 120 (509)
T ss_pred CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCC
Confidence 025789999999999999999999999999999999999999999999999999999999999999999
No 69
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=8.4e-22 Score=198.17 Aligned_cols=288 Identities=19% Similarity=0.250 Sum_probs=204.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCcccccc----------CC-----CeeeeCChhhHhhhccceecceEEEE
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRQDEAERGITIKSTGISLY 70 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~r~~Ti~~~~~~~~ 70 (584)
..++++.+ +||+++||||+-..+++..|.++.+. .+ -+|++|...+|+++|-|+......|+
T Consensus 77 k~hvn~vf---ighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 77 KEHVNAVF---IGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCceEEE---EEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 46789999 99999999999999999999988762 11 26899999999999999999999998
Q ss_pred eecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCC
Q 007929 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (584)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-------~~~~t~~~l~~~~~~~~ 143 (584)
.. ..+++++|+|||..|..+++.++.+||.+++|++|+.| -..||+++...+...++
T Consensus 154 te----------------~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv 217 (501)
T KOG0459|consen 154 TE----------------NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV 217 (501)
T ss_pred ec----------------ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc
Confidence 88 78999999999999999999999999999999999765 35699999888888888
Q ss_pred c-eEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhh
Q 007929 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (584)
Q Consensus 144 p-~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~ 222 (584)
. .|+++||||-+.- ++...+|.++.+.+...|...+..+..+..+ +|+ |+..|..
T Consensus 218 ~~lVv~vNKMddPtv------nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f------~p~-sg~tG~~----------- 273 (501)
T KOG0459|consen 218 KHLIVLINKMDDPTV------NWSNERYEECKEKLQPFLRKLGFNPKPDKHF------VPV-SGLTGAN----------- 273 (501)
T ss_pred ceEEEEEEeccCCcc------CcchhhHHHHHHHHHHHHHHhcccCCCCcee------eec-ccccccc-----------
Confidence 7 5689999999853 2334677777777766664211111111222 222 3322211
Q ss_pred hhcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHH
Q 007929 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (584)
Q Consensus 223 ~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~ 302 (584)
+..... .. .|.|. +
T Consensus 274 ------~k~~~~---------------------------s~-----cpwy~------------------g---------- 287 (501)
T KOG0459|consen 274 ------VKDRTD---------------------------SV-----CPWYK------------------G---------- 287 (501)
T ss_pred ------hhhccc---------------------------cc-----CCccc------------------C----------
Confidence 000000 00 00110 0
Q ss_pred HHhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCC
Q 007929 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (584)
Q Consensus 303 ~~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g 382 (584)
..+|..+.+ +|++.. +.++|+..-|..=+ .+.|
T Consensus 288 -------------------p~fl~~ld~-l~~~~R-------------------------~~~GP~~~pI~~Ky--kdmG 320 (501)
T KOG0459|consen 288 -------------------PIFLEYLDE-LPHLER-------------------------ILNGPIRCPVANKY--KDMG 320 (501)
T ss_pred -------------------Cccceehhc-cCcccc-------------------------cCCCCEEeehhhhc--cccc
Confidence 111222222 454421 45799888775433 3568
Q ss_pred ceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--ccCcccccce-Ee
Q 007929 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TL 459 (584)
Q Consensus 383 ~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--gl~~~~~~tg-Tl 459 (584)
+ +.+++|-||++++||.+.+++.+. . ..|.+|| .+-.+++.+.+||.+-+. |++.--...| .|
T Consensus 321 T-vv~GKvEsGsi~kg~~lvvMPnk~----~-----veV~~I~----~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL 386 (501)
T KOG0459|consen 321 T-VVGGKVESGSIKKGQQLVVMPNKT----N-----VEVLGIY----SDDVETDRVAPGENVKLRLKGIEEEDISPGFIL 386 (501)
T ss_pred e-EEEEEecccceecCCeEEEccCCc----c-----eEEEEEe----cccceeeeccCCcceEEEecccchhhccCceEE
Confidence 8 999999999999999999987431 1 3677777 668999999999998774 6655434567 88
Q ss_pred ccCC
Q 007929 460 TNEK 463 (584)
Q Consensus 460 ~~~~ 463 (584)
|++.
T Consensus 387 ~~~~ 390 (501)
T KOG0459|consen 387 CSPN 390 (501)
T ss_pred ecCC
Confidence 8876
No 70
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1e-20 Score=186.55 Aligned_cols=128 Identities=24% Similarity=0.311 Sum_probs=105.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
+++.| +||+|||||||+.+|-.. +.+...|..+...+||+|.+.....+....+ ..-.++.
T Consensus 8 ~N~Gi---LGHvDSGKTtLarals~~---------~STaAFDk~pqS~eRgiTLDLGFS~~~v~~p-------arLpq~e 68 (522)
T KOG0461|consen 8 LNLGI---LGHVDSGKTTLARALSEL---------GSTAAFDKHPQSTERGITLDLGFSTMTVLSP-------ARLPQGE 68 (522)
T ss_pred eeeee---EeeccCchHHHHHHHHhh---------ccchhhccCCcccccceeEeecceeeecccc-------cccCccc
Confidence 67777 999999999999999432 2246678899999999999988766654321 1112344
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
...++++|||||..++..++.+..+.|.+++|||+..|.+.||.+.+-.......+.++|+||+|..
T Consensus 69 ~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~l 135 (522)
T KOG0461|consen 69 QLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVL 135 (522)
T ss_pred cceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccc
Confidence 5788999999999999999999999999999999999999999999877655666789999999987
No 71
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=9.9e-21 Score=182.41 Aligned_cols=128 Identities=36% Similarity=0.596 Sum_probs=114.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+|++ +|++|+|||||+++|++..+.+........+.+|..+.|..+|+|+......+.++
T Consensus 3 r~i~i---vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~---------------- 63 (194)
T cd01891 3 RNIAI---IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK---------------- 63 (194)
T ss_pred cEEEE---EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC----------------
Confidence 47888 99999999999999998877766544323477899999999999999988888887
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++++++||||||.+|...+..+++.+|++++|+|++++...++..++..+...++|+++++||+|+.
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP 130 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 7999999999999999999999999999999999999988888888888777899999999999997
No 72
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=4.4e-19 Score=195.63 Aligned_cols=130 Identities=24% Similarity=0.232 Sum_probs=89.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcc--ccc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY--RGE 84 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~--~~~ 84 (584)
|.-.|+| +||+|||||||+++|.+..-. ...+ .++|.......+.+.......... ...
T Consensus 3 r~piV~I---iG~~d~GKTSLln~l~~~~v~--~~e~--------------ggiTq~iG~~~v~~~~~~~~~~~~~~~~~ 63 (590)
T TIGR00491 3 RSPIVSV---LGHVDHGKTTLLDKIRGSAVA--KREA--------------GGITQHIGATEIPMDVIEGICGDLLKKFK 63 (590)
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhccccc--cccC--------------CceecccCeeEeeeccccccccccccccc
Confidence 3446788 999999999999999754221 1112 224433333222222000000000 000
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
.+.+...++|||||||.+|...+.++++.+|++++|+|+.+|+..+|...+..+...++|+++++||+|+.
T Consensus 64 v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 64 IRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred cccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 00111348999999999999999999999999999999999999999999988888899999999999996
No 73
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.84 E-value=2.9e-21 Score=155.56 Aligned_cols=74 Identities=42% Similarity=0.706 Sum_probs=68.6
Q ss_pred cCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcC
Q 007929 475 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 551 (584)
Q Consensus 475 ~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~ 551 (584)
|| +|+++++|+|.+++|++||.+||++|++|||+|.+.++ +|||++|+||||+|||++++||+++| |++|++++
T Consensus 1 ~p-~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~--~v~v~~~~ 75 (75)
T PF14492_consen 1 FP-PPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF--GVEVEFGK 75 (75)
T ss_dssp SS-S-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT--CEBEEEE-
T ss_pred CC-CCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH--CCeeEecC
Confidence 45 89999999999999999999999999999999999995 89999999999999999999999999 99999874
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.84 E-value=5.9e-20 Score=174.11 Aligned_cols=131 Identities=39% Similarity=0.586 Sum_probs=114.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|++|+|||||+++|++..|.+.+.... ..+.|..+.|+++|+|.....+.+.|.. .+.++
T Consensus 2 ni~~---vG~~~~GKssL~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~t~~~~~~~~~~~~-----------~~~~~ 66 (179)
T cd01890 2 NFSI---IAHIDHGKSTLADRLLELTGTVSKREMK-EQVLDSMDLERERGITIKAQTVRLNYKA-----------KDGQE 66 (179)
T ss_pred cEEE---EeecCCCHHHHHHHHHHHhCCCCcCCCc-eEeccCChhHHHCCCeEecceEEEEEec-----------CCCCc
Confidence 6888 9999999999999999998887664332 5788999999999999998887777741 12347
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+.++|||||||.+|...+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 67 YLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred EEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 889999999999999999999999999999999999998889888888777889999999999986
No 75
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=8.9e-20 Score=177.05 Aligned_cols=131 Identities=24% Similarity=0.199 Sum_probs=102.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecch------hhh----
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD------AAL---- 78 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~------~~~---- 78 (584)
++|++ +||.|||||||+++|. ...+|..++|.+||+|+..+...+.|.... +..
T Consensus 1 ~~i~~---~g~~~~GKttL~~~l~-------------~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (203)
T cd01888 1 INIGT---IGHVAHGKSTLVKALS-------------GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSK 64 (203)
T ss_pred CEEEE---ECCCCCCHHHHHHHHh-------------CCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccc
Confidence 47888 9999999999999992 134788999999999999998888775110 000
Q ss_pred -hcccccCC------CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCCc-eEEEE
Q 007929 79 -KSYRGERQ------GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PVLTV 149 (584)
Q Consensus 79 -~~~~~~~~------~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-~~~~t~~~l~~~~~~~~p-~ivvi 149 (584)
........ ...++++|||||||.+|..++..+++.+|++++|+|+.++ ...++...|..+...+++ +++|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivv 144 (203)
T cd01888 65 EDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQ 144 (203)
T ss_pred cccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEE
Confidence 00000011 1238899999999999999999999999999999999984 678888888877666764 67899
Q ss_pred ecCccc
Q 007929 150 NKMDRC 155 (584)
Q Consensus 150 NK~D~~ 155 (584)
||+|+.
T Consensus 145 NK~Dl~ 150 (203)
T cd01888 145 NKIDLV 150 (203)
T ss_pred Echhcc
Confidence 999997
No 76
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.81 E-value=1.5e-19 Score=177.54 Aligned_cols=157 Identities=23% Similarity=0.237 Sum_probs=119.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCC-CeeeeCChhhHhhhccceecceEEEEeecchhhhhcc-------
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY------- 81 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g-~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~------- 81 (584)
+|++ +||.++|||||+++|.. +.... +.| ....+|.+.+|.+||+|+..+...+.+......++..
T Consensus 1 ~v~~---~G~~~~GKttl~~~~~~--~~~~~-~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~ 74 (224)
T cd04165 1 RVAV---VGNVDAGKSTLLGVLTQ--GELDN-GRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSES 74 (224)
T ss_pred CEEE---ECCCCCCHHHHHHHHHh--CCcCC-CCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccc
Confidence 3667 99999999999999964 33332 333 3457899999999999987766555444221111100
Q ss_pred -cccCCCCceeEEEeCCCCCCCchHHHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccccc
Q 007929 82 -RGERQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLE 158 (584)
Q Consensus 82 -~~~~~~~~~~inliDTPG~~df~~e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~ 158 (584)
......+++.++++|||||.+|..++.+++. .+|++++|||+.+|...++.+++..+...++|+++++||+|+..
T Consensus 75 ~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~-- 152 (224)
T cd04165 75 DIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP-- 152 (224)
T ss_pred cceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC--
Confidence 0111234789999999999999999999986 79999999999999999999999999999999999999999863
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHh
Q 007929 159 LQVDGEEAYQTFQKVIENANVIMA 182 (584)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~v~~~l~ 182 (584)
. ..+.+.++++...+.
T Consensus 153 ----~----~~~~~~~~~l~~~L~ 168 (224)
T cd04165 153 ----A----NILQETLKDLKRILK 168 (224)
T ss_pred ----H----HHHHHHHHHHHHHhc
Confidence 1 457777777777663
No 77
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.81 E-value=4.3e-19 Score=170.67 Aligned_cols=133 Identities=25% Similarity=0.303 Sum_probs=107.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +||+|+|||||+++|+...+ ...+|...+|++||+|++....++.|.... ...........
T Consensus 1 ~~i~i---~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~--~~~~~~~~~~~ 66 (192)
T cd01889 1 VNVGV---LGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPK--HLRELINPGEE 66 (192)
T ss_pred CeEEE---EecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEecccc--ccccccccccc
Confidence 47888 99999999999999976422 356788899999999999998888776211 00001112234
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+++||||||.+|..++..+++.+|++++|+|+.+|.+.++...+..+...++|+++++||+|+.
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 7899999999999999999999999999999999999999998877776666688999999999997
No 78
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.77 E-value=1.1e-17 Score=159.51 Aligned_cols=128 Identities=40% Similarity=0.543 Sum_probs=110.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|..|+|||||+++|+..............+.++....|..+++|+......+.+. +
T Consensus 1 ~v~v---~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~ 61 (189)
T cd00881 1 NVGI---AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP----------------D 61 (189)
T ss_pred CEEE---EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC----------------C
Confidence 4778 99999999999999998877665544333356778888999999998877777776 7
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
..++||||||+.+|......+++.+|++++|+|+.++...+....+..+...++|+++++||+|+..
T Consensus 62 ~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 8999999999999999999999999999999999999988888888887777899999999999973
No 79
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.75 E-value=2.7e-16 Score=181.30 Aligned_cols=125 Identities=22% Similarity=0.169 Sum_probs=90.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc--CCC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE--RQG 87 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~--~~~ 87 (584)
.||-|+ ++| ||||+++|-.. . -+++..+|||...+...+.+............. ...
T Consensus 465 ~~~~~~-~~~----KTtLLD~iR~t--~--------------v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~ 523 (1049)
T PRK14845 465 FIANGI-LVH----NTTLLDKIRKT--R--------------VAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEI 523 (1049)
T ss_pred ceeeee-ecc----cccHHHHHhCC--C--------------cccccCCCceeccceEEEEecccccccccccccccccC
Confidence 344455 555 99999999211 1 133445689999888777665211000000000 001
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+-..++|||||||.+|.....++.+.+|++++|+|+.+|++.||..++..+...++|+++++||+|+.
T Consensus 524 ~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 524 KIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred CcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 12248999999999999988889999999999999999999999999999888899999999999996
No 80
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.75 E-value=8.1e-18 Score=142.25 Aligned_cols=94 Identities=37% Similarity=0.681 Sum_probs=80.0
Q ss_pred eEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 368 l~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
++++|||+..+|+.|.+++|+|||||+|++||.|++++++.+.+.+++...++|++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 57999999999997555999999999999999999887654433222334479999999999999999999999999999
Q ss_pred ccCcccccceEecc
Q 007929 448 GLDQYITKNATLTN 461 (584)
Q Consensus 448 gl~~~~~~tgTl~~ 461 (584)
|+++.+++.+|+++
T Consensus 81 gl~~~~~~~~t~~~ 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CcchheeceEEecC
Confidence 99999888888863
No 81
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.74 E-value=8.8e-18 Score=139.13 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=73.9
Q ss_pred CCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEE
Q 007929 366 GPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA 445 (584)
Q Consensus 366 ~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIva 445 (584)
+||+++|||+.+|++.|+ ++|+|||||+|++|+.|++. + +.+ +++++||.++|.+..++++|.|||||+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~-la~~RV~sG~l~~g~~v~~~----~-~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~a 70 (85)
T cd03690 2 SELSGTVFKIERDDKGER-LAYLRLYSGTLRLRDSVRVN----R-EEK-----IKITELRVFNNGEVVTADTVTAGDIAI 70 (85)
T ss_pred CCcEEEEEEeEECCCCCe-EEEEEEccCEEcCCCEEEeC----C-CcE-----EEeceeEEEeCCCeEECcEECCCCEEE
Confidence 799999999999999998 99999999999999999843 3 233 589999999999999999999999999
Q ss_pred EEccCcccccce-Eec
Q 007929 446 MVGLDQYITKNA-TLT 460 (584)
Q Consensus 446 v~gl~~~~~~tg-Tl~ 460 (584)
+.|++++ .+| ||+
T Consensus 71 i~gl~~~--~~Gdtl~ 84 (85)
T cd03690 71 LTGLKGL--RVGDVLG 84 (85)
T ss_pred EECCCCC--cCccccC
Confidence 9999986 778 775
No 82
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.70 E-value=7.9e-17 Score=133.05 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=72.7
Q ss_pred eEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 368 l~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
|+|+|||++++++.|+ ++|+|||||+|++||.|++.+ .+.+ +++++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~d~~~g~-i~~~Ri~sGtl~~g~~v~~~~----~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 1 LCALAFKVVHDPQRGP-LTFVRVYSGTLKRGSALYNTN----TGKK-----ERISRLLQPFADQYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CEEEEEecccCCCCCe-EEEEEEecCEECCCCEEEECC----CCCE-----EEeeEEEEEECCCceECCeeCCCCEEEEE
Confidence 5799999999999888 999999999999999999543 2333 58999999999999999999999999999
Q ss_pred ccCcccccce-Eecc
Q 007929 448 GLDQYITKNA-TLTN 461 (584)
Q Consensus 448 gl~~~~~~tg-Tl~~ 461 (584)
|++++ ++| |||.
T Consensus 71 gl~~~--~~Gdtl~~ 83 (83)
T cd04092 71 GLKQT--RTGDTLVT 83 (83)
T ss_pred CCCCc--ccCCEEeC
Confidence 99986 788 8763
No 83
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.69 E-value=2.8e-16 Score=146.13 Aligned_cols=115 Identities=30% Similarity=0.291 Sum_probs=92.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|++ +|++|+|||||+++|... ..+..+.|..+++|+......+.+. . +
T Consensus 2 ~i~i---~G~~~~GKssl~~~l~~~-------------~~~~~~~~~~~~~t~~~~~~~~~~~--------------~-~ 50 (164)
T cd04171 2 IIGT---AGHIDHGKTTLIKALTGI-------------ETDRLPEEKKRGITIDLGFAYLDLP--------------S-G 50 (164)
T ss_pred EEEE---EecCCCCHHHHHHHHhCc-------------ccccchhhhccCceEEeeeEEEEec--------------C-C
Confidence 5677 999999999999999421 1233455666788888776555553 1 5
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC-ceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~-p~ivviNK~D~~ 155 (584)
..+++|||||+.+|...+..+++.+|++++|+|+.++...++...+..+...+. |+++++||+|+.
T Consensus 51 ~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred cEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 689999999999999888999999999999999999888888877766555566 788999999997
No 84
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=2.3e-16 Score=163.87 Aligned_cols=151 Identities=22% Similarity=0.283 Sum_probs=122.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++||| +|++|+|||||+|+|+.+.+.|....+| +|+++-...++|+
T Consensus 177 ~~ikiai---iGrPNvGKSsLiN~ilgeeR~Iv~~~aG---------------TTRD~I~~~~e~~-------------- 224 (444)
T COG1160 177 DPIKIAI---IGRPNVGKSSLINAILGEERVIVSDIAG---------------TTRDSIDIEFERD-------------- 224 (444)
T ss_pred CceEEEE---EeCCCCCchHHHHHhccCceEEecCCCC---------------ccccceeeeEEEC--------------
Confidence 4689999 9999999999999999999999888777 7888888888888
Q ss_pred CCceeEEEeCCCCCCC----------c-hHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVD----------F-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~d----------f-~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+.++.+|||+|... | ...+..|+..||.+++|+||.+|+..|..++...+.+.+.++++++||||+.
T Consensus 225 --~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~ 302 (444)
T COG1160 225 --GRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLV 302 (444)
T ss_pred --CeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 89999999999643 2 2346788999999999999999999999999999999999999999999987
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCccee
Q 007929 156 FLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWA 211 (584)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~ 211 (584)
.. . ...+.+..++++..| ..+.+.| +.|-|+.+|++
T Consensus 303 ~~-----~---~~~~~~~k~~i~~~l--------~~l~~a~----i~~iSA~~~~~ 338 (444)
T COG1160 303 EE-----D---EATMEEFKKKLRRKL--------PFLDFAP----IVFISALTGQG 338 (444)
T ss_pred Cc-----h---hhHHHHHHHHHHHHh--------ccccCCe----EEEEEecCCCC
Confidence 31 1 133444445555555 2223344 67778887775
No 85
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.66 E-value=2.9e-16 Score=129.89 Aligned_cols=80 Identities=28% Similarity=0.448 Sum_probs=71.3
Q ss_pred EEEEeeee---cCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE
Q 007929 370 LYVSKMIP---ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (584)
Q Consensus 370 ~~VfK~~~---~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav 446 (584)
|+|||+.. +|+.|+ ++|+|||||+|++||.|+. .+.+.+ +++++|+.++|.+..++++|.||||+++
T Consensus 1 ~~vfKv~~~~~~~~~Gk-la~~Rv~sG~l~~g~~v~~----~~~~~~-----~kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRDR-IAFVRVCSGKFERGMKVKH----VRLGKE-----VRLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCcE-EEEEEEECCEEcCCCEEEE----cCCCCE-----EEeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 58999999 999999 9999999999999999994 333433 5899999999999999999999999999
Q ss_pred EccCcccccce-Eecc
Q 007929 447 VGLDQYITKNA-TLTN 461 (584)
Q Consensus 447 ~gl~~~~~~tg-Tl~~ 461 (584)
.|++++ .+| |||+
T Consensus 71 ~gl~~~--~~Gdtl~~ 84 (85)
T cd03689 71 VNPGNF--QIGDTLTE 84 (85)
T ss_pred ECCCCc--cccCEeeC
Confidence 999986 788 8875
No 86
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.66 E-value=4.4e-16 Score=128.65 Aligned_cols=82 Identities=33% Similarity=0.456 Sum_probs=72.7
Q ss_pred eEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 368 l~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
|+|+|||+.++++.|+ ++|+|||||+|++||.|++.+ .+.+ +++.+|+.++|.+..+++++.|||||++.
T Consensus 1 ~~a~Vfk~~~d~~~G~-~~~~Rv~sG~l~~g~~v~~~~----~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 1 FVALVFKTIHDPFVGK-LSFVRVYSGTLKAGSTLYNST----KGKK-----ERVGRLLRMHGKKQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CEEEEEEcccCCCCce-EEEEEEecCEEcCCCEEEECC----CCcE-----EEeeEEEEEcCCCceECCEeCCCCEEEEE
Confidence 5799999999999898 999999999999999999653 2333 58999999999999999999999999999
Q ss_pred ccCcccccce-Eecc
Q 007929 448 GLDQYITKNA-TLTN 461 (584)
Q Consensus 448 gl~~~~~~tg-Tl~~ 461 (584)
|++++ .+| ||++
T Consensus 71 g~~~~--~~Gdtl~~ 83 (83)
T cd04088 71 GLKDT--ATGDTLCD 83 (83)
T ss_pred CCCCC--ccCCEeeC
Confidence 99986 788 7753
No 87
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=1.6e-15 Score=164.35 Aligned_cols=149 Identities=22% Similarity=0.277 Sum_probs=109.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|++....+.... .|+|.+.....+.+.
T Consensus 172 ~~~~v~i---vG~~n~GKStlin~ll~~~~~~~~~~---------------~gtt~~~~~~~~~~~-------------- 219 (435)
T PRK00093 172 EPIKIAI---IGRPNVGKSSLINALLGEERVIVSDI---------------AGTTRDSIDTPFERD-------------- 219 (435)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHhCCCceeecCC---------------CCceEEEEEEEEEEC--------------
Confidence 4589999 99999999999999987655443322 346666665566665
Q ss_pred CCceeEEEeCCCCCCCch-----------HHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~-----------~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+++|||||+.+.. ..+.++++.+|++|+|+|+.+|...++..+++++.+.++|+++++||||+.
T Consensus 220 --~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 220 --GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred --CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 7889999999975421 234568899999999999999999999999999888899999999999987
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCccee
Q 007929 156 FLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWA 211 (584)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~ 211 (584)
. . ...+++.++++..+. ..... .+.+.|+..|++
T Consensus 298 ~------~----~~~~~~~~~~~~~l~--------~~~~~----~i~~~SA~~~~g 331 (435)
T PRK00093 298 D------E----KTMEEFKKELRRRLP--------FLDYA----PIVFISALTGQG 331 (435)
T ss_pred C------H----HHHHHHHHHHHHhcc--------cccCC----CEEEEeCCCCCC
Confidence 2 1 223444444444441 11112 366778888875
No 88
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.65 E-value=7.5e-16 Score=126.54 Aligned_cols=80 Identities=25% Similarity=0.408 Sum_probs=70.6
Q ss_pred eEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 368 l~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
|+|+|||+.+|+. |+ ++|+|||||+|++||.|+.. +.+++ +++.+|+.++|.+..+++++.||||+++.
T Consensus 1 ~~a~vfK~~~~~~-G~-i~~~Rv~sG~lk~gd~v~~~----~~~~~-----~~v~~i~~~~g~~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 1 FVGLAFKLEEGRF-GQ-LTYMRIYQGKLKKGDTIYNV----RTGKK-----VRVPRLVRMHSNEMEEVEEAGAGDICAIF 69 (81)
T ss_pred CeEEEEEeecCCC-CC-EEEEEEecCEEcCCCEEEEc----CCCCE-----EEEeEEEEEeCCCceEccEECCCCEEEEE
Confidence 5799999999988 98 99999999999999999954 33444 68999999999999999999999999999
Q ss_pred ccCcccccce-Eecc
Q 007929 448 GLDQYITKNA-TLTN 461 (584)
Q Consensus 448 gl~~~~~~tg-Tl~~ 461 (584)
|++ + ++| ||++
T Consensus 70 g~~-~--~~Gdtl~~ 81 (81)
T cd04091 70 GID-C--ASGDTFTD 81 (81)
T ss_pred CCC-c--ccCCEecC
Confidence 997 5 788 8863
No 89
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.63 E-value=2.7e-15 Score=162.37 Aligned_cols=150 Identities=23% Similarity=0.274 Sum_probs=109.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|++..+.+.... .|+|.+.....+.+.
T Consensus 171 ~~~~v~i---vG~~~~GKSsLin~l~~~~~~~~~~~---------------~gtt~~~~~~~~~~~-------------- 218 (429)
T TIGR03594 171 GPIKIAI---IGRPNVGKSTLVNALLGEERVIVSDI---------------AGTTRDSIDIPFERN-------------- 218 (429)
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHCCCeeecCCC---------------CCceECcEeEEEEEC--------------
Confidence 4578999 99999999999999987654433322 346666655566665
Q ss_pred CCceeEEEeCCCCCCCchH-----------HHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSS-----------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~-----------e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+.+|||||+.++.. .+..+++.||++|+|+|+.+|...++..+++.+.+.++|+++|+||+|+.
T Consensus 219 --~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 219 --GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred --CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 67899999999865432 23567899999999999999999999999999888899999999999996
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCccee
Q 007929 156 FLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWA 211 (584)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~ 211 (584)
. +. ..+.++.++++..+. ..... .+.+.|+..|++
T Consensus 297 ~-----~~----~~~~~~~~~~~~~~~--------~~~~~----~vi~~SA~~g~~ 331 (429)
T TIGR03594 297 K-----DE----KTREEFKKELRRKLP--------FLDFA----PIVFISALTGQG 331 (429)
T ss_pred C-----CH----HHHHHHHHHHHHhcc--------cCCCC----ceEEEeCCCCCC
Confidence 1 11 234444455544441 11112 356678888775
No 90
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.63 E-value=1.9e-15 Score=127.58 Aligned_cols=90 Identities=50% Similarity=0.905 Sum_probs=73.1
Q ss_pred eEEEEEeeeecC-CCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE
Q 007929 368 LMLYVSKMIPAS-DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (584)
Q Consensus 368 l~~~VfK~~~~~-~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav 446 (584)
++++|||+..++ +.|+ ++|+|||||+|++|+.|++.+++.....++....+++++||.++|.+..++++|.|||||++
T Consensus 1 ~v~~v~Ki~~~~~~~g~-la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 1 LVMYVTKMVPTPDKGGF-IAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred CeEEEEeCeECCCCCEE-EEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 478999999999 6566 99999999999999999977644322111122236899999999999999999999999999
Q ss_pred EccCcccccceEec
Q 007929 447 VGLDQYITKNATLT 460 (584)
Q Consensus 447 ~gl~~~~~~tgTl~ 460 (584)
.|++++ ++|+++
T Consensus 80 ~g~~~~--~~g~~~ 91 (93)
T cd03700 80 VGLDQL--KSGTTA 91 (93)
T ss_pred ECCccC--ceEeEe
Confidence 999885 677554
No 91
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.62 E-value=1.6e-15 Score=151.33 Aligned_cols=310 Identities=18% Similarity=0.239 Sum_probs=201.7
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc---
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE--- 84 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~--- 84 (584)
.++|++ +|.+|+|||||+..| ..|.++.......+.+-.+++|.+.|-|.....--+.|..-....+++..+
T Consensus 133 E~RVAV---VGNVDAGKSTLLGVL--THgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463|consen 133 EARVAV---VGNVDAGKSTLLGVL--THGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred eEEEEE---EecccCCcceeEeee--eecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCc
Confidence 468899 999999999999988 344443321111345566788888888877766556665444444443322
Q ss_pred ------CCCCceeEEEeCCCCCCCchHHHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 85 ------RQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ------~~~~~~~inliDTPG~~df~~e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+.+....|+|||.+||+.|.+.+..++. ..|.+.++|.+..|+...|++++..++...+|+.+|++|+|..
T Consensus 208 LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC- 286 (641)
T KOG0463|consen 208 LDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC- 286 (641)
T ss_pred ccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccC-
Confidence 2344677999999999999999998885 6899999999999999999999999999999999999999998
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHh
Q 007929 157 LELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERL 236 (584)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~ 236 (584)
|. +-+++.+..+...+.+.+-. + .| |...|-.+ ...+
T Consensus 287 ------PA---NiLqEtmKll~rllkS~gcr---K---~P----vlVrs~DD-Vv~~----------------------- 323 (641)
T KOG0463|consen 287 ------PA---NILQETMKLLTRLLKSPGCR---K---LP----VLVRSMDD-VVHA----------------------- 323 (641)
T ss_pred ------cH---HHHHHHHHHHHHHhcCCCcc---c---Cc----EEEecccc-eEEe-----------------------
Confidence 44 45666666665555432111 0 11 22222110 0000
Q ss_pred hcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHh
Q 007929 237 WGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQT 316 (584)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~ 316 (584)
...|...-..|++++-. .+.+
T Consensus 324 -----------------------A~NF~Ser~CPIFQvSN--------------------VtG~---------------- 344 (641)
T KOG0463|consen 324 -----------------------AVNFPSERVCPIFQVSN--------------------VTGT---------------- 344 (641)
T ss_pred -----------------------eccCccccccceEEecc--------------------ccCC----------------
Confidence 00111111111111000 0111
Q ss_pred hccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeee
Q 007929 317 WLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVA 396 (584)
Q Consensus 317 ~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk 396 (584)
-..||.++.+.+|.-... ..+.|--.++-.+|+.|.+|. ++-+..++|+|+
T Consensus 345 ----NL~LLkmFLNlls~R~~~------------------------~E~~PAeFQIDD~Y~VpGVGT-vvSGT~L~GtIr 395 (641)
T KOG0463|consen 345 ----NLPLLKMFLNLLSLRRQL------------------------NENDPAEFQIDDIYWVPGVGT-VVSGTLLSGTIR 395 (641)
T ss_pred ----ChHHHHHHHhhcCccccc------------------------ccCCCcceeecceEecCCcce-EeecceeeeeEE
Confidence 134677777776654321 234566678889999999999 999999999999
Q ss_pred cCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCE--EEEEccCcccccce-EeccCC
Q 007929 397 TGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNT--VAMVGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 397 ~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdI--vav~gl~~~~~~tg-Tl~~~~ 463 (584)
-+|.+. +||.... ++-...|+.|. +++.+|..+.+|+- .|+.+++....+-| .+.++.
T Consensus 396 LND~Ll-LGPd~~G----~F~pI~iKSIH----RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 396 LNDILL-LGPDSNG----DFMPIPIKSIH----RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred eccEEE-ecCCCCC----Ceeeeehhhhh----hccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 999986 5554322 22223455544 88899999999997 45556666545666 555554
No 92
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.61 E-value=4.4e-15 Score=138.81 Aligned_cols=114 Identities=26% Similarity=0.295 Sum_probs=87.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|++ +|+.|+|||||+++|....-.. ...+++|.......+.+. ...+
T Consensus 2 ~i~i---iG~~~~GKtsli~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~-------------~~~~ 49 (168)
T cd01887 2 VVTV---MGHVDHGKTTLLDKIRKTNVAA----------------GEAGGITQHIGAFEVPAE-------------VLKI 49 (168)
T ss_pred EEEE---EecCCCCHHHHHHHHHhccccc----------------ccCCCeEEeeccEEEecc-------------cCCc
Confidence 3777 9999999999999996422110 012234444433333332 0126
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+.+++|||||+.+|......+++.+|++++|+|+.++...++...+..+...++|+++++||+|+.
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 50 PGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred ceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 789999999999998888889999999999999999988888888888777899999999999987
No 93
>PRK15494 era GTPase Era; Provisional
Probab=99.60 E-value=3.4e-14 Score=148.31 Aligned_cols=115 Identities=23% Similarity=0.282 Sum_probs=83.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|++|+|||||+++|++....+..... +.|.......+.+.
T Consensus 51 k~~kV~i---vG~~nvGKSTLin~l~~~k~~ivs~k~---------------~tTr~~~~~~~~~~-------------- 98 (339)
T PRK15494 51 KTVSVCI---IGRPNSGKSTLLNRIIGEKLSIVTPKV---------------QTTRSIITGIITLK-------------- 98 (339)
T ss_pred ceeEEEE---EcCCCCCHHHHHHHHhCCceeeccCCC---------------CCccCcEEEEEEeC--------------
Confidence 5568999 999999999999999754332222211 23333333334444
Q ss_pred CCceeEEEeCCCCCCCc--------hHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df--------~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+++++||||||..+. ......+++.||++|+|+|+..+....+..++..+...+.|+++|+||+|+.
T Consensus 99 --~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 99 --DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred --CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 678999999998542 2223346789999999999998887777767776666788999999999986
No 94
>COG1159 Era GTPase [General function prediction only]
Probab=99.59 E-value=4.1e-14 Score=139.83 Aligned_cols=116 Identities=27% Similarity=0.253 Sum_probs=90.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.-.||| +|++|+|||||+|+|+++.-.|.++.+. .|...-..-+...
T Consensus 5 ksGfVaI---iGrPNvGKSTLlN~l~G~KisIvS~k~Q---------------TTR~~I~GI~t~~-------------- 52 (298)
T COG1159 5 KSGFVAI---IGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTRNRIRGIVTTD-------------- 52 (298)
T ss_pred eEEEEEE---EcCCCCcHHHHHHHHhcCceEeecCCcc---------------hhhhheeEEEEcC--------------
Confidence 4567899 9999999999999999887777665554 1222111112222
Q ss_pred CCceeEEEeCCCCCCC--------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~d--------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
++.+.|+||||.-. ....+..++..+|.+++|||+.++.....+.++..+...+.|+++++||+|+..
T Consensus 53 --~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 53 --NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred --CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 78999999999532 345567888999999999999999999999998887666789999999999874
No 95
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.59 E-value=6.4e-15 Score=122.53 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=72.3
Q ss_pred eEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 368 l~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
|.++|||+..+++.|+ ++|+|||||+|++||.|++.+++ +. ...+++++|+.++|.+..+++++.||||+++.
T Consensus 1 ~~~~vfk~~~d~~~g~-i~~~Rv~sG~l~~g~~v~~~~~~---~~---~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVGR-IAIGRIFRGTVKVGQQVAVVKRD---GK---IEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeEEEEEeEecCCCCe-EEEEEEEeCEEcCCCEEEEEcCC---CC---EEEEEEeeEeeeeCCCeeECcEECCCCEEEEE
Confidence 4689999999999898 99999999999999999976442 10 11258999999999999999999999999999
Q ss_pred ccCcccccce-Eec
Q 007929 448 GLDQYITKNA-TLT 460 (584)
Q Consensus 448 gl~~~~~~tg-Tl~ 460 (584)
|++++ .+| ||+
T Consensus 74 gl~~~--~~Gdtl~ 85 (86)
T cd03691 74 GIEDI--TIGDTIC 85 (86)
T ss_pred CCCCC--cccceec
Confidence 99886 677 775
No 96
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=1e-13 Score=151.40 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=89.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+.....+.... .|+|.+.....+.+.
T Consensus 210 ~~~kI~i---iG~~nvGKSSLin~l~~~~~~~~s~~---------------~gtT~d~~~~~~~~~-------------- 257 (472)
T PRK03003 210 GPRRVAL---VGKPNVGKSSLLNKLAGEERSVVDDV---------------AGTTVDPVDSLIELG-------------- 257 (472)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHhCCCcccccCC---------------CCccCCcceEEEEEC--------------
Confidence 3578999 99999999999999976544332222 245665555555565
Q ss_pred CCceeEEEeCCCCCC---------CchHHH--HHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHV---------DFSSEV--TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~---------df~~e~--~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+.||||||.. +|...+ ..+++.||++|+|+|++++...+...++..+...++|+++|+||+|+.
T Consensus 258 --~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 258 --GKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred --CEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 6788999999963 222222 346789999999999999999999988888888899999999999997
No 97
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.57 E-value=1e-13 Score=157.88 Aligned_cols=111 Identities=21% Similarity=0.243 Sum_probs=81.9
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|++|+|||||+|+|..... + .| + -.|.|++.....+.+.
T Consensus 3 ~~~IaL---vG~pNvGKSTLfN~Ltg~~~---~--vg-----n------~pGvTve~k~g~~~~~--------------- 48 (772)
T PRK09554 3 KLTIGL---IGNPNSGKTTLFNQLTGARQ---R--VG-----N------WAGVTVERKEGQFSTT--------------- 48 (772)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhCCCC---c--cC-----C------CCCceEeeEEEEEEcC---------------
Confidence 468999 99999999999999943211 1 11 1 1356776666666666
Q ss_pred CceeEEEeCCCCCCCchHH--------H--HHHh--hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSE--------V--TAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e--------~--~~~l--~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+++++++||||+.+|... . ...+ ..+|++++|+|+++... ....+.++.+.++|+++++||+|+.
T Consensus 49 -~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 49 -DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred -ceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhh
Confidence 789999999999988532 1 1222 36899999999988643 3345677778899999999999986
No 98
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.57 E-value=1.4e-14 Score=133.44 Aligned_cols=109 Identities=25% Similarity=0.231 Sum_probs=82.5
Q ss_pred ccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCceeEEEeC
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD 96 (584)
+|++|+|||||+++|+......... ..++|.........+. ++.+++||
T Consensus 3 ~G~~~~GKssl~~~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~----------------~~~~~i~D 51 (157)
T cd01894 3 VGRPNVGKSTLFNRLTGRRDAIVED---------------TPGVTRDRIYGEAEWG----------------GREFILID 51 (157)
T ss_pred cCCCCCCHHHHHHHHhCCcEEeecC---------------CCCceeCceeEEEEEC----------------CeEEEEEE
Confidence 8999999999999997432111111 1234444444444444 68899999
Q ss_pred CCCCCCchH--------HHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 97 SPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 97 TPG~~df~~--------e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
|||+.++.. +....++.+|++++|+|+..+.......+++.+.+.+.|+++++||+|+..
T Consensus 52 tpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 52 TGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 999998654 556778899999999999998888777777777777899999999999973
No 99
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.57 E-value=1.3e-14 Score=150.92 Aligned_cols=113 Identities=26% Similarity=0.237 Sum_probs=98.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
..|+| +|++|+|||||.|+|+.+.-+|....+| +|.+.......|.
T Consensus 4 ~~VAI---VGRPNVGKSTLFNRL~g~r~AIV~D~pG---------------vTRDr~y~~~~~~---------------- 49 (444)
T COG1160 4 PVVAI---VGRPNVGKSTLFNRLTGRRIAIVSDTPG---------------VTRDRIYGDAEWL---------------- 49 (444)
T ss_pred CEEEE---ECCCCCcHHHHHHHHhCCeeeEeecCCC---------------CccCCccceeEEc----------------
Confidence 56899 9999999999999998877777666565 7788888888898
Q ss_pred ceeEEEeCCCCCCCch---------HHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFS---------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~---------~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.|.+|||+|..+.. .++..|+..||++|+|||+.+|+.++++.+.+.+.+.++|+++|+||+|-.
T Consensus 50 ~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 50 GREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 7889999999987532 346789999999999999999999999999999887779999999999986
No 100
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.57 E-value=1.1e-14 Score=120.91 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=68.1
Q ss_pred eEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 368 l~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
|.++|||+..+++.|+ ++|+|||||+|++||.|++. +.+++ +++++|+ .++.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~-i~~~Rv~sG~l~~~~~v~~~----~~~~~-----~~i~~l~-~~~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGV-IALVRVFDGTLKKGDKIRFM----STGKE-----YEVEEVG-IFRPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCE-EEEEEEEcCEEcCCCEEEEe----cCCCe-----EEEEEEE-EECCCccCCceECCCCEEEEE
Confidence 5799999999999998 99999999999999999843 33333 5899999 458888999999999999996
Q ss_pred c----cCcccccce-Eecc
Q 007929 448 G----LDQYITKNA-TLTN 461 (584)
Q Consensus 448 g----l~~~~~~tg-Tl~~ 461 (584)
+ ++++ .+| ||++
T Consensus 70 ~g~~~l~~~--~~Gdtl~~ 86 (86)
T cd03699 70 AGIKTVKDA--RVGDTITL 86 (86)
T ss_pred ccccccCcc--ccccEeeC
Confidence 3 6655 678 8864
No 101
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.56 E-value=5.3e-14 Score=131.58 Aligned_cols=115 Identities=26% Similarity=0.328 Sum_probs=85.4
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|++|+|||||+++|+.....+... .++.|.......+.+.
T Consensus 2 ~~~i~i---~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~--------------- 48 (174)
T cd01895 2 PIRIAI---IGRPNVGKSSLVNALLGEERVIVSD---------------IAGTTRDSIDVPFEYD--------------- 48 (174)
T ss_pred CcEEEE---EcCCCCCHHHHHHHHhCccceeccC---------------CCCCccCceeeEEEEC---------------
Confidence 467888 9999999999999997543322211 1234444443444444
Q ss_pred CceeEEEeCCCCCCCch-----------HHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 88 NEYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 88 ~~~~inliDTPG~~df~-----------~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+.++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+..
T Consensus 49 -~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 49 -GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred -CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 6779999999986542 1234567899999999999999888888888887778899999999999973
No 102
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.55 E-value=1.9e-13 Score=138.58 Aligned_cols=111 Identities=28% Similarity=0.164 Sum_probs=77.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|++ +|++|+|||||+++|++..-.+.....+ .|........... +
T Consensus 2 ~V~l---iG~pnvGKSTLln~L~~~~~~~vs~~~~---------------TTr~~i~~i~~~~----------------~ 47 (270)
T TIGR00436 2 FVAI---LGRPNVGKSTLLNQLHGQKISITSPKAQ---------------TTRNRISGIHTTG----------------A 47 (270)
T ss_pred EEEE---ECCCCCCHHHHHHHHhCCcEeecCCCCC---------------cccCcEEEEEEcC----------------C
Confidence 4778 9999999999999997654333222222 2222111111112 5
Q ss_pred eeEEEeCCCCCCCc--------hHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df--------~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
.++.|+||||+.+. ...+..+++.+|++++|+|++.+.... ..++..+...+.|+++|+||+|+.
T Consensus 48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 67999999997642 223556788999999999999876554 555666666788999999999986
No 103
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=126.66 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=100.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
...+|++ .|+.|+||||+++++.+....++..... .+... .+|..|+.....++....
T Consensus 9 ~~~KIvv---~G~~~agKtTfv~~~s~k~~v~t~~~~~----~~s~k--~kr~tTva~D~g~~~~~~------------- 66 (187)
T COG2229 9 IETKIVV---IGPVGAGKTTFVRALSDKPLVITEADAS----SVSGK--GKRPTTVAMDFGSIELDE------------- 66 (187)
T ss_pred cceeEEE---EcccccchhhHHHHhhccccceeecccc----ccccc--cccceeEeecccceEEcC-------------
Confidence 4458888 9999999999999998777654422110 00000 055677766666666551
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcC-CceEEEEecCccccccccCCHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~-~p~ivviNK~D~~~~~~~~~~~ 164 (584)
++.+++.|||||.+|.-...-.++.++++|++||++.+.....+.++....... +|++|++||.|+.. .++|+
T Consensus 67 --~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~---a~ppe 140 (187)
T COG2229 67 --DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFD---ALPPE 140 (187)
T ss_pred --cceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCC---CCCHH
Confidence 489999999999999999999999999999999999998886677777766666 88899999999996 56664
No 104
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.52 E-value=7.8e-14 Score=130.40 Aligned_cols=116 Identities=17% Similarity=0.115 Sum_probs=81.1
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|+.|+|||||+++|...... ..+ ... .+...|+......+.+. +
T Consensus 1 ~i~~---vG~~~~GKstLi~~l~~~~~~----~~~------~~~--~~~~~t~~~~~~~~~~~----------------~ 49 (167)
T cd04160 1 SVLI---LGLDNAGKTTFLEQLKTLFSK----YKG------LPP--SKITPTVGLNIGTIEVG----------------N 49 (167)
T ss_pred CEEE---EecCCCCHHHHHHHHhhhccc----ccC------Ccc--cccCCccccceEEEEEC----------------C
Confidence 4677 999999999999999754321 011 000 11223444444555555 7
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchh-HHHHHHHHH----hcCCceEEEEecCcccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~-t~~~l~~~~----~~~~p~ivviNK~D~~~ 156 (584)
..+++|||||+.+|.......++.+|++++|+|+.+.-... ....+..+. ..++|+++++||+|+..
T Consensus 50 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 50 ARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 89999999999999998999999999999999998653222 222233322 24789999999999863
No 105
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.9e-14 Score=152.89 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=97.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC-
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER- 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~- 85 (584)
|..-+|| +||+|+|||-|++.+-+.+ + ++....|||.......|....-.+..+.+....
T Consensus 474 RSPIcCi---lGHVDTGKTKlld~ir~tN-V---------------qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K 534 (1064)
T KOG1144|consen 474 RSPICCI---LGHVDTGKTKLLDKIRGTN-V---------------QEGEAGGITQQIGATYFPAENIREKTKELKKDAK 534 (1064)
T ss_pred CCceEEE---eecccccchHHHHHhhccc-c---------------ccccccceeeeccccccchHHHHHHHHHHHhhhh
Confidence 4456888 9999999999999993321 1 111122455555544443321111111111111
Q ss_pred -CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCC
Q 007929 86 -QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (584)
Q Consensus 86 -~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~ 162 (584)
+-+---+.+||||||..|.....++...||.||+|||..+|+.+||.+-+..+...+.|+||++||+||. ..|...
T Consensus 535 ~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRL-Ygwk~~ 611 (1064)
T KOG1144|consen 535 KRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL-YGWKSC 611 (1064)
T ss_pred hhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhh-cccccC
Confidence 1223347899999999999999999999999999999999999999999999888999999999999998 355443
No 106
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.51 E-value=7.5e-14 Score=151.11 Aligned_cols=113 Identities=24% Similarity=0.240 Sum_probs=91.4
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|++|+|||||+++|+.....+.... .|+|.+.......|. +
T Consensus 1 ~i~i---vG~~nvGKStL~n~l~~~~~~~v~~~---------------~g~t~d~~~~~~~~~----------------~ 46 (429)
T TIGR03594 1 VVAI---VGRPNVGKSTLFNRLTGKRDAIVSDT---------------PGVTRDRKYGDAEWG----------------G 46 (429)
T ss_pred CEEE---ECCCCCCHHHHHHHHhCCCcceecCC---------------CCcccCceEEEEEEC----------------C
Confidence 3778 99999999999999975443222221 356666666777777 7
Q ss_pred eeEEEeCCCCCCC--------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 90 YLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 90 ~~inliDTPG~~d--------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
..+++|||||+.. +...+..+++.+|++++|+|+.+|.......+++.+.+.++|+++|+||+|...
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 8899999999843 445677789999999999999999999998888888788999999999999873
No 107
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.50 E-value=6.9e-14 Score=130.71 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=82.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|+... ... +.....+.+.....+.+.
T Consensus 2 ~~~kv~v---vG~~~~GKTsli~~l~~~~--~~~--------------~~~~t~~~~~~~~~~~~~-------------- 48 (165)
T cd01864 2 FLFKIIL---IGDSNVGKTCVVQRFKSGT--FSE--------------RQGNTIGVDFTMKTLEIE-------------- 48 (165)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHhhCC--Ccc--------------cCCCccceEEEEEEEEEC--------------
Confidence 3579999 9999999999999995421 100 000112222223334443
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~----~~~~p~ivviNK~D~~~ 156 (584)
+....+++|||||+.+|.......++.+|++++|+|+.+....+....|.... ..++|+++|+||+|+..
T Consensus 49 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 49 GKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 22468899999999999988899999999999999999876655555553322 23678899999999873
No 108
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3.7e-14 Score=138.37 Aligned_cols=134 Identities=25% Similarity=0.276 Sum_probs=96.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEE-eecchhhh-------
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLY-YEMTDAAL------- 78 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~-~~~~~~~~------- 78 (584)
.+++|.- +||+-|||||++.++ +| -.+=..+.|-||.|||+..+.... |+.+++.-
T Consensus 37 ATiNIGT---IGHVAHGKSTvVkAi-----------SG--v~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~ 100 (466)
T KOG0466|consen 37 ATINIGT---IGHVAHGKSTVVKAI-----------SG--VHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYR 100 (466)
T ss_pred eeeeecc---eeccccCcceeeeee-----------cc--ceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhh
Confidence 4455554 999999999999998 22 112235678889999998776533 22222111
Q ss_pred -------hcccccCCCC------ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-CchhHHHHHHHHHhcCCc
Q 007929 79 -------KSYRGERQGN------EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR 144 (584)
Q Consensus 79 -------~~~~~~~~~~------~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-~~~~t~~~l~~~~~~~~p 144 (584)
..++...-+. -.++.|+|||||.=++..|..+..+.|+|++++.+.+. .|+||.+++....-..++
T Consensus 101 s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lk 180 (466)
T KOG0466|consen 101 SFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLK 180 (466)
T ss_pred ccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhc
Confidence 1112221111 24578999999999999999999999999999999875 799999998776666666
Q ss_pred -eEEEEecCcccc
Q 007929 145 -PVLTVNKMDRCF 156 (584)
Q Consensus 145 -~ivviNK~D~~~ 156 (584)
++++-||+|+..
T Consensus 181 hiiilQNKiDli~ 193 (466)
T KOG0466|consen 181 HIIILQNKIDLIK 193 (466)
T ss_pred eEEEEechhhhhh
Confidence 558899999984
No 109
>PRK00089 era GTPase Era; Reviewed
Probab=99.49 E-value=2e-12 Score=132.76 Aligned_cols=115 Identities=23% Similarity=0.210 Sum_probs=80.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.-.|++ +|++|+|||||+++|++..-.+...... .|...........
T Consensus 4 ~~g~V~i---iG~pn~GKSTLin~L~g~~~~~vs~~~~---------------tt~~~i~~i~~~~-------------- 51 (292)
T PRK00089 4 KSGFVAI---VGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTRHRIRGIVTED-------------- 51 (292)
T ss_pred eeEEEEE---ECCCCCCHHHHHHHHhCCceeecCCCCC---------------cccccEEEEEEcC--------------
Confidence 3456888 9999999999999997543322221111 1111111011111
Q ss_pred CCceeEEEeCCCCCCCc--------hHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df--------~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+.++||||+.+. ...+..++..+|++++|+|+..+.......++..+...+.|+++++||+|+.
T Consensus 52 --~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 52 --DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred --CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 578999999997653 3345667889999999999999777777777777666678999999999997
No 110
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.48 E-value=3.1e-13 Score=154.53 Aligned_cols=114 Identities=24% Similarity=0.247 Sum_probs=89.5
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|++|+|||||+++|+.....+..... |+|.+.....+.+.
T Consensus 450 ~~kI~i---vG~~nvGKSSLin~l~~~~~~~v~~~~---------------gtT~d~~~~~~~~~--------------- 496 (712)
T PRK09518 450 LRRVAL---VGRPNVGKSSLLNQLTHEERAVVNDLA---------------GTTRDPVDEIVEID--------------- 496 (712)
T ss_pred CcEEEE---ECCCCCCHHHHHHHHhCccccccCCCC---------------CCCcCcceeEEEEC---------------
Confidence 478999 999999999999999865443322222 35555555556666
Q ss_pred CceeEEEeCCCCCC---------CchHH--HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~---------df~~e--~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+.+|||||+. +|... ...+++.+|++++|+|++++.+.++..++..+...++|+++|+||||+.
T Consensus 497 -~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 497 -GEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred -CCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 6789999999964 22222 2456789999999999999999999999988888899999999999996
No 111
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=2.6e-13 Score=147.15 Aligned_cols=113 Identities=25% Similarity=0.234 Sum_probs=88.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+|++ +|++|+|||||+++|+.....+... ..|+|.+.......|.
