Query 007929
Match_columns 584
No_of_seqs 246 out of 2383
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 5.8E-99 2E-103 869.1 58.3 572 6-583 17-590 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 1.4E-87 4.9E-92 763.9 38.7 476 6-564 11-501 (709)
3 3vqt_A RF-3, peptide chain rel 100.0 6.1E-82 2.1E-86 695.2 32.0 453 6-569 29-506 (548)
4 2rdo_7 EF-G, elongation factor 100.0 2.4E-79 8.1E-84 693.6 52.6 495 6-583 8-522 (704)
5 2xex_A Elongation factor G; GT 100.0 8.6E-77 2.9E-81 672.2 42.8 472 6-571 8-497 (693)
6 1dar_A EF-G, elongation factor 100.0 8.1E-77 2.8E-81 672.2 34.8 471 5-571 9-498 (691)
7 3j25_A Tetracycline resistance 100.0 5.8E-79 2E-83 684.5 15.7 419 8-572 2-435 (638)
8 2dy1_A Elongation factor G; tr 100.0 2.1E-69 7.3E-74 609.6 43.0 452 1-570 1-470 (665)
9 2h5e_A Peptide chain release f 100.0 8.6E-67 2.9E-71 572.4 33.2 444 6-563 11-477 (529)
10 3tr5_A RF-3, peptide chain rel 100.0 7.5E-66 2.6E-70 564.3 30.4 443 6-563 11-476 (528)
11 2ywe_A GTP-binding protein LEP 100.0 3.1E-59 1.1E-63 515.9 36.2 365 6-562 4-380 (600)
12 3cb4_D GTP-binding protein LEP 100.0 7.6E-58 2.6E-62 505.9 34.0 366 7-564 3-380 (599)
13 3j2k_7 ERF3, eukaryotic polype 100.0 1.3E-31 4.4E-36 288.2 26.8 287 6-463 15-327 (439)
14 2c78_A Elongation factor TU-A; 100.0 5.4E-31 1.9E-35 281.0 22.7 294 7-463 10-308 (405)
15 1g7s_A Translation initiation 100.0 1.3E-31 4.4E-36 296.7 18.3 328 7-503 4-373 (594)
16 1d2e_A Elongation factor TU (E 100.0 1.8E-31 6.3E-36 283.8 17.9 284 7-463 2-290 (397)
17 1jny_A EF-1-alpha, elongation 100.0 1.1E-31 3.9E-36 288.7 14.5 285 7-463 5-317 (435)
18 3mca_A HBS1, elongation factor 100.0 1.3E-30 4.4E-35 289.6 12.2 287 6-463 175-489 (592)
19 3p26_A Elongation factor 1 alp 100.0 4.3E-29 1.5E-33 272.1 23.0 296 7-463 32-362 (483)
20 1r5b_A Eukaryotic peptide chai 100.0 2.4E-29 8.2E-34 272.6 19.7 288 6-463 41-356 (467)
21 3avx_A Elongation factor TS, e 100.0 9.6E-29 3.3E-33 283.9 21.1 283 7-463 295-581 (1289)
22 1f60_A Elongation factor EEF1A 100.0 2.3E-28 7.8E-33 264.3 21.6 297 6-463 5-328 (458)
23 2elf_A Protein translation elo 100.0 1.6E-28 5.4E-33 258.0 19.2 118 10-182 23-142 (370)
24 1kk1_A EIF2gamma; initiation o 100.0 1.3E-27 4.3E-32 255.4 25.6 135 6-156 8-151 (410)
25 1zun_B Sulfate adenylate trans 100.0 8.3E-28 2.8E-32 258.6 22.5 285 7-463 23-326 (434)
26 3izq_1 HBS1P, elongation facto 100.0 2E-28 6.7E-33 272.8 17.8 295 6-463 165-496 (611)
27 1wb1_A Translation elongation 99.9 1.8E-27 6E-32 258.7 14.4 139 6-182 17-155 (482)
28 1s0u_A EIF-2-gamma, translatio 99.9 4.1E-26 1.4E-30 243.4 21.0 133 7-156 7-149 (408)
29 3sjy_A Translation initiation 99.9 2E-25 6.8E-30 237.8 22.1 136 6-156 6-143 (403)
30 1zo1_I IF2, translation initia 99.9 1.1E-27 3.8E-32 259.1 3.0 302 7-514 3-335 (501)
31 3izy_P Translation initiation 99.9 1.4E-26 4.8E-31 252.5 3.5 116 7-156 3-118 (537)
32 3e3x_A BIPA; MCSG,PSI2, struct 99.8 1.7E-20 5.8E-25 189.7 11.4 107 445-559 2-119 (332)
33 1wf3_A GTP-binding protein; GT 99.6 8.8E-16 3E-20 156.7 13.9 117 6-156 5-131 (301)
34 1ega_A Protein (GTP-binding pr 99.6 2.1E-15 7.1E-20 154.0 15.1 115 6-155 6-129 (301)
35 2hjg_A GTP-binding protein ENG 99.6 1.3E-15 4.5E-20 163.5 11.5 116 7-156 174-300 (436)
36 2lkc_A Translation initiation 99.6 9.4E-16 3.2E-20 142.8 8.6 119 3-156 3-121 (178)
37 3iev_A GTP-binding protein ERA 99.6 1.1E-14 3.9E-19 149.0 14.9 116 7-155 9-135 (308)
38 4dcu_A GTP-binding protein ENG 99.6 7.3E-15 2.5E-19 158.7 12.4 116 7-156 194-320 (456)
39 2xtp_A GTPase IMAP family memb 99.6 1.1E-14 3.7E-19 145.2 12.3 116 7-156 21-153 (260)
40 2dyk_A GTP-binding protein; GT 99.6 2.7E-14 9.2E-19 130.4 12.8 114 9-156 2-122 (161)
41 3k53_A Ferrous iron transport 99.5 2.8E-14 9.5E-19 143.4 13.2 112 7-155 2-122 (271)
42 1ky3_A GTP-binding protein YPT 99.5 1.9E-14 6.6E-19 134.1 11.1 124 1-156 1-132 (182)
43 3lxw_A GTPase IMAP family memb 99.5 7.1E-14 2.4E-18 138.5 14.6 117 6-156 19-153 (247)
44 4dhe_A Probable GTP-binding pr 99.5 2.5E-14 8.7E-19 138.6 10.5 117 7-156 28-158 (223)
45 3tw8_B RAS-related protein RAB 99.5 2.9E-14 9.8E-19 132.8 10.2 123 1-156 2-127 (181)
46 2bme_A RAB4A, RAS-related prot 99.5 8.2E-14 2.8E-18 130.7 12.9 122 1-155 3-128 (186)
47 1z0f_A RAB14, member RAS oncog 99.5 1.3E-13 4.5E-18 128.0 14.1 117 6-155 13-133 (179)
48 3t1o_A Gliding protein MGLA; G 99.5 4.4E-14 1.5E-18 133.5 10.3 129 6-156 12-149 (198)
49 2fu5_C RAS-related protein RAB 99.5 3.2E-14 1.1E-18 133.2 9.2 122 1-155 1-126 (183)
50 2g6b_A RAS-related protein RAB 99.5 6.4E-14 2.2E-18 130.5 11.1 121 4-156 6-130 (180)
51 1r8s_A ADP-ribosylation factor 99.5 2.6E-13 8.8E-18 124.4 14.6 110 9-156 1-115 (164)
52 2hxs_A RAB-26, RAS-related pro 99.5 1.8E-13 6E-18 127.3 13.5 119 6-156 4-129 (178)
53 1ek0_A Protein (GTP-binding pr 99.5 1.8E-13 6.3E-18 125.8 13.4 117 7-156 2-122 (170)
54 3qq5_A Small GTP-binding prote 99.5 1.6E-14 5.3E-19 153.6 7.0 116 6-156 32-154 (423)
55 2il1_A RAB12; G-protein, GDP, 99.5 7.6E-14 2.6E-18 132.3 11.0 118 6-156 24-145 (192)
56 1vg8_A RAS-related protein RAB 99.5 6.9E-14 2.4E-18 133.6 10.8 122 1-155 1-130 (207)
57 2efe_B Small GTP-binding prote 99.5 1.3E-13 4.3E-18 128.6 12.2 117 6-155 10-130 (181)
58 1x3s_A RAS-related protein RAB 99.5 1.3E-13 4.5E-18 130.1 12.4 118 5-155 12-134 (195)
59 1mky_A Probable GTP-binding pr 99.5 9.7E-14 3.3E-18 149.1 12.8 112 10-155 3-123 (439)
60 1upt_A ARL1, ADP-ribosylation 99.5 2.4E-13 8.1E-18 125.4 13.6 113 6-156 5-122 (171)
61 1r2q_A RAS-related protein RAB 99.5 2.1E-13 7.2E-18 125.3 13.1 118 6-156 4-125 (170)
62 3tkl_A RAS-related protein RAB 99.5 5E-14 1.7E-18 133.3 8.9 118 6-156 14-135 (196)
63 4bas_A ADP-ribosylation factor 99.5 1.8E-13 6.3E-18 129.7 12.7 115 6-156 15-141 (199)
64 3kkq_A RAS-related protein M-R 99.5 2.4E-13 8.3E-18 127.2 13.2 116 5-155 15-136 (183)
65 1u8z_A RAS-related protein RAL 99.5 3.9E-13 1.3E-17 123.2 14.3 116 7-156 3-123 (168)
66 1wms_A RAB-9, RAB9, RAS-relate 99.5 1.9E-13 6.4E-18 127.0 12.4 117 6-155 5-129 (177)
67 2p5s_A RAS and EF-hand domain 99.5 1E-13 3.6E-18 132.0 10.7 117 6-155 26-146 (199)
68 1zj6_A ADP-ribosylation factor 99.5 3.5E-13 1.2E-17 126.8 13.9 113 6-156 14-131 (187)
69 2fg5_A RAB-22B, RAS-related pr 99.5 1.1E-13 3.6E-18 131.2 10.3 117 6-155 21-141 (192)
70 2gj8_A MNME, tRNA modification 99.5 2E-13 6.7E-18 127.3 11.9 115 7-155 3-128 (172)
71 2bcg_Y Protein YP2, GTP-bindin 99.5 6E-14 2.1E-18 134.3 8.6 123 1-156 1-127 (206)
72 1kao_A RAP2A; GTP-binding prot 99.5 5.5E-13 1.9E-17 122.0 14.7 114 7-155 2-121 (167)
73 2fh5_B SR-beta, signal recogni 99.5 5.7E-13 2E-17 128.2 15.4 131 6-175 5-145 (214)
74 1zd9_A ADP-ribosylation factor 99.5 3.1E-13 1.1E-17 127.5 13.2 114 6-156 20-138 (188)
75 3bc1_A RAS-related protein RAB 99.5 2.6E-13 8.8E-18 127.7 12.5 126 5-156 8-141 (195)
76 1zbd_A Rabphilin-3A; G protein 99.5 1.3E-13 4.6E-18 131.4 10.6 118 6-156 6-127 (203)
77 2hup_A RAS-related protein RAB 99.5 3.3E-13 1.1E-17 129.0 13.4 118 6-156 27-148 (201)
78 1m2o_B GTP-binding protein SAR 99.5 2.5E-13 8.4E-18 128.7 12.3 113 6-156 21-138 (190)
79 1g16_A RAS-related protein SEC 99.5 1.3E-13 4.6E-18 126.8 10.2 116 7-155 2-121 (170)
80 2hjg_A GTP-binding protein ENG 99.5 4.4E-14 1.5E-18 151.7 7.9 113 9-155 4-124 (436)
81 2gf9_A RAS-related protein RAB 99.5 2.4E-13 8.2E-18 128.2 12.1 118 6-156 20-141 (189)
82 2y8e_A RAB-protein 6, GH09086P 99.5 3.9E-13 1.3E-17 124.8 13.3 117 7-156 13-133 (179)
83 1c1y_A RAS-related protein RAP 99.5 7.3E-13 2.5E-17 121.4 14.8 115 7-156 2-122 (167)
84 3clv_A RAB5 protein, putative; 99.5 2.2E-13 7.6E-18 129.1 11.5 66 89-154 92-159 (208)
85 1z2a_A RAS-related protein RAB 99.5 1.8E-13 6.1E-18 125.7 10.5 117 7-156 4-123 (168)
86 4dsu_A GTPase KRAS, isoform 2B 99.5 2.2E-13 7.6E-18 127.7 11.3 115 7-155 3-122 (189)
87 2a9k_A RAS-related protein RAL 99.5 8.1E-13 2.8E-17 123.5 15.1 117 6-156 16-137 (187)
88 1z0j_A RAB-22, RAS-related pro 99.5 2E-13 6.9E-18 125.6 10.6 118 6-156 4-125 (170)
89 2fn4_A P23, RAS-related protei 99.5 2.4E-13 8.1E-18 126.5 11.2 121 1-156 2-128 (181)
90 2h57_A ADP-ribosylation factor 99.5 2.2E-13 7.5E-18 128.6 11.0 115 6-156 19-140 (190)
91 2oil_A CATX-8, RAS-related pro 99.5 1.8E-13 6.3E-18 129.4 10.4 118 6-156 23-144 (193)
92 1f6b_A SAR1; gtpases, N-termin 99.5 1.9E-13 6.5E-18 130.4 10.4 113 6-156 23-140 (198)
93 1mky_A Probable GTP-binding pr 99.5 3.6E-13 1.2E-17 144.7 13.8 115 7-155 179-305 (439)
94 3llu_A RAS-related GTP-binding 99.5 8.1E-13 2.8E-17 125.6 14.7 118 6-156 18-143 (196)
95 2a5j_A RAS-related protein RAB 99.5 3.1E-13 1.1E-17 127.7 11.7 117 6-155 19-139 (191)
96 3pqc_A Probable GTP-binding pr 99.4 4.4E-13 1.5E-17 126.4 12.5 113 7-156 22-147 (195)
97 2erx_A GTP-binding protein DI- 99.4 3E-13 1E-17 124.6 11.1 115 7-156 2-123 (172)
98 1svi_A GTP-binding protein YSX 99.4 3.4E-13 1.2E-17 127.5 11.6 114 7-156 22-148 (195)
99 3i8s_A Ferrous iron transport 99.4 2.1E-13 7.1E-18 137.2 10.6 112 7-155 2-125 (274)
100 2h17_A ADP-ribosylation factor 99.4 3.2E-13 1.1E-17 126.5 11.1 113 6-156 19-136 (181)
101 4dcu_A GTP-binding protein ENG 99.4 6E-14 2.1E-18 151.5 7.0 116 6-155 21-144 (456)
102 2b6h_A ADP-ribosylation factor 99.4 3.6E-13 1.2E-17 127.7 11.6 113 6-156 27-144 (192)
103 2ce2_X GTPase HRAS; signaling 99.4 5E-13 1.7E-17 122.0 12.1 114 8-156 3-122 (166)
104 3dz8_A RAS-related protein RAB 99.4 2.1E-13 7.3E-18 128.9 9.9 119 5-156 20-142 (191)
105 3def_A T7I23.11 protein; chlor 99.4 6.4E-13 2.2E-17 132.7 13.6 115 7-155 35-164 (262)
106 2nzj_A GTP-binding protein REM 99.4 3E-13 1E-17 125.2 10.4 116 7-156 3-125 (175)
107 1ksh_A ARF-like protein 2; sma 99.4 2.8E-13 9.6E-18 127.2 10.3 113 6-156 16-133 (186)
108 1z08_A RAS-related protein RAB 99.4 2.3E-13 7.9E-18 125.4 9.5 118 6-156 4-125 (170)
109 1nrj_B SR-beta, signal recogni 99.4 1.4E-12 4.8E-17 125.9 15.2 130 5-177 9-152 (218)
110 2bov_A RAla, RAS-related prote 99.4 1.4E-12 4.9E-17 124.2 14.9 117 6-156 12-133 (206)
111 3cph_A RAS-related protein SEC 99.4 3.5E-13 1.2E-17 129.3 10.6 117 6-155 18-138 (213)
112 3r7w_A Gtpase1, GTP-binding pr 99.4 9.7E-13 3.3E-17 134.6 14.5 116 8-156 3-129 (307)
113 3l0i_B RAS-related protein RAB 99.4 3E-14 1E-18 135.8 2.9 118 5-155 30-151 (199)
114 1fzq_A ADP-ribosylation factor 99.4 9.7E-13 3.3E-17 123.5 13.2 113 6-156 14-131 (181)
115 2ew1_A RAS-related protein RAB 99.4 4.4E-13 1.5E-17 128.4 11.0 117 6-155 24-144 (201)
116 1mh1_A RAC1; GTP-binding, GTPa 99.4 2.1E-13 7.3E-18 127.5 8.4 115 7-156 4-123 (186)
117 2ged_A SR-beta, signal recogni 99.4 4E-13 1.4E-17 126.9 10.1 129 7-177 47-188 (193)
118 3con_A GTPase NRAS; structural 99.4 1.1E-12 3.9E-17 123.5 13.0 117 6-156 19-140 (190)
119 3t5g_A GTP-binding protein RHE 99.4 4.6E-13 1.6E-17 125.0 10.2 114 7-155 5-124 (181)
120 3iby_A Ferrous iron transport 99.4 3.9E-13 1.3E-17 133.8 10.2 111 9-156 2-124 (256)
121 1z06_A RAS-related protein RAB 99.4 5E-13 1.7E-17 126.0 10.5 118 6-156 18-141 (189)
122 2o52_A RAS-related protein RAB 99.4 3.9E-13 1.3E-17 128.3 9.9 117 6-155 23-143 (200)
123 2wji_A Ferrous iron transport 99.4 7.8E-13 2.7E-17 122.1 11.4 111 8-155 3-121 (165)
124 3gj0_A GTP-binding nuclear pro 99.4 2.3E-13 8E-18 131.8 7.9 118 6-156 13-133 (221)
125 2yc2_C IFT27, small RAB-relate 99.4 3.7E-13 1.3E-17 128.4 8.6 119 6-155 18-145 (208)
126 3q85_A GTP-binding protein REM 99.4 1.4E-12 4.9E-17 120.0 12.3 115 8-155 2-122 (169)
127 2f7s_A C25KG, RAS-related prot 99.4 2.1E-13 7.3E-18 131.5 6.9 128 6-156 23-155 (217)
128 2x77_A ADP-ribosylation factor 99.4 3.4E-13 1.2E-17 127.0 8.2 113 6-156 20-137 (189)
129 2p67_A LAO/AO transport system 99.4 5E-13 1.7E-17 138.7 10.1 179 89-330 148-329 (341)
130 1moz_A ARL1, ADP-ribosylation 99.4 4.7E-13 1.6E-17 125.0 9.0 113 6-156 16-133 (183)
131 3t5d_A Septin-7; GTP-binding p 99.4 2.4E-12 8.1E-17 129.4 14.7 123 7-155 7-157 (274)
132 3cpj_B GTP-binding protein YPT 99.4 6.2E-13 2.1E-17 129.2 10.0 118 6-156 11-132 (223)
133 3gee_A MNME, tRNA modification 99.4 2.8E-13 9.7E-18 146.3 8.1 114 7-156 232-357 (476)
134 1h65_A Chloroplast outer envel 99.4 4.1E-12 1.4E-16 127.4 16.1 115 7-155 38-167 (270)
135 3oes_A GTPase rhebl1; small GT 99.4 1.2E-12 4.1E-17 124.8 11.5 116 6-156 22-143 (201)
136 2atx_A Small GTP binding prote 99.4 1.1E-12 3.7E-17 124.1 10.9 116 6-156 16-136 (194)
137 3geh_A MNME, tRNA modification 99.4 4.8E-13 1.7E-17 143.9 9.4 114 7-156 223-344 (462)
138 3a1s_A Iron(II) transport prot 99.4 1.2E-12 4.2E-17 130.4 11.6 112 7-155 4-123 (258)
139 3q72_A GTP-binding protein RAD 99.4 4.7E-13 1.6E-17 122.9 7.9 113 8-155 2-119 (166)
140 1jwy_B Dynamin A GTPase domain 99.4 1.1E-12 3.7E-17 134.4 11.0 68 89-156 130-212 (315)
141 2wjg_A FEOB, ferrous iron tran 99.4 2E-12 6.7E-17 121.5 11.8 113 7-156 6-126 (188)
142 2gf0_A GTP-binding protein DI- 99.4 1.2E-12 4.1E-17 124.0 10.4 116 6-156 6-128 (199)
143 1xzp_A Probable tRNA modificat 99.4 1E-12 3.5E-17 142.1 11.0 114 7-156 242-364 (482)
144 2gco_A H9, RHO-related GTP-bin 99.4 8.3E-13 2.8E-17 126.0 9.1 117 6-156 23-143 (201)
145 4gzl_A RAS-related C3 botulinu 99.4 6.2E-13 2.1E-17 127.4 8.0 117 6-156 28-148 (204)
146 3lxx_A GTPase IMAP family memb 99.4 1.6E-12 5.6E-17 127.7 11.2 116 7-156 28-159 (239)
147 3bwd_D RAC-like GTP-binding pr 99.4 3.7E-13 1.3E-17 125.6 6.2 116 6-155 6-125 (182)
148 4dkx_A RAS-related protein RAB 99.4 4E-12 1.4E-16 123.2 13.6 124 7-164 12-139 (216)
149 3reg_A RHO-like small GTPase; 99.4 1.4E-12 4.8E-17 123.4 9.8 116 6-156 21-141 (194)
150 1gwn_A RHO-related GTP-binding 99.4 6.6E-13 2.3E-17 127.5 7.4 120 1-155 21-145 (205)
151 2q3h_A RAS homolog gene family 99.4 1.1E-12 3.6E-17 124.9 8.7 117 6-156 18-138 (201)
152 2j0v_A RAC-like GTP-binding pr 99.4 9.6E-13 3.3E-17 126.4 8.4 115 6-155 7-126 (212)
153 2atv_A RERG, RAS-like estrogen 99.4 8.5E-12 2.9E-16 118.3 14.9 115 6-156 26-146 (196)
154 2fv8_A H6, RHO-related GTP-bin 99.4 1E-12 3.6E-17 125.9 8.5 115 7-156 24-143 (207)
155 2qu8_A Putative nucleolar GTP- 99.4 3.9E-12 1.3E-16 124.0 12.6 117 5-156 26-156 (228)
156 2j1l_A RHO-related GTP-binding 99.3 1.1E-12 3.6E-17 126.7 8.2 116 6-156 32-152 (214)
157 1m7b_A RND3/RHOE small GTP-bin 99.3 9.7E-13 3.3E-17 123.6 7.7 115 6-155 5-124 (184)
158 4djt_A GTP-binding nuclear pro 99.3 5.7E-13 1.9E-17 128.6 6.0 118 6-155 9-130 (218)
159 3c5c_A RAS-like protein 12; GD 99.3 7.2E-12 2.5E-16 118.1 13.2 114 6-155 19-140 (187)
160 3q3j_B RHO-related GTP-binding 99.3 3.8E-12 1.3E-16 122.9 11.4 116 6-156 25-145 (214)
161 3o47_A ADP-ribosylation factor 99.3 2.7E-12 9.2E-17 132.5 10.9 112 7-156 164-280 (329)
162 3ihw_A Centg3; RAS, centaurin, 99.3 1E-11 3.5E-16 116.9 13.5 110 6-155 18-132 (184)
163 2iwr_A Centaurin gamma 1; ANK 99.3 1.4E-11 4.7E-16 114.6 13.5 109 6-155 5-121 (178)
164 3cbq_A GTP-binding protein REM 99.3 8.1E-12 2.8E-16 118.8 11.7 117 6-155 21-143 (195)
165 3lvq_E ARF-GAP with SH3 domain 99.3 7.3E-12 2.5E-16 136.6 12.2 113 6-156 320-437 (497)
166 2qpt_A EH domain-containing pr 99.3 8.6E-12 2.9E-16 137.2 11.7 67 90-156 154-232 (550)
167 3th5_A RAS-related C3 botulinu 98.9 3.8E-13 1.3E-17 128.6 0.0 117 6-156 28-148 (204)
168 3b1v_A Ferrous iron uptake tra 99.3 7E-12 2.4E-16 125.8 9.1 111 7-155 2-120 (272)
169 2aka_B Dynamin-1; fusion prote 99.3 1.5E-11 5.2E-16 124.7 11.7 68 89-156 124-206 (299)
170 2zej_A Dardarin, leucine-rich 99.2 1.5E-11 5.2E-16 115.4 6.5 120 8-155 2-125 (184)
171 2cxx_A Probable GTP-binding pr 99.2 5.3E-11 1.8E-15 111.6 10.1 109 9-156 2-136 (190)
172 2g3y_A GTP-binding protein GEM 99.2 6.6E-11 2.3E-15 114.2 9.9 118 6-155 35-158 (211)
173 2wkq_A NPH1-1, RAS-related C3 99.2 3.8E-11 1.3E-15 123.3 8.0 116 6-155 153-272 (332)
174 2j69_A Bacterial dynamin-like 99.2 7.2E-11 2.5E-15 133.4 11.0 67 90-156 174-244 (695)
175 2cjw_A GTP-binding protein GEM 99.1 1.6E-10 5.4E-15 109.5 10.6 118 6-155 4-127 (192)
176 2f9l_A RAB11B, member RAS onco 99.1 1.1E-10 3.8E-15 110.9 9.3 116 7-155 4-123 (199)
177 3r7w_B Gtpase2, GTP-binding pr 99.1 1.9E-10 6.4E-15 117.3 11.2 111 10-156 1-120 (331)
178 1lnz_A SPO0B-associated GTP-bi 99.1 1.1E-10 3.9E-15 120.7 8.1 112 10-155 160-287 (342)
179 3t34_A Dynamin-related protein 99.1 2.7E-10 9.3E-15 119.0 10.6 68 89-156 135-217 (360)
180 2e87_A Hypothetical protein PH 99.1 4.9E-10 1.7E-14 116.9 12.0 116 6-156 165-294 (357)
181 2qag_A Septin-2, protein NEDD5 99.1 4.2E-10 1.4E-14 117.5 11.4 125 7-156 36-188 (361)
182 2x2e_A Dynamin-1; nitration, h 99.1 4.7E-10 1.6E-14 116.8 11.5 68 89-156 129-211 (353)
183 2qtf_A Protein HFLX, GTP-bindi 99.1 6.8E-10 2.3E-14 115.9 12.3 113 9-156 179-306 (364)
184 1pui_A ENGB, probable GTP-bind 99.1 6.2E-10 2.1E-14 106.4 10.9 114 7-156 25-151 (210)
185 3dpu_A RAB family protein; roc 99.0 1.8E-10 6E-15 126.8 7.5 124 6-156 39-164 (535)
186 1oix_A RAS-related protein RAB 99.0 6.5E-10 2.2E-14 105.1 9.8 118 6-156 27-148 (191)
187 3p32_A Probable GTPase RV1496/ 99.0 1E-09 3.5E-14 114.4 11.5 62 88-156 170-231 (355)
188 1wxq_A GTP-binding protein; st 99.0 4.1E-10 1.4E-14 118.8 8.1 38 89-126 70-114 (397)
189 4a9a_A Ribosome-interacting GT 98.9 4.3E-09 1.5E-13 109.7 9.5 113 8-156 72-196 (376)
190 3zvr_A Dynamin-1; hydrolase, D 98.9 6.7E-09 2.3E-13 116.9 11.5 68 89-156 149-231 (772)
191 2j37_W Signal recognition part 98.7 4.1E-09 1.4E-13 114.0 4.9 65 88-155 182-253 (504)
192 2wsm_A Hydrogenase expression/ 98.7 5E-09 1.7E-13 101.0 4.3 136 7-155 29-167 (221)
193 1jal_A YCHF protein; nucleotid 98.7 2.7E-08 9.2E-13 103.1 10.1 98 9-125 3-108 (363)
194 3c5h_A Glucocorticoid receptor 98.7 5.1E-09 1.7E-13 103.9 3.8 43 113-155 162-211 (255)
195 1udx_A The GTP-binding protein 98.7 9.1E-08 3.1E-12 101.3 12.7 112 10-156 159-283 (416)
196 1yrb_A ATP(GTP)binding protein 98.7 2.9E-08 9.8E-13 98.3 8.2 67 89-156 108-185 (262)
197 2xxa_A Signal recognition part 98.7 3.6E-08 1.2E-12 105.0 8.5 65 88-155 182-253 (433)
198 2www_A Methylmalonic aciduria 98.6 2.4E-08 8.2E-13 103.7 5.5 60 89-155 166-225 (349)
199 3kl4_A SRP54, signal recogniti 98.6 4.5E-07 1.5E-11 96.2 14.3 68 86-155 176-251 (433)
200 4fid_A G protein alpha subunit 98.6 1.2E-07 4E-12 97.5 8.6 67 89-155 160-241 (340)
201 3sop_A Neuronal-specific septi 98.5 4.7E-07 1.6E-11 90.4 12.2 124 8-156 2-154 (270)
202 2qag_C Septin-7; cell cycle, c 98.5 4.5E-07 1.5E-11 96.0 12.4 124 7-156 30-181 (418)
203 1cip_A Protein (guanine nucleo 98.5 8.4E-08 2.9E-12 99.5 6.6 67 89-155 192-273 (353)
204 2qnr_A Septin-2, protein NEDD5 98.5 7.5E-07 2.6E-11 90.4 12.5 125 7-156 17-169 (301)
205 2dby_A GTP-binding protein; GD 98.5 5.9E-07 2E-11 93.5 11.1 97 9-126 2-112 (368)
206 3ohm_A Guanine nucleotide-bind 98.4 5.5E-07 1.9E-11 92.1 8.2 68 89-156 166-248 (327)
207 2qag_B Septin-6, protein NEDD5 98.3 1.5E-06 5.1E-11 91.7 11.1 40 116-156 151-190 (427)
208 3ec1_A YQEH GTPase; atnos1, at 98.3 7E-08 2.4E-12 100.9 0.2 117 8-156 162-288 (369)
209 2ohf_A Protein OLA1, GTP-bindi 98.3 7.1E-07 2.4E-11 93.4 7.0 100 7-125 21-128 (396)
210 3h2y_A GTPase family protein; 98.2 2.2E-07 7.4E-12 97.1 1.3 116 9-156 161-287 (368)
211 2qm8_A GTPase/ATPase; G protei 98.2 2.6E-07 8.9E-12 95.3 1.6 60 89-155 147-206 (337)
212 2v3c_C SRP54, signal recogniti 98.2 5.1E-06 1.8E-10 88.3 10.5 65 88-155 179-251 (432)
213 1j8m_F SRP54, signal recogniti 98.2 4.5E-06 1.5E-10 84.4 9.1 65 88-155 179-252 (297)
214 3dm5_A SRP54, signal recogniti 98.1 5E-06 1.7E-10 88.1 9.4 65 88-155 181-252 (443)
215 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 9.6E-06 3.3E-10 85.0 9.8 101 7-125 19-127 (392)
216 3e1y_E Eukaryotic peptide chai 98.0 1.6E-05 5.4E-10 75.8 8.6 84 364-463 3-89 (204)
217 4dzz_A Plasmid partitioning pr 97.9 2.3E-05 7.9E-10 74.0 8.6 64 89-155 75-143 (206)
218 1f5n_A Interferon-induced guan 97.9 1E-05 3.6E-10 88.9 5.8 105 5-138 35-145 (592)
219 2hf9_A Probable hydrogenase ni 97.8 2.4E-05 8.3E-10 75.1 5.9 131 7-155 37-177 (226)
220 1zcb_A G alpha I/13; GTP-bindi 97.7 1.6E-05 5.6E-10 82.5 4.4 67 89-155 200-281 (362)
221 1zu4_A FTSY; GTPase, signal re 97.7 6.9E-05 2.4E-09 76.5 8.1 65 88-155 190-267 (320)
222 1azs_C GS-alpha; complex (lyas 97.6 5.6E-05 1.9E-09 79.3 6.7 67 89-155 216-297 (402)
223 1tq4_A IIGP1, interferon-induc 97.6 0.00014 4.7E-09 76.7 8.8 117 7-156 68-189 (413)
224 2ffh_A Protein (FFH); SRP54, s 97.5 8E-05 2.7E-09 78.8 6.4 65 88-155 179-250 (425)
225 1puj_A YLQF, conserved hypothe 97.5 5.3E-05 1.8E-09 75.9 4.7 26 7-35 119-144 (282)
226 3cwq_A Para family chromosome 97.5 4E-05 1.4E-09 73.2 3.6 65 89-155 67-133 (209)
227 3szr_A Interferon-induced GTP- 97.4 0.00043 1.5E-08 76.8 10.7 67 90-156 147-228 (608)
228 2yhs_A FTSY, cell division pro 97.4 0.00025 8.6E-09 75.9 7.9 65 89-155 375-451 (503)
229 2xtz_A Guanine nucleotide-bind 97.4 0.0001 3.4E-09 76.3 4.5 68 88-155 181-263 (354)
230 3e70_C DPA, signal recognition 97.4 0.00015 5.1E-09 74.2 5.5 65 89-155 211-281 (328)
231 3kjh_A CO dehydrogenase/acetyl 97.3 0.00014 4.9E-09 70.6 3.8 65 88-154 130-195 (254)
232 3cnl_A YLQF, putative uncharac 97.2 0.00012 4.3E-09 72.4 3.2 23 9-34 100-122 (262)
233 1wcv_1 SOJ, segregation protei 97.2 0.0016 5.6E-08 63.8 10.5 66 88-155 110-182 (257)
234 1rj9_A FTSY, signal recognitio 97.1 0.0013 4.4E-08 66.5 9.3 65 89-155 184-260 (304)
235 3end_A Light-independent proto 97.1 0.00085 2.9E-08 67.7 8.0 67 88-155 155-226 (307)
236 1vma_A Cell division protein F 97.1 0.00032 1.1E-08 71.0 4.8 64 89-155 186-262 (306)
237 1ls1_A Signal recognition part 97.1 0.0014 4.9E-08 65.8 9.0 64 89-155 180-250 (295)
238 3k9g_A PF-32 protein; ssgcid, 96.9 0.0013 4.5E-08 64.8 7.4 66 88-155 143-210 (267)
239 2px0_A Flagellar biosynthesis 96.9 0.00064 2.2E-08 68.5 4.9 64 89-155 182-252 (296)
240 1u0l_A Probable GTPase ENGC; p 96.9 0.00039 1.3E-08 70.2 3.1 63 91-155 64-128 (301)
241 1puj_A YLQF, conserved hypothe 96.6 0.0019 6.7E-08 64.4 5.4 61 94-156 3-64 (282)
242 3q5d_A Atlastin-1; G protein, 96.5 0.0079 2.7E-07 63.8 9.9 25 7-34 66-90 (447)
243 3b9q_A Chloroplast SRP recepto 96.4 0.0072 2.5E-07 60.9 8.1 64 90-155 184-259 (302)
244 2ph1_A Nucleotide-binding prot 96.0 0.015 5.2E-07 56.9 8.1 67 88-154 127-194 (262)
245 3cnl_A YLQF, putative uncharac 95.8 0.0046 1.6E-07 61.0 3.7 55 98-156 5-60 (262)
246 2og2_A Putative signal recogni 95.8 0.013 4.6E-07 60.3 7.2 64 90-155 241-316 (359)
247 2yv5_A YJEQ protein; hydrolase 95.5 0.0056 1.9E-07 61.7 2.9 56 100-155 66-123 (302)
248 3l82_B F-box only protein 4; T 95.4 0.033 1.1E-06 52.7 7.5 72 90-164 96-182 (227)
249 2oze_A ORF delta'; para, walke 95.4 0.044 1.5E-06 54.5 8.9 66 88-155 153-225 (298)
250 1g3q_A MIND ATPase, cell divis 95.1 0.022 7.6E-07 54.5 5.6 66 88-155 110-176 (237)
251 3la6_A Tyrosine-protein kinase 95.1 0.032 1.1E-06 55.7 6.8 66 89-155 201-267 (286)
252 1hyq_A MIND, cell division inh 95.0 0.023 8E-07 55.4 5.5 65 89-155 110-175 (263)
253 3bfv_A CAPA1, CAPB2, membrane 94.8 0.045 1.6E-06 54.0 7.1 66 89-155 191-257 (271)
254 3ec1_A YQEH GTPase; atnos1, at 94.5 0.031 1.1E-06 57.9 5.3 62 92-156 51-112 (369)
255 3cio_A ETK, tyrosine-protein k 94.5 0.077 2.6E-06 53.2 7.9 66 89-155 213-279 (299)
256 1xe1_A Hypothetical protein PF 94.3 0.14 4.7E-06 43.3 7.7 50 382-447 48-97 (116)
257 3ea0_A ATPase, para family; al 94.2 0.072 2.5E-06 51.1 6.8 65 89-155 118-185 (245)
258 1t9h_A YLOQ, probable GTPase E 94.0 0.023 7.8E-07 57.2 2.8 21 10-33 175-195 (307)
259 3fgn_A Dethiobiotin synthetase 93.5 0.51 1.7E-05 45.9 11.4 66 88-153 125-197 (251)
260 1t9h_A YLOQ, probable GTPase E 93.5 0.064 2.2E-06 54.0 5.0 48 109-156 82-131 (307)
261 1c9k_A COBU, adenosylcobinamid 93.4 0.12 4.1E-06 47.6 6.4 48 134-185 118-165 (180)
262 3q9l_A Septum site-determining 93.4 0.075 2.6E-06 51.4 5.3 65 89-155 113-186 (260)
263 1bif_A 6-phosphofructo-2-kinas 93.2 0.057 1.9E-06 57.8 4.3 25 7-34 38-62 (469)
264 3l2o_B F-box only protein 4; s 93.1 0.15 5E-06 50.6 6.8 59 98-156 195-262 (312)
265 2yv5_A YJEQ protein; hydrolase 93.0 0.065 2.2E-06 53.8 4.3 20 10-32 167-186 (302)
266 1byi_A Dethiobiotin synthase; 92.8 0.29 9.8E-06 46.1 8.3 67 89-155 108-180 (224)
267 1kgd_A CASK, peripheral plasma 92.8 0.052 1.8E-06 49.8 2.9 23 10-35 7-29 (180)
268 1ye8_A Protein THEP1, hypothet 92.7 0.06 2E-06 49.6 3.1 24 10-36 2-25 (178)
269 1knq_A Gluconate kinase; ALFA/ 92.5 0.08 2.8E-06 48.0 3.8 26 8-36 8-33 (175)
270 1lvg_A Guanylate kinase, GMP k 92.5 0.058 2E-06 50.4 2.9 22 10-34 6-27 (198)
271 3c8u_A Fructokinase; YP_612366 92.1 0.073 2.5E-06 50.0 3.0 24 8-34 22-45 (208)
272 3a00_A Guanylate kinase, GMP k 92.0 0.074 2.5E-06 49.0 2.9 22 11-35 4-25 (186)
273 1znw_A Guanylate kinase, GMP k 92.0 0.075 2.6E-06 49.9 2.9 22 10-34 22-43 (207)
274 3tr0_A Guanylate kinase, GMP k 92.0 0.076 2.6E-06 49.4 2.9 23 10-35 9-31 (205)
275 3fwy_A Light-independent proto 91.7 0.25 8.6E-06 49.8 6.6 36 88-124 162-197 (314)
276 2xj4_A MIPZ; replication, cell 91.5 0.099 3.4E-06 51.8 3.4 35 89-125 103-137 (286)
277 1htw_A HI0065; nucleotide-bind 91.5 0.096 3.3E-06 47.2 2.9 23 10-35 35-57 (158)
278 1z6g_A Guanylate kinase; struc 91.5 0.091 3.1E-06 49.9 2.9 23 10-35 25-47 (218)
279 1s96_A Guanylate kinase, GMP k 91.2 0.1 3.4E-06 49.8 2.9 23 10-35 18-40 (219)
280 4gp7_A Metallophosphoesterase; 91.1 0.097 3.3E-06 47.6 2.6 20 10-32 11-30 (171)
281 3lw7_A Adenylate kinase relate 91.0 0.12 4.1E-06 46.2 3.2 23 10-36 3-25 (179)
282 1zp6_A Hypothetical protein AT 91.0 0.093 3.2E-06 48.2 2.4 21 10-33 11-31 (191)
283 4eun_A Thermoresistant glucoki 91.0 0.12 4.1E-06 48.2 3.2 25 10-37 31-55 (200)
284 4ido_A Atlastin-1; GTPase, GTP 91.0 0.7 2.4E-05 48.7 9.3 25 7-34 66-90 (457)
285 3tau_A Guanylate kinase, GMP k 90.9 0.11 3.9E-06 48.8 2.9 23 10-35 10-32 (208)
286 1kag_A SKI, shikimate kinase I 90.9 0.13 4.4E-06 46.3 3.2 24 10-36 6-29 (173)
287 3ney_A 55 kDa erythrocyte memb 90.9 0.12 4.1E-06 48.4 3.0 25 9-36 20-44 (197)
288 3fkq_A NTRC-like two-domain pr 90.7 0.27 9.2E-06 50.7 5.8 35 89-125 259-293 (373)
289 3kb2_A SPBC2 prophage-derived 90.6 0.14 4.8E-06 45.9 3.2 24 10-36 3-26 (173)
290 3asz_A Uridine kinase; cytidin 90.6 0.12 3.9E-06 48.5 2.7 23 9-34 7-29 (211)
291 1np6_A Molybdopterin-guanine d 90.6 0.14 4.7E-06 47.0 3.1 22 10-34 8-29 (174)
292 2wwf_A Thymidilate kinase, put 90.5 0.14 4.7E-06 47.8 3.2 31 1-34 3-33 (212)
293 1ex7_A Guanylate kinase; subst 90.4 0.14 4.7E-06 47.5 3.0 23 10-35 3-25 (186)
294 2j41_A Guanylate kinase; GMP, 90.4 0.14 4.7E-06 47.6 3.0 22 10-34 8-29 (207)
295 3h2y_A GTPase family protein; 90.2 0.091 3.1E-06 54.3 1.7 56 99-156 55-110 (368)
296 3tif_A Uncharacterized ABC tra 90.1 0.13 4.4E-06 49.6 2.6 20 10-32 33-52 (235)
297 2bbw_A Adenylate kinase 4, AK4 90.0 0.17 5.9E-06 48.7 3.5 26 9-37 28-53 (246)
298 3b85_A Phosphate starvation-in 89.9 0.14 4.8E-06 48.4 2.6 22 10-34 24-45 (208)
299 3t61_A Gluconokinase; PSI-biol 89.9 0.17 6E-06 46.9 3.3 24 10-36 20-43 (202)
300 2bdt_A BH3686; alpha-beta prot 89.9 0.17 5.9E-06 46.4 3.2 21 10-33 4-24 (189)
301 1uf9_A TT1252 protein; P-loop, 89.9 0.19 6.4E-06 46.5 3.5 29 3-34 3-31 (203)
302 2onk_A Molybdate/tungstate ABC 89.8 0.14 4.8E-06 49.5 2.6 20 10-32 26-45 (240)
303 2qor_A Guanylate kinase; phosp 89.7 0.17 5.8E-06 47.2 3.1 25 8-35 12-36 (204)
304 1xjc_A MOBB protein homolog; s 89.7 0.18 6E-06 46.0 3.0 22 10-34 6-27 (169)
305 2pcj_A ABC transporter, lipopr 89.6 0.14 4.8E-06 48.9 2.4 19 10-31 32-50 (224)
306 3zvl_A Bifunctional polynucleo 89.6 0.64 2.2E-05 48.7 7.8 22 10-34 260-281 (416)
307 4fcw_A Chaperone protein CLPB; 89.5 0.72 2.5E-05 45.6 7.8 35 106-140 110-144 (311)
308 2eyu_A Twitching motility prot 89.5 0.17 5.8E-06 49.5 3.0 21 10-33 27-47 (261)
309 2jeo_A Uridine-cytidine kinase 89.5 0.18 6.3E-06 48.5 3.2 26 9-37 26-51 (245)
310 3ec2_A DNA replication protein 89.3 0.21 7.2E-06 45.4 3.3 23 9-34 39-61 (180)
311 3vaa_A Shikimate kinase, SK; s 89.3 0.22 7.4E-06 46.3 3.4 24 10-36 27-50 (199)
312 3aez_A Pantothenate kinase; tr 89.3 0.18 6E-06 50.8 2.9 24 7-33 89-112 (312)
313 1ly1_A Polynucleotide kinase; 89.2 0.17 5.8E-06 45.7 2.6 21 10-33 4-24 (181)
314 1ihu_A Arsenical pump-driving 89.2 0.77 2.6E-05 50.3 8.3 40 116-155 200-240 (589)
315 2f1r_A Molybdopterin-guanine d 89.1 0.1 3.5E-06 47.7 0.9 21 10-33 4-24 (171)
316 2i3b_A HCR-ntpase, human cance 89.0 0.2 6.7E-06 46.6 2.9 22 10-34 3-24 (189)
317 2v9p_A Replication protein E1; 89.0 0.2 6.8E-06 50.3 3.1 22 10-34 128-149 (305)
318 2d2e_A SUFC protein; ABC-ATPas 89.0 0.17 5.9E-06 49.1 2.6 21 10-33 31-51 (250)
319 2jaq_A Deoxyguanosine kinase; 88.9 0.23 7.9E-06 45.8 3.3 24 10-36 2-25 (205)
320 1d1n_A Initiation factor 2; be 88.9 1.1 3.8E-05 36.6 6.9 63 374-447 13-75 (99)
321 1cke_A CK, MSSA, protein (cyti 88.9 0.23 7.8E-06 46.9 3.3 25 9-36 6-30 (227)
322 2cbz_A Multidrug resistance-as 88.9 0.18 6.1E-06 48.6 2.6 20 10-32 33-52 (237)
323 1qhx_A CPT, protein (chloramph 88.8 0.23 7.8E-06 44.9 3.2 24 10-36 5-28 (178)
324 2pze_A Cystic fibrosis transme 88.8 0.18 6.2E-06 48.3 2.6 20 10-32 36-55 (229)
325 1b0u_A Histidine permease; ABC 88.8 0.18 6.2E-06 49.4 2.6 20 10-32 34-53 (262)
326 4g1u_C Hemin import ATP-bindin 88.7 0.19 6.4E-06 49.4 2.6 20 10-32 39-58 (266)
327 1g6h_A High-affinity branched- 88.7 0.19 6.3E-06 49.1 2.6 20 10-32 35-54 (257)
328 3fb4_A Adenylate kinase; psych 88.7 0.25 8.4E-06 46.3 3.4 24 10-36 2-25 (216)
329 1jjv_A Dephospho-COA kinase; P 88.7 0.22 7.6E-06 46.3 3.0 22 9-33 3-24 (206)
330 1mv5_A LMRA, multidrug resista 88.7 0.2 6.8E-06 48.4 2.8 20 10-32 30-49 (243)
331 3gfo_A Cobalt import ATP-bindi 88.7 0.19 6.3E-06 49.7 2.6 20 10-32 36-55 (275)
332 2ehv_A Hypothetical protein PH 88.7 0.2 6.8E-06 47.9 2.7 20 10-32 32-51 (251)
333 3n70_A Transport activator; si 88.6 0.72 2.5E-05 40.3 6.2 24 7-33 23-46 (145)
334 1sgw_A Putative ABC transporte 88.6 0.19 6.6E-06 47.6 2.6 20 10-32 37-56 (214)
335 3dl0_A Adenylate kinase; phosp 88.6 0.26 8.9E-06 46.2 3.5 24 10-36 2-25 (216)
336 2ff7_A Alpha-hemolysin translo 88.5 0.2 6.7E-06 48.7 2.6 20 10-32 37-56 (247)
337 4a74_A DNA repair and recombin 88.5 0.21 7.1E-06 47.1 2.7 22 10-34 27-48 (231)
338 1ji0_A ABC transporter; ATP bi 88.5 0.2 6.8E-06 48.4 2.6 20 10-32 34-53 (240)
339 3trf_A Shikimate kinase, SK; a 88.4 0.27 9.3E-06 44.7 3.4 24 10-36 7-30 (185)
340 2rcn_A Probable GTPase ENGC; Y 88.4 0.22 7.5E-06 51.1 2.9 22 10-34 217-238 (358)
341 2zu0_C Probable ATP-dependent 88.3 0.2 7E-06 49.1 2.6 21 10-33 48-68 (267)
342 2if2_A Dephospho-COA kinase; a 88.3 0.21 7.3E-06 46.3 2.6 21 10-33 3-23 (204)
343 3cm0_A Adenylate kinase; ATP-b 88.2 0.32 1.1E-05 44.2 3.8 25 9-36 5-29 (186)
344 2ghi_A Transport protein; mult 88.2 0.21 7.1E-06 48.9 2.6 20 10-32 48-67 (260)
345 3uie_A Adenylyl-sulfate kinase 88.2 0.25 8.6E-06 45.9 3.1 23 9-34 26-48 (200)
346 2olj_A Amino acid ABC transpor 88.1 0.21 7.3E-06 48.9 2.6 20 10-32 52-71 (263)
347 1via_A Shikimate kinase; struc 88.0 0.27 9.4E-06 44.4 3.1 24 10-36 6-29 (175)
348 1nks_A Adenylate kinase; therm 87.9 0.24 8.1E-06 45.2 2.6 22 10-34 3-24 (194)
349 2qi9_C Vitamin B12 import ATP- 87.9 0.22 7.7E-06 48.3 2.6 20 10-32 28-47 (249)
350 1vpl_A ABC transporter, ATP-bi 87.9 0.22 7.7E-06 48.6 2.6 20 10-32 43-62 (256)
351 3lnc_A Guanylate kinase, GMP k 87.8 0.17 5.8E-06 48.2 1.6 22 10-34 29-51 (231)
352 2ixe_A Antigen peptide transpo 87.7 0.24 8.1E-06 48.8 2.6 20 10-32 47-66 (271)
353 1odf_A YGR205W, hypothetical 3 87.6 0.31 1.1E-05 48.4 3.5 24 7-33 30-53 (290)
354 3kta_A Chromosome segregation 87.6 0.29 9.9E-06 44.5 3.0 20 17-36 32-51 (182)
355 3hr8_A Protein RECA; alpha and 87.6 0.94 3.2E-05 46.4 7.1 22 10-34 63-84 (356)
356 2yz2_A Putative ABC transporte 87.6 0.24 8.3E-06 48.6 2.6 20 10-32 35-54 (266)
357 2bwj_A Adenylate kinase 5; pho 87.5 0.25 8.4E-06 45.5 2.5 25 9-36 13-37 (199)
358 1kht_A Adenylate kinase; phosp 87.4 0.28 9.6E-06 44.7 2.8 23 9-34 4-26 (192)
359 3tqc_A Pantothenate kinase; bi 87.4 0.28 9.6E-06 49.5 3.0 24 8-34 92-115 (321)
360 2ihy_A ABC transporter, ATP-bi 87.4 0.25 8.5E-06 48.9 2.6 19 10-31 49-67 (279)
361 2kjq_A DNAA-related protein; s 87.4 0.3 1E-05 43.3 2.8 22 10-34 38-59 (149)
362 2rhm_A Putative kinase; P-loop 87.4 0.29 9.9E-06 44.7 2.9 25 9-36 6-30 (193)
363 2rcn_A Probable GTPase ENGC; Y 87.4 1.1 3.7E-05 45.9 7.4 44 111-156 128-174 (358)
364 2nq2_C Hypothetical ABC transp 87.4 0.25 8.5E-06 48.1 2.5 20 10-32 33-52 (253)
365 1tev_A UMP-CMP kinase; ploop, 87.2 0.36 1.2E-05 44.0 3.5 25 9-36 4-28 (196)
366 3pg5_A Uncharacterized protein 87.2 0.63 2.2E-05 47.7 5.6 35 89-125 153-187 (361)
367 3ez9_A Para; DNA binding, wing 87.1 1 3.5E-05 46.8 7.2 66 88-155 246-323 (403)
368 2qt1_A Nicotinamide riboside k 87.0 0.3 1E-05 45.5 2.8 24 8-34 21-44 (207)
369 2c95_A Adenylate kinase 1; tra 87.0 0.21 7.1E-06 45.9 1.6 26 8-36 9-34 (196)
370 4e22_A Cytidylate kinase; P-lo 86.9 0.37 1.3E-05 46.7 3.5 26 9-37 28-53 (252)
371 3jvv_A Twitching mobility prot 86.9 0.34 1.2E-05 49.7 3.3 22 10-34 125-146 (356)
372 2plr_A DTMP kinase, probable t 86.9 0.39 1.3E-05 44.5 3.5 25 9-36 5-29 (213)
373 1rz3_A Hypothetical protein rb 86.8 0.31 1E-05 45.4 2.7 22 9-33 23-44 (201)
374 1f2t_A RAD50 ABC-ATPase; DNA d 86.7 0.32 1.1E-05 43.1 2.7 19 17-35 29-47 (149)
375 2v54_A DTMP kinase, thymidylat 86.7 0.35 1.2E-05 44.6 3.1 24 8-34 4-27 (204)
376 1sq5_A Pantothenate kinase; P- 86.6 0.3 1E-05 48.9 2.7 23 9-34 81-103 (308)
377 2grj_A Dephospho-COA kinase; T 86.6 0.45 1.6E-05 44.2 3.7 27 7-36 11-37 (192)
378 2gza_A Type IV secretion syste 86.4 0.27 9.4E-06 50.5 2.3 22 9-33 176-197 (361)
379 2ze6_A Isopentenyl transferase 86.3 0.37 1.3E-05 46.8 3.1 24 10-36 3-26 (253)
380 2pt5_A Shikimate kinase, SK; a 86.3 0.42 1.5E-05 42.6 3.3 24 10-36 2-25 (168)
381 3iij_A Coilin-interacting nucl 86.2 0.4 1.4E-05 43.5 3.1 25 9-36 12-36 (180)
382 2pjz_A Hypothetical protein ST 86.2 0.34 1.2E-05 47.5 2.8 20 10-32 32-51 (263)
383 1u0l_A Probable GTPase ENGC; p 86.2 0.31 1.1E-05 48.6 2.6 21 10-33 171-191 (301)
384 1lw7_A Transcriptional regulat 86.1 0.3 1E-05 50.2 2.4 25 8-35 170-194 (365)
385 1hqc_A RUVB; extended AAA-ATPa 86.1 2.5 8.4E-05 41.9 9.2 23 9-34 39-61 (324)
386 3tui_C Methionine import ATP-b 85.9 0.33 1.1E-05 49.9 2.6 20 10-32 56-75 (366)
387 1vht_A Dephospho-COA kinase; s 85.9 0.42 1.4E-05 44.9 3.2 22 9-33 5-26 (218)
388 1y63_A LMAJ004144AAA protein; 85.9 0.48 1.6E-05 43.3 3.5 24 8-34 10-33 (184)
389 3fvq_A Fe(3+) IONS import ATP- 85.9 0.31 1.1E-05 50.0 2.4 21 10-33 32-52 (359)
390 3of5_A Dethiobiotin synthetase 85.9 1.5 5.1E-05 41.8 7.1 68 88-155 109-182 (228)
391 1e4v_A Adenylate kinase; trans 85.8 0.43 1.5E-05 44.7 3.2 24 10-36 2-25 (214)
392 2ewv_A Twitching motility prot 85.7 0.39 1.3E-05 49.6 3.1 22 10-34 138-159 (372)
393 2pt7_A CAG-ALFA; ATPase, prote 85.7 0.26 9E-06 50.0 1.7 21 10-33 173-193 (330)
394 2vhj_A Ntpase P4, P4; non- hyd 85.7 0.62 2.1E-05 46.9 4.4 21 11-34 126-146 (331)
395 1ukz_A Uridylate kinase; trans 85.7 0.52 1.8E-05 43.6 3.7 25 9-36 16-40 (203)
396 3tlx_A Adenylate kinase 2; str 85.6 0.5 1.7E-05 45.5 3.6 27 7-36 28-54 (243)
397 2x8a_A Nuclear valosin-contain 85.6 0.44 1.5E-05 46.9 3.3 23 11-36 47-69 (274)
398 1z47_A CYSA, putative ABC-tran 85.6 0.35 1.2E-05 49.6 2.6 20 10-32 43-62 (355)
399 2chg_A Replication factor C sm 85.6 1.5 5.1E-05 40.3 6.9 22 10-34 40-61 (226)
400 1gtv_A TMK, thymidylate kinase 85.6 0.19 6.5E-06 46.9 0.6 22 10-34 2-23 (214)
401 3ug7_A Arsenical pump-driving 85.6 2.4 8.3E-05 43.0 9.0 67 114-181 237-304 (349)
402 2pbr_A DTMP kinase, thymidylat 85.6 0.41 1.4E-05 43.7 2.8 21 10-33 2-22 (195)
403 2bbs_A Cystic fibrosis transme 85.5 0.34 1.2E-05 48.2 2.4 20 10-32 66-85 (290)
404 2yyz_A Sugar ABC transporter, 85.4 0.36 1.2E-05 49.6 2.6 20 10-32 31-50 (359)
405 2iyv_A Shikimate kinase, SK; t 85.4 0.46 1.6E-05 43.1 3.2 24 10-36 4-27 (184)
406 1sxj_A Activator 1 95 kDa subu 85.4 3.2 0.00011 44.6 10.3 24 10-36 79-102 (516)
407 2z0h_A DTMP kinase, thymidylat 85.3 0.39 1.3E-05 44.0 2.6 20 11-33 3-22 (197)
408 1aky_A Adenylate kinase; ATP:A 85.3 0.5 1.7E-05 44.4 3.4 25 9-36 5-29 (220)
409 1zd8_A GTP:AMP phosphotransfer 85.2 0.49 1.7E-05 44.8 3.3 25 9-36 8-32 (227)
410 3nh6_A ATP-binding cassette SU 85.2 0.26 9.1E-06 49.4 1.4 20 10-32 82-101 (306)
411 2cdn_A Adenylate kinase; phosp 85.1 0.51 1.7E-05 43.6 3.3 26 8-36 20-45 (201)
412 2w0m_A SSO2452; RECA, SSPF, un 85.1 0.46 1.6E-05 44.6 3.1 22 10-34 25-46 (235)
413 2it1_A 362AA long hypothetical 85.1 0.38 1.3E-05 49.5 2.6 20 10-32 31-50 (362)
414 1e6c_A Shikimate kinase; phosp 85.1 0.5 1.7E-05 42.3 3.1 24 10-36 4-27 (173)
415 3pfi_A Holliday junction ATP-d 85.0 2.1 7.3E-05 42.8 8.2 23 9-34 56-78 (338)
416 1p9r_A General secretion pathw 85.0 0.44 1.5E-05 50.0 3.1 22 10-34 169-190 (418)
417 1g29_1 MALK, maltose transport 84.9 0.39 1.3E-05 49.6 2.6 20 10-32 31-50 (372)
418 2yvu_A Probable adenylyl-sulfa 84.9 0.48 1.7E-05 43.2 3.0 24 8-34 13-36 (186)
419 1nij_A Hypothetical protein YJ 84.9 0.37 1.3E-05 48.5 2.4 22 10-34 6-27 (318)
420 1uj2_A Uridine-cytidine kinase 84.9 0.57 2E-05 45.2 3.7 27 7-36 21-47 (252)
421 1zuh_A Shikimate kinase; alpha 84.8 0.56 1.9E-05 41.9 3.4 24 10-36 9-32 (168)
422 1v43_A Sugar-binding transport 84.8 0.39 1.3E-05 49.5 2.6 20 10-32 39-58 (372)
423 3rlf_A Maltose/maltodextrin im 84.7 0.4 1.4E-05 49.5 2.6 20 10-32 31-50 (381)
424 2vli_A Antibiotic resistance p 84.6 0.42 1.4E-05 43.2 2.4 24 10-36 7-30 (183)
425 4a1f_A DNAB helicase, replicat 84.6 0.79 2.7E-05 46.6 4.7 21 11-34 49-69 (338)
426 2b8t_A Thymidine kinase; deoxy 84.6 0.71 2.4E-05 44.0 4.1 41 115-155 89-129 (223)
427 1a7j_A Phosphoribulokinase; tr 84.6 0.3 1E-05 48.5 1.6 25 7-34 4-28 (290)
428 2afh_E Nitrogenase iron protei 84.6 0.64 2.2E-05 45.8 3.9 67 88-154 117-189 (289)
429 1gvn_B Zeta; postsegregational 84.5 0.47 1.6E-05 47.0 3.0 24 9-35 34-57 (287)
430 3ez2_A Plasmid partition prote 84.5 1.9 6.6E-05 44.5 7.8 36 88-125 243-278 (398)
431 1qf9_A UMP/CMP kinase, protein 84.5 0.53 1.8E-05 42.8 3.1 24 10-36 8-31 (194)
432 3r20_A Cytidylate kinase; stru 84.4 0.57 1.9E-05 45.0 3.4 26 8-36 9-34 (233)
433 3sr0_A Adenylate kinase; phosp 84.4 0.59 2E-05 43.9 3.4 25 10-37 2-26 (206)
434 1ak2_A Adenylate kinase isoenz 84.4 0.58 2E-05 44.5 3.4 27 7-36 15-41 (233)
435 1nn5_A Similar to deoxythymidy 84.3 0.47 1.6E-05 44.1 2.7 24 8-34 9-32 (215)
436 1cp2_A CP2, nitrogenase iron p 84.3 0.78 2.7E-05 44.4 4.4 67 88-154 114-186 (269)
437 2v1u_A Cell division control p 84.3 2 7E-05 43.5 7.8 23 9-34 45-67 (387)
438 2oap_1 GSPE-2, type II secreti 84.1 0.37 1.3E-05 52.0 2.1 21 10-33 262-282 (511)
439 2vp4_A Deoxynucleoside kinase; 84.1 0.34 1.2E-05 46.2 1.6 24 8-34 20-43 (230)
440 2pez_A Bifunctional 3'-phospho 84.1 0.51 1.8E-05 42.7 2.8 22 9-33 6-27 (179)
441 1ixz_A ATP-dependent metallopr 84.0 0.57 1.9E-05 45.1 3.2 21 11-34 52-72 (254)
442 1zak_A Adenylate kinase; ATP:A 83.9 0.52 1.8E-05 44.4 2.8 25 9-36 6-30 (222)
443 1jbk_A CLPB protein; beta barr 83.6 0.66 2.2E-05 41.6 3.3 23 9-34 44-66 (195)
444 2cvh_A DNA repair and recombin 83.5 0.57 2E-05 43.6 2.9 21 10-33 22-42 (220)
445 2xb4_A Adenylate kinase; ATP-b 83.4 0.65 2.2E-05 43.9 3.3 24 10-36 2-25 (223)
446 3nwj_A ATSK2; P loop, shikimat 83.4 0.6 2E-05 45.3 3.0 25 9-36 49-73 (250)
447 3d31_A Sulfate/molybdate ABC t 83.2 0.34 1.2E-05 49.5 1.2 20 10-32 28-47 (348)
448 3a8t_A Adenylate isopentenyltr 83.1 0.58 2E-05 47.5 2.9 24 10-36 42-65 (339)
449 2p5t_B PEZT; postsegregational 83.0 0.51 1.8E-05 45.6 2.4 25 9-36 33-57 (253)
450 3gd7_A Fusion complex of cysti 82.9 0.5 1.7E-05 49.1 2.4 21 10-33 49-69 (390)
451 3a4m_A L-seryl-tRNA(SEC) kinas 82.9 0.54 1.8E-05 45.7 2.6 22 10-34 6-27 (260)
452 3qf7_A RAD50; ABC-ATPase, ATPa 82.9 0.58 2E-05 48.1 2.9 18 17-34 29-46 (365)
453 3d3q_A TRNA delta(2)-isopenten 82.9 0.75 2.6E-05 46.7 3.7 25 9-36 8-32 (340)
454 1xp8_A RECA protein, recombina 82.7 2.3 7.9E-05 43.6 7.4 22 10-34 76-97 (366)
455 3be4_A Adenylate kinase; malar 82.6 0.73 2.5E-05 43.3 3.3 25 9-36 6-30 (217)
456 1cr0_A DNA primase/helicase; R 82.4 0.63 2.2E-05 46.0 2.9 22 10-34 37-58 (296)
457 2npi_A Protein CLP1; CLP1-PCF1 82.1 0.61 2.1E-05 49.6 2.7 22 10-34 140-161 (460)
458 4f4c_A Multidrug resistance pr 82.1 0.35 1.2E-05 58.4 0.9 20 10-32 1107-1126(1321)
459 1iy2_A ATP-dependent metallopr 82.1 0.73 2.5E-05 45.1 3.2 21 11-34 76-96 (278)
460 3zq6_A Putative arsenical pump 81.9 3.8 0.00013 41.0 8.6 66 115-181 223-289 (324)
461 1n0w_A DNA repair protein RAD5 81.8 0.71 2.4E-05 43.7 2.9 22 10-34 26-47 (243)
462 1oxx_K GLCV, glucose, ABC tran 81.6 0.34 1.2E-05 49.6 0.6 20 10-32 33-52 (353)
463 3umf_A Adenylate kinase; rossm 81.5 0.85 2.9E-05 43.2 3.3 21 17-37 35-55 (217)
464 3ake_A Cytidylate kinase; CMP 81.5 0.85 2.9E-05 42.0 3.3 24 10-36 4-27 (208)
465 1m7g_A Adenylylsulfate kinase; 81.4 0.69 2.4E-05 43.2 2.6 22 9-33 26-47 (211)
466 1in4_A RUVB, holliday junction 81.3 0.74 2.5E-05 46.5 3.0 24 10-36 53-76 (334)
467 2w58_A DNAI, primosome compone 81.3 0.88 3E-05 41.9 3.3 23 9-34 55-77 (202)
468 2crv_A IF-2MT, translation ini 81.2 3.6 0.00012 34.8 6.6 66 369-447 15-82 (120)
469 1qvr_A CLPB protein; coiled co 81.1 8.9 0.00031 43.9 12.3 23 9-34 589-611 (854)
470 2f6r_A COA synthase, bifunctio 80.6 0.81 2.8E-05 45.1 2.9 23 7-32 74-96 (281)
471 3gmt_A Adenylate kinase; ssgci 80.5 0.99 3.4E-05 43.1 3.4 28 6-36 6-33 (230)
472 3euj_A Chromosome partition pr 80.4 0.8 2.7E-05 48.9 2.9 22 10-34 31-52 (483)
473 3qks_A DNA double-strand break 80.1 0.83 2.8E-05 42.6 2.7 20 17-36 29-48 (203)
474 3bos_A Putative DNA replicatio 80.0 1 3.4E-05 42.3 3.3 24 8-34 52-75 (242)
475 1lv7_A FTSH; alpha/beta domain 80.0 1 3.4E-05 43.4 3.3 23 10-35 47-69 (257)
476 1xwi_A SKD1 protein; VPS4B, AA 79.9 4.2 0.00014 40.7 8.0 22 10-34 47-68 (322)
477 4eaq_A DTMP kinase, thymidylat 79.7 0.99 3.4E-05 43.0 3.1 25 8-35 26-50 (229)