T Consensus 2 ~~I~i---vG~~~vGKStL~n~l~~~~~~~v~~---------------~~~~t~d~~~~~~~~~---------------- 47 (435)
T PRK00093 2 PVVAI---VGRPNVGKSTLFNRLTGKRDAIVAD---------------TPGVTRDRIYGEAEWL---------------- 47 (435)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCCceeeCC---------------CCCCcccceEEEEEEC----------------
Confidence 46888 9999999999999996543322211 1245666555666676
Q ss_pred ceeEEEeCCCCCCC----c----hHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVD----F----SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~d----f----~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+++|||||+.+ + ...+..+++.+|++|+|+|+.++.......++..+.+.++|+++|+||+|..
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 68999999999988 3 3345678899999999999999988888878777777899999999999975
No 112
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=2.7e-13 Score=148.15 Aligned_cols=113 Identities=22% Similarity=0.307 Sum_probs=88.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+|+| +|++|+|||||+++|+.....+... ..|+|.+.....+.|.
T Consensus 39 ~~V~I---vG~~nvGKSSL~nrl~~~~~~~v~~---------------~~gvT~d~~~~~~~~~---------------- 84 (472)
T PRK03003 39 PVVAV---VGRPNVGKSTLVNRILGRREAVVED---------------VPGVTRDRVSYDAEWN---------------- 84 (472)
T ss_pred CEEEE---EcCCCCCHHHHHHHHhCcCcccccC---------------CCCCCEeeEEEEEEEC----------------
Confidence 57999 9999999999999997543322221 2246666555556666
Q ss_pred ceeEEEeCCCCCCC--------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~d--------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+++|||||+.. |...+..+++.||++|+|+|++.+.......++..+...++|+++|+||+|+.
T Consensus 85 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 85 GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 77899999999863 44456678899999999999999988777777777777889999999999986
No 113
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.47 E-value=3.5e-13 Score=123.95 Aligned_cols=112 Identities=23% Similarity=0.254 Sum_probs=80.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|++|+|||||+++|+......... ..++|.......+.+.
T Consensus 2 ~~i~l---~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---------------- 47 (157)
T cd04164 2 IKVVI---VGKPNVGKSSLLNALAGRDRAIVSD---------------IAGTTRDVIEESIDIG---------------- 47 (157)
T ss_pred cEEEE---ECCCCCCHHHHHHHHHCCceEeccC---------------CCCCccceEEEEEEeC----------------
Confidence 47888 9999999999999997543221111 1234444434444444
Q ss_pred ceeEEEeCCCCCCCchHH--------HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e--------~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+.++... +...+..+|++++|+|+...........+.. ..+.|+++++||+|+..
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 678999999999887532 3456778999999999998666666555554 45789999999999973
No 114
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.47 E-value=6.6e-13 Score=126.15 Aligned_cols=131 Identities=16% Similarity=0.167 Sum_probs=87.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+..+|+| +|++|+|||||+++|+..... .. +.+ ..|.|..... +.+.
T Consensus 16 ~~~~~i~i---vG~~~~GKStlin~l~~~~~~-~~-------~~~------~~~~t~~~~~--~~~~------------- 63 (179)
T TIGR03598 16 DDGPEIAF---AGRSNVGKSSLINALTNRKKL-AR-------TSK------TPGRTQLINF--FEVN------------- 63 (179)
T ss_pred CCCCEEEE---EcCCCCCHHHHHHHHhCCCCc-cc-------ccC------CCCcceEEEE--EEeC-------------
Confidence 45678999 999999999999999754211 00 000 1123332221 1111
Q ss_pred CCCceeEEEeCCCCCC----------CchHHHHHHhh---hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecC
Q 007929 86 QGNEYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (584)
Q Consensus 86 ~~~~~~inliDTPG~~----------df~~e~~~~l~---~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~ 152 (584)
..+.+|||||+. +|...+...++ .+|++++|+|+..+...++..+++.+...++|+++++||+
T Consensus 64 ----~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 139 (179)
T TIGR03598 64 ----DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKA 139 (179)
T ss_pred ----CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 258999999963 23333334444 4689999999999999999888888777899999999999
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHh
Q 007929 153 DRCFLELQVDGEEAYQTFQKVIENANVIMA 182 (584)
Q Consensus 153 D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~ 182 (584)
|+.. . ...+..+++++..+.
T Consensus 140 D~~~------~----~~~~~~~~~i~~~l~ 159 (179)
T TIGR03598 140 DKLK------K----SELNKQLKKIKKALK 159 (179)
T ss_pred ccCC------H----HHHHHHHHHHHHHHh
Confidence 9863 2 334455666666664
No 115
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.46 E-value=3e-13 Score=126.10 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=79.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|+.|+|||||+++++...-... ...|........... .++.
T Consensus 1 ~ki~v---vG~~~vGKTsli~~~~~~~~~~~------------------~~~~~~~~~~~~~~~------------~~~~ 47 (161)
T cd04124 1 VKIIL---LGDSAVGKSKLVERFLMDGYEPQ------------------QLSTYALTLYKHNAK------------FEGK 47 (161)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCCCCC------------------cCCceeeEEEEEEEE------------ECCE
Confidence 47889 99999999999999964311000 001111111111111 1123
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH-h--cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G--ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~-~--~~~p~ivviNK~D~~ 155 (584)
...+++|||||+..|.......++.+|++|+|+|++++...+....|.... + .++|+++++||+|+.
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 48 TILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 678999999999999999999999999999999998877666555553322 2 268999999999985
No 116
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.45 E-value=4e-13 Score=126.37 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=81.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|+.|+|||||+++++... . +.+....++.+.....+.+.
T Consensus 1 r~~ki~v---vG~~~vGKTsli~~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~-------------- 47 (170)
T cd04115 1 RIFKIIV---IGDSNVGKTCLTYRFCAGR--F--------------PERTEATIGVDFRERTVEID-------------- 47 (170)
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHhCC--C--------------CCccccceeEEEEEEEEEEC--------------
Confidence 4578999 9999999999999996321 0 00011112222222233333
Q ss_pred CCceeEEEeCCCCCCCchH-HHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh-----cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~-e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~-----~~~p~ivviNK~D~~ 155 (584)
+..+.+++|||||+.+|.. .....++.+|++++|+|+.+....+....|..... .++|+++|+||+|+.
T Consensus 48 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 48 GERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred CeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 2357899999999998874 45667789999999999998877777766754322 358999999999986
No 117
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.45 E-value=4e-13 Score=124.04 Aligned_cols=106 Identities=22% Similarity=0.183 Sum_probs=77.4
Q ss_pred ccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCceeEEEeC
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD 96 (584)
+|+.|+|||||++++..... . .....++|+......+.+. +..+++||
T Consensus 2 ~G~~~~GKssl~~~~~~~~~-~---------------~~~~~~~t~~~~~~~~~~~----------------~~~~~liD 49 (158)
T cd01879 2 VGNPNVGKTTLFNALTGARQ-K---------------VGNWPGVTVEKKEGRFKLG----------------GKEIEIVD 49 (158)
T ss_pred CCCCCCCHHHHHHHHhcCcc-c---------------ccCCCCcccccceEEEeeC----------------CeEEEEEE
Confidence 89999999999999954311 0 0112357777766667766 67899999
Q ss_pred CCCCCCchHH------HHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 97 SPGHVDFSSE------VTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 97 TPG~~df~~e------~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
|||+.+|... ....+. .+|++++|+|+... .+....+.++.+.++|+++++||+|+..
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 9999887643 333443 89999999999874 2233445566667899999999999973
No 118
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.45 E-value=3.3e-13 Score=124.02 Aligned_cols=111 Identities=29% Similarity=0.315 Sum_probs=80.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++||+ +|.+|+|||||.|+|.+..-.+ .++ .|.|++.....+.+.
T Consensus 1 i~ial---vG~PNvGKStLfN~Ltg~~~~v----------~n~------pG~Tv~~~~g~~~~~---------------- 45 (156)
T PF02421_consen 1 IRIAL---VGNPNVGKSTLFNALTGAKQKV----------GNW------PGTTVEKKEGIFKLG---------------- 45 (156)
T ss_dssp -EEEE---EESTTSSHHHHHHHHHTTSEEE----------EES------TTSSSEEEEEEEEET----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHHCCCcee----------cCC------CCCCeeeeeEEEEec----------------
Confidence 57899 9999999999999996544211 111 357888777777777
Q ss_pred ceeEEEeCCCCCCCchH----H--HHHHh--hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSS----E--VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~----e--~~~~l--~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+..+.++||||..++.. | +..++ ...|++++|+||+. ..+...+..++.+.++|+++++||||...
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAE 119 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHH
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 79999999999654332 1 22333 47899999999986 34555677788889999999999999973
No 119
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.44 E-value=7.7e-13 Score=123.06 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=77.7
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhcccee-cceEEEEeecchhhhhcccccCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~-~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
.++|++ +|.+|+|||||+++++..... ..... |+. .....+.+.
T Consensus 2 ~~ki~i---~G~~~~GKtsl~~~~~~~~~~--~~~~~----------------t~~~~~~~~~~~~-------------- 46 (164)
T cd04145 2 TYKLVV---VGGGGVGKSALTIQFIQSYFV--TDYDP----------------TIEDSYTKQCEID-------------- 46 (164)
T ss_pred ceEEEE---ECCCCCcHHHHHHHHHhCCCC--cccCC----------------CccceEEEEEEEC--------------
Confidence 478999 999999999999999754321 11011 111 001112222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHH----hcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL----GERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~----~~~~p~ivviNK~D~~ 155 (584)
+....+++|||||+.+|.......++.+|++++|+|+.+....+...-|. .+. ..++|+++++||+|+.
T Consensus 47 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 47 GQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred CEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 22567999999999999999999999999999999998754433333232 211 2467899999999986
No 120
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.44 E-value=1e-12 Score=123.31 Aligned_cols=115 Identities=19% Similarity=0.154 Sum_probs=79.7
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
+++|++ +|++|+|||||+++++...-.... .. ..|.+... ..+.+. +
T Consensus 4 ~~ki~v---vG~~~vGKSsLl~~l~~~~~~~~~--~~------------t~~~~~~~--~~~~~~--------------~ 50 (168)
T cd01866 4 LFKYII---IGDTGVGKSCLLLQFTDKRFQPVH--DL------------TIGVEFGA--RMITID--------------G 50 (168)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC--CC------------ccceeEEE--EEEEEC--------------C
Confidence 579999 999999999999999643211110 00 00111211 222222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH-h---cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~-~---~~~p~ivviNK~D~~ 155 (584)
....+++|||||+.+|.......++.+|++|+|+|+++....+....|.... + .+.|++++.||+|+.
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 51 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 2468999999999998888888999999999999999765555555554322 2 367889999999986
No 121
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.44 E-value=7.7e-13 Score=122.93 Aligned_cols=114 Identities=20% Similarity=0.197 Sum_probs=80.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|++|+|||||+++|+...-.... ...++.......+... +.
T Consensus 1 ~ki~v---~G~~~vGKTsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~~ 47 (161)
T cd04113 1 FKFII---IGSSGTGKSCLLHRFVENKFKEDS----------------QHTIGVEFGSKIIRVG--------------GK 47 (161)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCCCCCC----------------CCceeeeEEEEEEEEC--------------CE
Confidence 47888 999999999999999743221100 0011111111112222 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH----HhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~----~~~~~p~ivviNK~D~~ 155 (584)
...+++|||||+.+|.......++.+|++++|+|+.++.+.+....|... ...++|+++++||+|+.
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 57899999999999988888999999999999999987766665555332 23478889999999997
No 122
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.43 E-value=1.8e-12 Score=125.81 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=88.5
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|+.|+|||||+.+|...... . ++ .++......+... ...++
T Consensus 2 ~vll---~G~~~sGKTsL~~~l~~~~~~------~--t~-----------~s~~~~~~~~~~~------------~~~~~ 47 (203)
T cd04105 2 TVLL---LGPSDSGKTALFTKLTTGKYR------S--TV-----------TSIEPNVATFILN------------SEGKG 47 (203)
T ss_pred eEEE---EcCCCCCHHHHHHHHhcCCCC------C--cc-----------CcEeecceEEEee------------cCCCC
Confidence 4677 999999999999999643110 0 00 1111111111111 00225
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhc-CeEEEEEeCCCCCc--hhHHHHHHHHH------hcCCceEEEEecCcccccccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRIT-DGALVVVDCIEGVC--VQTETVLRQAL------GERIRPVLTVNKMDRCFLELQ 160 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~-D~ailvvda~~g~~--~~t~~~l~~~~------~~~~p~ivviNK~D~~~~~~~ 160 (584)
..+.+||||||.+|.......++.+ +++|+|+|+..... ..+...|..+. ..++|+++++||+|+.. .
T Consensus 48 ~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~---a 124 (203)
T cd04105 48 KKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT---A 124 (203)
T ss_pred ceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc---c
Confidence 7899999999999999999999998 99999999988631 12222332221 24788999999999975 5
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 007929 161 VDGEEAYQTFQKVIENANVI 180 (584)
Q Consensus 161 ~~~~~~~~~~~~~l~~v~~~ 180 (584)
.+.+.+...+++-++.++..
T Consensus 125 ~~~~~i~~~le~ei~~~~~~ 144 (203)
T cd04105 125 KPAKKIKEQLEKELNTLRES 144 (203)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 56666777777766666554
No 123
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.43 E-value=1.8e-12 Score=121.39 Aligned_cols=111 Identities=23% Similarity=0.183 Sum_probs=72.4
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|++|+|||||+++|......+. ... +.|+......+.+. +
T Consensus 2 ~v~i---vG~~~~GKStl~~~l~~~~~~v~-~~~---------------~~t~~~~~~~~~~~----------------~ 46 (170)
T cd01898 2 DVGL---VGLPNAGKSTLLSAISNAKPKIA-DYP---------------FTTLVPNLGVVRVD----------------D 46 (170)
T ss_pred CeEE---ECCCCCCHHHHHHHHhcCCcccc-CCC---------------ccccCCcceEEEcC----------------C
Confidence 5778 99999999999999964221100 001 12333333334444 4
Q ss_pred e-eEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCCC-CchhHHHHHHHHH-h-----cCCceEEEEecCcc
Q 007929 90 Y-LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQAL-G-----ERIRPVLTVNKMDR 154 (584)
Q Consensus 90 ~-~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~g-~~~~t~~~l~~~~-~-----~~~p~ivviNK~D~ 154 (584)
+ .++++||||+.+ +.....+.++.+|++++|+|+.++ -..+....|.+.. . .++|+++|+||+|+
T Consensus 47 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 47 GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred CCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence 4 899999999742 334455566779999999999987 3444444443322 1 36788999999998
Q ss_pred c
Q 007929 155 C 155 (584)
Q Consensus 155 ~ 155 (584)
.
T Consensus 127 ~ 127 (170)
T cd01898 127 L 127 (170)
T ss_pred C
Confidence 6
No 124
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.42 E-value=1.1e-12 Score=141.38 Aligned_cols=114 Identities=19% Similarity=0.247 Sum_probs=86.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+.....+..... |.|.+.....+.+.
T Consensus 202 ~g~kVvI---vG~~nvGKSSLiN~L~~~~~aivs~~p---------------gtTrd~~~~~i~~~-------------- 249 (442)
T TIGR00450 202 DGFKLAI---VGSPNVGKSSLLNALLKQDRAIVSDIK---------------GTTRDVVEGDFELN-------------- 249 (442)
T ss_pred cCCEEEE---ECCCCCcHHHHHHHHhCCCCcccCCCC---------------CcEEEEEEEEEEEC--------------
Confidence 5579999 999999999999999865544433333 34555555556666
Q ss_pred CCceeEEEeCCCCCCCchHH--------HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e--------~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+++|||||+.++... ....++.+|++++|+|++.+...... .+..+...++|+++|+||+|+.
T Consensus 250 --g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 250 --GILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred --CEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCC
Confidence 788999999999765433 24577889999999999988765554 4555555688999999999996
No 125
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.41 E-value=1.7e-12 Score=122.40 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=77.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|++|+|||||+++|.+.. .. . .+ .|+......+.+.
T Consensus 12 ~~~~kv~i---vG~~~~GKTsL~~~l~~~~--~~----------~---~~----~t~g~~~~~~~~~------------- 56 (173)
T cd04154 12 EREMRILI---LGLDNAGKTTILKKLLGED--ID----------T---IS----PTLGFQIKTLEYE------------- 56 (173)
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHccCC--CC----------C---cC----CccccceEEEEEC-------------
Confidence 35578999 9999999999999996431 00 0 00 1222122233333
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHH----HhcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA----LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~----~~~~~p~ivviNK~D~~ 155 (584)
++.+++|||||+..|.......++.+|++++|+|+.+....... ..+..+ ...+.|+++++||+|+.
T Consensus 57 ---~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 57 ---GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 68899999999999888888889999999999999886332221 122222 22578899999999986
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.41 E-value=1.3e-12 Score=120.97 Aligned_cols=109 Identities=18% Similarity=0.121 Sum_probs=77.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|+.|+|||||+++++...- .+ ...|+......+.+. .
T Consensus 1 ki~i---iG~~~~GKssli~~~~~~~~--~~-----------------~~~t~~~~~~~~~~~----------------~ 42 (158)
T cd00878 1 RILI---LGLDGAGKTTILYKLKLGEV--VT-----------------TIPTIGFNVETVEYK----------------N 42 (158)
T ss_pred CEEE---EcCCCCCHHHHHHHHhcCCC--CC-----------------CCCCcCcceEEEEEC----------------C
Confidence 4777 99999999999999965431 00 011222233344444 6
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchh-HHHHHHHHH----hcCCceEEEEecCcccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~-t~~~l~~~~----~~~~p~ivviNK~D~~~ 156 (584)
..+++|||||+..|.......++.+|++++|+|+..+.... ....+..+. ..+.|+++++||+|+..
T Consensus 43 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 43 VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred EEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 88999999999999888888889999999999999763222 223333322 24788999999999973
No 127
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.41 E-value=2e-12 Score=120.06 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=76.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|..|+|||||+++|......... + .-|+......+.+. +
T Consensus 1 ~i~~---vG~~~~GKTsl~~~l~~~~~~~~~-------~----------~~t~g~~~~~~~~~----------------~ 44 (162)
T cd04157 1 NILV---VGLDNSGKTTIINQLKPENAQSQI-------I----------VPTVGFNVESFEKG----------------N 44 (162)
T ss_pred CEEE---ECCCCCCHHHHHHHHcccCCCcce-------e----------cCccccceEEEEEC----------------C
Confidence 4677 999999999999999542110000 0 01222122223333 7
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHH------hcCCceEEEEecCcccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL------GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~------~~~~p~ivviNK~D~~~ 156 (584)
..+++|||||+.+|.......++.+|++|+|+|++++...... ..+..+. ..++|+++++||+|+..
T Consensus 45 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 45 LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred EEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 8899999999999999999999999999999999886543221 1222221 24689999999999873
No 128
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.41 E-value=8.5e-13 Score=122.66 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=79.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|++|+|||||+++|+...- .. ...+.++.+.....+.+. +.
T Consensus 1 ~kv~v---~G~~~~GKTtli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------------~~ 47 (164)
T smart00175 1 FKIIL---IGDSGVGKSSLLSRFTDGKF--SE--------------QYKSTIGVDFKTKTIEVD--------------GK 47 (164)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCC--CC--------------CCCCceeeEEEEEEEEEC--------------CE
Confidence 47888 99999999999999963321 00 000112222222233333 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-Hh---cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-LG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-~~---~~~p~ivviNK~D~~ 155 (584)
...+++|||||+..|.......++.+|++++|+|+.+....+....|... .. .++|+++++||+|+.
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 46899999999999998889999999999999999886665555445332 22 468899999999986
No 129
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.41 E-value=4.7e-13 Score=122.41 Aligned_cols=115 Identities=26% Similarity=0.358 Sum_probs=73.9
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
+++|++ +|++|+|||||+++|+... ... +..++++.......+.+. +
T Consensus 1 ~~ki~~---~G~~~~GKstl~~~l~~~~-~~~---------------~~~~~~~~~~~~~~~~~~--------------~ 47 (161)
T TIGR00231 1 EIKIVI---VGDPNVGKSTLLNRLLGNK-FIT---------------EYKPGTTRNYVTTVIEED--------------G 47 (161)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHhCCC-CcC---------------cCCCCceeeeeEEEEEEC--------------C
Confidence 368999 9999999999999996543 111 111234444433334443 1
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCC-------CCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI-------EGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~-------~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
..+.+.+|||||+.+|........+.++.++.++|.. .+.......+++.+ ..+.|+++++||+|+..
T Consensus 48 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 48 KTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRD 122 (161)
T ss_pred EEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCc
Confidence 1378999999999999665555555555555555544 33334444444443 23889999999999973
No 130
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.41 E-value=2.1e-12 Score=113.55 Aligned_cols=107 Identities=22% Similarity=0.281 Sum_probs=75.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|.+|+|||||+++|+........... +.|.......+.+. +
T Consensus 1 ~V~i---iG~~~~GKSTlin~l~~~~~~~~~~~~---------------~~T~~~~~~~~~~~----------------~ 46 (116)
T PF01926_consen 1 RVAI---IGRPNVGKSTLINALTGKKLAKVSNIP---------------GTTRDPVYGQFEYN----------------N 46 (116)
T ss_dssp EEEE---EESTTSSHHHHHHHHHTSTSSEESSST---------------TSSSSEEEEEEEET----------------T
T ss_pred CEEE---ECCCCCCHHHHHHHHhccccccccccc---------------cceeeeeeeeeeec----------------e
Confidence 4778 999999999999999753221111111 24444433334444 6
Q ss_pred eeEEEeCCCCCCC---------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEec
Q 007929 90 YLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 151 (584)
Q Consensus 90 ~~inliDTPG~~d---------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK 151 (584)
..+.|+||||..+ ...+....++.+|++++|+|+..........+++.+ +.+.|+++|+||
T Consensus 47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l-~~~~~~i~v~NK 116 (116)
T PF01926_consen 47 KKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILREL-KNKKPIILVLNK 116 (116)
T ss_dssp EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHH-HTTSEEEEEEES
T ss_pred eeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-hcCCCEEEEEcC
Confidence 7888999999865 233455666899999999998885555566777776 478899999998
No 131
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.41 E-value=2e-12 Score=121.22 Aligned_cols=114 Identities=19% Similarity=0.156 Sum_probs=76.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|++|+|||||+++|+...-... .. ..++.+.....+.+. +.
T Consensus 1 ~ki~v---iG~~~~GKSsl~~~l~~~~~~~~--~~--------------~t~~~~~~~~~~~~~--------------~~ 47 (172)
T cd01862 1 LKVII---LGDSGVGKTSLMNQYVNKKFSNQ--YK--------------ATIGADFLTKEVTVD--------------DK 47 (172)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCCCcC--cC--------------CccceEEEEEEEEEC--------------CE
Confidence 47888 99999999999999964321000 00 001111111122222 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-H-------hcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-L-------GERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-~-------~~~~p~ivviNK~D~~ 155 (584)
...+++|||||+.+|.......++.+|++|+|+|+.+....+....|... . ..++|+++++||+|+.
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 48 LVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 56789999999999998888999999999999999876544433334321 1 1268899999999997
No 132
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.40 E-value=1.1e-12 Score=121.82 Aligned_cols=116 Identities=17% Similarity=0.253 Sum_probs=79.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+++|....-. . + ....+..+.....+.+. ..+.
T Consensus 1 ~kv~~---vG~~~~GKTsl~~~~~~~~~~--~---------~-----~~~t~~~~~~~~~~~~~------------~~~~ 49 (162)
T cd04106 1 IKVIV---VGNGNVGKSSMIQRFVKGIFT--K---------D-----YKKTIGVDFLEKQIFLR------------QSDE 49 (162)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCCC--C---------C-----CCCcEEEEEEEEEEEEc------------CCCC
Confidence 47888 999999999999999642110 0 0 00111111111112211 1133
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh---cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
...+++|||||+.+|.......++.+|++++|+|+.+.........|..... .++|+++++||+|+.
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 6789999999999999988999999999999999987665555555543332 378999999999986
No 133
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.9e-12 Score=119.83 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=98.0
Q ss_pred CCccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhc
Q 007929 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (584)
Q Consensus 1 ~~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~ 80 (584)
|.+.++..|+|.+ +|..|+|||.|+-++- .|..+++...-|.++....++...
T Consensus 2 ~~~~~dylFKiil---iGds~VGKtCL~~Rf~----------------~~~f~e~~~sTIGVDf~~rt~e~~-------- 54 (205)
T KOG0084|consen 2 MNPEYDYLFKIIL---IGDSGVGKTCLLLRFK----------------DDTFTESYISTIGVDFKIRTVELD-------- 54 (205)
T ss_pred CCcccceEEEEEE---ECCCCcChhhhhhhhc----------------cCCcchhhcceeeeEEEEEEeeec--------
Confidence 4456678899999 9999999999999991 233445555556667666666665
Q ss_pred ccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH----HhcCCceEEEEecCcccc
Q 007929 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~----~~~~~p~ivviNK~D~~~ 156 (584)
++..++.||||+|+++|...+....|.|+|+|+|.|.+.--.......|.+- ...++|+++|.||+|+..
T Consensus 55 ------gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 55 ------GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred ------ceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 4577899999999999999999999999999999999987666777666432 234789999999999973
No 134
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.40 E-value=1.3e-12 Score=124.55 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=77.1
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|+.|+|||||++++++...... .+ ..|++. ....+.+. +.
T Consensus 3 ~~kv~~---vG~~~~GKTsli~~~~~~~~~~~------------~~---t~~~~~--~~~~~~~~-------------~~ 49 (183)
T cd04152 3 SLHIVM---LGLDSAGKTTVLYRLKFNEFVNT------------VP---TKGFNT--EKIKVSLG-------------NS 49 (183)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhcCCcCCc------------CC---ccccce--eEEEeecc-------------CC
Confidence 468899 99999999999999965322100 00 001111 11122111 12
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-----HHHHHHhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-----~l~~~~~~~~p~ivviNK~D~~ 155 (584)
.+..+++|||||+..|.......++.+|++++|+|+++........ ++......++|+++++||+|+.
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 3688999999999999887888889999999999998764333222 2222233578999999999986
No 135
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.40 E-value=5.4e-12 Score=116.80 Aligned_cols=114 Identities=25% Similarity=0.209 Sum_probs=77.8
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
..+|++ +|++|+|||||+++|+...-........ .+.......+...
T Consensus 3 ~~~i~~---~G~~g~GKttl~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~--------------- 49 (168)
T cd04163 3 SGFVAI---VGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTRNRIRGIYTDD--------------- 49 (168)
T ss_pred eeEEEE---ECCCCCCHHHHHHHHhCCceEeccCCCC---------------ceeceEEEEEEcC---------------
Confidence 467888 9999999999999997432111110000 1111111111111
Q ss_pred CceeEEEeCCCCCCCch--------HHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFS--------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~--------~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+.+|||||+.+.. ......+..+|++++|+|+.+........+++.+...+.|.++++||+|+.
T Consensus 50 -~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 50 -DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred -CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 5789999999986543 234556889999999999998866666666666666678999999999997
No 136
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.40 E-value=1.7e-12 Score=120.48 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=75.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|+.|+|||||+++|....- .+.. .|+......+.+. +
T Consensus 1 kv~l---vG~~~~GKTsl~~~l~~~~~------------~~~~-------~t~~~~~~~~~~~----------------~ 42 (158)
T cd04151 1 RILI---LGLDNAGKTTILYRLQLGEV------------VTTI-------PTIGFNVETVTYK----------------N 42 (158)
T ss_pred CEEE---ECCCCCCHHHHHHHHccCCC------------cCcC-------CccCcCeEEEEEC----------------C
Confidence 4778 99999999999999943211 0000 1222222334444 6
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchh-HHHHHHHHHh----cCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~-t~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
..+++|||||+.+|.......++.+|++|+|+|+.+..... ....|....+ .++|+++++||+|+.
T Consensus 43 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 43 LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 88999999999999888888999999999999998753322 1233332222 368999999999986
No 137
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.40 E-value=1.7e-12 Score=148.39 Aligned_cols=113 Identities=23% Similarity=0.318 Sum_probs=90.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+|+| +|++|+|||||+++|++....+..... |+|.+.......|.
T Consensus 276 ~~V~I---vG~~nvGKSSL~n~l~~~~~~iv~~~p---------------GvT~d~~~~~~~~~---------------- 321 (712)
T PRK09518 276 GVVAI---VGRPNVGKSTLVNRILGRREAVVEDTP---------------GVTRDRVSYDAEWA---------------- 321 (712)
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCCCceeecCCC---------------CeeEEEEEEEEEEC----------------
Confidence 57888 999999999999999754333322222 45555555556666
Q ss_pred ceeEEEeCCCCCCC--------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~d--------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+++|||||... |...+..+++.||++|+|+|+.+|.......++..+...++|+++|+||+|+.
T Consensus 322 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 322 GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 78899999999763 45666778999999999999999998888878888778899999999999986
No 138
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.39 E-value=2e-12 Score=123.77 Aligned_cols=114 Identities=21% Similarity=0.162 Sum_probs=79.9
Q ss_pred cccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccc
Q 007929 4 YCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (584)
Q Consensus 4 ~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~ 83 (584)
...+.++|++ +|+.|+|||||+++|.... ... ...|+......+.+.
T Consensus 15 ~~~~~~ki~i---lG~~~~GKStLi~~l~~~~--~~~-----------------~~~T~~~~~~~i~~~----------- 61 (190)
T cd00879 15 LYNKEAKILF---LGLDNAGKTTLLHMLKDDR--LAQ-----------------HVPTLHPTSEELTIG----------- 61 (190)
T ss_pred cccCCCEEEE---ECCCCCCHHHHHHHHhcCC--Ccc-----------------cCCccCcceEEEEEC-----------
Confidence 3456789999 9999999999999995321 100 011222333344555
Q ss_pred cCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchh-HHHHHHHHH----hcCCceEEEEecCccc
Q 007929 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRC 155 (584)
Q Consensus 84 ~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~-t~~~l~~~~----~~~~p~ivviNK~D~~ 155 (584)
+..++++||||+.+|.......++.+|++++|+|+.+.-... ....+.... ..+.|+++++||+|+.
T Consensus 62 -----~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 62 -----NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred -----CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 688999999999998888888899999999999998652221 122223322 2468999999999986
No 139
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.39 E-value=3.5e-12 Score=120.56 Aligned_cols=112 Identities=20% Similarity=0.187 Sum_probs=79.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|....-. .. ..|+......+.+.
T Consensus 14 ~~~kv~~---~G~~~~GKTsl~~~l~~~~~~------------~~-------~~t~~~~~~~~~~~-------------- 57 (174)
T cd04153 14 KEYKVII---VGLDNAGKTTILYQFLLGEVV------------HT-------SPTIGSNVEEIVYK-------------- 57 (174)
T ss_pred CccEEEE---ECCCCCCHHHHHHHHccCCCC------------Cc-------CCccccceEEEEEC--------------
Confidence 3578999 999999999999999532110 00 12333333344454
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhH-HHHHHHHHh----cCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t-~~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+.++||||+..|.......++.+|++++|+|+++...... ...|..+.+ .++|+++++||+|+..
T Consensus 58 --~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 58 --NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred --CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 6889999999999998888889999999999999987643221 122333222 3578899999999863
No 140
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.39 E-value=3.5e-12 Score=119.56 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=80.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
.+++|++ +|.+|+|||||++++....- .. +....++.......+.+.
T Consensus 2 ~~~ki~v---vG~~~~GKSsl~~~~~~~~f--~~--------------~~~~t~~~~~~~~~~~~~-------------- 48 (167)
T cd01867 2 YLFKLLL---IGDSGVGKSCLLLRFSEDSF--NP--------------SFISTIGIDFKIRTIELD-------------- 48 (167)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHhhCcC--Cc--------------ccccCccceEEEEEEEEC--------------
Confidence 3589999 99999999999999964211 00 000011111111223333
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~----~~~~p~ivviNK~D~~~ 156 (584)
+....+.+|||||+.+|.......++.+|++|+|+|+.++...+...-|.... ..+.|+++++||+|+..
T Consensus 49 ~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 49 GKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred CEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 22578999999999999888888899999999999998865554444443322 24678899999999973
No 141
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.39 E-value=1.8e-12 Score=120.61 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=77.2
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
+++|++ +|++|+|||||+++|+...-... .+...+.+.....+ .+. +
T Consensus 1 ~~ki~v---~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~v--~~~--------------~ 47 (163)
T cd01860 1 QFKLVL---LGDSSVGKSSLVLRFVKNEFSEN--------------QESTIGAAFLTQTV--NLD--------------D 47 (163)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceeEEEEEE--EEC--------------C
Confidence 478999 99999999999999964321110 00001111111122 222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~ 155 (584)
.+..+++|||||+.+|.......++.+|++|+|+|++..-.......| ..+.. .++|+++++||+|+.
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 267899999999999888888888999999999999876444333333 22222 357788999999987
No 142
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.39 E-value=3.6e-12 Score=121.67 Aligned_cols=112 Identities=18% Similarity=0.104 Sum_probs=79.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|..|+|||||+++|....-.. . ..|.......+.+.
T Consensus 15 ~~~~~i~i---vG~~~~GKTsli~~l~~~~~~~------------~-------~~t~~~~~~~~~~~------------- 59 (184)
T smart00178 15 NKHAKILF---LGLDNAGKTTLLHMLKNDRLAQ------------H-------QPTQHPTSEELAIG------------- 59 (184)
T ss_pred cccCEEEE---ECCCCCCHHHHHHHHhcCCCcc------------c-------CCccccceEEEEEC-------------
Confidence 45688999 9999999999999995321100 0 01222222233444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhH-HHHHHHHHh----cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t-~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
+.+++++||||+..+.......++.+|++|+|+|+++...... ...+..+.+ .++|+++++||+|+.
T Consensus 60 ---~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 60 ---NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 6889999999999988888889999999999999987533222 223333322 478999999999986
No 143
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.39 E-value=1.4e-12 Score=122.13 Aligned_cols=116 Identities=15% Similarity=0.193 Sum_probs=80.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|... .... ..+ ..++.+.....+.+.
T Consensus 6 ~~~~v~v---~G~~~~GKSsli~~l~~~--~~~~-~~~-------------~t~~~~~~~~~~~~~-------------- 52 (169)
T cd04114 6 FLFKIVL---IGNAGVGKTCLVRRFTQG--LFPP-GQG-------------ATIGVDFMIKTVEIK-------------- 52 (169)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHHhC--CCCC-CCC-------------CceeeEEEEEEEEEC--------------
Confidence 4478999 999999999999999532 1110 001 112222223334443
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH----HHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ----ALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~----~~~~~~p~ivviNK~D~~ 155 (584)
+....+.++||||+.+|.......++.+|++++|+|+.++........|.. ....++|+++++||+|+.
T Consensus 53 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 53 GEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 224668899999999999999999999999999999988765544444532 223468889999999986
No 144
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.39 E-value=1.8e-12 Score=140.29 Aligned_cols=113 Identities=22% Similarity=0.315 Sum_probs=85.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+.....+.... .|.|.+.....+.+.
T Consensus 214 ~~~kV~i---vG~~nvGKSSLln~L~~~~~a~v~~~---------------~gtT~d~~~~~i~~~-------------- 261 (449)
T PRK05291 214 EGLKVVI---AGRPNVGKSSLLNALLGEERAIVTDI---------------AGTTRDVIEEHINLD-------------- 261 (449)
T ss_pred cCCEEEE---ECCCCCCHHHHHHHHhCCCCcccCCC---------------CCcccccEEEEEEEC--------------
Confidence 4578999 99999999999999975443222222 234555555555565
Q ss_pred CCceeEEEeCCCCCCCchHH--------HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e--------~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+++|||||+.++... +...++.+|++++|+|++++...+....|.. ..+.|+++|+||+|+.
T Consensus 262 --g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 262 --GIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred --CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 788999999999876443 3346788999999999998877766666665 4578999999999997
No 145
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.38 E-value=4.1e-12 Score=119.31 Aligned_cols=108 Identities=24% Similarity=0.254 Sum_probs=76.8
Q ss_pred EEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCce
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (584)
|++ +|..|+|||||+++|... ... +...|+......+.+. ++
T Consensus 2 i~~---~G~~~~GKTsl~~~l~~~--~~~-----------------~~~~t~g~~~~~~~~~----------------~~ 43 (167)
T cd04161 2 LLT---VGLDNAGKTTLVSALQGE--IPK-----------------KVAPTVGFTPTKLRLD----------------KY 43 (167)
T ss_pred EEE---ECCCCCCHHHHHHHHhCC--CCc-----------------cccCcccceEEEEEEC----------------CE
Confidence 567 999999999999999532 100 0112232223344444 78
Q ss_pred eEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhH-HHHHHHHHh----cCCceEEEEecCcccc
Q 007929 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 91 ~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t-~~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
.++++||||+..|.......++.||++|+|+|+++.-..+. ...+..+.+ .++|+++|+||+|+..
T Consensus 44 ~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 44 EVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred EEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 99999999999999888999999999999999987543332 223333332 3678999999999974
No 146
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.38 E-value=4.9e-12 Score=118.19 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=78.1
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
+++|++ +|..|+|||||+++++...-... ....++.+.....+.+. +
T Consensus 2 ~~ki~i---~G~~~vGKSsli~~~~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~ 48 (166)
T cd01869 2 LFKLLL---IGDSGVGKSCLLLRFADDTYTES----------------YISTIGVDFKIRTIELD--------------G 48 (166)
T ss_pred eEEEEE---ECCCCCCHHHHHHHHhcCCCCCC----------------CCCccceeEEEEEEEEC--------------C
Confidence 478999 99999999999999963211000 00011222222223222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
....+.+|||||+.+|.......++.+|++|+|+|+++.........|..... .++|++++.||+|+.
T Consensus 49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 49 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 25689999999999998888889999999999999987544433333432221 467889999999986
No 147
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.38 E-value=3.4e-12 Score=118.90 Aligned_cols=112 Identities=23% Similarity=0.285 Sum_probs=75.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhcccee-cceEEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|++|+|||||+++|+...-. ..... |+. .....+... +
T Consensus 1 ~ki~v---~G~~~~GKTsli~~~~~~~~~--~~~~~----------------t~~~~~~~~~~~~--------------~ 45 (164)
T smart00173 1 YKLVV---LGSGGVGKSALTIQFVQGHFV--DDYDP----------------TIEDSYRKQIEID--------------G 45 (164)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCcCC--cccCC----------------chhhhEEEEEEEC--------------C
Confidence 47888 999999999999999753211 10000 111 001112222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-----HhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-----LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-----~~~~~p~ivviNK~D~~ 155 (584)
....+.+|||||+.+|.......++.+|++++|+|+.+.-......-|... ...++|+++++||+|+.
T Consensus 46 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 46 EVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred EEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 257889999999999999888999999999999999875443333333221 12367889999999986
No 148
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.37 E-value=6.3e-12 Score=117.66 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=77.0
Q ss_pred EEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCce
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (584)
|++ +|..|+|||||+.+|....- . .+. ..|+......+.+. +.
T Consensus 2 i~i---vG~~~vGKTsli~~~~~~~~-~----------~~~-------~pt~g~~~~~i~~~----------------~~ 44 (164)
T cd04162 2 ILV---LGLDGAGKTSLLHSLSSERS-L----------ESV-------VPTTGFNSVAIPTQ----------------DA 44 (164)
T ss_pred EEE---ECCCCCCHHHHHHHHhcCCC-c----------ccc-------cccCCcceEEEeeC----------------Ce
Confidence 567 99999999999999964211 0 000 01222222334444 78
Q ss_pred eEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHH-HHHHHh--cCCceEEEEecCcccc
Q 007929 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG--ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 91 ~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~-l~~~~~--~~~p~ivviNK~D~~~ 156 (584)
.+.+|||||+.+|.......++.+|++|+|+|+++......... +..+.. .++|+++|+||+|+..
T Consensus 45 ~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 45 IMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred EEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 99999999999999988999999999999999987643333222 233332 5788999999999873
No 149
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.37 E-value=1.9e-12 Score=120.05 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=80.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|++|+|||||+++|+...-... ...+.+.+.....+.+. +.
T Consensus 1 ~ki~l---iG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~ 47 (161)
T cd01861 1 HKLVF---LGDQSVGKTSIITRFMYDTFDNQ----------------YQATIGIDFLSKTMYLE--------------DK 47 (161)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcCCCCcc----------------CCCceeeeEEEEEEEEC--------------CE
Confidence 36888 99999999999999965322111 11123333333334333 12
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH--hc--CCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL--GE--RIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~--~~--~~p~ivviNK~D~~ 155 (584)
...+++|||||+..|.......++.+|++++|+|+.+..+.+....|.... .. +.|+++++||+|+.
T Consensus 48 ~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 48 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 467999999999999888889999999999999998876555544443322 22 38899999999995
No 150
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.37 E-value=5.1e-12 Score=118.20 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=79.0
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc--eEEEEeecchhhhhcccccC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--GISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~--~~~~~~~~~~~~~~~~~~~~ 85 (584)
.++|++ +|+.|+|||||+++|... ....... .|+... ...+...
T Consensus 2 ~~ki~i---iG~~~vGKTsli~~~~~~--~~~~~~~----------------~t~~~~~~~~~~~~~------------- 47 (166)
T cd04122 2 IFKYII---IGDMGVGKSCLLHQFTEK--KFMADCP----------------HTIGVEFGTRIIEVN------------- 47 (166)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhcC--CCCCCCC----------------cccceeEEEEEEEEC-------------
Confidence 378999 999999999999999532 1111000 111111 1112222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~----~~~~p~ivviNK~D~~~ 156 (584)
+...++.+|||||+..|.......++.+|++|+|+|.++....+....|.... ..+.|++++.||+|+..
T Consensus 48 -~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 48 -GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred -CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 22578999999999999998889999999999999998865555554553322 23567889999999973
No 151
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=9.5e-12 Score=124.72 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=118.8
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCee-eeCChhhHhhhccceecceEEEEeecchhhhhc-----c
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRQDEAERGITIKSTGISLYYEMTDAALKS-----Y 81 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~-~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~-----~ 81 (584)
.++||+ +|..|+|||||+.-| ..|..+. +.|..+ -+-.+++|...|-|...+.-.+.|+......+- .
T Consensus 167 evRvAV---lGg~D~GKSTLlGVL--TQgeLDn-G~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~ta 240 (591)
T KOG1143|consen 167 EVRVAV---LGGCDVGKSTLLGVL--TQGELDN-GNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTA 240 (591)
T ss_pred EEEEEE---ecCcccCcceeeeee--ecccccC-CCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccH
Confidence 467888 999999999999988 3343332 233222 244578899888887776666666543322220 0
Q ss_pred cccCCCCceeEEEeCCCCCCCchHHHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccc
Q 007929 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 159 (584)
Q Consensus 82 ~~~~~~~~~~inliDTPG~~df~~e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~ 159 (584)
..-....++.++|||.+||..|...++.+|. ..|.|.+||+|..|+...|++++..+.+.++|++++++|||+..
T Consensus 241 EEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~--- 317 (591)
T KOG1143|consen 241 EEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD--- 317 (591)
T ss_pred HHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc---
Confidence 1112344678999999999999999999996 57899999999999999999999999999999999999999984
Q ss_pred cCCHHHHHHHHHHHHHHHHHHH
Q 007929 160 QVDGEEAYQTFQKVIENANVIM 181 (584)
Q Consensus 160 ~~~~~~~~~~~~~~l~~v~~~l 181 (584)
+ +.+++++.++...+
T Consensus 318 ---~----~~~~~tv~~l~nll 332 (591)
T KOG1143|consen 318 ---R----QGLKKTVKDLSNLL 332 (591)
T ss_pred ---c----hhHHHHHHHHHHHH
Confidence 2 45677777776666
No 152
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.36 E-value=6.3e-12 Score=116.31 Aligned_cols=114 Identities=19% Similarity=0.159 Sum_probs=77.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+++|+....... .. +.++.......+.+. +.
T Consensus 1 ~ki~i---~G~~~~GKStli~~l~~~~~~~~--~~--------------~~~~~~~~~~~~~~~--------------~~ 47 (162)
T cd04123 1 FKVVL---LGEGRVGKTSLVLRYVENKFNEK--HE--------------STTQASFFQKTVNIG--------------GK 47 (162)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCCCCC--cC--------------CccceeEEEEEEEEC--------------CE
Confidence 47889 99999999999999975322110 00 011111111112221 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH----HhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~----~~~~~p~ivviNK~D~~ 155 (584)
...+++|||||+..|.......++.+|++++|+|..++...+....|... ...++|+++++||+|+.
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 56799999999998888888888999999999999887655554444322 22367899999999987
No 153
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.36 E-value=6.6e-12 Score=117.82 Aligned_cols=116 Identities=21% Similarity=0.176 Sum_probs=79.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|.+|+|||||+++++...- .. +....++.+.....+.+.
T Consensus 4 ~~~ki~v---vG~~~~GKTsli~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~-------------- 50 (170)
T cd04116 4 SLLKVIL---LGDGGVGKSSLMNRYVTNKF--DT--------------QLFHTIGVEFLNKDLEVD-------------- 50 (170)
T ss_pred eEEEEEE---ECCCCCCHHHHHHHHHcCCC--Cc--------------CcCCceeeEEEEEEEEEC--------------
Confidence 4589999 99999999999999963211 00 000011111111122222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-H-------hcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-L-------GERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-~-------~~~~p~ivviNK~D~~ 155 (584)
+....+.||||||+.+|.......++.+|++++|+|..+....+....|... . ..++|+++++||+|+.
T Consensus 51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 51 GHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred CeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 2357789999999999998888899999999999999877555544444321 1 1357889999999986
No 154
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.36 E-value=6.1e-12 Score=115.42 Aligned_cols=114 Identities=19% Similarity=0.196 Sum_probs=78.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|++|+|||||+++|+....... ..+..+.......+... ..
T Consensus 1 ~~i~~---~G~~~~GKStl~~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~ 47 (159)
T cd00154 1 FKIVL---IGDSGVGKTSLLLRFVDGKFDEN----------------YKSTIGVDFKSKTIEID--------------GK 47 (159)
T ss_pred CeEEE---ECCCCCCHHHHHHHHHhCcCCCc----------------cCCceeeeeEEEEEEEC--------------CE
Confidence 46888 99999999999999964322111 00011122222222221 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh---cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~---~~~p~ivviNK~D~~ 155 (584)
...+++|||||+..|.......++.+|++++|+|+.+.........|.. +.. .+.|+++++||+|+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 48 TVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 5789999999999999999999999999999999987544444444433 333 247889999999996
No 155
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.36 E-value=7.2e-12 Score=121.30 Aligned_cols=113 Identities=21% Similarity=0.207 Sum_probs=78.3
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhcccee--cceEEEEeecchhhhhcccccCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK--STGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~--~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
++|++ +|..|+|||||+++|+...- ... ...|+. .....+.+. +
T Consensus 1 ~Kivi---vG~~~vGKTsli~~l~~~~~--~~~----------------~~~t~~~d~~~~~v~~~-------------~ 46 (201)
T cd04107 1 LKVLV---IGDLGVGKTSIIKRYVHGIF--SQH----------------YKATIGVDFALKVIEWD-------------P 46 (201)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcCCC--CCC----------------CCCceeEEEEEEEEEEC-------------C
Confidence 47888 99999999999999964211 000 001222 111122221 1
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH--------hcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL--------GERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~--------~~~~p~ivviNK~D~~ 155 (584)
+....+.+|||||+..|.......++.+|++|+|+|.+.....+....|.... ...+|+++|+||+|+.
T Consensus 47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 23678999999999999888888999999999999998765555544443221 1467899999999996
No 156
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.36 E-value=3.8e-12 Score=118.18 Aligned_cols=114 Identities=19% Similarity=0.212 Sum_probs=77.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|+.|+|||||+++|+...-... .+...+.+.. ...+.+. ..
T Consensus 1 ~ki~v---~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~--~~~~~~~--------------~~ 47 (161)
T cd01863 1 LKILL---IGDSGVGKSSLLLRFTDDTFDPD--------------LAATIGVDFK--VKTLTVD--------------GK 47 (161)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcCCCCcc--------------cCCcccceEE--EEEEEEC--------------CE
Confidence 47888 99999999999999964321110 0001111111 1122222 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-----HhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-----LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-----~~~~~p~ivviNK~D~~ 155 (584)
...+.+|||||+..|.......++.+|++++|+|+++....+....|... ...+.|+++++||+|+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 57899999999999988888889999999999999876555544444321 13467889999999997
No 157
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.36 E-value=3.8e-12 Score=123.27 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=80.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|++ +|..|+|||||+.++.+.. ... +....++++.....+.+. +..
T Consensus 2 ~vvv---lG~~gVGKTSli~r~~~~~--f~~--------------~~~~Ti~~~~~~~~i~~~--------------~~~ 48 (202)
T cd04120 2 QVII---IGSRGVGKTSLMRRFTDDT--FCE--------------ACKSGVGVDFKIKTVELR--------------GKK 48 (202)
T ss_pred EEEE---ECcCCCCHHHHHHHHHhCC--CCC--------------cCCCcceeEEEEEEEEEC--------------CEE
Confidence 5777 9999999999999996421 110 000011222222223333 235
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
..+++|||+|+..|.......++.+|++|+|+|.++....+....|....+ .++|+++|.||+|+.
T Consensus 49 v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 49 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 889999999999999999999999999999999998877766666654332 357888999999986
No 158
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.35 E-value=2.7e-12 Score=120.36 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=79.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+++++...- .. +...|+........+. .+..
T Consensus 1 ~ki~v---vG~~~vGKTsli~~~~~~~~--~~----------------~~~~t~~~~~~~~~~~------------~~~~ 47 (166)
T cd00877 1 FKLVL---VGDGGTGKTTFVKRHLTGEF--EK----------------KYVATLGVEVHPLDFH------------TNRG 47 (166)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCC--CC----------------CCCCceeeEEEEEEEE------------ECCE
Confidence 47888 99999999999999974211 00 0012222222222222 1123
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh---cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
...+.+|||||+.+|.......++.+|++|+|+|.+++...+....|..... .++|+++++||+|+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 6789999999999988777778889999999999998766655544533222 268999999999986
No 159
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.35 E-value=3.2e-12 Score=119.08 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=76.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|++|+|||||+++|+...-.. +....++.+.....+.+. +.
T Consensus 1 ~ki~~---vG~~~vGKTsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~--------------~~ 47 (168)
T cd04119 1 IKVIS---MGNSGVGKSCIIKRYCEGRFVS----------------KYLPTIGIDYGVKKVSVR--------------NK 47 (168)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEEC--------------Ce
Confidence 47888 9999999999999996432110 000011111111122222 23
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh--------cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG--------ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~--------~~~p~ivviNK~D~~ 155 (584)
...+++|||||+.+|.......++.+|++|+|+|+++....+....|.. +.+ .+.|+++++||+|+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 48 EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 6889999999999998888888899999999999987654444444422 211 356788999999986
No 160
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.35 E-value=3.9e-12 Score=132.98 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=96.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
..-++|+| +|.+|+|||||+|+|+.+...|...-+| .|.+.-...+...
T Consensus 215 r~G~kvvI---iG~PNvGKSSLLNaL~~~d~AIVTdI~G---------------TTRDviee~i~i~------------- 263 (454)
T COG0486 215 REGLKVVI---IGRPNVGKSSLLNALLGRDRAIVTDIAG---------------TTRDVIEEDINLN------------- 263 (454)
T ss_pred hcCceEEE---ECCCCCcHHHHHHHHhcCCceEecCCCC---------------CccceEEEEEEEC-------------
Confidence 35689999 9999999999999999999998887777 5677666777777
Q ss_pred CCCceeEEEeCCCCCCCchHH--------HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e--------~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
++.+.++||+|..+-... ...++..||.+++|+|++.+...+...++. +...+.|.++|+||.|+..
T Consensus 264 ---G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 264 ---GIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVS 338 (454)
T ss_pred ---CEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccc
Confidence 899999999998753332 345778999999999999987777776666 4677889999999999984
No 161
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.35 E-value=7.7e-12 Score=117.57 Aligned_cols=112 Identities=18% Similarity=0.143 Sum_probs=77.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+.+|.... .. +.. .|+......+.+.
T Consensus 7 ~~~~kv~i---~G~~~~GKTsli~~l~~~~--~~----------~~~-------~t~g~~~~~~~~~------------- 51 (168)
T cd04149 7 NKEMRILM---LGLDAAGKTTILYKLKLGQ--SV----------TTI-------PTVGFNVETVTYK------------- 51 (168)
T ss_pred CCccEEEE---ECcCCCCHHHHHHHHccCC--Cc----------ccc-------CCcccceEEEEEC-------------
Confidence 35689999 9999999999999995321 00 000 1121111223333
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchh-HHHHHHHHHh----cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~-t~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
+..+++|||||+..|.......++.+|++|+|+|+++..... ....|..... .++|+++++||+|+.
T Consensus 52 ---~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 52 ---NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 688999999999999887888899999999999998753222 2233333332 357889999999986
No 162
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.35 E-value=5.6e-12 Score=121.82 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=76.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|+.|+|||||+++|++..- ..... ..+.......+.+. +..
T Consensus 1 kv~v---vG~~~vGKTsll~~~~~~~~--~~~~~---------------~t~~~~~~~~~~~~--------------~~~ 46 (198)
T cd04147 1 RLVF---MGAAGVGKTALIQRFLYDTF--EPKYR---------------RTVEEMHRKEYEVG--------------GVS 46 (198)
T ss_pred CEEE---ECCCCCCHHHHHHHHHhCCC--CccCC---------------CchhhheeEEEEEC--------------CEE
Confidence 4677 99999999999999965321 10000 01111112223333 224
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHH----hcCCceEEEEecCcccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~----~~~~p~ivviNK~D~~~ 156 (584)
..++||||||+.+|......+++.+|++|+|+|+++....+....|. .+. ..++|+++++||+|+..