478 1nlf_A Regulatory protein REPA 79.6 0.87 3E-05 44.6 2.7 21 10-33 32-52 (279)
479 2obl_A ESCN; ATPase, hydrolase 79.6 0.94 3.2E-05 46.2 3.1 24 10-36 73-96 (347)
480 1q57_A DNA primase/helicase; d 79.6 1.5 5.1E-05 47.0 4.8 19 17-35 248-266 (503)
481 1r6b_X CLPA protein; AAA+, N-t 79.3 14 0.00047 41.6 12.9 35 107-141 549-583 (758)
482 1svm_A Large T antigen; AAA+ f 79.3 0.98 3.4E-05 46.6 3.1 22 10-34 171-192 (377)
483 2p65_A Hypothetical protein PF 79.2 0.86 2.9E-05 40.8 2.4 23 9-34 44-66 (187)
484 3cmu_A Protein RECA, recombina 79.2 3.9 0.00014 50.8 8.8 24 9-35 1428-1451(2050)
485 1q3t_A Cytidylate kinase; nucl 79.2 1.2 4E-05 42.4 3.4 26 8-36 16-41 (236)
486 3b5x_A Lipid A export ATP-bind 78.9 0.87 3E-05 49.9 2.7 21 10-33 371-391 (582)
487 1ltq_A Polynucleotide kinase; 78.8 0.89 3.1E-05 44.9 2.6 21 10-33 4-24 (301)
488 3tqf_A HPR(Ser) kinase; transf 78.4 1 3.6E-05 41.0 2.6 22 10-34 18-39 (181)
489 1qhl_A Protein (cell division 78.3 0.32 1.1E-05 46.6 -0.9 19 17-35 33-51 (227)
490 3qkt_A DNA double-strand break 78.2 0.97 3.3E-05 45.8 2.7 18 17-34 29-46 (339)
491 1zcb_A G alpha I/13; GTP-bindi 77.8 1.2 3.9E-05 45.8 3.1 23 6-31 31-53 (362)
492 2qmh_A HPR kinase/phosphorylas 77.7 1 3.6E-05 42.0 2.5 23 9-34 35-57 (205)
493 1ojl_A Transcriptional regulat 77.4 3.5 0.00012 40.9 6.5 25 7-34 24-48 (304)
494 3b60_A Lipid A export ATP-bind 77.2 1 3.4E-05 49.4 2.6 20 10-32 371-390 (582)
495 2dr3_A UPF0273 protein PH0284; 77.2 1.2 4.1E-05 42.2 2.8 22 10-34 25-46 (247)
496 1yqt_A RNAse L inhibitor; ATP- 77.1 1.1 3.7E-05 48.6 2.8 21 388-408 302-322 (538)
497 1ihu_A Arsenical pump-driving 77.1 2.7 9.1E-05 46.0 6.0 68 88-155 439-532 (589)
498 3pvs_A Replication-associated 77.1 5.4 0.00018 42.0 8.1 23 10-35 52-74 (447)
499 2dpy_A FLII, flagellum-specifi 77.0 1.2 4.2E-05 46.9 3.1 23 10-35 159-181 (438)
500 3qf4_B Uncharacterized ABC tra 76.9 0.87 3E-05 50.1 2.0 20 10-32 383-402 (598)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=5.8e-99 Score=869.13 Aligned_cols=572 Identities=61% Similarity=0.987 Sum_probs=496.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|+| +||+|||||||+++|++.+|.+.+...++++++|++++|++||+|+.++..++.|......+.......
T Consensus 17 ~~~rnI~I---iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~ 93 (842)
T 1n0u_A 17 TNVRNMSV---IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT 93 (842)
T ss_dssp GGEEEEEE---ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred ccccEEEE---ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccc
Confidence 35679999 999999999999999999999988777777899999999999999999999998862111111111123
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 165 (584)
+++++.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|+++...++|+++|+||||+...++++++++
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcC
Q 007929 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~ 245 (584)
++++++++++++|..+..|....++++.+.|..+++||+|+.+||+|++++|+..|+.++++|.+.+.+++||++||+.+
T Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~ 253 (842)
T 1n0u_A 174 LYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK 253 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCC
Confidence 99999999999999998776554455567788889999999999999999999999999999999999999999999887
Q ss_pred CCeeeecC--CCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHH
Q 007929 246 TRKWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (584)
Q Consensus 246 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~ 323 (584)
+++|...+ ......++.|++++++|+|+|+|++++.|+++||+||+++|++++.+|++..+++|+++++++|+|+++.
T Consensus 254 ~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~ 333 (842)
T 1n0u_A 254 TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADA 333 (842)
T ss_dssp TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHH
T ss_pred CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHH
Confidence 77776542 1111357899999999999999999999999999999999999999998878899999999999999999
Q ss_pred HHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEE
Q 007929 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (584)
Q Consensus 324 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v 403 (584)
|||+|++++|||.+++.++...++.|..+++....++.|++++||+|+|||+..+++.|++++|+|||||+|++|+.|++
T Consensus 334 LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v 413 (842)
T 1n0u_A 334 LLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRI 413 (842)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEE
T ss_pred HHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEe
Confidence 99999999999999888887777777544444456678999999999999999999999779999999999999999999
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccceEeccCCCCCcccccccccCCCceEEE
Q 007929 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRV 483 (584)
Q Consensus 404 ~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~ 483 (584)
++++++.++.+++..+||++|++++|+++++|++|.|||||+|.||+++.+++||||+.. .+..++++.+|.+|++++
T Consensus 414 ~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~--~~~~l~~~~~~~~Pv~~~ 491 (842)
T 1n0u_A 414 QGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSE--TAHNMKVMKFSVSPVVQV 491 (842)
T ss_dssp ECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCT--TCCCBCCCCCCCSCCEEE
T ss_pred ccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCC--CccccccCCCCCCceEEE
Confidence 988877665443344799999999999999999999999999999999877888999976 667888888875699999
Q ss_pred EEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeEeeeecc
Q 007929 484 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 563 (584)
Q Consensus 484 aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yrETi~~~ 563 (584)
+|+|++++|++||.+||++|++|||+|+++++||||++|+||||||||++++||+++|+ ||+|++++|+|+|||||+++
T Consensus 492 avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f~-~vev~~~~P~V~yrETi~~~ 570 (842)
T 1n0u_A 492 AVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHA-GVPLKISPPVVAYRETVESE 570 (842)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTTS-CSCEEEECCCCCCEEEESSC
T ss_pred EEEECCHHHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHhc-CCceEecCcEEEEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred ccceeeecCCCCCceeEEEe
Q 007929 564 SCRTVMSKSPNKHNRRSCRG 583 (584)
Q Consensus 564 ~~~~~~~~~~n~~~~~~~~~ 583 (584)
++..++.++||+||++++++
T Consensus 571 ~~~~~~~~~~~~~~~v~~~~ 590 (842)
T 1n0u_A 571 SSQTALSKSPNKHNRIYLKA 590 (842)
T ss_dssp CSSCEEEECTTSSCEEEEEE
T ss_pred cccceeeccCCcceEEEEEE
Confidence 99999999999999999865
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.4e-87 Score=763.94 Aligned_cols=476 Identities=29% Similarity=0.416 Sum_probs=388.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~ 83 (584)
.+..|||| +||+|||||||+++||+.+|.+.+.+. ++.+++|++++|++|||||+++.+++.|+. .
T Consensus 11 ~~IRNi~I---iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~---------~ 78 (709)
T 4fn5_A 11 NRYRNIGI---CAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKG---------S 78 (709)
T ss_dssp GGEEEEEE---ECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECC---------T
T ss_pred HHCeEEEE---EcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEecc---------C
Confidence 56789999 999999999999999999999887543 347899999999999999999999999982 2
Q ss_pred cCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCH
Q 007929 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (584)
Q Consensus 84 ~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~ 163 (584)
..+.++|+|||||||||.||..|+.++|+++|+||+||||++|+++||+.+|++|.+.++|+++|||||||..
T Consensus 79 ~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~------- 151 (709)
T 4fn5_A 79 RGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQG------- 151 (709)
T ss_dssp TSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTT-------
T ss_pred cCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccC-------
Confidence 2234579999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccC
Q 007929 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (584)
Q Consensus 164 ~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~ 243 (584)
++++.++++++..|+ . ...| .|+|++++....+. +|+..+.+++|++..
T Consensus 152 ----a~~~~~~~ei~~~l~--------~-~~~~--~~~pi~~~~~~~g~--------------vd~~~~~~~~~~~~~-- 200 (709)
T 4fn5_A 152 ----ANFLRVVEQIKKRLG--------H-TPVP--VQLAIGAEENFVGQ--------------VDLIKMKAIYWNDDD-- 200 (709)
T ss_dssp ----CCHHHHHHHHHHHHC--------S-CEEE--SEEEESSSTTCCEE--------------EETTTTEEEEEEC----
T ss_pred ----ccHHHHHHHhhhhcc--------c-ceee--eecccCchhccceE--------------EEEeeeeEEEeeccc--
Confidence 567888888888872 2 2334 47888876644432 567777777776532
Q ss_pred cCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-Hhhccc--
Q 007929 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-- 320 (584)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~-~~~~P~-- 320 (584)
.+..+... .++..+.+.....+..++|.+++.|++++++|+++ .+++.+++. ..+..... .+++|+
T Consensus 201 -~g~~~~~~-----~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~--~~~~~~~~~---~~l~~~~~~~~~~pv~~ 269 (709)
T 4fn5_A 201 -KGMTYREE-----EIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEE--GELSEAEIK---EGLRLRTLACEIVPAVC 269 (709)
T ss_dssp -CCCEEEEC-----CCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHH--SCCCHHHHH---HHHHHHHHTTSCEEEEE
T ss_pred -CCceeccc-----cccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCccHHHHH---HHHHHhhhhceeeeeee
Confidence 22234333 37888899999999999999999999999999999 889998887 66666655 378885
Q ss_pred --------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEe
Q 007929 321 --------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 392 (584)
Q Consensus 321 --------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~s 392 (584)
++.|||+|++++|+|.+.+..+.... +++.....+.||+++||+++|||+..|++.|+ ++|+||||
T Consensus 270 gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~-----~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~-la~~RV~s 343 (709)
T 4fn5_A 270 GSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSP-----DDETVEDERHADDNEPFSSLAFKIATDPFVGT-LTFARVYS 343 (709)
T ss_dssp CBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCC-----C-CCSCCEECSCTTSCCEEEEEECCCBTTTBC-CCEEEEEE
T ss_pred eecccCCchHHHHHHHHhhCCCCcccccccccCC-----ccccccccccCCccCcceEEEEEeecccCCCc-eEEEeccC
Confidence 68999999999999998765543322 22334466789999999999999999999888 99999999
Q ss_pred eeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCccccc
Q 007929 393 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIR 471 (584)
Q Consensus 393 GtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~ 471 (584)
|+|++||.|+ |.+++++ +++++++.++|+++++|++|.|||||+|.|++++ .+| ||++.. .+..++
T Consensus 344 Gtl~~G~~v~----~~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~--~~gdTl~~~~--~~~~~~ 410 (709)
T 4fn5_A 344 GVLSSGDSVL----NSVKGKK-----ERVGRMVQMHANQREEIKEVRAGDIAALIGMKDV--TTGDTLCSIE--KPIILE 410 (709)
T ss_dssp SCEETTCBCB----CTTTCCC-----CBCCCEECCCSSCCCEESEECTTCEEEECSCSSC--CTTCEEECSS--SCCBCC
T ss_pred CCCCCCCEEE----EecCCcE-----EeecceeEeecceeeEeeeecCCCeeeecCCCcC--ccCCEecCCC--ccccCC
Confidence 9999999999 6666666 5899999999999999999999999999999986 677 999987 677788
Q ss_pred ccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEE-cCCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEc
Q 007929 472 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 550 (584)
Q Consensus 472 ~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~-~etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~ 550 (584)
++.+| +|+++++|+|++++|++||.+||++|+++||+|.++. +||||++|+|||||||||+++||+++| |++|+++
T Consensus 411 ~~~~~-~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~--gvev~vs 487 (709)
T 4fn5_A 411 RMDFP-EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF--GVEANIG 487 (709)
T ss_dssp ----C-CCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTT--CCCBCCB
T ss_pred CCCCC-CcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHh--CceEEEe
Confidence 88887 8999999999999999999999999999999999998 599999999999999999999999999 9999999
Q ss_pred CcEEeeEeeeeccc
Q 007929 551 DPVVSFRETVLEKS 564 (584)
Q Consensus 551 ~p~V~yrETi~~~~ 564 (584)
+|+|+|||||++.+
T Consensus 488 ~P~V~yrETi~~~~ 501 (709)
T 4fn5_A 488 KPQVAYRETITKDN 501 (709)
T ss_dssp CCCCCCEEECCCCS
T ss_pred eceEEEEEEEecCC
Confidence 99999999998754
No 3
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=6.1e-82 Score=695.24 Aligned_cols=453 Identities=21% Similarity=0.258 Sum_probs=333.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccC------CCeeeeCChhhHhhhccceecceEEEEeecchhhhh
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA------GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~------g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~ 79 (584)
.+..|||| +||+|||||||+++||+.+|.|.+.+. +..+++|++++|++|||||.++.+++.|+
T Consensus 29 ~r~RNiaI---iaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~------- 98 (548)
T 3vqt_A 29 ARRRTFAI---ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR------- 98 (548)
T ss_dssp HTEEEEEE---ECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET-------
T ss_pred cccceEEE---EeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC-------
Confidence 36789999 999999999999999999999987532 23589999999999999999999999999
Q ss_pred cccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccc
Q 007929 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 159 (584)
Q Consensus 80 ~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~ 159 (584)
+++|||||||||.||..|+.++|+++|+||+||||++|+++||+.+|++|.+.++|+++||||||+..
T Consensus 99 ---------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~--- 166 (548)
T 3vqt_A 99 ---------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREA--- 166 (548)
T ss_dssp ---------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCC---
T ss_pred ---------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchh---
Confidence 89999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcC
Q 007929 160 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 239 (584)
Q Consensus 160 ~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~ 239 (584)
+++.+++++++..|. . ...|. ++|++.+....++ +|+..+++++|..
T Consensus 167 --------ad~~~~~~~i~~~l~--------~-~~~p~--~~Pig~~~~f~g~--------------vdl~~~~~~~~~~ 213 (548)
T 3vqt_A 167 --------LHPLDVMADIEQHLQ--------I-ECAPM--TWPIGMGSSFKGT--------------YDLLHKQLHLFSA 213 (548)
T ss_dssp --------CCHHHHHHHHHHHHT--------S-EEEES--EEEESCGGGCCEE--------------EETTTTEEEECC-
T ss_pred --------cchhHhhhhhhhhcC--------C-ceEeE--EeeeecCCcccce--------------Eeeeeeeeeeccc
Confidence 677888888888882 2 34454 7888776543332 5666666666642
Q ss_pred cccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhcc
Q 007929 240 NFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLP 319 (584)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P 319 (584)
.. .+...... ...... .+...+..+...+...+.++.+.+. +.+...+ ..++ ..++|
T Consensus 214 ~~----~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~e-------~~~~---g~~~P 270 (548)
T 3vqt_A 214 TH----GGRIQSGI----VIHGAD----DPQLDEYLGDQAEQLRMDLALLEEA-GTPFDEE-------RYLK---GELTP 270 (548)
T ss_dssp ----------CCCE----ECCSTT----CTHHHHHHGGGHHHHHHHHHHHHHH-CCCCCHH-------HHHT---TSEEE
T ss_pred cc----CCcccccc----cccccc----hHHHHHHHHHHHHHhhhHHHHHhhc-cCchhHH-------HHHh---CCcce
Confidence 21 01000000 000000 0001111111111111111112121 1222221 1111 26777
Q ss_pred c----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeec---CCCCceeE
Q 007929 320 A----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPA---SDKGRFFA 386 (584)
Q Consensus 320 ~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~---~~~g~~l~ 386 (584)
+ ++.|||+|++++|||.+..... ....+.++||+|+|||+..+ ++.|+ ++
T Consensus 271 V~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~----------------~~~~~~~~p~~a~vfKi~~~~~~~~~Gr-la 333 (548)
T 3vqt_A 271 VFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT----------------RVVEPGEEAFTGVVFKIQANMDKAHRDR-MA 333 (548)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS----------------SEECTTCSSCEEEEEEEECC-------C-EE
T ss_pred eeecccccCcCHHHHHHHHHHhCCCCCCccccc----------------cccCCCCcCceEEEEEEEccCCcCCCCe-EE
Confidence 5 7999999999999997642110 01123468999999999877 78898 99
Q ss_pred EEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCC
Q 007929 387 FGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV 465 (584)
Q Consensus 387 ~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~ 465 (584)
|+|||||+|++|+.|+ |.+++++ +|+++++.++|+++++|++|.|||||+|.|++++ .+| |||+.+
T Consensus 334 ~~RV~sG~l~~g~~v~----~~~~~~~-----~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GDTl~~~~-- 400 (548)
T 3vqt_A 334 FLRICSGTFTRGMRLK----HHRTGKD-----VTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI--KIGDTFTESK-- 400 (548)
T ss_dssp EEEEEESCEETTCEEE----ETTTTEE-----EECTTCEECCCSSCCSSCEECTTCEEEEECSSCC--CTTCEEESSS--
T ss_pred EEEEecceecCCCEEE----eeccccc-----cccchhhhhccccccccCEEecCCEEEecCCccC--ccCCEecCCC--
Confidence 9999999999999999 6566665 6999999999999999999999999999999997 788 999987
Q ss_pred CcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEecChhhHHHHHHHHHHhhCCCc
Q 007929 466 DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGA 545 (584)
Q Consensus 466 ~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g~GelHLe~~l~rL~~~f~~~v 545 (584)
.+..+++++++ +|+++++|+|++++|++||.++|++|+++||+..++.++|||++|+|||||||||+++||+++| ||
T Consensus 401 ~~~~~~~i~~~-~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey--~v 477 (548)
T 3vqt_A 401 EVLKFVGIPNF-APEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEY--GV 477 (548)
T ss_dssp SCCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSEEEEESSSCCCEEEESSTHHHHHHHHHHHHHH--CC
T ss_pred CccccCCCCCC-CCcceeeeeeCCchhHHHHHHHHHHhhhcCceeEEEECCCCcEEEEEECHHHHHHHHHHHHHHh--CC
Confidence 67788888887 8999999999999999999999999999999655544699999999999999999999999999 99
Q ss_pred eEE-----EcCcEEeeEeeeeccccceee
Q 007929 546 EII-----KSDPVVSFRETVLEKSCRTVM 569 (584)
Q Consensus 546 ~v~-----~~~p~V~yrETi~~~~~~~~~ 569 (584)
++. ++.|+|+|||||++.++....
T Consensus 478 ev~~e~v~~~~P~V~YrEti~~~~~~~~~ 506 (548)
T 3vqt_A 478 DAVYEGVSTHTARWVYCEDKKIFADFQDY 506 (548)
T ss_dssp CEEEEECSCCEEEEEECSCHHHHHHHHHH
T ss_pred CEEEeeccccCceEEecCCccchhhhhhh
Confidence 976 578999999999987765433
No 4
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=2.4e-79 Score=693.58 Aligned_cols=495 Identities=28% Similarity=0.371 Sum_probs=415.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~ 83 (584)
.+.++|+| +||+|||||||+++|++.+|.+.+.+. .+.+++|+.++|++||+|+.+...++.|...
T Consensus 8 ~~~~~I~I---iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~--------- 75 (704)
T 2rdo_7 8 ARYRNIGI---SAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGM--------- 75 (704)
T ss_pred ccccEEEE---ECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCc---------
Confidence 45679999 999999999999999999988776532 2368999999999999999999999988720
Q ss_pred cCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCH
Q 007929 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (584)
Q Consensus 84 ~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~ 163 (584)
..+++.+.+||||||||.||..++.++++.+|+||+|||+++|++.+|+.+|+++...++|+++|+||+|+..
T Consensus 76 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~------- 148 (704)
T 2rdo_7 76 AKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG------- 148 (704)
T ss_pred cccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc-------
Confidence 1123359999999999999999999999999999999999999999999999999889999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccC
Q 007929 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (584)
Q Consensus 164 ~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~ 243 (584)
.++++++++++..++ . ...| .++|++.+.. |. ..+|+..+++++|.+..
T Consensus 149 ----~~~~~~~~~l~~~l~--------~-~~~~--~~~Pi~~~~~--------f~------g~~dl~~~~~~~~~~~~-- 197 (704)
T 2rdo_7 149 ----ANFLKVVNQIKTRLG--------A-NPVP--LQLAIGAEEH--------FT------GVVDLVKMKAINWNDAD-- 197 (704)
T ss_pred ----ccHHHHHHHHHHHhC--------C-Ccee--EEcccccccc--------cc------ceeehhhhhhhcccCcc--
Confidence 467888888888873 1 1233 3677765432 21 13788899999885310
Q ss_pred cCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhccc--
Q 007929 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWLPA-- 320 (584)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~P~-- 320 (584)
.+.++... .++..+.+++.++|++|+|.+++.||++||+||++ ++++.+++. +++++.++. +|+|+
T Consensus 198 -~g~~~~~~-----~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~--~~l~~~~l~---~~l~~~~~~~~~~Pv~~ 266 (704)
T 2rdo_7 198 -QGVTFEYE-----DIPADMVELANEWHQNLIESAAEASEELMEKYLGG--EELTEAEIK---GALRQRVLNNEIILVTC 266 (704)
T ss_pred -CCcceEEe-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeEEEE
Confidence 12234433 36788999999999999999999999999999998 899999988 777777764 89997
Q ss_pred --------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEe
Q 007929 321 --------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 392 (584)
Q Consensus 321 --------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~s 392 (584)
++.|||+|++++|+|.+++.++.. .+. .+. ....+.|++++||+++|||++.|++.|+ ++|+||||
T Consensus 267 gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~--~~~--~~~-~~~~~~~~~~~p~~~~VfK~~~d~~~G~-~~~~RV~s 340 (704)
T 2rdo_7 267 GSAFKNKGVQAMLDAVIDYLPSPVDVPAINGI--LDD--GKD-TPAERHASDDEPFSALAFKIATDPFVGN-LTFFRVYS 340 (704)
T ss_pred eecccCccHHHHHHHHHHHCCChhhccccccc--CCc--ccc-cccccccCCCCceEEEEEEEEEcCCCce-EEEEEEEe
Confidence 699999999999999886554431 110 010 1245678999999999999999999999 99999999
Q ss_pred eeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCccccc
Q 007929 393 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIR 471 (584)
Q Consensus 393 GtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~ 471 (584)
|+|++||.|+ |.+++++ ++|++|+.++|+++++|++|.|||||+|.|++++ ++| |||+.. .+..++
T Consensus 341 G~l~~g~~v~----~~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~--~~GdTl~~~~--~~~~l~ 407 (704)
T 2rdo_7 341 GVVNSGDTVL----NSVKAAR-----ERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV--TTGDTLCDPD--APIILE 407 (704)
T ss_pred eeecCCCEEE----eCCCCcE-----EEeceEEEEeCCCceEcceeCCCCEEEEeCcccC--ccCCEEeCCC--cccccC
Confidence 9999999999 5555555 6999999999999999999999999999999986 788 999977 677888
Q ss_pred ccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEc
Q 007929 472 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 550 (584)
Q Consensus 472 ~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~ 550 (584)
++.++ .|+++++|+|++++|++||.+||++|.+|||+|+++++ ||||++|+||||||||++++||+++| |+++.++
T Consensus 408 ~~~~~-~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f--~v~v~~~ 484 (704)
T 2rdo_7 408 RMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF--NVEANVG 484 (704)
T ss_pred CCCCC-CceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceEEEe
Confidence 99887 89999999999999999999999999999999999995 89999999999999999999999999 9999999
Q ss_pred CcEEeeEeeeeccc-cceeeecC----CCCCceeEEEe
Q 007929 551 DPVVSFRETVLEKS-CRTVMSKS----PNKHNRRSCRG 583 (584)
Q Consensus 551 ~p~V~yrETi~~~~-~~~~~~~~----~n~~~~~~~~~ 583 (584)
+|+|+|||||++++ +.....+. .++++++++++
T Consensus 485 ~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ 522 (704)
T 2rdo_7 485 KPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDM 522 (704)
T ss_pred CCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEE
Confidence 99999999999877 65555543 34556677654
No 5
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=8.6e-77 Score=672.19 Aligned_cols=472 Identities=26% Similarity=0.370 Sum_probs=377.5
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~ 83 (584)
.+..+|+| +||+|+|||||+++|++.++.+.+.+. .+.+++|+.+.|++||+|+.+....+.|.
T Consensus 8 ~~~~~I~I---vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~----------- 73 (693)
T 2xex_A 8 EKTRNIGI---MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE----------- 73 (693)
T ss_dssp TTEEEEEE---ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET-----------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC-----------
Confidence 46789999 999999999999999998888765431 13578999999999999999999999988
Q ss_pred cCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCH
Q 007929 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (584)
Q Consensus 84 ~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~ 163 (584)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.++..+|+++.+.++|+++|+||+|+..
T Consensus 74 -----~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~------- 141 (693)
T 2xex_A 74 -----GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLG------- 141 (693)
T ss_dssp -----TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTT-------
T ss_pred -----CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccc-------
Confidence 89999999999999999999999999999999999999999999999999889999999999999984
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCC--cceeeehhhHHHHhhhhcCCChHhHHHHhhcCcc
Q 007929 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGL--HGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 241 (584)
Q Consensus 164 ~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~--~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~ 241 (584)
.++.+++++++..+. . ...| .++|++.+. .++ +|+.....++
T Consensus 142 ----~~~~~~~~~l~~~l~--------~-~~~~--~~ipisa~~~~~~l----------------~d~l~~~~~~----- 185 (693)
T 2xex_A 142 ----ANFEYSVSTLHDRLQ--------A-NAAP--IQLPIGAEDEFEAI----------------IDLVEMKCFK----- 185 (693)
T ss_dssp ----CCHHHHHHHHHHHHC--------C-CEEE--SEEEECCGGGCCEE----------------EETTTTEEEE-----
T ss_pred ----cchHHHHHHHHHHhC--------C-Ccee--EEeecccCCCccee----------------eeeecceeEE-----
Confidence 346667788887773 1 1112 255655422 222 3333332233
Q ss_pred cC-cCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhcc
Q 007929 242 FD-PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWLP 319 (584)
Q Consensus 242 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~P 319 (584)
|+ ..+..+... .++..|.+++...|++|++.+++.||++||+||++ .+++.+++. .++++.+.. +++|
T Consensus 186 ~~~~~~~~~~~~-----~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~--~~~~~~~~~---~~l~~~~~~~~~~P 255 (693)
T 2xex_A 186 YTNDLGTEIEEI-----EIPEDHLDRAEEARASLIEAVAETSDELMEKYLGD--EEISVSELK---EAIRQATTNVEFYP 255 (693)
T ss_dssp CCSSSSCSCEEE-----CCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTT--CCCCHHHHH---HHHHHHHHTTSCEE
T ss_pred eccCCCceeEEe-----cCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeee
Confidence 32 212223322 36788999999999999999999999999999998 899999887 677777664 7889
Q ss_pred c----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEE
Q 007929 320 A----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGR 389 (584)
Q Consensus 320 ~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~R 389 (584)
+ ++.|||+|++++|+|.+++.++.. .+. ++ .....+.|++++||+|+|||++.|++.|+ ++|+|
T Consensus 256 v~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~--~~~--~~-~~~~~~~~~~~~p~~a~VfK~~~d~~~g~-~~~~R 329 (693)
T 2xex_A 256 VLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGH--RAS--NP-EEEVIAKADDSAEFAALAFKVMTDPYVGK-LTFFR 329 (693)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEE--ETT--EE-EEEEEECSCTTSCCEEEEEEEEEETTTEE-EEEEE
T ss_pred EEEeecccCcCHHHHHHHHHHHCCCchhccccccc--CCC--cc-ccceeecCCCCCceEEEEEEeeecCCCce-EEEEE
Confidence 6 689999999999999886554321 010 10 12346789999999999999999999998 99999
Q ss_pred eEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCcc
Q 007929 390 VFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAH 468 (584)
Q Consensus 390 V~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~ 468 (584)
||||+|++||.|+ |.+++++ ++|++|+.++|++++++++|.|||||+|.||+++ .+| |||+.. .+.
T Consensus 330 V~sG~l~~g~~v~----~~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdTl~~~~--~~~ 396 (693)
T 2xex_A 330 VYSGTMTSGSYVK----NSTKGKR-----ERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT--GTGDTLCGEK--NDI 396 (693)
T ss_dssp EEESEEETTEEEE----ETTTTEE-----EEECCEEEECSSCEEECSEEETTCEEEEESCSSC--CTTCEEEETT--CCE
T ss_pred EEeeeEecCCEEE----ecCCCce-----EEeceEEEEeCCCceEccccCcCCEEEEeCcccC--ccCCEEecCC--Ccc
Confidence 9999999999999 5555555 6999999999999999999999999999999997 678 999977 677
Q ss_pred cccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceE
Q 007929 469 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEI 547 (584)
Q Consensus 469 ~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v 547 (584)
+++++.+| +|+++++|+|++++|++||.+||++|++|||+|+++++ ||||++|+||||||||++++||+++| |+++
T Consensus 397 ~~~~~~~~-~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~--~v~v 473 (693)
T 2xex_A 397 ILESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVEC 473 (693)
T ss_dssp ECCCCSSC-SCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHS--CCCE
T ss_pred ccCCcCCC-CceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceE
Confidence 88899988 79999999999999999999999999999999999995 89999999999999999999999999 9999
Q ss_pred EEcCcEEeeEeeeeccccceeeec
Q 007929 548 IKSDPVVSFRETVLEKSCRTVMSK 571 (584)
Q Consensus 548 ~~~~p~V~yrETi~~~~~~~~~~~ 571 (584)
.+++|+|+|||||++++....+.+
T Consensus 474 ~~~~p~V~yrEti~~~~~~~~~~~ 497 (693)
T 2xex_A 474 NVGAPMVSYRETFKSSAQVQGKFS 497 (693)
T ss_dssp EECCCEECCEEEESSCEEEEEEEE
T ss_pred EEeCCeEEEEEEeccccceeEeec
Confidence 999999999999998877655554
No 6
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=8.1e-77 Score=672.19 Aligned_cols=471 Identities=28% Similarity=0.391 Sum_probs=334.6
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEEeecchhhhhccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~ 82 (584)
..+.++|+| +||+|||||||+++|++.++.+.+.+. .+.+++|+.+.|+++++|+.+...++.|.
T Consensus 9 ~~~~~~I~I---vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~---------- 75 (691)
T 1dar_A 9 LKRLRNIGI---AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK---------- 75 (691)
T ss_dssp GGGEEEEEE---EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET----------
T ss_pred cccccEEEE---ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC----------
Confidence 356789999 999999999999999999887765432 23688999999999999999999999988
Q ss_pred ccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCC
Q 007929 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (584)
Q Consensus 83 ~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~ 162 (584)
++.++|||||||.+|..++.++++.+|++|+|||+++|++.++..+|+++.+.++|+++|+||+|+..
T Consensus 76 ------~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~------ 143 (691)
T 1dar_A 76 ------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG------ 143 (691)
T ss_dssp ------TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTT------
T ss_pred ------CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCccc------
Confidence 89999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCcccccc--CCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCc
Q 007929 163 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSA--GLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 240 (584)
Q Consensus 163 ~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s--~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~ 240 (584)
.++.+++++++..++ . ...| .++|++. +..||. |+....+++|
T Consensus 144 -----~~~~~~~~~l~~~l~--------~-~~~~--~~~Pi~~~~~~~g~~----------------d~~~~~~~~~--- 188 (691)
T 1dar_A 144 -----ADLWLVIRTMQERLG--------A-RPVV--MQLPIGREDTFSGII----------------DVLRMKAYTY--- 188 (691)
T ss_dssp -----CCHHHHHHHHHHTTC--------C-CEEE--CEEEESCGGGCCEEE----------------ETTTTEEEEE---
T ss_pred -----CCHHHHHHHHHHHhC--------C-Cccc--eeccccCCCcccchh----------------hhhcceeeEe---
Confidence 346677788877762 1 1122 2455543 345553 3333333333
Q ss_pred ccC-cCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhc
Q 007929 241 FFD-PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWL 318 (584)
Q Consensus 241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~ 318 (584)
+ ..+..+... .++..|.+++.++|++|++.+++.||++||+||++ .+++.+++. .++++.+.. +++
T Consensus 189 --~~~~g~~~~~~-----~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~--~~~~~~~~~---~~~~~~~~~~~~~ 256 (691)
T 1dar_A 189 --GNDLGTDIREI-----PIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEG--EEPTEEELV---AAIRKGTIDLKIT 256 (691)
T ss_dssp --CSTTSCCEEEE-----CCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTSCE
T ss_pred --ccCCCceeEEe-----cCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCcEe
Confidence 2 112223333 36788999999999999999999999999999998 899999987 667777664 788
Q ss_pred cc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEE
Q 007929 319 PA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFG 388 (584)
Q Consensus 319 P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~ 388 (584)
|+ ++.|||+|++++|+|.+++.++.... .+ ....+.|++++||+++|||++.|++.|+ ++|+
T Consensus 257 Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~-~~------~~~~~~~~~~~p~~~~Vfk~~~d~~~G~-~~~~ 328 (691)
T 1dar_A 257 PVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP-EG------EVVEIHPDPNGPLAALAFKIMADPYVGR-LTFI 328 (691)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS-SS------CEEEECCCTTSCCEEEEEEEEEETTTEE-EEEE
T ss_pred EEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCC-Cc------cccccccCCCCCcEEEEEEEEEcCCCCc-EEEE
Confidence 86 68999999999999988655443211 11 1246778999999999999999999998 9999
Q ss_pred EeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCc
Q 007929 389 RVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDA 467 (584)
Q Consensus 389 RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~ 467 (584)
|||||+|++||.|+ |.+++++ ++|++|+.++|++++++++|.|||||+|.||+++ .+| ||++.. .+
T Consensus 329 RV~sG~l~~g~~v~----~~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~--~~ 395 (691)
T 1dar_A 329 RVYSGTLTSGSYVY----NTTKGRK-----ERVARLLRMHANHREEVEELKAGDLGAVVGLKET--ITGDTLVGED--AP 395 (691)
T ss_dssp EEEESEEESSCEEE----ETTTTEE-----EECCEEEEECSSCEEEESEEETTCEEEEECCSSC--CTTCEEEETT--CC
T ss_pred EEeeeeEecCCEEE----ecCCCcE-----EEEceEEEEeCCCceEcceecCCCEEEEeCcccC--ccCCEEecCC--Cc
Confidence 99999999999999 5555555 6999999999999999999999999999999997 678 999977 56
Q ss_pred -ccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCc
Q 007929 468 -HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGA 545 (584)
Q Consensus 468 -~~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v 545 (584)
..++++.++ .|+++++|+|++++|++||.+||++|++|||+|+++++ ||||++|+||||||||++++||+++| |+
T Consensus 396 ~~~l~~~~~~-~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~--~v 472 (691)
T 1dar_A 396 RVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF--KV 472 (691)
T ss_dssp CCBCC---------------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCE--EE
T ss_pred ccccCCCCCC-CceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhh--Cc
Confidence 788888887 79999999999999999999999999999999999995 89999999999999999999999999 99
Q ss_pred eEEEcCcEEeeEeeeeccccceeeec
Q 007929 546 EIIKSDPVVSFRETVLEKSCRTVMSK 571 (584)
Q Consensus 546 ~v~~~~p~V~yrETi~~~~~~~~~~~ 571 (584)
++.+++|+|+|||||+++++...+.+
T Consensus 473 ~v~~~~p~V~yrEti~~~~~~~~~~~ 498 (691)
T 1dar_A 473 DANVGKPQVAYRETITKPVDVEGKFI 498 (691)
T ss_dssp BTTTBCCCBCCEEECSSCEEEEEEEE
T ss_pred eEEEeCCeEEEEEeeccceeeeeeec
Confidence 99999999999999998877655554
No 7
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=5.8e-79 Score=684.54 Aligned_cols=419 Identities=22% Similarity=0.295 Sum_probs=354.0
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCC--CeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAG--DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g--~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
..|||| +||+|||||||+++||+.+|.+.+.+.. +++++|++++|++|||||+++.+++.|+
T Consensus 2 IRNi~I---iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~------------- 65 (638)
T 3j25_A 2 IINIGV---LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE------------- 65 (638)
T ss_dssp CCCCEE---ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS-------------
T ss_pred eeEEEE---EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC-------------
Confidence 468999 9999999999999999999999887542 5789999999999999999999999999
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 165 (584)
+++|||||||||.||..|+.++|+++|+||+||||++|+++||+.+|++|.+.++|+++||||||+..
T Consensus 66 ---~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~--------- 133 (638)
T 3j25_A 66 ---NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNG--------- 133 (638)
T ss_dssp ---SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSS---------
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEecccccc---------
Confidence 89999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcC
Q 007929 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~ 245 (584)
+++.+++++++..|. . .+.+..... +|.+..
T Consensus 134 --a~~~~~~~~i~~~l~--------~--------~~~~~~~~~---------------------------~~~~~~---- 164 (638)
T 3j25_A 134 --IDLSTVYQDIKEKLS--------A--------EIVIKQKVE---------------------------LYPNVC---- 164 (638)
T ss_dssp --CCSHHHHHHHHHTTC--------C--------CCCCCCCCC---------------------------SCGGGC----
T ss_pred --CCHHHHHHHHHHHhC--------C--------CccccceeE---------------------------eecccc----
Confidence 455667777777762 1 011100000 010000
Q ss_pred CCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-Hhhccc----
Q 007929 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA---- 320 (584)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~-~~~~P~---- 320 (584)
.. ... ..++.+.+++.||++|++|+++ ..++..++. ..+...+. ..++|+
T Consensus 165 ~~----------~~~----------~~~~~e~~~e~~d~l~e~~~~~--~~~~~~~~~---~~~~~~~~~~~~~Pv~~gS 219 (638)
T 3j25_A 165 VT----------NFT----------ESEQWDTVIEGNDDLLEKYMSG--KSLEALELE---QEESIRFQNCSLFPLYHGS 219 (638)
T ss_dssp CC----------CCC----------CHHHHHHHHHHHCHHHHHHHHH--CCCCSHHHH---HHHHHHHHHTSCCCCCCCC
T ss_pred cc----------ccc----------hhhhhhhhhcccHHHHhhhccC--CccchHHHH---HHHhhhhcccccccccccc
Confidence 00 000 1235678888999999999999 888888876 44555544 378886
Q ss_pred ------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeee
Q 007929 321 ------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGK 394 (584)
Q Consensus 321 ------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGt 394 (584)
++.|||+|++++|+|.. ++++||+++|||+..|++.|+ ++|+|||||+
T Consensus 220 a~~~~Gv~~LLd~i~~~~p~p~~-------------------------~~~~~~~~~Vfk~~~d~~~G~-la~~RV~sG~ 273 (638)
T 3j25_A 220 AKSNIGIDNLIEVITNKFYSSTH-------------------------RGPSELCGNVFKIEYTKKRQR-LAYIRLYSGV 273 (638)
T ss_dssp STTCCSHHHHHHHHHHSCCCSGG-------------------------GSCCCCCBEEBCCCCCSTTCC-CCBCCBSSBC
T ss_pred cccCCCchhHhhhhhccccCccc-------------------------chhhhhcceeeeeeeeccCce-EEEEEEEcCc
Confidence 79999999999999964 245799999999999999998 9999999999
Q ss_pred eecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCCCccccccc
Q 007929 395 VATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAM 473 (584)
Q Consensus 395 Lk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~~~~~~~~~ 473 (584)
|++||.|++. +.+ + +++.+++.++|++++++++|.|||||++.| .. .++| |+++.. ....+..+
T Consensus 274 l~~g~~v~~~----~~~-~-----~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~--~~~~~tl~d~~--~~~~~~~i 338 (638)
T 3j25_A 274 LHLRDSVRVS----EKE-K-----IKVTEMYTSINGELCKIDRAYSGEIVILQN-EF--LKLNSVLGDTK--LLPQRKKI 338 (638)
T ss_dssp CCSCCCSSSC----CCC-C-----SSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SS--CSSEECSSSSS--SGGGCSCC
T ss_pred ccCCCccccc----cCc-c-----eeEEeeecccccccccccccccceEEEEec-cc--cccCceecCCC--CcccccCc
Confidence 9999999842 222 2 489999999999999999999999999988 33 2666 788876 55666777
Q ss_pred ccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCc
Q 007929 474 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDP 552 (584)
Q Consensus 474 ~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p 552 (584)
.+| +|+++++|+|++++|++||.+||++|++|||+|+++.+ +|||++|+|||||||||+++||+++| |++|++++|
T Consensus 339 ~~p-~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~ef--gvev~~~~P 415 (638)
T 3j25_A 339 ENP-HPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY--HVEIELKEP 415 (638)
T ss_dssp CCC-CCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTT--CCCCEEECC
T ss_pred cCC-CccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHh--CCcEEEeCC
Confidence 776 89999999999999999999999999999999999985 89999999999999999999999999 999999999
Q ss_pred EEeeEeeeeccccceeeecC
Q 007929 553 VVSFRETVLEKSCRTVMSKS 572 (584)
Q Consensus 553 ~V~yrETi~~~~~~~~~~~~ 572 (584)
+|+|||||.++++...+..+
T Consensus 416 ~V~yrEti~~~~~~~~~~~~ 435 (638)
T 3j25_A 416 TVIYMERPLKNAEYTIHIEV 435 (638)
T ss_dssp CCCCCBCCCSCCEECCCCCS
T ss_pred ceeEEEEecccceEEEEEec
Confidence 99999999998876655544
No 8
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=2.1e-69 Score=609.64 Aligned_cols=452 Identities=23% Similarity=0.300 Sum_probs=378.5
Q ss_pred CCccc-cceeeEEecccccCCCCChhHHHHHHHHHcCccccccC--CCeeeeCChhhHhhhccceecceEEEEeecchhh
Q 007929 1 MSSYC-FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAA 77 (584)
Q Consensus 1 ~~~~~-~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~ 77 (584)
|.+.. .+..+|+| +||+|+|||||+++|++..+.+...+. .+.+++|+.+.|+++|+|+......+.|.
T Consensus 1 ~~s~~~~~~~~i~I---iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~----- 72 (665)
T 2dy1_A 1 MGTEGGAMIRTVAL---VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR----- 72 (665)
T ss_dssp -----CCCEEEEEE---EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET-----
T ss_pred CCCCccCCCcEEEE---ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC-----
Confidence 44443 45678999 999999999999999988876554432 13578999999999999999998888887
Q ss_pred hhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccc
Q 007929 78 LKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL 157 (584)
Q Consensus 78 ~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~ 157 (584)
++.+||||||||.+|..++.++++.+|++++|+|+.+|+..++..+|+.+...++|+++|+||+|+. .
T Consensus 73 -----------~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~ 140 (665)
T 2dy1_A 73 -----------GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-G 140 (665)
T ss_dssp -----------TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-C
T ss_pred -----------CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-h
Confidence 8999999999999999999999999999999999999999999999999988999999999999986 2
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhh
Q 007929 158 ELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLW 237 (584)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~ 237 (584)
.+.+++++++..+ + ...| .++|++.+....+ .+|+..... |
T Consensus 141 -----------~~~~~~~~l~~~l--------~--~~~~--~~~Pi~~~~~~~g--------------~~d~~~~~~--~ 181 (665)
T 2dy1_A 141 -----------DYYALLEDLRSTL--------G--PILP--IDLPLYEGGKWVG--------------LIDVFHGKA--Y 181 (665)
T ss_dssp -----------CHHHHHHHHHHHH--------C--SEEE--CEEEEEETTEEEE--------------EEETTTTEE--E
T ss_pred -----------hHHHHHHHHHHHh--------C--Ccce--EEeeecCCCcccc--------------hhhhhhhhe--e
Confidence 2455666666666 2 1222 2566655322111 134433333 3
Q ss_pred cCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-h
Q 007929 238 GENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-T 316 (584)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~ 316 (584)
+|+. + .+... .++..|.++++++|++|++.+++.|+++|++|+++ ++++.+++. .++++.++. +
T Consensus 182 ---~~~~-g-~~~~~-----~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~--~~l~~~~~~---~~~~~~~~~~~ 246 (665)
T 2dy1_A 182 ---RYEN-G-EEREA-----EVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEG--EEVTGEALE---KAFHEAVRRGL 246 (665)
T ss_dssp ---EEET-T-EEEEE-----CCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTS
T ss_pred ---ecCC-C-ceeEe-----cCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCC
Confidence 3333 1 24433 36788999999999999999999999999999998 899999988 677777664 7
Q ss_pred hccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeE
Q 007929 317 WLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFA 386 (584)
Q Consensus 317 ~~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~ 386 (584)
|+|+ ++.|||+|++++|+|.+. ++++||+++|||++.+++.|+ ++
T Consensus 247 ~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~------------------------~~~~p~~~~V~k~~~d~~~G~-~~ 301 (665)
T 2dy1_A 247 LYPVALASGEREIGVLPLLELILEALPSPTER------------------------FGDGPPLAKVFKVQVDPFMGQ-VA 301 (665)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH------------------------HCSCSCEEEEEEEEEETTTEE-EE
T ss_pred eeEEEEeecccCcCHHHHHHHHHHhCCCcccc------------------------CCCCCeEEEEEEEEEcCCCCe-EE
Confidence 8885 689999999999999752 146899999999999999998 99
Q ss_pred EEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCCC
Q 007929 387 FGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV 465 (584)
Q Consensus 387 ~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~~ 465 (584)
|+|||||+|++||.|++ .+ .+ ++|++|+.++|++.+++++|.|||||++.|++++ .+| ||++..
T Consensus 302 ~~rV~sG~l~~g~~v~~----~~--~~-----~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~--~~Gdtl~~~~-- 366 (665)
T 2dy1_A 302 YLRLYRGRLKPGDSLQS----EA--GQ-----VRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL--HRGMVLWQGE-- 366 (665)
T ss_dssp EEEEEESEECTTEEEBC----TT--SC-----EEESSEEEEETTEEEEESCEETTCEEEESSCTTC--CTTCEEESSS--
T ss_pred EEEEcccEEecCCEEEc----CC--Ce-----EEEeEEEEEeCCCeeECCEECCCCEEEEeCCccC--ccCCEEecCC--
Confidence 99999999999999993 32 23 6999999999999999999999999999999986 688 999876
Q ss_pred Cc--ccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEc-CCCcEEEEecChhhHHHHHHHHHHhhC
Q 007929 466 DA--HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFM 542 (584)
Q Consensus 466 ~~--~~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~il~g~GelHLe~~l~rL~~~f~ 542 (584)
.+ .+++++.++ .|+++++|+|++++|++||.+||++|.+|||+|+++.+ ||||++|+||||+|||++++||+ +|
T Consensus 367 ~~~~~~l~~~~~~-~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~- 443 (665)
T 2dy1_A 367 KPESEEVPFARLP-DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DY- 443 (665)
T ss_dssp CCCGGGSCCCCCC-CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HT-
T ss_pred CccccccCCCCCC-CceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HC-
Confidence 55 678888888 79999999999999999999999999999999999995 89999999999999999999999 99
Q ss_pred CCceEEEcCcEEeeEeeeeccccceeee
Q 007929 543 GGAEIIKSDPVVSFRETVLEKSCRTVMS 570 (584)
Q Consensus 543 ~~v~v~~~~p~V~yrETi~~~~~~~~~~ 570 (584)
++++.+++|+|+|||||++++....+.
T Consensus 444 -~v~v~~~~p~V~yrEti~~~~~~~~~~ 470 (665)
T 2dy1_A 444 -GVEVEFSVPKVPYRETIKKVAEGQGKY 470 (665)
T ss_dssp -TCCEEEECCCCCCEEEESSCEEEEEEE
T ss_pred -CceEEEeCCEEEEEEeeccceeeeeec
Confidence 999999999999999999877654443
No 9
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=8.6e-67 Score=572.40 Aligned_cols=444 Identities=19% Similarity=0.258 Sum_probs=321.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccC------CCeeeeCChhhHhhhccceecceEEEEeecchhhhh
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA------GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~------g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~ 79 (584)
.+.++|+| +||+|+|||||+++|++..+.+.+.+. ...+++|+.+.|++||+|+.+....+.|.
T Consensus 11 ~~~~~I~I---iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~------- 80 (529)
T 2h5e_A 11 AKRRTFAI---ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH------- 80 (529)
T ss_dssp HTEEEEEE---EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET-------
T ss_pred cCCCEEEE---ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC-------
Confidence 45789999 999999999999999998887754322 12568899999999999999999999998
Q ss_pred cccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccc
Q 007929 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 159 (584)
Q Consensus 80 ~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~ 159 (584)
++.++|||||||.+|..++.++++.+|++|+|+|+.+|++.++..+|+.+...++|+++|+||+|+..
T Consensus 81 ---------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~--- 148 (529)
T 2h5e_A 81 ---------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDI--- 148 (529)
T ss_dssp ---------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCC---
T ss_pred ---------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcc---
Confidence 89999999999999999999999999999999999999999999999998888999999999999984
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcC
Q 007929 160 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 239 (584)
Q Consensus 160 ~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~ 239 (584)
.+..+++++++..++ . ...| .++|++|+..+.|. .|+.....+.|.+
T Consensus 149 --------~~~~~~~~~i~~~l~--------~-~~~~--~~~pi~sa~~~~Gv--------------~dl~~~~~~~~~~ 195 (529)
T 2h5e_A 149 --------RDPMELLDEVENELK--------I-GCAP--ITWPIGCGKLFKGV--------------YHLYKDETYLYQS 195 (529)
T ss_dssp --------SCHHHHHHHHHHHHC--------C-EEEE--SEEEESCGGGCCEE--------------EETTTTEEEECCT
T ss_pred --------ccHHHHHHHHHHHhC--------C-Cccc--eecceecccCccee--------------eehhhhhHhhhcc
Confidence 223455667777762 1 2334 36788888766654 2343333333421
Q ss_pred cccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-Hhhc
Q 007929 240 NFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWL 318 (584)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~-~~~~ 318 (584)
. .+..+... ..++ .+. ++ +|.+. .+++++++|+++ .++..+++. ..+.+++. ..++
T Consensus 196 ~----~g~~~~~~----~~i~-~~~----~~--~l~e~---~~~~~~~~~~e~--~~l~~~~~~---~~~~~~~~~~~~~ 252 (529)
T 2h5e_A 196 G----KGHTIQEV----RIVK-GLN----NP--DLDAA---VGEDLAQQLRDE--LELVKGASN---EFDKELFLAGEIT 252 (529)
T ss_dssp T----CCSSCCCC----CEEC-CSS----CH--HHHHH---HCHHHHHHHHHH--HHHHHHHSC---CCCHHHHHTTSEE
T ss_pred c----CCCccccc----ccCC-CCC----HH--HHHHh---hCHHHHHHhhcc--cchhhhhhh---hhhHHHHHhCcee
Confidence 0 00000000 0111 000 10 22222 267788999888 555444332 12233333 2677
Q ss_pred cc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCC-CCCeEEEEEeeee---cCCCCce
Q 007929 319 PA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDP-EGPLMLYVSKMIP---ASDKGRF 384 (584)
Q Consensus 319 P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pl~~~VfK~~~---~~~~g~~ 384 (584)
|+ ++.|||+|++++|+|.+.... ...+++ ++||+++|||+.. +++.|+
T Consensus 253 Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~-----------------~~~~~~~~~~~~~~vfKi~~~~d~~~~G~- 314 (529)
T 2h5e_A 253 PVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD-----------------TRTVEASEDKFTGFVFKIQANMDPKHRDR- 314 (529)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS-----------------SCEECTTCCSCEEEEEEECSSCCSSSSCC-
T ss_pred EEEeeecccCCCHHHHHHHHHHhCCCCCccccc-----------------ccccCCCCCCeEEEEEEEeeccCcCCCce-
Confidence 75 689999999999999754210 011223 6899999999976 356788
Q ss_pred eEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCC
Q 007929 385 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 385 l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~ 463 (584)
++|+|||||+|++||.|++. +.+++ ++|++++.++|.+++++++|.|||||++.|++++ ++| |||+.+
T Consensus 315 i~~~RV~sG~l~~g~~v~~~----~~~~~-----~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~--~~Gdtl~~~~ 383 (529)
T 2h5e_A 315 VAFMRVVSGKYEKGMKLRQV----RTAKD-----VVISDALTFMAGDRSHVEEAYPGDILGLHNHGTI--QIGDTFTQGE 383 (529)
T ss_dssp CEEEEEEESCEETTCEEEET----TTTEE-----EECSCEECCCC-----CCEECTTCEEEECCSSCC--CTTCEEESSC
T ss_pred EEEEEEecCeEcCCCEEEEe----eCCCE-----EEeceeeEEeCCCceEcceECCCCEEEEeccCCC--ccCCEeecCC
Confidence 99999999999999999954 44444 6999999999999999999999999999999997 788 999865
Q ss_pred CCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEE-cCCCcEEEEecChhhHHHHHHHHHHhhC
Q 007929 464 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFM 542 (584)
Q Consensus 464 ~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~-~etge~il~g~GelHLe~~l~rL~~~f~ 542 (584)
...++++.++ +|+++++|+|+++.|++||.+||++|++||| +.+.+ ++|||++|+|||||||||+++||+++|
T Consensus 384 ---~~~~~~~~~~-~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey- 457 (529)
T 2h5e_A 384 ---MMKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEY- 457 (529)
T ss_dssp ---CCCBCCCEEE-CCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHS-
T ss_pred ---ccccCCCCCC-CccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHh-
Confidence 3567788777 7999999999999999999999999999998 88887 589999999999999999999999999
Q ss_pred CCceEEEcCcEEeeEeeeecc
Q 007929 543 GGAEIIKSDPVVSFRETVLEK 563 (584)
Q Consensus 543 ~~v~v~~~~p~V~yrETi~~~ 563 (584)
||++.+++|+|+|||||...
T Consensus 458 -~v~v~~~~~~v~y~eti~~~ 477 (529)
T 2h5e_A 458 -NVEAVYESVNVATARWVECA 477 (529)
T ss_dssp -SCCEEEECCCCSEEEEEECS
T ss_pred -CcEEEEecCceeEEEEEcCC
Confidence 99999999999999999654
No 10
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=7.5e-66 Score=564.33 Aligned_cols=443 Identities=19% Similarity=0.247 Sum_probs=346.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccC------CCeeeeCChhhHhhhccceecceEEEEeecchhhhh
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA------GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~------g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~ 79 (584)
.+..+|+| +||+|+|||||+++|++.+|.+.+.+. ...+++|+.+.|++||+|+.++...+.|.
T Consensus 11 ~~~r~IaI---iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~------- 80 (528)
T 3tr5_A 11 AMRRTFAI---ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK------- 80 (528)
T ss_dssp HTEEEEEE---EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET-------
T ss_pred hcCCEEEE---ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC-------
Confidence 45679999 999999999999999999998865532 13568899999999999999999999998
Q ss_pred cccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccc
Q 007929 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 159 (584)
Q Consensus 80 ~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~ 159 (584)
++.++|||||||.+|..++.++++.+|+||+|+|+++|++.++..+|+++...++|+++|+||+|+..
T Consensus 81 ---------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~--- 148 (528)
T 3tr5_A 81 ---------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDT--- 148 (528)
T ss_dssp ---------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCC---
T ss_pred ---------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc---
Confidence 89999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcC
Q 007929 160 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 239 (584)
Q Consensus 160 ~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~ 239 (584)
++..+.++++...+ +. .+.|. ++|++.+....+ .+|+..+..+.|.+
T Consensus 149 --------~~~~~~l~ei~~~l--------~~-~~~~~--~~pig~~~~f~g--------------v~dl~~~~~~~~~~ 195 (528)
T 3tr5_A 149 --------RPSIELLDEIESIL--------RI-HCAPV--TWPIGMGKYFKG--------------IYHLIEDAIYLYQP 195 (528)
T ss_dssp --------SCHHHHHHHHHHHH--------CC-EEEES--EEEESCGGGCCE--------------EEETTTTEEEECCT
T ss_pred --------ccHHHHHHHHHHhh--------CC-Cceee--ecccccCCceeE--------------EEEeecCEEEEecC
Confidence 33445566666666 21 23443 677776654333 25666666666642
Q ss_pred cccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-Hhhc
Q 007929 240 NFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWL 318 (584)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~-~~~~ 318 (584)
.. ....... +++..+. ++ .+-+.+. ++ +++|+++ .++..++.... +.+++. ..++
T Consensus 196 ~~----~~~~~~~-----~~~~~~~----~~--~~~~~l~---~~-~~~~~e~--~~l~~~~~~~~---~~~~~~~~~~~ 251 (528)
T 3tr5_A 196 GK----HERVGES-----ERIEGIN----NP--ELDKKLG---DL-ASELRNE--IELVKGASHPF---EREGYLKGELT 251 (528)
T ss_dssp TS----SSSTTCS-----CEEECTT----CH--HHHHHHT---HH-HHHHHHH--HHHHHHHSCCC---CHHHHHTTSEE
T ss_pred CC----CCccccc-----ccccccc----hH--HHHHHHH---HH-HHHHhhh--cchhhhhhhHH---HHHHHhcCcee
Confidence 11 1111000 1222211 11 1122222 12 6777776 33333222111 133333 3677
Q ss_pred cc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccC-CCCCeEEEEEeeee--cC-CCCce
Q 007929 319 PA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD-PEGPLMLYVSKMIP--AS-DKGRF 384 (584)
Q Consensus 319 P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pl~~~VfK~~~--~~-~~g~~ 384 (584)
|+ ++.|||++++++|+|.+..... ..++ .++||+|+|||+.. || +.|+
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~-----------------~~~~~~~~~~~~~VFKi~~~~dp~~~g~- 313 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS-----------------RLVKPEEEKFSGFVFKIQANMDPGHRDR- 313 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS-----------------SCBCTTSSSCEEEEEEEEECCC-CCCCE-
T ss_pred EEEeccccCCccHHHHHHHHHHhCCCCCcccccc-----------------eeeCCCcccceeEEEEEecccCccCCce-
Confidence 76 7999999999999997542210 1112 36899999999985 78 8898
Q ss_pred eEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCC
Q 007929 385 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 385 l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~ 463 (584)
++|+|||||+|++|+.|+ |.+++++ ++|++++.++|++++++++|.|||||++.|++++ ++| |||+..
T Consensus 314 l~~~RV~sG~l~~g~~v~----~~~~~~~-----~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~--~~GDtl~~~~ 382 (528)
T 3tr5_A 314 IAFLRIASGQYQKGMKAY----HVRLKKE-----IQINNALTFMAGKRENAEEAWPGDIIGLHNHGTI--QIGDTFTQGE 382 (528)
T ss_dssp EEEEEEEESCEETTEEEE----ETTTTEE-----EEESSCBCCBTTCSSCCSEECTTCEEEEEESSSC--CTTCEEESSC
T ss_pred EEEEEEecCeEcCCCEEE----ecCCCce-----EEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCC--ccCCEEcCCC
Confidence 999999999999999999 5555655 6999999999999999999999999999999986 888 999843
Q ss_pred CCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEE-cCCCcEEEEecChhhHHHHHHHHHHhhC
Q 007929 464 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFM 542 (584)
Q Consensus 464 ~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~-~etge~il~g~GelHLe~~l~rL~~~f~ 542 (584)
+..+.++.++ .|++.++|+|++++|++||.+||++|++|||+ .+.+ ++|||++|+|||||||||+++||+++|
T Consensus 383 ---~~~~~~~~~~-~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey- 456 (528)
T 3tr5_A 383 ---RFKFTGIPNF-ASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEY- 456 (528)
T ss_dssp ---CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHH-
T ss_pred ---CcccCCCCCC-CCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHh-
Confidence 5667777777 79999999999999999999999999999997 6666 589999999999999999999999999
Q ss_pred CCceEEEcCcEEeeEeeeecc
Q 007929 543 GGAEIIKSDPVVSFRETVLEK 563 (584)
Q Consensus 543 ~~v~v~~~~p~V~yrETi~~~ 563 (584)
||+|.+++|+|+|+|+|...
T Consensus 457 -~v~v~~~~~~v~~~~~i~~~ 476 (528)
T 3tr5_A 457 -NVKCVYESVNVVTARWVICD 476 (528)
T ss_dssp -CCCEEEECCSCCEEEEEECS
T ss_pred -CcEEEEecCceEEEEEecCC
Confidence 99999999999999999753
No 11
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=3.1e-59 Score=515.92 Aligned_cols=365 Identities=28% Similarity=0.469 Sum_probs=282.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+..+|+| +||+|||||||+++|++.+|.+.+...+ .+++|+.+.|++||+|+.+..+.+.|.. .
T Consensus 4 ~~irnI~I---iGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGITI~~~~~~~~~~~-----------~ 68 (600)
T 2ywe_A 4 KNVRNFCI---IAHVDHGKSTLADRLLEYTGAISEREKR-EQLLDTLDVERERGITVKMQAVRMFYKA-----------K 68 (600)
T ss_dssp GGEEEEEE---ECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEEC-----------T
T ss_pred cCceEEEE---ECCCCCCHHHHHHHHHhccCCccccccc-ccccccchhhhcccceeeeeEEEEEEEc-----------C
Confidence 35679999 9999999999999999999988766443 6889999999999999999999998872 1
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 165 (584)
++..+.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|..+...++|+++|+||||+.. .
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~----a---- 140 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPS----A---- 140 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTT----C----
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccc----c----
Confidence 23358999999999999999999999999999999999999999999999999999999999999999984 2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcC
Q 007929 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~ 245 (584)
++.++.+++...+ + +.+. .+.+.|+..|.+
T Consensus 141 ---~~~~v~~el~~~l--------g---~~~~--~vi~vSAktg~G---------------------------------- 170 (600)
T 2ywe_A 141 ---DVDRVKKQIEEVL--------G---LDPE--EAILASAKEGIG---------------------------------- 170 (600)
T ss_dssp ---CHHHHHHHHHHTS--------C---CCGG--GCEECBTTTTBS----------------------------------
T ss_pred ---CHHHHHHHHHHhh--------C---CCcc--cEEEEEeecCCC----------------------------------
Confidence 2333444444333 1 1110 123333322110
Q ss_pred CCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHH
Q 007929 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (584)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LL 325 (584)
+..||
T Consensus 171 ---------------------------------------------------------------------------I~~Ll 175 (600)
T 2ywe_A 171 ---------------------------------------------------------------------------IEEIL 175 (600)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------chHHH
Confidence 24578
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcC
Q 007929 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (584)
Q Consensus 326 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~ 405 (584)
+++++++|+|.. ++++||.++|||++.+++.|. ++++||++|+|++||.|++++
T Consensus 176 e~I~~~lp~p~~-------------------------~~~~pl~~lV~~~~~d~~~G~-v~~~rV~sG~l~~Gd~I~~~~ 229 (600)
T 2ywe_A 176 EAIVNRIPPPKG-------------------------DPQKPLKALIFDSYYDPYRGA-VAFVRIFDGEVKPGDKIMLMS 229 (600)
T ss_dssp HHHHHHSCCCCC-------------------------CTTSCCEEEEEEEEEETTTEE-EEEEEEEESEECTTCEEEETT
T ss_pred HHHHHhcccccc-------------------------cccCCcceeEEEEeecccceE-EEEEEEEeCEEecCCEEEecc
Confidence 888999999852 457899999999999999898 999999999999999999653
Q ss_pred CCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE-c---cCcccccce-EeccCCCCCc--ccccccccCCC
Q 007929 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQYITKNA-TLTNEKEVDA--HPIRAMKFSVS 478 (584)
Q Consensus 406 ~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~-g---l~~~~~~tg-Tl~~~~~~~~--~~~~~~~~~~~ 478 (584)
++.+ ++|.+++.+.+ +..+++++.||||+++. | ++++ ++| ||++.. .+ .+++.+.++ +
T Consensus 230 ----~~~~-----~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~--~~GDtl~~~~--~~~~~~l~~~~~~-~ 294 (600)
T 2ywe_A 230 ----TGKE-----YEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDI--RIGDTITHAK--NPTKEPVPGFQPA-K 294 (600)
T ss_dssp ----TTEE-----EECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSS--CTTCEEEESS--SCCSSCCSCCCCC-C
T ss_pred ----ccce-----EeeecccccCC-CceECCEEecCceeeeeccccchhhc--cCCCEEEeCC--CccccccCCCCCC-C
Confidence 3333 58999998876 58899999999999885 4 4564 778 999876 44 467788776 8
Q ss_pred ceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEe-----cChhhHHHHHHHHHHhhCCCceEEEcCcE
Q 007929 479 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPV 553 (584)
Q Consensus 479 Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g-----~GelHLe~~l~rL~~~f~~~v~v~~~~p~ 553 (584)
|+++++|+|.++.|.++|.+||++|.++||+|.++ .||+|.+++| |||||||++++||+++| |+++.+++|+
T Consensus 295 P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~g~~~~~~G~lHlei~~erl~re~--~~~v~~~~P~ 371 (600)
T 2ywe_A 295 PMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE-PESSPALGMGFRVGFLGLLHMEIVQERLEREY--GVKIITTAPN 371 (600)
T ss_dssp CCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS--CCCEEECCCE
T ss_pred cEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE-ECCccccccceEEEeccHHHHHHHHHHHHhhc--CceEEEEeee
Confidence 99999999999999999999999999999999997 4788877666 99999999999999999 9999999999
Q ss_pred EeeEeeeec
Q 007929 554 VSFRETVLE 562 (584)
Q Consensus 554 V~yrETi~~ 562 (584)
|+|||||++
T Consensus 372 V~yreti~~ 380 (600)
T 2ywe_A 372 VIYRVKKKF 380 (600)
T ss_dssp ECEEEEETT
T ss_pred EEEEEEecC
Confidence 999999984
No 12
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=7.6e-58 Score=505.92 Aligned_cols=366 Identities=27% Similarity=0.406 Sum_probs=278.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+..+|+| +||+|||||||+++|++.+|.+.+...+ .+++|+.+.|++||+|+.+..+.+.|.. .+
T Consensus 3 ~irnI~I---iGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGiTi~~~~~~~~~~~-----------~~ 67 (599)
T 3cb4_D 3 NIRNFSI---IAHIDHGKSTLSDRIIQICGGLSDREME-AQVLDSMDLERERGITIKAQSVTLDYKA-----------SD 67 (599)
T ss_dssp TEEEEEE---ECCC----CCHHHHHHHHTTC---------------------------CEEEEEEEC-----------TT
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHhcCCccccccc-ccccccchhhhcccceeeeeEEEEEEec-----------CC
Confidence 4578999 9999999999999999999988766443 6899999999999999999999999872 12
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~ 166 (584)
+.++.+||||||||.||..++.++++.+|+||+|||+++|++.||...|..+...++|+++|+||+|+.. .
T Consensus 68 g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~----a----- 138 (599)
T 3cb4_D 68 GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPA----A----- 138 (599)
T ss_dssp SCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTT----C-----
T ss_pred CCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccc----c-----
Confidence 3468999999999999999999999999999999999999999999999999999999999999999984 2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCC
Q 007929 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (584)
Q Consensus 167 ~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~ 246 (584)
+..++.+++...+. +.+. .+...|+..|.+
T Consensus 139 --~~~~v~~ei~~~lg-----------~~~~--~vi~vSAktg~G----------------------------------- 168 (599)
T 3cb4_D 139 --DPERVAEEIEDIVG-----------IDAT--DAVRCSAKTGVG----------------------------------- 168 (599)
T ss_dssp --CHHHHHHHHHHHTC-----------CCCT--TCEEECTTTCTT-----------------------------------
T ss_pred --cHHHHHHHHHHHhC-----------CCcc--eEEEeecccCCC-----------------------------------
Confidence 23334444444431 0010 122233321110
Q ss_pred CeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHHH
Q 007929 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (584)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LLd 326 (584)
++.|++
T Consensus 169 --------------------------------------------------------------------------I~~Ll~ 174 (599)
T 3cb4_D 169 --------------------------------------------------------------------------VQDVLE 174 (599)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------chhHHH
Confidence 255788
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCC
Q 007929 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (584)
Q Consensus 327 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~ 406 (584)
.+++++|+|.. ++++|+.++||+++.+++.|+ ++++||++|+|++||.+++.+
T Consensus 175 ~I~~~lp~p~~-------------------------~~~~p~~alI~d~~~d~~~G~-v~~~rV~sG~l~~Gd~v~~~~- 227 (599)
T 3cb4_D 175 RLVRDIPPPEG-------------------------DPEGPLQALIIDSWFDNYLGV-VSLIRIKNGTLRKGDKVKVMS- 227 (599)
T ss_dssp HHHHHSCCCCC-------------------------CTTSCCEEEEEEEEEETTTEE-EEEEEEEESCEESSCEEEETT-
T ss_pred HHhhcCCCccc-------------------------cccCCceeeeeeccccccccE-EEEEEEEeCEEecCCEEEecc-
Confidence 88999999952 467899999999999999998 999999999999999999653
Q ss_pred CCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE-c---cCcccccce-EeccCCCCCc--ccccccccCCCc
Q 007929 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQYITKNA-TLTNEKEVDA--HPIRAMKFSVSP 479 (584)
Q Consensus 407 n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~-g---l~~~~~~tg-Tl~~~~~~~~--~~~~~~~~~~~P 479 (584)
++.. ++|.+++.+.+. .++++++.||||+++. | ++++ ++| |+++.. .+ .+++.+.++ +|
T Consensus 228 ---~~~~-----~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~--~~GDtl~~~~--~~~~~~l~~~~~~-~P 293 (599)
T 3cb4_D 228 ---TGQT-----YNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGA--PVGDTLTLAR--NPAEKALPGFKKV-KP 293 (599)
T ss_dssp ---TCCE-----EECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGS--CTTCEEEESS--SCCSSCCTTCCCC-CC
T ss_pred ---ccce-----eEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccC--ccCCEeeecC--CccccccccccCC-Cc
Confidence 3443 589999988765 8899999999999885 4 4464 678 999876 44 567777776 89
Q ss_pred eEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEEcCCCcEEEEe-----cChhhHHHHHHHHHHhhCCCceEEEcCcEE
Q 007929 480 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVV 554 (584)
Q Consensus 480 v~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~il~g-----~GelHLe~~l~rL~~~f~~~v~v~~~~p~V 554 (584)
++.++++|.+..|.++|.++|++|.++||+|.++ ++|+|++++| |||||||++++||+++| |+++.+++|+|
T Consensus 294 ~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~gfr~g~lG~lhlei~~erl~~e~--~~~~~~~~P~V 370 (599)
T 3cb4_D 294 QVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE-PESSSALGFGFRCGFLGLLHMEIIQERLEREY--DLDLITTAPTV 370 (599)
T ss_dssp CEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS--CCCEEECCCEE
T ss_pred ceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE-eccccccccceEEEeccHHHHHHHHHHHHHHc--CceEEEEeeeE
Confidence 9999999999999999999999999999999997 6788877777 99999999999999999 99999999999
Q ss_pred eeEeeeeccc
Q 007929 555 SFRETVLEKS 564 (584)
Q Consensus 555 ~yrETi~~~~ 564 (584)
+|||||+..+
T Consensus 371 ~yreti~~g~ 380 (599)
T 3cb4_D 371 VYEVETTSRE 380 (599)
T ss_dssp CEEEEESSSC
T ss_pred EEEEEecCCc
Confidence 9999998754
No 13
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.3e-31 Score=288.20 Aligned_cols=287 Identities=19% Similarity=0.271 Sum_probs=210.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCcccccc----------CC-----CeeeeCChhhHhhhccceecceEEEE
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRQDEAERGITIKSTGISLY 70 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~r~~Ti~~~~~~~~ 70 (584)
...++|++ +||+|+|||||+++|++.++.+.+.. .| ..+++|..++|+++|+|++.....+.
T Consensus 15 k~~~~i~i---iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 15 KEHVNVVF---IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CceeEEEE---EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 46789999 99999999999999999999887653 11 24689999999999999999998888
Q ss_pred eecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCc-------hhHHHHHHHHHhcCC
Q 007929 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERI 143 (584)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~-------~~t~~~l~~~~~~~~ 143 (584)
+. ++.++|||||||.+|...+..+++.+|++|+|||+.+|.. .||.+++..+...++
T Consensus 92 ~~----------------~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v 155 (439)
T 3j2k_7 92 TE----------------KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV 155 (439)
T ss_pred cC----------------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCC
Confidence 77 7899999999999999999999999999999999999986 799999999888999
Q ss_pred c-eEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhh
Q 007929 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (584)
Q Consensus 144 p-~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~ 222 (584)
| +++++||||+.. .++....++++.+++...+..++..+...+ .+...|+..|++..
T Consensus 156 ~~iIvviNK~Dl~~------~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~-------~~i~iSA~~G~ni~--------- 213 (439)
T 3j2k_7 156 KHLIVLINKMDDPT------VNWSNERYEECKEKLVPFLKKVGFNPKKDI-------HFMPCSGLTGANLK--------- 213 (439)
T ss_pred CeEEEEeecCCCcc------cchHHHHHHHHHHHHHHHHHHhcccccCCe-------eEEEeeccCCcccc---------
Confidence 9 789999999963 122235566677777666643321100011 23334666655421
Q ss_pred hhcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHH
Q 007929 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (584)
Q Consensus 223 ~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~ 302 (584)
.+... + .|..+
T Consensus 214 --------~l~~~-----------------------~----------------------------~w~~g---------- 224 (439)
T 3j2k_7 214 --------EQSDF-----------------------C----------------------------PWYIG---------- 224 (439)
T ss_pred --------ccccc-----------------------c----------------------------cccCc----------
Confidence 00000 0 00001
Q ss_pred HHhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCC
Q 007929 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (584)
Q Consensus 303 ~~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g 382 (584)
..|++.+ +.+|+|.. +.++|+...|...+. +.|
T Consensus 225 -------------------~~L~~~l-~~i~~~~~-------------------------~~~~p~r~~v~~~~~--~~G 257 (439)
T 3j2k_7 225 -------------------LPFIPYL-DNLPNFNR-------------------------SVDGPIRLPIVDKYK--DMG 257 (439)
T ss_pred -------------------hHHHHHH-HhCCCCcc-------------------------CCCCCeEEEEEEEEc--CCC
Confidence 2234433 33666531 346889999888764 457
Q ss_pred ceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEE--EEccCcccccce-Ee
Q 007929 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA--MVGLDQYITKNA-TL 459 (584)
Q Consensus 383 ~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIva--v~gl~~~~~~tg-Tl 459 (584)
+ +..+||.+|+|++||.|.+++.+ .+ .+|.+|.. ...++++|.|||+|+ +.|++..-.+.| +|
T Consensus 258 ~-v~~G~v~~G~l~~Gd~v~~~p~~----~~-----~~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl 323 (439)
T 3j2k_7 258 T-VVLGKLESGSIFKGQQLVMMPNK----HN-----VEVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGFIL 323 (439)
T ss_pred e-EEEEEEEeeEEecCCEEEEccCC----ce-----EEEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcEEe
Confidence 7 99999999999999999987543 22 47777763 457899999999999 667765434667 88
Q ss_pred ccCC
Q 007929 460 TNEK 463 (584)
Q Consensus 460 ~~~~ 463 (584)
++++
T Consensus 324 ~~~~ 327 (439)
T 3j2k_7 324 CDPS 327 (439)
T ss_pred cCCC
Confidence 8865
No 14
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.97 E-value=5.4e-31 Score=281.03 Aligned_cols=294 Identities=23% Similarity=0.310 Sum_probs=205.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCcccc-ccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
..++|++ +||+|+|||||+++|++......+ ......+.+|..++|+++|+|++.....+.+.
T Consensus 10 ~~~~I~i---iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~------------- 73 (405)
T 2c78_A 10 PHVNVGT---IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA------------- 73 (405)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS-------------
T ss_pred CeEEEEE---EcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC-------------
Confidence 5689999 999999999999999874211000 00001235899999999999999987777666
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCccccccccCCHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGE 164 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~~~~~~~~~~ 164 (584)
++.++|||||||.+|...+..+++.+|++|+|||+.+|...||.++|..+...++| +++++||+|+.. +.
T Consensus 74 ---~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-----~~- 144 (405)
T 2c78_A 74 ---KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-----DP- 144 (405)
T ss_dssp ---SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-----CH-
T ss_pred ---CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-----cH-
Confidence 78999999999999999999999999999999999999999999999998888999 679999999972 11
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCc
Q 007929 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (584)
Q Consensus 165 ~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~ 244 (584)
..++.+.++++..+..+.. .+....+...|+..|++.. . .
T Consensus 145 ---~~~~~~~~~~~~~l~~~~~--------~~~~~~~i~~SA~~g~~v~--------------------~---------~ 184 (405)
T 2c78_A 145 ---ELLDLVEMEVRDLLNQYEF--------PGDEVPVIRGSALLALEQM--------------------H---------R 184 (405)
T ss_dssp ---HHHHHHHHHHHHHHHHTTS--------CTTTSCEEECCHHHHHHHH--------------------H---------H
T ss_pred ---HHHHHHHHHHHHHHHHhcc--------cccCCCEEEccHHHhhhhh--------------------c---------c
Confidence 2334444455555543211 0000112233443332100 0 0
Q ss_pred CCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHH
Q 007929 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~L 324 (584)
... +. + ... .|++.+..|
T Consensus 185 ~~~-~~---------~--------------------~~~--------------------------------~~~~~i~~L 202 (405)
T 2c78_A 185 NPK-TR---------R--------------------GEN--------------------------------EWVDKIWEL 202 (405)
T ss_dssp CTT-CC---------T--------------------TSC--------------------------------HHHHHHHHH
T ss_pred ccc-cc---------c--------------------CCC--------------------------------cccccHHHH
Confidence 000 00 0 000 111113678
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEc
Q 007929 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (584)
Q Consensus 325 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~ 404 (584)
++++.+++|+|.. +.++|+.+.|++++.+++.|+ ++++||+||+|++||.|.++
T Consensus 203 l~~l~~~lp~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~ 256 (405)
T 2c78_A 203 LDAIDEYIPTPVR-------------------------DVDKPFLMPVEDVFTITGRGT-VATGRIERGKVKVGDEVEIV 256 (405)
T ss_dssp HHHHHHHSCCCCC-------------------------CCSSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEE
T ss_pred HHHHHhhcCCCCC-------------------------CCCCCcEEEEEEEEEcCCCce-EEEEEEecccccCCCEEEEe
Confidence 9999999998842 346899999999888888898 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--ccCcccccce-EeccCC
Q 007929 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (584)
Q Consensus 405 ~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--gl~~~~~~tg-Tl~~~~ 463 (584)
+.+... .+ .+|.+|.. ...++++|.|||+|++. |++..-...| +|++++
T Consensus 257 ~~~~~~-~~-----~~V~~i~~----~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 257 GLAPET-RK-----TVVTGVEM----HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp SSSSSC-EE-----EEEEEEEE----TTEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred CCCCCe-ee-----EEEEEEEE----CCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 643100 12 47888763 23789999999999886 5532223677 888865
No 15
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.97 E-value=1.3e-31 Score=296.71 Aligned_cols=328 Identities=17% Similarity=0.184 Sum_probs=222.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc--
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE-- 84 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~-- 84 (584)
+..+|+| +||+|||||||+++|++.... +.. .+|+|.......+.|.............
T Consensus 4 r~~~V~I---vGh~d~GKTTLl~~L~~~~v~------------~~e----~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~ 64 (594)
T 1g7s_A 4 RSPIVSV---LGHVDHGKTTLLDHIRGSAVA------------SRE----AGGITQHIGATEIPMDVIEGICGDFLKKFS 64 (594)
T ss_dssp CCCEEEE---ECSTTSSHHHHHHHHHHHHHS------------CC--------CCCBTTEEEEEHHHHHHHSCGGGGGCG
T ss_pred CCcEEEE---ECCCCCcHHHHHHHHhcccCc------------ccc----CCceecccCeEEEeechhhhhccccccccc
Confidence 5678999 999999999999999864221 111 1456666555555443100000000000
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccc-c-----
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL-E----- 158 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~-~----- 158 (584)
.+.....++|||||||.+|..++.++++.+|++|+|+|+++|++.||.+.|+.+...++|+++|+||||+... .
T Consensus 65 v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~ 144 (594)
T 1g7s_A 65 IRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGR 144 (594)
T ss_dssp GGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTC
T ss_pred cccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCC
Confidence 0011236999999999999999999999999999999999999999999999998899999999999999731 0
Q ss_pred -----ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccC--------C--ccccccCCcceeeehhhHHHHhhh
Q 007929 159 -----LQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEK--------G--TVAFSAGLHGWAFTLTNFAKMYAS 223 (584)
Q Consensus 159 -----~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~--------~--~v~~~s~~~g~~~~~~~f~~~y~~ 223 (584)
.....+.+...|.+.+.++...|.... +.+.. . .+...|+..|.
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~g--------l~~e~~~~l~~~~~~vpvv~vSA~tG~------------- 203 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEG--------FESERFDRVTDFASQVSIIPISAITGE------------- 203 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT--------CEEEEGGGCSCTTTEEEEEECCTTTCT-------------
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--------cchHHHHHHHhccCcceEEEEeccCCC-------------
Confidence 001234445556655555554442110 00000 0 00001111100
Q ss_pred hcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHH
Q 007929 224 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 303 (584)
Q Consensus 224 ~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~ 303 (584)
T Consensus 204 -------------------------------------------------------------------------------- 203 (594)
T 1g7s_A 204 -------------------------------------------------------------------------------- 203 (594)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCc
Q 007929 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 383 (584)
Q Consensus 304 ~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~ 383 (584)
.+..||+++..++|+|.+. ...+++++|+.++|||++.+++.|+
T Consensus 204 ----------------GI~eLl~~I~~~~~~~~~~--------------------~l~~~~~~p~~~~V~~~~~d~g~G~ 247 (594)
T 1g7s_A 204 ----------------GIPELLTMLMGLAQQYLRE--------------------QLKIEEDSPARGTILEVKEETGLGM 247 (594)
T ss_dssp ----------------THHHHHHHHHHHHHHHCSG--------------------GGEECTTSBCEEEEEEEEEETTEEE
T ss_pred ----------------CchhHHHHHHhhccccchh--------------------hhccccCCCceeEEEEEEEeCCcEE
Confidence 0245666676666655321 0123567999999999999999898
Q ss_pred eeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEe--------cCCccccCccc--CCCEEEEEccCccc
Q 007929 384 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM--------GKKQETVEDVP--CGNTVAMVGLDQYI 453 (584)
Q Consensus 384 ~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~--------g~~~~~v~ea~--AGdIvav~gl~~~~ 453 (584)
++++||++|+|++||.|++.+. +... ..+|.+|+.+. |....++++|. ||++|++.||+++
T Consensus 248 -v~~~rV~~G~Lk~Gd~v~~~~~----~~~~---~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~- 318 (594)
T 1g7s_A 248 -TIDAVIYDGILRKDDTIAMMTS----KDVI---STRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV- 318 (594)
T ss_dssp -EEEEEEEESEEETTCEEEEEBS----SSEE---EEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB-
T ss_pred -EEEEEEeeCEEeeCCEEEECCC----CCce---eEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC-
Confidence 9999999999999999996542 2221 14899999873 66788999998 9999999999986
Q ss_pred ccce-EeccCCCCCcc--------cccccccCCCceEEEEEEeCCCCChhHHHHHHHHH
Q 007929 454 TKNA-TLTNEKEVDAH--------PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 503 (584)
Q Consensus 454 ~~tg-Tl~~~~~~~~~--------~~~~~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L 503 (584)
.+| ||+... ... .+..+... .+.+.+.|.+...+..+.|.++|.++
T Consensus 319 -~~Gd~l~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 319 -MAGSPLRVVT--DPEKVREEILSEIEDIKID-TDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp -CTTCEEEECS--SHHHHHHHHHHHHHTTSCB-CSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred -CCCCEEEecC--CHHHHHHHHHHHHHhcccc-cccccEEEEeCCCCCHHHHHHHHHhC
Confidence 778 887764 221 12333333 56788999999999999999999997
No 16
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.97 E-value=1.8e-31 Score=283.80 Aligned_cols=284 Identities=19% Similarity=0.259 Sum_probs=202.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +||+|+|||||+++|++......+......+.+|..++|+++|+|++.....+.+.
T Consensus 2 ~~~~I~i---iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 64 (397)
T 1d2e_A 2 PHVNVGT---IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA-------------- 64 (397)
T ss_dssp CEEEEEE---ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--------------
T ss_pred CeEEEEE---EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC--------------
Confidence 3578999 99999999999999987532110000001234788889999999999887766655
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCccccccccCCHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~ 165 (584)
++.++|||||||.+|...+..+++.+|++|+|||+.+|...||.++|..+...++| +++++||||+.. +.
T Consensus 65 --~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-----~~-- 135 (397)
T 1d2e_A 65 --ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-----DS-- 135 (397)
T ss_dssp --SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-----CH--
T ss_pred --CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-----CH--
Confidence 78999999999999999999999999999999999999999999999888888999 579999999972 11
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcC
Q 007929 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~ 245 (584)
..++.+.+++++.+..+.. .+....+...|+..|++
T Consensus 136 --~~~~~~~~~~~~~l~~~~~--------~~~~~~~i~~SA~~g~n---------------------------------- 171 (397)
T 1d2e_A 136 --EMVELVELEIRELLTEFGY--------KGEETPIIVGSALCALE---------------------------------- 171 (397)
T ss_dssp --HHHHHHHHHHHHHHHHTTS--------CTTTSCEEECCHHHHHT----------------------------------
T ss_pred --HHHHHHHHHHHHHHHHcCC--------CcccCcEEEeehhhccc----------------------------------
Confidence 2344444555555543211 00000122223322110
Q ss_pred CCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccc-hHHH
Q 007929 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPA-SSAL 324 (584)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~-~~~L 324 (584)
. .. ..|... +..|
T Consensus 172 -~-----------------------------------------------~~------------------~~~~~g~i~~L 185 (397)
T 1d2e_A 172 -Q-----------------------------------------------RD------------------PELGLKSVQKL 185 (397)
T ss_dssp -T-----------------------------------------------CC------------------TTTTHHHHHHH
T ss_pred -c-----------------------------------------------cC------------------CCccCCcHHHH
Confidence 0 00 001111 2568
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEc
Q 007929 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (584)
Q Consensus 325 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~ 404 (584)
++++.+++|+|.. +.++|+.+.|++++.+++.|. ++++||++|+|++||.|.++
T Consensus 186 l~~l~~~~p~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 186 LDAVDTYIPVPTR-------------------------DLEKPFLLPVESVYSIPGRGT-VVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp HHHHHHHSCCCCC-------------------------CTTSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEE
T ss_pred HHHHHHhCCCCCC-------------------------CCCCcEEEEEEEEEEeCCceE-EEEEEEeeceEeCCCEEEEe
Confidence 8999999998842 346899999999998899898 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--ccCcccccce-EeccCC
Q 007929 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (584)
Q Consensus 405 ~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--gl~~~~~~tg-Tl~~~~ 463 (584)
+.+. ..+ .+|.+|... ..++++|.|||+|++. |++..-...| +|++++
T Consensus 240 ~~~~--~~~-----~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 240 GHSK--NIR-----TVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp ETTE--EEE-----EEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred CCCC--CeE-----EEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 6421 112 478777532 3789999999999886 5532223677 888865
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.97 E-value=1.1e-31 Score=288.70 Aligned_cols=285 Identities=23% Similarity=0.329 Sum_probs=193.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCcccccc----------CC-----CeeeeCChhhHhhhccceecceEEEEe
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRQDEAERGITIKSTGISLYY 71 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~r~~Ti~~~~~~~~~ 71 (584)
..++|++ +||+|+|||||+++|++.++.+.+.. .| ..+++|..++|+++|+|++.....+.+
T Consensus 5 ~~~~I~i---iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~ 81 (435)
T 1jny_A 5 PHLNLIV---IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET 81 (435)
T ss_dssp CEEEEEE---EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC
T ss_pred CEEEEEE---EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec
Confidence 5689999 99999999999999999877665431 11 125689999999999999999888877
Q ss_pred ecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCc
Q 007929 72 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR 144 (584)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-------~~~~t~~~l~~~~~~~~p 144 (584)
. +++++|||||||.+|..++..+++.+|++|+|||+.+| +..||.+++..+...++|
T Consensus 82 ~----------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~ 145 (435)
T 1jny_A 82 K----------------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLD 145 (435)
T ss_dssp S----------------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCT
T ss_pred C----------------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCC
Confidence 7 78999999999999999999999999999999999999 888999999988888886
Q ss_pred -eEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhh
Q 007929 145 -PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 223 (584)
Q Consensus 145 -~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~ 223 (584)
+++++||||+...+ .+. ..++.+.++++..+..++.. |....+...|+..|.+.
T Consensus 146 ~iivviNK~Dl~~~~--~~~----~~~~~~~~~i~~~~~~~~~~--------~~~~~~i~iSA~~g~~v----------- 200 (435)
T 1jny_A 146 QLIVAVNKMDLTEPP--YDE----KRYKEIVDQVSKFMRSYGFN--------TNKVRFVPVVAPSGDNI----------- 200 (435)
T ss_dssp TCEEEEECGGGSSST--TCH----HHHHHHHHHHHHHHHHTTCC--------CTTCEEEECBTTTTBTT-----------
T ss_pred eEEEEEEcccCCCcc--ccH----HHHHHHHHHHHHHHHHcCCC--------cCCceEEEeecccCccc-----------
Confidence 67999999997311 122 35666677777776543211 10011222355443321
Q ss_pred hcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHH
Q 007929 224 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 303 (584)
Q Consensus 224 ~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~ 303 (584)
+ +.+ +. | +|+++
T Consensus 201 ----~--------------------------------e~~-------------------~~-~-~~~~g----------- 212 (435)
T 1jny_A 201 ----T--------------------------------HKS-------------------EN-M-KWYNG----------- 212 (435)
T ss_dssp ----T--------------------------------BCC-------------------SS-C-TTCCS-----------
T ss_pred ----c--------------------------------ccc-------------------cc-c-ccccc-----------
Confidence 0 000 00 0 11111
Q ss_pred HhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCc
Q 007929 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 383 (584)
Q Consensus 304 ~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~ 383 (584)
..||+++.. +|+|.. +.++|+.+.|..++..++.|+
T Consensus 213 ------------------~~Ll~~l~~-~~~p~~-------------------------~~~~~~~~~v~~v~~~~~~G~ 248 (435)
T 1jny_A 213 ------------------PTLEEYLDQ-LELPPK-------------------------PVDKPLRIPIQDVYSISGVGT 248 (435)
T ss_dssp ------------------CCHHHHHTT-CCCCCC-------------------------GGGSCCBEEEEEEEEETTTEE
T ss_pred ------------------hhHHHHHhc-cCCCCC-------------------------CCCCCeEEEEEEEEEeCCCcE
Confidence 235666544 455532 123566666666666678888
Q ss_pred eeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--c--cCcccccce-E
Q 007929 384 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--G--LDQYITKNA-T 458 (584)
Q Consensus 384 ~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--g--l~~~~~~tg-T 458 (584)
++++||+||+|++||.|++.+. +.+ .+|.+|.. ...++++|.|||+|++. | .++. ..| +
T Consensus 249 -v~~g~v~~G~l~~gd~v~~~p~----~~~-----~~V~~i~~----~~~~~~~a~aG~~v~~~l~g~~~~~i--~~Gd~ 312 (435)
T 1jny_A 249 -VPVGRVESGVLKVGDKIVFMPA----GKV-----GEVRSIET----HHTKMDKAEPGDNIGFNVRGVEKKDI--KRGDV 312 (435)
T ss_dssp -EEEEECCBSCEETTCEEEEETT----TEE-----EEEEEEEE----TTEEESEECTTCEEEEEEESSCGGGC--CTTCE
T ss_pred -EEEEEEecCeEEcCCEEEECCc----eeE-----EEEEEEEE----CCcEEeEEcCCCEEEEEEecCCHHHc--CCccE
Confidence 9999999999999999997643 233 58888864 24789999999999984 4 4454 678 8
Q ss_pred eccCC
Q 007929 459 LTNEK 463 (584)
Q Consensus 459 l~~~~ 463 (584)
|++++
T Consensus 313 l~~~~ 317 (435)
T 1jny_A 313 VGHPN 317 (435)
T ss_dssp EECTT
T ss_pred ecCCC
Confidence 98865
No 18
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.3e-30 Score=289.62 Aligned_cols=287 Identities=20% Similarity=0.259 Sum_probs=173.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCcccccc----------CC-----CeeeeCChhhHhhhccceecceEEEE
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRQDEAERGITIKSTGISLY 70 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~r~~Ti~~~~~~~~ 70 (584)
...++|++ +||+|+|||||+++|++.++.+.... .| ..+++|..++|+++|+|++.....+.