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 78999999999999887788899999999999998865444333332 222 24789999999999863
No 163
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.35 E-value=4.7e-12 Score=118.39 Aligned_cols=110 Identities=19% Similarity=0.179 Sum_probs=76.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhcccee---cceEEEEeecchhhhhcccccC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK---STGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~---~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
++|++ +|..|+|||||+++++... .... .. .|+. ........
T Consensus 2 ~kv~~---vG~~~vGKTsli~~~~~~~--f~~~---------~~-------~t~~~~~~~~~~~~~-------------- 46 (165)
T cd04140 2 YRVVV---FGAGGVGKSSLVLRFVKGT--FRES---------YI-------PTIEDTYRQVISCSK-------------- 46 (165)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCC--CCCC---------cC-------CcchheEEEEEEECC--------------
Confidence 68899 9999999999999996422 1000 00 0111 01111222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh------cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~------~~~p~ivviNK~D~~ 155 (584)
....+++|||||+.+|......+++.+|++|+|+|..+........-| ..+.. .++|+++|.||+|+.
T Consensus 47 --~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 47 --NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred --EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 267899999999999998888889999999999999876655433333 22221 467899999999986
No 164
>PTZ00369 Ras-like protein; Provisional
Probab=99.35 E-value=5.5e-12 Score=120.92 Aligned_cols=115 Identities=21% Similarity=0.259 Sum_probs=79.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~ 84 (584)
+..++|++ +|..|+|||||++++++..-. .. .. .|+.... ..+...
T Consensus 3 ~~~~Ki~i---iG~~~~GKTsLi~~~~~~~~~--~~---------~~-------~t~~~~~~~~~~~~------------ 49 (189)
T PTZ00369 3 STEYKLVV---VGGGGVGKSALTIQFIQNHFI--DE---------YD-------PTIEDSYRKQCVID------------ 49 (189)
T ss_pred CcceEEEE---ECCCCCCHHHHHHHHhcCCCC--cC---------cC-------CchhhEEEEEEEEC------------
Confidence 45689999 999999999999999643211 00 00 0111110 111122
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH-----hcCCceEEEEecCccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 155 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~-----~~~~p~ivviNK~D~~ 155 (584)
+....+++|||||+.+|.......++.+|++++|+|+++.........|.... ..++|+++++||+|+.
T Consensus 50 --~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 50 --EETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred --CEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 22578999999999999999889999999999999998875544444343222 2367889999999986
No 165
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.35 E-value=1.5e-11 Score=115.23 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=77.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|+.|+|||||+++|++..- ...... +.........+. +.
T Consensus 1 ~kv~i---vG~~~vGKTsl~~~l~~~~~--~~~~~~----------------~~~~~~~~~~~~--------------~~ 45 (166)
T cd01893 1 VRIVL---IGDEGVGKSSLIMSLVSEEF--PENVPR----------------VLPEITIPADVT--------------PE 45 (166)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCcC--CccCCC----------------cccceEeeeeec--------------CC
Confidence 37888 99999999999999975321 100000 000001111111 23
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHH---hcCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL---GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~---~~~~p~ivviNK~D~~~ 156 (584)
...+++|||||+.++.......++.+|++++|+|+.+....+.. ..|.... ..++|+++|+||+|+..
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred eEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 68899999999998888888888999999999999887666653 2343222 24688999999999973
No 166
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.34 E-value=8.6e-12 Score=115.40 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=75.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceec-ceEEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS-TGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|.+|+|||||+++|+...- ...... |+.. ....+.+. +
T Consensus 2 ~ki~i---iG~~~vGKTsl~~~~~~~~~--~~~~~~----------------t~~~~~~~~~~~~--------------~ 46 (162)
T cd04138 2 YKLVV---VGAGGVGKSALTIQLIQNHF--VDEYDP----------------TIEDSYRKQVVID--------------G 46 (162)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCCC--cCCcCC----------------cchheEEEEEEEC--------------C
Confidence 68899 99999999999999974321 110000 1110 01112222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~----~~~~p~ivviNK~D~~ 155 (584)
..+.+++|||||+.+|.......++.+|++++|+|..+....+....| ..+. ..++|+++++||+|+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 47 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 246789999999999999999999999999999999865433333222 2222 2477899999999986
No 167
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.34 E-value=9.4e-12 Score=116.04 Aligned_cols=112 Identities=22% Similarity=0.297 Sum_probs=76.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc-eEEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|..|+|||||+++++. +........ |+... ...+... +
T Consensus 2 ~ki~~---~G~~~~GKTsli~~~~~--~~~~~~~~~----------------t~~~~~~~~~~~~--------------~ 46 (164)
T cd04175 2 YKLVV---LGSGGVGKSALTVQFVQ--GIFVEKYDP----------------TIEDSYRKQVEVD--------------G 46 (164)
T ss_pred cEEEE---ECCCCCCHHHHHHHHHh--CCCCcccCC----------------cchheEEEEEEEC--------------C
Confidence 57888 99999999999999963 221111111 11111 1112222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~----~~~~p~ivviNK~D~~ 155 (584)
..+.+++|||||+..|.......++.+|++++|+|..+....+...-| ..+. ..++|+++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 47 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 257789999999999999999999999999999998765444333222 2222 2468999999999996
No 168
>PLN03118 Rab family protein; Provisional
Probab=99.34 E-value=7.6e-12 Score=122.15 Aligned_cols=116 Identities=19% Similarity=0.227 Sum_probs=80.5
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...- .. .....+.......+.+.
T Consensus 12 ~~~~kv~i---vG~~~vGKTsli~~l~~~~~--~~---------------~~~t~~~~~~~~~~~~~------------- 58 (211)
T PLN03118 12 DLSFKILL---IGDSGVGKSSLLVSFISSSV--ED---------------LAPTIGVDFKIKQLTVG------------- 58 (211)
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHHhCCC--CC---------------cCCCceeEEEEEEEEEC-------------
Confidence 35689999 99999999999999965321 00 00111122222223332
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh-----cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG-----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~-----~~~p~ivviNK~D~~ 155 (584)
+..+.++||||||+.+|.......++.+|++|+|+|+.+....+... .|..... .+.|+++|+||+|+.
T Consensus 59 -~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 59 -GKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred -CEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 22578999999999999998899999999999999998765554442 3433221 356888999999986
No 169
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.34 E-value=1.3e-11 Score=121.64 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=88.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
..|++ +|++|+|||||+++|+...... ... ...|. +++ +. ..
T Consensus 40 ~~i~i---vG~~~~GKstl~~~l~~~~~~~--------~~~------~~~g~------i~i-~~--------------~~ 81 (225)
T cd01882 40 LVVAV---VGPPGVGKTTLIKSLVKNYTKQ--------NIS------DIKGP------ITV-VT--------------GK 81 (225)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhhcccC--------ccc------ccccc------EEE-Ee--------------cC
Confidence 46788 9999999999999997542210 000 01111 111 11 12
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccccccccCCHHHHH
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGEEAY 167 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~~~ 167 (584)
+.+++++||||+. ..+..++..+|.+++|+|+..|...++..+|..+...++|.+ +|+||+|+.. ..
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~------~~--- 149 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFK------KN--- 149 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCC------cH---
Confidence 6889999999975 677788899999999999999999999999988877888965 5999999862 11
Q ss_pred HHHHHHHHHHHHHH
Q 007929 168 QTFQKVIENANVIM 181 (584)
Q Consensus 168 ~~~~~~l~~v~~~l 181 (584)
..+.++.++++..+
T Consensus 150 ~~~~~~~~~l~~~~ 163 (225)
T cd01882 150 KTLRKTKKRLKHRF 163 (225)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555666666654
No 170
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.34 E-value=9.2e-12 Score=113.86 Aligned_cols=110 Identities=25% Similarity=0.176 Sum_probs=79.4
Q ss_pred ccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCceeEEEeC
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD 96 (584)
+|+.|+|||||+++|......... ..++.|.........+. ....+++||
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~---------------~~~~~~~~D 51 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAIVS---------------PVPGTTTDPVEYVWELG---------------PLGPVVLID 51 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccccC---------------CCCCcEECCeEEEEEec---------------CCCcEEEEE
Confidence 899999999999999654322111 11223333333333332 157899999
Q ss_pred CCCCCCchH-------HHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 97 SPGHVDFSS-------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 97 TPG~~df~~-------e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
|||+.++.. .+...++.+|++++|+|+..+........+......+.|+++++||+|+..
T Consensus 52 t~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 52 TPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred CCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 999987653 445678999999999999999887777656666678999999999999973
No 171
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.33 E-value=5.7e-12 Score=117.69 Aligned_cols=112 Identities=17% Similarity=0.292 Sum_probs=73.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|.+|+|||||+++++... ... ++.+... +.... .+.+. ++.
T Consensus 1 ki~v---vG~~~~GKtsli~~~~~~~--~~~---------~~~~t~~----~~~~~--~~~~~--------------~~~ 46 (165)
T cd04146 1 KIAV---LGASGVGKSALVVRFLTKR--FIG---------EYDPNLE----SLYSR--QVTID--------------GEQ 46 (165)
T ss_pred CEEE---ECCCCCcHHHHHHHHHhCc--ccc---------ccCCChH----HhceE--EEEEC--------------CEE
Confidence 4677 9999999999999996421 100 0111000 11111 11222 225
Q ss_pred eeEEEeCCCCCCC-chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH------hcCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL------GERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~d-f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~------~~~~p~ivviNK~D~~ 155 (584)
..+++|||||+.. +.......++.+|++|+|+|+++....+....|.... ..++|+++|+||+|+.
T Consensus 47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 6799999999985 4567788899999999999999876555444443221 2378899999999986
No 172
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.33 E-value=1.7e-11 Score=114.05 Aligned_cols=109 Identities=20% Similarity=0.177 Sum_probs=74.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+.+|... .. .... .|+......+.+.
T Consensus 1 ~kv~~---~G~~~~GKTsli~~l~~~--~~----------~~~~-------pt~g~~~~~~~~~---------------- 42 (159)
T cd04150 1 MRILM---VGLDAAGKTTILYKLKLG--EI----------VTTI-------PTIGFNVETVEYK---------------- 42 (159)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcC--CC----------cccC-------CCCCcceEEEEEC----------------
Confidence 37888 999999999999999421 11 0111 1221111223333
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchh-HHHHHHHHHh----cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~-t~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
...+++|||||+..|.......++.||++|+|+|+++..... ....|..+.. ...|+++++||+|+.
T Consensus 43 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 688999999999998888888899999999999998643222 2233333322 247888999999986
No 173
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.33 E-value=1.6e-11 Score=115.39 Aligned_cols=108 Identities=19% Similarity=0.104 Sum_probs=74.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|..|+|||||+++|.... .. + ...|+......+.+. +
T Consensus 1 ~vvl---vG~~~~GKTsl~~~l~~~~--~~----------~-------~~~T~~~~~~~~~~~----------------~ 42 (169)
T cd04158 1 RVVT---LGLDGAGKTTILFKLKQDE--FM----------Q-------PIPTIGFNVETVEYK----------------N 42 (169)
T ss_pred CEEE---ECCCCCCHHHHHHHHhcCC--CC----------C-------cCCcCceeEEEEEEC----------------C
Confidence 4677 9999999999999995421 10 0 012222222234444 7
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
..+++|||||+.+|.......++.+|++++|+|+++.-..... ..+..+.+ .+.|+++|+||+|+.
T Consensus 43 ~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 43 LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred EEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 8999999999999988888899999999999999864322222 22333332 236888999999986
No 174
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.32 E-value=1e-11 Score=115.26 Aligned_cols=112 Identities=23% Similarity=0.273 Sum_probs=75.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhcccee-cceEEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|.+|+|||||+++++... ....... |+. .....+... +
T Consensus 2 ~ki~i---~G~~~vGKTsl~~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~~--------------~ 46 (163)
T cd04136 2 YKVVV---LGSGGVGKSALTVQFVQGI--FVEKYDP----------------TIEDSYRKQIEVD--------------G 46 (163)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCC--CCcccCC----------------chhhhEEEEEEEC--------------C
Confidence 68899 9999999999999997432 1110000 110 001112222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~ 155 (584)
....+.||||||+.+|.......++.+|++++|+|..+.........| ..+.+ .++|+++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 47 QQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred EEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 256788999999999988888889999999999999875444333333 22221 367889999999986
No 175
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.32 E-value=6.6e-12 Score=121.34 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=73.6
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+++++...- ... +.+ .++.......+.+. +.
T Consensus 1 ~kI~i---vG~~~vGKTsLi~~~~~~~f--~~~---------~~p-----t~~~~~~~~~i~~~--------------~~ 47 (198)
T cd04142 1 VRVAV---LGAPGVGKTAIVRQFLAQEF--PEE---------YIP-----TEHRRLYRPAVVLS--------------GR 47 (198)
T ss_pred CEEEE---ECCCCCcHHHHHHHHHcCCC--Ccc---------cCC-----ccccccceeEEEEC--------------CE
Confidence 47888 99999999999999964211 000 000 01111111122333 22
Q ss_pred ceeEEEeCCCCCCCchH----H----HHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HH------hcCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVDFSS----E----VTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL------GERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~df~~----e----~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~------~~~~p~ivviNK~D 153 (584)
.+.++||||||+.+|.. + ...+++.+|++|+|+|+++..+.+....|.. +. ..++|+++|+||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 47899999999876521 1 3456789999999999998755554444432 22 24678999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 128 l~~ 130 (198)
T cd04142 128 QQR 130 (198)
T ss_pred ccc
Confidence 963
No 176
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.32 E-value=7e-12 Score=116.95 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=77.8
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|.+|+|||||+++|+...-.... ...++.+.....+... +
T Consensus 3 ~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~ 49 (165)
T cd01868 3 LFKIVL---IGDSGVGKSNLLSRFTRNEFNLDS----------------KSTIGVEFATRSIQID--------------G 49 (165)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhcCCCCCCC----------------CCccceEEEEEEEEEC--------------C
Confidence 578999 999999999999999643211000 0112222222223332 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh---cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~---~~~p~ivviNK~D~~ 155 (584)
....+++|||||+..|.......++.+|++|+|+|+++....+...-|.. +.+ .++|+++++||+|+.
T Consensus 50 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 50 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 24679999999999988888888999999999999986544444333422 211 257888999999986
No 177
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.32 E-value=8.8e-12 Score=119.70 Aligned_cols=115 Identities=19% Similarity=0.171 Sum_probs=75.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+.++....-....... .+..+.....+.+. +.
T Consensus 1 ~Ki~v---vG~~~vGKTSli~~~~~~~~~~~~~~~---------------t~~~~~~~~~~~~~--------------~~ 48 (191)
T cd04112 1 FKVML---LGDSGVGKTCLLVRFKDGAFLNGNFIA---------------TVGIDFRNKVVTVD--------------GV 48 (191)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCCCccCcCC---------------cccceeEEEEEEEC--------------CE
Confidence 47888 999999999999999643221100000 01111111112222 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHH---hcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~---~~~~p~ivviNK~D~~ 155 (584)
...++||||||+.+|.......++.+|++|+|+|+......+....|. .+. ..++|+++++||+|+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 578999999999999888888899999999999998754433333332 222 2367888999999986
No 178
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.32 E-value=8.8e-12 Score=116.03 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=69.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|++|+|||||+++|..... .. .....+.|. .
T Consensus 3 ~i~~---iG~~~~GKstl~~~l~~~~~-----------------------~~--~~~~~v~~~----------------~ 38 (158)
T PRK15467 3 RIAF---VGAVGAGKTTLFNALQGNYT-----------------------LA--RKTQAVEFN----------------D 38 (158)
T ss_pred EEEE---ECCCCCCHHHHHHHHcCCCc-----------------------cC--ccceEEEEC----------------C
Confidence 5888 99999999999999842100 00 011223343 1
Q ss_pred eeEEEeCCCCC----CCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 90 YLINLIDSPGH----VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~----~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
. ++|||||. .++..++..+++.+|++++|+|++++....+..++.. ..+.|+++++||+|+.
T Consensus 39 ~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 39 K--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMP 104 (158)
T ss_pred C--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccC
Confidence 1 37999996 4677777888999999999999998876655444332 3467889999999986
No 179
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.32 E-value=1.9e-11 Score=116.42 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=78.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|..|+|||||+.+|.. +... .. ..|+......+.+.
T Consensus 16 ~~~ki~i---vG~~~~GKTsl~~~l~~--~~~~----------~~-------~pt~g~~~~~~~~~-------------- 59 (181)
T PLN00223 16 KEMRILM---VGLDAAGKTTILYKLKL--GEIV----------TT-------IPTIGFNVETVEYK-------------- 59 (181)
T ss_pred CccEEEE---ECCCCCCHHHHHHHHcc--CCCc----------cc-------cCCcceeEEEEEEC--------------
Confidence 4579999 99999999999999942 1110 00 01222222234444
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+..|.......++.+|++|+|+|+++....... ..+..... .++|+++++||+|+..
T Consensus 60 --~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 60 --NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred --CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 78899999999999988888889999999999999875433222 22333222 3678899999999873
No 180
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.31 E-value=9.4e-12 Score=120.37 Aligned_cols=116 Identities=19% Similarity=0.185 Sum_probs=79.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|..|+|||||+++|+...- ... . ...++++.....+.+.
T Consensus 5 ~~~kivv---vG~~~vGKTsli~~l~~~~~--~~~---------~-----~~t~~~~~~~~~~~~~-------------- 51 (199)
T cd04110 5 HLFKLLI---IGDSGVGKSSLLLRFADNTF--SGS---------Y-----ITTIGVDFKIRTVEIN-------------- 51 (199)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHhcCCC--CCC---------c-----CccccceeEEEEEEEC--------------
Confidence 4689999 99999999999999964211 000 0 0011122222233332
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH---hcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
+....++||||||+..|.......++.+|++++|+|+++.-..+....|.... ....|+++|+||+|+.
T Consensus 52 ~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 52 GERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred CEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 22467899999999999888889999999999999998765544444443322 2357888999999986
No 181
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.31 E-value=1.1e-11 Score=115.90 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=69.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|++|+|||||+++|+...... +...+.|.......+.+. +
T Consensus 2 ~i~~---~G~~~~GKssli~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~----------------~ 46 (168)
T cd01897 2 TLVI---AGYPNVGKSSLVNKLTRAKPEV----------------APYPFTTKSLFVGHFDYK----------------Y 46 (168)
T ss_pred eEEE---EcCCCCCHHHHHHHHhcCCCcc----------------CCCCCcccceeEEEEccC----------------c
Confidence 5788 9999999999999996432110 001123333333333333 6
Q ss_pred eeEEEeCCCCCCCch--------HHHHHHh-hhcCeEEEEEeCCCCCch--hH-HHHHHHHHhc--CCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIEGVCV--QT-ETVLRQALGE--RIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~--------~e~~~~l-~~~D~ailvvda~~g~~~--~t-~~~l~~~~~~--~~p~ivviNK~D~~ 155 (584)
.+++||||||+.+.. .....++ ..+|++|+|+|+.+.... .. ...+..+... +.|+++++||+|+.
T Consensus 47 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 47 LRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred eEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC
Confidence 899999999985421 1122222 236899999999875321 11 2233343333 78999999999996
No 182
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.31 E-value=2.1e-11 Score=115.40 Aligned_cols=111 Identities=20% Similarity=0.167 Sum_probs=77.8
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|..|+|||||+.+|.. +.. .+.. .|+......+.+.
T Consensus 12 ~~~ki~l---~G~~~~GKTsL~~~~~~--~~~----------~~~~-------~t~~~~~~~~~~~-------------- 55 (175)
T smart00177 12 KEMRILM---VGLDAAGKTTILYKLKL--GES----------VTTI-------PTIGFNVETVTYK-------------- 55 (175)
T ss_pred CccEEEE---EcCCCCCHHHHHHHHhc--CCC----------CCcC-------CccccceEEEEEC--------------
Confidence 4589999 99999999999999942 111 0100 1222222233334
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCch-hHHHHHHHHHh----cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~-~t~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
...+.+|||||+.+|.......++.||++|+|+|+++.... .....|..+.+ .++|+++++||+|+.
T Consensus 56 --~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 56 --NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred --CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 68899999999999988888889999999999999864322 22334444332 257888999999986
No 183
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.31 E-value=1.8e-11 Score=118.72 Aligned_cols=116 Identities=24% Similarity=0.171 Sum_probs=73.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+........ . .+.|+......+.+.
T Consensus 40 ~~~~I~i---iG~~g~GKStLl~~l~~~~~~~~~-~---------------~~~t~~~~~~~~~~~-------------- 86 (204)
T cd01878 40 GIPTVAL---VGYTNAGKSTLFNALTGADVYAED-Q---------------LFATLDPTTRRLRLP-------------- 86 (204)
T ss_pred CCCeEEE---ECCCCCCHHHHHHHHhcchhccCC-c---------------cceeccceeEEEEec--------------
Confidence 3578999 999999999999999654211100 0 012333333333333
Q ss_pred CCceeEEEeCCCCCCCc-hHH-------HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH----HhcCCceEEEEecCcc
Q 007929 87 GNEYLINLIDSPGHVDF-SSE-------VTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDR 154 (584)
Q Consensus 87 ~~~~~inliDTPG~~df-~~e-------~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~----~~~~~p~ivviNK~D~ 154 (584)
+...+.+|||||+.+. ..+ +...+..+|++++|+|+.++........|..+ ...++|+++|+||+|+
T Consensus 87 -~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl 165 (204)
T cd01878 87 -DGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDL 165 (204)
T ss_pred -CCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcccc
Confidence 1348999999998542 111 22235679999999999987655444333322 2236789999999999
Q ss_pred cc
Q 007929 155 CF 156 (584)
Q Consensus 155 ~~ 156 (584)
..
T Consensus 166 ~~ 167 (204)
T cd01878 166 LD 167 (204)
T ss_pred CC
Confidence 73
No 184
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.31 E-value=1.4e-11 Score=115.47 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=77.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc-eEEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|.+|+|||||+++++...- .. ...+ |+... ...+.+. +
T Consensus 2 ~ki~l---iG~~~~GKTsli~~~~~~~~--~~---------~~~~-------t~~~~~~~~~~~~--------------~ 46 (168)
T cd04177 2 YKIVV---LGAGGVGKSALTVQFVQNVF--IE---------SYDP-------TIEDSYRKQVEID--------------G 46 (168)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCCC--Cc---------ccCC-------cchheEEEEEEEC--------------C
Confidence 68889 99999999999999963321 11 0000 11111 1122222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-----HhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-----LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-----~~~~~p~ivviNK~D~~ 155 (584)
....+.+|||||+.+|.......++.+|++++|+|..+.-..+...-|... ...++|+++++||+|+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 47 RQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 257889999999999999999999999999999999876444444333222 23478889999999986
No 185
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.30 E-value=1.6e-11 Score=114.34 Aligned_cols=112 Identities=22% Similarity=0.270 Sum_probs=75.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccce-ecceEEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI-KSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|.+|+|||||+.+++.. ........ |+ ......+... +
T Consensus 2 ~ki~i---~G~~~vGKTsl~~~~~~~--~~~~~~~~----------------t~~~~~~~~~~~~--------------~ 46 (163)
T cd04176 2 YKVVV---LGSGGVGKSALTVQFVSG--TFIEKYDP----------------TIEDFYRKEIEVD--------------S 46 (163)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHcC--CCCCCCCC----------------chhheEEEEEEEC--------------C
Confidence 68999 999999999999999642 11111000 11 0011112212 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHHh----cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~~----~~~p~ivviNK~D~~ 155 (584)
....+.||||||+..|.......++.+|++++|+|.++....+....|. .+.+ .++|+++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 47 SPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 2467889999999999888888899999999999998765444333332 2221 468899999999986
No 186
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.30 E-value=1.2e-11 Score=121.54 Aligned_cols=117 Identities=16% Similarity=0.151 Sum_probs=81.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|..|+|||||+.+++...- .. +...|+........+..
T Consensus 11 ~~~~Ki~v---vG~~gvGKTsli~~~~~~~f--~~----------------~~~~tig~~~~~~~~~~------------ 57 (219)
T PLN03071 11 YPSFKLVI---VGDGGTGKTTFVKRHLTGEF--EK----------------KYEPTIGVEVHPLDFFT------------ 57 (219)
T ss_pred CCceEEEE---ECcCCCCHHHHHHHHhhCCC--CC----------------ccCCccceeEEEEEEEE------------
Confidence 46689999 99999999999999864211 00 00122222222222210
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH---hcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
++....+++|||||+.+|.......++.+|++|+|+|.++....+...-|.... ..++|+++|+||+|+.
T Consensus 58 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 122578999999999999877777889999999999999876666655553322 2468899999999986
No 187
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.30 E-value=1.1e-11 Score=114.93 Aligned_cols=113 Identities=20% Similarity=0.242 Sum_probs=74.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|.+|+|||||+++|+...- .....+ +..+ .......+. +.
T Consensus 1 ~ki~~---~G~~~~GKTsl~~~l~~~~~--~~~~~~--~~~~-------------~~~~~~~~~--------------~~ 46 (164)
T cd04139 1 YKVIV---VGAGGVGKSALTLQFMYDEF--VEDYEP--TKAD-------------SYRKKVVLD--------------GE 46 (164)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCC--ccccCC--cchh-------------hEEEEEEEC--------------CE
Confidence 47888 99999999999999974321 111111 0000 000011111 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhH-HHHHHHHH----hcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t-~~~l~~~~----~~~~p~ivviNK~D~~ 155 (584)
...+.+|||||+.+|......+++.+|++++|+|..+.-.... ...+.... ..++|+++|+||+|+.
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 6789999999999999999999999999999999876432211 12222222 2478999999999986
No 188
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.30 E-value=1.2e-11 Score=115.57 Aligned_cols=114 Identities=12% Similarity=0.142 Sum_probs=75.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+++|+...- ... ..+ .++++.....+.. ++.
T Consensus 2 ~ki~i---~G~~~~GKSsli~~l~~~~~--~~~---------~~~-----t~~~~~~~~~~~~--------------~~~ 48 (165)
T cd01865 2 FKLLI---IGNSSVGKTSFLFRYADDSF--TSA---------FVS-----TVGIDFKVKTVFR--------------NDK 48 (165)
T ss_pred eEEEE---ECCCCCCHHHHHHHHhcCCC--CCC---------CCC-----ceeeEEEEEEEEE--------------CCE
Confidence 68999 99999999999999964211 000 000 0111111111111 122
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH-h---cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~-~---~~~p~ivviNK~D~~ 155 (584)
...+.+|||||+.+|.......++.+|++++|+|.++.-..+...-|.... + ...|+++++||+|+.
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 578999999999999888889999999999999998754444333343222 2 356788999999986
No 189
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.30 E-value=1.1e-11 Score=117.09 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=79.7
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhcccccCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~~~ 86 (584)
.++|++ +|..|+|||||+.+++... ...... .|+.... ..+.+.
T Consensus 2 ~~ki~v---vG~~~vGKTsL~~~~~~~~--f~~~~~----------------~t~~~~~~~~~~~~-------------- 46 (172)
T cd04141 2 EYKIVM---LGAGGVGKSAVTMQFISHS--FPDYHD----------------PTIEDAYKQQARID-------------- 46 (172)
T ss_pred ceEEEE---ECCCCCcHHHHHHHHHhCC--CCCCcC----------------CcccceEEEEEEEC--------------
Confidence 578999 9999999999999996421 111000 1111111 112222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-----HhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-----LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-----~~~~~p~ivviNK~D~~ 155 (584)
+....++||||||..+|.......++.+|++|+|+|..+....+...-|... ...++|+++|+||+|+.
T Consensus 47 ~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 47 NEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred CEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 2257899999999999998888999999999999999988777665544222 12468899999999986
No 190
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.30 E-value=2.3e-11 Score=115.23 Aligned_cols=126 Identities=19% Similarity=0.141 Sum_probs=79.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|..|+|||||++++....- ..... ..++.+.....+.+....+ . .....
T Consensus 3 ~~~ki~i---vG~~~vGKTsli~~~~~~~~--~~~~~--------------~t~~~~~~~~~~~~~~~~~--~--~~~~~ 59 (180)
T cd04127 3 YLIKFLA---LGDSGVGKTSFLYQYTDNKF--NPKFI--------------TTVGIDFREKRVVYNSSGP--G--GTLGR 59 (180)
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHhcCCC--CccCC--------------CccceEEEEEEEEEcCccc--c--ccccC
Confidence 3478999 99999999999999954211 00000 0111111111222220000 0 00001
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH-h----cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~-~----~~~p~ivviNK~D~~ 155 (584)
.....+.||||||+.+|.......++.+|++|+|+|+.+.-..+...-|.... . .+.|+++|.||+|+.
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 23578999999999999888899999999999999998765545444443222 2 256788999999986
No 191
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.29 E-value=1.9e-11 Score=112.29 Aligned_cols=108 Identities=21% Similarity=0.179 Sum_probs=75.5
Q ss_pred EEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCce
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (584)
|++ +|+.|+|||||+++|....-. .+.. .|+......+.+. +.
T Consensus 2 i~i---~G~~~~GKssl~~~l~~~~~~-----------~~~~-------~t~~~~~~~~~~~----------------~~ 44 (159)
T cd04159 2 ITL---VGLQNSGKTTLVNVIAGGQFS-----------EDTI-------PTVGFNMRKVTKG----------------NV 44 (159)
T ss_pred EEE---EcCCCCCHHHHHHHHccCCCC-----------cCcc-------CCCCcceEEEEEC----------------CE
Confidence 677 999999999999999532110 0110 1222222333333 57
Q ss_pred eEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchh-HHHHHHHHHh----cCCceEEEEecCccc
Q 007929 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 91 ~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~-t~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
.+.+|||||+..|.......++.+|++++|+|+.+..... ....+..+.. .++|+++++||+|..
T Consensus 45 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 45 TLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 8999999999999998999999999999999998643322 2233344332 467899999999986
No 192
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.29 E-value=1.8e-11 Score=115.08 Aligned_cols=131 Identities=20% Similarity=0.262 Sum_probs=80.4
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|.+ +|+.|||||+|...|.+....- ++ .++.. ...+... ...+
T Consensus 5 ~vlL---~Gps~SGKTaLf~~L~~~~~~~--------T~-----------tS~e~-n~~~~~~-------------~~~~ 48 (181)
T PF09439_consen 5 TVLL---VGPSGSGKTALFSQLVNGKTVP--------TV-----------TSMEN-NIAYNVN-------------NSKG 48 (181)
T ss_dssp EEEE---E-STTSSHHHHHHHHHHSS-----------B--------------SSE-EEECCGS-------------STCG
T ss_pred eEEE---EcCCCCCHHHHHHHHhcCCcCC--------ee-----------ccccC-CceEEee-------------cCCC
Confidence 5667 9999999999999996641110 00 12211 1111111 1235
Q ss_pred eeEEEeCCCCCCCchHHHHHH---hhhcCeEEEEEeCCCCCch---hHHHHHHHHH------hcCCceEEEEecCccccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAA---LRITDGALVVVDCIEGVCV---QTETVLRQAL------GERIRPVLTVNKMDRCFL 157 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~---l~~~D~ailvvda~~g~~~---~t~~~l~~~~------~~~~p~ivviNK~D~~~~ 157 (584)
..+.+||+|||..+....... +..+-++|+|||++. .+. .+.+.+..++ ..++|++|+.||.|+..
T Consensus 49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~- 126 (181)
T PF09439_consen 49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT- 126 (181)
T ss_dssp TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc-
Confidence 679999999999998887776 889999999999974 222 2222222221 24567779999999985
Q ss_pred cccCCHHHHHHHHHHHHHHHHHH
Q 007929 158 ELQVDGEEAYQTFQKVIENANVI 180 (584)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~v~~~ 180 (584)
..++..++..+++-++.++..
T Consensus 127 --A~~~~~Ik~~LE~Ei~~lr~t 147 (181)
T PF09439_consen 127 --AKPPKKIKKLLEKEIDKLRKT 147 (181)
T ss_dssp -----HHHHHHHHHHHHHHHHHC
T ss_pred --cCCHHHHHHHHHHHHHHHHHH
Confidence 556788888888888777643
No 193
>PRK04213 GTP-binding protein; Provisional
Probab=99.29 E-value=2e-11 Score=118.02 Aligned_cols=110 Identities=23% Similarity=0.196 Sum_probs=72.5
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|....- . .+...|+|.... .+.+
T Consensus 8 ~~~~i~i---~G~~~~GKSsLin~l~~~~~---~-------------~~~~~~~t~~~~--~~~~--------------- 51 (201)
T PRK04213 8 RKPEIVF---VGRSNVGKSTLVRELTGKKV---R-------------VGKRPGVTRKPN--HYDW--------------- 51 (201)
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCC---c-------------cCCCCceeeCce--EEee---------------
Confidence 4578999 99999999999999953211 0 111224444422 2221
Q ss_pred CCceeEEEeCCCCCCC-----------chHHHH----HHhhhcCeEEEEEeCCCC-----------CchhHHHHHHHHHh
Q 007929 87 GNEYLINLIDSPGHVD-----------FSSEVT----AALRITDGALVVVDCIEG-----------VCVQTETVLRQALG 140 (584)
Q Consensus 87 ~~~~~inliDTPG~~d-----------f~~e~~----~~l~~~D~ailvvda~~g-----------~~~~t~~~l~~~~~ 140 (584)
..+++|||||+.+ |...+. .++..+|++++|+|+... ....+..++..+..
T Consensus 52 ---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (201)
T PRK04213 52 ---GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE 128 (201)
T ss_pred ---cceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH
Confidence 1589999999633 222221 244567899999999653 22345666777666
Q ss_pred cCCceEEEEecCccc
Q 007929 141 ERIRPVLTVNKMDRC 155 (584)
Q Consensus 141 ~~~p~ivviNK~D~~ 155 (584)
.++|+++|+||+|+.
T Consensus 129 ~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 129 LGIPPIVAVNKMDKI 143 (201)
T ss_pred cCCCeEEEEECcccc
Confidence 789999999999986
No 194
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.29 E-value=1.3e-11 Score=114.92 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=76.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|.+|+|||||+.+|++....... +. -.|+........+.. ..+.
T Consensus 1 ~ki~v---vG~~~~GKtsl~~~l~~~~~~~~~--------------~~--~~t~~~~~~~~~~~~-----------~~~~ 50 (164)
T cd04101 1 LRCAV---VGDPAVGKTAFVQMFHSNGAVFPK--------------NY--LMTTGCDFVVKEVPV-----------DTDN 50 (164)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCCCcCc--------------cC--CCceEEEEEEEEEEe-----------CCCC
Confidence 47888 999999999999999643211111 00 112211111111110 0123
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-Hh--cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-LG--ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-~~--~~~p~ivviNK~D~~ 155 (584)
...+.+|||||+..|.......++.+|++++|+|.++.........|... .. .++|+++++||+|+.
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 57899999999999888888999999999999999875443333334332 22 358899999999986
No 195
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.29 E-value=4.5e-11 Score=117.19 Aligned_cols=110 Identities=17% Similarity=0.105 Sum_probs=78.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+.+|+...- .+. ..|+........+.
T Consensus 1 ~KIvi---vG~~~vGKTSLi~r~~~~~f------------~~~-------~~Tig~~~~~~~~~---------------- 42 (220)
T cd04126 1 LKVVL---LGDMNVGKTSLLHRYMERRF------------KDT-------VSTVGGAFYLKQWG---------------- 42 (220)
T ss_pred CEEEE---ECCCCCcHHHHHHHHhcCCC------------CCC-------CCccceEEEEEEee----------------
Confidence 47888 99999999999999964211 000 01232222223344
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~~ 156 (584)
.+.++||||||+..|.......++.+|++|+|+|.++.........| ..+.+ .++|+|+|.||+|+..
T Consensus 43 ~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 43 PYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 68899999999999988888889999999999999886555444333 22222 3578889999999863
No 196
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.28 E-value=3.7e-11 Score=111.38 Aligned_cols=109 Identities=28% Similarity=0.227 Sum_probs=73.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|..|+|||||+++|....-. . .. .|+......+.+. ..
T Consensus 1 ~i~i---~G~~~~GKTsl~~~~~~~~~~--~----------~~-------~t~~~~~~~~~~~---------------~~ 43 (160)
T cd04156 1 QVLL---LGLDSAGKSTLLYKLKHAELV--T----------TI-------PTVGFNVEMLQLE---------------KH 43 (160)
T ss_pred CEEE---EcCCCCCHHHHHHHHhcCCcc--c----------cc-------CccCcceEEEEeC---------------Cc
Confidence 3677 999999999999999643211 0 00 1111111112221 15
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
+.++++||||+..|.......++.+|++|+|+|+.+....... ..+....+ .+.|+++++||+|+.
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred eEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 7899999999999888888889999999999999876422221 22222222 478999999999986
No 197
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.28 E-value=2e-11 Score=115.75 Aligned_cols=113 Identities=20% Similarity=0.247 Sum_probs=77.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+|++ +|++|+|||||+++++...-. .. ..+ .+.......+.+. ..
T Consensus 2 ~kv~l---~G~~g~GKTtl~~~~~~~~~~-~~----------~~~------t~~~~~~~~~~~~--------------~~ 47 (180)
T cd04137 2 RKIAV---LGSRSVGKSSLTVQFVEGHFV-ES----------YYP------TIENTFSKIIRYK--------------GQ 47 (180)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCCCc-cc----------cCc------chhhhEEEEEEEC--------------CE
Confidence 57888 999999999999999743211 00 000 0000001112222 12
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~ 155 (584)
++.+.+|||||+.+|.......+..+|++++|+|..++...+....| ....+ .++|+++++||+|+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 57789999999999988888899999999999999987655555443 33322 367899999999986
No 198
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.28 E-value=4.4e-11 Score=114.01 Aligned_cols=111 Identities=20% Similarity=0.193 Sum_probs=76.5
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|..|+|||||+.++.. +.. .+.. .|+......+.+.
T Consensus 16 ~~~kv~l---vG~~~vGKTsli~~~~~--~~~----------~~~~-------~T~~~~~~~~~~~-------------- 59 (182)
T PTZ00133 16 KEVRILM---VGLDAAGKTTILYKLKL--GEV----------VTTI-------PTIGFNVETVEYK-------------- 59 (182)
T ss_pred CccEEEE---EcCCCCCHHHHHHHHhc--CCc----------cccC-------CccccceEEEEEC--------------
Confidence 4589999 99999999999999942 111 0000 1222222233344
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchh-HHHHHHHHHh----cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~-t~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
+..+++|||||+..|.......++.+|++|+|+|+++.-... ....+....+ ...|+++++||.|+.
T Consensus 60 --~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 60 --NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred --CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 688999999999998888888999999999999997532111 1223333322 257888999999986
No 199
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.28 E-value=4e-11 Score=114.97 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=81.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|..|+|||||+.++.... ... +....++.+....++...
T Consensus 5 ~~~Kivv---iG~~~vGKTsll~~~~~~~--~~~--------------~~~~t~~~~~~~~~i~~~-------------- 51 (189)
T cd04121 5 YLLKFLL---VGDSDVGKGEILASLQDGS--TES--------------PYGYNMGIDYKTTTILLD-------------- 51 (189)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHHcCC--CCC--------------CCCCcceeEEEEEEEEEC--------------
Confidence 4589999 9999999999999995321 100 001112222222222222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh---cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
+....+++|||||+.+|.......++.+|++|+|+|.++.-..+...-|..-.. .+.|++|+.||+|+.
T Consensus 52 ~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 52 GRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 225889999999999999888888899999999999998766655555533222 467889999999986
No 200
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.27 E-value=1.9e-11 Score=128.02 Aligned_cols=114 Identities=29% Similarity=0.265 Sum_probs=75.6
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|++|+|||||+++|.... .+..... +.|.+.....+.+.
T Consensus 189 ~~~Val---vG~~NvGKSSLln~L~~~~-~~v~~~~---------------~tT~d~~~~~i~~~--------------- 234 (351)
T TIGR03156 189 VPTVAL---VGYTNAGKSTLFNALTGAD-VYAADQL---------------FATLDPTTRRLDLP--------------- 234 (351)
T ss_pred CcEEEE---ECCCCCCHHHHHHHHhCCc-eeeccCC---------------ccccCCEEEEEEeC---------------
Confidence 478999 9999999999999996532 1111111 23444444444442
Q ss_pred CceeEEEeCCCCCC-CchH-------HHHHHhhhcCeEEEEEeCCCCCchhHHH----HHHHHHhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHV-DFSS-------EVTAALRITDGALVVVDCIEGVCVQTET----VLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~-df~~-------e~~~~l~~~D~ailvvda~~g~~~~t~~----~l~~~~~~~~p~ivviNK~D~~ 155 (584)
.+..+.|+||||.. +... .+...++.||++|+|+|+++........ ++..+...+.|+++|+||+|+.
T Consensus 235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 235 DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 15789999999982 2111 1233577899999999999876544332 2333223378899999999996
No 201
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.27 E-value=1.7e-11 Score=118.50 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=78.7
Q ss_pred ccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCceeEEEeC
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD 96 (584)
+|..|+|||||+.++++. .... ++..|+........+. .+.+...++|||
T Consensus 1 vG~~~vGKTsLi~r~~~~--~f~~----------------~~~~Tig~~~~~~~~~------------~~~~~~~l~iwD 50 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--EFEK----------------KYVATLGVEVHPLVFH------------TNRGPIRFNVWD 50 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--CCCC----------------CCCCceeEEEEEEEEE------------ECCEEEEEEEEE
Confidence 599999999999999632 1110 1123443322222222 012368899999
Q ss_pred CCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-Hh--cCCceEEEEecCccc
Q 007929 97 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-LG--ERIRPVLTVNKMDRC 155 (584)
Q Consensus 97 TPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-~~--~~~p~ivviNK~D~~ 155 (584)
|||+.+|.......++.+|++|+|+|.+...+.+....|..- .+ .++|+++|.||+|+.
T Consensus 51 t~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 51 TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred CCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999888999999999999999998777766666553 22 478899999999985
No 202
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.26 E-value=2.8e-11 Score=116.12 Aligned_cols=111 Identities=15% Similarity=0.256 Sum_probs=74.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc-eEEEEeecchhhhhcccccCCCC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
+|++ +|..|+|||||+++|++.. ....... |+... ...+... +.
T Consensus 1 ki~i---vG~~~vGKTsli~~l~~~~--f~~~~~~----------------t~~~~~~~~~~~~--------------~~ 45 (190)
T cd04144 1 KLVV---LGDGGVGKTALTIQLCLNH--FVETYDP----------------TIEDSYRKQVVVD--------------GQ 45 (190)
T ss_pred CEEE---ECCCCCCHHHHHHHHHhCC--CCccCCC----------------chHhhEEEEEEEC--------------CE
Confidence 4777 9999999999999996422 1111010 11100 0111122 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh------cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG------ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~------~~~p~ivviNK~D~~ 155 (584)
...+.||||||+.+|.......++.+|++|+|+|.++.........|.. +.. .++|+++++||+|+.
T Consensus 46 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 4678999999999999988899999999999999987654444333322 211 357888999999986
No 203
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.26 E-value=1.9e-11 Score=115.17 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=75.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceE--EEEeecchhhhhcccccCCC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI--SLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~--~~~~~~~~~~~~~~~~~~~~ 87 (584)
+|++ +|..|+|||||+++++...- .. +...|+..... .+... +
T Consensus 2 ki~i---vG~~~vGKTsli~~~~~~~f--~~----------------~~~~t~~~~~~~~~~~~~--------------~ 46 (170)
T cd04108 2 KVIV---VGDLSVGKTCLINRFCKDVF--DK----------------NYKATIGVDFEMERFEIL--------------G 46 (170)
T ss_pred EEEE---ECCCCCCHHHHHHHHhcCCC--CC----------------CCCCceeeEEEEEEEEEC--------------C
Confidence 5778 99999999999999964311 10 00112222211 12222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHhc----CCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALGE----RIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~~----~~p~ivviNK~D~~ 155 (584)
....+++|||||+.+|.......++.+|++++|+|+.+........-|.. ..+. ..|+++|.||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 47 VPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 35789999999999998888889999999999999987544444444433 2222 23467999999985
No 204
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.26 E-value=6.6e-11 Score=113.70 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=75.8
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
+....+|++ +|++|+|||||+++|+.... +.. .....|.|...... .+
T Consensus 21 ~~~~~~v~i---vG~~~~GKSsli~~l~~~~~-~~~-------------~~~~~~~t~~~~~~--~~------------- 68 (196)
T PRK00454 21 PDDGPEIAF---AGRSNVGKSSLINALTNRKN-LAR-------------TSKTPGRTQLINFF--EV------------- 68 (196)
T ss_pred CCCCCEEEE---EcCCCCCHHHHHHHHhCCCC-ccc-------------ccCCCCceeEEEEE--ec-------------
Confidence 345678999 99999999999999975321 000 00011233322111 11
Q ss_pred CCCCceeEEEeCCCCCC----------CchHHHHHHhhh---cCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEec
Q 007929 85 RQGNEYLINLIDSPGHV----------DFSSEVTAALRI---TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 151 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~----------df~~e~~~~l~~---~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK 151 (584)
+..+.||||||+. +|.......++. ++++++|+|+..+.......+++.+...++|+++++||
T Consensus 69 ----~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK 144 (196)
T PRK00454 69 ----NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTK 144 (196)
T ss_pred ----CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEEC
Confidence 3679999999963 232333334443 46788899998887776666666666678899999999
Q ss_pred Ccccc
Q 007929 152 MDRCF 156 (584)
Q Consensus 152 ~D~~~ 156 (584)
+|+..
T Consensus 145 ~Dl~~ 149 (196)
T PRK00454 145 ADKLK 149 (196)
T ss_pred cccCC
Confidence 99863
No 205
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.26 E-value=3.4e-11 Score=113.26 Aligned_cols=112 Identities=15% Similarity=0.081 Sum_probs=77.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|....-.. . ..|.......+.+.
T Consensus 12 ~~~~~v~i---~G~~g~GKStLl~~l~~~~~~~------------~-------~~t~g~~~~~i~~~------------- 56 (173)
T cd04155 12 SEEPRILI---LGLDNAGKTTILKQLASEDISH------------I-------TPTQGFNIKTVQSD------------- 56 (173)
T ss_pred CCccEEEE---EccCCCCHHHHHHHHhcCCCcc------------c-------CCCCCcceEEEEEC-------------
Confidence 35688999 9999999999999995321100 0 01111112233444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchh-HHHHHHHH----HhcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQA----LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~-t~~~l~~~----~~~~~p~ivviNK~D~~ 155 (584)
+..+++|||||+..|...+...++.+|++++|+|+.+..... ....+... ...++|+++++||+|+.
T Consensus 57 ---~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 57 ---GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 688999999999999888888899999999999998642221 12222222 23468999999999986
No 206
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.26 E-value=1.9e-11 Score=115.14 Aligned_cols=112 Identities=19% Similarity=0.239 Sum_probs=75.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhcccee-cceEEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|++|+|||||+.++++..- ..... .|+. .....+.+. +
T Consensus 1 ~ki~i---~G~~~~GKTsl~~~~~~~~~--~~~~~----------------~t~~~~~~~~~~~~--------------~ 45 (174)
T cd04135 1 LKCVV---VGDGAVGKTCLLMSYANDAF--PEEYV----------------PTVFDHYAVSVTVG--------------G 45 (174)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCC--CCCCC----------------CceeeeeEEEEEEC--------------C
Confidence 47889 99999999999999965321 11000 0111 001112222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHH---HhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQA---LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~---~~~~~p~ivviNK~D~~ 155 (584)
..+.+++|||||+.+|.......++.+|++++|+|..+.-..+... .|... ...++|+++++||+|+.
T Consensus 46 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 46 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 2577899999999998887777888999999999998765444332 23222 23578899999999986
No 207
>PLN03110 Rab GTPase; Provisional
Probab=99.25 E-value=2.6e-11 Score=118.88 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=80.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|+...-.. +....+.++.....+.+.
T Consensus 11 ~~~Ki~i---vG~~~vGKStLi~~l~~~~~~~----------------~~~~t~g~~~~~~~v~~~-------------- 57 (216)
T PLN03110 11 YLFKIVL---IGDSGVGKSNILSRFTRNEFCL----------------ESKSTIGVEFATRTLQVE-------------- 57 (216)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHhcCCCCC----------------CCCCceeEEEEEEEEEEC--------------
Confidence 4579999 9999999999999996432110 000111122222223222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HH---hcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~---~~~~p~ivviNK~D~~ 155 (584)
+....++||||||+.+|.......++.+|++|+|+|..+....+....|.. +. ..++|+++++||+|+.
T Consensus 58 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 58 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred CEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 225789999999999999888889999999999999987655554444432 22 2368889999999985
No 208
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.25 E-value=3.7e-11 Score=110.92 Aligned_cols=112 Identities=24% Similarity=0.286 Sum_probs=74.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|+.|+|||||+++|+.... ... ..+. +.......+.+. +..
T Consensus 1 ki~i---~G~~~~GKTsli~~l~~~~~--~~~---------~~~~------~~~~~~~~~~~~--------------~~~ 46 (160)
T cd00876 1 KVVV---LGAGGVGKSAITIQFVKGTF--VEE---------YDPT------IEDSYRKTIVVD--------------GET 46 (160)
T ss_pred CEEE---ECCCCCCHHHHHHHHHhCCC--CcC---------cCCC------hhHeEEEEEEEC--------------CEE
Confidence 4778 99999999999999974321 100 0110 001111122222 125
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhH-HHHHHHHHh----cCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t-~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
+.+++|||||+.++.......++.+|++++|+|..+.-.... ...|..+.. .++|+++++||+|+.
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 789999999999998888899999999999999876533222 223333222 368889999999997
No 209
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.25 E-value=8.1e-11 Score=110.64 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=92.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccc-cccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~-~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
....||+ +|++|+|||||+|+|..+.+... ...+ |.|..... |.+.
T Consensus 23 ~~~EIaF---~GRSNVGKSSlIN~l~~~k~LArtSktP---------------GrTq~iNf--f~~~------------- 69 (200)
T COG0218 23 DLPEIAF---AGRSNVGKSSLINALTNQKNLARTSKTP---------------GRTQLINF--FEVD------------- 69 (200)
T ss_pred CCcEEEE---EccCcccHHHHHHHHhCCcceeecCCCC---------------CccceeEE--EEec-------------
Confidence 4568999 99999999999999976544221 1122 34555443 3333
Q ss_pred CCCceeEEEeCCCCCC----------CchHHHHHHhh---hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecC
Q 007929 86 QGNEYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (584)
Q Consensus 86 ~~~~~~inliDTPG~~----------df~~e~~~~l~---~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~ 152 (584)
-.+.++|.||+. .+...+...+. ...++++++|+.+++...+.+++..+...++|+++++||+
T Consensus 70 ----~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~ 145 (200)
T COG0218 70 ----DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKA 145 (200)
T ss_pred ----CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 338899999973 23334445553 4678999999999999999999999999999999999999
Q ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHH
Q 007929 153 DRCFLELQVDGEEAYQTFQKVIENANVIM 181 (584)
Q Consensus 153 D~~~~~~~~~~~~~~~~~~~~l~~v~~~l 181 (584)
|+.. . ....+.+..++..+
T Consensus 146 DKi~------~----~~~~k~l~~v~~~l 164 (200)
T COG0218 146 DKLK------K----SERNKQLNKVAEEL 164 (200)
T ss_pred ccCC------h----hHHHHHHHHHHHHh
Confidence 9984 1 33445556666555
No 210
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.25 E-value=2.7e-11 Score=118.66 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=75.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|.+|+|||||+++|+...- .. +...-++.+.....+.+. +..
T Consensus 1 ~Ki~i---vG~~~vGKSsLi~~l~~~~~--~~--------------~~~~T~~~d~~~~~i~~~-------------~~~ 48 (215)
T cd04109 1 FKIVV---LGDGAVGKTSLCRRFAKEGF--GK--------------SYKQTIGLDFFSKRVTLP-------------GNL 48 (215)
T ss_pred CEEEE---ECcCCCCHHHHHHHHhcCCC--CC--------------CCCCceeEEEEEEEEEeC-------------CCC
Confidence 47888 99999999999999964211 00 000011222212222222 122
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh-------cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-------ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~-------~~~p~ivviNK~D~~ 155 (584)
...++||||||+..|.......++.+|++|+|+|+++.-.......|..... .+.|+++|.||+|+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 5789999999999888888888999999999999987644444433433221 134577899999986
No 211
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.24 E-value=2.6e-11 Score=114.78 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=77.9
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhcccccCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~~~ 86 (584)
+++|++ +|..|+|||||+.++++.. .... + ..|+.... ..+...
T Consensus 1 ~~ki~v---vG~~~vGKTsl~~~~~~~~--f~~~---------~-------~pt~~~~~~~~~~~~-------------- 45 (175)
T cd01874 1 TIKCVV---VGDGAVGKTCLLISYTTNK--FPSE---------Y-------VPTVFDNYAVTVMIG-------------- 45 (175)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHcCC--CCCC---------C-------CCceeeeeEEEEEEC--------------
Confidence 478999 9999999999999996421 1110 0 01221111 112222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHH---hcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
+..+.++||||||+.+|.......++.+|++|+|+|.++....+... .|.... ..++|++++.||+|+.
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (175)
T cd01874 46 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred CEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 22578999999999999877777889999999999998875555443 353322 2367899999999986
No 212
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.24 E-value=4.4e-11 Score=112.47 Aligned_cols=109 Identities=22% Similarity=0.190 Sum_probs=68.8
Q ss_pred ccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCceeEEEeC
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD 96 (584)
+|+.|+|||||+++|....-.+ .. ..+.|+......+.+. .+..+++||
T Consensus 2 iG~~~~GKStll~~l~~~~~~~-~~---------------~~~~t~~~~~~~~~~~---------------~~~~~~i~D 50 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKPKV-AN---------------YPFTTLEPNLGVVEVP---------------DGARIQVAD 50 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCccc-cC---------------CCceeecCcceEEEcC---------------CCCeEEEEe
Confidence 8999999999999996432100 00 1123333333333332 157899999
Q ss_pred CCCCCC-------chHHHHHHhhhcCeEEEEEeCCCCC------chhHHHHH-HHHH----------hcCCceEEEEecC
Q 007929 97 SPGHVD-------FSSEVTAALRITDGALVVVDCIEGV------CVQTETVL-RQAL----------GERIRPVLTVNKM 152 (584)
Q Consensus 97 TPG~~d-------f~~e~~~~l~~~D~ailvvda~~g~------~~~t~~~l-~~~~----------~~~~p~ivviNK~ 152 (584)
|||+.+ +.......++.+|++++|+|+.... .......| ..+. ..++|+++++||+
T Consensus 51 tpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~ 130 (176)
T cd01881 51 IPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKI 130 (176)
T ss_pred ccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEch
Confidence 999843 2234456678899999999998763 22222222 2211 1368899999999
Q ss_pred cccc
Q 007929 153 DRCF 156 (584)
Q Consensus 153 D~~~ 156 (584)
|+..
T Consensus 131 Dl~~ 134 (176)
T cd01881 131 DLDD 134 (176)
T ss_pred hcCc
Confidence 9973
No 213
>PLN03108 Rab family protein; Provisional
Probab=99.24 E-value=1.2e-10 Score=113.56 Aligned_cols=116 Identities=18% Similarity=0.123 Sum_probs=78.6
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|+...-... +. ..+..+.....+.+.
T Consensus 5 ~~~kivi---vG~~gvGKStLi~~l~~~~~~~~-----------~~-----~ti~~~~~~~~i~~~-------------- 51 (210)
T PLN03108 5 YLFKYII---IGDTGVGKSCLLLQFTDKRFQPV-----------HD-----LTIGVEFGARMITID-------------- 51 (210)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHHhCCCCCC-----------CC-----CCccceEEEEEEEEC--------------
Confidence 4589999 99999999999999964321100 00 001111111122222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HH---hcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~---~~~~p~ivviNK~D~~ 155 (584)
+....+++|||||+.+|.......++.+|++|+|+|++.....+....|.. +. ...+|++++.||+|+.
T Consensus 52 ~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 52 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 225678999999999998888888999999999999987655444434432 22 2367889999999986
No 214
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.24 E-value=4.4e-11 Score=114.79 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=75.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceE--EEEeecchhhhhcccccCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI--SLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~--~~~~~~~~~~~~~~~~~~~ 86 (584)
++|++ +|++|+|||||+++|+...-... .. .-|+..... .+...
T Consensus 1 ~ki~v---vG~~~vGKSsLi~~~~~~~~~~~-~~----------------~~t~~~~~~~~~~~~~-------------- 46 (193)
T cd04118 1 VKVVM---LGKESVGKTSLVERYVHHRFLVG-PY----------------QNTIGAAFVAKRMVVG-------------- 46 (193)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCcCCc-Cc----------------ccceeeEEEEEEEEEC--------------
Confidence 47888 99999999999999964321100 00 012221111 12222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH---hcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
+....+++|||||..+|.......++.+|++++|+|.++....+....|.... ..+.|+++|+||+|+.
T Consensus 47 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 47 ERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred CEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 23567889999999988777777888999999999998764444333343322 2367899999999986
No 215
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.23 E-value=1.2e-11 Score=112.52 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=66.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|++|+|||||+++|....- ....| ....|. .
T Consensus 2 kv~l---iG~~~vGKSsL~~~l~~~~~--------------------~~~~t-----~~~~~~----------------~ 37 (142)
T TIGR02528 2 RIMF---IGSVGCGKTTLTQALQGEEI--------------------LYKKT-----QAVEYN----------------D 37 (142)
T ss_pred eEEE---ECCCCCCHHHHHHHHcCCcc--------------------ccccc-----eeEEEc----------------C
Confidence 6888 99999999999999953210 00011 123333 2
Q ss_pred eeEEEeCCCCCC----CchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHV----DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~----df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
.+|||||.. .+...+..+++.+|++++|+|+.++.+.+....+.. ...|+++++||+|+.
T Consensus 38 ---~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 38 ---GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred ---eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 689999983 334444456889999999999999887766533322 234888999999986
No 216
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.23 E-value=3.5e-11 Score=112.70 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=74.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+++|+...-. ..... ...........+. +.
T Consensus 1 iki~i---~G~~~~GKSsli~~l~~~~~~--~~~~~---------------~~~~~~~~~~~~~--------------~~ 46 (171)
T cd00157 1 IKIVV---VGDGAVGKTCLLISYTTGKFP--TEYVP---------------TVFDNYSATVTVD--------------GK 46 (171)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCCC--CCCCC---------------ceeeeeEEEEEEC--------------CE
Confidence 57888 999999999999999653210 00000 0001111111111 23
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHH-HH--hcCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-AL--GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~-~~--~~~~p~ivviNK~D~~~ 156 (584)
.+.+.+|||||+.+|.......++.+|++++|+|+.+....+.. ..|.. .. ..++|+++++||+|+..
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRD 118 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhh
Confidence 67899999999998876666777899999999999875433332 22322 22 23589999999999873
No 217
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.23 E-value=1.2e-10 Score=112.32 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=80.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|++|+|||||+|+|++........ ..++.|.........|.
T Consensus 1 ~~i~l---vG~~g~GKSsl~N~ilg~~~~~~~~--------------~~~~~T~~~~~~~~~~~---------------- 47 (196)
T cd01852 1 LRLVL---VGKTGAGKSATGNTILGREVFESKL--------------SASSVTKTCQKESAVWD---------------- 47 (196)
T ss_pred CEEEE---ECCCCCCHHHHHHHhhCCCcccccc--------------CCCCcccccceeeEEEC----------------
Confidence 36888 9999999999999998765432221 12245666666666666
Q ss_pred ceeEEEeCCCCCCCch-------HHHHHHh----hhcCeEEEEEeCCCCCchhHHHHHHHHHhc-----CCceEEEEecC
Q 007929 89 EYLINLIDSPGHVDFS-------SEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVNKM 152 (584)
Q Consensus 89 ~~~inliDTPG~~df~-------~e~~~~l----~~~D~ailvvda~~g~~~~t~~~l~~~~~~-----~~p~ivviNK~ 152 (584)
+..+++|||||..++. .++.+.+ ..+|++|+|+|+.. .......+++.+.+. ..++++++|+.
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 7899999999987753 2233322 34689999999987 666777777665432 24678999999
Q ss_pred cccc
Q 007929 153 DRCF 156 (584)
Q Consensus 153 D~~~ 156 (584)
|...
T Consensus 127 d~l~ 130 (196)
T cd01852 127 DDLE 130 (196)
T ss_pred cccC
Confidence 9874
No 218
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.21 E-value=7.5e-11 Score=112.56 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=75.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceE-EEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~-~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|..|+|||||+++|+...- ..... .|+..... .+... ++
T Consensus 1 ~ki~v---vG~~~vGKTsli~~l~~~~~--~~~~~----------------~t~~~~~~~~i~~~-------------~~ 46 (187)
T cd04132 1 KKIVV---VGDGGCGKTCLLIVYSQGKF--PEEYV----------------PTVFENYVTNIQGP-------------NG 46 (187)
T ss_pred CeEEE---ECCCCCCHHHHHHHHHhCcC--CCCCC----------------CeeeeeeEEEEEec-------------CC
Confidence 47888 99999999999999964321 00000 11111111 11111 12
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHH---hcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
....+.+|||||+.+|.......++.+|++|+|+|.++....+... .|.... ..++|+++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 47 KIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred cEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 3567999999999999887777889999999999998765544432 343322 2468899999999986
No 219
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.20 E-value=6.8e-11 Score=113.13 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=76.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+++|+...- .. .+.+ .++.+.....+... +.
T Consensus 1 ~ki~v---~G~~~vGKSsli~~~~~~~~--~~---------~~~~-----t~~~~~~~~~~~~~--------------~~ 47 (188)
T cd04125 1 FKVVI---IGDYGVGKSSLLKRFTEDEF--SE---------STKS-----TIGVDFKIKTVYIE--------------NK 47 (188)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCC--CC---------CCCC-----ceeeEEEEEEEEEC--------------CE
Confidence 47889 99999999999999963211 00 0000 01111111122222 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~----~~~~p~ivviNK~D~~ 155 (584)
...+.+|||||+.+|.......++.+|++|+|+|+.+.-.......|.... ....|+++++||+|+.
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 577899999999999888899999999999999998765444443443222 2356788999999986
No 220
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.20 E-value=9.5e-11 Score=113.38 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=80.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce--EEEEeecchhhhhcccccCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~--~~~~~~~~~~~~~~~~~~~~ 86 (584)
++|++ +|..++|||||+.+++...- .. +...|+.... ..+.+.. ...+
T Consensus 1 vKIvl---vGd~gVGKTSLi~~~~~~~f--~~----------------~~~~Tig~~~~~k~~~~~~---------~~~~ 50 (202)
T cd04102 1 VRVLV---VGDSGVGKSSLVHLICKNQV--LG----------------RPSWTVGCSVDVKHHTYKE---------GTPE 50 (202)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcCCC--CC----------------CCCcceeeeEEEEEEEEcC---------CCCC
Confidence 47888 99999999999999964211 00 0012222111 1122210 0012
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH-h----------------------cCC
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G----------------------ERI 143 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~-~----------------------~~~ 143 (584)
+..+.++||||+|+.+|.......++.+|++|+|+|.+.....+....|..-. . .++
T Consensus 51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T cd04102 51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQI 130 (202)
T ss_pred CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCc
Confidence 33678999999999999888888899999999999999887666666663322 1 257
Q ss_pred ceEEEEecCccc
Q 007929 144 RPVLTVNKMDRC 155 (584)
Q Consensus 144 p~ivviNK~D~~ 155 (584)
|+++|.||+|+.
T Consensus 131 PiilVGnK~Dl~ 142 (202)
T cd04102 131 PLLVIGTKLDQI 142 (202)
T ss_pred eEEEEEECccch
Confidence 889999999986
No 221
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.20 E-value=5.5e-11 Score=107.27 Aligned_cols=109 Identities=22% Similarity=0.243 Sum_probs=77.1
Q ss_pred ccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccce-ecceEEEEeecchhhhhcccccCCCCceeEEEe
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI-KSTGISLYYEMTDAALKSYRGERQGNEYLINLI 95 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inli 95 (584)
+|+.|+|||||+++|........ .+..|. ......+... ..+..++++
T Consensus 2 iG~~~~GKStl~~~l~~~~~~~~-----------------~~~~t~~~~~~~~~~~~--------------~~~~~~~l~ 50 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEFVPE-----------------EYETTIIDFYSKTIEVD--------------GKKVKLQIW 50 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCcCCc-----------------ccccchhheeeEEEEEC--------------CEEEEEEEE
Confidence 89999999999999965433100 011111 1111222211 126789999
Q ss_pred CCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-----HHHHhcCCceEEEEecCcccc
Q 007929 96 DSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 96 DTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-----~~~~~~~~p~ivviNK~D~~~ 156 (584)
||||+.++.......++.+|++++|+|+..+........| ......++|+++++||+|+..
T Consensus 51 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 51 DTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred ecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 9999999888888899999999999999988766665544 223456888999999999974
No 222
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.20 E-value=3e-10 Score=115.23 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=79.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|+...-.... ... +...++..+.+++......+...
T Consensus 3 ~~f~I~v---vG~sg~GKSTliN~L~~~~~~~~~-~~~-----~~~~~~~~~T~~i~~~~~~i~~~-------------- 59 (276)
T cd01850 3 FQFNIMV---VGESGLGKSTFINTLFNTKLIPSD-YPP-----DPAEEHIDKTVEIKSSKAEIEEN-------------- 59 (276)
T ss_pred cEEEEEE---EcCCCCCHHHHHHHHHcCCCcccc-CCC-----CccccccCCceEEEEEEEEEEEC--------------
Confidence 3578888 999999999999999654322111 100 00111122222333333333332
Q ss_pred CCceeEEEeCCCCCCCchHH---------------------HHHHhh-------hcCeEEEEEeCCC-CCchhHHHHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSE---------------------VTAALR-------ITDGALVVVDCIE-GVCVQTETVLRQ 137 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e---------------------~~~~l~-------~~D~ailvvda~~-g~~~~t~~~l~~ 137 (584)
+...++++|||||..|+... .....+ .+|++++++++.. ++......+++.
T Consensus 60 g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~ 139 (276)
T cd01850 60 GVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKR 139 (276)
T ss_pred CEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 22467999999998776431 111112 4688999999874 777777888888
Q ss_pred HHhcCCceEEEEecCccc
Q 007929 138 ALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 138 ~~~~~~p~ivviNK~D~~ 155 (584)
+. .++|+++|+||+|+.
T Consensus 140 l~-~~v~vi~VinK~D~l 156 (276)
T cd01850 140 LS-KRVNIIPVIAKADTL 156 (276)
T ss_pred Hh-ccCCEEEEEECCCcC
Confidence 65 488999999999996
No 223
>PRK11058 GTPase HflX; Provisional
Probab=99.20 E-value=9.1e-11 Score=125.76 Aligned_cols=113 Identities=26% Similarity=0.171 Sum_probs=75.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
..|++ +|.+|+|||||+++|...... .. | ..+.|++.....+.+..
T Consensus 198 p~Val---VG~~NaGKSSLlN~Lt~~~~~-v~---------~------~~~tTld~~~~~i~l~~--------------- 243 (426)
T PRK11058 198 PTVSL---VGYTNAGKSTLFNRITEARVY-AA---------D------QLFATLDPTLRRIDVAD--------------- 243 (426)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCcee-ec---------c------CCCCCcCCceEEEEeCC---------------
Confidence 47888 999999999999999543211 00 1 11345555444555541
Q ss_pred ceeEEEeCCCCCCCc--------hHHHHHHhhhcCeEEEEEeCCCCCchhHHH----HHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTET----VLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df--------~~e~~~~l~~~D~ailvvda~~g~~~~t~~----~l~~~~~~~~p~ivviNK~D~~ 155 (584)
...+.++||||.... ...+...++.||++|+|+|+++........ ++..+...++|+++|+||+|+.
T Consensus 244 ~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 244 VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 237899999998442 112344567899999999999875444332 3343333478999999999986
No 224
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.19 E-value=1.2e-10 Score=110.18 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=76.9
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc-eEEEEeecchhhhhcccccCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~-~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+++|++ +|..|+|||||+.+++... ..... ..|+... ...+...
T Consensus 1 ~~ki~i---iG~~~vGKSsli~~~~~~~--f~~~~----------------~~t~~~~~~~~~~~~-------------- 45 (174)
T cd01871 1 AIKCVV---VGDGAVGKTCLLISYTTNA--FPGEY----------------IPTVFDNYSANVMVD-------------- 45 (174)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHhcCC--CCCcC----------------CCcceeeeEEEEEEC--------------
Confidence 368999 9999999999999996421 11100 0111111 0111122
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
++...+.||||||+.+|.......++.+|++|+|+|.++.-+.+.. ..|..... .++|+++|.||+|+.
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 46 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred CEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 2357899999999999988778888999999999999876555444 23433222 367899999999986
No 225
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.19 E-value=9e-11 Score=110.41 Aligned_cols=115 Identities=17% Similarity=0.067 Sum_probs=76.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccc-cccCCCeeeeCChhhHhhhccceecce--EEEEeecchhhhhccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYR 82 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~-~~~~g~~~~~D~~~~E~~r~~Ti~~~~--~~~~~~~~~~~~~~~~ 82 (584)
.++++|++ +|..|+|||||+.+++... .. .... -|+.... -.+.+.
T Consensus 2 ~~~~kv~~---vG~~~vGKTsli~~~~~~~--f~~~~~~----------------~T~~~~~~~~~~~~~---------- 50 (169)
T cd01892 2 RNVFLCFV---LGAKGSGKSALLRAFLGRS--FSLNAYS----------------PTIKPRYAVNTVEVY---------- 50 (169)
T ss_pred CeEEEEEE---ECCCCCcHHHHHHHHhCCC--CCcccCC----------------CccCcceEEEEEEEC----------
Confidence 46789999 9999999999999996421 11 0000 1221111 112222
Q ss_pred ccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHH-hcCCceEEEEecCccc
Q 007929 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL-GERIRPVLTVNKMDRC 155 (584)
Q Consensus 83 ~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~-~~~~p~ivviNK~D~~ 155 (584)
+....+.++||+|...|.......++.+|++|+|+|+++.-.......| .... ..++|+++|+||+|+.
T Consensus 51 ----~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 51 ----GQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred ----CeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 2246789999999999887777788999999999999875333322222 2221 2368899999999986
No 226
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.19 E-value=2.5e-11 Score=108.17 Aligned_cols=120 Identities=21% Similarity=0.211 Sum_probs=86.8
Q ss_pred ccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccc
Q 007929 3 SYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (584)
Q Consensus 3 ~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~ 82 (584)
+-..++++|.+ +|..|+|||+|+-++.... ...+....|.++...-.....
T Consensus 6 s~~~~t~KiLl---IGeSGVGKSSLllrFv~~~----------------fd~~~~~tIGvDFkvk~m~vd---------- 56 (209)
T KOG0080|consen 6 SGYDTTFKILL---IGESGVGKSSLLLRFVSNT----------------FDDLHPTTIGVDFKVKVMQVD---------- 56 (209)
T ss_pred cCcceeEEEEE---EccCCccHHHHHHHHHhcc----------------cCccCCceeeeeEEEEEEEEc----------
Confidence 34678999999 9999999999999984321 111122112333322222222
Q ss_pred ccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh-----cCCceEEEEecCccc
Q 007929 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 83 ~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~-----~~~p~ivviNK~D~~ 155 (584)
++.+++.||||+|++.|...+.+..|.|-|+|+|.|.+......-..+|..-+. .++..++|.||+|+.
T Consensus 57 ----g~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 57 ----GKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred ----CceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 458999999999999999999999999999999999998777666677744322 233445899999987
No 227
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.18 E-value=3.9e-11 Score=105.62 Aligned_cols=113 Identities=21% Similarity=0.226 Sum_probs=70.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|+| +|+.|+|||||+++|+..... +....+...+.++.......... .
T Consensus 1 kI~V---~G~~g~GKTsLi~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~----------------~ 49 (119)
T PF08477_consen 1 KIVV---LGDSGVGKTSLIRRLCGGEFP------------DNSVPEETSEITIGVDVIVVDGD----------------R 49 (119)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETTE----------------E
T ss_pred CEEE---ECcCCCCHHHHHHHHhcCCCc------------ccccccccCCCcEEEEEEEecCC----------------c
Confidence 5777 999999999999999765432 00011111122332222222222 4
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HH---HHHHH--hcCCceEEEEecCc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TV---LRQAL--GERIRPVLTVNKMD 153 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~---l~~~~--~~~~p~ivviNK~D 153 (584)
..+.++|++|...+.......+..+|++++|+|.++.-..+-. .+ +.... ..++|++++.||.|
T Consensus 50 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 50 QSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred eEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 5699999999988877666669999999999999875433322 22 12211 24689999999998
No 228
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.18 E-value=2.4e-10 Score=114.21 Aligned_cols=112 Identities=18% Similarity=0.239 Sum_probs=75.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhcccee-cceEEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|..|+|||||+++++... ...... .|+. .....+... +
T Consensus 1 ~KVvv---lG~~gvGKTSLi~r~~~~~--f~~~y~----------------pTi~d~~~k~~~i~--------------~ 45 (247)
T cd04143 1 YRMVV---LGASKVGKTAIVSRFLGGR--FEEQYT----------------PTIEDFHRKLYSIR--------------G 45 (247)
T ss_pred CEEEE---ECcCCCCHHHHHHHHHcCC--CCCCCC----------------CChhHhEEEEEEEC--------------C
Confidence 47888 9999999999999996421 110000 1111 111112222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh------------cCCceEEEEecCcc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------------ERIRPVLTVNKMDR 154 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~------------~~~p~ivviNK~D~ 154 (584)
..+.++||||+|+.+|.......++.+|++|+|+|..+....+...-| .++.. .++|+++++||+|+
T Consensus 46 ~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl 125 (247)
T cd04143 46 EVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADR 125 (247)
T ss_pred EEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccc
Confidence 258899999999999987777778899999999999876544433333 22221 36789999999999
Q ss_pred c
Q 007929 155 C 155 (584)
Q Consensus 155 ~ 155 (584)
.
T Consensus 126 ~ 126 (247)
T cd04143 126 D 126 (247)
T ss_pred h
Confidence 6
No 229
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.18 E-value=1.2e-10 Score=113.79 Aligned_cols=116 Identities=18% Similarity=0.155 Sum_probs=75.8
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|..|+|||||+++|+...-... . ...++.+.....+.+. ++
T Consensus 2 ~~KIvv---vG~~~vGKTsLi~~l~~~~~~~~--~--------------~~ti~~d~~~~~i~~~-------------~~ 49 (211)
T cd04111 2 QFRLIV---IGDSTVGKSSLLKRFTEGRFAEV--S--------------DPTVGVDFFSRLIEIE-------------PG 49 (211)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHcCCCCCC--C--------------CceeceEEEEEEEEEC-------------CC
Confidence 378999 99999999999999964321100 0 0011122111122221 12
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh----cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~----~~~p~ivviNK~D~~ 155 (584)
....+++|||||+..|.......++.+|++|+|+|.++.-......-|.. +.+ ...|++++.||+|+.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 50 VRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred CEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 35789999999999998888888999999999999987543333333322 221 234567899999986
No 230
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.18 E-value=1.5e-10 Score=109.71 Aligned_cols=113 Identities=23% Similarity=0.250 Sum_probs=83.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|..|||||||+++|.. +.... ..-|+......+.+.
T Consensus 12 ~~~~~ili---lGl~~sGKTtll~~l~~--~~~~~-----------------~~pT~g~~~~~i~~~------------- 56 (175)
T PF00025_consen 12 KKEIKILI---LGLDGSGKTTLLNRLKN--GEISE-----------------TIPTIGFNIEEIKYK------------- 56 (175)
T ss_dssp TSEEEEEE---EESTTSSHHHHHHHHHS--SSEEE-----------------EEEESSEEEEEEEET-------------
T ss_pred CcEEEEEE---ECCCccchHHHHHHhhh--ccccc-----------------cCcccccccceeeeC-------------
Confidence 57889999 99999999999999942 21111 012444444555566
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCc-hhHHHHHHHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTETVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~-~~t~~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
++.++++|.+|+..|.......+..+|++|+|||+.+.-. .+....+..+.. .++|+++++||+|+..
T Consensus 57 ---~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 57 ---GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD 129 (175)
T ss_dssp ---TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT
T ss_pred ---cEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC
Confidence 8999999999999888888888999999999999986432 334444444433 3678889999999974
No 231
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.18 E-value=8.9e-11 Score=112.77 Aligned_cols=113 Identities=15% Similarity=0.119 Sum_probs=79.2
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceE-EEEeecchhhhhcccccCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~-~~~~~~~~~~~~~~~~~~~ 86 (584)
.++|++ +|..|+|||||+.++++.. .... ...|+..... .+.. +
T Consensus 3 ~~ki~~---vG~~~vGKTsli~~~~~~~--f~~~----------------~~~t~~~~~~~~~~~--------------~ 47 (191)
T cd01875 3 SIKCVV---VGDGAVGKTCLLICYTTNA--FPKE----------------YIPTVFDNYSAQTAV--------------D 47 (191)
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHhCC--CCcC----------------CCCceEeeeEEEEEE--------------C
Confidence 578999 9999999999999996421 1100 0122221111 1111 1
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHH---hcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
++...++||||||+.+|.......++.+|++|+|+|.++....+... .|.... ..++|+++|.||.|+.
T Consensus 48 ~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 120 (191)
T cd01875 48 GRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR 120 (191)
T ss_pred CEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhh
Confidence 33688999999999999888888889999999999998876655553 353322 2468899999999986
No 232
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.17 E-value=8.6e-11 Score=110.78 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=74.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+.+++...- . ..... ...+.....+... +.
T Consensus 1 ~k~~i---~G~~~~GKtsl~~~~~~~~~-~-~~~~~---------------t~~~~~~~~~~~~--------------~~ 46 (173)
T cd04130 1 LKCVL---VGDGAVGKTSLIVSYTTNGY-P-TEYVP---------------TAFDNFSVVVLVD--------------GK 46 (173)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCC-C-CCCCC---------------ceeeeeeEEEEEC--------------CE
Confidence 47888 99999999999999865211 1 00000 0111111112222 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHH-HHHHh--cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l-~~~~~--~~~p~ivviNK~D~~ 155 (584)
...+.+|||||+.+|.......++.+|++|+|+|.++.-..+.. ..| ..+.. .++|+++++||+|+.
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 57789999999999887777788999999999999876544433 223 23322 368889999999986
No 233
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.17 E-value=1.3e-10 Score=114.04 Aligned_cols=112 Identities=15% Similarity=0.130 Sum_probs=78.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|..|+|||||+.++....- .. ++. -|+.... ..+... +
T Consensus 2 ~KIvv---vGd~~vGKTsLi~~~~~~~f--~~---------~y~-------pTi~~~~~~~~~~~--------------~ 46 (222)
T cd04173 2 CKIVV---VGDAECGKTALLQVFAKDAY--PG---------SYV-------PTVFENYTASFEID--------------K 46 (222)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHcCCC--CC---------ccC-------CccccceEEEEEEC--------------C
Confidence 68889 99999999999999964211 00 000 1221111 122222 3
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
....++||||+|+..|.......++.+|++|+|+|.++.-..+.. ..|..... .+.|+++|.||+|+.
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 367899999999999988888889999999999999887555444 34543222 467899999999986
No 234
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.16 E-value=3.3e-10 Score=120.14 Aligned_cols=112 Identities=19% Similarity=0.145 Sum_probs=74.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|+| +|.+|+|||||+++|....- +.... .+.|.......+.+. ..
T Consensus 161 dVal---VG~PNaGKSTLln~Lt~~k~-~vs~~---------------p~TT~~p~~Giv~~~---------------~~ 206 (390)
T PRK12298 161 DVGL---LGLPNAGKSTFIRAVSAAKP-KVADY---------------PFTTLVPNLGVVRVD---------------DE 206 (390)
T ss_pred cEEE---EcCCCCCHHHHHHHHhCCcc-cccCC---------------CCCccCcEEEEEEeC---------------CC
Confidence 6888 99999999999999964321 11111 134555555445444 13
Q ss_pred eeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCC---C-CchhHHHHHHHHHh-----cCCceEEEEecCc
Q 007929 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---G-VCVQTETVLRQALG-----ERIRPVLTVNKMD 153 (584)
Q Consensus 90 ~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~---g-~~~~t~~~l~~~~~-----~~~p~ivviNK~D 153 (584)
..|.|+||||..+ +...+.+.+..+|++++|||+.. . ...+...+++++.. .+.|.++|+||+|
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD 286 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID 286 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence 4699999999764 33456678899999999999872 1 11222333343333 2578999999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
+.
T Consensus 287 l~ 288 (390)
T PRK12298 287 LL 288 (390)
T ss_pred cC
Confidence 86
No 235
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.16 E-value=1.2e-10 Score=110.25 Aligned_cols=112 Identities=16% Similarity=0.136 Sum_probs=78.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceE-EEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~-~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|..++|||+|+.+++.. ..... ...|+..... .+.. ++
T Consensus 2 ~kivv---~G~~~vGKTsli~~~~~~--~f~~~----------------~~~Ti~~~~~~~~~~--------------~~ 46 (176)
T cd04133 2 IKCVT---VGDGAVGKTCMLICYTSN--KFPTD----------------YIPTVFDNFSANVSV--------------DG 46 (176)
T ss_pred eEEEE---ECCCCCcHHHHHHHHhcC--CCCCC----------------CCCcceeeeEEEEEE--------------CC
Confidence 57888 999999999999999642 11110 0112221110 1111 13
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHH---hcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
...+++||||+|+.+|.......++.+|++|+|+|.++--..+.. +.|.... ..++|+++|.||+|+.
T Consensus 47 ~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 47 NTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred EEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 368899999999999998888899999999999999877665554 3443322 2467889999999986
No 236
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.16 E-value=1.1e-10 Score=109.84 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=51.2
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHH---hcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
...+.+|||||+.+|.......++.+|++|+|+|.++.-..+.. ..|.... ..++|+++++||+|+.
T Consensus 45 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 45 PVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 56799999999999887777788999999999999875433332 2233322 2378999999999986
No 237
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.16 E-value=1.1e-10 Score=110.96 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=77.3
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++|++ +|..|+|||||+.+++...- .. ++ ..|+.... ..+... +
T Consensus 2 ~Kiv~---vG~~~vGKTsli~~~~~~~f--~~---------~~-------~~t~~~~~~~~~~~~--------------~ 46 (178)
T cd04131 2 CKIVV---VGDVQCGKTALLQVFAKDCY--PE---------TY-------VPTVFENYTASFEID--------------E 46 (178)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCcC--CC---------Cc-------CCceEEEEEEEEEEC--------------C
Confidence 68899 99999999999999964311 00 00 01221111 111222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHH---hcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
....+++|||||+..|.......++.+|++|+|+|.++..+.+.. ..|.... ..+.|+++|.||+|+.
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 47 QRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred EEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 367899999999999987777888999999999999877666552 4453322 2367888999999985
No 238
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.1e-10 Score=107.94 Aligned_cols=116 Identities=21% Similarity=0.200 Sum_probs=89.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|..++|||||+-++... . +.++ .--||..+..+..+.. .
T Consensus 4 ~~~KvvL---LG~~~VGKSSlV~Rfvk~--~----------F~e~------~e~TIGaaF~tktv~~------------~ 50 (200)
T KOG0092|consen 4 REFKVVL---LGDSGVGKSSLVLRFVKD--Q----------FHEN------IEPTIGAAFLTKTVTV------------D 50 (200)
T ss_pred ceEEEEE---ECCCCCCchhhhhhhhhC--c----------cccc------cccccccEEEEEEEEe------------C
Confidence 5689999 999999999999999421 1 1111 1146777777666652 2
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc--eE--EEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR--PV--LTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p--~i--vviNK~D~~ 155 (584)
+...++-||||+|+++|.+..--..|.|++||+|.|.++--..+..+-|-.-++...| ++ ++.||+|+.
T Consensus 51 ~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 51 DNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred CcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh
Confidence 3368899999999999999999999999999999999998888888888554554444 23 689999997
No 239
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.16 E-value=1.4e-10 Score=110.62 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=75.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce--EEEEeecchhhhhcccccCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~--~~~~~~~~~~~~~~~~~~~~ 86 (584)
++|++ +|..|+|||||+.+++...- .. ++ --|+.... ..+...
T Consensus 1 ~Ki~v---lG~~~vGKTsLi~~~~~~~f--~~---------~~-------~~T~g~~~~~~~i~~~-------------- 45 (182)
T cd04128 1 LKIGL---LGDAQIGKTSLMVKYVEGEF--DE---------DY-------IQTLGVNFMEKTISIR-------------- 45 (182)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCC--CC---------CC-------CCccceEEEEEEEEEC--------------
Confidence 47888 99999999999999964311 00 00 01222111 122222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh--cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG--ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~--~~~p~ivviNK~D~~ 155 (584)
+....+.+|||+|+..|.......++.+|++++|+|.++....+....|.. +.+ ...++++|+||+|+.
T Consensus 46 ~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~ 117 (182)
T cd04128 46 GTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLF 117 (182)
T ss_pred CEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 225789999999999998888888999999999999987655544434422 222 222347889999985
No 240
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.16 E-value=1.4e-10 Score=110.47 Aligned_cols=114 Identities=12% Similarity=0.119 Sum_probs=79.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~~ 85 (584)
..++|++ +|..|+|||||+.+++...- .. + ...|+.... ..+...
T Consensus 4 ~~~Kivv---vGd~~vGKTsli~~~~~~~f--~~---------~-------~~pT~~~~~~~~~~~~------------- 49 (182)
T cd04172 4 VKCKIVV---VGDSQCGKTALLHVFAKDCF--PE---------N-------YVPTVFENYTASFEID------------- 49 (182)
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHHhCCC--CC---------c-------cCCceeeeeEEEEEEC-------------
Confidence 4578999 99999999999999964311 00 0 011221111 111122
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
+....+.||||+|..+|.......++.+|++|+|+|.++....+.. ..|....+ .+.|+++|.||+|+.
T Consensus 50 -~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 50 -TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred -CEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 2357899999999999988888889999999999999887666554 45533222 367888999999985
No 241
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.15 E-value=2.7e-10 Score=118.42 Aligned_cols=112 Identities=24% Similarity=0.199 Sum_probs=75.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|++ +|.+|||||||+++|....-.+ .++ ...|+......+.+. .+
T Consensus 160 dVgl---VG~PNaGKSTLln~ls~a~~~v----------a~y------pfTT~~p~~G~v~~~---------------~~ 205 (335)
T PRK12299 160 DVGL---VGLPNAGKSTLISAVSAAKPKI----------ADY------PFTTLHPNLGVVRVD---------------DY 205 (335)
T ss_pred CEEE---EcCCCCCHHHHHHHHHcCCCcc----------CCC------CCceeCceEEEEEeC---------------CC
Confidence 6888 9999999999999995421111 111 124555555555553 15
Q ss_pred eeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH-h-----cCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G-----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~-~-----~~~p~ivviNK~D~~ 155 (584)
..|.++||||..+ +.....+.+..+|++|+|+|+++....+....|..-+ . .++|+++|+||+|+.
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 6799999999753 3345566777899999999998654344444443322 2 267899999999986
No 242
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.15 E-value=8.7e-10 Score=114.53 Aligned_cols=114 Identities=20% Similarity=0.162 Sum_probs=73.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
-.|++ +|.+|+|||||+++|....-.+ .++ ...|.......+.+. .
T Consensus 158 adV~l---vG~pnaGKSTLl~~lt~~~~~v----------a~y------~fTT~~p~ig~v~~~---------------~ 203 (329)
T TIGR02729 158 ADVGL---VGLPNAGKSTLISAVSAAKPKI----------ADY------PFTTLVPNLGVVRVD---------------D 203 (329)
T ss_pred ccEEE---EcCCCCCHHHHHHHHhcCCccc----------cCC------CCCccCCEEEEEEeC---------------C
Confidence 36788 9999999999999995321111 111 013444444444444 1
Q ss_pred ceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCCC---CchhHHHHHHH-HHh-----cCCceEEEEecC
Q 007929 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCVQTETVLRQ-ALG-----ERIRPVLTVNKM 152 (584)
Q Consensus 89 ~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~g---~~~~t~~~l~~-~~~-----~~~p~ivviNK~ 152 (584)
...+.|+||||..+ +.....+.+..||++|+|+|+... ...+....|.. +.. .+.|+++|+||+
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~ 283 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKI 283 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCc
Confidence 37899999999864 233445667789999999999864 22233333322 221 367899999999
Q ss_pred cccc
Q 007929 153 DRCF 156 (584)
Q Consensus 153 D~~~ 156 (584)
|+..
T Consensus 284 DL~~ 287 (329)
T TIGR02729 284 DLLD 287 (329)
T ss_pred cCCC
Confidence 9973
No 243
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.14 E-value=2.5e-10 Score=106.34 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=75.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+.+++.. ...... ...+..+.....+... +.
T Consensus 1 ~ki~v---vG~~~~GKTsli~~~~~~--~~~~~~--------------~~t~~~~~~~~~~~~~--------------~~ 47 (161)
T cd04117 1 FRLLL---IGDSGVGKTCLLCRFTDN--EFHSSH--------------ISTIGVDFKMKTIEVD--------------GI 47 (161)
T ss_pred CEEEE---ECcCCCCHHHHHHHHhcC--CCCCCC--------------CCceeeEEEEEEEEEC--------------CE
Confidence 46888 999999999999999532 111000 0011111111222222 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH----HhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~----~~~~~p~ivviNK~D~~ 155 (584)
...+.+|||||..+|........+.+|++++|+|..+.-..+...-|... ...+.|++++.||+|+.
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 46789999999999988888899999999999999875444443333221 12357888999999986
No 244
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.14 E-value=1.9e-10 Score=103.53 Aligned_cols=60 Identities=23% Similarity=0.210 Sum_probs=47.4
Q ss_pred EEeCCCC----CCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 93 NLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 93 nliDTPG----~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++||||| +..|....+.....||.+++|.|+++..+.-.-.. +...+.|+|-||||+|+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~f---a~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGF---ASMFNKPVIGVITKIDLP 102 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchh---hcccCCCEEEEEECccCc
Confidence 5699999 45677778888889999999999998755444422 233578999999999998
No 245
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=7.5e-12 Score=127.85 Aligned_cols=148 Identities=25% Similarity=0.314 Sum_probs=117.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCcccccc------------CC---CeeeeCChhhHhhhccceecceEEEE
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV------------AG---DVRMTDTRQDEAERGITIKSTGISLY 70 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~------------~g---~~~~~D~~~~E~~r~~Ti~~~~~~~~ 70 (584)
..+++|++ +||.++||||++. +.+|.++++. .| +.+.+|...-|++|+++|+.+...+.
T Consensus 5 ~~~~ni~~---i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~ 78 (391)
T KOG0052|consen 5 KIHINIVV---IGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 78 (391)
T ss_pred ccccceEE---EEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccc
Confidence 35689999 9999999999988 6677776652 12 46889999999999999877766655
Q ss_pred eecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCC
Q 007929 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (584)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-------~~~~t~~~l~~~~~~~~ 143 (584)
-. .+.+++||.|||.||...+..+.++||+++++|.+..| ...||+++...+...++
T Consensus 79 t~----------------k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv 142 (391)
T KOG0052|consen 79 TS----------------KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 142 (391)
T ss_pred ce----------------eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccc
Confidence 44 78899999999999999999999999999999988332 56789988888777776
Q ss_pred c-eEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHH
Q 007929 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM 181 (584)
Q Consensus 144 p-~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l 181 (584)
. +++.+||||... +.....++++++...+..+
T Consensus 143 ~qliv~v~k~D~~~------~~~s~~r~~ei~k~~~~~~ 175 (391)
T KOG0052|consen 143 KQLIVGVNKMDSTE------PPYSEARYEEIKKEVSSYI 175 (391)
T ss_pred eeeeEEeecccccC------CCccccchhhhheeeeeee
Confidence 5 568899999873 3344467777766655443
No 246
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.12 E-value=3.5e-10 Score=111.69 Aligned_cols=114 Identities=16% Similarity=0.124 Sum_probs=78.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~~ 85 (584)
..++|++ +|..|+|||+|+.+++... ..... ..|+.... ..+...
T Consensus 12 ~~~KIvv---vGd~~VGKTsLi~r~~~~~--F~~~y----------------~pTi~~~~~~~i~~~------------- 57 (232)
T cd04174 12 MRCKLVL---VGDVQCGKTAMLQVLAKDC--YPETY----------------VPTVFENYTAGLETE------------- 57 (232)
T ss_pred eeEEEEE---ECCCCCcHHHHHHHHhcCC--CCCCc----------------CCceeeeeEEEEEEC-------------
Confidence 3468888 9999999999999996421 11000 01221111 111111
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhH-HHHHHHHHh---cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t-~~~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
+....++||||+|..+|.......++.||++|+|+|.++....+. ...|..... .+.|+++|.||+|+.
T Consensus 58 -~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 58 -EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred -CEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 336889999999999998888888999999999999998766654 345533322 367888999999985
No 247
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.12 E-value=2.2e-10 Score=107.95 Aligned_cols=112 Identities=14% Similarity=0.080 Sum_probs=72.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc-eEEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.+|++ +|+.|+|||||+.+|+...-. .. + ..|+... ...+.+. +
T Consensus 2 ~ki~i---iG~~~~GKTsl~~~~~~~~~~--~~---------~-------~~t~~~~~~~~~~~~--------------~ 46 (175)
T cd01870 2 KKLVI---VGDGACGKTCLLIVFSKDQFP--EV---------Y-------VPTVFENYVADIEVD--------------G 46 (175)
T ss_pred cEEEE---ECCCCCCHHHHHHHHhcCCCC--CC---------C-------CCccccceEEEEEEC--------------C
Confidence 47888 999999999999999642210 00 0 0111111 1122222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
+...+.+|||||+.+|.......++.+|++++|+|..+-...... ..|..... .++|+++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcc
Confidence 256789999999998877666778899999999998754322222 22322222 478999999999986
No 248
>PLN00023 GTP-binding protein; Provisional
Probab=99.12 E-value=2.5e-10 Score=116.23 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=79.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc--eEEEEeecchhhhhccccc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--GISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~--~~~~~~~~~~~~~~~~~~~ 84 (584)
..++|++ +|..|+|||||+.+++...- ... ...|+... ...+.+.........+ ..
T Consensus 20 ~~iKIVL---LGdsGVGKTSLI~rf~~g~F--~~~----------------~~pTIG~d~~ik~I~~~~~~~~~~~i-k~ 77 (334)
T PLN00023 20 GQVRVLV---VGDSGVGKSSLVHLIVKGSS--IAR----------------PPQTIGCTVGVKHITYGSPGSSSNSI-KG 77 (334)
T ss_pred cceEEEE---ECCCCCcHHHHHHHHhcCCc--ccc----------------cCCceeeeEEEEEEEECCcccccccc-cc
Confidence 4579999 99999999999999953211 000 01122211 1122222000000000 00
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHhc---------------CCceEEE
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALGE---------------RIRPVLT 148 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~~---------------~~p~ivv 148 (584)
.....+.++||||+|+..|.......++.+|++|+|+|.+.-........|.. +... .+|++||
T Consensus 78 d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILV 157 (334)
T PLN00023 78 DSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVI 157 (334)
T ss_pred cCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEE
Confidence 01235789999999999999888889999999999999987554444444432 2221 3688899
Q ss_pred EecCccc
Q 007929 149 VNKMDRC 155 (584)
Q Consensus 149 iNK~D~~ 155 (584)
.||+|+.
T Consensus 158 GNK~DL~ 164 (334)
T PLN00023 158 GNKADIA 164 (334)
T ss_pred EECcccc
Confidence 9999986
No 249
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.12 E-value=3.4e-10 Score=110.81 Aligned_cols=117 Identities=16% Similarity=0.151 Sum_probs=81.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++++.. ..... ...|+........+. .
T Consensus 7 ~~~~kv~l---iG~~g~GKTtLi~~~~~~--~~~~~----------------~~~t~~~~~~~~~~~------------~ 53 (215)
T PTZ00132 7 VPEFKLIL---VGDGGVGKTTFVKRHLTG--EFEKK----------------YIPTLGVEVHPLKFY------------T 53 (215)
T ss_pred CCCceEEE---ECCCCCCHHHHHHHHHhC--CCCCC----------------CCCccceEEEEEEEE------------E
Confidence 35589999 999999999999887532 11110 012222222222221 0
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH---hcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
+.....+++|||||+.+|........+.+|++++|+|.++....+....|..-. ..++|+++++||+|+.
T Consensus 54 ~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 54 NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 123688999999999999777777788999999999999887766665553321 2467888999999986
No 250
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.10 E-value=7.9e-10 Score=108.17 Aligned_cols=158 Identities=22% Similarity=0.191 Sum_probs=108.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCcccc-ccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
...++|-| +|..|+|||||+|+|++....... -+.| + |.... .|.
T Consensus 37 ~~pvnvLi---~G~TG~GKSSliNALF~~~~~~v~~vg~~-t---~~~~~---------------~~~------------ 82 (296)
T COG3596 37 KEPVNVLL---MGATGAGKSSLINALFQGEVKEVSKVGVG-T---DITTR---------------LRL------------ 82 (296)
T ss_pred cCceeEEE---ecCCCCcHHHHHHHHHhccCceeeecccC-C---Cchhh---------------HHh------------
Confidence 46678888 999999999999999854443221 1222 0 11000 011
Q ss_pred CCCCceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCceEEEEecCccc
Q 007929 85 RQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~--~~p~ivviNK~D~~ 155 (584)
...+..++||||||..| +.......+...|.+++++++.+..-...+..|+..... +.+.+++||..|+.
T Consensus 83 -~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a 161 (296)
T COG3596 83 -SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRA 161 (296)
T ss_pred -hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhh
Confidence 01257899999999987 555677888899999999999998888888888887654 35788999999997
Q ss_pred cc--cc----cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceee
Q 007929 156 FL--EL----QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 212 (584)
Q Consensus 156 ~~--~~----~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 212 (584)
.. +| ..+...+.+.+++..+.+...++ ++.| |.++++..+|++
T Consensus 162 ~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q----------~V~p----V~~~~~r~~wgl 210 (296)
T COG3596 162 EPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ----------EVKP----VVAVSGRLPWGL 210 (296)
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHh----------hcCC----eEEeccccCccH
Confidence 42 11 22344555667777777666653 2344 777788888874
No 251
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.10 E-value=2.8e-10 Score=109.07 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=73.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceE-EEEeecchhhhhcccccCCCC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~-~~~~~~~~~~~~~~~~~~~~~ 88 (584)
+|++ +|..|+|||||+.+++...- ... + ..|+..... .+... +.
T Consensus 2 kivi---vG~~~vGKTsli~~~~~~~~--~~~---------~-------~~t~~~~~~~~i~~~--------------~~ 46 (189)
T cd04134 2 KVVV---LGDGACGKTSLLNVFTRGYF--PQV---------Y-------EPTVFENYVHDIFVD--------------GL 46 (189)
T ss_pred EEEE---ECCCCCCHHHHHHHHhcCCC--CCc---------c-------CCcceeeeEEEEEEC--------------CE
Confidence 6788 99999999999999964211 000 0 011111111 11111 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHH-HHHh--cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLR-QALG--ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~-~~~~--~~~p~ivviNK~D~~ 155 (584)
...++||||||+.+|.......++.+|++|+|+|..+-...+... .|. .+.. .+.|+++|.||+|+.
T Consensus 47 ~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~ 117 (189)
T cd04134 47 HIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLR 117 (189)
T ss_pred EEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 578999999999998776667788999999999988765555442 332 2222 367889999999996
No 252
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.10 E-value=8.9e-10 Score=110.23 Aligned_cols=114 Identities=24% Similarity=0.247 Sum_probs=75.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccce-ecceEEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI-KSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti-~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
....|.| +|++|+|||||+.++-...- +=...-+|. .....++.+.
T Consensus 167 ~~pTivV---aG~PNVGKSSlv~~lT~Akp-----------------EvA~YPFTTK~i~vGhfe~~------------- 213 (346)
T COG1084 167 DLPTIVV---AGYPNVGKSSLVRKLTTAKP-----------------EVAPYPFTTKGIHVGHFERG------------- 213 (346)
T ss_pred CCCeEEE---ecCCCCcHHHHHHHHhcCCC-----------------ccCCCCccccceeEeeeecC-------------
Confidence 4567778 99999999999999922111 111122333 3344556655
Q ss_pred CCCceeEEEeCCCCCCC--------chHHHHHHhhh-cCeEEEEEeCCC--CCchhHH-HHHHHHHh-cCCceEEEEecC
Q 007929 86 QGNEYLINLIDSPGHVD--------FSSEVTAALRI-TDGALVVVDCIE--GVCVQTE-TVLRQALG-ERIRPVLTVNKM 152 (584)
Q Consensus 86 ~~~~~~inliDTPG~~d--------f~~e~~~~l~~-~D~ailvvda~~--g~~~~t~-~~l~~~~~-~~~p~ivviNK~ 152 (584)
..+|.+|||||.-| ...+++.||+. .+.+++++|+++ |...... .+|+.... ...|+++|+||+
T Consensus 214 ---~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~ 290 (346)
T COG1084 214 ---YLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKI 290 (346)
T ss_pred ---CceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 67999999999765 33456778875 457789999986 4433333 34455433 346788999999
Q ss_pred cccc
Q 007929 153 DRCF 156 (584)
Q Consensus 153 D~~~ 156 (584)
|...
T Consensus 291 D~~~ 294 (346)
T COG1084 291 DIAD 294 (346)
T ss_pred cccc
Confidence 9874
No 253
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.09 E-value=7.6e-10 Score=101.37 Aligned_cols=123 Identities=22% Similarity=0.173 Sum_probs=91.3
Q ss_pred CCccc-cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhh
Q 007929 1 MSSYC-FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (584)
Q Consensus 1 ~~~~~-~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~ 79 (584)
|++.. .+-++|.| +|.+|+|||+|.+++.+. .-.+....||..-..+-+...
T Consensus 1 M~~~~K~~lLKVii---LGDsGVGKtSLmn~yv~~------------------kF~~qykaTIgadFltKev~V------ 53 (210)
T KOG0394|consen 1 MSSLRKRTLLKVII---LGDSGVGKTSLMNQYVNK------------------KFSQQYKATIGADFLTKEVQV------ 53 (210)
T ss_pred CCCcCcccceEEEE---eCCCCccHHHHHHHHHHH------------------HHHHHhccccchhheeeEEEE------
Confidence 67744 56679999 999999999999999543 112334456665555444431
Q ss_pred cccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-----HHh---cCCceEEEEec
Q 007929 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-----ALG---ERIRPVLTVNK 151 (584)
Q Consensus 80 ~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-----~~~---~~~p~ivviNK 151 (584)
+++...+.||||+|+++|-+.-..-.|-||+|++|.|....-......-|+. +.. ..-|.||+.||
T Consensus 54 ------d~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNK 127 (210)
T KOG0394|consen 54 ------DDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNK 127 (210)
T ss_pred ------cCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEccc
Confidence 2446789999999999998887778899999999999987766676666643 211 24588999999
Q ss_pred Ccccc
Q 007929 152 MDRCF 156 (584)
Q Consensus 152 ~D~~~ 156 (584)
+|...
T Consensus 128 iD~~~ 132 (210)
T KOG0394|consen 128 IDVDG 132 (210)
T ss_pred ccCCC
Confidence 99985
No 254
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.09 E-value=5.1e-10 Score=110.12 Aligned_cols=111 Identities=19% Similarity=0.186 Sum_probs=70.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccce--ecceEEEEeecchhhhhcccccCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI--KSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti--~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
++|++ +|..|+|||||+++++. +..... .+ ..|+ +....++.+.
T Consensus 1 ~KI~l---vG~~gvGKTsLi~~~~~--~~~~~~--------~~-------~~t~~~~~~~~~i~~~-------------- 46 (221)
T cd04148 1 YRVVM---LGSPGVGKSSLASQFTS--GEYDDH--------AY-------DASGDDDTYERTVSVD-------------- 46 (221)
T ss_pred CEEEE---ECCCCCcHHHHHHHHhc--CCcCcc--------Cc-------CCCccccceEEEEEEC--------------
Confidence 47888 99999999999999953 211100 00 0111 1111122222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhh-hcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALR-ITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~-~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~ 155 (584)
+....+++|||||+.++.. ...++ .+|++++|+|+++.-.......| ..+.+ .++|+++|+||+|+.
T Consensus 47 ~~~~~l~i~Dt~G~~~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 47 GEESTLVVIDHWEQEMWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred CEEEEEEEEeCCCcchHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 1267899999999984332 23456 89999999999986544433333 22222 368899999999986
No 255
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.08 E-value=2.4e-09 Score=99.25 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=71.5
Q ss_pred EEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCce
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (584)
|++ +|+.|+|||||++.|....... . ..+ ..+.|.... .+.+. .
T Consensus 2 i~l---~G~~g~GKTtL~~~l~~~~~~~-~-~~~------------~~~~t~~~~--~~~~~-----------------~ 45 (170)
T cd01876 2 IAF---AGRSNVGKSSLINALTNRKKLA-R-TSK------------TPGKTQLIN--FFNVN-----------------D 45 (170)
T ss_pred EEE---EcCCCCCHHHHHHHHhcCCcee-e-ecC------------CCCcceeEE--EEEcc-----------------C
Confidence 566 9999999999999996322110 0 011 112222211 12222 3
Q ss_pred eEEEeCCCCCCCc----------hHHHHHHh---hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 91 LINLIDSPGHVDF----------SSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 91 ~inliDTPG~~df----------~~e~~~~l---~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
.+.+|||||+.+. ...+...+ ..++++++++|...........+++.+...+.|+++++||+|+.
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 7899999998653 22222223 34678999999988877777777777777788999999999986
No 256
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.8e-09 Score=101.65 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=90.8
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
....++|.+ +|.+|+|||+++.++...+-..+... -+-|+...-++...
T Consensus 9 ~d~~~kvll---iGDs~vGKt~~l~rf~d~~f~~~~~s----------------TiGIDFk~kti~l~------------ 57 (207)
T KOG0078|consen 9 YDYLFKLLL---IGDSGVGKTCLLLRFSDDSFNTSFIS----------------TIGIDFKIKTIELD------------ 57 (207)
T ss_pred cceEEEEEE---ECCCCCchhHhhhhhhhccCcCCccc----------------eEEEEEEEEEEEeC------------
Confidence 457789999 99999999999999953322111000 02233333333333
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCceEEEEecCcccccccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRCFLELQ 160 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~----~~~~p~ivviNK~D~~~~~~~ 160 (584)
+...++.+|||.|++.|...+.++.+.|+++++|+|.+...+.....-|.... ..++|.++|.||+|+.. +.+
T Consensus 58 --g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-~R~ 134 (207)
T KOG0078|consen 58 --GKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-KRQ 134 (207)
T ss_pred --CeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-ccc
Confidence 34678899999999999999999999999999999999887777776675543 34788999999999984 334
Q ss_pred CCH
Q 007929 161 VDG 163 (584)
Q Consensus 161 ~~~ 163 (584)
.+.