T Consensus 175 k~~~~I~i---iG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 175 KPVVHLVV---TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp CCEEEEEE---ECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred CCccEEEE---EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 35689999 99999999999999999988776441 11 25789999999999999999988888
Q ss_pred eecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCC
Q 007929 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERI 143 (584)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-------~~~t~~~l~~~~~~~~ 143 (584)
+. ++.++|||||||.+|...+..+++.+|++|+|||+.+|. ..||..++..+...++
T Consensus 252 ~~----------------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgi 315 (592)
T 3mca_A 252 SD----------------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGI 315 (592)
T ss_dssp -----------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSC
T ss_pred eC----------------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC
Confidence 77 789999999999999999999999999999999999864 8999999999888999
Q ss_pred c-eEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHH-hhccCCCCCcceecccCCccccccCCcceeeehhhHHHHh
Q 007929 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM-ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (584)
Q Consensus 144 p-~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l-~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y 221 (584)
| +|+|+||||+.. .+. ..+..+.++++..+ ..++ +.+....+...|+..|.+..-
T Consensus 316 p~iIvviNKiDl~~----~~~----~~~~~i~~el~~~l~~~~g--------~~~~~~~ii~iSA~~G~gI~e------- 372 (592)
T 3mca_A 316 SEIVVSVNKLDLMS----WSE----DRFQEIKNIVSDFLIKMVG--------FKTSNVHFVPISAISGTNLIQ------- 372 (592)
T ss_dssp CCEEEEEECGGGGT----TCH----HHHHHHHHHHHHHHTTTSC--------CCGGGEEEEEECSSSCSSSCS-------
T ss_pred CeEEEEEecccccc----ccH----HHHHHHHHHHHHHHHHhhC--------CCccceEEEEEecccCccccc-------
Confidence 8 778999999972 222 45666777777665 3221 111101233457766654210
Q ss_pred hhhcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHH
Q 007929 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (584)
Q Consensus 222 ~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e 301 (584)
+... . ..
T Consensus 373 ----------------------~~~~--------------~-----------------------~~-------------- 379 (592)
T 3mca_A 373 ----------------------KDSS--------------D-----------------------LY-------------- 379 (592)
T ss_dssp ----------------------CCCC--------------G-----------------------GG--------------
T ss_pred ----------------------cccc--------------c-----------------------cc--------------
Confidence 0000 0 00
Q ss_pred HHHhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCC
Q 007929 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (584)
Q Consensus 302 ~~~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~ 381 (584)
.|+- ...|++.|..++|++. +.++||.+.|..++.. ..
T Consensus 380 --------------~w~~-g~~Lle~l~~~~pp~~--------------------------~~~~p~r~~v~~v~~~-~~ 417 (592)
T 3mca_A 380 --------------KWYK-GPTLLSALDQLVPPEK--------------------------PYRKPLRLSIDDVYRS-PR 417 (592)
T ss_dssp --------------GTCC-SCCHHHHHHTSCCCSC--------------------------TTTSCCEEEEEEEEEE-TT
T ss_pred --------------cccc-hHHHHHHHHhhccccc--------------------------cccccchheeeEEEec-CC
Confidence 0110 0246777777777331 3468999999998877 66
Q ss_pred CceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccC-cccCCCEEEE--EccCcccccce-
Q 007929 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE-DVPCGNTVAM--VGLDQYITKNA- 457 (584)
Q Consensus 382 g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~-ea~AGdIvav--~gl~~~~~~tg- 457 (584)
|+ +..+||.+|+|++||.|.+++.+ .+ .+|.+|.. ...+++ +|.|||+|++ .|++..-.+.|
T Consensus 418 g~-v~~G~v~~G~l~~Gd~v~i~p~~----~~-----~~V~~i~~----~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~ 483 (592)
T 3mca_A 418 SV-TVTGRVEAGNVQVNQVLYDVSSQ----ED-----AYVKNVIR----NSDPSSTWAVAGDTVTLQLADIEVNQLRPGD 483 (592)
T ss_dssp EE-EEEEEEEESEEETTCEEEETTTT----EE-----EEEEEEEC----SSSCSCCEEETTCEEEEEESSSCGGGCCTTC
T ss_pred eE-EEEEEEeeeeEccCCEEEEccCC----ce-----EEEEEEEE----cCccCcceecCCCEEEEEEccccccccceEE
Confidence 76 88999999999999999987543 22 47777773 447899 9999999986 46654334677
Q ss_pred EeccCC
Q 007929 458 TLTNEK 463 (584)
Q Consensus 458 Tl~~~~ 463 (584)
+|++++
T Consensus 484 vl~~~~ 489 (592)
T 3mca_A 484 ILSNYE 489 (592)
T ss_dssp EEECSS
T ss_pred EeccCC
Confidence 888865
No 19
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.96 E-value=4.3e-29 Score=272.06 Aligned_cols=296 Identities=20% Similarity=0.261 Sum_probs=194.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCcccccc------------CC---CeeeeCChhhHhhhccceecceEEEEe
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV------------AG---DVRMTDTRQDEAERGITIKSTGISLYY 71 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~------------~g---~~~~~D~~~~E~~r~~Ti~~~~~~~~~ 71 (584)
..++|++ +||+|+|||||+++|++..+.+.... .+ ..+++|...+|+++|+|++.....+.+
T Consensus 32 ~~~ki~i---iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 108 (483)
T 3p26_A 32 PHLSFVV---LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 108 (483)
T ss_dssp CEEEEEE---ESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec
Confidence 5689999 99999999999999999988776431 11 246789999999999999999988887
Q ss_pred ecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCCc
Q 007929 72 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR 144 (584)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-------~~~~t~~~l~~~~~~~~p 144 (584)
. ++.++|||||||.+|...+..+++.+|++|+|||+.+| +..|+.+++..+...+++
T Consensus 109 ~----------------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~ 172 (483)
T 3p26_A 109 H----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH 172 (483)
T ss_dssp S----------------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCC
T ss_pred C----------------CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCC
Confidence 7 79999999999999999999999999999999999998 678999999888888866
Q ss_pred -eEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhh
Q 007929 145 -PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 223 (584)
Q Consensus 145 -~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~ 223 (584)
+++++||||+.. .+. ..++++.++++..+..++.. +....+...|+..|.+.
T Consensus 173 ~iIvviNK~Dl~~----~~~----~~~~~i~~~~~~~l~~~g~~--------~~~~~~i~iSA~~g~gi----------- 225 (483)
T 3p26_A 173 NLIIAMNKMDNVD----WSQ----QRFEEIKSKLLPYLVDIGFF--------EDNINWVPISGFSGEGV----------- 225 (483)
T ss_dssp CEEEEEECGGGGT----TCH----HHHHHHHHHHHHHHHHHTCC--------GGGEEEEECCSSSCTTS-----------
T ss_pred cEEEEEECcCccc----chH----HHHHHHHHHHHHHHHHcCCC--------cccceEEEEeeecCCCc-----------
Confidence 778999999973 222 35556666666655433211 10012333466655432
Q ss_pred hcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHH
Q 007929 224 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 303 (584)
Q Consensus 224 ~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~ 303 (584)
+. +... .....|.++
T Consensus 226 ----~e-----------------------------l~~~---------------------~~~~~wy~g----------- 240 (483)
T 3p26_A 226 ----YK-----------------------------IEYT---------------------DEVRQWYNG----------- 240 (483)
T ss_dssp ----SS-----------------------------SCCC---------------------HHHHHHCCS-----------
T ss_pred ----cc-----------------------------cCcc---------------------cccccccCC-----------
Confidence 00 0000 000011111
Q ss_pred HhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecC---C
Q 007929 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS---D 380 (584)
Q Consensus 304 ~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~---~ 380 (584)
|....+|+.+...+|.+... .+.++|+...|..++..+ .
T Consensus 241 ---------------~~L~~~L~~i~~~~~~~~p~-----------------------~~~~~p~r~~v~~v~~~~~~~g 282 (483)
T 3p26_A 241 ---------------PNLMSTLENAAFKISKENEG-----------------------INKDDPFLFSVLEIIPSKKTSN 282 (483)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHTT-----------------------CCSSSCCEEEEEEEEC---CCS
T ss_pred ---------------CCHHHHHHHHHhhccccccc-----------------------ccCCCceEEEEEEEEccCCcCC
Confidence 11234455555555541100 134688888888887654 3
Q ss_pred CCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEe----cCCccccCcccCCCEEEE----EccCcc
Q 007929 381 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAM----VGLDQY 452 (584)
Q Consensus 381 ~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~----g~~~~~v~ea~AGdIvav----~gl~~~ 452 (584)
.|+ +..+||.+|+|++||.|.+++.+ .+ .+|.+|.... |....++++|.|||+|++ .+.++.
T Consensus 283 ~g~-v~~G~v~~G~l~~gd~v~~~p~~----~~-----~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~di 352 (483)
T 3p26_A 283 DLA-LVSGKLESGSIQPGESLTIYPSE----QS-----CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDI 352 (483)
T ss_dssp CCE-EEEEEEEESEECTTCEEEEETTT----EE-----EEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCGGGC
T ss_pred Cce-EEEEEEecceEccCCEEEEeCCC----Ce-----EEEEEEEEcCccccccccccccEECCCCEEEEEEEecccccC
Confidence 567 99999999999999999987542 22 4788887542 455789999999999999 233454
Q ss_pred cccce-EeccCC
Q 007929 453 ITKNA-TLTNEK 463 (584)
Q Consensus 453 ~~~tg-Tl~~~~ 463 (584)
..| +|++++
T Consensus 353 --~rG~vl~~~~ 362 (483)
T 3p26_A 353 --QNGDLAASVD 362 (483)
T ss_dssp --CTTCEEECTT
T ss_pred --CceEEEEcCC
Confidence 667 888765
No 20
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.96 E-value=2.4e-29 Score=272.61 Aligned_cols=288 Identities=20% Similarity=0.303 Sum_probs=172.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccc----------cCC-----CeeeeCChhhHhhhccceecceEEEE
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAG-----DVRMTDTRQDEAERGITIKSTGISLY 70 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~----------~~g-----~~~~~D~~~~E~~r~~Ti~~~~~~~~ 70 (584)
...++|++ +||+|+|||||+++|++.+|.+... ..| ..+++|..++|+++|+|++.....+.
T Consensus 41 k~~~~i~i---iG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~ 117 (467)
T 1r5b_A 41 KEHVNIVF---IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE 117 (467)
T ss_dssp CEEEEEEE---EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE
T ss_pred CCeeEEEE---EECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe
Confidence 35679999 9999999999999999988877532 112 24678999999999999999988887
Q ss_pred eecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-------chhHHHHHHHHHhcCC
Q 007929 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERI 143 (584)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-------~~~t~~~l~~~~~~~~ 143 (584)
+. +++++|||||||.+|..++..+++.+|++|+|||+.+|+ +.||.+++..+...++
T Consensus 118 ~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~v 181 (467)
T 1r5b_A 118 TE----------------HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGI 181 (467)
T ss_dssp CS----------------SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred cC----------------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCC
Confidence 77 789999999999999999999999999999999999997 4799999999888899
Q ss_pred c-eEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhc-cCCCCCcceecccCCccccccCCcceeeehhhHHHHh
Q 007929 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY-EDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (584)
Q Consensus 144 p-~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~-~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y 221 (584)
| +++++||||+... ..+. ..++.+.++++..+..+ +..+...+. +...|+..|.+.
T Consensus 182 p~iivviNK~Dl~~~--~~~~----~~~~~i~~e~~~~l~~~~g~~~~~~~~-------~i~vSA~~g~~i--------- 239 (467)
T 1r5b_A 182 NHLVVVINKMDEPSV--QWSE----ERYKECVDKLSMFLRRVAGYNSKTDVK-------YMPVSAYTGQNV--------- 239 (467)
T ss_dssp SSEEEEEECTTSTTC--SSCH----HHHHHHHHHHHHHHHHHHCCCHHHHEE-------EEECBTTTTBTT---------
T ss_pred CEEEEEEECccCCCc--cccH----HHHHHHHHHHHHHHHHhcCCCccCCce-------EEeccccccccc---------
Confidence 8 7899999999631 1122 35566666666665432 100000111 222355554431
Q ss_pred hhhcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHH
Q 007929 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (584)
Q Consensus 222 ~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e 301 (584)
+. + ++...-
T Consensus 240 ------~~--l---------~~~~~~------------------------------------------------------ 248 (467)
T 1r5b_A 240 ------KD--R---------VDSSVC------------------------------------------------------ 248 (467)
T ss_dssp ------SS--C---------CCTTTC------------------------------------------------------
T ss_pred ------cc--c---------cccccC------------------------------------------------------
Confidence 00 0 000000
Q ss_pred HHHhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCC
Q 007929 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (584)
Q Consensus 302 ~~~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~ 381 (584)
.|+.. ..|++.+ +.+|.|.. +.++||.+.|...+. ..
T Consensus 249 --------------~w~~g-~~L~~~l-~~i~~~~~-------------------------~~~~p~~~~v~~~~~--~~ 285 (467)
T 1r5b_A 249 --------------PWYQG-PSLLEYL-DSMTHLER-------------------------KVNAPFIMPIASKYK--DL 285 (467)
T ss_dssp --------------SSCCS-CCHHHHH-HHCCCCHH-------------------------HHTSCCEEECCEEEE--SS
T ss_pred --------------ccccc-hhHHHHH-HhCCCCcC-------------------------CCCCCcEEEEEEEEe--CC
Confidence 01110 1234333 34676642 225788888888764 35
Q ss_pred CceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE--Ec-cCcccccce-
Q 007929 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VG-LDQYITKNA- 457 (584)
Q Consensus 382 g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav--~g-l~~~~~~tg- 457 (584)
|+ +.++||.+|+|++||.|.+++.+ .. .+|.+|+. ....++++|.|||+|++ .| .++. ..|
T Consensus 286 G~-v~~G~v~~G~l~~gd~v~~~p~~----~~-----~~V~~i~~---~~~~~~~~a~aG~~v~i~l~g~~~~i--~rG~ 350 (467)
T 1r5b_A 286 GT-ILEGKIEAGSIKKNSNVLVMPIN----QT-----LEVTAIYD---EADEEISSSICGDQVRLRVRGDDSDV--QTGY 350 (467)
T ss_dssp SE-EEEEECCBSEEETTEEEEEETTT----EE-----EEEEEEEC---TTCCEESEEETTCEEEEEEESCCTTC--CTTC
T ss_pred Ce-EEEEEEeeeEEeeCCEEEEccCC----ee-----EEEEEEec---cCCcEeeEEcCCCEEEEEEeccHhhC--CceE
Confidence 87 99999999999999999987542 22 46777763 22578999999999998 45 4443 667
Q ss_pred EeccCC
Q 007929 458 TLTNEK 463 (584)
Q Consensus 458 Tl~~~~ 463 (584)
+|++++
T Consensus 351 vl~~~~ 356 (467)
T 1r5b_A 351 VLTSTK 356 (467)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 888765
No 21
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.96 E-value=9.6e-29 Score=283.92 Aligned_cols=283 Identities=19% Similarity=0.284 Sum_probs=188.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +||+|+|||||+++|++......+......+.+|..++|+++|+|++...+.+.+.
T Consensus 295 ~~lnIvI---IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~-------------- 357 (1289)
T 3avx_A 295 PHVNVGT---IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP-------------- 357 (1289)
T ss_dssp CEEEEEE---EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS--------------
T ss_pred CeeEEEE---EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC--------------
Confidence 4688999 99999999999999986531100000001236788899999999999988777665
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEEEecCccccccccCCHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~ 165 (584)
++.++|||||||.+|...+..+++.+|++|+|||+.+|...||.++|..+...++| +|+++||||+.. +.
T Consensus 358 --~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-----d~-- 428 (1289)
T 3avx_A 358 --TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD-----DE-- 428 (1289)
T ss_dssp --SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-----CH--
T ss_pred --CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-----ch--
Confidence 78999999999999999999999999999999999999999999999988888999 579999999973 11
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcC
Q 007929 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~ 245 (584)
..++.+.++++..+..++. .+....+...|+..|+.
T Consensus 429 --e~le~i~eEi~elLk~~G~--------~~~~vp~IpvSAktG~n---------------------------------- 464 (1289)
T 3avx_A 429 --ELLELVEMEVRELLSQYDF--------PGDDTPIVRGSALKALE---------------------------------- 464 (1289)
T ss_dssp --HHHHHHHHHHHHHHHHTTS--------CTTTCCEEECCSTTTTT----------------------------------
T ss_pred --hhHHHHHHHHHHHHHhccc--------cccceeEEEEEeccCCC----------------------------------
Confidence 2344444555555543211 00001122334433210
Q ss_pred CCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchHHHH
Q 007929 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (584)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~~LL 325 (584)
.+. .|.++ +..|+
T Consensus 465 -----------------------------------g~~----~w~eG----------------------------I~eLl 477 (1289)
T 3avx_A 465 -----------------------------------GDA----EWEAK----------------------------ILELA 477 (1289)
T ss_dssp -----------------------------------CCH----HHHHH----------------------------HHHHH
T ss_pred -----------------------------------CCc----ccccc----------------------------chhhH
Confidence 000 01111 25688
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcC
Q 007929 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (584)
Q Consensus 326 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~ 405 (584)
+++.+++|.|.. +.++|+.+.|..++.+++.|+ ++++||++|+|++||.|.+.+
T Consensus 478 eaL~~~Ip~P~r-------------------------~~d~Pfr~pId~Vf~i~G~Gt-VvtGrV~sGtLkvGD~V~I~p 531 (1289)
T 3avx_A 478 GFLDSYIPEPER-------------------------AIDKPFLLPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIVG 531 (1289)
T ss_dssp HHHHHTSCCCCC-------------------------GGGSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEES
T ss_pred hHHhhhcCCCcc-------------------------ccccceeeeccccccccCCcE-EEEEEEeccEEecCCEEEEec
Confidence 889999998842 235789998888888888898 999999999999999999876
Q ss_pred CCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--ccCcccccce-EeccCC
Q 007929 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (584)
Q Consensus 406 ~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--gl~~~~~~tg-Tl~~~~ 463 (584)
.+. ..+ .+|.+|.. ...++++|.|||+|++. |++..-...| +|++++
T Consensus 532 s~~--~~~-----~kVksI~~----~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 532 IKE--TQK-----STCTGVEM----FRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp SSS--CEE-----EEEEEEEC----SSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred CCC--cee-----EEEEEEee----cCceeeEEecCCcceeEeeecchhcCCcccEEecCC
Confidence 431 012 47777753 34689999999999885 5533223677 888765
No 22
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.96 E-value=2.3e-28 Score=264.29 Aligned_cols=297 Identities=23% Similarity=0.324 Sum_probs=206.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccc------------cCC---CeeeeCChhhHhhhccceecceEEEE
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE------------VAG---DVRMTDTRQDEAERGITIKSTGISLY 70 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~------------~~g---~~~~~D~~~~E~~r~~Ti~~~~~~~~ 70 (584)
...++|++ +||+|+|||||+++|++..+.+... +.+ ..+++|..++|+++|+|++.....+.
T Consensus 5 ~~~~~i~i---iG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~ 81 (458)
T 1f60_A 5 KSHINVVV---IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (458)
T ss_dssp CEEEEEEE---EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE
T ss_pred CceeEEEE---EcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe
Confidence 35689999 9999999999999999987665432 122 12467889999999999999988887
Q ss_pred eecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCch-------hHHHHHHHHHhcCC
Q 007929 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-------QTETVLRQALGERI 143 (584)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~-------~t~~~l~~~~~~~~ 143 (584)
+. ++.++|||||||.+|...+..+++.+|++|+|||+.+|... ||.+++..+...++
T Consensus 82 ~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v 145 (458)
T 1f60_A 82 TP----------------KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV 145 (458)
T ss_dssp CS----------------SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTC
T ss_pred cC----------------CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCC
Confidence 76 78999999999999999999999999999999999998765 99999988888888
Q ss_pred c-eEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhh
Q 007929 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (584)
Q Consensus 144 p-~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~ 222 (584)
| +++++||||+.. .+. ..++++.++++..+..++. .|....+...|+..|.+.
T Consensus 146 ~~iivviNK~Dl~~----~~~----~~~~~i~~~~~~~l~~~g~--------~~~~~~~i~vSA~~g~nv---------- 199 (458)
T 1f60_A 146 RQLIVAVNKMDSVK----WDE----SRFQEIVKETSNFIKKVGY--------NPKTVPFVPISGWNGDNM---------- 199 (458)
T ss_dssp CEEEEEEECGGGGT----TCH----HHHHHHHHHHHHHHHHHTC--------CGGGCCEEECCTTTCBTT----------
T ss_pred CeEEEEEEcccccc----CCH----HHHHHHHHHHHHHHHHcCC--------CccCceEEEeecccCcCc----------
Confidence 7 778999999972 222 3456666666666543321 110012334466665532
Q ss_pred hhcCCChHhHHH-HhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHH
Q 007929 223 SKFGVDESKMME-RLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (584)
Q Consensus 223 ~~~~vd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e 301 (584)
+ .+.. .-| |. .|... .+. ..++
T Consensus 200 -----~--~~~~~~~~----~~----~~~~~------~~t---------------------------------g~~~--- 222 (458)
T 1f60_A 200 -----I--EATTNAPW----YK----GWEKE------TKA---------------------------------GVVK--- 222 (458)
T ss_dssp -----T--BCCSSCTT----CC----CEEEE------CSS---------------------------------SEEE---
T ss_pred -----c--cccccCch----hh----ccccc------ccc---------------------------------cccc---
Confidence 0 0000 001 00 01000 000 0000
Q ss_pred HHHhHHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCC
Q 007929 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (584)
Q Consensus 302 ~~~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~ 381 (584)
...|++++.. +|+|.. +.++|+...|..++..++.
T Consensus 223 -------------------~~~Ll~~l~~-~~~p~~-------------------------~~~~p~r~~i~~v~~~~g~ 257 (458)
T 1f60_A 223 -------------------GKTLLEAIDA-IEQPSR-------------------------PTDKPLRLPLQDVYKIGGI 257 (458)
T ss_dssp -------------------ESSHHHHHHT-SCCCCC-------------------------CTTSCCEEEEEEEEEETTT
T ss_pred -------------------hHHHHHHhhc-cCCCcc-------------------------cCCCCcEEEEEEEEEeCCC
Confidence 0235666443 455531 3467899999998888888
Q ss_pred CceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE--ccCcccccce-E
Q 007929 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-T 458 (584)
Q Consensus 382 g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~--gl~~~~~~tg-T 458 (584)
|+ +.++||.+|+|+.||+|.+++.+ .. .+|.+|.. ...++++|.|||+|++. |++..-.+.| +
T Consensus 258 G~-v~~G~v~~G~l~~gd~v~~~p~~----~~-----~~V~~i~~----~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~v 323 (458)
T 1f60_A 258 GT-VPVGRVETGVIKPGMVVTFAPAG----VT-----TEVKSVEM----HHEQLEQGVPGDNVGFNVKNVSVKEIRRGNV 323 (458)
T ss_dssp EE-EEEEECCBSCBCTTCEEEEETTT----EE-----EEEEEEEE----TTEECSCBCTTCEEEEEESSCCTTTSCTTCE
T ss_pred cE-EEEEEEeCCeEcCCCEEEECCCC----ce-----EEEeEEEE----CCeEEEEEcCCCEEEEEEcCCcccccCceeE
Confidence 98 99999999999999999987642 22 46777763 23689999999998885 5532213567 8
Q ss_pred eccCC
Q 007929 459 LTNEK 463 (584)
Q Consensus 459 l~~~~ 463 (584)
|++++
T Consensus 324 l~~~~ 328 (458)
T 1f60_A 324 CGDAK 328 (458)
T ss_dssp EEETT
T ss_pred EecCC
Confidence 88764
No 23
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.96 E-value=1.6e-28 Score=258.01 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=103.1
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +||+|+|||||+++|+ +||+|++.....+.+. +
T Consensus 23 ~i~i---iG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~----------------~ 59 (370)
T 2elf_A 23 NVAI---IGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKE----------------G 59 (370)
T ss_dssp EEEE---EESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSS----------------S
T ss_pred EEEE---ECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecC----------------C
Confidence 7888 9999999999999994 5789999888887776 7
Q ss_pred eeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEe-cCccccccccCCHHHHH
Q 007929 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVN-KMDRCFLELQVDGEEAY 167 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviN-K~D~~~~~~~~~~~~~~ 167 (584)
++++|||||||.+|..++..+++.+|+||+||| .+|...||.++|..+...++|. ++++| |||+ . .
T Consensus 60 ~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~------~---- 127 (370)
T 2elf_A 60 RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-H------M---- 127 (370)
T ss_dssp SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C------H----
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C------H----
Confidence 889999999999999999999999999999999 9999999999999988889998 89999 9999 4 1
Q ss_pred HHHHHHHHHHHHHHh
Q 007929 168 QTFQKVIENANVIMA 182 (584)
Q Consensus 168 ~~~~~~l~~v~~~l~ 182 (584)
..++++.++++..+.
T Consensus 128 ~~~~~~~~~i~~~l~ 142 (370)
T 2elf_A 128 HAIDELKAKLKVITS 142 (370)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 234555666666653
No 24
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.96 E-value=1.3e-27 Score=255.39 Aligned_cols=135 Identities=25% Similarity=0.247 Sum_probs=102.4
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhh---hhccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAA---LKSYR 82 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~---~~~~~ 82 (584)
...++|++ +||+|||||||+++|+. ...|..++|+++|+|++.....+.+...... .....
T Consensus 8 ~~~~~I~i---iG~~~~GKSTLi~~L~g-------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~ 71 (410)
T 1kk1_A 8 QAEVNIGM---VGHVDHGKTTLTKALTG-------------VWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 71 (410)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHT-------------CCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSB
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhC-------------CccccChhhhcCCcEEEEeeeeeeccccccccccccccc
Confidence 45688999 99999999999999952 2456778899999999988776665310000 00000
Q ss_pred ccCCC----CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCCc-eEEEEecCcccc
Q 007929 83 GERQG----NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKMDRCF 156 (584)
Q Consensus 83 ~~~~~----~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-~~~t~~~l~~~~~~~~p-~ivviNK~D~~~ 156 (584)
....+ ....++|||||||.+|..++.++++.+|++|+|||+.+|. +.||.+++..+...+++ +++++||||+..
T Consensus 72 ~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 72 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp CTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred ccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 00001 1278999999999999999999999999999999999998 99999999887766764 668899999974
No 25
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.96 E-value=8.3e-28 Score=258.58 Aligned_cols=285 Identities=20% Similarity=0.196 Sum_probs=190.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCcccccc----------CCC-------eeeeCChhhHhhhccceecceEEE
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRQDEAERGITIKSTGISL 69 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-------~~~~D~~~~E~~r~~Ti~~~~~~~ 69 (584)
..++|++ +||+|+|||||+++|++..+.+.... .|. .+.+|..++|++||+|++.+...+
T Consensus 23 ~~~~i~i---iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 23 EMLRFLT---CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp EEEEEEE---ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred CceEEEE---EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 4589999 99999999999999999887654321 111 135788899999999999988877
Q ss_pred EeecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCc-eEEE
Q 007929 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLT 148 (584)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p-~ivv 148 (584)
.+. +.+++|||||||.+|...+..+++.+|++|+|||+.+|...||.+++..+...++| ++++
T Consensus 100 ~~~----------------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvv 163 (434)
T 1zun_B 100 STA----------------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVA 163 (434)
T ss_dssp ECS----------------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred ecC----------------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEE
Confidence 776 78999999999999999999999999999999999999999999999888778886 6789
Q ss_pred EecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCC
Q 007929 149 VNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVD 228 (584)
Q Consensus 149 iNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd 228 (584)
+||+|+.. .++ ..++++.++++..+..++.. .... .+...|+..|.+. +
T Consensus 164 iNK~Dl~~----~~~----~~~~~i~~~~~~~~~~~g~~-~~~~-------~~i~vSA~~g~gi---------------~ 212 (434)
T 1zun_B 164 INKMDLNG----FDE----RVFESIKADYLKFAEGIAFK-PTTM-------AFVPMSALKGDNV---------------V 212 (434)
T ss_dssp EECTTTTT----SCH----HHHHHHHHHHHHHHHTTTCC-CSEE-------EEEECCTTTCTTT---------------S
T ss_pred EEcCcCCc----ccH----HHHHHHHHHHHHHHHHhCCC-ccCc-------eEEEEeccCCCCc---------------c
Confidence 99999973 222 34555556666555433200 0011 1223355554421 0
Q ss_pred hHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHH
Q 007929 229 ESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKA 308 (584)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~ 308 (584)
..|.. .+ |.++
T Consensus 213 --------------------------------~~~~~---~~------------------w~~g---------------- 223 (434)
T 1zun_B 213 --------------------------------NKSER---SP------------------WYAG---------------- 223 (434)
T ss_dssp --------------------------------SCCTT---CT------------------TCCS----------------
T ss_pred --------------------------------ccccc---Cc------------------cccC----------------
Confidence 00000 00 0000
Q ss_pred HHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEE
Q 007929 309 LMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFG 388 (584)
Q Consensus 309 l~~~v~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~ 388 (584)
..|++ +.+.+|.|.. +.++|+.+.|..++...+.|+ ...+
T Consensus 224 -------------~~L~~-~l~~i~~~~~-------------------------~~~~~~~~~v~~v~~~~~~~~-g~~G 263 (434)
T 1zun_B 224 -------------QSLME-ILETVEIASD-------------------------RNYTDLRFPVQYVNRPNLNFR-GFAG 263 (434)
T ss_dssp -------------CCTTH-HHHHSCCTTC-------------------------CCSSSCEEECCEEECSSSSCC-EEEE
T ss_pred -------------chHHH-HHhcCCCccc-------------------------CCCCCcEEEEEEEeccCCCce-EEEE
Confidence 00112 1223455531 235788887776665445566 6789
Q ss_pred EeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCC
Q 007929 389 RVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 389 RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~ 463 (584)
||.+|+|++||.|.+++.+ .. .+|.+|.... .++++|.|||+|++...+..-...| +|++++
T Consensus 264 ~v~~G~l~~gd~v~~~p~~----~~-----~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~ 326 (434)
T 1zun_B 264 TLASGIVHKGDEIVVLPSG----KS-----SRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLVHAD 326 (434)
T ss_dssp ECCBSCEETTCEEEETTTC----CE-----EEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEEETT
T ss_pred EEecceEeCCCEEEEecCC----eE-----EEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEECCC
Confidence 9999999999999987532 22 4788887543 4799999999999976543223567 888765
No 26
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-28 Score=272.77 Aligned_cols=295 Identities=20% Similarity=0.280 Sum_probs=206.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccc------------cCC---CeeeeCChhhHhhhccceecceEEEE
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE------------VAG---DVRMTDTRQDEAERGITIKSTGISLY 70 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~------------~~g---~~~~~D~~~~E~~r~~Ti~~~~~~~~ 70 (584)
...++|++ +||+|+|||||+++|++..+.+... +.+ ..+++|..++|+++|+|++.....+.
T Consensus 165 k~~lkV~i---vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~ 241 (611)
T 3izq_1 165 LPHLSFVV---LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS 241 (611)
T ss_dssp CCCCEEEE---ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE
T ss_pred CCceEEEE---EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe
Confidence 35689999 9999999999999999888876643 111 24678899999999999999998888
Q ss_pred eecchhhhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCC-------CchhHHHHHHHHHhcCC
Q 007929 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (584)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g-------~~~~t~~~l~~~~~~~~ 143 (584)
+. ++.++|||||||.+|...+..+++.+|++|+|||+..| ...||..++..+...++
T Consensus 242 ~~----------------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi 305 (611)
T 3izq_1 242 TH----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI 305 (611)
T ss_dssp CS----------------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTC
T ss_pred cC----------------CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCC
Confidence 77 78999999999999999999999999999999999987 57899999998888887
Q ss_pred c-eEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhh
Q 007929 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (584)
Q Consensus 144 p-~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~ 222 (584)
| +|+|+||||+.. .+. ..++++.+++...+..++.. +....+...|+..|.+.
T Consensus 306 ~~iIVVvNKiDl~~----~~~----~~~~ei~~~l~~~l~~~g~~--------~~~~~~i~vSA~tG~gI---------- 359 (611)
T 3izq_1 306 HNLIIAMNKMDNVD----WSQ----QRFEEIKSKLLPYLVDIGFF--------EDNINWVPISGFSGEGV---------- 359 (611)
T ss_dssp CEEEEEEECTTTTT----TCH----HHHHHHHHHHHHHHHHHTCC--------GGGCEEEECCTTTCTTT----------
T ss_pred CeEEEEEecccccc----hhH----HHHHHHHHHHHHHHHhhccc--------ccCccEEeeecccCCCc----------
Confidence 7 678999999973 122 35556666666655433211 11012333466655432
Q ss_pred hhcCCChHhHHHHhhcCcccCcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHH
Q 007929 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (584)
Q Consensus 223 ~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~ 302 (584)
+. +... ...-.|- .+
T Consensus 360 -----~e--l~~~--------~~~~~Wy----------------------------------------~g---------- 374 (611)
T 3izq_1 360 -----YK--IEYT--------DEVRQWY----------------------------------------NG---------- 374 (611)
T ss_dssp -----SS--CTTS--------CTTCCSC----------------------------------------CS----------
T ss_pred -----cc--cCcc--------ccccccc----------------------------------------cC----------
Confidence 00 0000 0000010 00
Q ss_pred HHhHHHHHHHHHHhhccchHHHHHHHHhcCCC--hhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecC-
Q 007929 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPS--PATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS- 379 (584)
Q Consensus 303 ~~~~~~l~~~v~~~~~P~~~~LLd~i~~~lPs--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~- 379 (584)
|....+|+.+...+|. |. .+.++|+...|..++..+
T Consensus 375 ----------------~~L~~~L~~l~~~~p~~~p~-------------------------~~~~~p~r~~V~~v~~~~~ 413 (611)
T 3izq_1 375 ----------------PNLMSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEIIPSKK 413 (611)
T ss_dssp ----------------CCHHHHHTTSCCCCCCSSSC-------------------------CSCCSCCEEECCEEECCSS
T ss_pred ----------------CcHHHHHHHHhhcccccCcc-------------------------cccccchhhheeeeeccCc
Confidence 0112334444444443 21 134688888888877655
Q ss_pred --CCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEE----ecCCccccCcccCCCEEEE--Ecc--
Q 007929 380 --DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIW----MGKKQETVEDVPCGNTVAM--VGL-- 449 (584)
Q Consensus 380 --~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~----~g~~~~~v~ea~AGdIvav--~gl-- 449 (584)
..|+ +..|||.+|+|++||.|.+++.+ .+ .+|.+|... +|....++++|.|||+|++ .++
T Consensus 414 ~~g~g~-v~~G~V~~G~lk~Gd~v~~~p~~----~~-----~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~ 483 (611)
T 3izq_1 414 TSNDLA-LVSGKLESGSIQPGESLTIYPSE----QS-----CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 483 (611)
T ss_dssp SCSSSS-EEEEEEEESEECTTCEEEETTTT----EE-----EEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCT
T ss_pred cCCCee-EEEEEEEeceeccCCEEEEecCC----ce-----EEEEEEEEcccccccccccccceecCCCcceEEeeeccH
Confidence 3577 99999999999999999987543 22 478887755 2556789999999999999 233
Q ss_pred Ccccccce-EeccCC
Q 007929 450 DQYITKNA-TLTNEK 463 (584)
Q Consensus 450 ~~~~~~tg-Tl~~~~ 463 (584)
++. ..| +|++++
T Consensus 484 ~di--~rGdvl~~~~ 496 (611)
T 3izq_1 484 EDI--QNGDLAASVD 496 (611)
T ss_dssp TSC--CTTCEEBCST
T ss_pred hhC--cceEEccCCC
Confidence 444 667 888865
No 27
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.94 E-value=1.8e-27 Score=258.67 Aligned_cols=139 Identities=29% Similarity=0.344 Sum_probs=103.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +||+|+|||||+++|+.... ...+|..++|+++|+|++.....+.+.
T Consensus 17 m~~~~I~i---iG~~d~GKSTLi~~L~~~~~---------~~~~d~~~~e~~~GiTi~~~~~~~~~~------------- 71 (482)
T 1wb1_A 17 FKNINLGI---FGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLE------------- 71 (482)
T ss_dssp CEEEEEEE---EECTTSSHHHHHHHHHTTC-----------------------------CCCEEEET-------------
T ss_pred CCCCEEEE---ECCCCChHHHHHHHHHCCCc---------ccccccccccccCccEEecceEEEEEC-------------
Confidence 46789999 99999999999999964321 246788899999999999988888776
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHH
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~ 165 (584)
++.++|||||||.+|...+..+++.+|++|+|||+.+|++.||.+++..+...++|.++++||+|+.. .
T Consensus 72 ---~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~------~-- 140 (482)
T 1wb1_A 72 ---NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG------T-- 140 (482)
T ss_dssp ---TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC------H--
T ss_pred ---CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc------c--
Confidence 78999999999999999999999999999999999999999999999998888999999999999973 1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007929 166 AYQTFQKVIENANVIMA 182 (584)
Q Consensus 166 ~~~~~~~~l~~v~~~l~ 182 (584)
..++.+.++++..+.
T Consensus 141 --~~~~~~~~~l~~~l~ 155 (482)
T 1wb1_A 141 --EEIKRTEMIMKSILQ 155 (482)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHh
Confidence 345555666666553
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.94 E-value=4.1e-26 Score=243.45 Aligned_cols=133 Identities=23% Similarity=0.268 Sum_probs=96.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc--
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE-- 84 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~-- 84 (584)
..++|++ +||+|||||||+++|.. ...|...+|+++|+|++.....+.+..... .......
T Consensus 7 ~~~~I~i---iG~~d~GKSTLi~~L~g-------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~-~~~y~~~~~ 69 (408)
T 1s0u_A 7 AEVNIGM---VGHVDHGKTSLTKALTG-------------VWTDRHSEELRRGISIRLGYADCEIRKCPQ-CGTYTTKPR 69 (408)
T ss_dssp CCEEEEE---ESCTTSSHHHHHHHHHS-------------CCCCC-------CCCCCCEEEEEEEEECTT-TCCEESSSB
T ss_pred CceEEEE---EcCCCCCHHHHHHHHhC-------------CccccCcccccCCcEEEecccccccccccc-ccccccccc
Confidence 4689999 99999999999999952 245677889999999988766554421000 0000000
Q ss_pred CC--C----CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCC-ceEEEEecCcccc
Q 007929 85 RQ--G----NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~--~----~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-~~~t~~~l~~~~~~~~-p~ivviNK~D~~~ 156 (584)
.. + ..+.++|||||||.+|..++.++++.+|++|+|||+.+|. +.||.+++..+...++ |+++++||+|+..
T Consensus 70 ~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 70 CPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp CTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSC
T ss_pred ccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCC
Confidence 00 1 1278999999999999999999999999999999999998 8999999888766676 5679999999974
No 29
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.93 E-value=2e-25 Score=237.77 Aligned_cols=136 Identities=17% Similarity=0.136 Sum_probs=94.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +||+|+|||||+++|+............ .+.......+..++++.......+.+. ..
T Consensus 6 ~~~~~I~v---vG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 70 (403)
T 3sjy_A 6 QPEVNIGV---VGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSD-----------DE 70 (403)
T ss_dssp CCCCEEEE---ECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCC-----------SC
T ss_pred CCCcEEEE---ECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceeccccccccccc-----------cc
Confidence 45689999 9999999999999996532211100011 111111222334444443322111111 00
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-chhHHHHHHHHHhcCC-ceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-~~~t~~~l~~~~~~~~-p~ivviNK~D~~~ 156 (584)
......++|||||||.+|...+..+++.+|++|+|+|+.+|. ..||.+++..+...+. |+++++||+|+..
T Consensus 71 ~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 71 PKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS 143 (403)
T ss_dssp CEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred ccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc
Confidence 111378999999999999999999999999999999999998 9999999988777676 6789999999974
No 30
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.93 E-value=1.1e-27 Score=259.11 Aligned_cols=302 Identities=19% Similarity=0.203 Sum_probs=202.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+..+|++ +||+|||||||+++|+...-. ....+|+|++....++.+.
T Consensus 3 R~~~V~I---vGhvd~GKTTLl~~L~~~~v~----------------~~e~~GIT~~i~~~~v~~~-------------- 49 (501)
T 1zo1_I 3 RAPVVTI---MGHVDHGKTSLLEYIRSTKVA----------------SGEAGGITQHIGAYHVETE-------------- 49 (501)
T ss_dssp CCCCEEE---EESTTSSSHHHHHHHHHHHHS----------------BTTBCCCCCCSSCCCCCTT--------------
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHcCCCc----------------cccCCCeeEeEEEEEEEEC--------------
Confidence 5678899 999999999999999753210 1113678888777666555
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~ 166 (584)
++.++|||||||.+|...+.++++.+|++|+|||+.+|+.+||.++|..+...++|+++++||+|+...+ ++
T Consensus 50 --~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~----~~-- 121 (501)
T 1zo1_I 50 --NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEAD----PD-- 121 (501)
T ss_dssp --SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTC----CC--
T ss_pred --CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccC----HH--
Confidence 6789999999999999999999999999999999999999999999999888999999999999997311 10
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceecccC----CccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCccc
Q 007929 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEK----GTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 242 (584)
Q Consensus 167 ~~~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~----~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~ 242 (584)
.+...+. ...+.|.. ..+...|+..|.+
T Consensus 122 ---------~v~~~l~--------~~~~~~~~~~~~~~~v~vSAktG~g------------------------------- 153 (501)
T 1zo1_I 122 ---------RVKNELS--------QYGILPEEWGGESQFVHVSAKAGTG------------------------------- 153 (501)
T ss_dssp ---------CTTCCCC--------CCCCCTTCCSSSCEEEECCTTTCTT-------------------------------
T ss_pred ---------HHHHHHH--------HhhhhHHHhCCCccEEEEeeeeccC-------------------------------
Confidence 0000000 00000000 0011112221110
Q ss_pred CcCCCeeeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHHhhccchH
Q 007929 243 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASS 322 (584)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~~~~P~~~ 322 (584)
+.
T Consensus 154 ------------------------------------------------------------------------------I~ 155 (501)
T 1zo1_I 154 ------------------------------------------------------------------------------ID 155 (501)
T ss_dssp ------------------------------------------------------------------------------CT
T ss_pred ------------------------------------------------------------------------------cc
Confidence 01
Q ss_pred HHHHHHHhcCCChhhhhhhhhccccCCCCchhhcccccccCCCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEE
Q 007929 323 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVR 402 (584)
Q Consensus 323 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~ 402 (584)
.|++.+......+. ...+++.|+.++|++.+.+++.|. ++++||++|+|++||.|.
T Consensus 156 eLle~I~~~~~~~~-----------------------~~~~~~~~~~~~V~e~~~d~g~G~-v~~~~V~~Gtlk~Gd~v~ 211 (501)
T 1zo1_I 156 ELLDAILLQAEVLE-----------------------LKAVRKGMASGAVIESFLDKGRGP-VATVLVREGTLHKGDIVL 211 (501)
T ss_dssp THHHHTTTTCCCST-----------------------TTSCCCSBCEEEEEEEEECSSSSE-EEEEEEEESBCCTTCEEE
T ss_pred hhhhhhhhhhhhhc-----------------------cccccccccccceEEEEEeCCcEE-EEEEEEEeeEEecCCEEE
Confidence 22333322110000 012456788999999999999898 999999999999999998
Q ss_pred EcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEEccCcccccce-EeccCCC-CCcc------------
Q 007929 403 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKE-VDAH------------ 468 (584)
Q Consensus 403 v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~gl~~~~~~tg-Tl~~~~~-~~~~------------ 468 (584)
+.+ .. .+|..|. +..-.++++|.||+.|.+.|+++. ...| +++...+ ..+.
T Consensus 212 ~g~------~~-----~kVr~i~---~~~g~~v~~a~~g~~V~i~gl~~~-~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~ 276 (501)
T 1zo1_I 212 CGF------EY-----GRVRAMR---NELGQEVLEAGPSIPVEILGLSGV-PAAGDEVTVVRDEKKAREVALYRQGKFRE 276 (501)
T ss_dssp EEB------SS-----CEEEEEC---CTTTTSEEEECCSSCSSSEEECSC-CCTTEEEEEECSSCTTBCSSCBTTCCCCS
T ss_pred Ecc------ce-----eEEEEEE---ecCCCcCcEeccCCcEEEeCCCCC-CCCCCEEEecCCHHHHHHHHHHHHHHHHH
Confidence 531 11 2454444 444467999999999999998874 2455 4432110 0000
Q ss_pred ---------cccc----cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhhCCceEEEE
Q 007929 469 ---------PIRA----MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM 514 (584)
Q Consensus 469 ---------~~~~----~~~~~~Pv~~~aiep~~~~d~~kl~~aL~~L~~eDPsl~v~~ 514 (584)
.+.. +.....+.+.+.|.+...+..+.|.++|.+|..+++.+.+-.
T Consensus 277 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~~ 335 (501)
T 1zo1_I 277 VKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIG 335 (501)
T ss_dssp HHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCCC
T ss_pred HHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEEEE
Confidence 1111 111124568888999999999999999999998888877653
No 31
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.92 E-value=1.4e-26 Score=252.46 Aligned_cols=116 Identities=27% Similarity=0.324 Sum_probs=96.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+..+|++ +||+|||||||+++|....-. .+..+++|.+.....+.+.
T Consensus 3 r~pkV~I---vG~~~vGKTSLl~~L~~~~~~----------------~~~~~giT~~i~~~~v~~~-------------- 49 (537)
T 3izy_P 3 RSPVVTI---MGHVDHGKTTLLDKLRKTQVA----------------AMEAGGITQHIGAFLVSLP-------------- 49 (537)
T ss_dssp CCCBCEE---EESTTTTHHHHHHHHHHHHHH----------------HSSSCCBCCCTTSCCBCSS--------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCcc----------------cccCCceeEEEeEEEEEeC--------------
Confidence 4567888 999999999999999654321 1123467777665555442
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
.+..++|||||||.+|...+.++++.+|++|+|+|+.+|..+||.++|..+...++|+++++||+|+..
T Consensus 50 -~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 50 -SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp -CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred -CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 156899999999999999999999999999999999999999999999999999999999999999974
No 32
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=99.82 E-value=1.7e-20 Score=189.75 Aligned_cols=107 Identities=21% Similarity=0.402 Sum_probs=77.1
Q ss_pred EEEccCcccccce-EeccCCCCCcccccccccCCCceEEEEEEeCCC----CC-----hhHHHHHHHHHHhhCCceEEEE
Q 007929 445 AMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVA----SD-----LPKLVEGLKRLAKSDPMVVCSM 514 (584)
Q Consensus 445 av~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aiep~~~----~d-----~~kl~~aL~~L~~eDPsl~v~~ 514 (584)
|++||+++ ++| |||+.. .+.+++++.++ +|+++++|+|.+. +| ..||.++|++|+++||+|+|+.
T Consensus 2 av~Gl~~~--~iGDTl~~~~--~p~~L~~~~~~-ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~ 76 (332)
T 3e3x_A 2 NATGLGEL--KISDTICAQN--AVEALPALSVD-EPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQ 76 (332)
T ss_dssp -------------------------------CC-CCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CccCCCCC--ccCCEEcCCC--CcccCCCCCCC-CCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEE
Confidence 57889886 788 999987 67788888887 8999999999987 55 6799999999999999999999
Q ss_pred c-CCCcEEEEecChhhHHHHHHHHHHhhCCCceEEEcCcEEeeEee
Q 007929 515 E-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559 (584)
Q Consensus 515 ~-etge~il~g~GelHLe~~l~rL~~~f~~~v~v~~~~p~V~yrET 559 (584)
+ +++|++|+|||||||+|+++||+++ |+++.+++|+|+||||
T Consensus 77 ~~~t~~~~v~G~GELHLeIl~ErLrrE---g~ev~v~~P~V~YrEt 119 (332)
T 3e3x_A 77 TDDPDKFRVSGRGELHLSILIENMRRE---GFELAVSRPEVIIXEE 119 (332)
T ss_dssp CSSTTEEEEEESSHHHHHHHHHHHHHH---TBCEEECCCEECCEEE
T ss_pred cCCCCeEEEEeeCHHHHHHHHHHHHhc---CceEEEeCCEEEEEEE
Confidence 6 8999999999999999999999999 6999999999999998
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.64 E-value=8.8e-16 Score=156.65 Aligned_cols=117 Identities=24% Similarity=0.162 Sum_probs=90.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+..+|++ +|++|+|||||+++|++....+.....+ .|.......+.+.
T Consensus 5 ~~~g~V~i---vG~~nvGKSTLln~l~g~~~~ivs~~~~---------------tTr~~i~~i~~~~------------- 53 (301)
T 1wf3_A 5 TYSGFVAI---VGKPNVGKSTLLNNLLGVKVAPISPRPQ---------------TTRKRLRGILTEG------------- 53 (301)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHTSCCSCCCSSSC---------------CCCSCEEEEEEET-------------
T ss_pred ccCCEEEE---ECCCCCCHHHHHHHHhCCceeeecCCCC---------------ceeEEEEEEEEeC-------------
Confidence 34567999 9999999999999998765443322222 2222222223344
Q ss_pred CCCceeEEEeCCCCCCC--------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~d--------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~--~~p~ivviNK~D~~ 155 (584)
+.+++||||||+.+ |...+..+++.+|++++|+|++++....+..++.++.+. ++|+++|+||+|+.
T Consensus 54 ---~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 54 ---RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp ---TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred ---CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 78999999999987 677788899999999999999999888888777776665 89999999999997
Q ss_pred c
Q 007929 156 F 156 (584)
Q Consensus 156 ~ 156 (584)
.
T Consensus 131 ~ 131 (301)
T 1wf3_A 131 K 131 (301)
T ss_dssp S
T ss_pred C
Confidence 3
No 34
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.63 E-value=2.1e-15 Score=154.01 Aligned_cols=115 Identities=20% Similarity=0.164 Sum_probs=86.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+...|+| +||+|+|||||+++|++....+..... +.|.......+.+.
T Consensus 6 ~r~~~VaI---vG~~nvGKSTLln~L~g~~~~i~s~~~---------------~tTr~~~~gi~~~~------------- 54 (301)
T 1ega_A 6 SYCGFIAI---VGRPNVGKSTLLNKLLGQKISITSRKA---------------QTTRHRIVGIHTEG------------- 54 (301)
T ss_dssp CEEEEEEE---ECSSSSSHHHHHHHHHTCSEEECCCCS---------------SCCSSCEEEEEEET-------------
T ss_pred ccCCEEEE---ECCCCCCHHHHHHHHHCCCccccCCCC---------------CcceeeEEEEEEEC-------------
Confidence 34567889 999999999999999865432222111 12222222223444
Q ss_pred CCCceeEEEeCCCCCC---------CchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHV---------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~---------df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..++++||||+. +|...+..+++.+|++++|+|+.. +..++..+++.+...+.|.++++||+|+.
T Consensus 55 ---~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 55 ---AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp ---TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTC
T ss_pred ---CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccC
Confidence 7899999999997 344445677889999999999988 88999988888777789999999999997
No 35
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=1.3e-15 Score=163.53 Aligned_cols=116 Identities=23% Similarity=0.299 Sum_probs=88.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+.....+... ..|+|.+.....+.+.
T Consensus 174 ~~~ki~l---vG~~nvGKSSLin~l~~~~~~~~~~---------------~~gtT~d~~~~~~~~~-------------- 221 (436)
T 2hjg_A 174 EVIQFCL---IGRPNVGKSSLVNAMLGEERVIVSN---------------VAGTTRDAVDTSFTYN-------------- 221 (436)
T ss_dssp TCEEEEE---ECSTTSSHHHHHHHHHTSTTEEEC------------------------CCEEEEET--------------
T ss_pred cCcEEEE---EcCCCCCHHHHHHHHhCCCceeecC---------------CCCceeeeeEEEEEEC--------------
Confidence 4589999 9999999999999998654432221 2356777766677776
Q ss_pred CCceeEEEeCCCCCCCchH----------H-HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSS----------E-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~----------e-~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..++||||||+.++.. . ...+++.+|++|+|+|+++|...++..++..+...++|+++|+||+|+.
T Consensus 222 --~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 222 --QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299 (436)
T ss_dssp --TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred --CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 77899999999954332 2 3468889999999999999999999988888888899999999999997
Q ss_pred c
Q 007929 156 F 156 (584)
Q Consensus 156 ~ 156 (584)
.
T Consensus 300 ~ 300 (436)
T 2hjg_A 300 D 300 (436)
T ss_dssp C
T ss_pred C
Confidence 3
No 36
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.61 E-value=9.4e-16 Score=142.83 Aligned_cols=119 Identities=24% Similarity=0.306 Sum_probs=93.7
Q ss_pred ccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccc
Q 007929 3 SYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (584)
Q Consensus 3 ~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~ 82 (584)
+...+.++|++ +|+.|+|||||+++|+...-.. . ...++|.+.....+.+.
T Consensus 3 ~~~~~~~~i~v---~G~~~~GKssl~~~l~~~~~~~--~--------------~~~~~~~~~~~~~~~~~---------- 53 (178)
T 2lkc_A 3 HMVERPPVVTI---MGHVDHGKTTLLDAIRHSKVTE--Q--------------EAGGITQHIGAYQVTVN---------- 53 (178)
T ss_dssp TTCCCCCEEEE---ESCTTTTHHHHHHHHHTTCSSC--S--------------SCCSSSTTCCCCEEEET----------
T ss_pred CcCCCCCEEEE---ECCCCCCHHHHHHHHhCCcccc--C--------------CCCceeEeeeEEEEEeC----------
Confidence 44567889999 9999999999999996432110 0 01123444444445555
Q ss_pred ccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 83 ~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+.+|.......++.+|++++|+|+.++...++...+..+...++|+++|+||+|+..