T Consensus 135 V~~ 137 (207)
T KOG0078|consen 135 VSK 137 (207)
T ss_pred ccH
Confidence 444
No 257
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.07 E-value=5.9e-10 Score=109.89 Aligned_cols=117 Identities=22% Similarity=0.208 Sum_probs=81.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+...|++ +|.+|+|||||+|.|+...-....+.. ..|.......+.-.
T Consensus 70 ~k~L~vav---IG~PNvGKStLtN~mig~kv~~vS~K~---------------~TTr~~ilgi~ts~------------- 118 (379)
T KOG1423|consen 70 QKSLYVAV---IGAPNVGKSTLTNQMIGQKVSAVSRKV---------------HTTRHRILGIITSG------------- 118 (379)
T ss_pred ceEEEEEE---EcCCCcchhhhhhHhhCCccccccccc---------------cceeeeeeEEEecC-------------
Confidence 46789999 999999999999999765433222211 12222222223222
Q ss_pred CCCceeEEEeCCCCCC------------CchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh-cCCceEEEEecC
Q 007929 86 QGNEYLINLIDSPGHV------------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-ERIRPVLTVNKM 152 (584)
Q Consensus 86 ~~~~~~inliDTPG~~------------df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~-~~~p~ivviNK~ 152 (584)
...+.|.||||.. .|......|+..||.+++|+|+.+.-..-.-++++.+.+ ..+|-++|.||+
T Consensus 119 ---eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnki 195 (379)
T KOG1423|consen 119 ---ETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKI 195 (379)
T ss_pred ---ceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccch
Confidence 7899999999954 255567889999999999999997433333445555444 378899999999
Q ss_pred cccc
Q 007929 153 DRCF 156 (584)
Q Consensus 153 D~~~ 156 (584)
|...
T Consensus 196 d~~k 199 (379)
T KOG1423|consen 196 DKLK 199 (379)
T ss_pred hcch
Confidence 9874
No 258
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.06 E-value=3.9e-10 Score=125.87 Aligned_cols=104 Identities=24% Similarity=0.234 Sum_probs=75.0
Q ss_pred cCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCceeEEEeCC
Q 007929 18 NSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDS 97 (584)
Q Consensus 18 G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDT 97 (584)
|.+|+|||||+++|.+..- + + ....|+|++.....+.++ ++.++++||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~---~-------v------~n~pG~Tv~~~~~~i~~~----------------~~~i~lvDt 48 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ---T-------V------GNWPGVTVEKKEGKLGFQ----------------GEDIEIVDL 48 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC---e-------e------cCCCCeEEEEEEEEEEEC----------------CeEEEEEEC
Confidence 7899999999999953211 0 1 112467887776677766 678999999
Q ss_pred CCCCCchHH-----HHH-H--hhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 98 PGHVDFSSE-----VTA-A--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 98 PG~~df~~e-----~~~-~--l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
||+.+|... +.+ . ...+|++++|+|++..- .......++.+.++|+++++||+|+.
T Consensus 49 PG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 49 PGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred CCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 999887643 222 2 23689999999998732 23344455567899999999999986
No 259
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.06 E-value=1.3e-09 Score=101.17 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=80.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|..++|||||+.+|.... .... +.+ .+..+.....+... +..
T Consensus 1 Ki~v---vG~~~vGKtsl~~~~~~~~--~~~~---------~~~-----t~~~~~~~~~~~~~--------------~~~ 47 (162)
T PF00071_consen 1 KIVV---VGDSGVGKTSLINRLINGE--FPEN---------YIP-----TIGIDSYSKEVSID--------------GKP 47 (162)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHSS--TTSS---------SET-----TSSEEEEEEEEEET--------------TEE
T ss_pred CEEE---ECCCCCCHHHHHHHHHhhc--cccc---------ccc-----cccccccccccccc--------------ccc
Confidence 6888 9999999999999996431 1110 000 01122222222222 336
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh---c-CCceEEEEecCccccccccCCH
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---E-RIRPVLTVNKMDRCFLELQVDG 163 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~---~-~~p~ivviNK~D~~~~~~~~~~ 163 (584)
+.+.+|||+|+.+|.......++.+|++|+|+|..+.-.......|..... . ..|++++.||.|+.. +...+.
T Consensus 48 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~ 124 (162)
T PF00071_consen 48 VNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSV 124 (162)
T ss_dssp EEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc-cccchh
Confidence 889999999999998877888999999999999987655555555544322 2 467789999999874 334444
No 260
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.05 E-value=1.9e-09 Score=116.44 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=73.3
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
..|++ +|.+|+|||||+++|....-. +.|+ .+.|+......+.+.
T Consensus 160 adV~L---VG~PNAGKSTLln~Ls~akpk----------Iady------pfTTl~P~lGvv~~~---------------- 204 (500)
T PRK12296 160 ADVGL---VGFPSAGKSSLISALSAAKPK----------IADY------PFTTLVPNLGVVQAG---------------- 204 (500)
T ss_pred ceEEE---EEcCCCCHHHHHHHHhcCCcc----------cccc------CcccccceEEEEEEC----------------
Confidence 47888 999999999999999542111 1111 235666555556665
Q ss_pred ceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCC---CCch-hHHHHH-HHH---H-----------hcC
Q 007929 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---GVCV-QTETVL-RQA---L-----------GER 142 (584)
Q Consensus 89 ~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~---g~~~-~t~~~l-~~~---~-----------~~~ 142 (584)
+..|.|+||||..+ ...+..+.+..||++|+|||++. +..+ .....| ..+ . ..+
T Consensus 205 ~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 67899999999753 12234556778999999999974 1111 111222 111 1 136
Q ss_pred CceEEEEecCccc
Q 007929 143 IRPVLTVNKMDRC 155 (584)
Q Consensus 143 ~p~ivviNK~D~~ 155 (584)
.|.++|+||+|++
T Consensus 285 kP~IVVlNKiDL~ 297 (500)
T PRK12296 285 RPRLVVLNKIDVP 297 (500)
T ss_pred CCEEEEEECccch
Confidence 7999999999986
No 261
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.04 E-value=1.7e-09 Score=104.37 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=69.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|.+|+|||||+++|+..... ..|. ...+. ...|.... . +. ...
T Consensus 2 ~kI~i---~G~~g~GKSSLin~L~g~~~~----~~~~-~~~~~------~~~t~~~~--~--~~-------------~~~ 50 (197)
T cd04104 2 LNIAV---TGESGAGKSSFINALRGVGHE----EEGA-APTGV------VETTMKRT--P--YP-------------HPK 50 (197)
T ss_pred eEEEE---ECCCCCCHHHHHHHHhccCCC----CCCc-cccCc------cccccCce--e--ee-------------cCC
Confidence 57888 999999999999999753211 0110 00000 00111111 1 11 011
Q ss_pred ceeEEEeCCCCCCCchHHHHH-----HhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTA-----ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~-----~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
...+.+|||||..+....... .+..+|.+++|.| ..........++.+.+.+.|+++|+||+|+..
T Consensus 51 ~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 51 FPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 346899999998654322222 2456788777754 35566666677777777889999999999963
No 262
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=9.2e-10 Score=115.06 Aligned_cols=112 Identities=22% Similarity=0.241 Sum_probs=88.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
.-+.|+| +|++|+|||||+|+|......|..+.+| .|.++-.+.+..+
T Consensus 267 ~gl~iaI---vGrPNvGKSSLlNaL~~~drsIVSpv~G---------------TTRDaiea~v~~~-------------- 314 (531)
T KOG1191|consen 267 SGLQIAI---VGRPNVGKSSLLNALSREDRSIVSPVPG---------------TTRDAIEAQVTVN-------------- 314 (531)
T ss_pred cCCeEEE---EcCCCCCHHHHHHHHhcCCceEeCCCCC---------------cchhhheeEeecC--------------
Confidence 4578999 9999999999999999998888888777 5777777777777
Q ss_pred CCceeEEEeCCCCCCCc---------hHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecC
Q 007929 87 GNEYLINLIDSPGHVDF---------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (584)
Q Consensus 87 ~~~~~inliDTPG~~df---------~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~ 152 (584)
++++.|+||+|..+= +.....++..||.+++||||.++...+...+.+.+...+..+.+.+|||
T Consensus 315 --G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 315 --GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred --CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence 899999999998761 1224567889999999999999888887777776655544433333433
No 263
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.03 E-value=3.1e-09 Score=113.45 Aligned_cols=112 Identities=18% Similarity=0.125 Sum_probs=71.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|++ +|.+|+|||||+++|....-.+ .++ ...|+......+.+. .+
T Consensus 160 dVgl---VG~pNaGKSTLLn~Lt~ak~kI----------a~y------pfTTl~PnlG~v~~~---------------~~ 205 (424)
T PRK12297 160 DVGL---VGFPNVGKSTLLSVVSNAKPKI----------ANY------HFTTLVPNLGVVETD---------------DG 205 (424)
T ss_pred cEEE---EcCCCCCHHHHHHHHHcCCCcc----------ccC------CcceeceEEEEEEEe---------------CC
Confidence 6788 9999999999999995432111 111 123444443334433 14
Q ss_pred eeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCCC---CchhHHHHH-HHHHh-----cCCceEEEEecCc
Q 007929 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCVQTETVL-RQALG-----ERIRPVLTVNKMD 153 (584)
Q Consensus 90 ~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~g---~~~~t~~~l-~~~~~-----~~~p~ivviNK~D 153 (584)
..|.++||||..+ +..+..+.+..+|++|+|||++.. ........| ..+.. .++|.++|+||+|
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~D 285 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMD 285 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCC
Confidence 6899999999854 223445566779999999999753 122222333 22222 3678999999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
+.
T Consensus 286 L~ 287 (424)
T PRK12297 286 LP 287 (424)
T ss_pred Cc
Confidence 74
No 264
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=4.1e-09 Score=92.87 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=83.2
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc--eEEEEeecchhhhhcccccC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--GISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~--~~~~~~~~~~~~~~~~~~~~ 85 (584)
-++|++ +|..|+|||.|++++ ..|... ++-| -||... .-+++.+
T Consensus 7 lfkivl---vgnagvgktclvrrf--tqglfp-pgqg---------------atigvdfmiktvev~------------- 52 (213)
T KOG0095|consen 7 LFKIVL---VGNAGVGKTCLVRRF--TQGLFP-PGQG---------------ATIGVDFMIKTVEVN------------- 52 (213)
T ss_pred eEEEEE---EccCCcCcchhhhhh--hccCCC-CCCC---------------ceeeeeEEEEEEEEC-------------
Confidence 478888 999999999999999 334332 2222 223222 2223333
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHH---HhcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~---~~~~~p~ivviNK~D~~~ 156 (584)
+...++.||||+|+++|.+-+.+..|.|.+.|+|.|.+.-.......-| +.+ ....+--|+|.||+|+..
T Consensus 53 -gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 53 -GEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred -CeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 3367899999999999999999999999999999999988777777666 222 233445679999999973
No 265
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=9.8e-10 Score=100.81 Aligned_cols=117 Identities=21% Similarity=0.148 Sum_probs=80.6
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..+++.| +|..|+|||.|+-++..+.- ..+.+ .-+.++.....+.. +
T Consensus 5 ~~fKyIi---iGd~gVGKSclllrf~~krF-----------~~~hd-----~TiGvefg~r~~~i--------------d 51 (216)
T KOG0098|consen 5 YLFKYII---IGDTGVGKSCLLLRFTDKRF-----------QPVHD-----LTIGVEFGARMVTI--------------D 51 (216)
T ss_pred ceEEEEE---ECCCCccHHHHHHHHhccCc-----------ccccc-----ceeeeeeceeEEEE--------------c
Confidence 4578888 99999999999999842211 11111 00222222222222 2
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH----HHHHhcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l----~~~~~~~~p~ivviNK~D~~~ 156 (584)
++..++++|||.||+.|..-+.+..+.+-|||||.|.+.-........| ++....+..++++.||+|+..
T Consensus 52 ~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 52 GKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA 125 (216)
T ss_pred CceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc
Confidence 4478899999999999999999999999999999999876555555555 222234556678999999983
No 266
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=3.6e-09 Score=97.96 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=86.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|..++|||||+.++.|..--- ..+-||.....+..+. ..
T Consensus 21 k~~KlVf---lGdqsVGKTslItRf~yd~fd~------------------~YqATIGiDFlskt~~------------l~ 67 (221)
T KOG0094|consen 21 KKYKLVF---LGDQSVGKTSLITRFMYDKFDN------------------TYQATIGIDFLSKTMY------------LE 67 (221)
T ss_pred eEEEEEE---EccCccchHHHHHHHHHhhhcc------------------cccceeeeEEEEEEEE------------Ec
Confidence 5589999 9999999999999998754311 1223554444443332 12
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHhcC----CceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGER----IRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~~~----~p~ivviNK~D~~~ 156 (584)
+..+++.+|||+|+++|...+-.++|.++.||+|.|.++--..+....| ..+.+++ +-+++|.||-|+..
T Consensus 68 d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 68 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred CcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 4578999999999999999999999999999999999887666555555 4444432 33458899999984
No 267
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.5e-09 Score=95.95 Aligned_cols=122 Identities=21% Similarity=0.150 Sum_probs=85.4
Q ss_pred CCccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhc
Q 007929 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (584)
Q Consensus 1 ~~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~ 80 (584)
||...+--+++.+ +|+.|+|||.|+.+++...-.-+..+ .-|+-..+..+.+.
T Consensus 2 msEtYDyLfKfl~---iG~aGtGKSCLLh~Fie~kfkDdssH--------------TiGveFgSrIinVG---------- 54 (214)
T KOG0086|consen 2 MSETYDYLFKFLV---IGSAGTGKSCLLHQFIENKFKDDSSH--------------TIGVEFGSRIVNVG---------- 54 (214)
T ss_pred cchhhhhhheeEE---eccCCCChhHHHHHHHHhhhcccccc--------------eeeeeecceeeeec----------
Confidence 3444566688888 99999999999999975422111100 01122222233332
Q ss_pred ccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH----HHHhcCCceEEEEecCccc
Q 007929 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~----~~~~~~~p~ivviNK~D~~ 155 (584)
++..++.||||+|++.|..-+....|.|-||++|.|++.........-|- .+...++-++++.||-|+.
T Consensus 55 ------gK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 55 ------GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD 127 (214)
T ss_pred ------CcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence 34789999999999999999999999999999999999877766666662 2223344556889999997
No 268
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.99 E-value=1.1e-08 Score=102.08 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=79.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|++|+|||||+|+|+........... +.|.........+.
T Consensus 29 ~~~~~Ill---vG~tGvGKSSliNaLlg~~~~~v~~~~---------------~~T~~~~~~~~~~~------------- 77 (249)
T cd01853 29 DFSLTILV---LGKTGVGKSSTINSIFGERKAATSAFQ---------------SETLRVREVSGTVD------------- 77 (249)
T ss_pred cCCeEEEE---ECCCCCcHHHHHHHHhCCCCcccCCCC---------------CceEEEEEEEEEEC-------------
Confidence 35679999 999999999999999865432221111 12333333344455
Q ss_pred CCCceeEEEeCCCCCCCchH------H----HHHHhh--hcCeEEEEEeCCC-CCchhHHHHHHHHHh-cC----CceEE
Q 007929 86 QGNEYLINLIDSPGHVDFSS------E----VTAALR--ITDGALVVVDCIE-GVCVQTETVLRQALG-ER----IRPVL 147 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~------e----~~~~l~--~~D~ailvvda~~-g~~~~t~~~l~~~~~-~~----~p~iv 147 (584)
+..+++|||||..+... + +.+.+. ..|.+++|..... ........+++.+.. .+ .++++
T Consensus 78 ---g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~iv 154 (249)
T cd01853 78 ---GFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIV 154 (249)
T ss_pred ---CeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEE
Confidence 78899999999987631 1 112222 4577777654432 233444455544332 12 46789
Q ss_pred EEecCccccccccCCHHHHHHHHHHHHHHHH
Q 007929 148 TVNKMDRCFLELQVDGEEAYQTFQKVIENAN 178 (584)
Q Consensus 148 viNK~D~~~~~~~~~~~~~~~~~~~~l~~v~ 178 (584)
|+||+|....+-.......+.++......++
T Consensus 155 V~T~~d~~~p~~~~~~~~~~~~~~~~~~~i~ 185 (249)
T cd01853 155 VLTHAASSPPDGLNGTPFSYDRFVAQRSHIV 185 (249)
T ss_pred EEeCCccCCCCCCCCCcchHHHHHHHHHHHH
Confidence 9999999743322222233444444334333
No 269
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.95 E-value=1e-08 Score=92.22 Aligned_cols=113 Identities=20% Similarity=0.223 Sum_probs=85.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.+.|-| +|..||||||++..|+...- ..-. -|......++.++
T Consensus 14 erE~riLi---LGLdNsGKTti~~kl~~~~~---~~i~----------------pt~gf~Iktl~~~------------- 58 (185)
T KOG0073|consen 14 EREVRILI---LGLDNSGKTTIVKKLLGEDT---DTIS----------------PTLGFQIKTLEYK------------- 58 (185)
T ss_pred hheeEEEE---EecCCCCchhHHHHhcCCCc---cccC----------------CccceeeEEEEec-------------
Confidence 46788999 99999999999999964321 0000 2334444556666
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCch-hHHHHHHHHH----hcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~-~t~~~l~~~~----~~~~p~ivviNK~D~~~ 156 (584)
++.+|++|.-|+..+......+...+|+.|.|||..+.... ++...++.++ -.+.|++++.||.|...
T Consensus 59 ---~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 59 ---GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred ---ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 89999999999999999999999999999999999876433 3444444443 23679999999999984
No 270
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.93 E-value=4.1e-09 Score=103.11 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=77.8
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|..|+|||||+++|....-.. + ...|+.......... ...
T Consensus 5 ~~kivv---~G~~g~GKTtl~~~l~~~~~~~----------------~--~~~t~~~~~~~~~~~------------~~~ 51 (219)
T COG1100 5 EFKIVV---LGDGGVGKTTLLNRLVGDEFPE----------------G--YPPTIGNLDPAKTIE------------PYR 51 (219)
T ss_pred eEEEEE---EcCCCccHHHHHHHHhcCcCcc----------------c--CCCceeeeeEEEEEE------------eCC
Confidence 378999 9999999999999995432110 0 012222222222211 011
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-CchhHHHHHH-HHHh---cCCceEEEEecCcccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLR-QALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-~~~~t~~~l~-~~~~---~~~p~ivviNK~D~~~ 156 (584)
...++.+|||+|+.+|..-+....+.++++++|+|.... ......+.|. .+.. .+.|++++.||+|+..
T Consensus 52 ~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 52 RNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred CEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 146799999999999998888999999999999999862 2223334444 3333 2588999999999984
No 271
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.93 E-value=6e-09 Score=100.40 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=49.6
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
+....++||||+|..+. .....++.+|++|+|+|.++....+... .|....+ .+.|+++|.||+|+.
T Consensus 63 ~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 63 GVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred CEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 34688999999999763 2344678999999999998776555443 4533222 367889999999986
No 272
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.92 E-value=8.9e-09 Score=102.05 Aligned_cols=82 Identities=28% Similarity=0.298 Sum_probs=56.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|.+|+|||||+++|......+ + + ..+.|.......+.+. +
T Consensus 2 ~v~l---vG~~~~GKStLl~~Ltg~~~~v-----~-----~------~~~tT~~~~~g~~~~~----------------~ 46 (233)
T cd01896 2 RVAL---VGFPSVGKSTLLSKLTNTKSEV-----A-----A------YEFTTLTCVPGVLEYK----------------G 46 (233)
T ss_pred EEEE---ECCCCCCHHHHHHHHHCCCccc-----c-----C------CCCccccceEEEEEEC----------------C
Confidence 5677 9999999999999995332110 0 0 0123434434445555 7
Q ss_pred eeEEEeCCCCCCCc-------hHHHHHHhhhcCeEEEEEeCCCC
Q 007929 90 YLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEG 126 (584)
Q Consensus 90 ~~inliDTPG~~df-------~~e~~~~l~~~D~ailvvda~~g 126 (584)
..+++|||||+.+. ..++...++.+|++++|+|+.+.
T Consensus 47 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 47 AKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred eEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 88999999998643 34567788999999999998754
No 273
>PRK09866 hypothetical protein; Provisional
Probab=98.91 E-value=1.4e-08 Score=110.61 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=55.9
Q ss_pred ceeEEEeCCCCCCC-----chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcC--CceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVD-----FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER--IRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~d-----f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~--~p~ivviNK~D~~ 155 (584)
...+.|+||||... +...+..++..+|.+++|||+..+.....+.+++.+.+.+ .|+++++||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 46789999999643 4456778999999999999999988888888887776666 4899999999985
No 274
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.89 E-value=2.8e-08 Score=97.66 Aligned_cols=134 Identities=14% Similarity=0.147 Sum_probs=81.1
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|.+ +|+.+|||||....+......-. -..-|.|++....++.+.+ .
T Consensus 1 KiLL---mG~~~SGKTSi~~vIF~~~~p~d---------------T~~L~~T~~ve~~~v~~~~---------------~ 47 (232)
T PF04670_consen 1 KILL---MGPRRSGKTSIRSVIFHKYSPRD---------------TLRLEPTIDVEKSHVRFLS---------------F 47 (232)
T ss_dssp EEEE---EESTTSSHHHHHHHHHS---GGG---------------GGG-----SEEEEEEECTT---------------S
T ss_pred CEEE---EcCCCCChhhHHHHHHcCCCchh---------------ccccCCcCCceEEEEecCC---------------C
Confidence 4667 99999999999999854322111 1112456665555554441 5
Q ss_pred eeEEEeCCCCCCCchHH-----HHHHhhhcCeEEEEEeCCCCCchhHHHH----HHHHHh--cCCceEEEEecCcccccc
Q 007929 90 YLINLIDSPGHVDFSSE-----VTAALRITDGALVVVDCIEGVCVQTETV----LRQALG--ERIRPVLTVNKMDRCFLE 158 (584)
Q Consensus 90 ~~inliDTPG~~df~~e-----~~~~l~~~D~ailvvda~~g~~~~t~~~----l~~~~~--~~~p~ivviNK~D~~~~~ 158 (584)
..+++||+||+.+|... ....++.+++.|+|+|+........... +..+.+ .++.+.+++.|||...
T Consensus 48 ~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~-- 125 (232)
T PF04670_consen 48 LPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS-- 125 (232)
T ss_dssp CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS---
T ss_pred cEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC--
Confidence 68999999999988765 4667899999999999984332222222 233333 3566779999999874
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHh
Q 007929 159 LQVDGEEAYQTFQKVIENANVIMA 182 (584)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~v~~~l~ 182 (584)
.+.-...++.+.+.+...+.
T Consensus 126 ----~~~r~~~~~~~~~~i~~~~~ 145 (232)
T PF04670_consen 126 ----EDEREEIFRDIQQRIRDELE 145 (232)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHhh
Confidence 44444456666666666553
No 275
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.89 E-value=6.8e-09 Score=96.56 Aligned_cols=107 Identities=17% Similarity=0.133 Sum_probs=69.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|..|+|||||+.+++... ... +..+ +......++.+. +.
T Consensus 1 ~ki~v---vG~~gvGKTsli~~~~~~~--f~~---------~~~~-------~~~~~~~~i~~~--------------~~ 45 (158)
T cd04103 1 LKLGI---VGNLQSGKSALVHRYLTGS--YVQ---------LESP-------EGGRFKKEVLVD--------------GQ 45 (158)
T ss_pred CEEEE---ECCCCCcHHHHHHHHHhCC--CCC---------CCCC-------CccceEEEEEEC--------------CE
Confidence 47888 9999999999999986421 100 0001 000001122222 22
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~ 155 (584)
...+.+|||+|..+. ...+.+|++++|+|.++-...+....| ..+.. .++|++++.||+|+.
T Consensus 46 ~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 46 SHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 577999999999752 345789999999999987776664334 33322 356888999999974
No 276
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.88 E-value=5.7e-09 Score=92.02 Aligned_cols=113 Identities=21% Similarity=0.159 Sum_probs=78.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
....+.+ +|-.+||||||++... .| ++.++ -+-|+...+..+.-.
T Consensus 19 ~emel~l---vGLq~sGKtt~Vn~ia--~g-------------~~~ed---miptvGfnmrk~tkg-------------- 63 (186)
T KOG0075|consen 19 EEMELSL---VGLQNSGKTTLVNVIA--RG-------------QYLED---MIPTVGFNMRKVTKG-------------- 63 (186)
T ss_pred heeeEEE---EeeccCCcceEEEEEe--ec-------------cchhh---hcccccceeEEeccC--------------
Confidence 4456677 9999999999998872 11 11100 012333333333222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-CchhHHHHHHHHHh----cCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-~~~~t~~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
...+.++|.||++.|.....+..|.+|++++||||.+. --...+.-+..++. .++|+++..||.|+++
T Consensus 64 --nvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 64 --NVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred --ceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc
Confidence 68899999999999999999999999999999999873 22233333444332 4789999999999985
No 277
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.88 E-value=1e-08 Score=97.96 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=71.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.+|++ +|..|+|||||+++|... ..... . ..|+.... ..+.+. +
T Consensus 2 ~Ki~i---vG~~g~GKStLl~~l~~~--~~~~~--------------~--~~t~~~~~~~~~~~~--------------~ 46 (187)
T cd04129 2 RKLVI---VGDGACGKTSLLSVFTLG--EFPEE--------------Y--HPTVFENYVTDCRVD--------------G 46 (187)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhC--CCCcc--------------c--CCcccceEEEEEEEC--------------C
Confidence 47888 999999999999999532 11100 0 01111111 111222 1
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHH---hcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
....++++||||+.+|.......++.+|++++++|....-..+... .|.... ...+|++++.||+|+.
T Consensus 47 ~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 47 KPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred EEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 2466899999999887655455678999999999987654433332 243322 2368899999999985
No 278
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.86 E-value=2.1e-08 Score=99.06 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=53.0
Q ss_pred ceeEEEeCCCCCCCc-------------hHHHHHHhh-hcCeEEEEEeCCCCCchhH-HHHHHHHHhcCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVDF-------------SSEVTAALR-ITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~df-------------~~e~~~~l~-~~D~ailvvda~~g~~~~t-~~~l~~~~~~~~p~ivviNK~D 153 (584)
...++||||||.... ...+..+++ ..+.+++|+|+..++..+. .++.+.+...+.+.++|+||+|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 467999999998632 123556777 4568999999999988877 4777777778899999999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
..
T Consensus 204 ~~ 205 (240)
T smart00053 204 LM 205 (240)
T ss_pred CC
Confidence 97
No 279
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=7.6e-09 Score=97.14 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=83.7
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
+.-.|+|++ +|.+++|||-|+.++....-. .|.+.-|.++....++...
T Consensus 11 ~dylFKiVl---iGDS~VGKsnLlsRftrnEF~----------------~~SksTIGvef~t~t~~vd------------ 59 (222)
T KOG0087|consen 11 YDYLFKIVL---IGDSAVGKSNLLSRFTRNEFS----------------LESKSTIGVEFATRTVNVD------------ 59 (222)
T ss_pred cceEEEEEE---eCCCccchhHHHHHhcccccC----------------cccccceeEEEEeeceeec------------
Confidence 345688988 999999999999999321111 1111112222222222222
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~ 155 (584)
++..+..||||+|+++|..-+....+.|-||++|.|.+.....+...-| +++.. .+++++++.||+|+.
T Consensus 60 --~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 60 --GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred --CcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 4477889999999999998888899999999999999887777766666 33322 367788999999996
No 280
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.4e-08 Score=95.55 Aligned_cols=130 Identities=20% Similarity=0.246 Sum_probs=89.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|-+ +|..|||||+|.-.|.+... .+ ++ .+|......+... +
T Consensus 40 ~Vll---~Gl~dSGKT~LF~qL~~gs~------~~--Tv-----------tSiepn~a~~r~g----------------s 81 (238)
T KOG0090|consen 40 AVLL---VGLSDSGKTSLFTQLITGSH------RG--TV-----------TSIEPNEATYRLG----------------S 81 (238)
T ss_pred cEEE---EecCCCCceeeeeehhcCCc------cC--ee-----------eeeccceeeEeec----------------C
Confidence 4556 89999999999999965411 11 11 3555566666555 4
Q ss_pred eeEEEeCCCCCCCchHHHHHHhh---hcCeEEEEEeCCCCC---chhHHHHHHHHH-----hcCCceEEEEecCcccccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALR---ITDGALVVVDCIEGV---CVQTETVLRQAL-----GERIRPVLTVNKMDRCFLE 158 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~---~~D~ailvvda~~g~---~~~t~~~l~~~~-----~~~~p~ivviNK~D~~~~~ 158 (584)
....+||-|||..........+. .+-++|+|||+..-. ....+.++..+. ...+|++++.||-|+..
T Consensus 82 ~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t-- 159 (238)
T KOG0090|consen 82 ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT-- 159 (238)
T ss_pred cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh--
Confidence 55899999999998888877776 788999999997642 222222222221 33455679999999985
Q ss_pred ccCCHHHHHHHHHHHHHHHHHH
Q 007929 159 LQVDGEEAYQTFQKVIENANVI 180 (584)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~v~~~ 180 (584)
..+++-+++.++.-+..++..
T Consensus 160 -Akt~~~Ir~~LEkEi~~lr~s 180 (238)
T KOG0090|consen 160 -AKTAEKIRQQLEKEIHKLRES 180 (238)
T ss_pred -cCcHHHHHHHHHHHHHHHHHH
Confidence 667777777777777766654
No 281
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.81 E-value=8.2e-09 Score=100.34 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=60.5
Q ss_pred ceeEEEeCCCCCCCchHHHHH------Hhhh-cC-eEEEEEeCCCCCchhHH--HHH---HHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTA------ALRI-TD-GALVVVDCIEGVCVQTE--TVL---RQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~------~l~~-~D-~ailvvda~~g~~~~t~--~~l---~~~~~~~~p~ivviNK~D~~ 155 (584)
.+++.+|||||+.+....... ++.. -+ .++.|||....-.+.|- ..+ ..+.+..+|.|++.||.|..
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS 194 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence 478999999999874443322 2222 22 57888998665555554 222 33467899999999999999
Q ss_pred cccccCCHHHHHHHHHHHHHH
Q 007929 156 FLELQVDGEEAYQTFQKVIEN 176 (584)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~ 176 (584)
..++...+..-+..|++.+++
T Consensus 195 d~~fa~eWm~DfE~FqeAl~~ 215 (366)
T KOG1532|consen 195 DSEFALEWMTDFEAFQEALNE 215 (366)
T ss_pred ccHHHHHHHHHHHHHHHHHHh
Confidence 888877776666666666664
No 282
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.80 E-value=9.1e-09 Score=90.74 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=85.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+-++.+| +|.+|+|||+|+-++-.. .. .| +..+ .+.++...-+....
T Consensus 6 dhLfkllI---igDsgVGKssLl~rF~dd--tF----s~-sYit---------TiGvDfkirTv~i~------------- 53 (198)
T KOG0079|consen 6 DHLFKLLI---IGDSGVGKSSLLLRFADD--TF----SG-SYIT---------TIGVDFKIRTVDIN------------- 53 (198)
T ss_pred HHHHHHHe---ecCCcccHHHHHHHHhhc--cc----cc-ceEE---------EeeeeEEEEEeecC-------------
Confidence 45567788 999999999999988322 11 11 0000 02223223333322
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc---CCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---RIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~---~~p~ivviNK~D~~~ 156 (584)
+...++.||||+|.+.|...+....+...++++|.|.+.|-......-|-+-.+. .+|-++|.||.|.+.
T Consensus 54 -G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 54 -GDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred -CcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc
Confidence 4478899999999999999999999999999999999999877777777554443 567789999999984
No 283
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.79 E-value=5.2e-09 Score=93.22 Aligned_cols=116 Identities=20% Similarity=0.200 Sum_probs=82.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
-.|+|++ +|.+=+|||+|+-+..... +.+.+ -.|++++..+-..+ ..
T Consensus 12 ~~FK~VL---LGEGCVGKtSLVLRy~Enk------------Fn~kH------lsTlQASF~~kk~n------------~e 58 (218)
T KOG0088|consen 12 FKFKIVL---LGEGCVGKTSLVLRYVENK------------FNCKH------LSTLQASFQNKKVN------------VE 58 (218)
T ss_pred eeeEEEE---EcCCccchhHHHHHHHHhh------------cchhh------HHHHHHHHhhcccc------------cc
Confidence 3578888 9999999999998875321 11111 12333333222111 12
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH----HHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l----~~~~~~~~p~ivviNK~D~~ 155 (584)
+....++||||+|++.|-..=--..|.++||++|.|.++....|-.+-| +.++-..+-.++|.||+|+.
T Consensus 59 d~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 59 DCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred cceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 3367799999999999877766777999999999999999988888777 44444556678999999997
No 284
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.78 E-value=2.9e-09 Score=85.65 Aligned_cols=73 Identities=36% Similarity=0.550 Sum_probs=59.4
Q ss_pred CceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-Eec
Q 007929 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLT 460 (584)
Q Consensus 382 g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~ 460 (584)
|+ ++++||+||+|++||+|++++ +.+..+ ....+|.+|+.+++....++..+.||+++++.++++. .+.| |||
T Consensus 1 G~-v~~grV~sG~l~~gd~v~~~~-~~~~~~---~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~-i~~Gdtl~ 74 (74)
T PF03144_consen 1 GR-VATGRVYSGTLKKGDKVRVLP-NGTGKK---GQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDA-IRRGDTLT 74 (74)
T ss_dssp EE-EEEEEEEESEEETTEEEEEES-TTTTEE---CEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSC-SSTTEEEE
T ss_pred CE-EEEEEEEEeEEcCCCEEEECc-cCCcce---eeeeecccccccccCccEeCCceeeEEEEEEcCCCCC-cCcCCEEC
Confidence 44 899999999999999999876 422211 1236999999999999999999999999999999982 1566 775
No 285
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=2.1e-08 Score=92.55 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=87.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
....+|.+ +|--+|||||++..| +.+.+... --|+....-.+.++
T Consensus 15 ~~e~~Ilm---lGLD~AGKTTILykL--k~~E~vtt-----------------vPTiGfnVE~v~yk------------- 59 (181)
T KOG0070|consen 15 KKEMRILM---VGLDAAGKTTILYKL--KLGEIVTT-----------------VPTIGFNVETVEYK------------- 59 (181)
T ss_pred cceEEEEE---EeccCCCceeeeEee--ccCCcccC-----------------CCccccceeEEEEc-------------
Confidence 34567888 999999999999888 33322211 13666667777777
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC--CchhHHHHHHHHHh---cCCceEEEEecCcccccccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VCVQTETVLRQALG---ERIRPVLTVNKMDRCFLELQ 160 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g--~~~~t~~~l~~~~~---~~~p~ivviNK~D~~~~~~~ 160 (584)
+..+++||.-|+..+..-...+.+..+++|+|||+++- +...-+++.+.+.. .+.|.+++.||.|.+. .
T Consensus 60 ---n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~---a 133 (181)
T KOG0070|consen 60 ---NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG---A 133 (181)
T ss_pred ---ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc---c
Confidence 89999999999999999999999999999999999875 23333334444332 2667889999999986 4
Q ss_pred CCHH
Q 007929 161 VDGE 164 (584)
Q Consensus 161 ~~~~ 164 (584)
+++.
T Consensus 134 ls~~ 137 (181)
T KOG0070|consen 134 LSAA 137 (181)
T ss_pred CCHH
Confidence 4543
No 286
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.72 E-value=1.8e-07 Score=96.68 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=44.8
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH--HHHHHHhcCCceEEEEecCcccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~--~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
....++.+.||||+|... .++. ....||.+++|++...|...|... ++.. .-++|+||+|+..
T Consensus 144 ~~~~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~------aDIiVVNKaDl~~ 208 (332)
T PRK09435 144 CEAAGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMEL------ADLIVINKADGDN 208 (332)
T ss_pred HhccCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhh------hheEEeehhcccc
Confidence 445589999999999874 3322 577899999998866666555532 2222 2389999999873
No 287
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.70 E-value=1e-07 Score=98.88 Aligned_cols=134 Identities=16% Similarity=0.201 Sum_probs=80.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCcccccc-CCCeeeeCChhhHhhhc---cceecceE---EEEeecchhhhh
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV-AGDVRMTDTRQDEAERG---ITIKSTGI---SLYYEMTDAALK 79 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~-~g~~~~~D~~~~E~~r~---~Ti~~~~~---~~~~~~~~~~~~ 79 (584)
..+-|++ +|++++|||||+++|....-.-.-.. ....+..|..+.... | +|.+...+ .....
T Consensus 16 G~IyIGv---vGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~-GktItTTePkfvP~kAvEI~------- 84 (492)
T TIGR02836 16 GDIYIGV---VGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAA-GKTIMTTEPKFVPNEAVEIN------- 84 (492)
T ss_pred CcEEEEE---EcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCC-CCCcccCCCccccCcceEEe-------
Confidence 3456666 99999999999999976622110000 000111222222111 2 22222221 01111
Q ss_pred cccccCCCCceeEEEeCCCCCCC-------------------------chHH----HHHHhh-hcCeEEEEE-eCC----
Q 007929 80 SYRGERQGNEYLINLIDSPGHVD-------------------------FSSE----VTAALR-ITDGALVVV-DCI---- 124 (584)
Q Consensus 80 ~~~~~~~~~~~~inliDTPG~~d-------------------------f~~e----~~~~l~-~~D~ailvv-da~---- 124 (584)
...+-..++.+|||+|+.+ |... +...+. .+|.+|+|. |++
T Consensus 85 ----~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI 160 (492)
T TIGR02836 85 ----INEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDI 160 (492)
T ss_pred ----ccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccc
Confidence 0112246789999999754 2211 456677 899999999 886
Q ss_pred --CCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 125 --EGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 125 --~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.....++++..+.+.++|.++++||.|-.
T Consensus 161 ~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 161 PREDYVEAEERVIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 5666677788888888999999999999943
No 288
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.70 E-value=3.5e-07 Score=92.94 Aligned_cols=116 Identities=14% Similarity=0.187 Sum_probs=69.5
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|.+|+||||++|+|+...........+ .|.........+.
T Consensus 36 ~~~~rIll---vGktGVGKSSliNsIlG~~v~~vs~f~s---------------~t~~~~~~~~~~~------------- 84 (313)
T TIGR00991 36 VSSLTILV---MGKGGVGKSSTVNSIIGERIATVSAFQS---------------EGLRPMMVSRTRA------------- 84 (313)
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHhCCCcccccCCCC---------------cceeEEEEEEEEC-------------
Confidence 46678999 9999999999999998654322211111 1111112222334
Q ss_pred CCCceeEEEeCCCCCCCchH---HHHHHhh------hcCeEEEEEeCCC-CCchhHHHHHHHHHhc-----CCceEEEEe
Q 007929 86 QGNEYLINLIDSPGHVDFSS---EVTAALR------ITDGALVVVDCIE-GVCVQTETVLRQALGE-----RIRPVLTVN 150 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~---e~~~~l~------~~D~ailvvda~~-g~~~~t~~~l~~~~~~-----~~p~ivviN 150 (584)
+.++++|||||..+... +....++ ..|++++|.+... ........+++.+... ..+.|+++|
T Consensus 85 ---G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfT 161 (313)
T TIGR00991 85 ---GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLT 161 (313)
T ss_pred ---CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEE
Confidence 78999999999887421 2222233 4788888854332 2333334444433221 246889999
Q ss_pred cCccc
Q 007929 151 KMDRC 155 (584)
Q Consensus 151 K~D~~ 155 (584)
+.|..
T Consensus 162 h~d~~ 166 (313)
T TIGR00991 162 HAQFS 166 (313)
T ss_pred CCccC
Confidence 99965
No 289
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.69 E-value=6.1e-08 Score=93.24 Aligned_cols=115 Identities=23% Similarity=0.279 Sum_probs=81.8
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceE-EEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~-~~~~~~~~~~~~~~~~~~ 85 (584)
+..+|++ +|.+|+|||+|+-++++..- ..+++ -|+..+.. .+..
T Consensus 2 ~~~kvvv---lG~~gVGKSal~~qf~~~~f-----------~~~y~-------ptied~y~k~~~v-------------- 46 (196)
T KOG0395|consen 2 REYKVVV---LGAGGVGKSALTIQFLTGRF-----------VEDYD-------PTIEDSYRKELTV-------------- 46 (196)
T ss_pred CceEEEE---ECCCCCCcchheeeeccccc-----------ccccC-------CCccccceEEEEE--------------
Confidence 4578999 99999999999999965322 11111 12221111 1111
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH-----hcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~-----~~~~p~ivviNK~D~~~ 156 (584)
++....+.|+||+|..+|...-...++.+|+.++|++.++--+.+....+++-+ ...+|+++|.||+|+..
T Consensus 47 ~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 47 DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 123678889999999999999999999999999999999876665554443322 24679999999999983
No 290
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=2.3e-07 Score=81.93 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=80.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
--+++.| +|...+|||+++-+.+..+-.+. .+ +.+.|+...-++ |. +
T Consensus 20 ymfKlli---iGnssvGKTSfl~ry~ddSFt~a-------fv---------sTvGidFKvKTv-yr-------------~ 66 (193)
T KOG0093|consen 20 YMFKLLI---IGNSSVGKTSFLFRYADDSFTSA-------FV---------STVGIDFKVKTV-YR-------------S 66 (193)
T ss_pred ceeeEEE---EccCCccchhhhHHhhccccccc-------ee---------eeeeeeEEEeEe-ee-------------c
Confidence 3458888 99999999999988743221110 00 001122111111 12 2
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH----HhcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~----~~~~~p~ivviNK~D~~~ 156 (584)
++..++.+|||.|++.+..-+-...|.+++.|++.|.+..-.....+-|-.. .-.+.|+|++.||+|+..
T Consensus 67 ~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 67 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS 140 (193)
T ss_pred ccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc
Confidence 3457899999999999988888999999999999999876555555555332 235889999999999973
No 291
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.67 E-value=9e-08 Score=104.78 Aligned_cols=110 Identities=25% Similarity=0.321 Sum_probs=80.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+||+ +|++|+|||||.|+|-+.. .+ -| +| .|.|++-....+.++
T Consensus 4 ~~val---vGNPNvGKTtlFN~LTG~~---q~--Vg-Nw----------pGvTVEkkeg~~~~~---------------- 48 (653)
T COG0370 4 LTVAL---VGNPNVGKTTLFNALTGAN---QK--VG-NW----------PGVTVEKKEGKLKYK---------------- 48 (653)
T ss_pred ceEEE---ecCCCccHHHHHHHHhccC---ce--ec-CC----------CCeeEEEEEEEEEec----------------
Confidence 45899 9999999999999993221 11 11 12 378999888888888
Q ss_pred ceeEEEeCCCCCCCchHH------HHHHh--hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSE------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e------~~~~l--~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+.++|.||--++... +...+ ...|.+|-||||+.= .....+--|+.+.++|+++++|++|..
T Consensus 49 ~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 49 GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 889999999997665432 22333 357999999999742 222233345678899999999999987
No 292
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.65 E-value=4.8e-08 Score=91.38 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=47.4
Q ss_pred ceeEEEeCCCCCCCch----HHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecC
Q 007929 89 EYLINLIDSPGHVDFS----SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKM 152 (584)
Q Consensus 89 ~~~inliDTPG~~df~----~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~ 152 (584)
...+.||||||..+.. ..+...+..+|.+|+|+++......+....|.+......+ .++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4568999999985422 4467788999999999999998776666666666665554 56788884
No 293
>PRK13768 GTPase; Provisional
Probab=98.56 E-value=1.4e-07 Score=94.65 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=48.0
Q ss_pred ceeEEEeCCCCCCCchH---H---HHHHhhh--cCeEEEEEeCCCCCchhHHHHHHHH-----HhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSS---E---VTAALRI--TDGALVVVDCIEGVCVQTETVLRQA-----LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~---e---~~~~l~~--~D~ailvvda~~g~~~~t~~~l~~~-----~~~~~p~ivviNK~D~~ 155 (584)
+..+.+|||||+.++.. . ..+.+.. ++++++|+|+..+....+......+ ...++|+++|+||+|+.
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 34789999999877432 2 2222333 8999999999887766654333222 25689999999999997
Q ss_pred c
Q 007929 156 F 156 (584)
Q Consensus 156 ~ 156 (584)
.
T Consensus 176 ~ 176 (253)
T PRK13768 176 S 176 (253)
T ss_pred C
Confidence 4
No 294
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=8.3e-07 Score=77.92 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=83.7
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
|.....|.. +|-.++||||++-.|-...-..+- -|+..+.-++.|+
T Consensus 14 ~~KE~~ilm---lGLd~aGKTtiLyKLkl~~~~~~i-------------------pTvGFnvetVtyk------------ 59 (180)
T KOG0071|consen 14 GNKEMRILM---LGLDAAGKTTILYKLKLGQSVTTI-------------------PTVGFNVETVTYK------------ 59 (180)
T ss_pred CcccceEEE---EecccCCceehhhHHhcCCCcccc-------------------cccceeEEEEEee------------
Confidence 345678888 899999999999888322111111 1333344455666
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCch-hHHHHHHHHHh----cCCceEEEEecCccccccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRCFLEL 159 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~-~t~~~l~~~~~----~~~p~ivviNK~D~~~~~~ 159 (584)
+.++|++|.-|.........+.....-+.|+|+|+.+.... ..+.-+..+.. ...+++++.||-|++.
T Consensus 60 ----N~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--- 132 (180)
T KOG0071|consen 60 ----NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--- 132 (180)
T ss_pred ----eeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc---
Confidence 89999999999999999999999999999999999765221 22222222222 3567789999999996
Q ss_pred cCCHHH
Q 007929 160 QVDGEE 165 (584)
Q Consensus 160 ~~~~~~ 165 (584)
...|.+
T Consensus 133 A~~pqe 138 (180)
T KOG0071|consen 133 AMKPQE 138 (180)
T ss_pred ccCHHH
Confidence 455543
No 295
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.53 E-value=1.4e-06 Score=85.19 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=68.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+|.+ +|..|+||||+.|.||.....-..... ...|.........+.
T Consensus 1 l~Ill---lG~tGsGKSs~~N~ilg~~~f~~~~~~--------------~~~t~~~~~~~~~~~---------------- 47 (212)
T PF04548_consen 1 LRILL---LGKTGSGKSSLGNSILGKEVFKSGSSA--------------KSVTQECQKYSGEVD---------------- 47 (212)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHTSS-SS--TTT--------------SS--SS-EEEEEEET----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcccceeecccc--------------CCcccccceeeeeec----------------
Confidence 36777 999999999999999866543221111 113334444444555
Q ss_pred ceeEEEeCCCCCCC-------chHHHHHHhh----hcCeEEEEEeCCCCCchhHHHHHHHHHhc-C----CceEEEEecC
Q 007929 89 EYLINLIDSPGHVD-------FSSEVTAALR----ITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNKM 152 (584)
Q Consensus 89 ~~~inliDTPG~~d-------f~~e~~~~l~----~~D~ailvvda~~g~~~~t~~~l~~~~~~-~----~p~ivviNK~ 152 (584)
+..+++|||||..| ...++..++. ..+++|+|++.. .........++.+.+. + .-.+|+++..
T Consensus 48 g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~ 126 (212)
T PF04548_consen 48 GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHA 126 (212)
T ss_dssp TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhc
Confidence 89999999999754 2233444433 367899999987 6666666666554331 1 2367888988
Q ss_pred cccc
Q 007929 153 DRCF 156 (584)
Q Consensus 153 D~~~ 156 (584)
|...
T Consensus 127 d~~~ 130 (212)
T PF04548_consen 127 DELE 130 (212)
T ss_dssp GGGT
T ss_pred cccc
Confidence 8764
No 296
>COG2262 HflX GTPases [General function prediction only]
Probab=98.53 E-value=3.3e-07 Score=94.82 Aligned_cols=115 Identities=26% Similarity=0.211 Sum_probs=75.5
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
....|++ +|-.|+|||||.|+|....- ..-|. .=-|.+...-.+.+..
T Consensus 191 ~~p~vaL---vGYTNAGKSTL~N~LT~~~~----------~~~d~------LFATLdpttR~~~l~~------------- 238 (411)
T COG2262 191 GIPLVAL---VGYTNAGKSTLFNALTGADV----------YVADQ------LFATLDPTTRRIELGD------------- 238 (411)
T ss_pred CCCeEEE---EeeccccHHHHHHHHhccCe----------ecccc------ccccccCceeEEEeCC-------------
Confidence 4468888 99999999999999942111 00111 1135555555555541
Q ss_pred CCceeEEEeCCCCCCCch--------HHHHHHhhhcCeEEEEEeCCCCCch-hH---HHHHHHHHhcCCceEEEEecCcc
Q 007929 87 GNEYLINLIDSPGHVDFS--------SEVTAALRITDGALVVVDCIEGVCV-QT---ETVLRQALGERIRPVLTVNKMDR 154 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~--------~e~~~~l~~~D~ailvvda~~g~~~-~t---~~~l~~~~~~~~p~ivviNK~D~ 154 (584)
+..+.+-||-|..+=. ..+......||..+.|||+++.... +- ..++..+-...+|+|+|.||+|+
T Consensus 239 --g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 239 --GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL 316 (411)
T ss_pred --CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 6889999999986511 2233445689999999999987322 22 23334433356799999999998
Q ss_pred c
Q 007929 155 C 155 (584)
Q Consensus 155 ~ 155 (584)
.
T Consensus 317 ~ 317 (411)
T COG2262 317 L 317 (411)
T ss_pred c
Confidence 7
No 297
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.52 E-value=1.3e-06 Score=88.67 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=73.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
-.++|.+ +|..|.|||||++.|+......... ..+.......+..++......+.- +
T Consensus 3 ~~fnImV---vG~sG~GKTTFIntL~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~e--------------~ 59 (281)
T PF00735_consen 3 FNFNIMV---VGESGLGKTTFINTLFNSDIISEDS------SIPPPSASISRTLEIEERTVELEE--------------N 59 (281)
T ss_dssp EEEEEEE---EECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEE--------------T
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHHhcccccccc------cccccccccccccceeeEEEEecc--------------C
Confidence 3578888 9999999999999997643322110 001111112222333333222221 1
Q ss_pred CCceeEEEeCCCCCCCchHH------H--------HHHh-------------hhcCeEEEEEeCC-CCCchhHHHHHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSE------V--------TAAL-------------RITDGALVVVDCI-EGVCVQTETVLRQA 138 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e------~--------~~~l-------------~~~D~ailvvda~-~g~~~~t~~~l~~~ 138 (584)
+-...+++|||||+.|.... + ...+ ...|+||+.++++ .|+.......++.
T Consensus 60 ~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~- 138 (281)
T PF00735_consen 60 GVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKR- 138 (281)
T ss_dssp CEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHH-
T ss_pred CcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHH-
Confidence 33678999999998753221 0 1111 1357899999986 5888888888887
Q ss_pred HhcCCceEEEEecCcccc
Q 007929 139 LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 139 ~~~~~p~ivviNK~D~~~ 156 (584)
+...+.+|-||.|.|...
T Consensus 139 Ls~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 139 LSKRVNVIPVIAKADTLT 156 (281)
T ss_dssp HTTTSEEEEEESTGGGS-
T ss_pred hcccccEEeEEecccccC
Confidence 567788999999999874
No 298
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.52 E-value=8.6e-07 Score=88.39 Aligned_cols=108 Identities=21% Similarity=0.190 Sum_probs=66.0
Q ss_pred ccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCceeEEEeC
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD 96 (584)
+|-+|+|||||+++|-...- + +-++.- +|+.....+..+.. ...+.+-|
T Consensus 202 VG~PNAGKSTLL~als~AKp---k-------Va~YaF------TTL~P~iG~v~ydd---------------f~q~tVAD 250 (366)
T KOG1489|consen 202 VGFPNAGKSTLLNALSRAKP---K-------VAHYAF------TTLRPHIGTVNYDD---------------FSQITVAD 250 (366)
T ss_pred ecCCCCcHHHHHHHhhccCC---c-------ccccce------eeeccccceeeccc---------------cceeEecc
Confidence 99999999999999932211 1 111110 34454444555541 23399999
Q ss_pred CCCCCC-------chHHHHHHhhhcCeEEEEEeCCCC---CchhHH-HHHHHHHh-----cCCceEEEEecCccc
Q 007929 97 SPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCVQTE-TVLRQALG-----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 97 TPG~~d-------f~~e~~~~l~~~D~ailvvda~~g---~~~~t~-~~l~~~~~-----~~~p~ivviNK~D~~ 155 (584)
.||... .--+..+-+..|+..++|||.+.+ --.++. .+|..+.. ...|.++|+||+|.+
T Consensus 251 iPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 251 IPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred CccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 999753 112233445567999999999877 222222 22333221 255788999999996
No 299
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.45 E-value=9.4e-07 Score=77.65 Aligned_cols=114 Identities=19% Similarity=0.178 Sum_probs=78.5
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|.+ +|-.++||||++..|-.. |-+..- -|-..+..+..+..
T Consensus 15 ~rEirill---lGldnAGKTT~LKqL~sE---------------D~~hlt----pT~GFn~k~v~~~g------------ 60 (185)
T KOG0074|consen 15 RREIRILL---LGLDNAGKTTFLKQLKSE---------------DPRHLT----PTNGFNTKKVEYDG------------ 60 (185)
T ss_pred cceEEEEE---EecCCCcchhHHHHHccC---------------Chhhcc----ccCCcceEEEeecC------------
Confidence 56788888 999999999999999221 111111 12223334444441
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCch--hHHHHHHHH---HhcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV--QTETVLRQA---LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~--~t~~~l~~~---~~~~~p~ivviNK~D~~~ 156 (584)
..++|+||.-|+.........+....|+.|+|+|+.+.... ..+++.... .-..+|+.++.||-|+..