T Consensus 54 ------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 54 ------DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp ------TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred ------CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 68899999999999988888888999999999999999888888888887777899999999999973
No 37
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.58 E-value=1.1e-14 Score=148.98 Aligned_cols=116 Identities=23% Similarity=0.214 Sum_probs=88.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..-.|+| +|++|+|||||+++|+...-.+..... +.|.......+.+.
T Consensus 9 ~~g~v~i---vG~~nvGKSTLin~l~g~~~~i~s~~~---------------~tT~~~~~~~~~~~-------------- 56 (308)
T 3iev_A 9 KVGYVAI---VGKPNVGKSTLLNNLLGTKVSIISPKA---------------GTTRMRVLGVKNIP-------------- 56 (308)
T ss_dssp EEEEEEE---ECSTTSSHHHHHHHHHTSCCSCCCSSS---------------CCCCSCEEEEEEET--------------
T ss_pred CCCEEEE---ECCCCCcHHHHHHHHhCCCccccCCCC---------------CceeeEEEEEEecC--------------
Confidence 4557888 999999999999999865443332222 23433333233222
Q ss_pred CCceeEEEeCCCCCCCch----------HHHHHHhhhcCeEEEEEeCCCCCchhHHHH-HHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFS----------SEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~----------~e~~~~l~~~D~ailvvda~~g~~~~t~~~-l~~~~~~~~p~ivviNK~D~~ 155 (584)
.++.++||||||+.++. ..+..+++.+|++++|+|+.++...++..+ +..+...++|+++|+||+|+.
T Consensus 57 -~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 57 -NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp -TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred -CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 16889999999997755 667788999999999999999999999988 555556689999999999996
No 38
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.57 E-value=7.3e-15 Score=158.67 Aligned_cols=116 Identities=25% Similarity=0.344 Sum_probs=90.8
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+.....+.... .|+|.+.....+.+.
T Consensus 194 ~~~ki~i---vG~~~vGKSslin~l~~~~~~~~~~~---------------~gtt~~~~~~~~~~~-------------- 241 (456)
T 4dcu_A 194 EVIQFCL---IGRPNVGKSSLVNAMLGEERVIVSNV---------------AGTTRDAVDTSFTYN-------------- 241 (456)
T ss_dssp TCEEEEE---ECSTTSSHHHHHHHHHTSTTEEECC---------------------CTTSEEEEET--------------
T ss_pred ccceeEE---ecCCCCCHHHHHHHHhCCCccccCCC---------------CCeEEEEEEEEEEEC--------------
Confidence 5689999 99999999999999976544332222 246677666677776
Q ss_pred CCceeEEEeCCCC----------CCCchHH-HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPG----------HVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG----------~~df~~e-~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..++|||||| ++.|... ...+++.+|++|+|+|+.++...++..++..+...++|+++|+||+|+.
T Consensus 242 --~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 242 --QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp --TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred --CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 78999999999 4555444 3458899999999999999999999999999888899999999999997
Q ss_pred c
Q 007929 156 F 156 (584)
Q Consensus 156 ~ 156 (584)
.
T Consensus 320 ~ 320 (456)
T 4dcu_A 320 D 320 (456)
T ss_dssp C
T ss_pred C
Confidence 3
No 39
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.56 E-value=1.1e-14 Score=145.20 Aligned_cols=116 Identities=14% Similarity=0.080 Sum_probs=86.6
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|++....+..... +++|.......+.|.
T Consensus 21 ~~~~I~l---vG~~g~GKStl~n~l~~~~~~~~~~~~--------------~~~t~~~~~~~~~~~-------------- 69 (260)
T 2xtp_A 21 SELRIIL---VGKTGTGKSAAGNSILRKQAFESKLGS--------------QTLTKTCSKSQGSWG-------------- 69 (260)
T ss_dssp CCEEEEE---EECTTSCHHHHHHHHHTSCCSCCCTTS--------------CCCCCSCEEEEEEET--------------
T ss_pred CceEEEE---ECCCCCCHHHHHHHHhCCCCcccCCCC--------------CceeeeeEEEEEEeC--------------
Confidence 5689999 999999999999999876544322111 124555555566676
Q ss_pred CCceeEEEeCCCCCCCchH-----------HHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc-----CCceEEEEe
Q 007929 87 GNEYLINLIDSPGHVDFSS-----------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVN 150 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~-----------e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~-----~~p~ivviN 150 (584)
++.++||||||+.++.. .+..+++.+|++|+|+|+.. +..+...+|+.+.+. +.|+++++|
T Consensus 70 --~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~ 146 (260)
T 2xtp_A 70 --NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFT 146 (260)
T ss_dssp --TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred --CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEE
Confidence 78999999999988642 22336778999999999985 777777777776554 678888887
Q ss_pred -cCcccc
Q 007929 151 -KMDRCF 156 (584)
Q Consensus 151 -K~D~~~ 156 (584)
|+|+..
T Consensus 147 nK~Dl~~ 153 (260)
T 2xtp_A 147 HKEDLNG 153 (260)
T ss_dssp CGGGGTT
T ss_pred cccccCC
Confidence 999973
No 40
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.55 E-value=2.7e-14 Score=130.44 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=83.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+|++ +|+.|+|||||+++|+....... +...++|.+.....+.+.
T Consensus 2 ~ki~v---~G~~~~GKSsli~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~---------------- 47 (161)
T 2dyk_A 2 HKVVI---VGRPNVGKSSLFNRLLKKRSAVV---------------ADVPGVTRDLKEGVVETD---------------- 47 (161)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEET----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCCeeec---------------cCCCCceecceEEEEEeC----------------
Confidence 57888 99999999999999975432111 111234444444455555
Q ss_pred ceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+..+.+|||||+.+ +.......++.+|++++|+|+..+.......++..+...++|+++|+||+|+..
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 67899999999987 445566788999999999999998877777666666667899999999999974
No 41
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.54 E-value=2.8e-14 Score=143.35 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=84.8
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|++|+|||||+++|..... .. ....|+|++.....+.+.
T Consensus 2 ~~~~i~l---vG~~g~GKTTL~n~l~g~~~---~~-------------~~~~~~t~~~~~~~~~~~-------------- 48 (271)
T 3k53_A 2 VLKTVAL---VGNPNVGKTTIFNALTGLRQ---HV-------------GNWPGVTVEKKEGIMEYR-------------- 48 (271)
T ss_dssp CCEEEEE---EECSSSSHHHHHHHHHTTCE---EE-------------EECTTSSCEEEEEEEEET--------------
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHhCCCc---cc-------------CCCCCeEEEeeEEEEEEC--------------
Confidence 3578999 99999999999999954311 10 012356777777777777
Q ss_pred CCceeEEEeCCCCCCCchHH------HHHHh--hhcCeEEEEEeCCCCCchhHHHHHHHHHhcC-CceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSE------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e------~~~~l--~~~D~ailvvda~~g~~~~t~~~l~~~~~~~-~p~ivviNK~D~~ 155 (584)
++.+++|||||+.+|... ....+ ..+|++++|+|++.+ ......+.++...+ +|+++|+||+|+.
T Consensus 49 --~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 49 --EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp --TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred --CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 788999999999988763 22233 469999999999885 35556667777777 9999999999986
No 42
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.54 E-value=1.9e-14 Score=134.08 Aligned_cols=124 Identities=20% Similarity=0.130 Sum_probs=72.9
Q ss_pred CCccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhc
Q 007929 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (584)
Q Consensus 1 ~~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~ 80 (584)
|++.....++|++ +|+.|+|||||+++|+...-... ....++.+.....+.+.
T Consensus 1 Ms~~~~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~-------- 53 (182)
T 1ky3_A 1 MSSRKKNILKVII---LGDSGVGKTSLMHRYVNDKYSQQ----------------YKATIGADFLTKEVTVD-------- 53 (182)
T ss_dssp ------CEEEEEE---ECCTTSSHHHHHHHHHHSCCCTT----------------C---CCCSCEEEEECCS--------
T ss_pred CCcccCceEEEEE---ECCCCCCHHHHHHHHHhCcCCcc----------------cCCccceEEEEEEEEEc--------
Confidence 6666677899999 99999999999999975321100 00112222222222222
Q ss_pred ccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh-------cCCceEEEEecC
Q 007929 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG-------ERIRPVLTVNKM 152 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~-------~~~p~ivviNK~ 152 (584)
++....+.+|||||+.+|.......++.+|++|+|+|+.++........|.. +.. .++|+++|+||+
T Consensus 54 -----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 128 (182)
T 1ky3_A 54 -----GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128 (182)
T ss_dssp -----SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred -----CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence 1235789999999999998888888999999999999988755544444422 211 577899999999
Q ss_pred cccc
Q 007929 153 DRCF 156 (584)
Q Consensus 153 D~~~ 156 (584)
|+..
T Consensus 129 Dl~~ 132 (182)
T 1ky3_A 129 DAEE 132 (182)
T ss_dssp TSCG
T ss_pred cccc
Confidence 9964
No 43
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.53 E-value=7.1e-14 Score=138.48 Aligned_cols=117 Identities=18% Similarity=0.123 Sum_probs=86.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|++|+|||||+++|+.....+.... ..+.|.......+.+.
T Consensus 19 ~~~l~I~l---vG~~g~GKSSlin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~~------------- 68 (247)
T 3lxw_A 19 ESTRRLIL---VGRTGAGKSATGNSILGQRRFFSRLG--------------ATSVTRACTTGSRRWD------------- 68 (247)
T ss_dssp -CEEEEEE---ESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCcHHHHHHHHhCCCCccccCC--------------CCCccccEEEEEEEEC-------------
Confidence 35689999 99999999999999986554332211 1234555555566666
Q ss_pred CCCceeEEEeCCCCC--------CCchHHHHHHh----hhcCeEEEEEeCCCCCchhHHHHHHHHHhc------CCceEE
Q 007929 86 QGNEYLINLIDSPGH--------VDFSSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE------RIRPVL 147 (584)
Q Consensus 86 ~~~~~~inliDTPG~--------~df~~e~~~~l----~~~D~ailvvda~~g~~~~t~~~l~~~~~~------~~p~iv 147 (584)
+..++||||||. .+|..++.+++ +.+|++|+|+|+.. ....+..+++.+.+. +.|+++
T Consensus 69 ---~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iil 144 (247)
T 3lxw_A 69 ---KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIV 144 (247)
T ss_dssp ---TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred ---CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEE
Confidence 789999999998 66778887777 89999999999974 666666666665443 678899
Q ss_pred EEecCcccc
Q 007929 148 TVNKMDRCF 156 (584)
Q Consensus 148 viNK~D~~~ 156 (584)
|+||+|+..
T Consensus 145 v~nK~Dl~~ 153 (247)
T 3lxw_A 145 FTRKEDLAG 153 (247)
T ss_dssp EECGGGGTT
T ss_pred EEchHhcCC
Confidence 999999973
No 44
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.52 E-value=2.5e-14 Score=138.58 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=82.6
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCc-cccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
..++|++ +|+.|+|||||+++|+..... ..... .+.|.......+.+
T Consensus 28 ~~~~i~v---~G~~~~GKSslin~l~~~~~~~~~~~~---------------~~~t~~~~~~~~~~-------------- 75 (223)
T 4dhe_A 28 VQPEIAF---AGRSNAGKSTAINVLCNQKRLAFASKT---------------PGRTQHINYFSVGP-------------- 75 (223)
T ss_dssp CSCEEEE---EESCHHHHHHHHHHHTTCSSSSCTTCC---------------CCSCCCEEEEEESC--------------
T ss_pred CCCEEEE---EcCCCCCHHHHHHHHhCCCcceeecCC---------------CCcccceEEEEecC--------------
Confidence 4678999 999999999999999754321 11111 12344333322221
Q ss_pred CCCceeEEEeCCCCCCC----------chHHHHHHhh---hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecC
Q 007929 86 QGNEYLINLIDSPGHVD----------FSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (584)
Q Consensus 86 ~~~~~~inliDTPG~~d----------f~~e~~~~l~---~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~ 152 (584)
..+..++||||||+.+ |...+...++ .+|++++|+|+.++.......++..+...++|+++|+||+
T Consensus 76 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~ 154 (223)
T 4dhe_A 76 -AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKC 154 (223)
T ss_dssp -TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECG
T ss_pred -CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecc
Confidence 1267899999999743 2333334444 4888999999999988888888888777889999999999
Q ss_pred cccc
Q 007929 153 DRCF 156 (584)
Q Consensus 153 D~~~ 156 (584)
|+..
T Consensus 155 Dl~~ 158 (223)
T 4dhe_A 155 DKLT 158 (223)
T ss_dssp GGSC
T ss_pred ccCC
Confidence 9973
No 45
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=132.79 Aligned_cols=123 Identities=16% Similarity=0.117 Sum_probs=85.0
Q ss_pred CCccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhc
Q 007929 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (584)
Q Consensus 1 ~~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~ 80 (584)
|++-....++|++ +|+.|+|||||+++|+..... .+....++.+.....+.+.
T Consensus 2 m~~~~~~~~~i~v---~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~-------- 54 (181)
T 3tw8_B 2 MARDYDHLFKLLI---IGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEIN-------- 54 (181)
T ss_dssp ----CCEEEEEEE---ECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEET--------
T ss_pred CccccCcceEEEE---ECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEEC--------
Confidence 5555677899999 999999999999999532110 1111223444444444444
Q ss_pred ccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-Hh--cCCceEEEEecCcccc
Q 007929 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-LG--ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-~~--~~~p~ivviNK~D~~~ 156 (584)
+..+.+++|||||+.+|.......++.+|++|+|+|+.++........|... .. .++|+++|+||+|+..
T Consensus 55 ------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 55 ------GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp ------TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred ------CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 2247899999999999988888899999999999999987555554444322 22 3578899999999873
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.51 E-value=8.2e-14 Score=130.66 Aligned_cols=122 Identities=20% Similarity=0.127 Sum_probs=85.6
Q ss_pred CCccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhc
Q 007929 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (584)
Q Consensus 1 ~~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~ 80 (584)
|+.-..+.++|++ +|+.|+|||||+++|+........ ...++.+.....+.+.
T Consensus 3 m~~~~~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~-------- 55 (186)
T 2bme_A 3 MSETYDFLFKFLV---IGNAGTGKSCLLHQFIEKKFKDDS----------------NHTIGVEFGSKIINVG-------- 55 (186)
T ss_dssp -CCCCSEEEEEEE---EESTTSSHHHHHHHHHHSSCCTTC----------------CCCSEEEEEEEEEEET--------
T ss_pred cccccccceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEEC--------
Confidence 4555567899999 999999999999999754321110 0112222222233332
Q ss_pred ccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH----HHhcCCceEEEEecCccc
Q 007929 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ----ALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~----~~~~~~p~ivviNK~D~~ 155 (584)
+....+.+|||||+.+|.......++.+|++|+|+|+.+....+....|.. ....++|+++|+||+|+.
T Consensus 56 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 56 ------GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp ------TEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred ------CEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 224789999999999999989999999999999999988655544444422 123578889999999996
No 47
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.51 E-value=1.3e-13 Score=128.00 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=82.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+........ .. ..+.+.... .+.+.
T Consensus 13 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~~~--~~~~~------------- 60 (179)
T 1z0f_A 13 SYIFKYII---IGDMGVGKSCLLHQFTEKKFMADC--PH------------TIGVEFGTR--IIEVS------------- 60 (179)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHHSCCCSSC--TT------------SCCCCEEEE--EEEET-------------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC--CC------------ccceEEEEE--EEEEC-------------
Confidence 35789999 999999999999999764321100 00 001122221 22222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HH---hcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~---~~~~p~ivviNK~D~~ 155 (584)
+....+.+|||||+.+|.......++.+|++|+|+|+.++........|.. +. ..++|+++|+||+|+.
T Consensus 61 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 61 -GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp -TEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred -CeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 225789999999999999999999999999999999998755554444422 22 2577889999999996
No 48
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.50 E-value=4.4e-14 Score=133.48 Aligned_cols=129 Identities=20% Similarity=0.167 Sum_probs=82.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||++.|....... ..+ ....... +...|+........ ....
T Consensus 12 ~~~~ki~v---vG~~~~GKssL~~~l~~~~~~~---~~~-~~~~~~~----~~~~t~~~~~~~~~-----------~~~~ 69 (198)
T 3t1o_A 12 EINFKIVY---YGPGLSGKTTNLKWIYSKVPEG---RKG-EMVSLAT----EDERTLFFDFLPLD-----------IGEV 69 (198)
T ss_dssp EEEEEEEE---ECSTTSSHHHHHHHHHHTSCGG---GBC-CCEEEEC----SSCEEEEEEECCSS-----------CCCS
T ss_pred ccccEEEE---ECCCCCCHHHHHHHHHhhcccc---ccc-ccccccc----ccccceeeeecccc-----------cccc
Confidence 46789999 9999999999996663221110 000 0000000 00011111110000 0022
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh---------cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---------ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~---------~~~p~ivviNK~D~~~ 156 (584)
++....+++|||||+.+|.......++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 70 KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp SSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred cCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 3447889999999999999999999999999999999997766666555544322 4788999999999974
No 49
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.50 E-value=3.2e-14 Score=133.18 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=63.3
Q ss_pred CCccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhc
Q 007929 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (584)
Q Consensus 1 ~~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~ 80 (584)
|++-....++|++ +|+.|+|||||+++|+...- ..+....++.+.....+.+.
T Consensus 1 M~~~~~~~~ki~v---~G~~~~GKssl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~-------- 53 (183)
T 2fu5_C 1 MAKTYDYLFKLLL---IGDSGVGKTCVLFRFSEDAF----------------NSTFISTIGIDFKIRTIELD-------- 53 (183)
T ss_dssp --CCCSEEEEEEE---ECCCCC--------------------------------CHHHHHCEEEEEEEEEET--------
T ss_pred CCcccCCceEEEE---ECCCCCCHHHHHHHHHhCCC----------------CCCCCCcccceeEEEEEEEC--------
Confidence 5555567899999 99999999999999963211 01111223333333333333
Q ss_pred ccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCccc
Q 007929 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~ 155 (584)
+....++||||||+.+|.......++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 54 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 54 ------GKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp ------TEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred ------CEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 2248899999999999988778888999999999999886544443333 23322 367889999999996
No 50
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=6.4e-14 Score=130.54 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=76.6
Q ss_pred cccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccc
Q 007929 4 YCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (584)
Q Consensus 4 ~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~ 83 (584)
.....++|++ +|+.|+|||||+++|+......... ...++.+.....+.+.
T Consensus 6 ~~~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~~---------------~~t~~~~~~~~~~~~~----------- 56 (180)
T 2g6b_A 6 FYDVAFKVML---VGDSGVGKTCLLVRFKDGAFLAGTF---------------ISTVGIDFRNKVLDVD----------- 56 (180)
T ss_dssp CCSEEEEEEE---ECSTTSSHHHHHHHHHHSCCCCCCC---------------CCCCSCEEEEEEEEET-----------
T ss_pred cCCcceEEEE---ECcCCCCHHHHHHHHHhCCCCCCCc---------------CCceeeEEEEEEEEEC-----------
Confidence 3457789999 9999999999999997643211110 0112222222222222
Q ss_pred cCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCcccc
Q 007929 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 84 ~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~~ 156 (584)
+....+++|||||+.+|.......++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+..
T Consensus 57 ---~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 57 ---GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp ---TEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred ---CEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 2256899999999999988888899999999999999886554443333 22222 5788999999999973
No 51
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.50 E-value=2.6e-13 Score=124.37 Aligned_cols=110 Identities=20% Similarity=0.144 Sum_probs=80.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|+.|+|||||+++|+...-. +. .-|+......+.+.
T Consensus 1 ~ki~~---~G~~~~GKssl~~~l~~~~~~------------~~-------~~t~~~~~~~~~~~---------------- 42 (164)
T 1r8s_A 1 MRILM---VGLDAAGKTTILYKLKLGEIV------------TT-------IPTIGFNVETVEYK---------------- 42 (164)
T ss_dssp CEEEE---ECSTTSSHHHHHHHHHHHCSS------------CC-------CCCSSCCEEEEECS----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcCCcC------------cc-------cCcCceeEEEEEEC----------------
Confidence 47888 999999999999999754311 00 01333223334444
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+.+|.......++.+|++++|+|+.+.-..... ..+..+.. .+.|+++|+||+|+..
T Consensus 43 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 78999999999999998888899999999999999876443333 23333333 2788999999999973
No 52
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.50 E-value=1.8e-13 Score=127.29 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=83.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...- ..+....++.+.....+.+.
T Consensus 4 ~~~~ki~v---~G~~~~GKssl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~------------- 51 (178)
T 2hxs_A 4 MRQLKIVV---LGDGASGKTSLTTCFAQETF----------------GKQYKQTIGLDFFLRRITLP------------- 51 (178)
T ss_dssp CCEEEEEE---ECCTTSSHHHHHHHHHGGGT----------------THHHHHTTTSSEEEEEEEET-------------
T ss_pred CceEEEEE---ECcCCCCHHHHHHHHHhCcC----------------CCCCCCceeEEEEEEEEEeC-------------
Confidence 35689999 99999999999999964321 11112223333333344443
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh------cCCc-eEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ERIR-PVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~------~~~p-~ivviNK~D~~~ 156 (584)
+.....+++|||||+.+|.......++.+|++|+|+|+++....+....|..... .+.| +++|+||+|+..
T Consensus 52 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 52 GNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp TTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred CCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 1124789999999999999999999999999999999988655444444433222 2667 578999999973
No 53
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=1.8e-13 Score=125.77 Aligned_cols=117 Identities=21% Similarity=0.163 Sum_probs=81.5
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|+.|+|||||+++|+...-.... ...++.......+.+.
T Consensus 2 ~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~-------------- 48 (170)
T 1ek0_A 2 TSIKLVL---LGEAAVGKSSIVLRFVSNDFAENK----------------EPTIGAAFLTQRVTIN-------------- 48 (170)
T ss_dssp EEEEEEE---ECSTTSSHHHHHHHHHHSCCCTTC----------------CCCSSEEEEEEEEEET--------------
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEEC--------------
Confidence 4689999 999999999999999754321100 0011222212222222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHH---hcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~---~~~~p~ivviNK~D~~~ 156 (584)
+....+.+|||||+.+|.......++.+|++++|+|+.+.........|. .+. ..++|+++++||+|+..
T Consensus 49 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 49 EHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 22578999999999999999999999999999999998865544444332 222 24778889999999974
No 54
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.49 E-value=1.6e-14 Score=153.63 Aligned_cols=116 Identities=21% Similarity=0.148 Sum_probs=87.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+.... ...+..+++|++.....+.+..
T Consensus 32 ~~~~kI~I---vG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~~------------ 81 (423)
T 3qq5_A 32 GFRRYIVV---AGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELHP------------ 81 (423)
T ss_dssp CCCEEEEE---ECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETT------------
T ss_pred CCCEEEEE---ECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEECC------------
Confidence 35679999 99999999999999954322 1223455778888777777761
Q ss_pred CCCceeEEEeCCCCCCCchHH-------HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSE-------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e-------~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
...++|||||||.+|... +..+++.+|++|+|+|+ +...++...+..+.+.++|+++|+||+|+..
T Consensus 82 ---~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 82 ---IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLG 154 (423)
T ss_dssp ---TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTT
T ss_pred ---CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCC
Confidence 248999999999987532 56778889999999999 8888999999988888999999999999984
No 55
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.49 E-value=7.6e-14 Score=132.30 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=83.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+..... .+....++.+.....+.+.
T Consensus 24 ~~~~ki~v---vG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~------------- 71 (192)
T 2il1_A 24 DFKLQVII---IGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELR------------- 71 (192)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEEC-------------
Confidence 46689999 999999999999999532110 1111123333333333333
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH----hcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~----~~~~p~ivviNK~D~~~ 156 (584)
+....+.+|||||+.+|.......++.+|++|+|+|+.++...+....|.... ..++|+++|+||+|+..
T Consensus 72 -~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 72 -GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp -TEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -CeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 22578999999999999999999999999999999999876665554443322 23788999999999963
No 56
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.49 E-value=6.9e-14 Score=133.63 Aligned_cols=122 Identities=20% Similarity=0.140 Sum_probs=82.1
Q ss_pred CCccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhc
Q 007929 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (584)
Q Consensus 1 ~~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~ 80 (584)
|++-....++|++ +|+.|+|||||+++|+........ ...++.+.....+.+.
T Consensus 1 M~~~~~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~-------- 53 (207)
T 1vg8_A 1 MTSRKKVLLKVII---LGDSGVGKTSLMNQYVNKKFSNQY----------------KATIGADFLTKEVMVD-------- 53 (207)
T ss_dssp ------CEEEEEE---ECCTTSSHHHHHHHHHHSCCCSSC----------------CCCCSEEEEEEEEESS--------
T ss_pred CCcccCcceEEEE---ECcCCCCHHHHHHHHHcCCCCCCC----------------CCcccceEEEEEEEEC--------
Confidence 6666677899999 999999999999999754321100 0112222222223222
Q ss_pred ccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-Hh-------cCCceEEEEecC
Q 007929 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-LG-------ERIRPVLTVNKM 152 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-~~-------~~~p~ivviNK~ 152 (584)
+..+.+.||||||+.+|.......++.+|++|+|+|+.++........|... .. .++|+++|+||+
T Consensus 54 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (207)
T 1vg8_A 54 ------DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127 (207)
T ss_dssp ------SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECT
T ss_pred ------CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 2357899999999999988888889999999999999887555444444221 11 477899999999
Q ss_pred ccc
Q 007929 153 DRC 155 (584)
Q Consensus 153 D~~ 155 (584)
|+.
T Consensus 128 Dl~ 130 (207)
T 1vg8_A 128 DLE 130 (207)
T ss_dssp TSS
T ss_pred CCc
Confidence 997
No 57
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.49 E-value=1.3e-13 Score=128.63 Aligned_cols=117 Identities=18% Similarity=0.134 Sum_probs=82.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-... ....++.......+.+.
T Consensus 10 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~------------- 57 (181)
T 2efe_B 10 SINAKLVL---LGDVGAGKSSLVLRFVKDQFVEF----------------QESTIGAAFFSQTLAVN------------- 57 (181)
T ss_dssp CEEEEEEE---ECCTTSCHHHHHHHHHHCCCTTT----------------SCCCSCCSEEEEEEEET-------------
T ss_pred ccceEEEE---ECcCCCCHHHHHHHHHcCCCCCc----------------CCCCceeEEEEEEEEEC-------------
Confidence 46789999 99999999999999975322110 01112222222222222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~ 155 (584)
+....+.||||||+.+|.......++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 58 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 58 -DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp -TEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred -CEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 2257899999999999999999999999999999999876554444333 33333 267888999999996
No 58
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=1.3e-13 Score=130.13 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=82.4
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
..+.++|++ +|+.|+|||||+++|+...-... ....++.......+.+.
T Consensus 12 ~~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~------------ 60 (195)
T 1x3s_A 12 VLTTLKILI---IGESGVGKSSLLLRFTDDTFDPE----------------LAATIGVDFKVKTISVD------------ 60 (195)
T ss_dssp EEEEEEEEE---ECSTTSSHHHHHHHHHHSCCCTT----------------CCCCCSEEEEEEEEEET------------
T ss_pred CCCceEEEE---ECCCCCCHHHHHHHHHcCCCCcc----------------CCCccceEEEEEEEEEC------------
Confidence 346789999 99999999999999975422100 00011112112222222
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHHh----cCCceEEEEecCccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~~----~~~p~ivviNK~D~~ 155 (584)
+....+.||||||+.+|.......++.+|++|+|+|+.+.........|. .+.. .++|+++|+||+|+.
T Consensus 61 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 61 --GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp --TEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred --CeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 22688999999999999998999999999999999998875554444443 3322 367888999999995
No 59
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.49 E-value=9.7e-14 Score=149.14 Aligned_cols=112 Identities=24% Similarity=0.305 Sum_probs=84.5
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|+| +|++|+|||||+++|+.....+.. ...|+|.+.....+.|. +
T Consensus 3 ~v~i---vG~pnvGKStL~nrl~~~~~~~v~---------------~~~g~T~d~~~~~~~~~----------------~ 48 (439)
T 1mky_A 3 TVLI---VGRPNVGKSTLFNKLVKKKKAIVE---------------DEEGVTRDPVQDTVEWY----------------G 48 (439)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEET----------------T
T ss_pred EEEE---ECCCCCCHHHHHHHHhCCCCceec---------------CCCCCccceeeEEEEEC----------------C
Confidence 6888 999999999999999754332221 12357777777778887 7
Q ss_pred eeEEEeCCCCCCC---------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~d---------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
..+.+|||||..+ +...+..+++.||++|+|+|+..|.....+.+...+.+.++|+++|+||+|+.
T Consensus 49 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 49 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred eEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 8999999999875 23456778999999999999999998888777776666789999999999986
No 60
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.49 E-value=2.4e-13 Score=125.41 Aligned_cols=113 Identities=19% Similarity=0.114 Sum_probs=82.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...-. . ...|+......+.+.
T Consensus 5 ~~~~~i~v---~G~~~~GKssl~~~l~~~~~~------------~-------~~~t~~~~~~~~~~~------------- 49 (171)
T 1upt_A 5 TREMRILI---LGLDGAGKTTILYRLQVGEVV------------T-------TIPTIGFNVETVTYK------------- 49 (171)
T ss_dssp SSCEEEEE---ECSTTSSHHHHHHHHHHSSCC------------C-------CCCCSSEEEEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCCCC------------C-------cCCcCccceEEEEEC-------------
Confidence 45689999 999999999999999653210 0 012333333344454
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+.+|||||+.+|.......++.+|++++|+|+.+.-..... ..+..+.. .++|+++|+||+|+..
T Consensus 50 ---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 50 ---NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp ---TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 78999999999999988888899999999999999887544333 23333333 4788999999999974
No 61
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.49 E-value=2.1e-13 Score=125.35 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=81.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-.... +...+.+... ..+.+.
T Consensus 4 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~--------------~~~~~~~~~~--~~~~~~------------- 51 (170)
T 1r2q_A 4 ICQFKLVL---LGESAVGKSSLVLRFVKGQFHEFQ--------------ESTIGAAFLT--QTVCLD------------- 51 (170)
T ss_dssp EEEEEEEE---ECSTTSSHHHHHHHHHHSCCCTTC--------------CCCSSEEEEE--EEEEET-------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHHcCCCCCCC--------------CCccceEEEE--EEEEEC-------------
Confidence 35689999 999999999999999753211000 0001111211 122222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~~ 156 (584)
+.++.+++|||||+.+|.......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 52 -~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 52 -DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp -TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -CEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 2267899999999999999999999999999999999876544444333 33332 3677889999999863
No 62
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.48 E-value=5e-14 Score=133.29 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=84.4
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-... ....++.+.....+.+.
T Consensus 14 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~------------- 61 (196)
T 3tkl_A 14 DYLFKLLL---IGDSGVGKSCLLLRFADDTYTES----------------YISTIGVDFKIRTIELD------------- 61 (196)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHHSCCCSC----------------CCCCSSEEEEEEEEEET-------------
T ss_pred ccceEEEE---ECcCCCCHHHHHHHHHcCCCCCC----------------CCCcccceEEEEEEEEC-------------
Confidence 46789999 99999999999999975322110 01123333333344443
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HH---hcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~---~~~~p~ivviNK~D~~~ 156 (584)
+..+.+.||||||+.+|.......++.+|++|+|+|+.+....+....|.. +. ..++|+++|+||+|+..
T Consensus 62 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 62 -GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp -TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred -CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 224789999999999999999999999999999999998654444433432 22 23788999999999873
No 63
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.48 E-value=1.8e-13 Score=129.70 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=83.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
....+|++ +|+.|+|||||+++|+...-... ++ ..|+......+.+.
T Consensus 15 ~~~~ki~v---~G~~~~GKSsl~~~l~~~~~~~~----------~~-------~~t~~~~~~~~~~~------------- 61 (199)
T 4bas_A 15 KTKLQVVM---CGLDNSGKTTIINQVKPAQSSSK----------HI-------TATVGYNVETFEKG------------- 61 (199)
T ss_dssp -CEEEEEE---ECCTTSCHHHHHHHHSCCC--------------CC-------CCCSSEEEEEEEET-------------
T ss_pred CCCcEEEE---ECCCCCCHHHHHHHHhcCCCccc----------cc-------ccccceeEEEEEeC-------------
Confidence 46789999 99999999999999953221110 00 11333333334444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHhc-----------CCceEEEEecCc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGE-----------RIRPVLTVNKMD 153 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~~-----------~~p~ivviNK~D 153 (584)
++.++||||||+.+|.......++.+|++|+|+|+.++...... ..+..+... ++|+++|+||+|
T Consensus 62 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~D 138 (199)
T 4bas_A 62 ---RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD 138 (199)
T ss_dssp ---TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTT
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcC
Confidence 78999999999999999888999999999999999987654444 333444443 789999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 139 l~~ 141 (199)
T 4bas_A 139 AAG 141 (199)
T ss_dssp STT
T ss_pred CCC
Confidence 974
No 64
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.48 E-value=2.4e-13 Score=127.16 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=80.1
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhcccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRG 83 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~ 83 (584)
....++|++ +|+.|+|||||+++|+...-. .... .|+.... ....+.
T Consensus 15 ~~~~~ki~v---~G~~~~GKSsl~~~l~~~~~~--~~~~----------------~t~~~~~~~~~~~~----------- 62 (183)
T 3kkq_A 15 NLPTYKLVV---VGDGGVGKSALTIQFFQKIFV--DDYD----------------PTIEDSYLKHTEID----------- 62 (183)
T ss_dssp CCCEEEEEE---ECSTTSSHHHHHHHHHHSCCC--SCCC----------------TTCCEEEEEEEEET-----------
T ss_pred CCCceEEEE---ECCCCCCHHHHHHHHHhCCCC--CCCC----------------CCccceeEEEEEeC-----------
Confidence 346789999 999999999999999743211 1000 1111111 111222
Q ss_pred cCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-----HHHHhcCCceEEEEecCccc
Q 007929 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 84 ~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-----~~~~~~~~p~ivviNK~D~~ 155 (584)
+....+++|||||+.+|.......++.+|++++|+|+.++........| +.....++|+++|+||+|+.
T Consensus 63 ---~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 63 ---NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp ---TEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred ---CcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 2356788899999999999999999999999999999886443333333 22223578899999999986
No 65
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.48 E-value=3.9e-13 Score=123.17 Aligned_cols=116 Identities=22% Similarity=0.218 Sum_probs=76.6
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|+...- ...... .+.......+.+.
T Consensus 3 ~~~~i~v---~G~~~~GKssl~~~l~~~~~--~~~~~~---------------t~~~~~~~~~~~~-------------- 48 (168)
T 1u8z_A 3 ALHKVIM---VGSGGVGKSALTLQFMYDEF--VEDYEP---------------TKADSYRKKVVLD-------------- 48 (168)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHSCC--CSCCCT---------------TCCEEEEEEEEET--------------
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHHhCcc--CCCCCC---------------CcceEEEEEEEEC--------------
Confidence 4589999 99999999999999975431 111010 0001111112222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+.+.+|||||+.+|.......++.+|++++|+|+.+.........| ..+.. .++|+++++||+|+..
T Consensus 49 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 49 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp TEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 2257899999999999999999999999999999999875443333333 22221 3789999999999973
No 66
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.48 E-value=1.9e-13 Score=126.96 Aligned_cols=117 Identities=21% Similarity=0.170 Sum_probs=81.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-.. +....++.......+.+.
T Consensus 5 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~------------- 52 (177)
T 1wms_A 5 SSLFKVIL---LGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVD------------- 52 (177)
T ss_dssp EEEEEEEE---ECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEET-------------
T ss_pred cceeEEEE---ECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeeEEEEEEEEC-------------
Confidence 46789999 9999999999999997532110 011112222222333333
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH----Hh----cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~----~~----~~~p~ivviNK~D~~ 155 (584)
+....+.+|||||+.+|.......++.+|++++|+|+.++...+....|... .. .++|+++|+||+|+.
T Consensus 53 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 53 -GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp -TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred -CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 2246899999999999998888899999999999999887554444433221 12 577899999999986
No 67
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=132.01 Aligned_cols=117 Identities=21% Similarity=0.239 Sum_probs=79.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-.. . .....|.+.... .+.+.
T Consensus 26 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~--~------------~~~t~~~~~~~~--~~~~~------------- 73 (199)
T 2p5s_A 26 QKAYKIVL---AGDAAVGKSSFLMRLCKNEFRE--N------------ISATLGVDFQMK--TLIVD------------- 73 (199)
T ss_dssp --CEEEEE---ESSTTSSHHHHHHHHHHCCCC------------------------CEEE--EEEET-------------
T ss_pred CCCeEEEE---ECcCCCCHHHHHHHHHhCCCCc--c------------CCCCccceeEEE--EEEEC-------------
Confidence 45689999 9999999999999997532100 0 000111222222 22222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
+....++||||||+.+|.......++.+|++|+|+|+.++...+....|..... .++|+++|+||+|+.
T Consensus 74 -~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 74 -GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp -TEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred -CEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 225789999999999999999999999999999999988765555444433222 378999999999996
No 68
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=3.5e-13 Score=126.82 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=79.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...-. +. .-|+......+.+.
T Consensus 14 ~~~~~i~v---~G~~~~GKssl~~~l~~~~~~------------~~-------~~t~~~~~~~~~~~------------- 58 (187)
T 1zj6_A 14 HQEHKVII---VGLDNAGKTTILYQFSMNEVV------------HT-------SPTIGSNVEEIVIN------------- 58 (187)
T ss_dssp TSCEEEEE---EESTTSSHHHHHHHHHTTSCE------------EE-------ECCSCSSCEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCCCC------------cC-------cCCCccceEEEEEC-------------
Confidence 46789999 999999999999999643211 00 01232233344444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+.+|||||+.+|.......++.+|++|+|+|++++....... .+..+.+ .++|+++|+||+|+..
T Consensus 59 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 59 ---NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp ---TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 689999999999999988889999999999999999875444333 3334433 4788999999999973
No 69
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=1.1e-13 Score=131.21 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=82.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...-... .. ...|.+..... +.+.
T Consensus 21 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~--~~------------~~~~~~~~~~~--~~~~------------- 68 (192)
T 2fg5_A 21 IRELKVCL---LGDTGVGKSSIVCRFVQDHFDHN--IS------------PTIGASFMTKT--VPCG------------- 68 (192)
T ss_dssp CEEEEEEE---EECTTSSHHHHHHHHHHCCCCTT--CC------------CCSSEEEEEEE--EECS-------------
T ss_pred CCceEEEE---ECcCCCCHHHHHHHHhcCCCCCC--cC------------CCcceeEEEEE--EEeC-------------
Confidence 46789999 99999999999999975431100 00 00112221111 1111
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH-h---cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~-~---~~~p~ivviNK~D~~ 155 (584)
.....+.||||||+.+|.......++.+|++|+|+|+.+.........|.... + .++|+++|+||+|+.
T Consensus 69 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 69 -NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp -SSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred -CEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 23688999999999999999999999999999999998876555544443322 2 378889999999996
No 70
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.47 E-value=2e-13 Score=127.28 Aligned_cols=115 Identities=21% Similarity=0.281 Sum_probs=79.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
...+|++ +|++|+|||||+++|........... .++|.+.....+.+.
T Consensus 3 ~~~ki~i---vG~~g~GKStLl~~l~~~~~~~~~~~---------------~~~t~~~~~~~~~~~-------------- 50 (172)
T 2gj8_A 3 HGMKVVI---AGRPNAGKSSLLNALAGREAAIVTDI---------------AGTTRDVLREHIHID-------------- 50 (172)
T ss_dssp -CEEEEE---EESTTSSHHHHHHHHHTSCCSCCCSS---------------TTCCCSCEEEEEEET--------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCcceeeCC---------------CCceeceeeEEEEEC--------------
Confidence 4578999 99999999999999965432111111 123444333344444
Q ss_pred CCceeEEEeCCCCCCCchHH--------HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh---cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e--------~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
+..+.+|||||+.++... +...++.+|++++|+|+++.........|..+.+ .++|+++|+||+|+.
T Consensus 51 --~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 51 --GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp --TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred --CeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 577999999999765322 2246789999999999998776655545444433 268899999999985
No 71
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.47 E-value=6e-14 Score=134.28 Aligned_cols=123 Identities=17% Similarity=0.112 Sum_probs=85.2
Q ss_pred CCccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhc
Q 007929 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (584)
Q Consensus 1 ~~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~ 80 (584)
|+.-....++|++ +|+.|+|||||+++|+...-... ....++.......+.+.
T Consensus 1 M~~~~~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~-------- 53 (206)
T 2bcg_Y 1 MNSEYDYLFKLLL---IGNSGVGKSCLLLRFSDDTYTND----------------YISTIGVDFKIKTVELD-------- 53 (206)
T ss_dssp --CCCSEEEEEEE---EESTTSSHHHHHHHHHHCCCCTT----------------CCCSSCCCEEEEEEEET--------
T ss_pred CCcccCcceEEEE---ECCCCCCHHHHHHHHhcCCCCCC----------------CCCcccceeEEEEEEEC--------
Confidence 5544467799999 99999999999999975322100 01112222222233333
Q ss_pred ccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HH---hcCCceEEEEecCcccc
Q 007929 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 81 ~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~---~~~~p~ivviNK~D~~~ 156 (584)
+..+.+.||||||+.+|.......++.+|++|+|+|+.++........|.. +. ..++|+++|+||+|+..
T Consensus 54 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 54 ------GKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp ------TEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred ------CEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 225689999999999998888889999999999999998765555444432 22 23678899999999973
No 72
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.47 E-value=5.5e-13 Score=122.02 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=78.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhcccee-cceEEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~-~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
+.++|++ +|++|+|||||+++|+...-.. .... |+. .....+.+.
T Consensus 2 ~~~~i~v---~G~~~~GKSsli~~l~~~~~~~--~~~~----------------~~~~~~~~~~~~~------------- 47 (167)
T 1kao_A 2 REYKVVV---LGSGGVGKSALTVQFVTGTFIE--KYDP----------------TIEDFYRKEIEVD------------- 47 (167)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHHSCCCS--CCCT----------------TCCEEEEEEEEET-------------
T ss_pred cEEEEEE---ECCCCCCHHHHHHHHHcCCCcc--cCCC----------------CcceeEEEEEEEC-------------
Confidence 4589999 9999999999999997542211 0000 111 111112222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHH----hcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~----~~~~p~ivviNK~D~~ 155 (584)
+....+++|||||+.+|.......++.+|++++|+|+.+........ .+..+. ..++|+++++||+|+.
T Consensus 48 -~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 48 -SSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp -TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred -CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 22567999999999999999999999999999999998754433322 222222 2478999999999986
No 73
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.47 E-value=5.7e-13 Score=128.20 Aligned_cols=131 Identities=18% Similarity=0.169 Sum_probs=82.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...-. .. ..|+......+.+.
T Consensus 5 ~~~~ki~v---vG~~~~GKTsli~~l~~~~~~--~~-----------------~~~~~~~~~~~~~~------------- 49 (214)
T 2fh5_B 5 SSQRAVLF---VGLCDSGKTLLFVRLLTGQYR--DT-----------------QTSITDSSAIYKVN------------- 49 (214)
T ss_dssp ---CEEEE---ECSTTSSHHHHHHHHHHSCCC--CB-----------------CCCCSCEEEEEECS-------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhCCCcc--cc-----------------cCCcceeeEEEEec-------------
Confidence 45689999 999999999999999754311 00 01111122223333
Q ss_pred CCCceeEEEeCCCCCCCchH-HHHHHhhhcCeEEEEEeCCCCCchhHH---HHHHHHH------hcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTE---TVLRQAL------GERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~-e~~~~l~~~D~ailvvda~~g~~~~t~---~~l~~~~------~~~~p~ivviNK~D~~ 155 (584)
+..+..+++|||||+.+|.. .....++.+|++|+|+|++. ...... ..|.... ..++|+++|+||+|+.
T Consensus 50 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (214)
T 2fh5_B 50 NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 128 (214)
T ss_dssp STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred CCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC
Confidence 11257899999999999987 55667899999999999986 222222 2333322 2367889999999997
Q ss_pred cccccCCHHHHHHHHHHHHH
Q 007929 156 FLELQVDGEEAYQTFQKVIE 175 (584)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~ 175 (584)
. ....+.....+++.+.
T Consensus 129 ~---~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 129 M---AKSAKLIQQQLEKELN 145 (214)
T ss_dssp T---CCCHHHHHHHHHHHHH
T ss_pred C---cccHHHHHHHHHHHHH
Confidence 4 2234444444444444
No 74
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.47 E-value=3.1e-13 Score=127.48 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=83.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...-.. + ...|+......+.+.
T Consensus 20 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~-----------~-------~~~t~~~~~~~~~~~------------- 65 (188)
T 1zd9_A 20 KEEMELTL---VGLQYSGKTTFVNVIASGQFNE-----------D-------MIPTVGFNMRKITKG------------- 65 (188)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHHSCCCC-----------S-------CCCCCSEEEEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHHcCCCCC-----------c-------cCCCCceeEEEEEeC-------------
Confidence 46789999 9999999999999997532210 0 011233333334444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
++.++||||||+.+|.......++.+|++|+|+|+++.-..+.. ..+..+.. .++|+++|+||+|+..
T Consensus 66 ---~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 66 ---NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp ---TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 78999999999999998889999999999999999876444333 23333333 5788999999999974
No 75
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.47 E-value=2.6e-13 Score=127.70 Aligned_cols=126 Identities=19% Similarity=0.023 Sum_probs=82.6
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce---EEEEeecchhhhhcc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG---ISLYYEMTDAALKSY 81 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~---~~~~~~~~~~~~~~~ 81 (584)
....++|++ +|+.|+|||||+++|+...-... ...|+.... ..+.+.... .
T Consensus 8 ~~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~-----~ 61 (195)
T 3bc1_A 8 YDYLIKFLA---LGDSGVGKTSVLYQYTDGKFNSK------------------FITTVGIDFREKRVVYRANGP-----D 61 (195)
T ss_dssp CSEEEEEEE---ECSTTSSHHHHHHHHHHSCCCCS------------------CCCCCSEEEEEEEEEECTTSC-----C
T ss_pred cceeEEEEE---ECCCCCCHHHHHHHHhcCCCCcC------------------cccccceeeeeEEEEEecCCc-----c
Confidence 356789999 99999999999999975321100 001111111 111111000 0
Q ss_pred cccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHHh----cCCceEEEEecCcccc
Q 007929 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 82 ~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~~----~~~p~ivviNK~D~~~ 156 (584)
..........+++|||||+.+|.......++.+|++|+|+|+...........|. .+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 62 GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp CSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred cccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 0000111578999999999999999999999999999999998876555543332 2222 5788999999999963
No 76
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.47 E-value=1.3e-13 Score=131.41 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=81.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-.... . ..++.......+.+.
T Consensus 6 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~--~--------------~t~~~~~~~~~~~~~------------- 53 (203)
T 1zbd_A 6 DYMFKILI---IGNSSVGKTSFLFRYADDSFTPAF--V--------------STVGIDFKVKTIYRN------------- 53 (203)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHTCCCCSCC--C--------------CCCSEEEEEEEEEET-------------
T ss_pred ceeeEEEE---ECCCCCCHHHHHHHHhcCCCCCCc--C--------------CccceeEEEEEEEEC-------------
Confidence 45689999 999999999999999643211000 0 001111111122222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh---cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~---~~~p~ivviNK~D~~~ 156 (584)
+....+.||||||+.+|.......++.+|++|+|+|+.++........|.. +.. .++|+++|+||+|+..
T Consensus 54 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 54 -DKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp -TEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred -CeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 226789999999999999999999999999999999988655444444433 222 4788899999999963
No 77
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.47 E-value=3.3e-13 Score=128.95 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=80.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-. .+....++.+.....+.+.
T Consensus 27 ~~~~ki~v---vG~~~vGKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~------------- 74 (201)
T 2hup_A 27 DFLFKLVL---VGDASVGKTCVVQRFKTGAFS----------------ERQGSTIGVDFTMKTLEIQ------------- 74 (201)
T ss_dssp CEEEEEEE---EECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEET-------------
T ss_pred ccceEEEE---ECcCCCCHHHHHHHHhhCCCC----------------CCCCCCcceEEEEEEEEEC-------------
Confidence 45689999 999999999999999643210 0001111222222233333
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~~ 156 (584)
+....++||||||+.+|.......++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 75 -~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 75 -GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp -TEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred -CEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 2247899999999999999999999999999999999876544443333 23222 4678899999999973
No 78
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.47 E-value=2.5e-13 Score=128.68 Aligned_cols=113 Identities=19% Similarity=0.111 Sum_probs=81.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|++|+|||||+++|....-.. ...|+......+.+.
T Consensus 21 ~~~~ki~~---vG~~~vGKSsli~~l~~~~~~~-------------------~~~t~~~~~~~~~~~------------- 65 (190)
T 1m2o_B 21 NKHGKLLF---LGLDNAGKTTLLHMLKNDRLAT-------------------LQPTWHPTSEELAIG------------- 65 (190)
T ss_dssp ---CEEEE---EESTTSSHHHHHHHHHHSCCCC-------------------CCCCCSCEEEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCCCCc-------------------cccCCCCCeEEEEEC-------------
Confidence 45679999 9999999999999997532110 012333333445555
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHH-HHHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~-l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+.+|.......++.+|++++|+|++++........ +..+.+ .++|+++|+||+|+..
T Consensus 66 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 66 ---NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp ---TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 6899999999999988877788899999999999998755443333 333332 4788999999999973
No 79
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.47 E-value=1.3e-13 Score=126.82 Aligned_cols=116 Identities=19% Similarity=0.149 Sum_probs=79.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|+...-.. +....++.+.....+.+.
T Consensus 2 ~~~~i~v---~G~~~~GKssli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~-------------- 48 (170)
T 1g16_A 2 SIMKILL---IGDSGVGKSCLLVRFVEDKFNP----------------SFITTIGIDFKIKTVDIN-------------- 48 (170)
T ss_dssp CEEEEEE---EESTTSSHHHHHHHHHHCCCCC-----------------------CCEEEEEEESS--------------
T ss_pred CceEEEE---ECcCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEEC--------------
Confidence 4579999 9999999999999997532110 001112222222233332
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~ 155 (584)
+....+.+|||||+.+|.......++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 49 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 49 GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 2357899999999999988888999999999999999876544443333 22222 377889999999984
No 80
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.47 E-value=4.4e-14 Score=151.71 Aligned_cols=113 Identities=27% Similarity=0.297 Sum_probs=80.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+|++ +|++|+|||||+++|+...-.+. +...|+|.+.....+.|.
T Consensus 4 ~~V~i---vG~~nvGKStL~n~l~~~~~~~v---------------~~~~g~T~d~~~~~~~~~---------------- 49 (436)
T 2hjg_A 4 PVVAI---VGRPNVGKSTIFNRIAGERISIV---------------EDTPGVTRDRIYSSAEWL---------------- 49 (436)
T ss_dssp CEEEE---ECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTC----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCCceee---------------cCCCCCccceEEEEEEEC----------------
Confidence 57899 99999999999999954322111 223356766665566665
Q ss_pred ceeEEEeCCCCCC--------CchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~--------df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+.+|||||+. .|...+..+++.||++|+|+|+.+|.......+++.+.+.++|+++++||+|+.
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 6789999999986 466677889999999999999999999888887777667789999999999987
No 81
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.47 E-value=2.4e-13 Score=128.20 Aligned_cols=118 Identities=18% Similarity=0.150 Sum_probs=81.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-.... . ...+.+.... .+.+.
T Consensus 20 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~--~------------~t~~~~~~~~--~~~~~------------- 67 (189)
T 2gf9_A 20 DYMFKLLL---IGNSSVGKTSFLFRYADDSFTPAF--V------------STVGIDFKVK--TVYRH------------- 67 (189)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHHSCCCCSC--C------------CCCCCEEEEE--EEEET-------------
T ss_pred CceeEEEE---ECCCCCCHHHHHHHHHcCCCCCCc--C------------CceeEEEEEE--EEEEC-------------
Confidence 35689999 999999999999999754321100 0 0011222211 22222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~~ 156 (584)
+....+++|||||+.+|.......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 68 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 68 -DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp -TEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred -CeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 2267899999999999988888999999999999999876544444334 33333 3788999999999963
No 82
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.46 E-value=3.9e-13 Score=124.78 Aligned_cols=117 Identities=19% Similarity=0.201 Sum_probs=81.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|+.|+|||||+++|+...-.... ...++++.....+.+.
T Consensus 13 ~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~-------------- 59 (179)
T 2y8e_A 13 RKFKLVF---LGEQSVGKTSLITRFMYDSFDNTY----------------QATIGIDFLSKTMYLE-------------- 59 (179)
T ss_dssp EEEEEEE---EESTTSSHHHHHHHHHHSCCCSSC----------------CCCCSEEEEEEEEEET--------------
T ss_pred cceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC----------------CCceeeEEEEEEEEEC--------------
Confidence 5589999 999999999999999753221100 1112233222333333
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~---~~~~p~ivviNK~D~~~ 156 (584)
+....+.+|||||+.+|.......++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 60 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 2257899999999999999999999999999999999875443333333 2222 24788899999999873
No 83
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.46 E-value=7.3e-13 Score=121.44 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=78.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~~ 85 (584)
+.++|++ +|+.|+|||||+++|+...- ..... .|+.... ..+.+
T Consensus 2 ~~~ki~v---~G~~~~GKssli~~l~~~~~--~~~~~----------------~t~~~~~~~~~~~-------------- 46 (167)
T 1c1y_A 2 REYKLVV---LGSGGVGKSALTVQFVQGIF--VEKYD----------------PTIEDSYRKQVEV-------------- 46 (167)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHCCC--CCSCC----------------CCSEEEEEEEEES--------------
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHHcCCC--CCCCC----------------CCccceEEEEEEE--------------
Confidence 4689999 99999999999999975321 11000 1111111 11111
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~----~~~~p~ivviNK~D~~~ 156 (584)
++..+.+++|||||+.+|.......++.+|++++|+|+.+.........| ..+. ..++|+++++||+|+..
T Consensus 47 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 47 DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 23367899999999999999999999999999999999875433332222 2222 24789999999999973
No 84
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.46 E-value=2.2e-13 Score=129.10 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=53.5
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh-cCCceEEEEecCcc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-ERIRPVLTVNKMDR 154 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~-~~~p~ivviNK~D~ 154 (584)
...+.||||||+.+|.......++.+|++|+|+|+.++...+....| ..+.. .+.|+++|+||+|.
T Consensus 92 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 38899999999999999999999999999999999987655554444 23322 46788999999993
No 85
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.46 E-value=1.8e-13 Score=125.70 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=80.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|+.|+|||||+++|+...-. .. .. ..++.+.....+.+.
T Consensus 4 ~~~~i~v---~G~~~~GKssl~~~l~~~~~~--~~-~~-------------~t~~~~~~~~~~~~~-------------- 50 (168)
T 1z2a_A 4 VAIKMVV---VGNGAVGKSSMIQRYCKGIFT--KD-YK-------------KTIGVDFLERQIQVN-------------- 50 (168)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHCCCC--CC-SS-------------CCCSSSEEEEEEEET--------------
T ss_pred eeEEEEE---ECcCCCCHHHHHHHHHcCCCC--CC-CC-------------CceEEEEEEEEEEEC--------------
Confidence 5689999 999999999999999753211 00 00 011122222222222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh--cCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG--ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~--~~~p~ivviNK~D~~~ 156 (584)
+....+.+|||||+.+|.......++.+|++++|+|+.+.........|.. +.. .+.|+++|+||+|+..
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 51 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp TEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred CEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 225789999999999998888899999999999999987654443333322 222 4789999999999873
No 86
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.46 E-value=2.2e-13 Score=127.74 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=76.8
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|+.|+|||||+++|+..... ....+ .+.......+.+.
T Consensus 3 ~~~ki~v---~G~~~~GKSsli~~l~~~~~~--~~~~~---------------t~~~~~~~~~~~~-------------- 48 (189)
T 4dsu_A 3 TEYKLVV---VGADGVGKSALTIQLIQNHFV--DEYDP---------------TIEDSYRKQVVID-------------- 48 (189)
T ss_dssp EEEEEEE---ECCTTSSHHHHHHHHHHSSCC--CCCCT---------------TCCEEEEEEEEET--------------
T ss_pred cEEEEEE---ECCCCCCHHHHHHHHHhCCCC--CCCCC---------------CchheEEEEEEEC--------------
Confidence 5689999 999999999999999754321 11111 1111111112222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHH----hcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL----GERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~----~~~~p~ivviNK~D~~ 155 (584)
+..+.+++|||||+.+|.......++.+|++++|+|+.+.........|. .+. ..++|+++|+||+|+.
T Consensus 49 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 49 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp TEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred CcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 22567889999999999999999999999999999998764444433332 222 2378899999999997
No 87
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.46 E-value=8.1e-13 Score=123.53 Aligned_cols=117 Identities=22% Similarity=0.225 Sum_probs=79.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...- ...... .+.......+.+.
T Consensus 16 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~--~~~~~~---------------t~~~~~~~~~~~~------------- 62 (187)
T 2a9k_A 16 LALHKVIM---VGSGGVGKSALTLQFMYDEF--VEDYEP---------------TKADSYRKKVVLD------------- 62 (187)
T ss_dssp -CEEEEEE---ECSTTSSHHHHHHHHHHSCC--CCSCCT---------------TCCEEEEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHhhCCC--CCcCCC---------------ccceEEEEEEEEC-------------
Confidence 46689999 99999999999999975431 111010 0111111112222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~----~~~~p~ivviNK~D~~~ 156 (584)
+..+.+.||||||+.+|.......++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 63 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 63 -GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp -TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred -CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 2256899999999999999999999999999999999875443333222 2222 23789999999999963
No 88
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.46 E-value=2e-13 Score=125.62 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=81.5
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...-.... . ...|.+... ..+.+.
T Consensus 4 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~--~------------~~~~~~~~~--~~~~~~------------- 51 (170)
T 1z0j_A 4 LRELKVCL---LGDTGVGKSSIMWRFVEDSFDPNI--N------------PTIGASFMT--KTVQYQ------------- 51 (170)
T ss_dssp EEEEEEEE---ECCTTSSHHHHHHHHHHSCCCTTC--C------------CCCSEEEEE--EEEEET-------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHHcCCCCCCC--C------------CceeEEEEE--EEEEEC-------------
Confidence 35689999 999999999999999754311000 0 001112211 122222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~---~~~~p~ivviNK~D~~~ 156 (584)
.....+.+|||||+.+|.......++.+|++++|+|+.+.........| ..+. ...+|+++|+||+|+..
T Consensus 52 -~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 52 -NELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp -TEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred -CeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 2257899999999999999889999999999999999887655554444 3332 23567789999999973
No 89
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.46 E-value=2.4e-13 Score=126.49 Aligned_cols=121 Identities=20% Similarity=0.161 Sum_probs=82.3
Q ss_pred CCccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhh
Q 007929 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALK 79 (584)
Q Consensus 1 ~~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~ 79 (584)
|+....+.++|++ +|+.|+|||||+++|+...-. .... .|+.... ..+.+.
T Consensus 2 m~~~~~~~~~i~v---~G~~~~GKssli~~l~~~~~~--~~~~----------------~t~~~~~~~~~~~~------- 53 (181)
T 2fn4_A 2 MDPPPSETHKLVV---VGGGGVGKSALTIQFIQSYFV--SDYD----------------PTIEDSYTKICSVD------- 53 (181)
T ss_dssp --CCSSCEEEEEE---EECTTSSHHHHHHHHHHSSCC--SSCC----------------TTCCEEEEEEEEET-------
T ss_pred CCCCCCCceEEEE---ECCCCCCHHHHHHHHHhCcCc--cccC----------------CCcCceEEEEEEEC-------
Confidence 5555677899999 999999999999999764211 1001 0111111 122222
Q ss_pred cccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHH----HhcCCceEEEEecCcc
Q 007929 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDR 154 (584)
Q Consensus 80 ~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~----~~~~~p~ivviNK~D~ 154 (584)
+....+++|||||+.+|.......++.+|++++|+|+.+.........| ..+ ...++|+++|+||+|+
T Consensus 54 -------~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 54 -------GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp -------TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred -------CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 2247899999999999988888999999999999999875433332222 222 2357899999999999
Q ss_pred cc
Q 007929 155 CF 156 (584)
Q Consensus 155 ~~ 156 (584)
..
T Consensus 127 ~~ 128 (181)
T 2fn4_A 127 ES 128 (181)
T ss_dssp GG
T ss_pred cc
Confidence 73
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.45 E-value=2.2e-13 Score=128.60 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=81.5
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+........ ...|+......+.+.
T Consensus 19 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~------------- 65 (190)
T 2h57_A 19 SKEVHVLC---LGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKSS------------- 65 (190)
T ss_dssp --CEEEEE---EECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEECS-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEEC-------------
Confidence 46789999 999999999999999543211110 112333333344444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh------cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG------ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~------~~~p~ivviNK~D~~~ 156 (584)
+..+.+|||||+.+|.......++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 66 ---~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 66 ---SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp ---SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 68999999999999998888899999999999999876433332 22333333 4788999999999973
No 91
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=129.38 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=81.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+......... ..++.......+...
T Consensus 23 ~~~~ki~v---~G~~~~GKSsLi~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~------------- 70 (193)
T 2oil_A 23 NFVFKVVL---IGESGVGKTNLLSRFTRNEFSHDSR----------------TTIGVEFSTRTVMLG------------- 70 (193)
T ss_dssp SEEEEEEE---ESSTTSSHHHHHHHHHHSCCCSSCC----------------CCSSEEEEEEEEEET-------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHhcCCCCCCCC----------------CccceeEEEEEEEEC-------------
Confidence 46789999 9999999999999997643221100 001111111112211
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~~ 156 (584)
.....+.||||||+.+|.......++.+|++|+|+|+...........| ..+.. .++|+++|+||+|+..
T Consensus 71 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 71 -TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp -TEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred -CEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 2268899999999999999999999999999999999876554433333 33332 3678899999999973
No 92
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.45 E-value=1.9e-13 Score=130.38 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=77.5
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|++|+|||||+++|.... ... ...|+......+.+.
T Consensus 23 ~~~~ki~l---vG~~~vGKSsLi~~l~~~~------------~~~-------~~~t~~~~~~~~~~~------------- 67 (198)
T 1f6b_A 23 KKTGKLVF---LGLDNAGKTTLLHMLKDDR------------LGQ-------HVPTLHPTSEELTIA------------- 67 (198)
T ss_dssp TCCEEEEE---EEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEET-------------
T ss_pred CCCcEEEE---ECCCCCCHHHHHHHHhcCC------------CCc-------cCCCCCceeEEEEEC-------------
Confidence 45679999 9999999999999994211 000 112333333445555
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+.+|.......++.+|++++|+|+++.........| ..+.+ .++|+++|+||+|+..
T Consensus 68 ---~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 68 ---GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp ---TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 68999999999999888778889999999999999886544433332 33332 4788999999999973
No 93
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.45 E-value=3.6e-13 Score=144.66 Aligned_cols=115 Identities=19% Similarity=0.273 Sum_probs=84.8
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+.....+....+ |+|.+.....+.+.
T Consensus 179 ~~~kvai---vG~~gvGKSTLln~l~g~~~~~v~~~~---------------gtT~d~~~~~i~~~-------------- 226 (439)
T 1mky_A 179 DAIKVAI---VGRPNVGKSTLFNAILNKERALVSPIP---------------GTTRDPVDDEVFID-------------- 226 (439)
T ss_dssp SCEEEEE---ECSTTSSHHHHHHHHHTSTTEEECCCC---------------------CCEEEEET--------------
T ss_pred cCceEEE---ECCCCCCHHHHHHHHhCCcccccCCCC---------------CCcCCceEEEEEEC--------------
Confidence 4579999 999999999999999765443332222 35555555566666
Q ss_pred CCceeEEEeCCCCCCCchH------------HHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcc
Q 007929 87 GNEYLINLIDSPGHVDFSS------------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~------------e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~ 154 (584)
+..+.+|||||...+.. .+..+++.+|++++|+|+..+...+...++..+...++|+++++||+|+
T Consensus 227 --g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl 304 (439)
T 1mky_A 227 --GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDL 304 (439)
T ss_dssp --TEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred --CEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccC
Confidence 77899999999854332 1356788999999999999999888887777777789999999999998
Q ss_pred c
Q 007929 155 C 155 (584)
Q Consensus 155 ~ 155 (584)
.
T Consensus 305 ~ 305 (439)
T 1mky_A 305 V 305 (439)
T ss_dssp S
T ss_pred C
Confidence 7
No 94
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.45 E-value=8.1e-13 Score=125.57 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=78.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|..|+|||||+++|..... .. ...+...........+.
T Consensus 18 ~~~~ki~~---vG~~~vGKTsLi~~l~~~~~--~~---------------~~~~~~~~~~~~~~~~~------------- 64 (196)
T 3llu_A 18 GSKPRILL---MGLRRSGKSSIQKVVFHKMS--PN---------------ETLFLESTNKIYKDDIS------------- 64 (196)
T ss_dssp --CCEEEE---EESTTSSHHHHHHHHHSCCC--GG---------------GGGGCCCCCSCEEEEEC-------------
T ss_pred CcceEEEE---ECCCCCCHHHHHHHHHhcCC--Cc---------------ceeeeccccceeeeecc-------------
Confidence 46789999 99999999999998743211 00 11112222222232222
Q ss_pred CCCceeEEEeCCCCCCCchHHH---HHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH-----hcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEV---TAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~---~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~-----~~~~p~ivviNK~D~~~ 156 (584)
++....+++|||||+.+|.... ...++.+|++|+|+|+++........+...+. ..++|+++|+||+|+..
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 65 NSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp CTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred CCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 1236889999999999998877 78999999999999999873222222222221 23788999999999873
No 95
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.45 E-value=3.1e-13 Score=127.74 Aligned_cols=117 Identities=20% Similarity=0.132 Sum_probs=81.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+........ ...++.+.....+.+.
T Consensus 19 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~------------- 66 (191)
T 2a5j_A 19 SYLFKYII---IGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVNID------------- 66 (191)
T ss_dssp CEEEEEEE---ESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEEEEEEET-------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC-------------
Confidence 46789999 999999999999999754221100 0011222222223222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHHh---cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~~---~~~p~ivviNK~D~~ 155 (584)
+....++||||||+.+|.......++.+|++|+|+|+++....+....|. .+.. .++|+++|+||+|+.
T Consensus 67 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 67 -GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp -TEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred -CEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 22578999999999999888889999999999999998765444443332 3222 378889999999996
No 96
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.45 E-value=4.4e-13 Score=126.40 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=79.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|+........... +.|.... +...
T Consensus 22 ~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~~~~---------------~~t~~~~---~~~~-------------- 66 (195)
T 3pqc_A 22 LKGEVAF---VGRSNVGKSSLLNALFNRKIAFVSKTP---------------GKTRSIN---FYLV-------------- 66 (195)
T ss_dssp TTCEEEE---EEBTTSSHHHHHHHHHTSCCSCCCSSC---------------CCCCCEE---EEEE--------------
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHcCccccccCCC---------------CCccCeE---EEEE--------------
Confidence 4578999 999999999999999765421111111 2232221 1222
Q ss_pred CCceeEEEeCCCCC----------CCchHHHHHHhh---hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCc
Q 007929 87 GNEYLINLIDSPGH----------VDFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (584)
Q Consensus 87 ~~~~~inliDTPG~----------~df~~e~~~~l~---~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D 153 (584)
+..+.+|||||. ..|.......++ .+|++++|+|+..+.......++..+...++|+++|+||+|
T Consensus 67 --~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 144 (195)
T 3pqc_A 67 --NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMD 144 (195)
T ss_dssp --TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred --CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChh
Confidence 456889999993 334443444444 45999999999999888888887777777999999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 145 l~~ 147 (195)
T 3pqc_A 145 KVK 147 (195)
T ss_dssp GSC
T ss_pred cCC
Confidence 973
No 97
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=3e-13 Score=124.58 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=77.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceE-EEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~-~~~~~~~~~~~~~~~~~~ 85 (584)
..++|++ +|+.|+|||||+++|+...-. .... .|+..... .....
T Consensus 2 ~~~~i~v---~G~~~~GKssli~~l~~~~~~--~~~~----------------~t~~~~~~~~~~~~------------- 47 (172)
T 2erx_A 2 NDYRVAV---FGAGGVGKSSLVLRFVKGTFR--ESYI----------------PTVEDTYRQVISCD------------- 47 (172)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHTCCCC--SSCC----------------CCSCEEEEEEEEET-------------
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHcCCCC--CCCC----------------CCccccEEEEEEEC-------------
Confidence 4689999 999999999999999743211 0000 01111110 11111
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh-----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG-----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~-----~~~p~ivviNK~D~~~ 156 (584)
...+.+.+|||||+.+|.......++.+|++++|+|+.+....... ..+..+.+ .++|+++|+||+|+..
T Consensus 48 -~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 48 -KSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp -TEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred -CEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 2257899999999999999999999999999999999875433322 23333332 3689999999999863
No 98
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.45 E-value=3.4e-13 Score=127.54 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=78.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|+...... . .....+.|...... .+
T Consensus 22 ~~~~i~v---~G~~~~GKSsli~~l~~~~~~~-~-------------~~~~~~~t~~~~~~--~~--------------- 67 (195)
T 1svi_A 22 GLPEIAL---AGRSNVGKSSFINSLINRKNLA-R-------------TSSKPGKTQTLNFY--II--------------- 67 (195)
T ss_dssp CCCEEEE---EEBTTSSHHHHHHHHHTC---------------------------CCEEEE--EE---------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCCcc-c-------------cCCCCCceeeEEEE--EE---------------
Confidence 5689999 9999999999999997432100 0 00111233332221 11
Q ss_pred CCceeEEEeCCCCC----------CCchHHHHHHhhhc---CeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCc
Q 007929 87 GNEYLINLIDSPGH----------VDFSSEVTAALRIT---DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (584)
Q Consensus 87 ~~~~~inliDTPG~----------~df~~e~~~~l~~~---D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D 153 (584)
+..+++|||||+ ..|.......++.+ |++++|+|+..+.......+++.+...++|+++|+||+|
T Consensus 68 --~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 145 (195)
T 1svi_A 68 --NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKAD 145 (195)
T ss_dssp --TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred --CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 236999999994 44544455556655 999999999999888887777777778899999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 146 l~~ 148 (195)
T 1svi_A 146 KIP 148 (195)
T ss_dssp GSC
T ss_pred cCC
Confidence 973
No 99
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.44 E-value=2.1e-13 Score=137.24 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=82.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|..... . +. ...|+|++.....+.+.
T Consensus 2 ~~~~I~l---vG~~n~GKSTLin~l~g~~~-~---------v~------~~~g~t~~~~~~~~~~~-------------- 48 (274)
T 3i8s_A 2 KKLTIGL---IGNPNSGKTTLFNQLTGSRQ-R---------VG------NWAGVTVERKEGQFSTT-------------- 48 (274)
T ss_dssp CCEEEEE---EECTTSSHHHHHHHHHTTCE-E---------EE------ECTTSSSEEEEEEEECS--------------
T ss_pred CccEEEE---ECCCCCCHHHHHHHHhCCCc-c---------cC------CCCCeeEEEEEEEEEeC--------------
Confidence 3578999 99999999999999964321 1 11 11256777666666665
Q ss_pred CCceeEEEeCCCCCCCchH---------HHH---HHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcc
Q 007929 87 GNEYLINLIDSPGHVDFSS---------EVT---AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~---------e~~---~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~ 154 (584)
+..+++|||||+.+|.. .+. ...+.+|++|+|+|++. ......++.++...++|+++|+||+|+
T Consensus 49 --~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl 124 (274)
T 3i8s_A 49 --DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDI 124 (274)
T ss_dssp --SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHH
T ss_pred --CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccc
Confidence 67899999999998772 111 12368999999999987 233444556666779999999999998
Q ss_pred c
Q 007929 155 C 155 (584)
Q Consensus 155 ~ 155 (584)
.
T Consensus 125 ~ 125 (274)
T 3i8s_A 125 A 125 (274)
T ss_dssp H
T ss_pred h
Confidence 6
No 100
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.44 E-value=3.2e-13 Score=126.54 Aligned_cols=113 Identities=19% Similarity=0.114 Sum_probs=82.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...- .. + ..|+......+.+.
T Consensus 19 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~--~~-------~----------~~t~~~~~~~~~~~------------- 63 (181)
T 2h17_A 19 SQEHKVII---VGLDNAGKTTILYQFSMNEV--VH-------T----------SPTIGSNVEEIVIN------------- 63 (181)
T ss_dssp --CEEEEE---EEETTSSHHHHHHHHHTTSC--EE-------E----------ECCSSSSCEEEEET-------------
T ss_pred CceeEEEE---ECCCCCCHHHHHHHHhcCCC--Cc-------c----------CCcCceeeEEEEEC-------------
Confidence 46789999 99999999999999975321 00 0 11222222344444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+.+|||||+.+|.......++.+|++|+|+|+.+....+.. ..+..+.+ .++|+++|+||+|+..
T Consensus 64 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 64 ---NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp ---TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 68999999999999988888899999999999999987544433 33344443 5788899999999973
No 101
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.44 E-value=6e-14 Score=151.49 Aligned_cols=116 Identities=26% Similarity=0.292 Sum_probs=85.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
....+|+| +|++|+|||||+++|+.....+ .+...|+|.+.....+.|.
T Consensus 21 m~~~~V~l---vG~~nvGKSTL~n~l~~~~~~~---------------v~~~~g~t~~~~~~~~~~~------------- 69 (456)
T 4dcu_A 21 MGKPVVAI---VGRPNVGKSTIFNRIAGERISI---------------VEDTPGVTRDRIYSSAEWL------------- 69 (456)
T ss_dssp --CCEEEE---ECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTTC-------------
T ss_pred cCCCEEEE---ECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCcceeEEEEEEEEC-------------
Confidence 34568999 9999999999999995322111 1223466776666666665
Q ss_pred CCCceeEEEeCCCC--------CCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPG--------HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG--------~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+++||||| +..|...+..+++.+|++|+|+|+.+|.......+++.+.+.++|+++|+||+|+.
T Consensus 70 ---~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 70 ---NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp ---SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred ---CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 78899999999 55677778889999999999999999999999998888777899999999999986
No 102
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.44 E-value=3.6e-13 Score=127.70 Aligned_cols=113 Identities=21% Similarity=0.162 Sum_probs=77.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+... . .+. ..|+......+.+.
T Consensus 27 ~~~~ki~v---~G~~~vGKSsLi~~l~~~~--~----------~~~-------~~t~~~~~~~~~~~------------- 71 (192)
T 2b6h_A 27 KKQMRILM---VGLDAAGKTTILYKLKLGE--I----------VTT-------IPTIGFNVETVEYK------------- 71 (192)
T ss_dssp TSCEEEEE---EESTTSSHHHHHHHHCSSC--C----------EEE-------EEETTEEEEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHHhCC--c----------ccc-------CCcCceeEEEEEEC-------------
Confidence 46789999 9999999999999994211 0 000 01333223334444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+.+|.......++.+|++|+|+|+.+....... ..+..+.+ .++|+++|+||+|+..
T Consensus 72 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 72 ---NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp ---TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 78999999999999988888999999999999999877544433 23333333 3788999999999973
No 103
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.44 E-value=5e-13 Score=122.01 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=78.2
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceec-ceEEEEeecchhhhhcccccCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS-TGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
.++|++ +|+.|+|||||+++|+..... ..... |+.. ....+.+.
T Consensus 3 ~~~i~v---~G~~~~GKssl~~~l~~~~~~--~~~~~----------------~~~~~~~~~~~~~-------------- 47 (166)
T 2ce2_X 3 EYKLVV---VGAGGVGKSALTIQLIQNHFV--DECDP----------------TIEDSYRKQVVID-------------- 47 (166)
T ss_dssp EEEEEE---EESTTSSHHHHHHHHHHSSCC--SCCCT----------------TCCEEEEEEEEET--------------
T ss_pred eeEEEE---ECCCCCCHHHHHHHHHhCcCc--cccCC----------------ccceEEEEEEEEC--------------
Confidence 578999 999999999999999754211 10000 1111 01112222
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+.+.+|||||+.+|.......++.+|++++|+|+.+.........| ..+.. .++|+++++||+|+..
T Consensus 48 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 48 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp TEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred CEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 2257799999999999999899999999999999999875443333333 22222 2789999999999873
No 104
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=2.1e-13 Score=128.87 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=82.9
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
....++|++ +|+.|+|||||+++|+...-..... .+ .+++.... .+.+.
T Consensus 20 ~~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~~----~t----------~~~~~~~~--~~~~~------------ 68 (191)
T 3dz8_A 20 FDYMFKLLI---IGNSSVGKTSFLFRYADDTFTPAFV----ST----------VGIDFKVK--TVYRH------------ 68 (191)
T ss_dssp EEECEEEEE---EESTTSSHHHHHHHHHHHTTCCCEE----EE----------ETTTEEEE--EEEET------------
T ss_pred cCeeeEEEE---ECCCCcCHHHHHHHHhcCCCCcccC----CC----------eeeEEEEE--EEEEC------------
Confidence 346789999 9999999999999997643211000 00 01222222 22222
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh---cCCceEEEEecCcccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~---~~~p~ivviNK~D~~~ 156 (584)
+....+.||||||+.+|.......++.+|++|+|+|+.+.........|.. +.. .++|+++|+||+|+..
T Consensus 69 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 69 --EKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp --TTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred --CEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 237889999999999999999999999999999999987644443333433 222 4788899999999863
No 105
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.44 E-value=6.4e-13 Score=132.74 Aligned_cols=115 Identities=19% Similarity=0.193 Sum_probs=78.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|++......... .+.|.......+.+.
T Consensus 35 ~~~~I~l---vG~~g~GKSSLin~l~~~~~~~~~~~---------------~~~t~~~~~~~~~~~-------------- 82 (262)
T 3def_A 35 NSMTVLV---LGKGGVGKSSTVNSLIGEQVVRVSPF---------------QAEGLRPVMVSRTMG-------------- 82 (262)
T ss_dssp CEEEEEE---EECTTSSHHHHHHHHHTSCCSCCCSS---------------CC-CCCCEEEEEEET--------------
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHhCCCCcccCCC---------------CCcceeeEEEEEEEC--------------
Confidence 5689999 99999999999999986543221111 234555555566666
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhh---------hcCeEEEEEeCCC-CCchhHHHHHHHHHhc---C--CceEEEEec
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALR---------ITDGALVVVDCIE-GVCVQTETVLRQALGE---R--IRPVLTVNK 151 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~---------~~D~ailvvda~~-g~~~~t~~~l~~~~~~---~--~p~ivviNK 151 (584)
+..++||||||+.+|.......++ .+|++++|+|... .........++.+... + .|+++++||
T Consensus 83 --~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 83 --GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp --TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred --CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeC
Confidence 789999999999887544333332 7899999987754 3333334444444332 1 378899999
Q ss_pred Cccc
Q 007929 152 MDRC 155 (584)
Q Consensus 152 ~D~~ 155 (584)
+|+.
T Consensus 161 ~Dl~ 164 (262)
T 3def_A 161 AQFS 164 (262)
T ss_dssp TTCC
T ss_pred cccC
Confidence 9985
No 106
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.44 E-value=3e-13 Score=125.21 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=71.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+......... ..|.+.... .+.+.
T Consensus 3 ~~~ki~i---~G~~~vGKSsl~~~l~~~~~~~~~~---------------~~~~~~~~~--~~~~~-------------- 48 (175)
T 2nzj_A 3 ALYRVVL---LGDPGVGKTSLASLFAGKQERDLHE---------------QLGEDVYER--TLTVD-------------- 48 (175)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHCC-----CC---------------CSSSSEEEE--EEEET--------------
T ss_pred eEEEEEE---ECCCCccHHHHHHHHhcCCCccccC---------------ccccceeEE--EEEEC--------------
Confidence 4589999 9999999999999996432111100 112222222 22222
Q ss_pred CCceeEEEeCCCCCCC--chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHhc----CCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVD--FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE----RIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~d--f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~~----~~p~ivviNK~D~~~ 156 (584)
+....+.+|||||+.. +.......++.+|++++|+|+++.........| ..+.+. ++|+++|+||+|+..
T Consensus 49 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 49 GEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp TEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred CEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 2256899999999988 444455667889999999999875444433333 333332 789999999999973
No 107
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.44 E-value=2.8e-13 Score=127.20 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=82.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+... ... . ..|+......+.+.
T Consensus 16 ~~~~~i~v---~G~~~~GKssl~~~l~~~~--~~~----------~-------~~t~~~~~~~~~~~------------- 60 (186)
T 1ksh_A 16 ERELRLLM---LGLDNAGKTTILKKFNGED--VDT----------I-------SPTLGFNIKTLEHR------------- 60 (186)
T ss_dssp -CCEEEEE---ECSTTSSHHHHHHHHTTCC--CSS----------C-------CCCSSEEEEEEEET-------------
T ss_pred CCeeEEEE---ECCCCCCHHHHHHHHhcCC--CCc----------c-------cccCccceEEEEEC-------------
Confidence 46789999 9999999999999996432 100 0 01222223334444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+.+|.......++.+|++++|+|+++....... ..+..+.+ .++|+++|+||+|+..
T Consensus 61 ---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 61 ---GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp ---TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 78999999999999888888889999999999999887544433 23344333 3688999999999974
No 108
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.44 E-value=2.3e-13 Score=125.35 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=75.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-.. . . ...++.......+.+.
T Consensus 4 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~-~-~--------------~~t~~~~~~~~~~~~~------------- 51 (170)
T 1z08_A 4 AYSFKVVL---LGEGCVGKTSLVLRYCENKFND-K-H--------------ITTLGASFLTKKLNIG------------- 51 (170)
T ss_dssp CEEEEEEE---ECCTTSCHHHHHHHHHHCCCCS-S-C--------------CCCCSCEEEEEEEESS-------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHHcCCCCc-C-C--------------CCccceEEEEEEEEEC-------------
Confidence 45689999 9999999999999997542110 0 0 0011122111222222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HH---HhcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA---LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~---~~~~~p~ivviNK~D~~~ 156 (584)
+....+.+|||||+.+|.......++.+|++++|+|+.+....+....|. .+ ...++|+++|+||+|+..
T Consensus 52 -~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 52 -GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp -SCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred -CEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 33578999999999999888888889999999999998865444444332 22 235788899999999973
No 109
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.43 E-value=1.4e-12 Score=125.86 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=83.4
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
....++|++ +|+.|+|||||+++|+...-........ .|+.. .+.
T Consensus 9 ~~~~~~i~~---~G~~g~GKTsl~~~l~~~~~~~~~~~~~---------------~~~~~-----~~~------------ 53 (218)
T 1nrj_B 9 KSYQPSIII---AGPQNSGKTSLLTLLTTDSVRPTVVSQE---------------PLSAA-----DYD------------ 53 (218)
T ss_dssp -CCCCEEEE---ECSTTSSHHHHHHHHHHSSCCCBCCCSS---------------CEEET-----TGG------------
T ss_pred cCCCCEEEE---ECCCCCCHHHHHHHHhcCCCCCeeeecC---------------ceEEE-----Eee------------
Confidence 346789999 9999999999999997543211000000 01100 012
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhh----cCeEEEEEeCC-C--CCchhHHHHHHHHHh-------cCCceEEEEe
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI-E--GVCVQTETVLRQALG-------ERIRPVLTVN 150 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~----~D~ailvvda~-~--g~~~~t~~~l~~~~~-------~~~p~ivviN 150 (584)
...+++|||||+.+|.......++. +|++|+|+|+. . ....... .+..+.. .++|+++|+|
T Consensus 54 ----~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 54 ----GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACN 128 (218)
T ss_dssp ----GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred ----CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEE
Confidence 5789999999999998888888877 99999999998 2 2222222 2222221 4789999999
Q ss_pred cCccccccccCCHHHHHHHHHHHHHHH
Q 007929 151 KMDRCFLELQVDGEEAYQTFQKVIENA 177 (584)
Q Consensus 151 K~D~~~~~~~~~~~~~~~~~~~~l~~v 177 (584)
|+|+.. ....+.+...+++.+..+
T Consensus 129 K~Dl~~---~~~~~~~~~~l~~~~~~~ 152 (218)
T 1nrj_B 129 KSELFT---ARPPSKIKDALESEIQKV 152 (218)
T ss_dssp CTTSTT---CCCHHHHHHHHHHHHHHH
T ss_pred chHhcc---cCCHHHHHHHHHHHHHHH
Confidence 999974 233444444444444443
No 110
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.43 E-value=1.4e-12 Score=124.16 Aligned_cols=117 Identities=22% Similarity=0.222 Sum_probs=80.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...- .....+ .+.......+.+.
T Consensus 12 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~--~~~~~~---------------t~~~~~~~~~~~~------------- 58 (206)
T 2bov_A 12 LALHKVIM---VGSGGVGKSALTLQFMYDEF--VEDYEP---------------TKADSYRKKVVLD------------- 58 (206)
T ss_dssp CCEEEEEE---ECSTTSSHHHHHHHHHHSCC--CTTCCT---------------TCCEEEEEEEEET-------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHHhCCC--CCCCCC---------------ccceEEEEEEEEC-------------
Confidence 35689999 99999999999999975431 111011 0111111122222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+.+.||||||+.+|.......++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 59 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 59 -GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133 (206)
T ss_dssp -TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG
T ss_pred -CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc
Confidence 2256899999999999999999999999999999999876444333333 22222 3789999999999973
No 111
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.43 E-value=3.5e-13 Score=129.31 Aligned_cols=117 Identities=20% Similarity=0.141 Sum_probs=80.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|++|+|||||+++|+...-.. . ....++.+.....+.+.
T Consensus 18 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~-~---------------~~~~~~~~~~~~~~~~~------------- 65 (213)
T 3cph_A 18 DSIMKILL---IGDSGVGKSCLLVRFVEDKFNP-S---------------FITTIGIDFKIKTVDIN------------- 65 (213)
T ss_dssp --CEEEEE---ECSTTSSHHHHHHHHHHCCCCC-S---------------SSCCCSCCEEEEEEEET-------------
T ss_pred CcceEEEE---ECCCCCCHHHHHHHHHhCCCCc-c---------------cCCcccceEEEEEEEEC-------------
Confidence 35689999 9999999999999997532110 0 01112233333334333
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh---cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~---~~~p~ivviNK~D~~ 155 (584)
+....+.||||||+.+|.......++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+.
T Consensus 66 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 66 -GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp -TEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred -CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 2247899999999999988888999999999999999876544443333 22222 368899999999984
No 112
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.43 E-value=9.7e-13 Score=134.56 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=85.2
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|.+|+|||||+++|+....... ....+.|+......+.+.
T Consensus 3 ~~KI~l---vG~~~vGKSSLi~~l~~~~~~~~---------------~~~~~~Ti~~~~~~~~~~--------------- 49 (307)
T 3r7w_A 3 GSKLLL---MGRSGSGKSSMRSIIFSNYSAFD---------------TRRLGATIDVEHSHLRFL--------------- 49 (307)
T ss_dssp EEEEEE---ECCTTSSHHHHHHHHHSCCCTGG---------------GGGCCCCCSEEEEEEEET---------------
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHhCCCCcc---------------ccCcCCccceEEEEEEeC---------------
Confidence 578999 99999999999999965322211 112345666655555542
Q ss_pred CceeEEEeCCCCCCCc-----hHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH------hcCCceEEEEecCcccc
Q 007929 88 NEYLINLIDSPGHVDF-----SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL------GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 88 ~~~~inliDTPG~~df-----~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~------~~~~p~ivviNK~D~~~ 156 (584)
++..+++|||||+.+| .......++.+|++|+|+|+++.........|.... ..++|+++++||+|+..
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 1689999999999998 455667778999999999999887666655543322 22789999999999973
No 113
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.43 E-value=3e-14 Score=135.78 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=81.4
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
....++|++ +|+.|+|||||+++|+... ...+....++.+.....+.+.
T Consensus 30 ~~~~~ki~v---vG~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~------------ 78 (199)
T 3l0i_B 30 YDYLFKLLL---IGDSGVGKSCLLLRFADDT----------------YTESYISTIGVDFKIRTIELD------------ 78 (199)
T ss_dssp CSEEEEEEE---ECCTTSCCTTTTTSSBCCC----------------CCCHHHHHHCCSEEEEEEEET------------
T ss_pred cCcceEEEE---ECCCCCCHHHHHHHHhcCC----------------CCCCcCCcccceEEEEEEEEC------------
Confidence 456789999 9999999999999984210 111222234444444444444
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCceEEEEecCccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~----~~~p~ivviNK~D~~ 155 (584)
+..+.++||||||+.+|.......++.+|++|+|+|+.+.........|..... .++|+++|+||+|+.
T Consensus 79 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 79 --GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp --TEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred --CEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 224789999999999998888888999999999999998766555555543332 267889999999986
No 114
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.43 E-value=9.7e-13 Score=123.46 Aligned_cols=113 Identities=19% Similarity=0.135 Sum_probs=80.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|....- . .+ ..|+......+.+.
T Consensus 14 ~~~~ki~i---vG~~~vGKSsL~~~l~~~~~--~-------~~----------~~t~g~~~~~~~~~------------- 58 (181)
T 1fzq_A 14 DQEVRILL---LGLDNAGKTTLLKQLASEDI--S-------HI----------TPTQGFNIKSVQSQ------------- 58 (181)
T ss_dssp SSCEEEEE---EESTTSSHHHHHHHHCCSCC--E-------EE----------EEETTEEEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHhcCCC--C-------cc----------cCcCCeEEEEEEEC-------------
Confidence 46789999 99999999999999943210 0 00 01121122233444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+.+|||||+.+|.......++.+|++++|+|+++.-...... .+..+.+ .++|+++++||+|+..
T Consensus 59 ---~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 59 ---GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp ---TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 689999999999999988899999999999999998765444332 2233322 4688999999999973
No 115
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=4.4e-13 Score=128.35 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=81.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-. . .. ...++++.....+.+.
T Consensus 24 ~~~~ki~l---vG~~~vGKSsLi~~l~~~~~~--~-~~-------------~~t~~~~~~~~~~~~~------------- 71 (201)
T 2ew1_A 24 DFLFKIVL---IGNAGVGKTCLVRRFTQGLFP--P-GQ-------------GATIGVDFMIKTVEIN------------- 71 (201)
T ss_dssp SEEEEEEE---EESTTSSHHHHHHHHHHSSCC--T-TC-------------CCCCSEEEEEEEEEET-------------
T ss_pred ccceEEEE---ECcCCCCHHHHHHHHHhCCCC--C-CC-------------CCccceeEEEEEEEEC-------------
Confidence 46789999 999999999999999753211 0 00 0112222222233333
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HH---hcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~---~~~~p~ivviNK~D~~ 155 (584)
+....++||||||+.+|.......++.+|++|+|+|+++.........|.. +. ..++|+++|+||+|+.
T Consensus 72 -~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 72 -GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp -TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred -CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 225789999999999999888899999999999999987654443333422 22 2467888999999996
No 116
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.42 E-value=2.1e-13 Score=127.54 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=79.8
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhcccee-cceEEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~-~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
+.++|++ +|+.|+|||||+++|+...- ...... |+. .....+.+.
T Consensus 4 ~~~~i~~---~G~~~~GKssl~~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~~------------- 49 (186)
T 1mh1_A 4 QAIKCVV---VGDGAVGKTCLLISYTTNAF--PGEYIP----------------TVFDNYSANVMVD------------- 49 (186)
T ss_dssp EEEEEEE---ECSTTSSHHHHHHHHHHSSC--CSSCCC----------------CSCCEEEEEEEET-------------
T ss_pred cEEEEEE---ECCCCCCHHHHHHHHHcCCC--CCCcCC----------------cccceeEEEEEEC-------------
Confidence 5689999 99999999999999975321 110000 111 011112222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh-c--CCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG-E--RIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~-~--~~p~ivviNK~D~~~ 156 (584)
+....+.+|||||+.+|.......++.+|++++|+|+.++...+... .|..... . ++|+++|+||+|+..
T Consensus 50 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 50 -GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp -TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred -CEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 23577889999999999888888899999999999998865555443 3433222 2 789999999999973
No 117
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.42 E-value=4e-13 Score=126.91 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=81.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|+...-... ... ...+++. .+.
T Consensus 47 ~~~~i~v---vG~~g~GKSsll~~l~~~~~~~~--------~~~-----~~~~~~~-------~~~-------------- 89 (193)
T 2ged_A 47 YQPSIII---AGPQNSGKTSLLTLLTTDSVRPT--------VVS-----QEPLSAA-------DYD-------------- 89 (193)
T ss_dssp CCCEEEE---ECCTTSSHHHHHHHHHHSSCC--------------------------------CCC--------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhcCCCCcc--------ccc-----CCCceee-------eec--------------
Confidence 5578999 99999999999999975432110 000 0000111 112
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhh----cCeEEEEEeCCCCCch-hHH-HHHHHHHh-------cCCceEEEEecCc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCIEGVCV-QTE-TVLRQALG-------ERIRPVLTVNKMD 153 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~----~D~ailvvda~~g~~~-~t~-~~l~~~~~-------~~~p~ivviNK~D 153 (584)
...+.+|||||+.+|.......++. +|++|+|+|+...... ... ..+..+.. .++|+++|+||+|
T Consensus 90 --~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 167 (193)
T 2ged_A 90 --GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 167 (193)
T ss_dssp --CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred --CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchH
Confidence 5778999999999987777666665 8999999999832222 111 22222221 3789999999999
Q ss_pred cccccccCCHHHHHHHHHHHHHHH
Q 007929 154 RCFLELQVDGEEAYQTFQKVIENA 177 (584)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~v 177 (584)
+.. ....+++.+.+++.+..+
T Consensus 168 l~~---~~~~~~~~~~l~~~l~~l 188 (193)
T 2ged_A 168 LFT---ARPPSKIKDALESEIQKV 188 (193)
T ss_dssp STT---CCCHHHHHHHHHHHHHHH
T ss_pred hcC---CCCHHHHHHHHHHHHHHH
Confidence 974 344555555565555544
No 118
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.42 E-value=1.1e-12 Score=123.47 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=70.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...-. ....+ .+.......+.+.
T Consensus 19 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~--~~~~~---------------t~~~~~~~~~~~~------------- 65 (190)
T 3con_A 19 MTEYKLVV---VGAGGVGKSALTIQLIQNHFV--DEYDP---------------TIEDSYRKQVVID------------- 65 (190)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHHSSCC--SCCCT---------------TCCEEEEEEEEET-------------
T ss_pred cceeEEEE---ECcCCCCHHHHHHHHHcCCCc--cccCC---------------ccceEEEEEEEEC-------------
Confidence 36689999 999999999999999754211 10010 0001111122222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+.+.||||||+.+|.......++.+|++++|+|+.+.........|.. +.. .++|+++|+||+|+..
T Consensus 66 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 66 -GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -TEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred -CEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 225779999999999999888999999999999999987655444443322 221 3789999999999873
No 119
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.42 E-value=4.6e-13 Score=125.04 Aligned_cols=114 Identities=21% Similarity=0.203 Sum_probs=76.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc-eEEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~-~~~~~~~~~~~~~~~~~~~~ 85 (584)
+.++|++ +|+.|+|||||+++|+...- ...... |+... ...+.+.
T Consensus 5 ~~~ki~~---~G~~~~GKSsli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~~------------- 50 (181)
T 3t5g_A 5 KSRKIAI---LGYRSVGKSSLTIQFVEGQF--VDSYDP----------------TIENTFTKLITVN------------- 50 (181)
T ss_dssp EEEEEEE---EESTTSSHHHHHHHHHHSSC--CSCCCT----------------TCCEEEEEEEEET-------------
T ss_pred ceEEEEE---ECcCCCCHHHHHHHHHcCCC--CCCCCC----------------CccccEEEEEEEC-------------
Confidence 5689999 99999999999999974321 110010 11111 1112222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-----HHHhcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-----QALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-----~~~~~~~p~ivviNK~D~~ 155 (584)
+..+.+++|||||+.+|.......++.+|++++|+|+.+.........|. .+...++|+++|+||+|+.
T Consensus 51 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 51 -GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp -TEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred -CEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 22578899999999999877778889999999999998754443333332 2123478999999999986
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.42 E-value=3.9e-13 Score=133.84 Aligned_cols=111 Identities=22% Similarity=0.238 Sum_probs=82.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
.+|++ +|++|+|||||+++|.+..- .+.+ ..|+|++.....+.+.
T Consensus 2 ~kI~l---vG~~n~GKSTL~n~L~g~~~----------~v~~------~pg~Tv~~~~~~~~~~---------------- 46 (256)
T 3iby_A 2 THALL---IGNPNCGKTTLFNALTNANQ----------RVGN------WPGVTVEKKTGEFLLG---------------- 46 (256)
T ss_dssp CEEEE---EESTTSSHHHHHHHHHTTSE----------EEEE------CTTSSSEEEEEEEEET----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHHCCCC----------CccC------CCCceEEEEEEEEEEC----------------
Confidence 36888 99999999999999954321 1111 1257777777777776
Q ss_pred ceeEEEeCCCCCCCchHH----------HHHHh--hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSE----------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e----------~~~~l--~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+..++||||||+.+|... ....+ +.+|++|+|+|++. ......++.++...++|+++|+||+|+..
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAE 124 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHH
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 789999999999988642 23344 68999999999987 23444555666677999999999999873
No 121
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.42 E-value=5e-13 Score=126.03 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=80.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...-.... ...++.+.....+.+.
T Consensus 18 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~------------- 65 (189)
T 1z06_A 18 SRIFKIIV---IGDSNVGKTCLTYRFCAGRFPDRT----------------EATIGVDFRERAVDID------------- 65 (189)
T ss_dssp -CEEEEEE---ECCTTSSHHHHHHHHHHSSCCSSC----------------CCCCSCCEEEEEEEET-------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHHcCCCCCCC----------------CCCcceEEEEEEEEEC-------------
Confidence 46789999 999999999999999753221100 0112222222223332
Q ss_pred CCCceeEEEeCCCCCCCch-HHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHH----hcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~-~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~----~~~~p~ivviNK~D~~~ 156 (584)
+....++||||||+.+|. ......++.+|++|+|+|+++.........|. .+. ..++|+++|+||+|+..
T Consensus 66 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 66 -GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp -TEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred -CEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 225789999999999987 66778899999999999998754443333332 222 34788999999999963
No 122
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.42 E-value=3.9e-13 Score=128.27 Aligned_cols=117 Identities=20% Similarity=0.153 Sum_probs=79.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...... +....++.+.....+.+.
T Consensus 23 ~~~~ki~v---~G~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~------------- 70 (200)
T 2o52_A 23 DFLFKFLV---IGSAGTGKSCLLHQFIENKFKQ----------------DSNHTIGVEFGSRVVNVG------------- 70 (200)
T ss_dssp CEEEEEEE---EESTTSSHHHHHHHHHC----------------------------CCEEEEEEEET-------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHHhCCCCc----------------cCCCcccceeEEEEEEEC-------------
Confidence 35689999 9999999999999996432110 001112222222223222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HH---hcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~---~~~~p~ivviNK~D~~ 155 (584)
+....++||||||+.+|.......++.+|++|+|+|+.+....+....|.. +. ..++|+++|+||+|+.
T Consensus 71 -~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 71 -GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp -TEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred -CeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 224789999999999888888889999999999999988655544444422 22 2478889999999996
No 123
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.41 E-value=7.8e-13 Score=122.08 Aligned_cols=111 Identities=21% Similarity=0.251 Sum_probs=75.3
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|++|+|||||+++|....... + ...++|++.....+.+.
T Consensus 3 ~~~v~l---vG~~gvGKStL~~~l~~~~~~~-----~-----------~~~~~t~~~~~~~~~~~--------------- 48 (165)
T 2wji_A 3 SYEIAL---IGNPNVGKSTIFNALTGENVYI-----G-----------NWPGVTVEKKEGEFEYN--------------- 48 (165)
T ss_dssp EEEEEE---ECSTTSSHHHHHHHHHCCSSSC-----C----------------CCCCCEEEEEET---------------
T ss_pred ccEEEE---ECCCCCCHHHHHHHHhCCCeec-----c-----------CCCCcceeeeEEEEEEC---------------
Confidence 578999 9999999999999996321100 0 01234555444455555
Q ss_pred CceeEEEeCCCCCCCchH------HHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSS------EVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~------e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+.+|||||+.+|.. .....++ .+|++++|+|+... ......+..+.+.++|+++|+||+|+.
T Consensus 49 -~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 49 -GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp -TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred -CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 68899999999998752 2233343 78999999999762 122233445555689999999999986
No 124
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.41 E-value=2.3e-13 Score=131.82 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=83.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-.. .+. ...|++.......+.
T Consensus 13 ~~~~ki~v---~G~~~~GKSsli~~~~~~~~~~--------~~~------~t~~~~~~~~~~~~~--------------- 60 (221)
T 3gj0_A 13 QVQFKLVL---VGDGGTGKTTFVKRHLTGEFEK--------KYV------ATLGVEVHPLVFHTN--------------- 60 (221)
T ss_dssp CCEEEEEE---EECTTSSHHHHHTTBHHHHHTC--------EEE------TTTTEEEEEEEEEET---------------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHcCCCCC--------CCC------CccceeEEEEEEEEC---------------
Confidence 46789999 9999999999999965332100 000 011233333222222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh---cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~---~~~p~ivviNK~D~~~ 156 (584)
...+.+++|||||+.+|.......++.+|++|+|+|+.++...+....|..... .++|+++|+||+|+..
T Consensus 61 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 61 -RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp -TEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred -CEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 226889999999999998888899999999999999998766555555543332 2789999999999873
No 125
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.40 E-value=3.7e-13 Score=128.38 Aligned_cols=119 Identities=14% Similarity=0.121 Sum_probs=61.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+......... ....+.++.....+.+.
T Consensus 18 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~------------- 67 (208)
T 2yc2_C 18 TLRCKVAV---VGEATVGKSALISMFTSKGSKFLKD--------------YAMTSGVEVVVAPVTIP------------- 67 (208)
T ss_dssp EEEEEEEE---C------------------------------------------------CEEEECT-------------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHhCCCcccCC--------------CCCccceEEEEEEEEEC-------------
Confidence 35689999 9999999999999996541111100 00001112222233333
Q ss_pred CCC--ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh------cCCceEEEEecCccc
Q 007929 86 QGN--EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG------ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~--~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~------~~~p~ivviNK~D~~ 155 (584)
+. .+.+.||||||+.+|.......++.+|++|+|+|++++........|.. +.. .++|+++|+||+|+.
T Consensus 68 -~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 68 -DTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp -TSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred -CcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 22 5789999999999998888888999999999999988765444444433 222 478899999999997
No 126
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.40 E-value=1.4e-12 Score=119.99 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=69.0
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|++|+|||||+++|+......... ...+.+.....+.+. +
T Consensus 2 ~~ki~i---vG~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~ 48 (169)
T 3q85_A 2 VFKVML---VGESGVGKSTLAGTFGGLQGDHAHE----------------MENSEDTYERRIMVD--------------K 48 (169)
T ss_dssp EEEEEE---ECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEET--------------T
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHhccCccccc----------------CCCcCCeeeEEEEEC--------------C
Confidence 478999 9999999999999996432211100 001122222222222 2
Q ss_pred CceeEEEeCCCCCCCchH-HHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~-e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~ 155 (584)
..+.+.+|||||+.+|.. .....++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 367899999999999876 444567889999999999875433333233 33222 278999999999987
No 127
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.40 E-value=2.1e-13 Score=131.54 Aligned_cols=128 Identities=19% Similarity=0.081 Sum_probs=81.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...-. .. ....++++.....+.+....+ .....
T Consensus 23 ~~~~ki~v---vG~~~~GKSsLi~~l~~~~~~--~~--------------~~~t~~~~~~~~~~~~~~~~~----~~~~~ 79 (217)
T 2f7s_A 23 DYLIKLLA---LGDSGVGKTTFLYRYTDNKFN--PK--------------FITTVGIDFREKRVVYNAQGP----NGSSG 79 (217)
T ss_dssp SEEEEEEE---ESCTTSSHHHHHHHHHCSCCC--CE--------------EEEEEEEEEEEEEEEEEC-----------C
T ss_pred ceeEEEEE---ECcCCCCHHHHHHHHhcCCCC--cC--------------CCCceeEEEEEEEEEECCccc----ccccc
Confidence 46789999 999999999999999642210 00 000111121222222221000 00000
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh-----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~-----~~~p~ivviNK~D~~~ 156 (584)
......++||||||+.+|.......++.+|++|+|+|+.+....+....|..... .++|+++|+||+|+..
T Consensus 80 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 80 KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp CEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred CceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 1115789999999999999999999999999999999988655554444433222 4678899999999963
No 128
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.40 E-value=3.4e-13 Score=127.03 Aligned_cols=113 Identities=19% Similarity=0.128 Sum_probs=81.5
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+... . .+. ..|+......+.+.
T Consensus 20 ~~~~~i~v---~G~~~~GKssli~~l~~~~--~----------~~~-------~~t~~~~~~~~~~~------------- 64 (189)
T 2x77_A 20 DRKIRVLM---LGLDNAGKTSILYRLHLGD--V----------VTT-------VPTVGVNLETLQYK------------- 64 (189)
T ss_dssp TSCEEEEE---EEETTSSHHHHHHHTCCSC--C----------EEE-------CSSTTCCEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHcCC--C----------CCc-------CCCCceEEEEEEEC-------------
Confidence 46899999 9999999999999994211 1 000 11233333344444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+.+|.......++.+|++|+|+|+++.-..... ..+..+.. .++|+++|+||+|+..
T Consensus 65 ---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 65 ---NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp ---TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 78999999999999888777888999999999999987544333 23334333 3788899999999973
No 129
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.40 E-value=5e-13 Score=138.72 Aligned_cols=179 Identities=11% Similarity=0.043 Sum_probs=100.7
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccccccccCCHHHHHH
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~~~ 168 (584)
++.++||||||+.++... ..+.+|++++|+|+..+...+.... ...++|.++|+||+|+.. . .
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~------~----~ 210 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDN------H----T 210 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTC------H----H
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCC------h----H
Confidence 688999999999887654 3689999999999987754332211 112568899999999973 1 2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcceecccCCccccccCCcceeeehhhHHHHhhhhcCCChHhHHHHhhcCcccCcCCCe
Q 007929 169 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 248 (584)
Q Consensus 169 ~~~~~l~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~f~~~y~~~~~vd~~~~~~~~~~~~~~~~~~~~ 248 (584)
.+...+++++..+..+.... .. ..| .+...|+..|.++ ..+. +........|. . +.