T Consensus 61 ---~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 61 ---TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred ---cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 58999999999999999999999999999999997764221 111222221 123678889999999984
No 300
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.41 E-value=1.6e-06 Score=69.98 Aligned_cols=72 Identities=31% Similarity=0.351 Sum_probs=56.5
Q ss_pred eEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 368 l~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
+.++|++++.++..|+ ++++||++|+|++|+.+++.+. ....+ .+|.+|+... .+++++.|||++++.
T Consensus 1 ~~~~v~~~~~~~~~g~-v~~~rv~~G~l~~g~~v~~~~~--~~~~~-----~~i~~i~~~~----~~~~~~~aG~~~~~~ 68 (83)
T cd01342 1 LRALVFKVFKDKGRGT-VATGRVESGTLKKGDKVRVGPG--GGGVK-----GKVKSLKRFK----GEVDEAVAGDIVGIV 68 (83)
T ss_pred CeeEEEEEEEeCCceE-EEEEEEeeCEEecCCEEEEecC--CceeE-----EEEeEeEecC----ceeceecCCCEEEEE
Confidence 3578889888887777 9999999999999999997652 11122 5788887654 678999999999998
Q ss_pred ccCc
Q 007929 448 GLDQ 451 (584)
Q Consensus 448 gl~~ 451 (584)
..+.
T Consensus 69 ~~~~ 72 (83)
T cd01342 69 LKDK 72 (83)
T ss_pred Eccc
Confidence 7654
No 301
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=7e-07 Score=94.27 Aligned_cols=107 Identities=26% Similarity=0.300 Sum_probs=83.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
+-||+ +|++|.|||||+.+|+.. ++.+.-.+...-||+.++ +
T Consensus 70 fIvav---vGPpGtGKsTLirSlVrr-------------~tk~ti~~i~GPiTvvsg----------------------K 111 (1077)
T COG5192 70 FIVAV---VGPPGTGKSTLIRSLVRR-------------FTKQTIDEIRGPITVVSG----------------------K 111 (1077)
T ss_pred eEEEe---ecCCCCChhHHHHHHHHH-------------HHHhhhhccCCceEEeec----------------------c
Confidence 56777 999999999999999632 222333333333444332 3
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~~ 156 (584)
..+|+|+.||. | ...++....+||.+++++|+.-|....|-+.+..+...+.|.+ -|++.+|+..
T Consensus 112 ~RRiTflEcp~--D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 112 TRRITFLECPS--D-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred eeEEEEEeChH--H-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc
Confidence 68899999993 4 4667788899999999999999999999999999999999977 5899999873
No 302
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.41 E-value=2.7e-07 Score=84.13 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=85.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.+++.| +|..++||||++.+.. .|..++.... +...|+.+...+ +. .+
T Consensus 18 e~aiK~vi---vGng~VGKssmiqryC--kgifTkdykk-tIgvdflerqi~----v~-------~E------------- 67 (246)
T KOG4252|consen 18 ERAIKFVI---VGNGSVGKSSMIQRYC--KGIFTKDYKK-TIGVDFLERQIK----VL-------IE------------- 67 (246)
T ss_pred hhhEEEEE---ECCCccchHHHHHHHh--cccccccccc-ccchhhhhHHHH----hh-------HH-------------
Confidence 36689999 9999999999999983 3444443322 334454432211 11 11
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH---hcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~---~~~~p~ivviNK~D~~ 155 (584)
+.++-+|||.|+.+|..-+-...|.|.+++||++.++--......-|+.-. -..+|.+++-||+|+.
T Consensus 68 ---dvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 68 ---DVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred ---HHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 566778999999999988889999999999999998877666665664422 3588999999999998
No 303
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.40 E-value=1.7e-07 Score=92.90 Aligned_cols=66 Identities=18% Similarity=0.121 Sum_probs=37.3
Q ss_pred eEEEeCCCCCCCchHHHHH------Hhh--hcCeEEEEEeCCCCCchhHH-HH----HHHHHhcCCceEEEEecCcccc
Q 007929 91 LINLIDSPGHVDFSSEVTA------ALR--ITDGALVVVDCIEGVCVQTE-TV----LRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 91 ~inliDTPG~~df~~e~~~------~l~--~~D~ailvvda~~g~~~~t~-~~----l~~~~~~~~p~ivviNK~D~~~ 156 (584)
.+.|+||||+.+|...... .+. ..=++++++|+..--.+..- .. +....+.++|.|.++||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 7889999999887654333 333 23368999998754332222 11 1223457999999999999985
No 304
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.36 E-value=4.3e-06 Score=74.56 Aligned_cols=117 Identities=19% Similarity=0.259 Sum_probs=83.8
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc-eEEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~-~~~~~~~~~~~~~~~~~~~~ 85 (584)
+.-+|.+ +|.-++|||.++++|+|.+..+...... ||.-. ..+++..
T Consensus 8 k~~kVvV---cG~k~VGKTaileQl~yg~~~~~~e~~p----------------TiEDiY~~svet~------------- 55 (198)
T KOG3883|consen 8 KVCKVVV---CGMKSVGKTAILEQLLYGNHVPGTELHP----------------TIEDIYVASVETD------------- 55 (198)
T ss_pred cceEEEE---ECCccccHHHHHHHHHhccCCCCCcccc----------------chhhheeEeeecC-------------
Confidence 3457888 9999999999999999988766543221 33221 2222222
Q ss_pred CCCceeEEEeCCCCCCCchHH-HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh-----cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e-~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~-----~~~p~ivviNK~D~~ 155 (584)
.+....+.|-||.|..+.-.| -...++.+|+.++|.|..+.-..|...+++.-+. ..+|+++..||.|+.
T Consensus 56 rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 56 RGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred CChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 122456889999999887344 4567899999999999988777777777655432 367888999999996
No 305
>PTZ00099 rab6; Provisional
Probab=98.34 E-value=1.1e-06 Score=83.23 Aligned_cols=67 Identities=25% Similarity=0.265 Sum_probs=53.4
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh---cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~---~~~p~ivviNK~D~~ 155 (584)
...++||||||+..|.......++.||++|+|+|.+.....+....|.. +.+ ..+|+++|+||+|+.
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 6889999999999999988899999999999999988655544444432 222 356778999999986
No 306
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=3.7e-06 Score=73.67 Aligned_cols=116 Identities=17% Similarity=0.101 Sum_probs=75.1
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++-.| +|..|+|||.|+-.+-...-+.+.++. |.+.....-++.. +
T Consensus 11 ifkyii---igdmgvgkscllhqftekkfmadcpht----------------igvefgtriievs--------------g 57 (215)
T KOG0097|consen 11 IFKYII---IGDMGVGKSCLLHQFTEKKFMADCPHT----------------IGVEFGTRIIEVS--------------G 57 (215)
T ss_pred eEEEEE---EccccccHHHHHHHHHHHHHhhcCCcc----------------cceecceeEEEec--------------C
Confidence 456667 899999999999988443222222111 2222222222222 3
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHhcCCc---eEEEEecCcccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALGERIR---PVLTVNKMDRCF 156 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~~~~p---~ivviNK~D~~~ 156 (584)
...++.||||+|++.|..-+.+..|.+-++++|.|.+..-......-|.. +.....| ++++.||.|+..
T Consensus 58 qkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 58 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred cEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 36788999999999999999999999999999999876433333333322 2222223 457889999973
No 307
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.32 E-value=2e-06 Score=89.77 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=62.7
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhcc---ceecceEEEEeecchhhhhcc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGI---TIKSTGISLYYEMTDAALKSY 81 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~---Ti~~~~~~~~~~~~~~~~~~~ 81 (584)
....++||| +|.+|+|||||+|+|.+-.. ...| ....|. |+... .|..
T Consensus 32 ~~~~l~IaV---~G~sGsGKSSfINalrGl~~----~d~~----------aA~tGv~etT~~~~----~Y~~-------- 82 (376)
T PF05049_consen 32 DNAPLNIAV---TGESGSGKSSFINALRGLGH----EDEG----------AAPTGVVETTMEPT----PYPH-------- 82 (376)
T ss_dssp HH--EEEEE---EESTTSSHHHHHHHHTT--T----TSTT----------S--SSSHSCCTS-E----EEE---------
T ss_pred hcCceEEEE---ECCCCCCHHHHHHHHhCCCC----CCcC----------cCCCCCCcCCCCCe----eCCC--------
Confidence 346789999 99999999999999932111 0011 011122 22221 2221
Q ss_pred cccCCCCceeEEEeCCCCCC--CchHHHH---HHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 82 RGERQGNEYLINLIDSPGHV--DFSSEVT---AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 82 ~~~~~~~~~~inliDTPG~~--df~~e~~---~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
.+--.+.+||.||.. +|..+-. -.+...|..|++.+. ........+++.+.+.++|+.+|-+|+|...
T Consensus 83 -----p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl 155 (376)
T PF05049_consen 83 -----PKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDL 155 (376)
T ss_dssp -----SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHH
T ss_pred -----CCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccH
Confidence 112358899999963 4433321 246788987776653 3445566677888889999999999999853
No 308
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=9.9e-07 Score=80.43 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=82.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|.| +|.-+|||||+++++=..-. + .-|+ + .+.+ --.|+.....++...
T Consensus 15 Ke~y~vlI---lgldnAGKttfLe~~Kt~~~---~-~~~~---l--~~~k--i~~tvgLnig~i~v~------------- 67 (197)
T KOG0076|consen 15 KEDYSVLI---LGLDNAGKTTFLEALKTDFS---K-AYGG---L--NPSK--ITPTVGLNIGTIEVC------------- 67 (197)
T ss_pred hhhhhhee---eccccCCchhHHHHHHHHHH---h-hhcC---C--CHHH--eecccceeecceeec-------------
Confidence 35678899 99999999999999821100 0 0000 0 0111 113445555555555
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCc-----hhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----VQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~-----~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
...++|||.-|+....+........|.++|+||||.+.-. .+-+.+..+-...++|+++.+||-|+..
T Consensus 68 ---~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 68 ---NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN 140 (197)
T ss_pred ---cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh
Confidence 6789999999999888888889999999999999987421 1222333333456999999999999984
No 309
>PTZ00258 GTP-binding protein; Provisional
Probab=98.25 E-value=3.2e-06 Score=89.17 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=59.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecch-hhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~-~~~~~~~~~~ 85 (584)
..++|+| +|.+|+|||||.++|... ........ +.|++.....+.+.... ..+.+.....
T Consensus 20 ~~~kvgI---VG~PNvGKSTLfnaLt~~-~~~v~n~p---------------ftTi~p~~g~v~~~d~r~~~l~~~~~~~ 80 (390)
T PTZ00258 20 NNLKMGI---VGLPNVGKSTTFNALCKQ-QVPAENFP---------------FCTIDPNTARVNVPDERFDWLCKHFKPK 80 (390)
T ss_pred CCcEEEE---ECCCCCChHHHHHHHhcC-cccccCCC---------------CCcccceEEEEecccchhhHHHHHcCCc
Confidence 4568888 999999999999999332 22221112 24445444444333100 0001111111
Q ss_pred CCCceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCC
Q 007929 86 QGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI 124 (584)
Q Consensus 86 ~~~~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~ 124 (584)
......+.++||||... ........++.+|++++|||+.
T Consensus 81 ~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 81 SIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 22245689999999653 3335667789999999999985
No 310
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.23 E-value=3.6e-06 Score=82.64 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=81.5
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+...+++ .|..|+|||+|++.++........... +.|-|....+.. -
T Consensus 135 ~~pe~~~---~g~SNVGKSSLln~~~r~k~~~~t~k~-------------K~g~Tq~in~f~---v-------------- 181 (320)
T KOG2486|consen 135 KRPELAF---YGRSNVGKSSLLNDLVRVKNIADTSKS-------------KNGKTQAINHFH---V-------------- 181 (320)
T ss_pred CCceeee---ecCCcccHHHHHhhhhhhhhhhhhcCC-------------CCccceeeeeee---c--------------
Confidence 4467888 999999999999999654332111000 222333322221 1
Q ss_pred CCceeEEEeCCCCC----------CCchHHHHHHhhh---cCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCc
Q 007929 87 GNEYLINLIDSPGH----------VDFSSEVTAALRI---TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (584)
Q Consensus 87 ~~~~~inliDTPG~----------~df~~e~~~~l~~---~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D 153 (584)
+.+|.++|.||+ .||..-+...+.. .=.+.+++|++-++++.+...+..+-+.++|+.+|+||||
T Consensus 182 --~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~D 259 (320)
T KOG2486|consen 182 --GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCD 259 (320)
T ss_pred --cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhh
Confidence 678999999993 3455555555533 3357888999999999999999999999999999999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
+.
T Consensus 260 K~ 261 (320)
T KOG2486|consen 260 KQ 261 (320)
T ss_pred hh
Confidence 97
No 311
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=4.6e-06 Score=87.52 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=46.5
Q ss_pred ceeEEEeCCCCCC---CchHHHHHHhhhcC---eEEEEEeCCCCCchhHHHHHHHHHhcCCc------e-EEEEecCccc
Q 007929 89 EYLINLIDSPGHV---DFSSEVTAALRITD---GALVVVDCIEGVCVQTETVLRQALGERIR------P-VLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~---df~~e~~~~l~~~D---~ailvvda~~g~~~~t~~~l~~~~~~~~p------~-ivviNK~D~~ 155 (584)
++.+.||||||.. ++..+....+..++ -.++|++++.+....++.++......++| + =++++|+|-.
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 5689999999987 44455555555444 34999999998877776665554333332 2 2888999987
No 312
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.21 E-value=3.2e-05 Score=77.75 Aligned_cols=112 Identities=23% Similarity=0.278 Sum_probs=74.0
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.-.|++ +|.+++|||||++.|- +.-.+..+ ..+ .|......-+.|+
T Consensus 63 da~v~l---VGfPsvGKStLL~~LT---nt~seva~-----y~F--------TTl~~VPG~l~Y~--------------- 108 (365)
T COG1163 63 DATVAL---VGFPSVGKSTLLNKLT---NTKSEVAD-----YPF--------TTLEPVPGMLEYK--------------- 108 (365)
T ss_pred CeEEEE---EcCCCccHHHHHHHHh---CCCccccc-----cCc--------eecccccceEeec---------------
Confidence 357888 9999999999999992 21111111 111 2344444456666
Q ss_pred CceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc-----CCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~-----~~p~ivviNK~D~~ 155 (584)
+..|.++|+||..+ --.++.+.+|.||.+++|+|+...... -+.+.+.+... ..|+-+.+.|-++-
T Consensus 109 -ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~g 186 (365)
T COG1163 109 -GAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESG 186 (365)
T ss_pred -CceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccC
Confidence 89999999999754 124678899999999999999876543 33344554443 33566777775554
No 313
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.15 E-value=2.1e-05 Score=80.60 Aligned_cols=126 Identities=20% Similarity=0.303 Sum_probs=80.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
-.++|.+ +|..|.||||+++.|+...-.-.. ...+..+.-.+..+.+......+.-+
T Consensus 22 i~f~im~---~G~sG~GKttfiNtL~~~~l~~~~------~~~~~~~~~~~~~~~i~~~~~~l~e~-------------- 78 (373)
T COG5019 22 IDFTIMV---VGESGLGKTTFINTLFGTSLVDET------EIDDIRAEGTSPTLEIKITKAELEED-------------- 78 (373)
T ss_pred CceEEEE---ecCCCCchhHHHHhhhHhhccCCC------CccCcccccCCcceEEEeeeeeeecC--------------
Confidence 4567888 999999999999999877221111 11111111123334344333333222
Q ss_pred CCceeEEEeCCCCCCCchHHH--------------HHHh-------h-------hcCeEEEEEeCC-CCCchhHHHHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEV--------------TAAL-------R-------ITDGALVVVDCI-EGVCVQTETVLRQ 137 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~--------------~~~l-------~-------~~D~ailvvda~-~g~~~~t~~~l~~ 137 (584)
+-...+|+|||||..||+... ..++ | ..++||+.+.++ +|+.+...+..+.
T Consensus 79 ~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ 158 (373)
T COG5019 79 GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKR 158 (373)
T ss_pred CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHH
Confidence 335678999999998865421 1111 1 256899999875 6899999888877
Q ss_pred HHhcCCceEEEEecCcccc
Q 007929 138 ALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 138 ~~~~~~p~ivviNK~D~~~ 156 (584)
+...+-+|=||-|.|...
T Consensus 159 -ls~~vNlIPVI~KaD~lT 176 (373)
T COG5019 159 -LSKRVNLIPVIAKADTLT 176 (373)
T ss_pred -HhcccCeeeeeeccccCC
Confidence 455667788899999874
No 314
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.15 E-value=5.3e-06 Score=83.76 Aligned_cols=93 Identities=23% Similarity=0.193 Sum_probs=53.0
Q ss_pred ccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecch-hhhhcccccCCCCceeEEEe
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGERQGNEYLINLI 95 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~inli 95 (584)
+|.+|+|||||.++|..... ..... .+.|++.....+.+.... ..+.+.....+.-...+.++
T Consensus 4 vG~PN~GKSTLfn~Lt~~~~-~~~n~---------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lv 67 (274)
T cd01900 4 VGLPNVGKSTLFNALTKAGA-EAANY---------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFV 67 (274)
T ss_pred eCCCCCcHHHHHHHHhCCCC-ccccc---------------cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEE
Confidence 99999999999999944322 11111 124444444444333100 00000000111113469999
Q ss_pred CCCCCCC-------chHHHHHHhhhcCeEEEEEeCCC
Q 007929 96 DSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 96 DTPG~~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (584)
||||..+ +.......++.+|+++.|||+.+
T Consensus 68 D~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 68 DIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred ECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 9999653 23345667889999999999853
No 315
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.14 E-value=7.2e-06 Score=85.54 Aligned_cols=98 Identities=22% Similarity=0.200 Sum_probs=57.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecc-hhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMT-DAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~-~~~~~~~~~~~~~ 87 (584)
++|+| +|.+|+|||||.++|.... ...... .+.|++.....+.+... ...+.+.......
T Consensus 3 ~~vgI---VG~PNvGKSTLfnaLt~~~-~~v~ny---------------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~ 63 (364)
T PRK09601 3 LKCGI---VGLPNVGKSTLFNALTKAG-AEAANY---------------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKI 63 (364)
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCCC-Ceeccc---------------ccccccceEEEEEeccccchhhHHhcCCccc
Confidence 57788 9999999999999995432 111111 23455544434433310 0001111111112
Q ss_pred CceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCC
Q 007929 88 NEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 88 ~~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (584)
....+.++||||..+ +.......++.||+++.|||+..
T Consensus 64 ~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 64 VPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred cCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 234699999999654 22345667899999999999963
No 316
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.14 E-value=2.3e-05 Score=86.25 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=66.2
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|.+|+|||||+|+|+............ + |.........+.
T Consensus 118 slrIvL---VGKTGVGKSSLINSILGekvf~vss~~~--------------~-TTr~~ei~~~id--------------- 164 (763)
T TIGR00993 118 SLNILV---LGKSGVGKSATINSIFGEVKFSTDAFGM--------------G-TTSVQEIEGLVQ--------------- 164 (763)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhccccccccCCCC--------------C-ceEEEEEEEEEC---------------
Confidence 357888 9999999999999998765433221111 1 111112222333
Q ss_pred CceeEEEeCCCCCCCch------HHHHH----Hhh--hcCeEEEEEeCCCC-CchhHHHHHHHHHh---c--CCceEEEE
Q 007929 88 NEYLINLIDSPGHVDFS------SEVTA----ALR--ITDGALVVVDCIEG-VCVQTETVLRQALG---E--RIRPVLTV 149 (584)
Q Consensus 88 ~~~~inliDTPG~~df~------~e~~~----~l~--~~D~ailvvda~~g-~~~~t~~~l~~~~~---~--~~p~ivvi 149 (584)
+..+++|||||..+.. .++.. .+. .+|++|+|...... ........++.+.+ . -.-.||++
T Consensus 165 -G~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVF 243 (763)
T TIGR00993 165 -GVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTL 243 (763)
T ss_pred -CceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEE
Confidence 6889999999988642 12222 333 36777777654321 11122234433321 1 22468999
Q ss_pred ecCcccc
Q 007929 150 NKMDRCF 156 (584)
Q Consensus 150 NK~D~~~ 156 (584)
|..|...
T Consensus 244 ThgD~lp 250 (763)
T TIGR00993 244 THAASAP 250 (763)
T ss_pred eCCccCC
Confidence 9999873
No 317
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.12 E-value=4.1e-05 Score=72.50 Aligned_cols=66 Identities=23% Similarity=0.180 Sum_probs=54.8
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
..+.+.+|||||... ..+..++..+|.+++|+.+...-.....+.++.+.+.+.|..+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 478999999997754 467788899999999999987766677778887777788888999999975
No 318
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.12 E-value=1.9e-05 Score=64.90 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=51.5
Q ss_pred CeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE
Q 007929 367 PLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (584)
Q Consensus 367 pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav 446 (584)
||...|...+..+ .|. +..+||.+|++++||.|++++.+ .. .+|.+|.. ...++++|.|||.+++
T Consensus 1 p~r~~V~~v~~~~-~g~-vv~G~v~~G~i~~Gd~v~i~P~~----~~-----~~V~si~~----~~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQ-GGT-VVSGKVESGSIQKGDTLLVMPSK----ES-----VEVKSIYV----DDEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcC-CCc-EEEEEEeeeEEeCCCEEEEeCCC----cE-----EEEEEEEE----CCeECCEECCCCEEEE
Confidence 5677777777666 677 89999999999999999987643 22 46777763 3488999999999986
No 319
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=7e-06 Score=76.00 Aligned_cols=117 Identities=18% Similarity=0.169 Sum_probs=84.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
-+++.++ +|.+|.||||+..+.+. |.. |+..--|+......+.+. .+
T Consensus 9 ~~fklvl---vGdgg~gKtt~vkr~lt--geF----------------e~~y~at~Gv~~~pl~f~------------tn 55 (216)
T KOG0096|consen 9 LTFKLVL---VGDGGTGKTTFVKRHLT--GEF----------------EKTYPATLGVEVHPLLFD------------TN 55 (216)
T ss_pred ceEEEEE---ecCCcccccchhhhhhc--ccc----------------eecccCcceeEEeeeeee------------cc
Confidence 4788999 99999999999999852 211 222223455544444433 12
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHH--hcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL--GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~--~~~~p~ivviNK~D~~~ 156 (584)
.+..+++.|||.|.+.|.+..-...-.+-+|++++|...-+..+...-|. .+. ..++|++++.||.|...
T Consensus 56 ~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 56 RGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred cCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc
Confidence 33589999999999998877766667788999999999877766665552 222 34789999999999873
No 320
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=1.1e-05 Score=73.03 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=72.9
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
+...-++.+ +|--|+|||||+..| +...+. .-+. |...+.-.+...
T Consensus 17 ~kK~gKllF---lGLDNAGKTTLLHML--KdDrl~------qhvP-----------TlHPTSE~l~Ig------------ 62 (193)
T KOG0077|consen 17 YKKFGKLLF---LGLDNAGKTTLLHML--KDDRLG------QHVP-----------TLHPTSEELSIG------------ 62 (193)
T ss_pred hccCceEEE---EeecCCchhhHHHHH--cccccc------ccCC-----------CcCCChHHheec------------
Confidence 345568888 999999999999998 111000 0001 111111111222
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCch-hHHHHHHHH----HhcCCceEEEEecCcccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQA----LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~-~t~~~l~~~----~~~~~p~ivviNK~D~~~ 156 (584)
+.+++-+|.-||..-..-....+..+|+++++||+-+--.. ..+..+..+ .-.++|+++..||+|++.
T Consensus 63 ----~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 63 ----GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred ----CceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 78899999999976555556677899999999999764222 222222222 225899999999999995
No 321
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.10 E-value=7.3e-06 Score=84.45 Aligned_cols=63 Identities=19% Similarity=0.090 Sum_probs=42.7
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
..++.+.||||||... .....+..+|.++++.+...|...+... .. -..+|.++++||+|+..
T Consensus 124 ~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el~~~~--~~--l~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 124 AAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDLQGIK--AG--LMEIADIYVVNKADGEG 186 (300)
T ss_pred hCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHHHHHH--HH--HhhhccEEEEEcccccc
Confidence 3589999999999753 2234577889988887665443322221 11 13678899999999973
No 322
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.08 E-value=2.4e-05 Score=65.56 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=62.2
Q ss_pred CCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEE
Q 007929 365 EGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 444 (584)
Q Consensus 365 ~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIv 444 (584)
+.||...|..++.....|. +..+||.+|+++.||+|++++.+ .+ .+|.+|.. ...++++|.|||.|
T Consensus 2 ~~p~r~~V~~vf~~~g~g~-vv~G~v~~G~i~~gd~v~i~P~~----~~-----~~V~sI~~----~~~~~~~a~aG~~v 67 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGT-VPVGRVETGVLKPGMVVTFAPAG----VT-----GEVKSVEM----HHEPLEEALPGDNV 67 (91)
T ss_pred CCCeEEEEEEEEEeCCceE-EEEEEEecceeecCCEEEECCCC----cE-----EEEEEEEE----CCcCcCEECCCCEE
Confidence 4688898988887667787 89999999999999999987653 22 47877763 34678999999999
Q ss_pred EEE--ccCcccccce-EeccC
Q 007929 445 AMV--GLDQYITKNA-TLTNE 462 (584)
Q Consensus 445 av~--gl~~~~~~tg-Tl~~~ 462 (584)
++. +++....+.| .||++
T Consensus 68 ~i~l~~i~~~~v~~G~vl~~~ 88 (91)
T cd03693 68 GFNVKNVSKKDIKRGDVAGDS 88 (91)
T ss_pred EEEECCCCHHHcCCcCEEccC
Confidence 884 3322223556 55654
No 323
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.07 E-value=1.1e-05 Score=74.15 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=41.7
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D 153 (584)
.++.+.||||||.. ......++.||-+|+|+.+..+......+. .-...-=+++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~----~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA----GIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh----hHhhhcCEEEEeCCC
Confidence 47899999999964 444569999999999999885443333322 111223479999998
No 324
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.05 E-value=5.1e-05 Score=76.94 Aligned_cols=108 Identities=20% Similarity=0.167 Sum_probs=64.6
Q ss_pred cccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccce--ecceEEEEeecchhhhhcccccCCCCcee
Q 007929 14 GPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI--KSTGISLYYEMTDAALKSYRGERQGNEYL 91 (584)
Q Consensus 14 ~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (584)
|+ +|-+++|||||+.++-...- .+-|+.- +|+ ...++... . +..
T Consensus 163 GL-VG~PNaGKSTlls~vS~AkP----------KIadYpF------TTL~PnLGvV~~~-~----------------~~s 208 (369)
T COG0536 163 GL-VGLPNAGKSTLLSAVSAAKP----------KIADYPF------TTLVPNLGVVRVD-G----------------GES 208 (369)
T ss_pred cc-ccCCCCcHHHHHHHHhhcCC----------cccCCcc------ccccCcccEEEec-C----------------CCc
Confidence 44 99999999999999932211 1112211 233 33334331 1 567
Q ss_pred EEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCCCC----chhHHHHHHHHHh-----cCCceEEEEecCccc
Q 007929 92 INLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGV----CVQTETVLRQALG-----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 92 inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~g~----~~~t~~~l~~~~~-----~~~p~ivviNK~D~~ 155 (584)
|.+-|.||..+ +--+..+-+..|-..+.|||.+.-- ...-..++..+.+ ...|.++|+||||..
T Consensus 209 fv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 209 FVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred EEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 99999999754 1112233444567889999987543 2222333333333 267899999999965
No 325
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.01 E-value=1.2e-05 Score=69.61 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=41.0
Q ss_pred EeCCCC----CCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 94 LIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 94 liDTPG----~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
.||||| |..+.......+..+|..++|-.+.++-+.-.-..+. -...|.|-+++|.|+.
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~---~~~k~vIgvVTK~DLa 103 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLD---IGVKKVIGVVTKADLA 103 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCccccc---ccccceEEEEeccccc
Confidence 599999 4444455566667889999998888875444332222 2345678899999998
No 326
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.01 E-value=3.2e-05 Score=72.82 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=41.5
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHh------hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l------~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
..++.+.+|||||...+..+....+ ...|.+++|+|+..+.... ...+......+ ..-+++||+|..
T Consensus 80 ~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred hCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCC-CCEEEEECCcCC
Confidence 3467789999999864433333222 2389999999997543222 23333322334 244888999997
No 327
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=5.2e-05 Score=78.24 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=78.9
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.|++.+ +|..|.|||||+|+|+...-.-++ .+ +..+.+..+...+....+.+.- ++
T Consensus 21 ~ftlmv---vG~sGlGKsTfiNsLf~~~l~~~~------~~-~~~~~~~~~t~~i~~~~~~iee--------------~g 76 (366)
T KOG2655|consen 21 DFTLMV---VGESGLGKSTFINSLFLTDLSGNR------EV-PGASERIKETVEIESTKVEIEE--------------NG 76 (366)
T ss_pred ceEEEE---ecCCCccHHHHHHHHHhhhccCCc------cc-CCcccCccccceeeeeeeeecC--------------CC
Confidence 478888 999999999999999766211110 11 2222222223333333333321 23
Q ss_pred CceeEEEeCCCCCCCchHH--------------HHHHh-----------h--hcCeEEEEEeCC-CCCchhHHHHHHHHH
Q 007929 88 NEYLINLIDSPGHVDFSSE--------------VTAAL-----------R--ITDGALVVVDCI-EGVCVQTETVLRQAL 139 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e--------------~~~~l-----------~--~~D~ailvvda~-~g~~~~t~~~l~~~~ 139 (584)
-...+|+|||||..|+... -..++ . ..++|++.+.+. +|+.+......+. .
T Consensus 77 ~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~-l 155 (366)
T KOG2655|consen 77 VKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKK-L 155 (366)
T ss_pred eEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHH-H
Confidence 3567899999999875432 11111 1 467899999986 5788888877777 4
Q ss_pred hcCCceEEEEecCcccc
Q 007929 140 GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 140 ~~~~p~ivviNK~D~~~ 156 (584)
...+.+|-||-|.|...
T Consensus 156 ~~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 156 SKKVNLIPVIAKADTLT 172 (366)
T ss_pred hccccccceeeccccCC
Confidence 56777888999999874
No 328
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.97 E-value=7e-05 Score=67.70 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=53.2
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh--cC---Cce-EEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ER---IRP-VLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~--~~---~p~-ivviNK~D~~ 155 (584)
..++.+|||+|++.|.+-+.+..|.+=|+++|.|.+..-.....+.|-.-.+ .+ .++ .+|..|.|+.
T Consensus 57 riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 57 RIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 4678899999999999999999999999999999998777776667733222 22 223 3789999997
No 329
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.96 E-value=3e-05 Score=75.43 Aligned_cols=134 Identities=14% Similarity=0.093 Sum_probs=67.1
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCcccccc--CCCe-eeeCChhhHhhhccce---ecceEEEEeecchhhhhcc
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV--AGDV-RMTDTRQDEAERGITI---KSTGISLYYEMTDAALKSY 81 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~-~~~D~~~~E~~r~~Ti---~~~~~~~~~~~~~~~~~~~ 81 (584)
...|++ +|+.|+|||||+++|+...+...+.. .+.. .-.|....+ +.|..+ ...... ... ...+...
T Consensus 22 ~~~i~~---~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic-~~~--~~~~~~~ 94 (207)
T TIGR00073 22 LVVLNF---MSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKEC-HLD--AHMVAHA 94 (207)
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcc-cCC--hHHHHHH
Confidence 457777 99999999999999997744211100 1100 112222221 122211 111110 000 0001111
Q ss_pred cccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 82 ~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
.......+..+.||+|.|...... ......+..+.|+|+..+...... .....+.|.++++||+|+.
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~~~~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLK----YPGMFKEADLIVINKADLA 161 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhh----hHhHHhhCCEEEEEHHHcc
Confidence 111222245789999999321111 111234566789999877543322 1122356789999999997
No 330
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.96 E-value=3.5e-06 Score=73.22 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=57.1
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH----HHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~----~~~~~~~p~ivviNK~D~~ 155 (584)
++..++.+|||+|++.|.+-+-...|.+|..+++.|.........-+.|- ...+..+...++.||+|+.
T Consensus 44 ~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 44 DKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred CcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 45788999999999999999999999999999999998877666666662 2234566778999999996
No 331
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.95 E-value=0.00029 Score=75.80 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=41.9
Q ss_pred eeEEEeCCCCCCCchHHH------HHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEV------TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~------~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
+.+.||||||...+..+. ..++..+|.+++|+|+..|- ......+. ....+++- +++||+|..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~~a~~-F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKNQAKA-FHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHHHHHH-HHhcCCCCEEEEecccCC
Confidence 478999999976654332 23455689999999998872 22223222 22245554 889999986
No 332
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.94 E-value=9.8e-06 Score=79.74 Aligned_cols=140 Identities=21% Similarity=0.169 Sum_probs=70.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCcc---------c--cccCCCeeeeCChh---hHhhhccceecceEEEEee
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGII---------A--QEVAGDVRMTDTRQ---DEAERGITIKSTGISLYYE 72 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i---------~--~~~~g~~~~~D~~~---~E~~r~~Ti~~~~~~~~~~ 72 (584)
+.+.|+| .|++|+|||||+++|...-..- + ++-.|+.-.-|... .....++-|.+....-...
T Consensus 28 ~a~~iGi---TG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lG 104 (266)
T PF03308_consen 28 RAHVIGI---TGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLG 104 (266)
T ss_dssp -SEEEEE---EE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHH
T ss_pred CceEEEe---eCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCC
Confidence 4566777 9999999999999995433211 1 11223222223221 1122233333222111111
Q ss_pred cchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecC
Q 007929 73 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (584)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~ 152 (584)
+-.+...+...-+...++.+.||-|.|--. .|+. -...+|..++|+-+..|...|..+. ..+ .+.=++||||.
T Consensus 105 Gls~~t~~~v~ll~aaG~D~IiiETVGvGQ--sE~~-I~~~aD~~v~v~~Pg~GD~iQ~~Ka-Gim---EiaDi~vVNKa 177 (266)
T PF03308_consen 105 GLSRATRDAVRLLDAAGFDVIIIETVGVGQ--SEVD-IADMADTVVLVLVPGLGDEIQAIKA-GIM---EIADIFVVNKA 177 (266)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEEEESSST--HHHH-HHTTSSEEEEEEESSTCCCCCTB-T-THH---HH-SEEEEE--
T ss_pred CccHhHHHHHHHHHHcCCCEEEEeCCCCCc--cHHH-HHHhcCeEEEEecCCCccHHHHHhh-hhh---hhccEEEEeCC
Confidence 001111111122233389999999999654 2322 3678999999999999988876532 111 12348999999
Q ss_pred cccc
Q 007929 153 DRCF 156 (584)
Q Consensus 153 D~~~ 156 (584)
|+..
T Consensus 178 D~~g 181 (266)
T PF03308_consen 178 DRPG 181 (266)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 9874
No 333
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.93 E-value=2.9e-05 Score=80.35 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=29.0
Q ss_pred ceeEEEeCCCCCC----CchH---HHHHHhhhcCeEEEEEeCCC
Q 007929 89 EYLINLIDSPGHV----DFSS---EVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 89 ~~~inliDTPG~~----df~~---e~~~~l~~~D~ailvvda~~ 125 (584)
...+.+|||||.. .+.+ .....++.||++++|||+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4679999999983 3333 45567999999999999974
No 334
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.93 E-value=1e-05 Score=74.99 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=25.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAG 44 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g 44 (584)
..+.|++ +|.+|+|||||+|+|+..........+|
T Consensus 101 ~~~~v~~---~G~~nvGKStliN~l~~~~~~~~~~~~g 135 (157)
T cd01858 101 KQISVGF---IGYPNVGKSSIINTLRSKKVCKVAPIPG 135 (157)
T ss_pred cceEEEE---EeCCCCChHHHHHHHhcCCceeeCCCCC
Confidence 3567888 9999999999999998655444333333
No 335
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.93 E-value=3.1e-05 Score=82.55 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=29.0
Q ss_pred ceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCC
Q 007929 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 89 ~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (584)
...+.++||||..+ ........++.||++++|||+..
T Consensus 71 ~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 71 FIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 36689999999643 22356677999999999999974
No 336
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.93 E-value=6.4e-05 Score=70.82 Aligned_cols=63 Identities=22% Similarity=0.160 Sum_probs=50.1
Q ss_pred eEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccc
Q 007929 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (584)
Q Consensus 91 ~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~ 155 (584)
.+.||||||..+ .....++..+|.+|+|+++...-...+...++.+...+.+. .+++|++|..
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 789999999765 45778899999999999998776667777767665556664 4899999875
No 337
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.88 E-value=0.00019 Score=65.09 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=47.5
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~--~~p~ivviNK~D~~ 155 (584)
+.+.+||||+..+ .....++..+|.+++|+++...-...+...++.+.+. ..++.+++|+++..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 6789999999754 5567889999999999999765555556666555332 33456999999864
No 338
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00017 Score=73.47 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=55.8
Q ss_pred ceeEEEeCCCCC-----------CCchHHHHHHhhhcCeEEEEEeCCC-CCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGH-----------VDFSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~-----------~df~~e~~~~l~~~D~ailvvda~~-g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
-.+++||||||. -||.+-...-...||.+++++|+-. .+...+.+++.++....-++-||+||.|...
T Consensus 146 Le~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 146 LESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVD 225 (532)
T ss_pred hhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccC
Confidence 346999999996 3677767777789999999999964 6788899999887666667889999999884
No 339
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.88 E-value=7.5e-05 Score=79.72 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=41.5
Q ss_pred CceeEEEeCCCCCCCch----HHHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFS----SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~----~e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~ 155 (584)
.++.+.||||||..... .++....+ ..|-+++|+||..|-.. ....+.. ...++ --+++||+|..
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F-~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAF-KDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHH-HhccCCcEEEEECccCC
Confidence 46889999999976443 33333222 35789999999877433 2222222 22344 45899999987
No 340
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.86 E-value=0.00015 Score=69.72 Aligned_cols=124 Identities=20% Similarity=0.209 Sum_probs=71.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhc-cceecceEEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERG-ITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~-~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
-.|+|.+ +|.+|.|||||++.|... ....+. ..|.. .|.-++ +-+.+....+.-
T Consensus 45 F~FNIMV---VgqSglgkstlinTlf~s-~v~~~s------~~~~~-~~p~pkT~eik~~thvieE-------------- 99 (336)
T KOG1547|consen 45 FDFNIMV---VGQSGLGKSTLINTLFKS-HVSDSS------SSDNS-AEPIPKTTEIKSITHVIEE-------------- 99 (336)
T ss_pred CceEEEE---EecCCCCchhhHHHHHHH-HHhhcc------CCCcc-cCcccceEEEEeeeeeeee--------------
Confidence 3478888 999999999999999543 322221 11111 111111 222332222322
Q ss_pred CCCceeEEEeCCCCCCCchHH--------------HHHHh----------h----hcCeEEEEEeCCC-CCchhHHHHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSE--------------VTAAL----------R----ITDGALVVVDCIE-GVCVQTETVLR 136 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e--------------~~~~l----------~----~~D~ailvvda~~-g~~~~t~~~l~ 136 (584)
++...++|+|||||+.|++.. -...| + ...+|++.+.++- ...+-+.+.++
T Consensus 100 ~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflk 179 (336)
T KOG1547|consen 100 KGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLK 179 (336)
T ss_pred cceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHH
Confidence 233567999999998875421 11111 1 2457888888862 35566666666
Q ss_pred HHHhcCCceEEEEecCcccc
Q 007929 137 QALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 137 ~~~~~~~p~ivviNK~D~~~ 156 (584)
.+ ..-+-++-||-|.|-..
T Consensus 180 rL-t~vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 180 RL-TEVVNVVPVIAKADTLT 198 (336)
T ss_pred HH-hhhheeeeeEeeccccc
Confidence 53 33344666888999874
No 341
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.84 E-value=0.0001 Score=74.71 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=40.8
Q ss_pred CceeEEEeCCCCCCCchHHHHH-------Hhh-----hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCcc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTA-------ALR-----ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDR 154 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~-------~l~-----~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~ 154 (584)
+++.+.||||||.......... ... .+|..++|+|+..|-. +........ ..+++ -+++||+|-
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~-~~~~~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFN-EAVGLTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHH-hhCCCCEEEEEccCC
Confidence 4688999999998754333222 222 3899999999976532 222222212 22344 489999998
Q ss_pred c
Q 007929 155 C 155 (584)
Q Consensus 155 ~ 155 (584)
.
T Consensus 230 ~ 230 (272)
T TIGR00064 230 T 230 (272)
T ss_pred C
Confidence 7
No 342
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.84 E-value=8.7e-06 Score=75.23 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
.+++ +|++|+|||||+|+|+...
T Consensus 37 ~~vl---~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVL---LGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHTSS
T ss_pred EEEE---ECCCCCCHHHHHHHHHhhc
Confidence 4556 8999999999999997653
No 343
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.84 E-value=3.8e-05 Score=82.48 Aligned_cols=117 Identities=18% Similarity=0.146 Sum_probs=77.7
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
..+.++|++ +|.-|+|||||+-+|+...-.-.-+ +.++ -++|-....
T Consensus 6 t~kdVRIvl---iGD~G~GKtSLImSL~~eef~~~VP-----~rl~--------~i~IPadvt----------------- 52 (625)
T KOG1707|consen 6 TLKDVRIVL---IGDEGVGKTSLIMSLLEEEFVDAVP-----RRLP--------RILIPADVT----------------- 52 (625)
T ss_pred CccceEEEE---ECCCCccHHHHHHHHHhhhcccccc-----ccCC--------ccccCCccC-----------------
Confidence 357789999 9999999999999997654321100 0000 133322111
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCC-----CCchhHHHHHHHHH--hcCCceEEEEecCcccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----GVCVQTETVLRQAL--GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~-----g~~~~t~~~l~~~~--~~~~p~ivviNK~D~~~ 156 (584)
.......++||+-..+-......-++.||.+.+|.+..+ +++.-=..++++.. ..++|+|+|.||+|...
T Consensus 53 --Pe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 53 --PENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred --cCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 113448899999887766777889999999999987655 33333234445422 14789999999999874
No 344
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.82 E-value=9.6e-05 Score=76.52 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=41.0
Q ss_pred CCceeEEEeCCCCCCCch----HHHHHHhh--------hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCc
Q 007929 87 GNEYLINLIDSPGHVDFS----SEVTAALR--------ITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMD 153 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~----~e~~~~l~--------~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D 153 (584)
..++.+.||||||...+. .+.....+ ..+..++|+||+.|-.... .. +... ..++ --+++||+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a-~~f~-~~~~~~giIlTKlD 270 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QA-KAFH-EAVGLTGIILTKLD 270 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HH-HHHH-hhCCCCEEEEECCC
Confidence 347899999999976533 33333333 3567899999997643222 11 2211 2233 349999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
..
T Consensus 271 ~t 272 (318)
T PRK10416 271 GT 272 (318)
T ss_pred CC
Confidence 76
No 345
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.80 E-value=4.8e-05 Score=72.78 Aligned_cols=114 Identities=19% Similarity=0.176 Sum_probs=77.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
-+|.+ +|..|||||++-..+...-..-+ -...|-||+....++.|-+
T Consensus 5 kKvlL---MGrsGsGKsSmrsiiF~ny~a~D---------------~~rlg~tidveHsh~RflG--------------- 51 (295)
T KOG3886|consen 5 KKVLL---MGRSGSGKSSMRSIIFANYIARD---------------TRRLGATIDVEHSHVRFLG--------------- 51 (295)
T ss_pred ceEEE---eccCCCCccccchhhhhhhhhhh---------------hhccCCcceeeehhhhhhh---------------
Confidence 46777 99999999998777652211111 1223567887777777763
Q ss_pred ceeEEEeCCCCCCCchHHHHH-----HhhhcCeEEEEEeCCCCCchhHH----HHHHHHHhc--CCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTA-----ALRITDGALVVVDCIEGVCVQTE----TVLRQALGE--RIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~-----~l~~~D~ailvvda~~g~~~~t~----~~l~~~~~~--~~p~ivviNK~D~~ 155 (584)
+..+|+||+-|+..|+..-.+ .++..+..+.|+|+...-...+. ..++..++. ..++.+++.|||+.
T Consensus 52 nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 52 NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred hheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 578999999999987765443 56788999999999765333333 333443333 33456889999998
No 346
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.80 E-value=7.9e-05 Score=69.24 Aligned_cols=63 Identities=19% Similarity=0.138 Sum_probs=38.4
Q ss_pred ceeEEEeCCCCCCCchHH--------HHHHhhhcCeEEEEEeCCCCCchh--HHHHHHHHHhcCCceEEEEecCcc
Q 007929 89 EYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQ--TETVLRQALGERIRPVLTVNKMDR 154 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e--------~~~~l~~~D~ailvvda~~g~~~~--t~~~l~~~~~~~~p~ivviNK~D~ 154 (584)
...+.+|||||..+-..- ...+.-.+|.++.+||+....... ......|+... =++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 567789999998752221 122344688999999987543221 11222333222 3789999996
No 347
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.79 E-value=4.9e-05 Score=80.22 Aligned_cols=119 Identities=22% Similarity=0.236 Sum_probs=70.7
Q ss_pred CccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhcccee-cceEEEEeecchhhhhc
Q 007929 2 SSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKS 80 (584)
Q Consensus 2 ~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~-~~~~~~~~~~~~~~~~~ 80 (584)
.++...+...++ +|-+|+||||+.+.+... ..+-+..-+|.. .-+.++.++
T Consensus 162 PsIDp~trTlll---cG~PNVGKSSf~~~vtra-----------------dvevqpYaFTTksL~vGH~dyk-------- 213 (620)
T KOG1490|consen 162 PAIDPNTRTLLV---CGYPNVGKSSFNNKVTRA-----------------DDEVQPYAFTTKLLLVGHLDYK-------- 213 (620)
T ss_pred CCCCCCcCeEEE---ecCCCCCcHhhccccccc-----------------ccccCCcccccchhhhhhhhhh--------
Confidence 345556777888 999999999988777211 011111123332 233345555
Q ss_pred ccccCCCCceeEEEeCCCCCCCc--------hHHHHHHhhhcC-eEEEEEeCCC--CCchhHHH-HHHHH--HhcCCceE
Q 007929 81 YRGERQGNEYLINLIDSPGHVDF--------SSEVTAALRITD-GALVVVDCIE--GVCVQTET-VLRQA--LGERIRPV 146 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~df--------~~e~~~~l~~~D-~ailvvda~~--g~~~~t~~-~l~~~--~~~~~p~i 146 (584)
-..|.+|||||.-|= ....+.||...- +++++.|-++ |-+....- ++..+ +-.+.|.|
T Consensus 214 --------YlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~I 285 (620)
T KOG1490|consen 214 --------YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTI 285 (620)
T ss_pred --------eeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceE
Confidence 577999999997552 122345555443 4677777764 44333322 22222 22478999
Q ss_pred EEEecCcccc
Q 007929 147 LTVNKMDRCF 156 (584)
Q Consensus 147 vviNK~D~~~ 156 (584)
+|+||+|...
T Consensus 286 lvlNK~D~m~ 295 (620)
T KOG1490|consen 286 LVLNKIDAMR 295 (620)
T ss_pred EEeecccccC
Confidence 9999999874
No 348
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=3.3e-05 Score=68.33 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=52.0
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH--HHHHHHh---cCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~--~l~~~~~---~~~p~ivviNK~D~~~ 156 (584)
+.++++||.-|........+......|.+|+|||..+-.+..+.. +...+.+ .+-..++|.||+|...
T Consensus 61 NLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~ 133 (182)
T KOG0072|consen 61 NLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG 133 (182)
T ss_pred cccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh
Confidence 789999999999999999999999999999999998765443332 2222211 1345668999999985
No 349
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00021 Score=78.27 Aligned_cols=137 Identities=20% Similarity=0.192 Sum_probs=84.4
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCcccccc------------CCC--eeeeCChhhHhhhcc-----------
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV------------AGD--VRMTDTRQDEAERGI----------- 60 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~------------~g~--~~~~D~~~~E~~r~~----------- 60 (584)
.++.+|+| .|..++||||++|+||...-.-...+ .|. .-.+|-. +|..--.
T Consensus 107 r~~mKV~i---fGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s-~ek~d~~ti~~~~haL~~ 182 (749)
T KOG0448|consen 107 RRHMKVAI---FGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGS-EEKIDMKTINQLAHALKP 182 (749)
T ss_pred hcccEEEE---eCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCC-cccccHHHHhHHHHhcCc
Confidence 47789999 99999999999999987764433221 111 1111110 0110000
Q ss_pred ---ceecceEEEEeecchhhhhcccccCCCCceeEEEeCCCCC---CCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHH
Q 007929 61 ---TIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGH---VDFSSEVTAALRITDGALVVVDCIEGVCVQTETV 134 (584)
Q Consensus 61 ---Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDTPG~---~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~ 134 (584)
.-..+.+.+.|......+ - .-.+.+||.||. ..+..++..-...+|..|+|+.|..-..-.....
T Consensus 183 ~~~~~~~sLlrV~~p~~~csL-------L--rnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~F 253 (749)
T KOG0448|consen 183 DKDLGAGSLLRVFWPDDKCSL-------L--RNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQF 253 (749)
T ss_pred ccccCcceEEEEEecCccchh-------h--hccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHH
Confidence 111234455555221000 0 126889999996 4577788888889999999999977655444455
Q ss_pred HHHHHhcCCceE-EEEecCcccc
Q 007929 135 LRQALGERIRPV-LTVNKMDRCF 156 (584)
Q Consensus 135 l~~~~~~~~p~i-vviNK~D~~~ 156 (584)
+..+.+. +|-| ++.||+|...
T Consensus 254 f~~vs~~-KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 254 FHKVSEE-KPNIFILNNKWDASA 275 (749)
T ss_pred HHHhhcc-CCcEEEEechhhhhc
Confidence 5665444 7744 7789999873
No 350
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.75 E-value=0.00013 Score=70.48 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=37.4
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce--EEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP--VLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~--ivviNK~D~~ 155 (584)
+....+|+|-|-. ...... -..+|.+|+|+|+.++...+.. ...++.. ++++||+|+.
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~ 150 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLA 150 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhcc
Confidence 4567899999932 111111 2236899999999988764321 1123444 8999999997
No 351
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.75 E-value=8.7e-05 Score=73.41 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=47.8
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH------hcCCceEEEEecCc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL------GERIRPVLTVNKMD 153 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~------~~~~p~ivviNK~D 153 (584)
..+.+.||||||+.+ ..+..++..||.+|+++.+..-....+.+.+..+. ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999876 66788999999999999887654444444443322 33667779999987
No 352
>PRK14974 cell division protein FtsY; Provisional
Probab=97.73 E-value=0.00014 Score=75.74 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=40.2
Q ss_pred CceeEEEeCCCCCCCc----hHHHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df----~~e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~ 155 (584)
.++.+.||||||.... +.+...-.+ ..|..++|+|+..|- ......+...+ .++ --+++||+|..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~-~~~~~giIlTKlD~~ 292 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNE-AVGIDGVILTKVDAD 292 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHh-cCCCCEEEEeeecCC
Confidence 3577999999998643 333322222 468899999998763 22222222111 233 34899999997
No 353
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.72 E-value=3.9e-05 Score=72.33 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.0
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.+.|++ +|.+|+|||||+++|+....
T Consensus 117 ~~~~~~---vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 117 SITVGV---VGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred CcEEEE---EcCCCCCHHHHHHHHhCccc
Confidence 368888 99999999999999975443
No 354
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.71 E-value=3e-05 Score=73.66 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=71.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++++| +|.+.+|||.|+-.+ .++....... .++.|+. .+.+... .
T Consensus 3 ~~~K~Vv---VGDga~GKT~ll~~~--t~~~fp~~yv--PTVFdny-------------s~~v~V~-------------d 49 (198)
T KOG0393|consen 3 RRIKCVV---VGDGAVGKTCLLISY--TTNAFPEEYV--PTVFDNY-------------SANVTVD-------------D 49 (198)
T ss_pred eeeEEEE---ECCCCcCceEEEEEe--ccCcCccccc--CeEEccc-------------eEEEEec-------------C
Confidence 4578888 999999999998766 2221111111 1222221 1111110 1
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHH-HHHH--hcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l-~~~~--~~~~p~ivviNK~D~~ 155 (584)
++...+.+|||+|++||..-.--+...+|..+++++....-..... .-| ..+. ..++|+|+|.+|.|+-
T Consensus 50 g~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 50 GKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred CCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 4467799999999999976433566789999998887654333321 222 2222 2478999999999986
No 355
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.71 E-value=8.2e-05 Score=71.65 Aligned_cols=139 Identities=18% Similarity=0.099 Sum_probs=69.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCCh---hhHhhhccceecceEEEEeec--ch-hhhhcccc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR---QDEAERGITIKSTGISLYYEM--TD-AALKSYRG 83 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~---~~E~~r~~Ti~~~~~~~~~~~--~~-~~~~~~~~ 83 (584)
.|++ +|+.|+||||.+-.|........+. - .-...|.. ..||-+...-....-.+.... +. ..+.+...
T Consensus 3 vi~l---vGptGvGKTTt~aKLAa~~~~~~~~-v-~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 3 VIAL---VGPTGVGKTTTIAKLAARLKLKGKK-V-ALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHHHHHTT---E-EEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred EEEE---ECCCCCchHhHHHHHHHHHhhcccc-c-eeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3566 9999999999999986544322111 0 11223432 223332222222211111110 00 11111122
Q ss_pred cCCCCceeEEEeCCCCCCCchHH----HHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 84 ERQGNEYLINLIDSPGHVDFSSE----VTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 84 ~~~~~~~~inliDTPG~~df~~e----~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
....+++.+.||||||......+ +..-++ ..+-+++|+|+..+-.... .........++ -=++++|+|..
T Consensus 78 ~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~-~~lIlTKlDet 153 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGI-DGLILTKLDET 153 (196)
T ss_dssp HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSST-CEEEEESTTSS
T ss_pred HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccC-ceEEEEeecCC
Confidence 22234578999999998765433 322222 4577899999987743222 33333222232 34779999997
No 356
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00024 Score=71.06 Aligned_cols=154 Identities=19% Similarity=0.162 Sum_probs=82.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHH---HcCc------cc--cccCCCeeeeCChhhHh---hhccceecceEEEEe
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVA---AAGI------IA--QEVAGDVRMTDTRQDEA---ERGITIKSTGISLYY 71 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~---~~g~------i~--~~~~g~~~~~D~~~~E~---~r~~Ti~~~~~~~~~ 71 (584)
.+-..|.| .|.+|+|||||++.|.. ..|. ++ ++-.|++-.-|...... ..++-+.+....-..
T Consensus 49 G~a~viGI---TG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 49 GNAHVIGI---TGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred CCCcEEEe---cCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 34456766 99999999999999843 3332 11 11233333333322211 112222221111101
Q ss_pred ecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHH-HhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEe
Q 007929 72 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTA-ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVN 150 (584)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~-~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviN 150 (584)
.+-+....+...-+..-+|.+.||-|-|--. ... -...+|..++|.=+..|...|..+. .. ..+-=|+|||
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQ----sev~I~~~aDt~~~v~~pg~GD~~Q~iK~-Gi---mEiaDi~vIN 197 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQ----SEVDIANMADTFLVVMIPGAGDDLQGIKA-GI---MEIADIIVIN 197 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCc----chhHHhhhcceEEEEecCCCCcHHHHHHh-hh---hhhhheeeEe
Confidence 1000111111222344489999999999643 222 2467899999998888988887643 11 1223389999
Q ss_pred cCccccccccCCHHHHHHHHHHHHHH
Q 007929 151 KMDRCFLELQVDGEEAYQTFQKVIEN 176 (584)
Q Consensus 151 K~D~~~~~~~~~~~~~~~~~~~~l~~ 176 (584)
|.|+.. .+..+..+...+..
T Consensus 198 KaD~~~------A~~a~r~l~~al~~ 217 (323)
T COG1703 198 KADRKG------AEKAARELRSALDL 217 (323)
T ss_pred ccChhh------HHHHHHHHHHHHHh
Confidence 999874 34444445544443
No 357
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00019 Score=75.28 Aligned_cols=137 Identities=13% Similarity=0.048 Sum_probs=68.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCcccccc-CCCeeeeCCh---hhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV-AGDVRMTDTR---QDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~-~g~~~~~D~~---~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
..|++ +|+.|+||||++..|..... ..+ .......|.. ..|+-+...-... +++....+...+.+....
T Consensus 242 ~vI~L---VGptGvGKTTTiaKLA~~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lg-ipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 242 QTIAL---IGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIG-FEVIAVRDEAAMTRALTY 314 (436)
T ss_pred cEEEE---ECCCCCcHHHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcC-CcEEecCCHHHHHHHHHH
Confidence 46778 99999999999999954321 111 0001112221 2222221100011 111111111112221111
Q ss_pred -CCCCceeEEEeCCCCCCCc----hHHHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 85 -RQGNEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 85 -~~~~~~~inliDTPG~~df----~~e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
....++.+.||||||.... +.+....++ ..|.++||+||+.+-. ....+++... .+++= ++++|+|-.
T Consensus 315 lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~--~~~idglI~TKLDET 390 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFK--DIHIDGIVFTKFDET 390 (436)
T ss_pred HHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhc--CCCCCEEEEEcccCC
Confidence 1223578999999998553 333434333 3467899999864422 2223333322 24433 899999997
No 358
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.69 E-value=5.4e-05 Score=70.01 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.6
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+...+++ +|++|+|||||+++|+....
T Consensus 99 ~~~~~~~---~G~~~~GKstlin~l~~~~~ 125 (155)
T cd01849 99 KSITVGV---IGYPNVGKSSVINALLNKLK 125 (155)
T ss_pred cCcEEEE---EccCCCCHHHHHHHHHcccc
Confidence 4567888 99999999999999976544
No 359
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.66 E-value=0.00014 Score=68.16 Aligned_cols=66 Identities=18% Similarity=0.052 Sum_probs=52.7
Q ss_pred CceeEEEeCCCCCCCchHHHHHHh--hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l--~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.++.+.|+|||+... ......+ ..+|.+++|+.+...-...+.+.++.+.+.+.+++ +++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 478899999999853 3444444 68999999999887777778888888888888876 889999864
No 360
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.64 E-value=6.5e-05 Score=68.34 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
++++ +|.+|+|||||+++|+...
T Consensus 85 ~~~~---~G~~~vGKstlin~l~~~~ 107 (141)
T cd01857 85 TIGL---VGYPNVGKSSLINALVGKK 107 (141)
T ss_pred EEEE---ECCCCCCHHHHHHHHhCCC
Confidence 6778 9999999999999997543
No 361
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.62 E-value=0.00027 Score=61.01 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=44.8
Q ss_pred eEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC----ceEEEEec
Q 007929 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI----RPVLTVNK 151 (584)
Q Consensus 91 ~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~----p~ivviNK 151 (584)
.+.+||||+..+ .....++..||.+++|+++...-...+.+.++.+.+.+. ++.+++|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 688999999875 456778999999999999987766666666666555443 34488885
No 362
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.60 E-value=0.00041 Score=56.86 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=48.6
Q ss_pred CeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE
Q 007929 367 PLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (584)
Q Consensus 367 pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav 446 (584)
||...|...+.. .|. +..+||.+|++++||+|++.+.+ .. .+|.+|.. ...++++|.|||.+++
T Consensus 1 plr~~I~~v~~~--~g~-vv~G~v~~G~i~~G~~v~i~P~~----~~-----~~V~si~~----~~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKD--MGT-VVLGKVESGTIKKGDKLLVMPNK----TQ-----VEVLSIYN----EDVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEc--CCE-EEEEEEeeeEEecCCEEEEeCCC----cE-----EEEEEEEE----CCEECCEECCCCEEEE
Confidence 455666665543 276 89999999999999999987643 22 46777763 2478999999999998
Q ss_pred E
Q 007929 447 V 447 (584)
Q Consensus 447 ~ 447 (584)
.
T Consensus 65 ~ 65 (82)
T cd04089 65 R 65 (82)
T ss_pred E
Confidence 3
No 363
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=9.9e-05 Score=66.32 Aligned_cols=67 Identities=27% Similarity=0.176 Sum_probs=50.7
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCceEEEEecCcccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~----~~~~~p~ivviNK~D~~~ 156 (584)
.++.+|||+|++.|.+.+-.-.|.|=|.++++|-+..-..-..+-| .|+ .-++.-++++.||.|++.
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 4567899999999999999999999999999999876544444444 222 122434779999999983
No 364
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.58 E-value=0.00022 Score=76.49 Aligned_cols=66 Identities=23% Similarity=0.420 Sum_probs=40.8
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHh------hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l------~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
..++.+.||||||...........+ ...|.+++|+|+..| .......+. ....+++- +++||+|..
T Consensus 180 ~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~-f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKT-FNERLGLTGVVLTKLDGD 252 (428)
T ss_pred hcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHH-HHhhCCCCEEEEeCccCc
Confidence 3468899999999654333322222 247889999999755 222222222 22345554 889999965
No 365
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.57 E-value=0.00037 Score=62.60 Aligned_cols=121 Identities=20% Similarity=0.234 Sum_probs=81.6
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|.+ +|....|||||.-...+... | ..-++..|+-..-..+++.-
T Consensus 20 slkv~l---lGD~qiGKTs~mvkYV~~~~-------------d-e~~~q~~GvN~mdkt~~i~~---------------- 66 (205)
T KOG1673|consen 20 SLKVGL---LGDAQIGKTSLMVKYVQNEY-------------D-EEYTQTLGVNFMDKTVSIRG---------------- 66 (205)
T ss_pred EEEEEe---ecccccCceeeehhhhcchh-------------H-HHHHHHhCccceeeEEEecc----------------
Confidence 456666 99999999999877643211 1 11123333322222222221
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHhcCCc--eEEEEecCccccccccCCHH
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGERIR--PVLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~~~~p--~ivviNK~D~~~~~~~~~~~ 164 (584)
..-.+.+||.-|.++|..+.--|...+-++++++|-+..-......-| +|+...+.- +|++.+|.|... +++|+
T Consensus 67 t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi---~lp~e 143 (205)
T KOG1673|consen 67 TDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFI---DLPPE 143 (205)
T ss_pred eEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhh---cCCHH
Confidence 256688999999999998887777777888999999876666666556 666655543 679999999985 66774
No 366
>PRK10867 signal recognition particle protein; Provisional
Probab=97.55 E-value=0.00029 Score=75.72 Aligned_cols=67 Identities=22% Similarity=0.363 Sum_probs=40.1
Q ss_pred CCCceeEEEeCCCCCCCchH----HHHHHh--hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSS----EVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~----e~~~~l--~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
...++.+.||||||...... +..... ...|.+++|+|+..| .......+.. ...+++- +++||+|-.
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F-~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAF-NEALGLTGVILTKLDGD 253 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHH-HhhCCCCEEEEeCccCc
Confidence 34478899999999653322 222211 246788999998754 1222222222 2345544 889999975
No 367
>PRK12288 GTPase RsgA; Reviewed
Probab=97.52 E-value=6.7e-05 Score=78.59 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEecccccCCCCChhHHHHHHHHHcCc
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAAAGI 37 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~~g~ 37 (584)
+++ +|.+|+|||||+|+|+.....
T Consensus 208 ~~~---vG~sgVGKSTLiN~Ll~~~~~ 231 (347)
T PRK12288 208 SIF---VGQSGVGKSSLINALLPEAEI 231 (347)
T ss_pred EEE---ECCCCCCHHHHHHHhccccce
Confidence 567 999999999999999865443
No 368
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.52 E-value=0.00011 Score=70.39 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHc
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
..+++ +|.+|+|||||+|+|+...
T Consensus 128 ~~~~~---~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYV---VGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEE---EcCCCCCHHHHHHHHHHhc
Confidence 46788 9999999999999998654
No 369
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00096 Score=72.62 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=38.1
Q ss_pred ceeEEEeCCCCCCCchHHHHH---Hhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTA---ALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~---~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+.||||||.......... .++ .....++|+++..+..... .+++.... ..+--+++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~-~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAH-AKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHh-hCCeEEEEecCcCc
Confidence 578999999997543322111 111 1235688889876533322 23333222 23455999999997
No 370
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.49 E-value=0.00015 Score=73.80 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.8
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
+.++|++ +|.+|+|||||+++|...
T Consensus 117 ~~~~~~~---vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 117 RPIRAMI---VGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHhCC
Confidence 4578888 999999999999999754
No 371
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.44 E-value=0.00018 Score=67.98 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=75.2
Q ss_pred ccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc--------eEEEEeecch----------hhh
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--------GISLYYEMTD----------AAL 78 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~--------~~~~~~~~~~----------~~~ 78 (584)
+|+.||||||.+.++..+.-.+.|...- .-+|-..+--+...|++.. .--+.+..+. ..+
T Consensus 9 ~GpAgSGKSTyC~~~~~h~e~~gRs~~v--VNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~Nl 86 (273)
T KOG1534|consen 9 MGPAGSGKSTYCSSMYEHCETVGRSVHV--VNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLENL 86 (273)
T ss_pred EccCCCCcchHHHHHHHHHHhhCceeEE--eecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHHHHH
Confidence 8999999999999998776665554211 0111111111111222111 1111111111 111
Q ss_pred hcccccCCCCceeEEEeCCCCCCC------chHHHHHHhhhcC---eEEEEEeCCCCC-----chhHHHHHHHHHhcCCc
Q 007929 79 KSYRGERQGNEYLINLIDSPGHVD------FSSEVTAALRITD---GALVVVDCIEGV-----CVQTETVLRQALGERIR 144 (584)
Q Consensus 79 ~~~~~~~~~~~~~inliDTPG~~d------f~~e~~~~l~~~D---~ailvvda~~g~-----~~~t~~~l~~~~~~~~p 144 (584)
..+.....+-.-.+.++||||+.+ ......+.+..-+ ++++++|+.--+ -+.....+..+....+|
T Consensus 87 dwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P 166 (273)
T KOG1534|consen 87 DWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVP 166 (273)
T ss_pred HHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 222233333355678999999655 4566677776644 578888874221 11222333445677899
Q ss_pred eEEEEecCcccc
Q 007929 145 PVLTVNKMDRCF 156 (584)
Q Consensus 145 ~ivviNK~D~~~ 156 (584)
.|=++.|||+..
T Consensus 167 ~INvlsKMDLlk 178 (273)
T KOG1534|consen 167 HINVLSKMDLLK 178 (273)
T ss_pred chhhhhHHHHhh
Confidence 999999999983
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.43 E-value=0.00018 Score=73.61 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
+.++|++ +|.+|+|||||+|+|....
T Consensus 120 ~~~~~~~---~G~pnvGKSsliN~l~~~~ 145 (287)
T PRK09563 120 RAIRAMI---IGIPNVGKSTLINRLAGKK 145 (287)
T ss_pred CceEEEE---ECCCCCCHHHHHHHHhcCC
Confidence 4578888 9999999999999997543
No 373
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.42 E-value=0.00074 Score=55.99 Aligned_cols=64 Identities=20% Similarity=0.377 Sum_probs=45.9
Q ss_pred EEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 372 VSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 372 VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
|...+.-+..|. +..+||.+|+++.||.|.+++.+. ..+ .+|.+|. ....++++|.|||.|++.
T Consensus 5 V~~v~~~~g~G~-vv~G~v~~G~v~~gd~v~~~p~~~--~~~-----~~V~si~----~~~~~~~~a~~G~~v~l~ 68 (87)
T cd03697 5 IEDVFSIPGRGT-VVTGRIERGTIKVGDEVEIVGFGE--TLK-----TTVTGIE----MFRKTLDEAEAGDNVGVL 68 (87)
T ss_pred EEEEEeCCCcEE-EEEEEECCCCCccCCEEEEeCCCC--Cce-----EEEEEEE----ECCcCCCEECCCCEEEEE
Confidence 333333345676 899999999999999999876421 112 3677766 335679999999999884
No 374
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.41 E-value=0.00096 Score=55.32 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=44.2
Q ss_pred cCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 378 ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 378 ~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
.+..|. +..+||.+|++++||.+++++.+. +. ....+|.+|. ....++++|.|||.+++.
T Consensus 11 v~g~Gt-Vv~G~v~~G~v~~g~~v~~~P~~~--g~---~~~~~V~sI~----~~~~~~~~a~aGd~v~l~ 70 (87)
T cd03694 11 VPGVGT-VVGGTVSKGVIRLGDTLLLGPDQD--GS---FRPVTVKSIH----RNRSPVRVVRAGQSASLA 70 (87)
T ss_pred cCCcce-EEEEEEecCEEeCCCEEEECCCCC--CC---EeEEEEEEEE----ECCeECCEECCCCEEEEE
Confidence 346687 899999999999999999875421 10 0114677766 335789999999999883
No 375
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.36 E-value=0.00063 Score=61.82 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=43.4
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCceEEEEecCccc
Q 007929 105 SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (584)
Q Consensus 105 ~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~--~~p~ivviNK~D~~ 155 (584)
+++..++..+|++++|+|+.++...+...+.+.+... ++|+++++||+|+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 5788999999999999999998877776676665554 78999999999986
No 376
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.35 E-value=0.00019 Score=71.69 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=19.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.+++ +|++|+|||||+|+|+....
T Consensus 122 ~~~~---~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 122 ISVF---AGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred EEEE---ECCCCCCHHHHHHHHhhhhh
Confidence 4556 89999999999999986543
No 377
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.34 E-value=0.00062 Score=67.06 Aligned_cols=90 Identities=19% Similarity=0.089 Sum_probs=51.6
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
....|+| +|+.++|||||+|+|+...... .+.+.. ...|...-.....+. .
T Consensus 6 ~v~vvsv---~G~~~sGKS~llN~l~~~~~~f--------~~~~~~-----~~~T~gi~~~~~~~~-------------~ 56 (224)
T cd01851 6 PVAVVSV---FGPQSSGKSFLLNHLFGTLSGF--------DVMDTS-----QQTTKGIWMWSVPFK-------------L 56 (224)
T ss_pred CEEEEEE---ECCCCCCHHHHHHHHhCCCCCe--------EecCCC-----CCCccceEEEecccc-------------C
Confidence 3456777 9999999999999997652110 000000 012221111111111 0
Q ss_pred CCceeEEEeCCCCCCCc------hHHHHHHhhh--cCeEEEEEeCCC
Q 007929 87 GNEYLINLIDSPGHVDF------SSEVTAALRI--TDGALVVVDCIE 125 (584)
Q Consensus 87 ~~~~~inliDTPG~~df------~~e~~~~l~~--~D~ailvvda~~ 125 (584)
..+..+.++||||..+- ......++.. +|..|+.++...
T Consensus 57 ~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 57 GKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 12578999999997653 2223555555 999888888753
No 378
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.33 E-value=0.00099 Score=54.68 Aligned_cols=63 Identities=27% Similarity=0.449 Sum_probs=46.5
Q ss_pred EEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 371 YVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 371 ~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
.|...+..+..|. +..+||.+|++++|+++.+++.+ .. .+|.+|.. ...++++|.|||-+++.
T Consensus 4 ~i~~~~~~~~~g~-vv~G~v~sG~i~~g~~v~~~p~~----~~-----~~V~sI~~----~~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 4 PIDRVFTVKGQGT-VVTGTVLSGSVKVGDKVEILPLG----EE-----TRVRSIQV----HGKDVEEAKAGDRVALN 66 (83)
T ss_pred EEEEEEEcCCcEE-EEEEEEeecEEeCCCEEEECCCC----ce-----EEEEEEEE----CCcCcCEEcCCCEEEEE
Confidence 3444443445576 89999999999999999987643 11 46777762 35778999999999883
No 379
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.33 E-value=0.00029 Score=66.30 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.2
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHc
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
.+++++ +|.+|+|||||+++|+...
T Consensus 115 ~~~~~~---~G~~~vGKstlin~l~~~~ 139 (171)
T cd01856 115 GIRAMV---VGIPNVGKSTLINRLRGKK 139 (171)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHhCCC
Confidence 367888 9999999999999997543
No 380
>PHA02518 ParA-like protein; Provisional
Probab=97.29 E-value=0.001 Score=64.40 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=44.4
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH---HHHH--hcCCceE-EEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL---RQAL--GERIRPV-LTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l---~~~~--~~~~p~i-vviNK~D~~ 155 (584)
..+.+.||||||..+ ..+..++..||.+|+++.+..--.....+++ +... ..+.+.+ ++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 368899999999754 5678899999999999998764333333333 3321 2245554 667776543
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=97.28 E-value=0.00018 Score=75.35 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.1
Q ss_pred EEecccccCCCCChhHHHHHHHHHcCc
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAAAGI 37 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~~g~ 37 (584)
+++ +|++|+|||||+|+|+.....
T Consensus 175 ~v~---iG~SgVGKSSLIN~L~~~~~~ 198 (352)
T PRK12289 175 TVV---AGPSGVGKSSLINRLIPDVEL 198 (352)
T ss_pred EEE---EeCCCCCHHHHHHHHcCcccc
Confidence 567 999999999999999865443
No 382
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.28 E-value=0.00025 Score=71.59 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.8
Q ss_pred ccCCCCChhHHHHHHHH
Q 007929 17 ANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~ 33 (584)
+|++|+|||||+|+|+.
T Consensus 170 ~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 170 LGQSGVGKSTLINALLP 186 (301)
T ss_pred ECCCCCcHHHHHHhhCc
Confidence 79999999999999964
No 383
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.27 E-value=0.00029 Score=73.16 Aligned_cols=57 Identities=30% Similarity=0.328 Sum_probs=42.4
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.+.|.+ +|-+|+|||||+|+|+....+.+...+| +|-....+.+
T Consensus 132 ~~~v~v---vG~PNVGKSslIN~L~~k~~~~~s~~PG---------------~Tk~~q~i~~------------------ 175 (322)
T COG1161 132 KIRVGV---VGYPNVGKSTLINRLLGKKVAKTSNRPG---------------TTKGIQWIKL------------------ 175 (322)
T ss_pred ceEEEE---EcCCCCcHHHHHHHHhcccceeeCCCCc---------------eecceEEEEc------------------
Confidence 467888 9999999999999998877765555454 4554444433
Q ss_pred CceeEEEeCCCCCC
Q 007929 88 NEYLINLIDSPGHV 101 (584)
Q Consensus 88 ~~~~inliDTPG~~ 101 (584)
+..+.++||||..
T Consensus 176 -~~~i~LlDtPGii 188 (322)
T COG1161 176 -DDGIYLLDTPGII 188 (322)
T ss_pred -CCCeEEecCCCcC
Confidence 3458999999964
No 384
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.26 E-value=0.0015 Score=55.88 Aligned_cols=88 Identities=19% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCCCeEEEEEeeeecC--------CCCceeEEEEeEeeeeecCcEEEEcCCCCCC--CCccc-cceeeeceEEEEecCCc
Q 007929 364 PEGPLMLYVSKMIPAS--------DKGRFFAFGRVFSGKVATGLKVRIMGPNYVP--GEKKD-LYVKSVQRTVIWMGKKQ 432 (584)
Q Consensus 364 ~~~pl~~~VfK~~~~~--------~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~--~~~e~-~~~~ki~~l~~~~g~~~ 432 (584)
.+.|+.++|.+.|.-. -.|. ++-++|.+|+|+.||+|.+...-... ++... -...+|..|+ ...
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~Gg-VigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~----~~~ 76 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGG-VAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLK----AEN 76 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceee-EEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEE----ecC
Confidence 3567777777777544 4466 89999999999999999876321111 10000 0123455555 556
Q ss_pred cccCcccCCCEEEE-EccCcccccc
Q 007929 433 ETVEDVPCGNTVAM-VGLDQYITKN 456 (584)
Q Consensus 433 ~~v~ea~AGdIvav-~gl~~~~~~t 456 (584)
..+++|.||+.++| ++|+..+++.
T Consensus 77 ~~l~~a~pGgliGvgT~Ldpsltk~ 101 (113)
T cd03688 77 NDLQEAVPGGLIGVGTKLDPTLTKA 101 (113)
T ss_pred ccccEEeCCCeEEEccccCcccccc
Confidence 78999999999998 5666654443
No 385
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.23 E-value=0.0017 Score=55.37 Aligned_cols=45 Identities=24% Similarity=0.163 Sum_probs=33.2
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR 136 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~ 136 (584)
+.+.+||||+..+ .....++..+|.+++++++...-.....+.++
T Consensus 40 ~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 5688999999865 45568999999999999986544444444443
No 386
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.19 E-value=0.00083 Score=63.30 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=63.6
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCcccccc--CCCeeeeCChhhHhhh--cc---ceecc-eEEEEeecchhhhhc
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAER--GI---TIKST-GISLYYEMTDAALKS 80 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~r--~~---Ti~~~-~~~~~~~~~~~~~~~ 80 (584)
+.|.+ .|++|||||||+++++..-+.--+.. .| -.+++.+.+...+ |. .+.+. ..+..-......+.+
T Consensus 14 ~~i~v---~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~-Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 14 LRIGV---GGPPGSGKTALIEKTLRALKDEYKIAVITG-DIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred EEEEe---cCCCCcCHHHHHHHHHHHHHhhCCeEEEec-eeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 45555 99999999999999865442111110 11 1222222222222 11 11111 111111101122222
Q ss_pred ccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcC-eEEEEEeCCCCCchhHHHHHHHHHhcCCce-----EEEEecCcc
Q 007929 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITD-GALVVVDCIEGVCVQTETVLRQALGERIRP-----VLTVNKMDR 154 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D-~ailvvda~~g~~~~t~~~l~~~~~~~~p~-----ivviNK~D~ 154 (584)
+...... ..+.||-+.| ++.. ..+-...| .-|+|+|..+|...- +.+-|. ++||||.|+
T Consensus 90 l~~~~~~--~Dll~iEs~G--NL~~--~~sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DL 154 (202)
T COG0378 90 LVLDFPD--LDLLFIESVG--NLVC--PFSPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDL 154 (202)
T ss_pred HhhcCCc--CCEEEEecCc--ceec--ccCcchhhceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHh
Confidence 2222222 5788999999 2111 11223456 779999999995322 112232 689999999
Q ss_pred c
Q 007929 155 C 155 (584)
Q Consensus 155 ~ 155 (584)
.
T Consensus 155 a 155 (202)
T COG0378 155 A 155 (202)
T ss_pred H
Confidence 7
No 387
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.00076 Score=71.57 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=39.3
Q ss_pred CceeEEEeCCCCCCCchHHHHHH----hhh-----cCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAA----LRI-----TDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~----l~~-----~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~ 155 (584)
.++.+.||||||+.....+-... ++. ..-.+||+||+.|-... ..+++.. ..+++ =++++|+|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f--~~~~~~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAY--ESLNYRRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHh--cCCCCCEEEEEcccCC
Confidence 46788999999986433332222 222 22578999998774222 2232322 23443 3899999987
No 388
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.19 E-value=0.0022 Score=62.59 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=49.0
Q ss_pred cccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH------HhcCCceEEEEecCcc
Q 007929 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA------LGERIRPVLTVNKMDR 154 (584)
Q Consensus 82 ~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~------~~~~~p~ivviNK~D~ 154 (584)
..+....++.+.||||+|-.. ..+..++..+|.+|+..-++...-.++.+.++.. ....+|.-|+.|++.-
T Consensus 76 ~e~a~~~~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 76 YEAAEASGFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred HHHHHhcCCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 333444468899999999765 3467788899999998877765444444333322 2346788899999974
No 389
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0016 Score=68.14 Aligned_cols=64 Identities=22% Similarity=0.133 Sum_probs=36.4
Q ss_pred CceeEEEeCCCCCCCchH----HHHHHhh--hcCeEEEEEeCCCCCchhH-HHHHHHHHhcCCce-EEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSS----EVTAALR--ITDGALVVVDCIEGVCVQT-ETVLRQALGERIRP-VLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~----e~~~~l~--~~D~ailvvda~~g~~~~t-~~~l~~~~~~~~p~-ivviNK~D~~ 155 (584)
+++.+.||||||...... ++..... ..|..++|+++. ...+. ..+++. -..+++ -+++||+|..
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~--f~~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPK--LAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHh--cCcCCCCEEEEEcccCC
Confidence 357899999999854333 3333232 235667777763 22222 222222 123443 3889999997
No 390
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.16 E-value=0.0021 Score=66.45 Aligned_cols=132 Identities=22% Similarity=0.121 Sum_probs=71.5
Q ss_pred ccCCCCChhHHHHHHHHHcCccccc------cCCCeeeeC---ChhhHhhhccceecceEEEEeecch-hhhhcccccCC
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQE------VAGDVRMTD---TRQDEAERGITIKSTGISLYYEMTD-AALKSYRGERQ 86 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~------~~g~~~~~D---~~~~E~~r~~Ti~~~~~~~~~~~~~-~~~~~~~~~~~ 86 (584)
-|=-|||||||+++||.+.. .++ .-|. .-.| .....-+.=..+..+++.+....+. +.+..+.. ..
T Consensus 7 tGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGE-vgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~-~~ 82 (323)
T COG0523 7 TGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGE-VGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR-RR 82 (323)
T ss_pred eecCCCCHHHHHHHHHhccC--CCcEEEEEecCcc-ccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh-cc
Confidence 67789999999999987665 111 0110 0111 1111111122333444444433222 22233333 22
Q ss_pred CCceeEEEeCCCCCCCc-------hH-HHHHHhhhcCeEEEEEeCCCCCchhH---HHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDF-------SS-EVTAALRITDGALVVVDCIEGVCVQT---ETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df-------~~-e~~~~l~~~D~ailvvda~~g~~~~t---~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+ .....+|-|-|..+= .. ......-..|++|-||||........ .....|+.... ++++||.|+.
T Consensus 83 ~-~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD---~ivlNK~Dlv 158 (323)
T COG0523 83 D-RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD---VIVLNKTDLV 158 (323)
T ss_pred C-CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc---EEEEecccCC
Confidence 3 266789999997652 21 22223345688999999987655433 23334433333 7999999998
Q ss_pred c
Q 007929 156 F 156 (584)
Q Consensus 156 ~ 156 (584)
.
T Consensus 159 ~ 159 (323)
T COG0523 159 D 159 (323)
T ss_pred C
Confidence 4
No 391
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.16 E-value=0.0012 Score=66.85 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
..+-|+| +|.+|||||||+++|+..
T Consensus 103 ~~~~v~l---~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNL---VSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHH
Confidence 3456777 999999999999999765
No 392
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.15 E-value=0.0021 Score=52.46 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=41.3
Q ss_pred CCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE
Q 007929 380 DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (584)
Q Consensus 380 ~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav 446 (584)
..|. ...+||.+|+++.||+|++++.+ .. .+|..|.. ...++++|.|||.|++
T Consensus 13 ~~~~-~v~Gkv~~G~v~~Gd~v~~~P~~----~~-----~~V~si~~----~~~~~~~a~aGd~v~l 65 (81)
T cd03695 13 ADFR-GYAGTIASGSIRVGDEVVVLPSG----KT-----SRVKSIET----FDGELDEAGAGESVTL 65 (81)
T ss_pred CCcE-EEEEEEccceEECCCEEEEcCCC----Ce-----EEEEEEEE----CCcEeCEEcCCCEEEE
Confidence 3455 68999999999999999987653 22 46777762 3477999999999988
No 393
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.15 E-value=0.0026 Score=64.24 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=39.6
Q ss_pred CceeEEEeCCCCCCCchHH----HHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSE----VTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e----~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~ 155 (584)
.++.+.||||||......+ +...++ ..|-.++|+||+.+-+ +...+++... .+++ =++++|+|-.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~--~~~~~~~I~TKlDet 224 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFK--DIHIDGIVFTKFDET 224 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhC--CCCCCEEEEEeecCC
Confidence 3578999999998754333 333332 3456899999875422 2222333322 2443 3899999997
No 394
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.13 E-value=0.00042 Score=70.96 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
.+++ +|++|+|||||+++|+...
T Consensus 163 ~~~~---~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 163 TSVL---VGQSGVGKSTLINALLPDL 185 (287)
T ss_pred eEEE---ECCCCCCHHHHHHHHhchh
Confidence 5667 9999999999999997654
No 395
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0012 Score=70.51 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=37.9
Q ss_pred ceeEEEeCCCCCCCchHHHHHH---hhh---cCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAA---LRI---TDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~---l~~---~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
++.+.+|||+|......+...- +.. .+-.+||+|++.+-..- ..++.. . ..+++- ++++|+|-.
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~-~~~~~~-f-~~~~~~~~I~TKlDEt 339 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL-DEVISA-Y-QGHGIHGCIITKVDEA 339 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH-HHHHHH-h-cCCCCCEEEEEeeeCC
Confidence 5678999999987643333222 222 23568999998553222 122222 1 134443 899999987
No 396
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.11 E-value=0.0011 Score=64.07 Aligned_cols=67 Identities=24% Similarity=0.238 Sum_probs=46.6
Q ss_pred CCCceeEEEeCCC-CCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCccc
Q 007929 86 QGNEYLINLIDSP-GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTP-G~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~ 155 (584)
.-+.+.+.++||- |.+.|. +...+.+|.+|+|+|++----...+++-+.+.+.+++ +.+++||+|..
T Consensus 130 ~~~~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 130 ILNRYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred hcccCcEEEEecccchhhhc---cccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 3335678888884 444444 3345678999999999865445556666666777855 55899999975
No 397
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.10 E-value=0.00063 Score=62.78 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.0
Q ss_pred eeeEEecccccCCCCChhHHHHHHHH
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
..++++ +|.+|+|||||+++|+.
T Consensus 101 ~~~~~~---ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 101 EGKVGV---VGYPNVGKSSIINALKG 123 (156)
T ss_pred CcEEEE---ECCCCCCHHHHHHHHhC
Confidence 456777 99999999999999964
No 398
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.07 E-value=0.0013 Score=68.21 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=54.0
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-----------chhHHHHHHHHHh----cCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-----------~~~t~~~l~~~~~----~~~p~ivviNK~D 153 (584)
+..+.++|++|+.............++++++|||.++-. ...+...++.+.. .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 788999999999998888899999999999999998732 2234445555443 4679999999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
+.
T Consensus 240 ~f 241 (317)
T cd00066 240 LF 241 (317)
T ss_pred HH
Confidence 87
No 399
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.01 E-value=0.0044 Score=66.83 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=39.1
Q ss_pred ceeEEEeCCCCCCCchH----HHHHHhh---hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSS----EVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~----e~~~~l~---~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~ 155 (584)
++.+.||||||+..+.. +....+. .-+-+.+|+++..+. .....++.... .+++ -+++||+|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~--~~~~~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFS--RLPLDGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhC--CCCCCEEEEeccccc
Confidence 57899999999865532 3333333 223568889987543 22233444432 3333 4899999996
No 400
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=97.00 E-value=0.0057 Score=60.79 Aligned_cols=64 Identities=27% Similarity=0.247 Sum_probs=42.1
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh---cCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
+.+.+||||+.. ...+..++..||.+++++.+..--.....+.+..+.+ ...+.-+++|+.|..
T Consensus 115 ~D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRGP--SPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 479999999964 3667889999999999998853211222212222222 223355899999865
No 401
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.99 E-value=0.0011 Score=62.74 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=36.7
Q ss_pred ceeEEEeCCCCCCCchHHH-----HHHhhhcCeEEEEEeCCCCCch-hHHHHH-HHHHhcCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSEV-----TAALRITDGALVVVDCIEGVCV-QTETVL-RQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~-----~~~l~~~D~ailvvda~~g~~~-~t~~~l-~~~~~~~~p~ivviNK~D~~~ 156 (584)
.....||-|.|..+-..-+ ....-..+.+|.|||+..-... .....+ .|+ ..-=++++||+|+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi---~~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI---AFADVIVLNKIDLVS 155 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH---CT-SEEEEE-GGGHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc---hhcCEEEEeccccCC
Confidence 4567789999976643331 1222346889999999553111 111222 222 233489999999984
No 402
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0025 Score=65.95 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=58.2
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeec-chhhhhcccc-cC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEM-TDAALKSYRG-ER 85 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~-~~~~~~~~~~-~~ 85 (584)
.++++| +|.+|+|||||.++|-.....+ +.+- =.||+.......... +...+.++.. ..
T Consensus 2 ~l~~GI---VGlPNVGKSTlFnAlT~~~a~~----aNYP------------F~TIePN~Giv~v~d~rl~~L~~~~~c~~ 62 (372)
T COG0012 2 SLKIGI---VGLPNVGKSTLFNALTKAGAEI----ANYP------------FCTIEPNVGVVYVPDCRLDELAEIVKCPP 62 (372)
T ss_pred CceeEE---ecCCCCcHHHHHHHHHcCCccc----cCCC------------cccccCCeeEEecCchHHHHHHHhcCCCC
Confidence 357778 9999999999999994332111 0000 034444333332221 0011111111 22
Q ss_pred CCCceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCC
Q 007929 86 QGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 86 ~~~~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (584)
+-....+.|+|.+|.+. +-.+...-+|.+|+++-|||+.+
T Consensus 63 k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 63 KIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 23345688999999764 33455677899999999999974
No 403
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.0075 Score=64.04 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=41.2
Q ss_pred CceeEEEeCCCCCCCch----HHHHHHhhhc--C-eEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFS----SEVTAALRIT--D-GALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~----~e~~~~l~~~--D-~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~ 155 (584)
.++.+.||||||..... .++..-+..+ + -.+||+||+.|-... ..++.... .+++ =++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~--~~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFS--PFSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhc--CCCCCEEEEEeccCC
Confidence 36889999999975432 3444444433 3 589999999873322 23444322 2333 4899999997
No 404
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.96 E-value=0.00099 Score=70.44 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ +|.+|+|||||+|+|+....
T Consensus 155 ~~v~~---vG~~nvGKStliN~l~~~~~ 179 (360)
T TIGR03597 155 KDVYV---VGVTNVGKSSLINKLLKQNN 179 (360)
T ss_pred CeEEE---ECCCCCCHHHHHHHHHhhcc
Confidence 47888 99999999999999987543
No 405
>PRK13796 GTPase YqeH; Provisional
Probab=96.95 E-value=0.00085 Score=71.02 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHc
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
..+.+ +|.+|+|||||+|+|+...
T Consensus 161 ~~v~v---vG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYV---VGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEE---EcCCCCcHHHHHHHHHhhc
Confidence 36788 9999999999999998643
No 406
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.95 E-value=0.0024 Score=66.91 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=55.2
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-----------CchhHHHHHHHHHh----cCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----------VCVQTETVLRQALG----ERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-----------~~~~t~~~l~~~~~----~~~p~ivviNK~D 153 (584)
+..+.++|..|+..+..........++++|+|||.++- ....+...|+.+.. .+.|+++++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 78899999999999888999999999999999999863 23344455666554 3679999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 263 ~~~ 265 (342)
T smart00275 263 LFE 265 (342)
T ss_pred hHH
Confidence 973
No 407
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=96.95 E-value=0.0021 Score=64.77 Aligned_cols=112 Identities=25% Similarity=0.192 Sum_probs=68.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|++ +|-.|+|||||+++|- .+....+..- =-|.+......... ++
T Consensus 180 viav---VGYTNaGKsTLikaLT-~Aal~p~drL---------------FATLDpT~h~a~Lp---------------sg 225 (410)
T KOG0410|consen 180 VIAV---VGYTNAGKSTLIKALT-KAALYPNDRL---------------FATLDPTLHSAHLP---------------SG 225 (410)
T ss_pred eEEE---EeecCccHHHHHHHHH-hhhcCccchh---------------heeccchhhhccCC---------------CC
Confidence 4666 9999999999999995 2222211100 01222222111122 26
Q ss_pred eeEEEeCCCCCCC-ch-------HHHHHHhhhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCCce-------EEEEecCc
Q 007929 90 YLINLIDSPGHVD-FS-------SEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIRP-------VLTVNKMD 153 (584)
Q Consensus 90 ~~inliDTPG~~d-f~-------~e~~~~l~~~D~ailvvda~~g~-~~~t~~~l~~~~~~~~p~-------ivviNK~D 153 (584)
..+.+.||-|+.. +- ..+..-+..+|..+-|+|.++.. ..|-+.++.-+...++|. +=|=||+|
T Consensus 226 ~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD 305 (410)
T KOG0410|consen 226 NFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKID 305 (410)
T ss_pred cEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccc
Confidence 7788999999753 11 12233345789999999999864 556667777777778762 23557777
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
..
T Consensus 306 ~e 307 (410)
T KOG0410|consen 306 YE 307 (410)
T ss_pred cc
Confidence 65
No 408
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.94 E-value=0.0056 Score=65.48 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.2
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCcc
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGII 38 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i 38 (584)
..+||| +|+.|+|||||+++|....|..
T Consensus 219 ~~~IvI---~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 219 VRTVAI---LGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CcEEEE---EcCCCCCHHHHHHHHHHHhCCC
Confidence 458899 9999999999999998776654
No 409
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.91 E-value=0.0047 Score=64.76 Aligned_cols=98 Identities=22% Similarity=0.166 Sum_probs=57.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC-ccccccCCCeeeeCChhhHhhhccceecceEEEEeecc-hhhhhcccccCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMT-DAALKSYRGERQ 86 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~-~~~~~~~~~~~~ 86 (584)
.+++| +|.+++|||||.++|-.... .+.. .. -.|+......+.+... ...+...-....
T Consensus 3 lk~Gi---vGlPn~GKSTlfnaLT~~~~~~~a~-yp---------------ftTi~p~~g~v~v~d~r~d~L~~~~~~~~ 63 (368)
T TIGR00092 3 LSGGI---VGLPNVGKSTLFAATTNLLGNEAAN-PP---------------FTTIEPNAGVVNPSDPRLDLLAIYIKPEK 63 (368)
T ss_pred ceEEE---ECCCCCChHHHHHHHhCCCccccCC-CC---------------CCCCCCceeEEEechhHHHHHHHHhCCcC
Confidence 56777 99999999999999943322 1100 00 0123333322222210 001111111222
Q ss_pred CCceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCC
Q 007929 87 GNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 87 ~~~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (584)
-....+.++|.||... +.......++.+|+.+.|||+.+
T Consensus 64 ~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 64 VPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 2356789999999764 44467788999999999999964
No 410
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.87 E-value=0.0014 Score=60.59 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=39.2
Q ss_pred HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh--cCCceEEEEecCccc
Q 007929 107 VTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 155 (584)
Q Consensus 107 ~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~--~~~p~ivviNK~D~~ 155 (584)
+..++..+|.+++|+|+..+.......+.+.+.. .++|+++++||+|+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 4678999999999999998776666666655443 348999999999996
No 411
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.86 E-value=0.0018 Score=59.74 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=40.6
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 105 SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 105 ~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
......++.+|.+|+|+|+.++...+...+...+...+.|+++++||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 345566777999999999998877776666665555688999999999986
No 412
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.84 E-value=0.0073 Score=61.06 Aligned_cols=65 Identities=26% Similarity=0.290 Sum_probs=43.2
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCceE-EEEecCcc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPV-LTVNKMDR 154 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~----~~~~p~i-vviNK~D~ 154 (584)
.|.+.||||||.... ..+..++..||.+|+++.+...--....+.++.+. ..+++.. +++|++|.
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 688999999987542 23456799999999999886543333333333221 2355544 78999985
No 413
>PRK00098 GTPase RsgA; Reviewed
Probab=96.75 E-value=0.0012 Score=68.06 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=19.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
.+++ +|++|+|||||+++|+...
T Consensus 166 ~~~~---~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVL---AGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEE---ECCCCCCHHHHHHHHhCCc
Confidence 4666 9999999999999997543
No 414
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.75 E-value=0.004 Score=65.53 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=74.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeC-Ch--hhHhhhccceecceEEEEeec-chh--hhhcccc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTD-TR--QDEAERGITIKSTGISLYYEM-TDA--ALKSYRG 83 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D-~~--~~E~~r~~Ti~~~~~~~~~~~-~~~--~~~~~~~ 83 (584)
.|-. +|--||||||.+.-|..+-.. +.........| ++ ..||-+...-....-.|.... .+| ..+.-..
T Consensus 102 vImm---vGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 102 VILM---VGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred EEEE---EeccCCChHhHHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 4555 999999999999988433221 10000011122 12 234433333333222222111 111 1222333
Q ss_pred cCCCCceeEEEeCCCCCCC----chHHHH--HHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 84 ERQGNEYLINLIDSPGHVD----FSSEVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 84 ~~~~~~~~inliDTPG~~d----f~~e~~--~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.+....+.+.|+||+|.-. .+.|+. ......|=+++|+||.-|- ...-...+....+++- ++++|+|-.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ---dA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ---DAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch---HHHHHHHHHhhhcCCceEEEEcccCC
Confidence 4455578999999999644 333332 2334567889999998773 2222223344567766 899999987
No 415
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.71 E-value=0.0044 Score=67.42 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=35.5
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhh-hcCe-----EEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALR-ITDG-----ALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~-~~D~-----ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+.+|||+|.......+...+. ..+. .++|+|+..+... ..++++.. +....--+++||+|-.
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f-~~~~~~g~IlTKlDet 404 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAY-RGPGLAGCILTKLDEA 404 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHh-ccCCCCEEEEeCCCCc
Confidence 456889999995543332222222 2222 6899999765422 11222221 2222234789999987
No 416
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.67 E-value=0.0087 Score=49.23 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=43.9
Q ss_pred CCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 380 DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 380 ~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
..|. ++.+||-+|+|++|+.+.+++.+ + ..+..+|.+|. ....++++|.+|+-|.+.
T Consensus 13 ~~g~-vag~kV~~G~l~~g~~v~vlr~~----~--~~~~g~i~sl~----~~~~~v~~a~~G~ecgi~ 69 (84)
T cd03692 13 KVGN-IAGCYVTDGKIKRNAKVRVLRNG----E--VIYEGKISSLK----RFKDDVKEVKKGYECGIT 69 (84)
T ss_pred CCcE-EEEEEEEECEEeCCCEEEEEcCC----C--EEEEEEEEEEE----EcCcccCEECCCCEEEEE
Confidence 4466 99999999999999999988643 1 11224677777 446889999999999884
No 417
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.0051 Score=70.07 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=37.1
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhh------hcCeEEEEEeCCCCCchhHHHHHHHHHhc-CCce-EEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALR------ITDGALVVVDCIEGVCVQTETVLRQALGE-RIRP-VLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~------~~D~ailvvda~~g~~~~t~~~l~~~~~~-~~p~-ivviNK~D~~ 155 (584)
++.+.||||||......+....+. ..+-.++|+|++.+... -..+++..... ..++ =++++|+|-.
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~-l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDT-LNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHH-HHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 567999999995433333333222 23457999999854221 11222222111 1233 3889999987
No 418
>PRK10818 cell division inhibitor MinD; Provisional
Probab=96.65 E-value=0.0053 Score=62.12 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=47.3
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc---------CCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---------RIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~---------~~p~ivviNK~D~~ 155 (584)
..+.+.|||||+... .....++..+|.+|+|+++...-...+..++..+... ..+..+++|++|..
T Consensus 112 ~~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 112 MDFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred cCCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 368999999998875 4567789999999999999765445555565554311 12245889999864
No 419
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.59 E-value=0.0074 Score=61.38 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=60.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecch-hhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~-~~~~~~~~~ 84 (584)
.+++++.| +|.+++|||||.++|-... . +++.--+ .||+.....+...... ..+.++...
T Consensus 18 ~~~lkiGI---VGlPNvGKST~fnalT~~~--a---~~~NfPF-----------~TIdPn~a~V~v~d~Rfd~l~~~Y~~ 78 (391)
T KOG1491|consen 18 GNNLKIGI---VGLPNVGKSTFFNALTKSK--A---GAANFPF-----------CTIDPNEARVEVPDSRFDLLCPIYGP 78 (391)
T ss_pred CCcceeeE---eeCCCCchHHHHHHHhcCC--C---CccCCCc-----------ceeccccceeecCchHHHHHHHhcCC
Confidence 46678988 9999999999999993211 0 1110011 3444443333221110 112222333
Q ss_pred CCCCceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCC
Q 007929 85 RQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (584)
.....-.+++.|++|... +-.....-+|.+|+.+-||++.+
T Consensus 79 ~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 79 KSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 344456799999999754 22334567899999999999864
No 420
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.52 E-value=0.018 Score=58.23 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=41.1
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCceE-EEEecCcc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPV-LTVNKMDR 154 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~----~~~~p~i-vviNK~D~ 154 (584)
+.|.+.||||||...- ..+..++..||.+|+++.+..--...+..+++.+. ..+++.. +++|++|.
T Consensus 114 ~~yD~ViID~~~~~~~-~~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVC-GGFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCcccc-CccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 3689999999986431 12234689999999998764332223333333222 2355544 78999875
No 421
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.51 E-value=0.0025 Score=61.96 Aligned_cols=85 Identities=26% Similarity=0.263 Sum_probs=58.5
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..-+|++ +|-+.+|||||+..+-..... .+++. -.|.......+.|+
T Consensus 61 GdaRVal---IGfPSVGKStlLs~iT~T~Se----aA~ye------------FTTLtcIpGvi~y~-------------- 107 (364)
T KOG1486|consen 61 GDARVAL---IGFPSVGKSTLLSKITSTHSE----AASYE------------FTTLTCIPGVIHYN-------------- 107 (364)
T ss_pred CCeEEEE---ecCCCccHHHHHHHhhcchhh----hhcee------------eeEEEeecceEEec--------------
Confidence 4457888 999999999999998322111 01100 02334444455666
Q ss_pred CCceeEEEeCCCCCCCc-------hHHHHHHhhhcCeEEEEEeCCCC
Q 007929 87 GNEYLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEG 126 (584)
Q Consensus 87 ~~~~~inliDTPG~~df-------~~e~~~~l~~~D~ailvvda~~g 126 (584)
+..|.++|.||..+= -.++++..+.||.+++|+||+.+
T Consensus 108 --ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 108 --GANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred --CceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 889999999998652 23466778899999999999865
No 422
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.48 E-value=0.0031 Score=64.20 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=44.5
Q ss_pred CCCC-CchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 98 PGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 98 PG~~-df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
|||. ....++...+..+|.+|+|+|+..+.......+.+.+ .+.|+++|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 7875 3566788899999999999999887766665554543 367899999999986
No 423
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.47 E-value=0.0029 Score=59.45 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=43.2
Q ss_pred CCCC-CchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 98 PGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 98 PG~~-df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
|||. ....++..++..||.+++|+|+.++.......++..+ .+.|+++++||+|+.
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 6664 3566788899999999999999987665555544432 367899999999986
No 424
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.44 E-value=0.0057 Score=62.47 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=75.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHH---cCccccccCCCee---eeCChhhH-hhhccceecceEEEEeecch-hhh
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAA---AGIIAQEVAGDVR---MTDTRQDE-AERGITIKSTGISLYYEMTD-AAL 78 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~---~g~i~~~~~g~~~---~~D~~~~E-~~r~~Ti~~~~~~~~~~~~~-~~~ 78 (584)
+.+.|.+ +|-.|+||||.+.-|.+. .|.-.-..+|.+. ..+....= .+-|+.+- ......++ +.+
T Consensus 138 ~p~Vil~---vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI----~~~~G~DpAaVa 210 (340)
T COG0552 138 KPFVILF---VGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVI----SGKEGADPAAVA 210 (340)
T ss_pred CcEEEEE---EecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEE----ccCCCCCcHHHH
Confidence 4567777 999999999999888433 2221111222110 01111111 11233322 22222222 344
Q ss_pred hcccccCCCCceeEEEeCCCCC----CCchHHHHHHhhhc---Ce-----EEEEEeCCCCCchhHH-HHHHHHHhcCCce
Q 007929 79 KSYRGERQGNEYLINLIDSPGH----VDFSSEVTAALRIT---DG-----ALVVVDCIEGVCVQTE-TVLRQALGERIRP 145 (584)
Q Consensus 79 ~~~~~~~~~~~~~inliDTPG~----~df~~e~~~~l~~~---D~-----ailvvda~~g~~~~t~-~~l~~~~~~~~p~ 145 (584)
..-..++..+++.+.||||+|. .+++.|...-.|++ +. .++++||+-|-..-.. +.+.. -+++
T Consensus 211 fDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~e----av~l 286 (340)
T COG0552 211 FDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNE----AVGL 286 (340)
T ss_pred HHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHH----hcCC
Confidence 4455566677899999999995 35677766555544 33 7788899988432211 22222 3444
Q ss_pred E-EEEecCccc
Q 007929 146 V-LTVNKMDRC 155 (584)
Q Consensus 146 i-vviNK~D~~ 155 (584)
= ++++|+|-.
T Consensus 287 ~GiIlTKlDgt 297 (340)
T COG0552 287 DGIILTKLDGT 297 (340)
T ss_pred ceEEEEecccC
Confidence 3 889999954
No 425
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.42 E-value=0.032 Score=58.80 Aligned_cols=131 Identities=22% Similarity=0.258 Sum_probs=72.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccC-CCeeeeCChhhHhhhccceecc--------eEEEEeecchhhhhc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA-GDVRMTDTRQDEAERGITIKST--------GISLYYEMTDAALKS 80 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~-g~~~~~D~~~~E~~r~~Ti~~~--------~~~~~~~~~~~~~~~ 80 (584)
-|-||+ +|++-+||||++.++....-.-.-... ...|..|..|+... |-||... .+.+...
T Consensus 17 dIYiGV-VGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~a-GktImTTEPKFiP~eAv~I~l~-------- 86 (492)
T PF09547_consen 17 DIYIGV-VGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGA-GKTIMTTEPKFIPNEAVEITLD-------- 86 (492)
T ss_pred ceEEEe-ecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCC-CCceeccCCcccCCcceEEEec--------
Confidence 445555 999999999999998654332110000 01123333333221 2222211 1111111
Q ss_pred ccccCCCCceeEEEeCCCCCC-------------------------CchHHHHHHhh--hcC----eEEEEEeCCCCC--
Q 007929 81 YRGERQGNEYLINLIDSPGHV-------------------------DFSSEVTAALR--ITD----GALVVVDCIEGV-- 127 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~-------------------------df~~e~~~~l~--~~D----~ailvvda~~g~-- 127 (584)
.+-..++-+|||-|+. -|...+.-+-+ ..| |+|+--|++-+.
T Consensus 87 -----~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dip 161 (492)
T PF09547_consen 87 -----DGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIP 161 (492)
T ss_pred -----CCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCC
Confidence 2336788899999852 24444444443 122 456667776542
Q ss_pred ----chhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 128 ----CVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 128 ----~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
....+++...+.+-++|+++++|-.+=.