T Consensus 211 ~~~~~~~~l~~~l~~~~~~~-~~--~~~---~vi~iSA~~g~gi--~~L~---------~~l~~~~~~~~-----~-~~- 266 (341)
T 2p67_A 211 NVAIARHMYESALHILRRKY-DE--WQP---RVLTCSALEKRGI--DEIW---------HAIIDFKTALT-----A-SG- 266 (341)
T ss_dssp HHHHHHHHHHHHHHHSCCSB-TT--BCC---EEEECBGGGTBSH--HHHH---------HHHHHHHHHHH-----H-TT-
T ss_pred HHHHHHHHHHHHHHhccccc-cC--CCC---cEEEeeCCCCCCH--HHHH---------HHHHHHHHHHH-----h-CC-
Confidence 45555556665553321100 00 001 1223355555542 1111 11111111111 0 00
Q ss_pred eeecCCCCCccchhhHHHhhhHHHHHHHHHhcCChHHHHHHHHhcCCCCCHHHHHHhHHHHHHHHHH-hhccc--hHHHH
Q 007929 249 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ-TWLPA--SSALL 325 (584)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~v~~-~~~P~--~~~LL 325 (584)
.+++. ...+.+..+.|.+ ++.++++|+++ ++.+++. .+|.+++.. .+.|+ ++.||
T Consensus 267 ---------~~~~~---r~~~~~~~~~e~i---~e~l~~~~~~~----~~~~~~~---~~l~~~v~~~~~~P~~~~~~~~ 324 (341)
T 2p67_A 267 ---------RLQQV---RQQQSVEWLRKQT---EEEVLNHLFAN----EDFDRYY---RQTLLAVKNNTLSPRTGLRQLS 324 (341)
T ss_dssp ---------HHHHH---HHHHHHHHHHHHH---HHHHHHHHHHC----HHHHHHH---HHHHHHHHTTSSCHHHHHHHHH
T ss_pred ---------hHHHH---HHHHHHHHHHHHH---HHHHHHHHHhC----cchhHHH---HHHHHHHHhCCCCHHHHHHHHH
Confidence 12322 2333556666664 67889999985 6666666 778888775 89997 78899
Q ss_pred HHHHh
Q 007929 326 EMMIF 330 (584)
Q Consensus 326 d~i~~ 330 (584)
+.+..
T Consensus 325 ~~~~~ 329 (341)
T 2p67_A 325 EFIQT 329 (341)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 88765
No 130
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.40 E-value=4.7e-13 Score=125.05 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=78.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+... . . ....|+......+.+.
T Consensus 16 ~~~~~i~v---~G~~~~GKssli~~l~~~~--~----------~-------~~~~t~~~~~~~~~~~------------- 60 (183)
T 1moz_A 16 NKELRILI---LGLDGAGKTTILYRLQIGE--V----------V-------TTKPTIGFNVETLSYK------------- 60 (183)
T ss_dssp SSCEEEEE---EEETTSSHHHHHHHTCCSE--E----------E-------EECSSTTCCEEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCC--c----------C-------ccCCcCccceEEEEEC-------------
Confidence 36789999 9999999999999994211 0 0 0112233333344444
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+.+|.......++.+|++++|+|+.+....+... .+..+.+ .++|+++|+||+|+..
T Consensus 61 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 61 ---NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp ---TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 689999999999999888888899999999999998875444332 3333332 5678899999999973
No 131
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.40 E-value=2.4e-12 Score=129.43 Aligned_cols=123 Identities=15% Similarity=0.237 Sum_probs=77.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+......... .+ .......++++......+.+.
T Consensus 7 ~~~~I~v---vG~~g~GKSTLin~L~~~~~~~~~~-~~-------~~~~~~~t~~~~~~~~~~~~~-------------- 61 (274)
T 3t5d_A 7 FEFTLMV---VGESGLGKSTLINSLFLTDLYSPEY-PG-------PSHRIKKTVQVEQSKVLIKEG-------------- 61 (274)
T ss_dssp CEEEEEE---EECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC---------------
T ss_pred cEEEEEE---ECCCCCCHHHHHHHHhCCCccccCC-CC-------cccccCCceEEEEEEEEEecC--------------
Confidence 4689999 9999999999999995433222110 00 001112334444444444333
Q ss_pred CCceeEEEeCCCCCCCchH-------HH-------HHHhhh-------------cCeEEEEEeCC-CCCchhHHHHHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSS-------EV-------TAALRI-------------TDGALVVVDCI-EGVCVQTETVLRQA 138 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~-------e~-------~~~l~~-------------~D~ailvvda~-~g~~~~t~~~l~~~ 138 (584)
+....++||||||+.++.. .+ ...++. +|++++++++. .+.......+++.+
T Consensus 62 ~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l 141 (274)
T 3t5d_A 62 GVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL 141 (274)
T ss_dssp -CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH
T ss_pred CeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 2245899999999965422 11 333333 67888888665 48888888888886
Q ss_pred HhcCCceEEEEecCccc
Q 007929 139 LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 139 ~~~~~p~ivviNK~D~~ 155 (584)
.. ++|+++|+||+|+.
T Consensus 142 ~~-~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 142 HE-KVNIIPLIAKADTL 157 (274)
T ss_dssp TT-TSCEEEEESSGGGS
T ss_pred hc-cCCEEEEEeccCCC
Confidence 55 89999999999987
No 132
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.40 E-value=6.2e-13 Score=129.16 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=80.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+........ ...++.......+.+.
T Consensus 11 ~~~~ki~v---~G~~~vGKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~------------- 58 (223)
T 3cpj_B 11 DLLFKIVL---IGDSGVGKSNLLSRFTKNEFNMDS----------------KSTIGVEFATRTLEIE------------- 58 (223)
T ss_dssp CEEEEEEE---ESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEET-------------
T ss_pred CeeeEEEE---ECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC-------------
Confidence 45689999 999999999999999754321100 0112222222233333
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHHh---cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~~---~~~p~ivviNK~D~~~ 156 (584)
+..+.+.||||||+.+|.......++.+|++|+|+|+.++...+....|. .+.. .++|+++|+||+|+..
T Consensus 59 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 59 -GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp -TEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred -CEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 22478999999999999888888999999999999998876555544443 2222 3678899999999973
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.39 E-value=2.8e-13 Score=146.27 Aligned_cols=114 Identities=20% Similarity=0.213 Sum_probs=67.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+.....+... ..|+|.+.....+.+.
T Consensus 232 ~~~kV~i---vG~~nvGKSSLln~L~~~~~a~vs~---------------~~gtT~d~~~~~i~~~-------------- 279 (476)
T 3gee_A 232 EGVSTVI---AGKPNAGKSTLLNTLLGQERAIVSH---------------MPGTTRDYIEECFIHD-------------- 279 (476)
T ss_dssp HCEEEEE---ECCTTSSHHHHHHHCC---------------------------------CEEEEET--------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCCcccCC---------------CCCceEEEEEEEEEEC--------------
Confidence 4578999 9999999999999996543322221 2245666655566666
Q ss_pred CCceeEEEeCCCCCCCchHHHH--------HHhhhcCeEEEEEeCCCCCch----hHHHHHHHHHhcCCceEEEEecCcc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVT--------AALRITDGALVVVDCIEGVCV----QTETVLRQALGERIRPVLTVNKMDR 154 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~--------~~l~~~D~ailvvda~~g~~~----~t~~~l~~~~~~~~p~ivviNK~D~ 154 (584)
++.++||||||+.++...+. ..++.+|++|+|+|++++... ....++..+ . ++|+++|+||+|+
T Consensus 280 --g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~~piIvV~NK~Dl 355 (476)
T 3gee_A 280 --KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P-AAKFLTVANKLDR 355 (476)
T ss_dssp --TEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-TSEEEEEEECTTS
T ss_pred --CeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-CCCEEEEEECcCC
Confidence 78999999999988765432 356889999999999998877 333333332 2 7889999999999
Q ss_pred cc
Q 007929 155 CF 156 (584)
Q Consensus 155 ~~ 156 (584)
..
T Consensus 356 ~~ 357 (476)
T 3gee_A 356 AA 357 (476)
T ss_dssp CT
T ss_pred CC
Confidence 73
No 134
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.39 E-value=4.1e-12 Score=127.40 Aligned_cols=115 Identities=13% Similarity=0.160 Sum_probs=76.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|++......... .+.|.......+.+.
T Consensus 38 ~~~~I~v---vG~~g~GKSSLin~l~~~~~~~~~~~---------------~~~t~~~~~~~~~~~-------------- 85 (270)
T 1h65_A 38 NSLTILV---MGKGGVGKSSTVNSIIGERVVSISPF---------------QSEGPRPVMVSRSRA-------------- 85 (270)
T ss_dssp CEEEEEE---EESTTSSHHHHHHHHHTSCCSCCCSS---------------SCCCSSCEEEEEEET--------------
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHhCCCcccccCC---------------CCcceeeEEEEEeeC--------------
Confidence 4689999 99999999999999985433221111 123444434444444
Q ss_pred CCceeEEEeCCCCCCCch---HHHHHHh------hhcCeEEEEEeCCC-CCchhHHHHHHHHHhc-C----CceEEEEec
Q 007929 87 GNEYLINLIDSPGHVDFS---SEVTAAL------RITDGALVVVDCIE-GVCVQTETVLRQALGE-R----IRPVLTVNK 151 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~---~e~~~~l------~~~D~ailvvda~~-g~~~~t~~~l~~~~~~-~----~p~ivviNK 151 (584)
+..++||||||+.+|. ......+ +.+|++|+|+|... .........++.+... + .|+++|+||
T Consensus 86 --~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK 163 (270)
T 1h65_A 86 --GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTH 163 (270)
T ss_dssp --TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred --CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence 7899999999998764 2222232 26899999988754 3444444555554332 2 588999999
Q ss_pred Cccc
Q 007929 152 MDRC 155 (584)
Q Consensus 152 ~D~~ 155 (584)
+|+.
T Consensus 164 ~Dl~ 167 (270)
T 1h65_A 164 AQFS 167 (270)
T ss_dssp CSCC
T ss_pred cccC
Confidence 9986
No 135
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.39 E-value=1.2e-12 Score=124.80 Aligned_cols=116 Identities=20% Similarity=0.160 Sum_probs=79.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~ 84 (584)
.+.++|++ +|+.|+|||||+++|+...-.... . .|+.... ..+.+
T Consensus 22 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~--~----------------~t~~~~~~~~~~~------------- 67 (201)
T 3oes_A 22 VRYRKVVI---LGYRCVGKTSLAHQFVEGEFSEGY--D----------------PTVENTYSKIVTL------------- 67 (201)
T ss_dssp -CEEEEEE---EESTTSSHHHHHHHHHHSCCCSCC--C----------------CCSEEEEEEEEC--------------
T ss_pred CCcEEEEE---ECCCCcCHHHHHHHHHhCCCCCCC--C----------------CccceEEEEEEEE-------------
Confidence 46789999 999999999999999754321100 0 0111111 11111
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-HHh----cCCceEEEEecCcccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~~~----~~~p~ivviNK~D~~~ 156 (584)
++..+.++||||||+.+|.......++.+|++|+|+|+.+....+....|.. +.. .++|+++|+||+|+..
T Consensus 68 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 68 -GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp ----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred -CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 1236889999999999998888889999999999999987655444444433 222 3688999999999873
No 136
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1.1e-12 Score=124.15 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=81.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc-eEEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~-~~~~~~~~~~~~~~~~~~~ 84 (584)
...++|++ +|+.|+|||||+++|+...- ..... -|+... ...+.+.
T Consensus 16 ~~~~ki~v---~G~~~~GKssli~~l~~~~~--~~~~~----------------~t~~~~~~~~~~~~------------ 62 (194)
T 2atx_A 16 ALMLKCVV---VGDGAVGKTCLLMSYANDAF--PEEYV----------------PTVFDHYAVSVTVG------------ 62 (194)
T ss_dssp EEEEEEEE---EECTTSSHHHHHHHHHHSSC--CCSCC----------------CSSCCCEEEEEESS------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCCC--CCCCC----------------CcccceeEEEEEEC------------
Confidence 46789999 99999999999999975421 11001 011111 1122222
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HH-HHHHhc--CCceEEEEecCcccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l-~~~~~~--~~p~ivviNK~D~~~ 156 (584)
+..+.+++|||||+.+|.......++.+|++|+|+|+.+....+... .| ..+.+. ++|+++|+||+|+..
T Consensus 63 --~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 63 --GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp --SCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred --CEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 23578999999999999888888899999999999998765444432 33 333333 789999999999973
No 137
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.39 E-value=4.8e-13 Score=143.91 Aligned_cols=114 Identities=21% Similarity=0.278 Sum_probs=77.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+.....+.....+ +|.+.....+.+.
T Consensus 223 ~~~kV~i---vG~~nvGKSSLln~L~~~~~a~v~~~~g---------------tT~d~~~~~i~~~-------------- 270 (462)
T 3geh_A 223 TGLKVAI---VGRPNVGKSSLLNAWSQSDRAIVTDLPG---------------TTRDVVESQLVVG-------------- 270 (462)
T ss_dssp HCEEEEE---EECTTSSHHHHHHHHHHHHBSCCSCCTT---------------CCHHHHHHEEEET--------------
T ss_pred CCCEEEE---EcCCCCCHHHHHHHHhCCCcccccCCCC---------------eeEEEEEEEEEEC--------------
Confidence 4578999 9999999999999998876544333232 3444443445555
Q ss_pred CCceeEEEeCCCCCCCchHHHHH--------HhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTA--------ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~--------~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
++.++||||||+.++...+.. .++.+|++|+|+|++.+...+...++..+. ..|+++|+||+|+..
T Consensus 271 --g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~ 344 (462)
T 3geh_A 271 --GIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVE 344 (462)
T ss_dssp --TEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSC
T ss_pred --CEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCc
Confidence 788999999999876544333 567899999999999998888877776643 368999999999974
No 138
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.39 E-value=1.2e-12 Score=130.42 Aligned_cols=112 Identities=24% Similarity=0.370 Sum_probs=83.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|++|+|||||+++|.+..-. ..+ ..|+|+......+.+.
T Consensus 4 ~~~kI~l---vG~~nvGKTsL~n~l~g~~~~----------~~~------~pg~tv~~~~~~~~~~-------------- 50 (258)
T 3a1s_A 4 HMVKVAL---AGCPNVGKTSLFNALTGTKQY----------VAN------WPGVTVEKKEGVFTYK-------------- 50 (258)
T ss_dssp EEEEEEE---ECCTTSSHHHHHHHHHTTCEE----------EEE------CTTSCCEEEEEEEEET--------------
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHCCCCc----------ccC------CCCceEEEEEEEEEEC--------------
Confidence 4688999 999999999999999542110 111 1367777766666665
Q ss_pred CCceeEEEeCCCCCCCchHH-----H-HHHh--hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSE-----V-TAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e-----~-~~~l--~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+..+.||||||+.+|... + ...+ ..+|++++|+|++..- .....+.++...++|+++++||+|+.
T Consensus 51 --~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 51 --GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp --TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred --CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 789999999999887641 2 2333 4799999999998742 23345567677899999999999986
No 139
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.39 E-value=4.7e-13 Score=122.88 Aligned_cols=113 Identities=18% Similarity=0.103 Sum_probs=62.4
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|++|+|||||+++|+....... ....+.+.. ..+.+. +
T Consensus 2 ~~ki~~---vG~~~~GKSsli~~l~~~~~~~~---------------~~~~~~~~~---~~~~~~--------------~ 46 (166)
T 3q72_A 2 VYKVLL---LGAPGVGKSALARIFGGVEDGPE---------------AEAAGHTYD---RSIVVD--------------G 46 (166)
T ss_dssp CCEEEE---EESTTSSHHHHHHHHCCC-------------------------CEEE---EEEEET--------------T
T ss_pred eEEEEE---ECCCCCCHHHHHHHHcCccccCC---------------CCccccceE---EEEEEC--------------C
Confidence 578999 99999999999999942111000 001112221 111222 2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~ 155 (584)
....+.+|||||+.+|.......++.+|++++|+|+.+.-.......| ..+.. .++|+++|+||+|+.
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 367899999999999988888899999999999999875443333333 33333 368999999999987
No 140
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.38 E-value=1.1e-12 Score=134.39 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=54.1
Q ss_pred ceeEEEeCCCCCCC-------------chHHHHHHhhhcCeEEEEEeC-CCCCchhHH-HHHHHHHhcCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDC-IEGVCVQTE-TVLRQALGERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~d-------------f~~e~~~~l~~~D~ailvvda-~~g~~~~t~-~~l~~~~~~~~p~ivviNK~D 153 (584)
+..++||||||+.+ |...+..+++.+|++++|+|+ ..+...+.. .+++.+...+.|+++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 57899999999864 556677889999999999997 566654443 666776667889999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 210 l~~ 212 (315)
T 1jwy_B 210 LMD 212 (315)
T ss_dssp SSC
T ss_pred cCC
Confidence 973
No 141
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.38 E-value=2e-12 Score=121.48 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=79.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|+.|+|||||+++|+..... . +...++|++.....+.+.
T Consensus 6 ~~~~i~l---vG~~gvGKStL~~~l~~~~~~----------~------~~~~~~t~~~~~~~~~~~-------------- 52 (188)
T 2wjg_A 6 KSYEIAL---IGNPNVGKSTIFNALTGENVY----------I------GNWPGVTVEKKEGEFEYN-------------- 52 (188)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHTTCEE----------E------EECTTSCCEEEEEEEEET--------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCcc----------c------cCCCCeeccceEEEEEeC--------------
Confidence 5689999 999999999999999643110 0 011245555555555555
Q ss_pred CCceeEEEeCCCCCCCchH------HHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSS------EVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~------e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+..+++|||||+.+|.. .....++ .+|++++|+|+... ......+..+...+.|+++++||+|+..
T Consensus 53 --~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 53 --GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp --TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred --CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 78999999999998842 2233343 48999999998751 2223344555667889999999999863
No 142
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=1.2e-12 Score=124.00 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=78.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceE-EEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~-~~~~~~~~~~~~~~~~~ 84 (584)
...++|++ +|+.|+|||||+++|+...-. .... .|+..... .+...
T Consensus 6 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~--~~~~----------------~t~~~~~~~~~~~~------------ 52 (199)
T 2gf0_A 6 SNDYRVVV---FGAGGVGKSSLVLRFVKGTFR--DTYI----------------PTIEDTYRQVISCD------------ 52 (199)
T ss_dssp CCCEEEEE---EECTTSSHHHHHHHHHHSCCC--CTTS----------------CCCCEEEEEEEEET------------
T ss_pred CCeeEEEE---ECCCCCcHHHHHHHHHcCCCC--Cccc----------------CccccceeEEEEEC------------
Confidence 45689999 999999999999999753211 0000 01111110 11111
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh-----cCCceEEEEecCcccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG-----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~-----~~~p~ivviNK~D~~~ 156 (584)
...+.+.||||||+.+|.......++.+|++|+|+|+.+........ .|..+.. .++|+++|+||+|+..
T Consensus 53 --~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 53 --KSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp --TEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred --CEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 22578999999999999998899999999999999998754333322 2222222 3679999999999873
No 143
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.38 E-value=1e-12 Score=142.06 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=89.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|.+|+|||||+++|+.....+..... ++|.+.....+.+.
T Consensus 242 ~~~kV~i---vG~pnvGKSSLln~L~~~~~a~vs~~~---------------gTT~d~~~~~i~~~-------------- 289 (482)
T 1xzp_A 242 RGLRMVI---VGKPNVGKSTLLNRLLNEDRAIVTDIP---------------GTTRDVISEEIVIR-------------- 289 (482)
T ss_dssp HCEEEEE---ECCHHHHTCHHHHHHHHHTBCCCCCSS---------------CCSSCSCCEEEEET--------------
T ss_pred CCCEEEE---ECcCCCcHHHHHHHHHCCCCCccCCCC---------------CeeeeeEEEEEecC--------------
Confidence 3479999 999999999999999877544333323 35566555566666
Q ss_pred CCceeEEEeCCCCCC-Cch--------HHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHV-DFS--------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~-df~--------~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+..++||||||+. ++. ..+...++.+|++|+|+|++++...+...+|..+ .++|+++|+||+|+..
T Consensus 290 --g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 290 --GILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp --TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred --CeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 7889999999998 654 2356788999999999999998877777777654 4789999999999973
No 144
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.37 E-value=8.3e-13 Score=126.01 Aligned_cols=117 Identities=13% Similarity=0.034 Sum_probs=79.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+....... ... .++... ...+.+.
T Consensus 23 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~--~~~--------------t~~~~~-~~~~~~~------------- 69 (201)
T 2gco_A 23 AIRKKLVI---VGDGACGKTCLLIVFSKDQFPEV--YVP--------------TVFENY-IADIEVD------------- 69 (201)
T ss_dssp CEEEEEEE---EESTTSSHHHHHHHHHHSSCCSS--CCC--------------SSCCCC-EEEEEET-------------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHhCcCCcc--cCC--------------cccceE-EEEEEEC-------------
Confidence 45689999 99999999999999975432110 000 011111 0112222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHH-HHh--cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-ALG--ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~-~~~--~~~p~ivviNK~D~~~ 156 (584)
+....+.||||||+.+|.......++.+|++|+|+|+.+....+.. ..|.. +.. .++|+++|+||+|+..
T Consensus 70 -~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 70 -GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp -TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred -CEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 2257899999999999988888889999999999999875443333 23333 222 2789999999999973
No 145
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.37 E-value=6.2e-13 Score=127.38 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=80.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-. ....+ .+.......+.+.
T Consensus 28 ~~~~ki~v---vG~~~~GKSsLi~~l~~~~~~--~~~~~---------------t~~~~~~~~~~~~------------- 74 (204)
T 4gzl_A 28 GQAIKCVV---VGDGAVGKTCLLISYTTNAFP--GEYIP---------------TVFDNYSANVMVD------------- 74 (204)
T ss_dssp --CEEEEE---EESTTSSHHHHHHHHHHSCCC--C-CCC---------------CSEEEEEEEEECC-------------
T ss_pred CCeEEEEE---ECcCCCCHHHHHHHHHhCCCC--CCcCC---------------eecceeEEEEEEC-------------
Confidence 46789999 999999999999999753221 10010 1111111112222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~---~~~p~ivviNK~D~~~ 156 (584)
+..+.+++|||||+.+|.......++.+|++++|+|+.++...+... .|..... .++|+++|+||+|+..
T Consensus 75 -~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 75 -GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp --CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred -CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 33677889999999999888888999999999999999876655543 3433332 2789999999999973
No 146
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=127.72 Aligned_cols=116 Identities=22% Similarity=0.210 Sum_probs=74.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|++|+|||||+++|+....... .....++|.......+.+.
T Consensus 28 ~~~~i~l---vG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~-------------- 76 (239)
T 3lxx_A 28 SQLRIVL---VGKTGAGKSATGNSILGRKVFHS--------------GTAAKSITKKCEKRSSSWK-------------- 76 (239)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEET--------------
T ss_pred CceEEEE---ECCCCCCHHHHHHHHcCCCcCcc--------------CCCCCceeeeEEEEEEEeC--------------
Confidence 5689999 99999999999999975332111 1112245666666666676
Q ss_pred CCceeEEEeCCCCCCCch-------HHHHH----HhhhcCeEEEEEeCCCCCchhHHHHHHHHH-----hcCCceEEEEe
Q 007929 87 GNEYLINLIDSPGHVDFS-------SEVTA----ALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVN 150 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~-------~e~~~----~l~~~D~ailvvda~~g~~~~t~~~l~~~~-----~~~~p~ivviN 150 (584)
+..++||||||+.+.. .++.. +.+.+|++|+|+|+.... ......+..+. ....|+++|+|
T Consensus 77 --~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~l~~~~~~~~~~~~~~~iiv~n 153 (239)
T 3lxx_A 77 --ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT-EEEHKATEKILKMFGERARSFMILIFT 153 (239)
T ss_dssp --TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS-SHHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred --CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC-HHHHHHHHHHHHHhhhhccceEEEEEe
Confidence 7899999999976532 23333 334569999999987433 33333333332 23458999999
Q ss_pred cCcccc
Q 007929 151 KMDRCF 156 (584)
Q Consensus 151 K~D~~~ 156 (584)
|+|+..
T Consensus 154 K~D~~~ 159 (239)
T 3lxx_A 154 RKDDLG 159 (239)
T ss_dssp CGGGC-
T ss_pred CCccCC
Confidence 999973
No 147
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.37 E-value=3.7e-13 Score=125.58 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=74.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...- .....+ +..+ ... ..+.+
T Consensus 6 ~~~~ki~v---~G~~~~GKssl~~~~~~~~~--~~~~~~--t~~~----------~~~---~~~~~-------------- 51 (182)
T 3bwd_D 6 SRFIKCVT---VGDGAVGKTCLLISYTSNTF--PTDYVP--TVFD----------NFS---ANVVV-------------- 51 (182)
T ss_dssp -CCCEEEE---ECSTTSSHHHHHHHHHHSCC--C----------------------CB---CCCC---------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCCC--CCCCCC--eeee----------eEE---EEEEE--------------
Confidence 45789999 99999999999999975321 110000 0000 000 00011
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
++....+++|||||+.+|.......++.+|++++|+|+.+........ .|..... .++|+++|+||+|+.
T Consensus 52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp ------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred CCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 122567889999999999888888999999999999998765544443 3433333 278999999999986
No 148
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.37 E-value=4e-12 Score=123.23 Aligned_cols=124 Identities=21% Similarity=0.165 Sum_probs=82.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|..|+|||||+.+++...- . .+.. .|+.......... .+
T Consensus 12 k~~Kivl---vGd~~VGKTsLi~r~~~~~f--~--------------~~~~--~Tig~d~~~k~~~------------~~ 58 (216)
T 4dkx_A 12 RKFKLVF---LGEQSVGKTSLITRFMYDSF--D--------------NTYQ--ATIGIDFLSKTMY------------LE 58 (216)
T ss_dssp -CEEEEE---ECSTTSSHHHHHHHHHHSCC--C--------------------------CEEEEEE------------CS
T ss_pred CcEEEEE---ECcCCcCHHHHHHHHHhCCC--C--------------CCcC--CccceEEEEEEEE------------ec
Confidence 6789999 99999999999999964211 0 0001 1222221111111 12
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH----HhcCCceEEEEecCccccccccCC
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRCFLELQVD 162 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~----~~~~~p~ivviNK~D~~~~~~~~~ 162 (584)
+..+++.||||+|+++|.......++.+|++++|+|.+..-......-|... ...++|++||.||+|+.. +...+
T Consensus 59 ~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~-~r~V~ 137 (216)
T 4dkx_A 59 DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVS 137 (216)
T ss_dssp SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSC
T ss_pred ceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh-cCccc
Confidence 3468899999999999999999999999999999999876555544444322 234678889999999873 33444
Q ss_pred HH
Q 007929 163 GE 164 (584)
Q Consensus 163 ~~ 164 (584)
.+
T Consensus 138 ~~ 139 (216)
T 4dkx_A 138 IE 139 (216)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 149
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.36 E-value=1.4e-12 Score=123.44 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=80.6
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~ 84 (584)
...++|++ +|+.|+|||||+++|+...- ..... .|+.... ..+.+.
T Consensus 21 ~~~~ki~~---vG~~~~GKSsl~~~l~~~~~--~~~~~----------------~t~~~~~~~~~~~~------------ 67 (194)
T 3reg_A 21 KKALKIVV---VGDGAVGKTCLLLAFSKGEI--PTAYV----------------PTVFENFSHVMKYK------------ 67 (194)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHHSCC--CSSCC----------------CCSEEEEEEEEEET------------
T ss_pred ceeeEEEE---ECcCCCCHHHHHHHHhcCCC--CCccC----------------CeeeeeeEEEEEEC------------
Confidence 35689999 99999999999999975431 11101 0111111 111222
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh---cCCceEEEEecCcccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~---~~~p~ivviNK~D~~~ 156 (584)
+..+.+++|||||+.+|.......++.+|++|+|+|+.+....... ..|....+ .++|+++|+||+|+..
T Consensus 68 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 68 --NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp --TEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred --CEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 2367789999999999998888899999999999999886554442 33433322 3688999999999873
No 150
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.36 E-value=6.6e-13 Score=127.51 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=79.1
Q ss_pred CCccccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhh
Q 007929 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALK 79 (584)
Q Consensus 1 ~~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~ 79 (584)
|++.....++|++ +|..|+|||||+++|+...-.. ... .|+.... ..+.+.
T Consensus 21 m~~~~~~~~ki~v---vG~~~vGKSsLi~~l~~~~~~~--~~~----------------~t~~~~~~~~~~~~------- 72 (205)
T 1gwn_A 21 MDPNQNVKCKIVV---VGDSQCGKTALLHVFAKDCFPE--NYV----------------PTVFENYTASFEID------- 72 (205)
T ss_dssp ------CEEEEEE---EESTTSSHHHHHHHHHHSCCCS--SCC----------------CCSEEEEEEEEESS-------
T ss_pred CCcccceeeEEEE---ECCCCCCHHHHHHHHhcCCCCC--CcC----------------CccceeEEEEEEEC-------
Confidence 4444556789999 9999999999999997532210 000 1111111 112222
Q ss_pred cccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHH-HHHh--cCCceEEEEecCccc
Q 007929 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALG--ERIRPVLTVNKMDRC 155 (584)
Q Consensus 80 ~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~-~~~~--~~~p~ivviNK~D~~ 155 (584)
+....+.||||||+.+|.......++.+|++|+|+|++........ ..|. .+.+ .++|+++|+||+|+.
T Consensus 73 -------~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 73 -------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp -------SSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred -------CEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 3367899999999999988777888999999999999876544443 3342 2222 378889999999997
No 151
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=124.93 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=77.5
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+... ...... ..+.......+.+.
T Consensus 18 ~~~~ki~~---~G~~~~GKssl~~~l~~~~--~~~~~~---------------~t~~~~~~~~~~~~------------- 64 (201)
T 2q3h_A 18 GRGVKCVL---VGDGAVGKTSLVVSYTTNG--YPTEYI---------------PTAFDNFSAVVSVD------------- 64 (201)
T ss_dssp --CEEEEE---ECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEET-------------
T ss_pred CcceEEEE---ECCCCCCHHHHHHHHHhCC--CCCCCC---------------CcccceeEEEEEEC-------------
Confidence 46789999 9999999999999996432 110000 01111111122222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHH-HHh--cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQ-ALG--ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~-~~~--~~~p~ivviNK~D~~~ 156 (584)
+..+.+.+|||||+.+|.......++.+|++|+|+|+++........ .|.. +.. .++|+++|+||+|+..
T Consensus 65 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 65 -GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp -TEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred -CEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 22567889999999999887778889999999999998765544432 3432 222 3789999999999973
No 152
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.36 E-value=9.6e-13 Score=126.41 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=78.4
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc-eEEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~-~~~~~~~~~~~~~~~~~~~ 84 (584)
...++|++ +|+.|+|||||+++|+...- ..... .|+... ...+.+.
T Consensus 7 ~~~~ki~i---~G~~~~GKTsli~~l~~~~~--~~~~~----------------~t~~~~~~~~~~~~------------ 53 (212)
T 2j0v_A 7 SKFIKCVT---VGDGAVGKTCMLICYTSNKF--PTDYI----------------PTVFDNFSANVAVD------------ 53 (212)
T ss_dssp CCEEEEEE---EESTTSSHHHHHHHHHHSCC--CSSCC----------------CSSCCCEEEEEECS------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCCC--CccCC----------------CccceeEEEEEEEC------------
Confidence 35689999 99999999999999975321 11000 011111 1112222
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCceEEEEecCccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~---~~~p~ivviNK~D~~ 155 (584)
+..+.+.||||||+.+|.......++.+|++|+|+|+.+........ .|..... .++|+++|+||+|+.
T Consensus 54 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 54 --GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp --SCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred --CEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 23578999999999999888888899999999999998765544432 3433222 278999999999986
No 153
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=8.5e-12 Score=118.28 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=76.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~ 84 (584)
...++|++ +|+.|+|||||+++|+...-... .. .|+.... ..+.+.
T Consensus 26 ~~~~ki~v---~G~~~vGKSsli~~l~~~~~~~~--~~----------------~t~~~~~~~~~~~~------------ 72 (196)
T 2atv_A 26 SAEVKLAI---FGRAGVGKSALVVRFLTKRFIWE--YD----------------PTLESTYRHQATID------------ 72 (196)
T ss_dssp -CCEEEEE---ECCTTSSHHHHHHHHHHSCCCSC--CC----------------TTCCEEEEEEEEET------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHhCCCCcc--cC----------------CCCCceEEEEEEEC------------
Confidence 45689999 99999999999999976422110 00 1111111 112222
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHH----hcCCceEEEEecCcccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~----~~~~p~ivviNK~D~~~ 156 (584)
+..+.+.+|||||+.+ .......++.+|++++|+|+++.-.......| ..+. ..++|+++|+||+|+..
T Consensus 73 --~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 73 --DEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp --TEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred --CEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 2267899999999998 67778888999999999999874333222222 2222 25789999999999973
No 154
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=1e-12 Score=125.92 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=78.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc-eEEEEeecchhhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~-~~~~~~~~~~~~~~~~~~~~ 85 (584)
..++|++ +|+.|+|||||+++|+....... .. .|+... ...+.+.
T Consensus 24 ~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~--~~----------------~t~~~~~~~~~~~~------------- 69 (207)
T 2fv8_A 24 IRKKLVV---VGDGACGKTCLLIVFSKDEFPEV--YV----------------PTVFENYVADIEVD------------- 69 (207)
T ss_dssp EEEEEEE---EECTTSSHHHHHHHHHHSSCC-------------------------CCEEEEEEEET-------------
T ss_pred cCcEEEE---ECcCCCCHHHHHHHHhcCCCCCc--CC----------------CcccceEEEEEEEC-------------
Confidence 4679999 99999999999999975322100 00 011111 1112222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHH-HHHh--cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALG--ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~-~~~~--~~~p~ivviNK~D~~~ 156 (584)
+....+.||||||+.+|.......++.+|++|+|+|+.+....... ..|. .+.. .++|+++|+||+|+..
T Consensus 70 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 70 -GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp -TEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred -CEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 2257899999999999988888889999999999999875443333 2333 3222 2789999999999973
No 155
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.35 E-value=3.9e-12 Score=123.95 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=75.4
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
..+.++|++ +|..|+|||||+++|+...-. ..+ ..+.|.......+.+.
T Consensus 26 ~~~~~kI~v---vG~~~vGKSsLin~l~~~~~~----------~~~------~~~~t~~~~~~~~~~~------------ 74 (228)
T 2qu8_A 26 NPHKKTIIL---SGAPNVGKSSFMNIVSRANVD----------VQS------YSFTTKNLYVGHFDHK------------ 74 (228)
T ss_dssp CTTSEEEEE---ECSTTSSHHHHHHHHTTTCEE----------EEC------C-----CEEEEEEEET------------
T ss_pred CCCCCEEEE---ECCCCCCHHHHHHHHhCCCCc----------cCC------CCCcceeeeeeeeecC------------
Confidence 346789999 999999999999999643210 000 0123333333333333
Q ss_pred CCCCceeEEEeCCCCCCCch---------HHHHHHhhhcCeEEEEEeCCCCCchh---HHHHHHHHHhc--CCceEEEEe
Q 007929 85 RQGNEYLINLIDSPGHVDFS---------SEVTAALRITDGALVVVDCIEGVCVQ---TETVLRQALGE--RIRPVLTVN 150 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~---------~e~~~~l~~~D~ailvvda~~g~~~~---t~~~l~~~~~~--~~p~ivviN 150 (584)
+..+.||||||+.++. .........+|++|+|+|+++..... ....+..+... ++|+++|+|
T Consensus 75 ----~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~n 150 (228)
T 2qu8_A 75 ----LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFN 150 (228)
T ss_dssp ----TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEE
T ss_pred ----CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEe
Confidence 6889999999994321 11233457789999999998875433 22344444443 789999999
Q ss_pred cCcccc
Q 007929 151 KMDRCF 156 (584)
Q Consensus 151 K~D~~~ 156 (584)
|+|+..
T Consensus 151 K~Dl~~ 156 (228)
T 2qu8_A 151 KIDKCN 156 (228)
T ss_dssp CGGGCC
T ss_pred CcccCC
Confidence 999973
No 156
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=126.74 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=65.2
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceec-ceEEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS-TGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~-~~~~~~~~~~~~~~~~~~~~ 84 (584)
.+.++|++ +|+.|+|||||+++|+...- ..... .|+.. ....+.+.
T Consensus 32 ~~~~ki~v---vG~~~vGKSsli~~l~~~~~--~~~~~----------------~t~~~~~~~~~~~~------------ 78 (214)
T 2j1l_A 32 VRSVKVVL---VGDGGCGKTSLLMVFADGAF--PESYT----------------PTVFERYMVNLQVK------------ 78 (214)
T ss_dssp CCEEEEEE---EECTTSSHHHHHHHHHC---------C----------------CCCCEEEEEEEEET------------
T ss_pred cceEEEEE---ECcCCCCHHHHHHHHHcCCC--CCCCC----------------CccceeEEEEEEEC------------
Confidence 35689999 99999999999999963211 00000 11111 11112222
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh---cCCceEEEEecCcccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~---~~~p~ivviNK~D~~~ 156 (584)
+....++||||||+.+|.......++.+|++|+|+|+++........ .|..... .++|+++|+||+|+..
T Consensus 79 --~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 79 --GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp --TEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred --CEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 23568999999999999888888999999999999998765444432 3433222 3789999999999973
No 157
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.35 E-value=9.7e-13 Score=123.55 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=78.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~ 84 (584)
...++|++ +|+.|+|||||+++|+...-. .... .|+.... ..+.+.
T Consensus 5 ~~~~ki~v---~G~~~vGKSsli~~l~~~~~~--~~~~----------------~t~~~~~~~~~~~~------------ 51 (184)
T 1m7b_A 5 NVKCKIVV---VGDSQCGKTALLHVFAKDCFP--ENYV----------------PTVFENYTASFEID------------ 51 (184)
T ss_dssp -CEEEEEE---EESTTSSHHHHHHHHHHSCCC--SSCC----------------CCSEEEEEEEEECS------------
T ss_pred ceEEEEEE---ECCCCCCHHHHHHHHhcCCCC--CCCC----------------CccceeEEEEEEEC------------
Confidence 45689999 999999999999999753211 0000 1111111 111222
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHH-HHh--cCCceEEEEecCccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-ALG--ERIRPVLTVNKMDRC 155 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~-~~~--~~~p~ivviNK~D~~ 155 (584)
+....+.+|||||+.+|.......++.+|++|+|+|+++....... ..|.. +.. .++|+++|+||+|+.
T Consensus 52 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 52 --TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp --SCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred --CEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 3367899999999999988777888999999999999876544443 33422 222 378889999999997
No 158
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.35 E-value=5.7e-13 Score=128.62 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=80.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|+...-. . ....|+........+.. .
T Consensus 9 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~--~----------------~~~~t~~~~~~~~~~~~-----------~ 56 (218)
T 4djt_A 9 ELTYKICL---IGDGGVGKTTYINRVLDGRFE--K----------------NYNATVGAVNHPVTFLD-----------D 56 (218)
T ss_dssp -CEEEEEE---ECCTTSSHHHHHCBCTTCSTT--C----------------EEETTTTEEEEEEEEEB-----------T
T ss_pred cCccEEEE---ECCCCCCHHHHHHHHhcCCCC--C----------------CCCCccceeeEEEEEEe-----------C
Confidence 45689999 999999999999999532110 0 00112221122222220 1
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH----HHHhcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~----~~~~~~~p~ivviNK~D~~ 155 (584)
++....+++|||||+.+|.......++.+|++|+|+|+.++...+....|. .....++|+++|+||+|+.
T Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 122378999999999999888888899999999999999886666554442 2233468999999999987
No 159
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.34 E-value=7.2e-12 Score=118.11 Aligned_cols=114 Identities=16% Similarity=0.091 Sum_probs=74.4
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~ 84 (584)
...++|++ +|..|+|||||+++|+...- ..... .|+.... ..+.+.
T Consensus 19 ~~~~ki~v---vG~~~vGKTsLi~~l~~~~~--~~~~~----------------~t~~~~~~~~~~~~------------ 65 (187)
T 3c5c_A 19 PLEVNLAI---LGRRGAGKSALTVKFLTKRF--ISEYD----------------PNLEDTYSSEETVD------------ 65 (187)
T ss_dssp -CEEEEEE---ECCTTSSHHHHHHHHHHSSC--CSCCC----------------TTCCEEEEEEEEET------------
T ss_pred CceEEEEE---ECCCCCcHHHHHHHHHhCCC--CcccC----------------CCccceeeEEEEEC------------
Confidence 46789999 99999999999999975431 11000 1111111 111111
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh------cCCceEEEEecCccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 155 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~------~~~p~ivviNK~D~~ 155 (584)
+....+.||||||+.+|.. +...++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 66 --~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 66 --HQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp --TEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred --CEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 2367899999999998876 36788999999999999875444444333 22222 478999999999996
No 160
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.34 E-value=3.8e-12 Score=122.95 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=79.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecce-EEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~-~~~~~~~~~~~~~~~~~~ 84 (584)
...++|++ +|..|+|||||+++|+...-... .. .|+.... ..+..
T Consensus 25 ~~~~ki~v---vG~~~vGKSsL~~~l~~~~~~~~--~~----------------~t~~~~~~~~~~~------------- 70 (214)
T 3q3j_B 25 VARCKLVL---VGDVQCGKTAMLQVLAKDCYPET--YV----------------PTVFENYTACLET------------- 70 (214)
T ss_dssp --CEEEEE---ECSTTSSHHHHHHHHHHSCCCSS--CC----------------CCSEEEEEEEEEC-------------
T ss_pred cceEEEEE---ECcCCCCHHHHHHHHhcCCCCCC--cC----------------CeeeeeEEEEEEE-------------
Confidence 36789999 99999999999999975422110 00 0111111 11111
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhH-HHHHHH-HHh--cCCceEEEEecCcccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQ-ALG--ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t-~~~l~~-~~~--~~~p~ivviNK~D~~~ 156 (584)
++..+.+.||||||+.+|.......++.+|++|+|+|+++...... ...|.. +.. .++|+++|+||+|+..
T Consensus 71 -~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 71 -EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp ---CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred -CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 1336889999999999998888888999999999999998765554 344433 222 3788999999999973
No 161
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.34 E-value=2.7e-12 Score=132.55 Aligned_cols=112 Identities=21% Similarity=0.158 Sum_probs=77.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|++|+|||||+++|+... . ... ..|+......+.+.
T Consensus 164 ~~~kI~i---vG~~~vGKSsLl~~l~~~~--~----------~~~-------~pT~~~~~~~~~~~-------------- 207 (329)
T 3o47_A 164 KEMRILM---VGLDAAGKTTILYKLKLGE--I----------VTT-------IPTIGFNVETVEYK-------------- 207 (329)
T ss_dssp CSEEEEE---EESTTSSHHHHHHHTCSSC--C----------EEE-------EEETTEEEEEEEET--------------
T ss_pred CcceEEE---ECCCCccHHHHHHHHhCCC--C----------CCc-------ccccceEEEEEecC--------------
Confidence 5578999 9999999999999994321 0 000 01444444455555
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh----cCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~----~~~p~ivviNK~D~~~ 156 (584)
+..++||||||+.+|.......++.+|++|+|+|+++....... ..|..+.. .++|+++|+||+|+..
T Consensus 208 --~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 208 --NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp --TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred --cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 78999999999999999999999999999999999775444333 22333332 2788999999999974
No 162
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.33 E-value=1e-11 Score=116.88 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=75.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|..|+|||||+++|+...-.. +..+ |.......+.+.
T Consensus 18 ~~~~ki~i---vG~~~vGKSsL~~~~~~~~~~~-----------~~~~-------t~~~~~~~~~~~------------- 63 (184)
T 3ihw_A 18 GPELKVGI---VGNLSSGKSALVHRYLTGTYVQ-----------EESP-------EGGRFKKEIVVD------------- 63 (184)
T ss_dssp CCEEEEEE---ECCTTSCHHHHHHHHHHSSCCC-----------CCCT-------TCEEEEEEEEET-------------
T ss_pred CCeeEEEE---ECCCCCCHHHHHHHHhcCCCCC-----------CcCC-------CcceEEEEEEEC-------------
Confidence 46789999 9999999999999997532110 0000 111111222232
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~ 155 (584)
+..+.+.||||||+.+|. .++.+|++++|+|+++....+....| ..+.. .++|+++++||+|+.
T Consensus 64 -~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 64 -GQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp -TEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred -CEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 225778899999999876 77889999999999987665554444 33333 367889999999985
No 163
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.32 E-value=1.4e-11 Score=114.56 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=73.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecc-eEEEEeecchhhhhccccc
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~-~~~~~~~~~~~~~~~~~~~ 84 (584)
...++|++ +|..|+|||||+++|+...-.. .. -|+... ...+.+.
T Consensus 5 ~~~~ki~~---vG~~~vGKTsli~~l~~~~~~~------------~~-------~t~~~~~~~~~~~~------------ 50 (178)
T 2iwr_A 5 IPELRLGV---LGDARSGKSSLIHRFLTGSYQV------------LE-------KTESEQYKKEMLVD------------ 50 (178)
T ss_dssp CCEEEEEE---ECCGGGCHHHHHHHHHHSCCCC------------CS-------SCSSSEEEEEEEET------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHhCCCCC------------cC-------CCcceeEEEEEEEC------------
Confidence 35789999 9999999999999997532210 00 011111 1112222
Q ss_pred CCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHH-H---Hh---cCCceEEEEecCccc
Q 007929 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A---LG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~-~---~~---~~~p~ivviNK~D~~ 155 (584)
+....+++|||||+.+ ...++.+|++|+|+|+++.........|.. + .. .++|+++|+||+|+.
T Consensus 51 --~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 51 --GQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp --TEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred --CEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2257899999999987 356788999999999987665555554421 1 22 367889999999984
No 164
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.31 E-value=8.1e-12 Score=118.77 Aligned_cols=117 Identities=18% Similarity=0.103 Sum_probs=76.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|.+|+|||||+++|........ . ...++.+.....+.+.
T Consensus 21 ~~~~ki~v---vG~~~vGKSsLi~~l~~~~~~~~--------------~--~~~~~~~~~~~~~~~~------------- 68 (195)
T 3cbq_A 21 DGIFKVML---VGESGVGKSTLAGTFGGLQGDSA--------------H--EPENPEDTYERRIMVD------------- 68 (195)
T ss_dssp -CEEEEEE---ECSTTSSHHHHHHHTCCEECCGG--------------G--TTTSCTTEEEEEEEET-------------
T ss_pred CcEEEEEE---ECCCCCCHHHHHHHHHhccCCcc--------------C--CCCcccceEEEEEEEC-------------
Confidence 46789999 99999999999999943222110 0 0112222222223333
Q ss_pred CCCceeEEEeCCCCCCCchH-HHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~-e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~ 155 (584)
+....+.+|||||+.+|.. .....++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 69 -~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 69 -KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp -TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred -CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 2257889999999998765 445667889999999999875443333333 22222 378899999999996
No 165
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.30 E-value=7.3e-12 Score=136.64 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=85.4
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|.+|+|||||+++|+....... ..|+......+.+.
T Consensus 320 ~~~~ki~l---vG~~nvGKSsLl~~l~~~~~~~~-------------------~~T~~~~~~~~~~~------------- 364 (497)
T 3lvq_E 320 NKEMRILM---LGLDAAGKTTILYKLKLGQSVTT-------------------IPTVGFNVETVTYK------------- 364 (497)
T ss_dssp CCEEEEEE---ECSTTSSHHHHHHHHHHSSCCCC-------------------CCCSSEEEEEEESS-------------
T ss_pred ccceeEEE---EcCCCCCHHHHHHHHhcCCCCCc-------------------CCccceeEEEEEeC-------------
Confidence 35689999 99999999999999976431110 01444444455555
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHHh----cCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~~----~~~p~ivviNK~D~~~ 156 (584)
++.++||||||+.+|.......++.+|++|+|+|+++....+....| ..+.+ .++|+++|+||+|+..
T Consensus 365 ---~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 365 ---NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp ---SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 78999999999999999888999999999999999987555444333 33333 3789999999999973
No 166
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.28 E-value=8.6e-12 Score=137.22 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=57.5
Q ss_pred eeEEEeCCCCCCC-----------chHHHHHHhhhcCeEEEEEeCCC-CCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 90 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 90 ~~inliDTPG~~d-----------f~~e~~~~l~~~D~ailvvda~~-g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
..++||||||+.+ |...+..+++.+|++|+|+|+.. +...++..++..+...+.|+++|+||+|+..
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence 4689999999976 77778888999999999999988 6777778887776666789999999999973
No 167
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.93 E-value=3.8e-13 Score=128.57 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=79.8
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
.+.++|++ +|+.|+|||||+++|+...- ...... .+.......+.+.
T Consensus 28 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~--~~~~~~---------------t~~~~~~~~~~~~------------- 74 (204)
T 3th5_A 28 GQAIKCVV---VGDGAVGKTCLLISYTTNAF--PGEYIP---------------TVFDNYSANVMVD------------- 74 (204)
Confidence 46789999 99999999999999964221 100000 0000001111111
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHHHHHh-c--CCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG-E--RIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~~~~~-~--~~p~ivviNK~D~~~ 156 (584)
+....+.+|||||+.+|.......++.+|++|+|+|++++...+... .|..... . ++|+++|+||+|+..
T Consensus 75 -~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 75 -GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 22567889999999999988888999999999999998876555543 3433222 2 788999999999973
No 168
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.27 E-value=7e-12 Score=125.81 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=75.6
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
+.++|++ +|++|+|||||+++|....-. +.++ .|+|+......+ .
T Consensus 2 ~~~kI~l---vG~~nvGKSTL~n~L~g~~~~----------v~~~------pg~tv~~~~~~~--~-------------- 46 (272)
T 3b1v_A 2 SMTEIAL---IGNPNSGKTSLFNLITGHNQR----------VGNW------PGVTVERKSGLV--K-------------- 46 (272)
T ss_dssp -CEEEEE---ECCTTSSHHHHHHHHHCCCCC----------CCSS------SCCCCSCEEEEC--T--------------
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHCCCCc----------ccCC------CCCcEEEEEEEE--e--------------
Confidence 3578999 999999999999999542110 0011 145555433222 1
Q ss_pred CCceeEEEeCCCCCCCchH------HHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSS------EVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~------e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
. +..+++|||||+.+|.. .....++ .+|++++|+|++.. ......+.++...++|+++++||+|+.
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 2 46799999999998862 2334444 59999999999863 223334455566799999999999986
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.27 E-value=1.5e-11 Score=124.65 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=52.9
Q ss_pred ceeEEEeCCCCCC-------------CchHHHHHHhhhcCeEE-EEEeCCCCCchhHH-HHHHHHHhcCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHV-------------DFSSEVTAALRITDGAL-VVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~-------------df~~e~~~~l~~~D~ai-lvvda~~g~~~~t~-~~l~~~~~~~~p~ivviNK~D 153 (584)
...++||||||+. .+...+..+++.+|.+| +|+|+..+...+.. .+++.+...+.|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 4689999999974 24455667888888776 68999998877765 456665556889999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 204 l~~ 206 (299)
T 2aka_B 204 LMD 206 (299)
T ss_dssp GSC
T ss_pred cCC
Confidence 973
No 170
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.19 E-value=1.5e-11 Score=115.45 Aligned_cols=120 Identities=17% Similarity=0.182 Sum_probs=71.8
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.++|++ +|.+|+|||||+++|........ + +....+.++.....+.+. ...+
T Consensus 2 ~~kv~i---vG~~gvGKStLl~~l~~~~~~~~----~----------~~~~t~g~~~~~~~~~~~-----------~~~~ 53 (184)
T 2zej_A 2 RMKLMI---VGNTGSGKTTLLQQLMKTKKSDL----G----------MQSATVGIDVKDWPIQIR-----------DKRK 53 (184)
T ss_dssp -CEEEE---ESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC------------------
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhcCCCccC----C----------CcceeccEEeEEeeeccc-----------cCCC
Confidence 478999 99999999999999953211100 0 000111122111111110 0012
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-chhHHHHH-HHHHh--cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-~~~t~~~l-~~~~~--~~~p~ivviNK~D~~ 155 (584)
....+.+|||||+.+|.......++.+|++++|+|.+++. .......| ..+.. .+.|+++|.||+|+.