T Consensus 162 Re~Y~eAEervI~ELk~igKPFvillNs~~P~ 193 (492)
T PF09547_consen 162 RENYVEAEERVIEELKEIGKPFVILLNSTKPY 193 (492)
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence 3345566777778899999999987644
No 426
>PRK13695 putative NTPase; Provisional
Probab=96.40 E-value=0.018 Score=54.24 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=30.4
Q ss_pred hhhcCeEEEEEe---CCCCCchhHHHHHHHHHhcCCceEEEEecC
Q 007929 111 LRITDGALVVVD---CIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (584)
Q Consensus 111 l~~~D~ailvvd---a~~g~~~~t~~~l~~~~~~~~p~ivviNK~ 152 (584)
+..+|. +++| +.+....+..+.+..+.+.+.|+++++||.
T Consensus 94 l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred cCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 334554 7889 666767777788888888899999999984
No 427
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.36 E-value=0.027 Score=46.45 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=31.6
Q ss_pred eEEEeCCCCCCCchHH-HHHHhhhcCeEEEEEeCCCCCchhHHHH
Q 007929 91 LINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETV 134 (584)
Q Consensus 91 ~inliDTPG~~df~~e-~~~~l~~~D~ailvvda~~g~~~~t~~~ 134 (584)
.+.++|+||..+.... ....+..+|.+++++++...-.......
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 4789999998763321 2677889999999999877655544444
No 428
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.31 E-value=0.11 Score=55.88 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=83.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCC------------------------eeeeCChhh--------
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD------------------------VRMTDTRQD-------- 54 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~------------------------~~~~D~~~~-------- 54 (584)
+-..|++ +|.-.+|||+.++.+.. ++ |..+++|. .+-.|-.++
T Consensus 307 hLPRVVV---VGDQSaGKTSVLEmiAq-AR-IFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~ 381 (980)
T KOG0447|consen 307 HLPRVVV---VGDQSAGKTSVLEMIAQ-AR-IFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRH 381 (980)
T ss_pred cCceEEE---EcCccccchHHHHHHHH-hc-cCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHH
Confidence 4457888 99999999999999843 22 22233220 111121111
Q ss_pred --------HhhhccceecceEEEEeecchhhhhcccccCCCCceeEEEeCCCCCCC-------------chHHHHHHhhh
Q 007929 55 --------EAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVD-------------FSSEVTAALRI 113 (584)
Q Consensus 55 --------E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDTPG~~d-------------f~~e~~~~l~~ 113 (584)
..+.|.|+....+++..+++ +-.++.++|.||... .....-..+..
T Consensus 382 e~E~RMr~sVr~GkTVSnEvIsltVKGP-------------gLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~N 448 (980)
T KOG0447|consen 382 EIELRMRKNVKEGCTVSPETISLNVKGP-------------GLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQN 448 (980)
T ss_pred HHHHHHHhcccCCcccccceEEEeecCC-------------CcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcC
Confidence 12446777777777776632 245789999999642 22233455667
Q ss_pred cCeEEEEEe-CCCCCc-hhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHHHHHHHHHHH
Q 007929 114 TDGALVVVD-CIEGVC-VQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIE 175 (584)
Q Consensus 114 ~D~ailvvd-a~~g~~-~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~ 175 (584)
..++|+||. ++-..+ +.-..+.-++--.+...|+|++|.|+...+ -++|+ +++++++
T Consensus 449 PNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn-lA~Pd----RI~kIle 507 (980)
T KOG0447|consen 449 PNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN-VASPS----RIQQIIE 507 (980)
T ss_pred CCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhc-cCCHH----HHHHHHh
Confidence 778888764 211111 111123344455677789999999997422 23553 4555544
No 429
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.29 E-value=0.016 Score=59.43 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=41.3
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH---h-cCCceE-EEEecCcc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---G-ERIRPV-LTVNKMDR 154 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~---~-~~~p~i-vviNK~D~ 154 (584)
.|.+.+|||||.... .....++..||.+|+++++..---.....+++.+. + .+++.. +++|+.|.
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 688999999987431 22446788999999999886533233333333222 1 234444 88999873
No 430
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.27 E-value=0.0069 Score=73.61 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=28.7
Q ss_pred hhcCeEEEEEeCCCCCchhHH---H---HH-------HHHHhcCCceEEEEecCccc
Q 007929 112 RITDGALVVVDCIEGVCVQTE---T---VL-------RQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 112 ~~~D~ailvvda~~g~~~~t~---~---~l-------~~~~~~~~p~ivviNK~D~~ 155 (584)
+-.+|+|++||+.+=...... . .+ ......++|+-|+++|||+.
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 458999999999764321111 1 11 12234577888999999987
No 431
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.23 E-value=0.021 Score=59.32 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=67.5
Q ss_pred ccCCCCChhHHHHHHHHHcCc----cccccCCCeeeeCChhhHhh--hccceecceEEEEeecch-hhhhcccccCC--C
Q 007929 17 ANSTFAGKSTLTDSLVAAAGI----IAQEVAGDVRMTDTRQDEAE--RGITIKSTGISLYYEMTD-AALKSYRGERQ--G 87 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~----i~~~~~g~~~~~D~~~~E~~--r~~Ti~~~~~~~~~~~~~-~~~~~~~~~~~--~ 87 (584)
.|-.|||||||+++|+..... +-...-| ..-.|..-.+.. .-.++.-+++.+...... ..+.++....+ .
T Consensus 10 tGFLGaGKTTll~~ll~~~~~~riaVi~NEfG-~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~~~~~~~ 88 (318)
T PRK11537 10 TGFLGAGKTTLLRHILNEQHGYKIAVIENEFG-EVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGN 88 (318)
T ss_pred EECCCCCHHHHHHHHHhcccCCcccccccCcC-CccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHHHHhccC
Confidence 789999999999999865321 0000111 111222211111 012233344444333221 22333222111 1
Q ss_pred CceeEEEeCCCCCCCchHHHHHHh---------hhcCeEEEEEeCCCCCchhHH--HHHHHHHhcCCceEEEEecCcccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAAL---------RITDGALVVVDCIEGVCVQTE--TVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l---------~~~D~ailvvda~~g~~~~t~--~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
......+|-|-|..+-. .+...+ -..|++|.|||+..+...... ....|+.. -=++++||+|+..
T Consensus 89 ~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~IvlnK~Dl~~ 164 (318)
T PRK11537 89 IQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADRILLTKTDVAG 164 (318)
T ss_pred CCCCEEEEECCCccCHH-HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCEEEEeccccCC
Confidence 13556789999998732 333332 135889999999865322111 11233222 2379999999983
No 432
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.07 E-value=0.042 Score=57.60 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=25.9
Q ss_pred ceeEEEeCCCCCCCchHHHHHHh--------hhcCeEEEEEeCCCC
Q 007929 89 EYLINLIDSPGHVDFSSEVTAAL--------RITDGALVVVDCIEG 126 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l--------~~~D~ailvvda~~g 126 (584)
.....+|.|.|..+-.. +...+ -..|++|-|||+...
T Consensus 92 ~~d~IvIEtsG~a~P~~-i~~~~~~~~l~~~~~l~~vvtvVDa~~~ 136 (341)
T TIGR02475 92 RPDHILIETSGLALPKP-LVQAFQWPEIRSRVTVDGVVTVVDGPAV 136 (341)
T ss_pred CCCEEEEeCCCCCCHHH-HHHHhcCccccceEEeeeEEEEEECchh
Confidence 35678999999987433 33332 256889999999754
No 433
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=95.99 E-value=0.023 Score=54.94 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=51.9
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
..+.+.|||||+... ..+.....+.+|.+|+|+++...-.....+..+.+.+.+.+++ +|+||.|..
T Consensus 126 ~~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 126 KYFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred hcCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 368899999998422 2333445567999999999987777777778788777788877 899999976
No 434
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.98 E-value=0.024 Score=57.25 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=25.9
Q ss_pred CceeEEEeCCCCCCCchHH-HHHHhhhcCeEEEEEeCCC
Q 007929 88 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIE 125 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e-~~~~l~~~D~ailvvda~~ 125 (584)
..|.+.||||||....... ...++..||.+|+++.+..
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 3689999999987531111 1123447999999998864
No 435
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.98 E-value=0.0092 Score=60.16 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=47.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
.+..|-| +|-+|+|||||+|++--......+.. ..-.+.|+|+..+...-...
T Consensus 142 ~~~~vmV---vGvPNVGKSsLINa~r~~~Lrk~k~a----------~vG~~pGVT~~V~~~iri~~-------------- 194 (335)
T KOG2485|consen 142 SEYNVMV---VGVPNVGKSSLINALRNVHLRKKKAA----------RVGAEPGVTRRVSERIRISH-------------- 194 (335)
T ss_pred CceeEEE---EcCCCCChHHHHHHHHHHHhhhccce----------eccCCCCceeeehhheEecc--------------
Confidence 5678888 99999999999999954444333211 11124578887665322222
Q ss_pred CCceeEEEeCCCCCC-CchHHHHHHhhh
Q 007929 87 GNEYLINLIDSPGHV-DFSSEVTAALRI 113 (584)
Q Consensus 87 ~~~~~inliDTPG~~-df~~e~~~~l~~ 113 (584)
.-.+.+|||||.. +-+...+.+++.
T Consensus 195 --rp~vy~iDTPGil~P~I~~~e~~lKL 220 (335)
T KOG2485|consen 195 --RPPVYLIDTPGILVPSIVDVEDGLKL 220 (335)
T ss_pred --CCceEEecCCCcCCCCCCCHHHhhhh
Confidence 3458999999952 223334444443
No 436
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.90 E-value=0.014 Score=56.89 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=39.5
Q ss_pred CceeEEEeCCCCCCCchHHHHHHh--hhcCeEEEEEeCCCCCchhHHHHHHHHHh---c-CCceE-EEEecCcc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALG---E-RIRPV-LTVNKMDR 154 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l--~~~D~ailvvda~~g~~~~t~~~l~~~~~---~-~~p~i-vviNK~D~ 154 (584)
..|.+.+|||||......- ...+ +.||.+++|+++..--.....++++.+.. . +.+.. +++||++.
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 4699999999986532111 1223 48999999998754222222333333322 2 44444 89999985
No 437
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=95.80 E-value=0.045 Score=46.05 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=50.6
Q ss_pred EEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccC
Q 007929 371 YVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLD 450 (584)
Q Consensus 371 ~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~ 450 (584)
+|.-...+...|. ++-+=|.+|+|+.||.+.+. ..+ .||..|+-..| .++++|.||+.|-|.|++
T Consensus 4 ~VlE~~~~~g~G~-vatviV~~GtL~~Gd~iv~G-~~~----------gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~ 68 (95)
T cd03702 4 VVIESKLDKGRGP-VATVLVQNGTLKVGDVLVAG-TTY----------GKVRAMFDENG---KRVKEAGPSTPVEILGLK 68 (95)
T ss_pred EEEEEEecCCCCc-cEEEEEEcCeEeCCCEEEEc-ccc----------cEEEEEECCCC---CCCCEECCCCcEEEcCCC
Confidence 3444444666688 89999999999999998742 211 36777775555 679999999999999988
Q ss_pred cc
Q 007929 451 QY 452 (584)
Q Consensus 451 ~~ 452 (584)
+.
T Consensus 69 ~~ 70 (95)
T cd03702 69 GV 70 (95)
T ss_pred CC
Confidence 74
No 438
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.79 E-value=0.0099 Score=56.75 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=41.8
Q ss_pred CCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 98 PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 98 PG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
|.+..|...+..+++.+|++++|+|+.+........++. ...+.|+++|+||+|+.
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLL 74 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcC
Confidence 344447788888999999999999998765444444422 23568899999999986
No 439
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.76 E-value=0.0083 Score=61.41 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=44.1
Q ss_pred CCCCCC-chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 97 SPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 97 TPG~~d-f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
=|||.. -..++...+..+|.+|+|+|+..+.......+... .. +.|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~-~~-~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKI-IG-NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHH-hC-CCCEEEEEEchhcC
Confidence 377753 34567888999999999999998877666555443 33 78999999999986
No 440
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.75 E-value=0.01 Score=61.59 Aligned_cols=59 Identities=32% Similarity=0.392 Sum_probs=41.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.+.|.| +|-+|+||||++++|......-.... .|+|.....+.+
T Consensus 250 k~sIrvGV---iG~PNVGKSSvINsL~~~k~C~vg~~---------------pGvT~smqeV~L---------------- 295 (435)
T KOG2484|consen 250 KTSIRVGI---IGYPNVGKSSVINSLKRRKACNVGNV---------------PGVTRSMQEVKL---------------- 295 (435)
T ss_pred CcceEeee---ecCCCCChhHHHHHHHHhccccCCCC---------------ccchhhhhheec----------------
Confidence 46677777 99999999999999975543211111 245555555554
Q ss_pred CCCceeEEEeCCCCCC
Q 007929 86 QGNEYLINLIDSPGHV 101 (584)
Q Consensus 86 ~~~~~~inliDTPG~~ 101 (584)
+..|-|+|+||..
T Consensus 296 ---dk~i~llDsPgiv 308 (435)
T KOG2484|consen 296 ---DKKIRLLDSPGIV 308 (435)
T ss_pred ---cCCceeccCCcee
Confidence 5779999999964
No 441
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.70 E-value=0.024 Score=53.33 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=33.4
Q ss_pred CeEEEEEeCCCCCchhHHHHHHH--HHhcCCceEEEEecCccc
Q 007929 115 DGALVVVDCIEGVCVQTETVLRQ--ALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 115 D~ailvvda~~g~~~~t~~~l~~--~~~~~~p~ivviNK~D~~ 155 (584)
|.+++|+|+..........+.+. +...+.|.++++||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999999877777766665 234578999999999997
No 442
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.67 E-value=0.011 Score=63.28 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=25.6
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAG 44 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g 44 (584)
.+.|++ +|-+|+||||++|+|.+...+-.....|
T Consensus 314 ~vtVG~---VGYPNVGKSSTINaLvG~KkVsVS~TPG 347 (562)
T KOG1424|consen 314 VVTVGF---VGYPNVGKSSTINALVGRKKVSVSSTPG 347 (562)
T ss_pred eeEEEe---ecCCCCchhHHHHHHhcCceeeeecCCC
Confidence 355555 9999999999999998766655544454
No 443
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.65 E-value=0.084 Score=55.67 Aligned_cols=139 Identities=16% Similarity=0.153 Sum_probs=66.3
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCCh---hhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR---QDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~---~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
.-.|++ +|+.|+||||.+--|.............+--.+|.. ..||-+..---.. +++..-.+..-+.....
T Consensus 203 ~~vi~L---VGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~-vp~~vv~~~~el~~ai~- 277 (407)
T COG1419 203 KRVIAL---VGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMG-VPLEVVYSPKELAEAIE- 277 (407)
T ss_pred CcEEEE---ECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhC-CceEEecCHHHHHHHHH-
Confidence 346777 999999999998888544432222111112334433 2343221110000 11111100000110011
Q ss_pred CCCCceeEEEeCCCCCCCchH----HHHHHhhhc--CeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSS----EVTAALRIT--DGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~----e~~~~l~~~--D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.-..+.+.||||.|+.-... ++...+..+ .-.-||++++.- ...-.+++.+. ..+|+= ++++|+|-.
T Consensus 278 -~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f--~~~~i~~~I~TKlDET 351 (407)
T COG1419 278 -ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQF--SLFPIDGLIFTKLDET 351 (407)
T ss_pred -HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHh--ccCCcceeEEEccccc
Confidence 11256899999999865433 333333333 345677887532 11122233332 134443 889999987
No 444
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.22 Score=45.78 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=31.2
Q ss_pred HHHHHHhhhcCeEEEEEeCCCCCchhHH---HHHHHHHhcCCceEEEEecCccc
Q 007929 105 SEVTAALRITDGALVVVDCIEGVCVQTE---TVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 105 ~e~~~~l~~~D~ailvvda~~g~~~~t~---~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
....+|+..||. ++||-.-.++..+. ..++.++..+.|.|..+-+-++.
T Consensus 92 ~al~rA~~~aDv--IIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~ 143 (179)
T COG1618 92 PALRRALEEADV--IIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH 143 (179)
T ss_pred HHHHHHhhcCCE--EEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCC
Confidence 345567777785 45575543433333 44566677888988888877664
No 445
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=95.60 E-value=0.038 Score=54.90 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=49.7
Q ss_pred hhhhcccccCCCCceeEEEeCCCCCCC-chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCc
Q 007929 76 AALKSYRGERQGNEYLINLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMD 153 (584)
Q Consensus 76 ~~~~~~~~~~~~~~~~inliDTPG~~d-f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D 153 (584)
..++++.......+..+.+||||.-.. =--.+...++.+|+||+|-=+.+=-.....+.+..+.+.++|++ +|-| |=
T Consensus 143 ~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVEN-Ms 221 (300)
T KOG3022|consen 143 SMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVEN-MS 221 (300)
T ss_pred HHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEec-cc
Confidence 335556666677778899999987532 11223445566699998865544333334455677888999999 5555 43
Q ss_pred c
Q 007929 154 R 154 (584)
Q Consensus 154 ~ 154 (584)
.
T Consensus 222 ~ 222 (300)
T KOG3022|consen 222 G 222 (300)
T ss_pred c
Confidence 4
No 446
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=95.53 E-value=0.15 Score=51.33 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=72.8
Q ss_pred ccCCCCChhHHHHHHHHHcCccccccCC-CeeeeCChhhHhh------hc------cceecceEEEEeecch-hhhhccc
Q 007929 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTRQDEAE------RG------ITIKSTGISLYYEMTD-AALKSYR 82 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~i~~~~~g-~~~~~D~~~~E~~------r~------~Ti~~~~~~~~~~~~~-~~~~~~~ 82 (584)
.|-.|||||||++.+|...+ .++-+. -+.+-|....|+. .| +-..-++.-+..+.+. ..+.++-
T Consensus 63 TGyLGaGKtTLLn~Il~~~h--gKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvraie~lv 140 (391)
T KOG2743|consen 63 TGYLGAGKTTLLNYILTGQH--GKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVRAIENLV 140 (391)
T ss_pred EecccCChHHHHHHHHccCC--CceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHHHHHHHH
Confidence 69999999999999974322 111000 0001111111111 00 1111223334444333 2222333
Q ss_pred ccCCCCceeEEEeCCCCCCCchH-----HHHHHh---hhcCeEEEEEeCCCCCchh----HHHHHHHHHhcCC--ceEEE
Q 007929 83 GERQGNEYLINLIDSPGHVDFSS-----EVTAAL---RITDGALVVVDCIEGVCVQ----TETVLRQALGERI--RPVLT 148 (584)
Q Consensus 83 ~~~~~~~~~inliDTPG~~df~~-----e~~~~l---~~~D~ailvvda~~g~~~~----t~~~l~~~~~~~~--p~ivv 148 (584)
+ .++ .....++.|-|..+=.. ....++ --.||+|-||||....-.- ..-+|..|. .++ .=.++
T Consensus 141 q-kkG-kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~-~QiA~AD~II 217 (391)
T KOG2743|consen 141 Q-KKG-KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEAT-RQIALADRII 217 (391)
T ss_pred h-cCC-CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHH-HHHhhhheee
Confidence 3 333 45677899999877211 112222 2469999999997542110 011121110 011 11478
Q ss_pred EecCccccccccCCHHHHHHHHHHHHHHHHHH
Q 007929 149 VNKMDRCFLELQVDGEEAYQTFQKVIENANVI 180 (584)
Q Consensus 149 iNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~ 180 (584)
+||.|+.. ++.-..+++.+..||..
T Consensus 218 ~NKtDli~-------~e~~~~l~q~I~~INsl 242 (391)
T KOG2743|consen 218 MNKTDLVS-------EEEVKKLRQRIRSINSL 242 (391)
T ss_pred eccccccC-------HHHHHHHHHHHHHhhhH
Confidence 99999984 33345555555666544
No 447
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.49 E-value=0.05 Score=40.92 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=26.8
Q ss_pred HHHHHHhh-hcCeEEEEEeCCCC--CchhHH-HHHHHHHhc--CCceEEEEecCc
Q 007929 105 SEVTAALR-ITDGALVVVDCIEG--VCVQTE-TVLRQALGE--RIRPVLTVNKMD 153 (584)
Q Consensus 105 ~e~~~~l~-~~D~ailvvda~~g--~~~~t~-~~l~~~~~~--~~p~ivviNK~D 153 (584)
.+++.||+ ..+.+++++|+++. -..... .+++.+... +.|.++|+||+|
T Consensus 4 ~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 4 MQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 34567776 45788999999864 333333 233333332 789999999998
No 448
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.49 E-value=0.047 Score=55.40 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=38.5
Q ss_pred CceeEEEeCCCCCCCch-HHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH---hcCCceE-EEEecCc
Q 007929 88 NEYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPV-LTVNKMD 153 (584)
Q Consensus 88 ~~~~inliDTPG~~df~-~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~---~~~~p~i-vviNK~D 153 (584)
.+|.+.+|||||..... -....++..||.+|+|+.+..--......+++.+. ..++++. +++|+.+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 36899999999874211 11122356899999999875432222223333332 2355554 7889764
No 449
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.45 E-value=0.072 Score=54.22 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=26.7
Q ss_pred ceeEEEeCCCCCCCchH-HHHHHhhhcCeEEEEEeCCCC
Q 007929 89 EYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEG 126 (584)
Q Consensus 89 ~~~inliDTPG~~df~~-e~~~~l~~~D~ailvvda~~g 126 (584)
+|.+.||||||..-... .+..++..||.+|+++.+..-
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~ 154 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPM 154 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccchHH
Confidence 68999999998542111 123356679999999998653
No 450
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.41 E-value=0.02 Score=52.78 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=32.4
Q ss_pred CeEEEEEeCCCCCchhHHHHH-HHHHhcCCceEEEEecCccc
Q 007929 115 DGALVVVDCIEGVCVQTETVL-RQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 115 D~ailvvda~~g~~~~t~~~l-~~~~~~~~p~ivviNK~D~~ 155 (584)
|.+|+|+|+.++.......+. ..+...++|+++++||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999887666655554 34456689999999999996
No 451
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.38 E-value=0.095 Score=49.24 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=73.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCc-cccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.|.| +|.++|||||+++.|....+. ...-..+ +...+|....+ ..+...+
T Consensus 3 ~ili---~G~~~sGKS~~a~~l~~~~~~~~~~iat~-----~~~~~e~~~ri---------------------~~h~~~R 53 (170)
T PRK05800 3 LILV---TGGARSGKSRFAERLAAQSGLQVLYIATA-----QPFDDEMAARI---------------------AHHRQRR 53 (170)
T ss_pred EEEE---ECCCCccHHHHHHHHHHHcCCCcEeCcCC-----CCChHHHHHHH---------------------HHHHhcC
Confidence 3566 999999999999999876431 0000000 11112221111 1122223
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCch-----h-----HH---HHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-----Q-----TE---TVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~-----~-----t~---~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..|..+.+|.+. .+..... ...+-++++|+..+... + .. ..+..+.+.+.+.+++-|=...-
T Consensus 54 ~~~w~t~E~~~~l---~~~i~~~-~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg~g 129 (170)
T PRK05800 54 PAHWQTVEEPLDL---AELLRAD-AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNEVGMG 129 (170)
T ss_pred CCCCeEecccccH---HHHHHhh-cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcCCccc
Confidence 4557778887752 2332221 12244688888655311 1 11 12222234466677776654443
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhhcc
Q 007929 156 FLELQVDGEEAYQTFQKVIENANVIMATYE 185 (584)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~ 185 (584)
..+.+..-..|.+.+..+|+.+....
T Consensus 130 ----~vp~~~~~r~~~d~lG~lnq~la~~a 155 (170)
T PRK05800 130 ----IVPEYRLGRHFRDIAGRLNQQLAAAA 155 (170)
T ss_pred ----ccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 23344555789999999999996543
No 452
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.38 E-value=0.14 Score=50.81 Aligned_cols=61 Identities=26% Similarity=0.193 Sum_probs=42.7
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
..+.+.++|||-... ..+..++..||.+++|+-+...- .. .+.+ ....-..-++||+.|-.
T Consensus 116 ~~~~~iliD~P~g~~--~~~~~al~~aD~vL~V~~~Da~s-~~---~L~q-~~l~~~~~~liNq~~~~ 176 (243)
T PF06564_consen 116 GPYDWILIDTPPGPS--PYTRQALAAADLVLVVVNPDAAS-HA---RLHQ-RALPAGHRFLINQYDPA 176 (243)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHHhCCeEEEEeCCCHHH-HH---HHHH-hcccCCcEEEEeccCcc
Confidence 467899999999654 77888999999999999876431 11 1222 11122357899999986
No 453
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=95.38 E-value=0.0011 Score=61.45 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=79.8
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
-+++-| +|..++|||+++.+-+.+...-.- +-.|.++...-.+.|....
T Consensus 25 L~k~lV---ig~~~vgkts~i~ryv~~nfs~~y----------------RAtIgvdfalkVl~wdd~t------------ 73 (229)
T KOG4423|consen 25 LFKVLV---IGDLGVGKTSSIKRYVHQNFSYHY----------------RATIGVDFALKVLQWDDKT------------ 73 (229)
T ss_pred hhhhhe---eeeccccchhHHHHHHHHHHHHHH----------------HHHHhHHHHHHHhccChHH------------
Confidence 357777 999999999999998765431110 0012222222234454211
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh------cC--CceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ER--IRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~------~~--~p~ivviNK~D~~ 155 (584)
-.++.|||..|+..|...+.-..+.+.++.+|+|.+.........-|.+=+. .+ +|+++..||+|..
T Consensus 74 -~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 74 -IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred -HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 3557899999999998888888899999999999998777666666765321 23 3467889999997
No 454
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.21 E-value=0.058 Score=53.64 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=49.3
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.+.+.|||||+..+ ..+..++..||.+|+|+++...-...+.+.+..+...+.+.+ +++|+.+..
T Consensus 108 ~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 68999999999765 567788899999999999875544445555555555567755 899999864
No 455
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.93 E-value=0.039 Score=48.38 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=17.1
Q ss_pred EEecccccCCCCChhHHHHHHHH
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
|++ .|.+|+||||++..|..
T Consensus 2 i~~---~GkgG~GKTt~a~~la~ 21 (116)
T cd02034 2 IAI---TGKGGVGKTTIAALLAR 21 (116)
T ss_pred EEE---ECCCCCCHHHHHHHHHH
Confidence 566 99999999999988844
No 456
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.047 Score=65.02 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=40.9
Q ss_pred eeEEEeCCCCCC------CchHH-----------HHHHhhhcCeEEEEEeCCCCCch--hHH-HH----------HHHHH
Q 007929 90 YLINLIDSPGHV------DFSSE-----------VTAALRITDGALVVVDCIEGVCV--QTE-TV----------LRQAL 139 (584)
Q Consensus 90 ~~inliDTPG~~------df~~e-----------~~~~l~~~D~ailvvda~~g~~~--~t~-~~----------l~~~~ 139 (584)
-.-.+|||.|-. ++... -.+..+-.+|+|+.+|..+=... +.. .+ ++..+
T Consensus 174 deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL 253 (1188)
T COG3523 174 DEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL 253 (1188)
T ss_pred cceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 445689999931 11111 12344578999999998763222 111 11 12224
Q ss_pred hcCCceEEEEecCcccc
Q 007929 140 GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 140 ~~~~p~ivviNK~D~~~ 156 (584)
....|+-+++||+|+..
T Consensus 254 ~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 254 HARLPVYLVLTKADLLP 270 (1188)
T ss_pred ccCCceEEEEecccccc
Confidence 55789999999999974
No 457
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.70 E-value=0.068 Score=54.22 Aligned_cols=49 Identities=6% Similarity=0.030 Sum_probs=29.3
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEE-EeCCCCCchhHHHHHHHHHh
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVV-VDCIEGVCVQTETVLRQALG 140 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailv-vda~~g~~~~t~~~l~~~~~ 140 (584)
++.+.|+|++.+..|-+.....+..+|++++. +-++ +..++.++..+.+
T Consensus 87 ~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~~s---~~d~~~lve~~~~ 136 (274)
T PRK14493 87 GMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPTAA---DLDTEDLVAALES 136 (274)
T ss_pred CCCEEEEECCCCCCCCEEEEEecccCCcEEEecCCCC---ccCHHHHHHHHHh
Confidence 57899999999988766666666677743332 2222 1225555555433
No 458
>PRK01889 GTPase RsgA; Reviewed
Probab=94.70 E-value=0.025 Score=59.71 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=20.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
-.+++ +|.+|+|||||+++|+....
T Consensus 196 ~~~~l---vG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVAL---LGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEE---ECCCCccHHHHHHHHHHhcc
Confidence 35777 99999999999999986544
No 459
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=0.13 Score=53.48 Aligned_cols=66 Identities=17% Similarity=0.299 Sum_probs=40.4
Q ss_pred CCceeEEEeCCCCCCC----chHHHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 87 GNEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~d----f~~e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
..++.+.|+||.|.-. +..|+..... .-|-+|+|+||+-|-.... ...+.+..+-+= ++++|+|-.
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~---Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA---QARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH---HHHHHHHhhccceEEEEecccC
Confidence 3478899999999543 3333333222 3589999999988732211 112223333333 789999976
No 460
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=94.48 E-value=0.039 Score=53.49 Aligned_cols=67 Identities=24% Similarity=0.249 Sum_probs=41.3
Q ss_pred ceeEEEeCCCCCCCch------HHHHHHhhhcCeEEEEEeCCCCC------chhHH--HHHHHHHhcCCceEEEEecCcc
Q 007929 89 EYLINLIDSPGHVDFS------SEVTAALRITDGALVVVDCIEGV------CVQTE--TVLRQALGERIRPVLTVNKMDR 154 (584)
Q Consensus 89 ~~~inliDTPG~~df~------~e~~~~l~~~D~ailvvda~~g~------~~~t~--~~l~~~~~~~~p~ivviNK~D~ 154 (584)
..++.++|+||+++|. ..+.+-++..|.=+.+|.-.+.. ..... ..+.-++....|-+=|+.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 5667899999987753 34666677777544444433321 11111 1123445678898989999998
Q ss_pred c
Q 007929 155 C 155 (584)
Q Consensus 155 ~ 155 (584)
.
T Consensus 176 ~ 176 (290)
T KOG1533|consen 176 L 176 (290)
T ss_pred H
Confidence 6
No 461
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=0.063 Score=52.20 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=48.5
Q ss_pred eeEEEeCCCCCCCchHH---HHHHhhhcCeEEEEEeCCCCCchh-HHHHHHHHHhcC----CceEEEEecCccccccccC
Q 007929 90 YLINLIDSPGHVDFSSE---VTAALRITDGALVVVDCIEGVCVQ-TETVLRQALGER----IRPVLTVNKMDRCFLELQV 161 (584)
Q Consensus 90 ~~inliDTPG~~df~~e---~~~~l~~~D~ailvvda~~g~~~~-t~~~l~~~~~~~----~p~ivviNK~D~~~~~~~~ 161 (584)
..+.+||-||+.+|..- -+.-.+.+.+.|+|+|+.+..+.. +.-+...+..+. +.+=++|-|.|-...+++.
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ki 154 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKI 154 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhh
Confidence 44778999999987654 355678888999999998765443 333333333332 2334899999988655544
Q ss_pred C
Q 007929 162 D 162 (584)
Q Consensus 162 ~ 162 (584)
+
T Consensus 155 e 155 (347)
T KOG3887|consen 155 E 155 (347)
T ss_pred h
Confidence 3
No 462
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.41 E-value=0.26 Score=49.91 Aligned_cols=66 Identities=11% Similarity=-0.014 Sum_probs=37.2
Q ss_pred CceeEEEeCCCCCCCchH-HHHHHhhhcCeEEEEEeCCCCCchhHHHHH---HHHH-hcCCceE-EEEecCc
Q 007929 88 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVL---RQAL-GERIRPV-LTVNKMD 153 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~-e~~~~l~~~D~ailvvda~~g~~~~t~~~l---~~~~-~~~~p~i-vviNK~D 153 (584)
..|.+.||||||..-... ....++.+||.+|+++.+..---.....++ +... ..++.+. +++|+..
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~ 187 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRK 187 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCC
Confidence 469999999998642111 112244589999999987543222222333 3322 2344443 7788643
No 463
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.26 E-value=0.045 Score=42.05 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.5
Q ss_pred ccCCCCChhHHHHHHHH
Q 007929 17 ANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~ 33 (584)
.|+.|+|||||++++.+
T Consensus 29 ~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 29 TGPNGSGKSTLLDAIQT 45 (62)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999999843
No 464
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=94.21 E-value=0.13 Score=44.53 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=18.1
Q ss_pred eeEEecccccCCCCChhHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSL 31 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~L 31 (584)
++|++ +|..|+|||+|+.++
T Consensus 1 ~kvv~---~G~~gvGKt~l~~~~ 20 (124)
T smart00010 1 FKVVG---IGDSGVGKVGKSARF 20 (124)
T ss_pred CEEEE---ECCCChhHHHHHHHH
Confidence 36788 999999999999998
No 465
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.18 E-value=0.14 Score=51.88 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=36.0
Q ss_pred ceeEEEeCCCCCCCchHH-HHHHhhhcCeEEEEEeCCCCCchhHHHHHH---HHHh-cCCceE-EEEec
Q 007929 89 EYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLR---QALG-ERIRPV-LTVNK 151 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e-~~~~l~~~D~ailvvda~~g~~~~t~~~l~---~~~~-~~~p~i-vviNK 151 (584)
.|.+.||||||..-...- ...++.+||.+|+++.+..---.....+++ .+.+ .+++.. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 689999999986521111 112345899999999886533333333332 2222 355554 45554
No 466
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=94.12 E-value=0.12 Score=53.83 Aligned_cols=83 Identities=12% Similarity=0.060 Sum_probs=60.3
Q ss_pred hhccceecceEEEEeecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCc--------
Q 007929 57 ERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------- 128 (584)
Q Consensus 57 ~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~-------- 128 (584)
.|.-|.....+.|.++ +..+-++|++|+..=..........++++|+|++-++=.+
T Consensus 178 ~R~~T~GI~e~~F~~k----------------~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~ 241 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIK----------------GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETT 241 (354)
T ss_pred hccCcCCeeEEEEEeC----------------CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccch
Confidence 4555666667777777 7899999999997655666677788899999999876322
Q ss_pred ---hhHHHHHHHHHh----cCCceEEEEecCccc
Q 007929 129 ---VQTETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 129 ---~~t~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
..+..++..++. .+.++|+|+||.|+.
T Consensus 242 NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 242 NRMHESLKLFESICNNKWFANTSIILFLNKKDLF 275 (354)
T ss_pred hHHHHHHHHHHHHhcCcccccCcEEEEeecHHHH
Confidence 233444544443 267899999999997
No 467
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=94.11 E-value=0.11 Score=51.93 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=49.8
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC-ceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~-p~ivviNK~D~~ 155 (584)
.+.+.|||||+..+ ..+..++..+|.+|+|+.+...-...+.++++.+...+. +..+++|+++..
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCch
Confidence 58899999999765 456778999999999999876655666666666655554 455899999853
No 468
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.08 E-value=0.14 Score=53.54 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=54.8
Q ss_pred EEEeCCCCCCC-chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH-hc-CCceEEEEecCccccccccCCHHHHHH
Q 007929 92 INLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-GE-RIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (584)
Q Consensus 92 inliDTPG~~d-f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~-~~-~~p~ivviNK~D~~~~~~~~~~~~~~~ 168 (584)
.+-.|-+++.. |..+...-+..+|.+|-|+||.+........+=++.. .. +...|+|+||+|+. |. .
T Consensus 124 ~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLV-------Pr---E 193 (435)
T KOG2484|consen 124 ENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLV-------PR---E 193 (435)
T ss_pred hhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccC-------CH---H
Confidence 34556666543 7788889999999999999999987655555544433 23 47789999999998 32 4
Q ss_pred HHHHHHHHHHHH
Q 007929 169 TFQKVIENANVI 180 (584)
Q Consensus 169 ~~~~~l~~v~~~ 180 (584)
..++.+.-++.-
T Consensus 194 v~e~Wl~YLr~~ 205 (435)
T KOG2484|consen 194 VVEKWLVYLRRE 205 (435)
T ss_pred HHHHHHHHHHhh
Confidence 555555554443
No 469
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.00 E-value=0.42 Score=47.54 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=21.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
-+|+|.+ +|-.|-|||||++.|..
T Consensus 41 F~FNilC---vGETg~GKsTLmdtLFN 64 (406)
T KOG3859|consen 41 FCFNILC---VGETGLGKSTLMDTLFN 64 (406)
T ss_pred ceEEEEE---eccCCccHHHHHHHHhc
Confidence 4678888 99999999999999953
No 470
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=94.00 E-value=0.27 Score=48.57 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=50.2
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeC-------------CC----CCchhHHHHHHHHHhc-----CCce-
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDC-------------IE----GVCVQTETVLRQALGE-----RIRP- 145 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda-------------~~----g~~~~t~~~l~~~~~~-----~~p~- 145 (584)
+..+.+|||||..+. .+..|...||..|-.++. .. +...-.+.+|.. .+. +.++
T Consensus 98 ~~DfLVID~PGtd~~--lsr~Ahs~ADtLiTPlNdSfvDfDllg~vD~~~~~v~~ps~Yse~vw~~-r~~ra~~~~~~id 174 (261)
T PF09140_consen 98 DLDFLVIDTPGTDDR--LSRVAHSMADTLITPLNDSFVDFDLLGQVDPETFKVIGPSVYSEMVWEA-RKLRAQADGKPID 174 (261)
T ss_dssp H-SEEEEEE-SSS-H--HHHHHHHT-SEEEEEEESSHHHHCCCEEE-TTTS-EEEE-HHHHHHHHH-HHCCCCTSSS--E
T ss_pred CCCEEEEeCCCCCcH--HHHHHHHhCCEEEccCchhHHhHHHHhccCcccceecCccHHHHHHHHH-HHHHHHcCCCCcc
Confidence 678999999998874 445678899987776544 22 355667778865 322 2232
Q ss_pred -EEEEecCccccccccCCHHHHHHHHHHHHHHHHHHH
Q 007929 146 -VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM 181 (584)
Q Consensus 146 -ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l 181 (584)
||+=|.+-.. ...-+.++.+.++++...+
T Consensus 175 Wvv~rnRl~~~-------~a~Nk~~~~~~l~~ls~ri 204 (261)
T PF09140_consen 175 WVVLRNRLSHL-------DARNKRRVEEALEELSKRI 204 (261)
T ss_dssp EEEEEESBTT---------HHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCccHH-------HhHHHHHHHHHHHHHHHhh
Confidence 5677876554 2333467888888887777
No 471
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=93.97 E-value=0.14 Score=53.18 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=44.0
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCceEEEEecCccccccccCCHHHHHHHHHHHHH
Q 007929 106 EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIE 175 (584)
Q Consensus 106 e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~--~~p~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~ 175 (584)
|....+..+|.+|-|+||.+.+......+-..+.+. ...+|+|+||+|+. |-++.+..-.++.
T Consensus 206 ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLV-------Ptwvt~~Wv~~lS 270 (572)
T KOG2423|consen 206 ELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLV-------PTWVTAKWVRHLS 270 (572)
T ss_pred HHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccc-------cHHHHHHHHHHHh
Confidence 445567789999999999998877777665554332 33478999999998 5555554444433
No 472
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=93.79 E-value=0.055 Score=56.13 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHH
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
...++|.+ +|-+|+||||++|.|-.
T Consensus 305 kkqISVGf---iGYPNvGKSSiINTLR~ 329 (572)
T KOG2423|consen 305 KKQISVGF---IGYPNVGKSSIINTLRK 329 (572)
T ss_pred ccceeeee---ecCCCCchHHHHHHHhh
Confidence 35678877 99999999999999943
No 473
>CHL00175 minD septum-site determining protein; Validated
Probab=93.67 E-value=0.15 Score=51.87 Aligned_cols=65 Identities=23% Similarity=0.180 Sum_probs=49.2
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~ 155 (584)
.+.+.|||||+..+ ..+..++..+|.+++|+++...-...+..+++.+.+.+.+ +-+++|+++..
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChh
Confidence 58899999999764 5667888999999999998765555566666665555554 44899999754
No 474
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.66 E-value=0.06 Score=47.00 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.4
Q ss_pred EEecccccCCCCChhHHHHHHHHHcC
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
|+| .|.+||||||+++.|....|
T Consensus 2 I~I---~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 III---SGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEE---EESTTSSHHHHHHHHHHHHT
T ss_pred EEE---ECCCCCCHHHHHHHHHHHHC
Confidence 566 99999999999999966544
No 475
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=93.60 E-value=0.51 Score=39.71 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=50.7
Q ss_pred EEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccC
Q 007929 371 YVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLD 450 (584)
Q Consensus 371 ~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~ 450 (584)
+|.-.-.+...|. ++-+=|.+|+|++||.+.+. .. . .||..++--. -..+.+|.+|+.+.+.|++
T Consensus 4 ~ViE~~~~~g~G~-vatviV~~GtL~~Gd~iv~G-~~-----~-----GkVr~~~d~~---g~~v~~a~Ps~~v~i~g~~ 68 (95)
T cd03701 4 TVIESKLDKGRGP-VATVIVQNGTLKKGDVIVAG-GT-----Y-----GKIRTMVDEN---GKALLEAGPSTPVEILGLK 68 (95)
T ss_pred EEEEEEecCCCCe-eEEEEEEcCeEecCCEEEEC-Cc-----c-----ceEEEEECCC---CCCccccCCCCCEEEeeec
Confidence 3433344566687 89999999999999998752 11 1 3566666444 4678999999999999988
Q ss_pred cccccce
Q 007929 451 QYITKNA 457 (584)
Q Consensus 451 ~~~~~tg 457 (584)
+. ...|
T Consensus 69 ~~-p~aG 74 (95)
T cd03701 69 DV-PKAG 74 (95)
T ss_pred CC-ccCC
Confidence 75 3444
No 476
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=93.55 E-value=0.077 Score=52.97 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=37.3
Q ss_pred chHHHHHHhhhcCeEEEEEeCCCCC-chhHHHHH-HHHHhcCCceEEEEecCccc
Q 007929 103 FSSEVTAALRITDGALVVVDCIEGV-CVQTETVL-RQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 103 f~~e~~~~l~~~D~ailvvda~~g~-~~~t~~~l-~~~~~~~~p~ivviNK~D~~ 155 (584)
|...+...++.+|++++|+|+.+.. ......-| ..+...++|+++++||+|+.
T Consensus 26 ~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 26 KNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred cceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 3333445688999999999998654 33333333 34445789999999999996
No 477
>PRK12289 GTPase RsgA; Reviewed
Probab=93.54 E-value=0.12 Score=54.39 Aligned_cols=48 Identities=25% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHHhhhcCeEEEEEeCCCCC-ch-hHHHHHHHHHhcCCceEEEEecCccc
Q 007929 108 TAALRITDGALVVVDCIEGV-CV-QTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 108 ~~~l~~~D~ailvvda~~g~-~~-~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
..+++.+|.+++|+|+.+.. .. ...+.+..+...++|+++|+||+|+.
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 34688999999999997543 33 22445555556799999999999996
No 478
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.42 E-value=0.059 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=19.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
..|++ +|+.|+||||++..|...
T Consensus 195 ~vi~~---vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIAL---VGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHH
Confidence 46777 999999999999998643
No 479
>PRK01889 GTPase RsgA; Reviewed
Probab=93.31 E-value=0.16 Score=53.59 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=37.6
Q ss_pred hhhcCeEEEEEeCCCCCch-hHHHHHHHHHhcCCceEEEEecCccc
Q 007929 111 LRITDGALVVVDCIEGVCV-QTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 111 l~~~D~ailvvda~~g~~~-~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+|.+++|+++..+... ...+.+-.+...++++++|+||+|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~ 155 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLC 155 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4678999999999877766 55567777778899999999999997
No 480
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=93.31 E-value=0.23 Score=50.25 Aligned_cols=62 Identities=21% Similarity=0.311 Sum_probs=50.0
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEec
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNK 151 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK 151 (584)
.|.+.|||||.-.. ..+.....+.+|++|+|+.+..--........+.+.+.+.+++ +|+|+
T Consensus 212 ~yD~ViiD~pp~~~-~~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 212 DYDVVIVDTPSAEH-SSDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred cCCEEEEeCCCccc-ccHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 68899999998643 3556667789999999999977666677777777777888988 88885
No 481
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=93.25 E-value=0.5 Score=46.18 Aligned_cols=67 Identities=15% Similarity=-0.033 Sum_probs=50.5
Q ss_pred ceeEEEeCCCCCCCchHH-HHHHhhh--cCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSE-VTAALRI--TDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e-~~~~l~~--~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.|.+.|+|||........ +...+.. +|.+++|+.+...-..++.+.++.+...+.++. +|+|+....
T Consensus 113 ~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 113 LYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 399999999986433322 2333333 489999999988888888889998888888865 899998765
No 482
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.24 E-value=0.076 Score=51.95 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=21.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAG 44 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g 44 (584)
-|+| +|++|||||||++.+ |.++++..|
T Consensus 33 ~vaI---~GpSGSGKSTLLnii----g~ld~pt~G 60 (226)
T COG1136 33 FVAI---VGPSGSGKSTLLNLL----GGLDKPTSG 60 (226)
T ss_pred EEEE---ECCCCCCHHHHHHHH----hcccCCCCc
Confidence 5777 999999999999999 334444444
No 483
>PRK07261 topology modulation protein; Provisional
Probab=93.11 E-value=0.082 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.1
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
+|+| +|.+|+|||||+..|...
T Consensus 2 ri~i---~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAI---IGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEE---EcCCCCCHHHHHHHHHHH
Confidence 5788 999999999999998544
No 484
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.09 E-value=0.27 Score=48.93 Aligned_cols=64 Identities=19% Similarity=0.092 Sum_probs=55.2
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
..+.|||||.-.- -.+.+++..+|.||+|.-++.--....+++++.+...++|..+++||-+.-
T Consensus 164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred cceeEEecCCCCC--ChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 5899999998654 468999999999999999987666778888888888999999999999654
No 485
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.02 E-value=0.35 Score=44.85 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.|+| +|..|+|||||+++|+..
T Consensus 3 vi~i---~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 3 VIGF---VGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred EEEE---ECCCCCCHHHHHHHHHHH
Confidence 3566 999999999999999654
No 486
>PRK08118 topology modulation protein; Reviewed
Probab=92.99 E-value=0.089 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=20.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+|.| +|++|||||||+..|....+
T Consensus 3 rI~I---~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIIL---IGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5778 99999999999999965544
No 487
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.92 E-value=0.084 Score=47.48 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=17.7
Q ss_pred ccCCCCChhHHHHHHHHHcC
Q 007929 17 ANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g 36 (584)
+|++|||||||+..|....+
T Consensus 5 ~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 5 CGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EESTTSSHHHHHHHHHHHST
T ss_pred ECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999976555
No 488
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.90 E-value=1.1 Score=42.06 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=27.0
Q ss_pred HhcCCceEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhcc
Q 007929 139 LGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE 185 (584)
Q Consensus 139 ~~~~~p~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~ 185 (584)
.+.+...|+|-|=+-.- ..+.+..-..|.+.+..+|+.+....
T Consensus 113 ~~~~~~~viVsnEvG~g----~vp~~~~~r~f~d~lG~lnq~la~~a 155 (169)
T cd00544 113 RNKPGTLILVSNEVGLG----VVPENALGRRFRDELGRLNQRLAALA 155 (169)
T ss_pred HcCCCcEEEEECCcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 34455667776643221 12344445789999999999996543
No 489
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.78 E-value=0.087 Score=41.40 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=17.6
Q ss_pred EEecccccCCCCChhHHHHHHHH
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
|++ .|.+|+||||+++.|..
T Consensus 2 i~i---~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAI---TGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEE---ECCCCCCHHHHHHHHHH
Confidence 566 99999999999999954
No 490
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.69 E-value=0.4 Score=45.05 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-++| +|..|||||||+++|+..
T Consensus 8 ii~i---vG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 8 LLAI---AAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred EEEE---ECCCCChHHHHHHHHHHH
Confidence 4566 999999999999999743
No 491
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=92.69 E-value=0.14 Score=52.43 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=34.5
Q ss_pred hhhcCeEEEEEeCCCCC-chhH-HHHHHHHHhcCCceEEEEecCccc
Q 007929 111 LRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 111 l~~~D~ailvvda~~g~-~~~t-~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+|.+++|+|+.+.. .... .+.+..+...++|+++|+||+|+.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~ 122 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLL 122 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCC
Confidence 67899999999998876 3332 333444556789999999999996
No 492
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=92.62 E-value=0.16 Score=54.43 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=50.6
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-----------chhHHHHHHHHHh----cCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-----------~~~t~~~l~~~~~----~~~p~ivviNK~D 153 (584)
+..+.++|+.|+..-.......+..++++|+||+.++=. ...+..+|..++. .+.|+|||+||+|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence 789999999999876677777888899999999976422 2234455665543 2678899999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
+.
T Consensus 315 ~f 316 (389)
T PF00503_consen 315 LF 316 (389)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 493
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=92.61 E-value=0.71 Score=50.56 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=62.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++.-+ +|.-++|||.|++++++.. +++...+ ...-..++.+..+.
T Consensus 424 ~Vf~C~V---~G~k~~GKs~lL~sflgr~--~~~~~~~----------~~~~~~avn~v~~~------------------ 470 (625)
T KOG1707|consen 424 KVFQCFV---VGPKNCGKSALLQSFLGRS--MSDNNTG----------TTKPRYAVNSVEVK------------------ 470 (625)
T ss_pred eeeeEEE---EcCCcCchHHHHHHHhccc--ccccccc----------CCCCceeeeeeeec------------------
Confidence 4456666 9999999999999997521 1110000 00000111111111
Q ss_pred CCceeEEEeCCCCC-CCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHH-HhcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA-LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~-~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~-~~~~~p~ivviNK~D~~~ 156 (584)
+..+.+.+-|.+-. -+|..+-. ..||.+.++.|.+......-. .+.... .....|+++|..|.|+..
T Consensus 471 g~~k~LiL~ei~~~~~~~l~~ke---~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe 540 (625)
T KOG1707|consen 471 GQQKYLILREIGEDDQDFLTSKE---AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDE 540 (625)
T ss_pred cccceEEEeecCccccccccCcc---ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccch
Confidence 11333444444432 23333333 789999999999855443322 222111 236889999999999983
No 494
>PRK00098 GTPase RsgA; Reviewed
Probab=92.53 E-value=0.16 Score=52.25 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=33.5
Q ss_pred HhhhcCeEEEEEeCCCCCchh--HHHHHHHHHhcCCceEEEEecCccc
Q 007929 110 ALRITDGALVVVDCIEGVCVQ--TETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 110 ~l~~~D~ailvvda~~g~~~~--t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
.++.+|.+++|+|+.+..... -.+.+..+...++|+++++||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 368899999999997543221 1334444556789999999999985
No 495
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.52 E-value=0.092 Score=50.64 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=17.5
Q ss_pred eEEecccccCCCCChhHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSL 31 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~L 31 (584)
.|+| +|++|||||||+++|
T Consensus 30 vv~i---iGpSGSGKSTlLRcl 48 (240)
T COG1126 30 VVVI---IGPSGSGKSTLLRCL 48 (240)
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 5777 999999999999999
No 496
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.48 E-value=0.1 Score=49.24 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=19.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.+++ +|+.|+|||||++.++...|
T Consensus 23 ~~~l---~G~nG~GKSTLl~~il~~~G 46 (176)
T cd03238 23 LVVV---TGVSGSGKSTLVNEGLYASG 46 (176)
T ss_pred EEEE---ECCCCCCHHHHHHHHhhcCC
Confidence 5677 99999999999999875333
No 497
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.39 E-value=0.12 Score=48.92 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+|+| +|++||||||++..|....+
T Consensus 2 riii---lG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILI---LGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5778 99999999999999976644
No 498
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.37 E-value=0.1 Score=51.70 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=25.4
Q ss_pred cccceeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 4 YCFTTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 4 ~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.+...++++| +|+.|||||||+-.||+..+
T Consensus 9 l~~~~fr~vi---IG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 9 LLKDPFRMVI---IGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred hcCCCceEEE---ECCCCCCHHHHHHHHHHhhc
Confidence 4556789999 99999999999999987643
No 499
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.34 E-value=0.35 Score=48.37 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
-+|| +|+.|+|||||+.+|.
T Consensus 30 i~~i---iGpNG~GKSTLLk~l~ 49 (258)
T COG1120 30 ITGI---LGPNGSGKSTLLKCLA 49 (258)
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 3566 9999999999999994
No 500
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=92.22 E-value=0.67 Score=39.94 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=48.2
Q ss_pred ecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecC-------CccccCccc--CCCEEEEE
Q 007929 377 PASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGK-------KQETVEDVP--CGNTVAMV 447 (584)
Q Consensus 377 ~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~-------~~~~v~ea~--AGdIvav~ 447 (584)
.+...|. .+-+=||+|+|+.||.|.+.+.+ +- ...||..|+.+.+. +...++++. +|=-+...
T Consensus 10 ~~~G~G~-t~dvIl~~GtL~~GD~Iv~g~~~---Gp----i~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 10 EEEGLGT-TIDVILYDGTLREGDTIVVCGLN---GP----IVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred EcCCCce-EEEEEEECCeEecCCEEEEccCC---CC----ceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 3556677 88888999999999999875432 21 11378888877774 345777777 66667777
Q ss_pred ccCcc
Q 007929 448 GLDQY 452 (584)
Q Consensus 448 gl~~~ 452 (584)
||++.
T Consensus 82 gL~~v 86 (110)
T cd03703 82 DLEKA 86 (110)
T ss_pred CCccc
Confidence 78775
Done!