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 3678999999999888776677788999999999998863 22223333 22222 367888999999997
No 171
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.19 E-value=5.3e-11 Score=111.57 Aligned_cols=109 Identities=23% Similarity=0.228 Sum_probs=66.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (584)
++|++ +|+.|+|||||+++|+...- .. +...++|..... +.+
T Consensus 2 ~ki~v---~G~~~~GKSsli~~l~~~~~-~~---------------~~~~~~t~~~~~--~~~----------------- 43 (190)
T 2cxx_A 2 ATIIF---AGRSNVGKSTLIYRLTGKKV-RR---------------GKRPGVTRKIIE--IEW----------------- 43 (190)
T ss_dssp CEEEE---EEBTTSSHHHHHHHHHSCCC-SS---------------SSSTTCTTSCEE--EEE-----------------
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCcCC-cc---------------CCCCCccceeEE--Eec-----------------
Confidence 57889 99999999999999964321 00 011134433222 111
Q ss_pred ceeEEEeCCCCC-----------CCchHHHHHHhh----hcCeEEEEEeCCCC-----------CchhHHHHHHHHHhcC
Q 007929 89 EYLINLIDSPGH-----------VDFSSEVTAALR----ITDGALVVVDCIEG-----------VCVQTETVLRQALGER 142 (584)
Q Consensus 89 ~~~inliDTPG~-----------~df~~e~~~~l~----~~D~ailvvda~~g-----------~~~~t~~~l~~~~~~~ 142 (584)
..+++|||||+ ..|.......++ .+++++.|+|+... ...++..++..+...+
T Consensus 44 -~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
T 2cxx_A 44 -KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 122 (190)
T ss_dssp -TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred -CCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC
Confidence 15899999995 334444444444 45566677776532 1122333445555678
Q ss_pred CceEEEEecCcccc
Q 007929 143 IRPVLTVNKMDRCF 156 (584)
Q Consensus 143 ~p~ivviNK~D~~~ 156 (584)
+|+++|+||+|+..
T Consensus 123 ~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 123 IPTIVAVNKLDKIK 136 (190)
T ss_dssp CCEEEEEECGGGCS
T ss_pred CceEEEeehHhccC
Confidence 99999999999974
No 172
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=6.6e-11 Score=114.15 Aligned_cols=118 Identities=21% Similarity=0.182 Sum_probs=72.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|.+|+|||||+++|+.....+..... .++.+.....+.+.
T Consensus 35 ~~~~kVvl---vG~~~vGKSSLl~r~~~~~~~~~~~~~---------------~~g~d~~~~~i~~~------------- 83 (211)
T 2g3y_A 35 NTYYRVVL---IGEQGVGKSTLANIFAGVHDSMDSDCE---------------VLGEDTYERTLMVD------------- 83 (211)
T ss_dssp CCEEEEEE---ECCTTSSHHHHHHHHHCCCCTTCCC------------------CCTTEEEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHhCCCCCCCcCC---------------ccceeeEEEEEEEC-------------
Confidence 35689999 999999999999999643322211100 01111111122222
Q ss_pred CCCceeEEEeCCCCCCCc-hHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHHh----cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df-~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~~----~~~p~ivviNK~D~~ 155 (584)
+....+.+|||+|.... ........+.+|++|+|+|.++.-.......|. .+.+ .++|+++|+||+|+.
T Consensus 84 -~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 84 -GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp -TEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred -CeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 22467889999998763 222233456789999999988654433333343 3332 368899999999996
No 173
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.15 E-value=3.8e-11 Score=123.30 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=79.5
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|.+|+|||||+++|....- .....+ .+.......+...
T Consensus 153 ~~~~~i~i---~G~~~~GKssli~~~~~~~~--~~~~~~---------------t~~~~~~~~~~~~------------- 199 (332)
T 2wkq_A 153 KELIKCVV---VGDGAVGKTCLLISYTTNAF--PGEYIP---------------TVFDNYSANVMVD------------- 199 (332)
T ss_dssp TTCEEEEE---EESTTSSHHHHHHHHHHSCC--CCSCCC---------------CSEEEEEEEEEET-------------
T ss_pred cceeEEEE---ECCCCCChHHHHHHHHhCCC--CcccCC---------------cccceeEEEEEEC-------------
Confidence 35689999 99999999999999965321 111111 1111111112222
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHH-HHH-HHHh--cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLR-QALG--ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~-~l~-~~~~--~~~p~ivviNK~D~~ 155 (584)
+....+++|||||+.+|.......++.+|++++|+|+++........ .|. .+.. .++|+++|+||+|+.
T Consensus 200 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 200 -GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp -TEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred -CEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 22567779999999999888888899999999999998876555443 332 2222 278999999999986
No 174
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.15 E-value=7.2e-11 Score=133.44 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=54.0
Q ss_pred eeEEEeCCCCCCC---chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH-HhcCCceEEEEecCcccc
Q 007929 90 YLINLIDSPGHVD---FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 90 ~~inliDTPG~~d---f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~-~~~~~p~ivviNK~D~~~ 156 (584)
..++||||||+.+ ....+...++.+|++|+|+|+..+........|... ...+.|+++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccc
Confidence 4699999999765 445566788999999999999998887777777643 345788889999999974
No 175
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.13 E-value=1.6e-10 Score=109.51 Aligned_cols=118 Identities=21% Similarity=0.198 Sum_probs=72.1
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|.+|+|||||+++|+.....+..... .++.+.....+.+.
T Consensus 4 ~~~~kv~l---vG~~~vGKSsL~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~------------- 52 (192)
T 2cjw_A 4 MTYYRVVL---IGEQGVGKSTLANIFAGVHDSMDSDXE---------------VLGEDTYERTLMVD------------- 52 (192)
T ss_dssp CCEEEEEE---ECSTTSSHHHHHHHHHHHSCCC----G---------------GGCTTEEEEEEEET-------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCcCCcCcccc---------------ccceeEEEEEEEEC-------------
Confidence 35689999 999999999999999765432221100 01111111222333
Q ss_pred CCCceeEEEeCCCCCCC-chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHHh----cCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~d-f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~~----~~~p~ivviNK~D~~ 155 (584)
+....+.++||+|... +........+.+|++++|+|.++.-.......|. .+.. .++|++++.||+|+.
T Consensus 53 -~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 53 -GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp -TEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred -CeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 2246778999999765 2222334567899999999998654433333332 2222 368899999999986
No 176
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.13 E-value=1.1e-10 Score=110.95 Aligned_cols=116 Identities=20% Similarity=0.176 Sum_probs=77.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|+........ ...++.......+.+.
T Consensus 4 ~~~kv~l---vG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~~~i~~~-------------- 50 (199)
T 2f9l_A 4 YLFKVVL---IGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFATRSIQVD-------------- 50 (199)
T ss_dssp EEEEEEE---ESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEET--------------
T ss_pred ceEEEEE---ECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEEC--------------
Confidence 4578999 999999999999999754221100 0011222222233333
Q ss_pred CCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH-HHHh---cCCceEEEEecCccc
Q 007929 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 155 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~-~~~~---~~~p~ivviNK~D~~ 155 (584)
+....+.+|||||+..|........+.+|++++|+|............|. .+.. .+.|+++++||+|+.
T Consensus 51 g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 51 GKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp TEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 22467889999999988777777788999999999998765544433332 2222 367788999999996
No 177
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.12 E-value=1.9e-10 Score=117.31 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=74.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
+|++ +|..|+|||||+.++.. +.... +....+.|+......+ . ..
T Consensus 1 KIvl---lGdsgvGKTSLl~~~~~--~~~~~-------------~~~~~~~Tig~~~~~v--~---------------~~ 45 (331)
T 3r7w_B 1 MVLL---MGVRRCGKSSICKVVFH--NMQPL-------------DTLYLESTSNPSLEHF--S---------------TL 45 (331)
T ss_dssp CEEE---ECSTTSSTTHHHHHHHS--CCCSG-------------GGTTCCCCCSCCCEEE--C---------------SS
T ss_pred CEEE---ECCCCCCHHHHHHHHHc--CCCCC-------------ccceecCeeeeeeEEE--c---------------cE
Confidence 4667 99999999999987632 11100 0001234444433332 1 14
Q ss_pred eeEEEeCCCCCCCchH---HHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH------hcCCceEEEEecCcccc
Q 007929 90 YLINLIDSPGHVDFSS---EVTAALRITDGALVVVDCIEGVCVQTETVLRQAL------GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 90 ~~inliDTPG~~df~~---e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~------~~~~p~ivviNK~D~~~ 156 (584)
.+++||||||+++|.. ......+.++++|+|+|+++. ......-|..+. ..++|+++++||+|+..
T Consensus 46 v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp SCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred EEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 7899999999999964 457788999999999999987 334444443322 24788899999999973
No 178
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.09 E-value=1.1e-10 Score=120.67 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=73.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|++ +|.+|+|||||+++|....- ...++ ...|.......+.+. ..
T Consensus 160 ~V~l---vG~~nvGKSTLln~L~~~~~----------~i~~~------~ftTl~p~~g~v~~~---------------~~ 205 (342)
T 1lnz_A 160 DVGL---VGFPSVGKSTLLSVVSSAKP----------KIADY------HFTTLVPNLGMVETD---------------DG 205 (342)
T ss_dssp CEEE---ESSTTSSHHHHHHHSEEECC----------EESST------TSSCCCCCEEEEECS---------------SS
T ss_pred eeee---eCCCCCCHHHHHHHHHcCCC----------ccccC------CccccCceEEEEEeC---------------CC
Confidence 6888 99999999999999943211 11111 123444444444444 13
Q ss_pred eeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCC---CCchhHHHHH-HHHHh-----cCCceEEEEecCc
Q 007929 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---GVCVQTETVL-RQALG-----ERIRPVLTVNKMD 153 (584)
Q Consensus 90 ~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~---g~~~~t~~~l-~~~~~-----~~~p~ivviNK~D 153 (584)
..+.|+||||+.+ +..+..+.+..+|++|+|+|++. .........| ..+.. ..+|+++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 7899999999643 44555666777999999999976 2222333333 33333 3688999999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
+.
T Consensus 286 l~ 287 (342)
T 1lnz_A 286 MP 287 (342)
T ss_dssp ST
T ss_pred CC
Confidence 97
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.08 E-value=2.7e-10 Score=118.98 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=50.7
Q ss_pred ceeEEEeCCCCCCCc-------------hHHHHHHhhhcCeEEEEEeCCC-CCc-hhHHHHHHHHHhcCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVDF-------------SSEVTAALRITDGALVVVDCIE-GVC-VQTETVLRQALGERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~df-------------~~e~~~~l~~~D~ailvvda~~-g~~-~~t~~~l~~~~~~~~p~ivviNK~D 153 (584)
...+.||||||..++ ...+..+++.+|++|+|+|+.. ... .....+++.+...+.|.++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 567999999999887 5567788899999999998753 222 2223444554456789999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 215 l~~ 217 (360)
T 3t34_A 215 LMD 217 (360)
T ss_dssp GCC
T ss_pred cCC
Confidence 973
No 180
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.07 E-value=4.9e-10 Score=116.91 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=74.3
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|++|+|||||+++|...... ..+ ..+.|.......+.+.
T Consensus 165 ~~~~~v~l---vG~~gvGKSTLin~L~~~~~~----------~~~------~~~~t~~~~~~~~~~~------------- 212 (357)
T 2e87_A 165 LEIPTVVI---AGHPNVGKSTLLKALTTAKPE----------IAS------YPFTTRGINVGQFEDG------------- 212 (357)
T ss_dssp SSSCEEEE---ECSTTSSHHHHHHHHCSSCCE----------EEC------CTTCSSCEEEEEEEET-------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhCCCCc----------cCC------CCCeeeceeEEEEEec-------------
Confidence 35678999 999999999999999532210 000 0123333333333333
Q ss_pred CCCceeEEEeCCCCCCCchH--------HHHHHh-hhcCeEEEEEeCCCCC--chhHH-HHHHHHHh--cCCceEEEEec
Q 007929 86 QGNEYLINLIDSPGHVDFSS--------EVTAAL-RITDGALVVVDCIEGV--CVQTE-TVLRQALG--ERIRPVLTVNK 151 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~--------e~~~~l-~~~D~ailvvda~~g~--~~~t~-~~l~~~~~--~~~p~ivviNK 151 (584)
+..+.+|||||+.++.. ....++ ..+|++++|+|++.+. ..... ..+..+.. .+.|+++|+||
T Consensus 213 ---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 213 ---YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp ---TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred ---CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 67899999999976431 222233 3589999999987753 33333 33333332 27899999999
Q ss_pred Ccccc
Q 007929 152 MDRCF 156 (584)
Q Consensus 152 ~D~~~ 156 (584)
+|+..
T Consensus 290 ~Dl~~ 294 (357)
T 2e87_A 290 IDVAD 294 (357)
T ss_dssp TTTCC
T ss_pred cccCC
Confidence 99973
No 181
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=4.2e-10 Score=117.48 Aligned_cols=125 Identities=16% Similarity=0.211 Sum_probs=63.6
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
..++|++ +|+.|+|||||+++|+....... + ..+....+....+++......+.+.
T Consensus 36 ~~~~I~v---vG~~g~GKSTLln~L~~~~~~~~----~---~~~~~~~~~~~ti~~~~~~~~~~~~-------------- 91 (361)
T 2qag_A 36 FEFTLMV---VGESGLGKSTLINSLFLTDLYPE----R---VIPGAAEKIERTVQIEASTVEIEER-------------- 91 (361)
T ss_dssp CEECEEE---CCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC------------------
T ss_pred CCEEEEE---EcCCCCCHHHHHHHHhCCCCCCC----C---cccCCCcccCCceeEEEEEEEeecC--------------
Confidence 4578999 99999999999999854311110 0 1111111122223232222222222
Q ss_pred CCceeEEEeCCCCCCCchH-------HHH-------HHhhhc-------------CeEEEEEeC-CCCCchhHHHHHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSS-------EVT-------AALRIT-------------DGALVVVDC-IEGVCVQTETVLRQA 138 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~-------e~~-------~~l~~~-------------D~ailvvda-~~g~~~~t~~~l~~~ 138 (584)
+....+++|||||+.++.. .+. ..++.+ |+++++|++ ..+.......+++.
T Consensus 92 ~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~- 170 (361)
T 2qag_A 92 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKA- 170 (361)
T ss_dssp CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHH-
T ss_pred CcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHH-
Confidence 2235799999999955432 222 344433 357788876 56666666555554
Q ss_pred HhcCCceEEEEecCcccc
Q 007929 139 LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 139 ~~~~~p~ivviNK~D~~~ 156 (584)
...++|+|+|+||+|+..
T Consensus 171 l~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 171 IHNKVNIVPVIAKADTLT 188 (361)
T ss_dssp TCS-SCEEEEEECCSSSC
T ss_pred hccCCCEEEEEECCCCCC
Confidence 457889999999999973
No 182
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.06 E-value=4.7e-10 Score=116.81 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=48.5
Q ss_pred ceeEEEeCCCCCCC-------------chHHHHHHhhhcC-eEEEEEeCCCCCchhHHH-HHHHHHhcCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVD-------------FSSEVTAALRITD-GALVVVDCIEGVCVQTET-VLRQALGERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~d-------------f~~e~~~~l~~~D-~ailvvda~~g~~~~t~~-~l~~~~~~~~p~ivviNK~D 153 (584)
...++||||||..+ +...+...++.++ .+++|+|+..+...+... +++.+...+.|.++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 46799999999743 2334445555454 566678888777766653 66665567889999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 209 l~~ 211 (353)
T 2x2e_A 209 LMD 211 (353)
T ss_dssp GSC
T ss_pred ccC
Confidence 973
No 183
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.06 E-value=6.8e-10 Score=115.88 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=72.4
Q ss_pred ee-EEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 9 IS-VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~-v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
++ |++ +|++|+|||||+++|..... . .+...+.|.+.....+.+.
T Consensus 179 ~~~V~l---vG~~naGKSTLln~L~~~~~-~---------------~~~~~~~T~d~~~~~i~~~--------------- 224 (364)
T 2qtf_A 179 IPSIGI---VGYTNSGKTSLFNSLTGLTQ-K---------------VDTKLFTTMSPKRYAIPIN--------------- 224 (364)
T ss_dssp CCEEEE---ECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEET---------------
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHCCCc-c---------------ccCCcccccCCEEEEEEEC---------------
Confidence 44 888 99999999999999953211 0 1112245665555566666
Q ss_pred CceeEEEeCCCCCCCc--------hHHHHHHhhhcCeEEEEEeCCCCC--chhHHHHH----HHHHhcCCceEEEEecCc
Q 007929 88 NEYLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGV--CVQTETVL----RQALGERIRPVLTVNKMD 153 (584)
Q Consensus 88 ~~~~inliDTPG~~df--------~~e~~~~l~~~D~ailvvda~~g~--~~~t~~~l----~~~~~~~~p~ivviNK~D 153 (584)
+..+.++||||+.+- ...+...++.+|++++|+|++++. .......| ......++|+++|.||+|
T Consensus 225 -g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~D 303 (364)
T 2qtf_A 225 -NRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303 (364)
T ss_dssp -TEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGG
T ss_pred -CEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCC
Confidence 678999999997431 122344578899999999998764 22222222 222224678999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 304 l~~ 306 (364)
T 2qtf_A 304 KIN 306 (364)
T ss_dssp GCC
T ss_pred CCC
Confidence 973
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.05 E-value=6.2e-10 Score=106.38 Aligned_cols=114 Identities=20% Similarity=0.209 Sum_probs=71.7
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
...+|++ +|+.|+|||||+++|+..... . ......|.|.... .+.+.
T Consensus 25 ~~~~v~l---vG~~g~GKSTLl~~l~g~~~~-~-------------~~~~~~G~~~~~~--~~~~~-------------- 71 (210)
T 1pui_A 25 TGIEVAF---AGRSNAGKSSALNTLTNQKSL-A-------------RTSKTPGRTQLIN--LFEVA-------------- 71 (210)
T ss_dssp CSEEEEE---EECTTSSHHHHHTTTCCC---------------------------CCEE--EEEEE--------------
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHhCCCcc-c-------------cccCCCccceeeE--EEEec--------------
Confidence 4467888 999999999999999432100 0 0001122333221 22223
Q ss_pred CCceeEEEeCCCCCCCc----------hHHHHHH---hhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCc
Q 007929 87 GNEYLINLIDSPGHVDF----------SSEVTAA---LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (584)
Q Consensus 87 ~~~~~inliDTPG~~df----------~~e~~~~---l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D 153 (584)
+ .+.++||||+.++ ...+... .+.+|++++++|+..+.......++..+...++|.+++.||+|
T Consensus 72 --~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D 148 (210)
T 1pui_A 72 --D-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKAD 148 (210)
T ss_dssp --T-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred --C-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEeccc
Confidence 2 5789999998642 2222222 3578999999999998776665666665667899999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 149 ~~s 151 (210)
T 1pui_A 149 KLA 151 (210)
T ss_dssp GSC
T ss_pred CCC
Confidence 873
No 185
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.04 E-value=1.8e-10 Score=126.82 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=78.4
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|.+|+|||||+++|....-. . ...-|+.....+.... .........
T Consensus 39 ~~~~kV~l---vG~~~vGKSSLl~~l~~~~~~--~----------------~~~~t~g~~~~~~~~~----~~~~v~~~~ 93 (535)
T 3dpu_A 39 LQEIKVHL---IGDGMAGKTSLLKQLIGETFD--P----------------KESQTHGLNVVTKQAP----NIKGLENDD 93 (535)
T ss_dssp CCEEEEEE---ESSSCSSHHHHHHHHHC-----------------------------CCCEEEEEGG----GSGGGTTCS
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHhcCCCC--C----------------CCCCccceEEEEeccc----cccceeecC
Confidence 45689999 999999999999999632210 0 0001121111111000 000001111
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~--~~p~ivviNK~D~~~ 156 (584)
++.+..+++|||||+..|.......++.+|++|+|+|++.+ ......+..+.+. +.|+++|+||+|+..
T Consensus 94 ~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp TTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred CCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 23468999999999999988888889999999999999865 2333334444443 489999999999973
No 186
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.03 E-value=6.5e-10 Score=105.08 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=78.0
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~ 85 (584)
...++|++ +|+.|+|||||+++|......... ...++.+.....+.+.
T Consensus 27 ~~~~kv~l---vG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~~~i~~~------------- 74 (191)
T 1oix_A 27 DYLFKVVL---IGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFATRSIQVD------------- 74 (191)
T ss_dssp SEEEEEEE---EECTTSSHHHHHHHHHHSCCCCSC----------------CCCCSEEEEEEEEEET-------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceEEEEEEEEEC-------------
Confidence 35688999 999999999999999654221100 0012222222233333
Q ss_pred CCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHH-HHHH---hcCCceEEEEecCcccc
Q 007929 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRCF 156 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l-~~~~---~~~~p~ivviNK~D~~~ 156 (584)
+....+.+|||||+..|...+....+.+|++++|+|.......+....| ..+. ..+.|+++++||+|+..
T Consensus 75 -g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 75 -GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp -TEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -CEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 2245677899999999888888888899999999998765433332223 2222 23667889999999863
No 187
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.01 E-value=1e-09 Score=114.36 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=45.2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
.++.+.||||||... .....+..+|.+|+|+|+..+...+... .. -...|.++|+||+|+..
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~~--~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--KG--VLELADIVVVNKADGEH 231 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--TT--SGGGCSEEEEECCCGGG
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--Hh--HhhcCCEEEEECCCCcC
Confidence 368899999999654 2334458999999999998776554332 11 12458899999999973
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.00 E-value=4.1e-10 Score=118.85 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=24.8
Q ss_pred ceeEEEeCCCCCCCchH-------HHHHHhhhcCeEEEEEeCCCC
Q 007929 89 EYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEG 126 (584)
Q Consensus 89 ~~~inliDTPG~~df~~-------e~~~~l~~~D~ailvvda~~g 126 (584)
...++||||||+.++.. ....+++.+|++++|+|+.++
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 36799999999875322 122456899999999999886
No 189
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.86 E-value=4.3e-09 Score=109.70 Aligned_cols=113 Identities=20% Similarity=0.256 Sum_probs=79.4
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
...|+| +|.+|+|||||+++|......+ ... .+.|++.....+.+.
T Consensus 72 ~a~V~i---vG~PNvGKSTL~n~Lt~~~~~v-~~~---------------pftT~~~~~g~~~~~--------------- 117 (376)
T 4a9a_A 72 VASVGF---VGFPSVGKSTLLSKLTGTESEA-AEY---------------EFTTLVTVPGVIRYK--------------- 117 (376)
T ss_dssp SEEEEE---ECCCCHHHHHHHHHHHSBCCCG-GGT---------------CSSCCCEEEEEEEET---------------
T ss_pred CCeEEE---ECCCCCCHHHHHHHHhCCCCcc-cCC---------------CCceeeeeeEEEEeC---------------
Confidence 347889 9999999999999995432111 111 246777777777777
Q ss_pred CceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh-----cCCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~-----~~~p~ivviNK~D~~ 155 (584)
+.++.|+||||..+ ....+...++.||++++|||+.+.+.. .+.+...+.. ...|+++++||+|+.
T Consensus 118 -~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 118 -GAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp -TEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred -CcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 88999999999864 224567788999999999999865321 1222222222 256888999999986
Q ss_pred c
Q 007929 156 F 156 (584)
Q Consensus 156 ~ 156 (584)
.
T Consensus 196 g 196 (376)
T 4a9a_A 196 G 196 (376)
T ss_dssp C
T ss_pred h
Confidence 4
No 190
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.86 E-value=6.7e-09 Score=116.94 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=52.9
Q ss_pred ceeEEEeCCCCCCC-------------chHHHHHHh-hhcCeEEEEEeCCCCCchhHH-HHHHHHHhcCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVD-------------FSSEVTAAL-RITDGALVVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~d-------------f~~e~~~~l-~~~D~ailvvda~~g~~~~t~-~~l~~~~~~~~p~ivviNK~D 153 (584)
...+.|+||||... +...+..++ ..+|.+++|+|+..+...+.. .+++.+...+.|.++|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 45799999999754 112233344 478999999999999888776 677777677899999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 229 lv~ 231 (772)
T 3zvr_A 229 LMD 231 (772)
T ss_dssp SSC
T ss_pred cCC
Confidence 973
No 191
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.75 E-value=4.1e-09 Score=114.01 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=45.4
Q ss_pred CceeEEEeCCCCCCC----chHHHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccc
Q 007929 88 NEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~d----f~~e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~ 155 (584)
.++.+.||||||... +..++....+ .+|.+++|+|+..|.. ....++.+.. .+|+ .+|+||+|..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGH 253 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCccc
Confidence 368899999999874 4444433332 6899999999999854 3333333322 3675 7999999987
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.73 E-value=5e-09 Score=101.01 Aligned_cols=136 Identities=17% Similarity=0.178 Sum_probs=69.6
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCcccccc--CCCeeeeCChhhHhhh-ccceecceEEEEeecchhhhhcccc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAER-GITIKSTGISLYYEMTDAALKSYRG 83 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~r-~~Ti~~~~~~~~~~~~~~~~~~~~~ 83 (584)
....|++ +|++|+|||||+++|+.......+.. ... ...+......++ ++++........+......+.+...
T Consensus 29 ~~~~i~i---~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 29 GTVAVNI---MGAIGSGKTLLIERTIERIGNEVKIGAMLGD-VVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp TCEEEEE---EECTTSCHHHHHHHHHHHHTTTSCEEEEECS-CCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred CceEEEE---EcCCCCCHHHHHHHHHHHhccCCeEEEEecC-CCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHH
Confidence 4568888 99999999999999987743221100 000 000011111111 3321100000000000000111011
Q ss_pred cCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 84 ~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
...++.+.+|||||..+--... -..++.+++|+|+..+... .|......+.|.++++||+|+.
T Consensus 105 --~~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 105 --KFSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp --GGTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred --hcCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 2236789999999952211100 0246789999999987532 2333233468999999999986
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=2.7e-08 Score=103.14 Aligned_cols=98 Identities=26% Similarity=0.197 Sum_probs=56.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecch-hhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~-~~~~~~~~~~~~ 87 (584)
++|+| +|.+|+|||||+++|.... ....... +.|+......+.+.... ..+.+.......
T Consensus 3 ~kI~I---VG~pnvGKSTL~n~Lt~~~-~~v~~~p---------------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~ 63 (363)
T 1jal_A 3 FKCGI---VGLPNVGKSTLFNALTKAG-IEAANYP---------------FCTIEPNTGVVPMPDPRLDALAEIVKPERI 63 (363)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHTC-------C---------------CCCCCCCSSEEECCCHHHHHHHHHHCCSEE
T ss_pred CEEEE---ECCCCCCHHHHHHHHHCCC-CcccCCC---------------CceECceEEEEecCCcccceeeeeecccce
Confidence 57888 9999999999999997643 1111111 12333322223222100 000000000001
Q ss_pred CceeEEEeCCCCCCCchH-------HHHHHhhhcCeEEEEEeCCC
Q 007929 88 NEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~-------e~~~~l~~~D~ailvvda~~ 125 (584)
....++||||||..++.. .....++.+|++++|+|+.+
T Consensus 64 ~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 64 LPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp ECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 136799999999998753 24566899999999999987
No 194
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.71 E-value=5.1e-09 Score=103.86 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=29.8
Q ss_pred hcCeEEEEEeCCCC--CchhHHHHH-HHH----HhcCCceEEEEecCccc
Q 007929 113 ITDGALVVVDCIEG--VCVQTETVL-RQA----LGERIRPVLTVNKMDRC 155 (584)
Q Consensus 113 ~~D~ailvvda~~g--~~~~t~~~l-~~~----~~~~~p~ivviNK~D~~ 155 (584)
.||++|+|+|+++. -.......| ..+ ...++|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 58999999999876 444433333 222 23578999999999986
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.68 E-value=9.1e-08 Score=101.25 Aligned_cols=112 Identities=22% Similarity=0.165 Sum_probs=68.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCCCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (584)
.|++ +|++|||||||+++|..... .+.++. ..|+......+.+. ..
T Consensus 159 ~VgL---VG~~gAGKSTLL~~Lsg~~~----------~i~~~~------ftTl~p~~G~V~~~---------------~~ 204 (416)
T 1udx_A 159 DVGL---VGYPNAGKSSLLAAMTRAHP----------KIAPYP------FTTLSPNLGVVEVS---------------EE 204 (416)
T ss_dssp SEEE---ECCGGGCHHHHHHHHCSSCC----------EECCCT------TCSSCCEEEEEECS---------------SS
T ss_pred EEEE---ECCCCCcHHHHHHHHHcCCc----------cccCcc------cceecceeeEEEec---------------Cc
Confidence 4677 99999999999999943211 111111 12333333334333 03
Q ss_pred eeEEEeCCCCCCCc-------hHHHHHHhhhcCeEEEEEeCCCCCchhHH-HHHHHHHh-----cCCceEEEEecCcccc
Q 007929 90 YLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG-----ERIRPVLTVNKMDRCF 156 (584)
Q Consensus 90 ~~inliDTPG~~df-------~~e~~~~l~~~D~ailvvda~~g~~~~t~-~~l~~~~~-----~~~p~ivviNK~D~~~ 156 (584)
..++++||||+.+. .....+.+..+|.++.|+|+. ....... ..+++... ...|.++++||+|...
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 67999999998652 233445566799999999997 2112221 22222221 2578899999999973
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.68 E-value=2.9e-08 Score=98.31 Aligned_cols=67 Identities=19% Similarity=0.039 Sum_probs=46.1
Q ss_pred ceeEEEeCCCCCCCchHH------HHHHhhhcCeEEEEEeCCCCCchhHHH-HH----HHHHhcCCceEEEEecCcccc
Q 007929 89 EYLINLIDSPGHVDFSSE------VTAALRITDGALVVVDCIEGVCVQTET-VL----RQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e------~~~~l~~~D~ailvvda~~g~~~~t~~-~l----~~~~~~~~p~ivviNK~D~~~ 156 (584)
++.+.||||||..++... +..++.. +.+|+++|+..+....... .+ ......++|.++|+||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 478999999999775432 2345555 7889999998766554432 11 222345789999999999873
No 197
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.65 E-value=3.6e-08 Score=105.00 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=44.4
Q ss_pred CceeEEEeCCCCCCCchHHHHHH------hhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAA------LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~------l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.++.+.||||||...+...+..+ +..+|.+++|+|+..|.. .....+. ....+++. +++||+|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~-f~~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKA-FNEALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHH-HHHHSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHH-HhccCCCeEEEEecCCCC
Confidence 36889999999987765554443 336789999999987732 2222232 22346644 899999986
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.61 E-value=2.4e-08 Score=103.67 Aligned_cols=60 Identities=22% Similarity=0.148 Sum_probs=37.8
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+.|+||||..+-. ......+|.+++|+|+..|...+... .. -...|.++++||+|+.
T Consensus 166 ~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~~--il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 166 GYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--RG--IIEMADLVAVTKSDGD 225 (349)
T ss_dssp TCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--HH--HHhcCCEEEEeeecCC
Confidence 6789999999965322 23357899999999998875332211 11 1356889999999997
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.58 E-value=4.5e-07 Score=96.18 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=44.7
Q ss_pred CCCceeEEEeCCCCCCC------chHHHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 86 QGNEYLINLIDSPGHVD------FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 86 ~~~~~~inliDTPG~~d------f~~e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
...++.+.||||||... +..++....+ ..|.+++|+|+..|-.. ....+...+.-.+..+++||+|..
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc
Confidence 33478899999999755 4555544333 35899999999987332 233333332223456999999987
No 200
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.55 E-value=1.2e-07 Score=97.46 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=52.5
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCC---------CC--chhHHHHHHHHHh----cCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE---------GV--CVQTETVLRQALG----ERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~---------g~--~~~t~~~l~~~~~----~~~p~ivviNK~D 153 (584)
+.++.+|||+|+..|........+.++++|+|+|.++ .. .......|..+.. .++|+++|+||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 6889999999999999999999999999999999973 11 1122334444443 4678999999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
+.
T Consensus 240 L~ 241 (340)
T 4fid_A 240 LF 241 (340)
T ss_dssp HH
T ss_pred hh
Confidence 87
No 201
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.53 E-value=4.7e-07 Score=90.39 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=70.6
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.+++++ +|+.|+|||||++.|....... .|...+ +..+. . -+.....+.+.+.. ..
T Consensus 2 ~f~v~l---vG~nGaGKSTLln~L~g~~~~~----~G~i~~-~g~~i--~--~~~~~~~i~~v~q~------------~~ 57 (270)
T 3sop_A 2 DFNIMV---VGQSGLGKSTLVNTLFKSQVSR----KASSWN-REEKI--P--KTVEIKAIGHVIEE------------GG 57 (270)
T ss_dssp EEEEEE---EESSSSSHHHHHHHHHHHHC-----------------C--C--CCCSCCEEEESCC---------------
T ss_pred eeEEEE---ECCCCCCHHHHHHHHhCCCCCC----CCcccc-CCccc--C--cceeeeeeEEEeec------------CC
Confidence 478888 9999999999999997654321 221111 00000 0 00001111111110 01
Q ss_pred CceeEEEeCCCCCCCchH------HHH------------H----------HhhhcCeEEEEEeCC-CCCchhHHHHHHHH
Q 007929 88 NEYLINLIDSPGHVDFSS------EVT------------A----------ALRITDGALVVVDCI-EGVCVQTETVLRQA 138 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~------e~~------------~----------~l~~~D~ailvvda~-~g~~~~t~~~l~~~ 138 (584)
-...++++|+||..+... .+. . ++..++++++++|.. +|..+....+++.+
T Consensus 58 ~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L 137 (270)
T 3sop_A 58 VKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHL 137 (270)
T ss_dssp -CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHH
T ss_pred CcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHH
Confidence 124689999999753110 111 1 112357889999964 89999998888887
Q ss_pred HhcCCceEEEEecCcccc
Q 007929 139 LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 139 ~~~~~p~ivviNK~D~~~ 156 (584)
.+. +++|+++||+|...
T Consensus 138 ~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 138 SKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp HTT-SEEEEEETTGGGSC
T ss_pred Hhc-CcEEEEEeccccCC
Confidence 665 88999999999874
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.52 E-value=4.5e-07 Score=96.01 Aligned_cols=124 Identities=17% Similarity=0.179 Sum_probs=64.5
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
-.++|++ +|+.|+|||||+++|+....... +.++.. .+. .-|+....+.+.+. ..
T Consensus 30 vsf~I~l---vG~sGaGKSTLln~L~g~~~~~~--~~~~~~-~~~-------~~t~~~~~i~~v~q------------~~ 84 (418)
T 2qag_C 30 FEFTLMV---VGESGLGKSTLINSLFLTDLYSP--EYPGPS-HRI-------KKTVQVEQSKVLIK------------EG 84 (418)
T ss_dssp CCEEEEE---ECCTTSSHHHHHHHHTTCCCCCC--CCCSCC-------------CCEEEEEECC----------------
T ss_pred CCEEEEE---ECCCCCcHHHHHHHHhCCCCCCC--CCCCcc-cCC-------ccceeeeeEEEEEe------------cC
Confidence 4567888 99999999999999954322111 111100 000 01111111111111 01
Q ss_pred CCceeEEEeCCCCCCCchH------HH--------HHHh-----------hh--cCeEEEEEeCC-CCCchhHHHHHHHH
Q 007929 87 GNEYLINLIDSPGHVDFSS------EV--------TAAL-----------RI--TDGALVVVDCI-EGVCVQTETVLRQA 138 (584)
Q Consensus 87 ~~~~~inliDTPG~~df~~------e~--------~~~l-----------~~--~D~ailvvda~-~g~~~~t~~~l~~~ 138 (584)
+....++++||||..++.. .+ ...+ +. ++++|++++++ .|.......+++.+
T Consensus 85 ~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L 164 (418)
T 2qag_C 85 GVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL 164 (418)
T ss_dssp --CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH
T ss_pred CcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH
Confidence 1134789999999977532 11 1111 12 34567777776 68887776666664
Q ss_pred HhcCCceEEEEecCcccc
Q 007929 139 LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 139 ~~~~~p~ivviNK~D~~~ 156 (584)
..++|+|+|+||+|+..
T Consensus 165 -~~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 165 -HEKVNIIPLIAKADTLT 181 (418)
T ss_dssp -TTTSEEEEEEESTTSSC
T ss_pred -hccCcEEEEEEcccCcc
Confidence 45889999999999873
No 203
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.52 E-value=8.4e-08 Score=99.45 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=53.5
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCc-----------hhHHHHHHHHHh----cCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----------VQTETVLRQALG----ERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~-----------~~t~~~l~~~~~----~~~p~ivviNK~D 153 (584)
+..+.+|||+|+..|........+.++++|+|+|.++-.+ ......|..+.. .++|+++|+||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 6789999999999999999999999999999999987321 222334444443 3688999999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
+.
T Consensus 272 L~ 273 (353)
T 1cip_A 272 LF 273 (353)
T ss_dssp HH
T ss_pred ch
Confidence 86
No 204
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.49 E-value=7.5e-07 Score=90.42 Aligned_cols=125 Identities=16% Similarity=0.195 Sum_probs=63.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
-.++|++ +|+.|+|||||+++|+...-... .| ... +..+ .. .|+......+... ..
T Consensus 17 ~~~~I~l---vG~nG~GKSTLl~~L~g~~~~~~---~g-i~~-~g~~--~~--~t~~~~~~~~~~q------------~~ 72 (301)
T 2qnr_A 17 FEFTLMV---VGESGLGKSTLINSLFLTDLYPE---RV-ISG-AAEK--IE--RTVQIEASTVEIE------------ER 72 (301)
T ss_dssp -CEEEEE---EEETTSSHHHHHHHHHC---------------------------------CEEEEC--------------
T ss_pred CCEEEEE---ECCCCCCHHHHHHHHhCCCccCC---CC-ccc-CCcc--cC--CcceEeeEEEEec------------CC
Confidence 4578888 99999999999999854211111 11 000 0000 00 0111111111111 01
Q ss_pred CCceeEEEeCCCCC-------CCchHHHH-------HHhhhc-------------CeEEEEEeCCC-CCchhHHHHHHHH
Q 007929 87 GNEYLINLIDSPGH-------VDFSSEVT-------AALRIT-------------DGALVVVDCIE-GVCVQTETVLRQA 138 (584)
Q Consensus 87 ~~~~~inliDTPG~-------~df~~e~~-------~~l~~~-------------D~ailvvda~~-g~~~~t~~~l~~~ 138 (584)
+....++++||||. ..|...+. ..++.+ +.++++++++. |.......+++.+
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l 152 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 152 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH
Confidence 22467999999998 33333222 333332 23666666654 5777776666664
Q ss_pred HhcCCceEEEEecCcccc
Q 007929 139 LGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 139 ~~~~~p~ivviNK~D~~~ 156 (584)
..++++++|+||.|+..
T Consensus 153 -~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 153 -HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp -TTTSCEEEEECCGGGSC
T ss_pred -HhcCCEEEEEEeCCCCC
Confidence 45678999999999873
No 205
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.46 E-value=5.9e-07 Score=93.53 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=57.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhc---ccccC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS---YRGER 85 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~---~~~~~ 85 (584)
++|+| +|++|+|||||+++|....-.+ .... +.|+........+. .+.+.. .....
T Consensus 2 ~~v~I---VG~pnvGKSTL~n~L~~~~~~v-~~~p---------------~~Ti~pn~g~~~v~--~~~l~~~~~~~~~~ 60 (368)
T 2dby_A 2 LAVGI---VGLPNVGKSTLFNALTRANALA-ANYP---------------FATIDKNVGVVPLE--DERLYALQRTFAKG 60 (368)
T ss_dssp CSEEE---ECCSSSSHHHHHHHHHHHHTTC-SSCC---------------GGGGSTTEEEEECC--CHHHHHHHHHHCBT
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCCCCcc-cCCC---------------CceeccceeeEecC--hHHHHHHHHHhccc
Confidence 46888 9999999999999997653111 0000 11232222222111 000000 00000
Q ss_pred C----CCceeEEEeCCCCCCCch-------HHHHHHhhhcCeEEEEEeCCCC
Q 007929 86 Q----GNEYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIEG 126 (584)
Q Consensus 86 ~----~~~~~inliDTPG~~df~-------~e~~~~l~~~D~ailvvda~~g 126 (584)
+ ..+..+.+|||||..++. ......++.+|++++|+|+.+.
T Consensus 61 ~~~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~ 112 (368)
T 2dby_A 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPD 112 (368)
T ss_dssp TBCCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCC
T ss_pred ccccccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCCC
Confidence 0 114679999999998753 3456678999999999999873
No 206
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.37 E-value=5.5e-07 Score=92.07 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=52.2
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCC-------CCCch----hHHHHHHHHHh----cCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI-------EGVCV----QTETVLRQALG----ERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~-------~g~~~----~t~~~l~~~~~----~~~p~ivviNK~D 153 (584)
+.++.+|||+|+..|........+.++++|+|+|.+ +.-.. .....|..+.. .++|+++|+||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 688999999999999988899999999999999765 22111 22344454443 3688999999999
Q ss_pred ccc
Q 007929 154 RCF 156 (584)
Q Consensus 154 ~~~ 156 (584)
+..
T Consensus 246 L~~ 248 (327)
T 3ohm_A 246 LLE 248 (327)
T ss_dssp HHH
T ss_pred hhh
Confidence 974
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.35 E-value=1.5e-06 Score=91.74 Aligned_cols=40 Identities=5% Similarity=0.037 Sum_probs=30.2
Q ss_pred eEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 116 GALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 116 ~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
++++++|+..|.......+++.+ ..++|+|+|+||+|...
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L-~~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKL-DSKVNIIPIIAKADAIS 190 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHT-CSCSEEEEEESCGGGSC
T ss_pred EEEEEeCCCCCCCHHHHHHHHHH-hhCCCEEEEEcchhccc
Confidence 36678888899988888887775 47889999999999873
No 208
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.32 E-value=7e-08 Score=100.90 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=67.6
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
..+|++ +|.+|+|||||+|+|+......... .... ...|.|...... .+
T Consensus 162 ~~~i~~---vG~~nvGKStliN~L~~~~~~~~~~----~~~~------~~~gtT~~~~~~--~~---------------- 210 (369)
T 3ec1_A 162 GGDVYV---VGCTNVGKSTFINRIIEEATGKGNV----ITTS------YFPGTTLDMIEI--PL---------------- 210 (369)
T ss_dssp TSCEEE---ECCTTSSHHHHHHHHHHHHHHTTCC----CEEE------ECTTSSCEEEEE--EC----------------
T ss_pred cCcEEE---EcCCCCchHHHHHHHHhhccCCccc----eeec------CCCCeEEeeEEE--Ee----------------
Confidence 346888 9999999999999998762110000 0000 012345443322 22
Q ss_pred CceeEEEeCCCCCCCch-------HHHHHHh---hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 88 NEYLINLIDSPGHVDFS-------SEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 88 ~~~~inliDTPG~~df~-------~e~~~~l---~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+..++++||||..+.. .+....+ ...|.+++++++...........+.++...+.|+++++||+|...
T Consensus 211 -~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 211 -ESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp -STTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred -CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 2248999999976432 1223333 678999999998432111111112222335678889999999873
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.30 E-value=7.1e-07 Score=93.37 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=51.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecch-hhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~-~~~~~~~~~~ 85 (584)
...+|+| +|.+|+|||||+++|....- ... ...+.|+......+.+.... ..+.......
T Consensus 21 ~~~kvgI---VG~pnvGKSTL~n~Ltg~~~-~~~---------------~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~ 81 (396)
T 2ohf_A 21 TSLKIGI---VGLPNVGKSTFFNVLTNSQA-SAE---------------NFPFCTIDPNESRVPVPDERFDFLCQYHKPA 81 (396)
T ss_dssp SCCCEEE---ECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCS
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHHCCCc-ccc---------------CCCccccCceeEEEEECCccceeeccccCcc
Confidence 4568888 99999999999999964321 111 11123444433333332100 0000000000
Q ss_pred CCCceeEEEeCCCCCCCchH-------HHHHHhhhcCeEEEEEeCCC
Q 007929 86 QGNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 86 ~~~~~~inliDTPG~~df~~-------e~~~~l~~~D~ailvvda~~ 125 (584)
......+.+|||||...+.. .....++.+|++++|||+.+
T Consensus 82 ~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 82 SKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 01134699999999987654 45678899999999999975
No 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.23 E-value=2.2e-07 Score=97.11 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=64.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCcc-ccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCCC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGII-AQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i-~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (584)
.+|++ +|.+|+|||||+|+|+...... ... .... ...|.|..... +.+.
T Consensus 161 ~~i~~---vG~~nvGKStliN~L~~~~~~~~~~~----~~~~------~~~gtT~~~~~--~~~~--------------- 210 (368)
T 3h2y_A 161 KDVYV---VGCTNVGKSTFINRMIKEFSDETENV----ITTS------HFPGTTLDLID--IPLD--------------- 210 (368)
T ss_dssp SCEEE---EEBTTSSHHHHHHHHHHHHTTSCSSC----CEEE------CCC----CEEE--EESS---------------
T ss_pred ceEEE---ecCCCCChhHHHHHHHhhhccccccc----eecC------CCCCeecceEE--EEec---------------
Confidence 56888 9999999999999998764211 000 0000 01234443322 2222
Q ss_pred CceeEEEeCCCCCCCch-------HHHHHH---hhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 88 NEYLINLIDSPGHVDFS-------SEVTAA---LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 88 ~~~~inliDTPG~~df~-------~e~~~~---l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
..+.++||||..+.. .+.... ....+.+++++|+...........+.++...+.|+++++||+|...
T Consensus 211 --~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 211 --EESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp --SSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred --CCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 238899999986532 222222 2567889999998432111111112222334678899999999874
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.22 E-value=2.6e-07 Score=95.34 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=37.6
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+.||||||..+-.. .....+|.+++|+|+..|...+. +.... ..++.++++||+|+.
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTT
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhcc
Confidence 68899999999865221 23478999999999875532110 00000 124668888999964
No 212
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.17 E-value=5.1e-06 Score=88.33 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=43.7
Q ss_pred CceeEEEeCCCCCCCchHHHHHHh------hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCC-c-eEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVCVQTETVLRQALGERI-R-PVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l------~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~-p-~ivviNK~D~~ 155 (584)
.++.+.||||||...........+ ..+|.+++|+|+..|. ......+. ....+ | ..+++||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~-~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKA-FKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHH-HHTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHH-HhhcccCCeEEEEeCCCCc
Confidence 468899999999876433333222 2579999999998874 22223332 33456 7 56999999986
No 213
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.15 E-value=4.5e-06 Score=84.42 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=44.4
Q ss_pred CceeEEEeCCCCCCC--chHHHH------HHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccc
Q 007929 88 NEYLINLIDSPGHVD--FSSEVT------AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~d--f~~e~~------~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~ 155 (584)
.++.+.||||||... ...... ..+..+|.+++|+|+..| .......+... ..+++ .+++||+|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~-~~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFN-QASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHH-HTCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHH-hhCCCCEEEEeCCCCC
Confidence 368899999999877 432222 345578999999999865 23333334332 35774 4899999986
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.14 E-value=5e-06 Score=88.13 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=42.3
Q ss_pred CceeEEEeCCCCCCCchHHHHH------HhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTA------ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~------~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~ 155 (584)
.++.+.||||||......+... ....+|.+++|+||..|-. .....+. ....+++ .+++||+|..
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~-f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALA-FKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHH-HHHSCTTEEEEEECCSSC
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHH-HHhhCCCeEEEEECCCCc
Confidence 3688999999996543332222 2234799999999998632 2233333 2334554 4899999987
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.07 E-value=9.6e-06 Score=84.96 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=59.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecch-hhhhcccccC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGER 85 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~-~~~~~~~~~~ 85 (584)
...+|+| +|++|+|||||+++|............ ++|+......+.+.... ..+.+.....
T Consensus 19 ~g~~vgi---VG~pnaGKSTL~n~Ltg~~~a~~~~~p---------------~tTi~p~~G~v~v~~~r~~~l~~~~~~~ 80 (392)
T 1ni3_A 19 NNLKTGI---VGMPNVGKSTFFRAITKSVLGNPANYP---------------YATIDPEEAKVAVPDERFDWLCEAYKPK 80 (392)
T ss_dssp SCCEEEE---EECSSSSHHHHHHHHHHSTTTSTTCCS---------------SCCCCTTEEEEEECCHHHHHHHHHHCCS
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHHCCCcccccCCC---------------ceeecceeeeeeeCCcchhhhhhhcccc
Confidence 3467888 999999999999999764321111111 13344333333332100 0000000000
Q ss_pred CCCceeEEEeCCCCCCC-------chHHHHHHhhhcCeEEEEEeCCC
Q 007929 86 QGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 86 ~~~~~~inliDTPG~~d-------f~~e~~~~l~~~D~ailvvda~~ 125 (584)
..-+..+.++||||... +.......++.+|+++.|+|+.+
T Consensus 81 ~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 81 SRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00124689999999654 34467778899999999999975
No 216
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.98 E-value=1.6e-05 Score=75.82 Aligned_cols=84 Identities=17% Similarity=0.300 Sum_probs=62.3
Q ss_pred CCCCeEEEEEeeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCE
Q 007929 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNT 443 (584)
Q Consensus 364 ~~~pl~~~VfK~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdI 443 (584)
.++||...|..++. ..|+ +..+||.+|+|++||.|.+++.+ .+ .+|.+|. ....++++|.|||.
T Consensus 3 ~~~p~rl~v~~v~~--g~G~-v~~G~v~~G~i~~Gd~v~i~P~~----~~-----~~V~~I~----~~~~~~~~A~aGd~ 66 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGT-VVLGKLESGSICKGQQLVMMPNK----HN-----VEVLGIL----SDDVETDTVAPGEN 66 (204)
T ss_dssp ----CBEEEEEEEE--SSSE-EEEEECCBSCEESSCCEEETTTT----EE-----EEEEEEC----SSSSCBSEECTTSE
T ss_pred CCCCEEEEEEEEEc--CCCE-EEEEEEecCEEECCCEEEECCCC----CE-----EEEEEEE----ECCEEeEEECCCCE
Confidence 46899998888765 4688 99999999999999999987543 22 4777776 33478999999999
Q ss_pred EEE--EccCcccccce-EeccCC
Q 007929 444 VAM--VGLDQYITKNA-TLTNEK 463 (584)
Q Consensus 444 vav--~gl~~~~~~tg-Tl~~~~ 463 (584)
|++ .|++..-...| +|++++
T Consensus 67 V~l~L~gi~~~di~rG~vl~~~~ 89 (204)
T 3e1y_E 67 LKIRLKGIEEEEILPGFILCDPN 89 (204)
T ss_dssp EEEEEEESSSSCCCTTCEEBCSS
T ss_pred EEEEEcCCCHHHCccceEEECCC
Confidence 999 67764323667 888865
No 217
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.92 E-value=2.3e-05 Score=74.02 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=51.7
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc-----CCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~-----~~p~ivviNK~D~~ 155 (584)
.|.+.|||||+... ..+..++..+|.+|+++.+...- ..+...++.+.+. ++++.+++|++|..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 58899999999873 67788999999999999998777 7777777776543 35667999999964
No 218
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.86 E-value=1e-05 Score=88.86 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=60.4
Q ss_pred ccceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhccccc
Q 007929 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (584)
Q Consensus 5 ~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~ 84 (584)
......|+| +|.+|+|||||+|+|++....+. ..+. + ++.|.. ...|..+ .
T Consensus 35 ~~~~~~Vai---vG~pnvGKStLiN~L~g~~~~~~--~~~t-t----------~~~T~g----i~~~~~~---------~ 85 (592)
T 1f5n_A 35 TQPMVVVAI---VGLYRTGKSYLMNKLAGKKKGFS--LGST-V----------QSHTKG----IWMWCVP---------H 85 (592)
T ss_dssp CSBEEEEEE---EEBTTSSHHHHHHHHTTCSSCSC--CCCS-S----------SCCCCS----EEEEEEE---------C
T ss_pred cCCCcEEEE---ECCCCCCHHHHHHhHcCCCCccc--cCCC-C----------CCceeE----EEEeecc---------c
Confidence 345677888 99999999999999975533221 1110 0 111111 1122100 0
Q ss_pred CCCCceeEEEeCCCCCCCchH------HHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHH
Q 007929 85 RQGNEYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIEGVCVQTETVLRQA 138 (584)
Q Consensus 85 ~~~~~~~inliDTPG~~df~~------e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~ 138 (584)
....+..+.||||||..+... ....++...-..++|+|+..++..+...++..+
T Consensus 86 ~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 86 PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp SSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHH
T ss_pred ccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHH
Confidence 012267899999999875432 122233332233788898888888877766544
No 219
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.76 E-value=2.4e-05 Score=75.10 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=65.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCC------hhhHhhhccceecceEEEE----eecchh
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDT------RQDEAERGITIKSTGISLY----YEMTDA 76 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~------~~~E~~r~~Ti~~~~~~~~----~~~~~~ 76 (584)
+.++|++ +|++|+|||||+++|+.......+. . +...|. ...+.. +. ..+.+. +.....
T Consensus 37 ~~~~i~i---vG~~gvGKTtl~~~l~~~~~~~~~~--~-~i~~d~~~~~d~~~~~~~-~~----~~~~~~~~~~~~l~~~ 105 (226)
T 2hf9_A 37 GVVAFDF---MGAIGSGKTLLIEKLIDNLKDKYKI--A-CIAGDVIAKFDAERMEKH-GA----KVVPLNTGKECHLDAH 105 (226)
T ss_dssp TCEEEEE---EESTTSSHHHHHHHHHHHHTTTCCE--E-EEEEETTTHHHHHHHHTT-TC----EEEEEECTTCSSCCHH
T ss_pred CCeEEEE---EcCCCCCHHHHHHHHHHHhccCCeE--E-EEECCCCCCccHHHHHhc-CC----cEEEecCCceEeccHH
Confidence 4578999 9999999999999998764321110 0 001111 111110 11 011111 000000
Q ss_pred hhhcccccCCCCceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 77 ALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 77 ~~~~~~~~~~~~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
...+........+..+.++||+|....... .-...+..+.|+|+..+....... .. ..+.|.++++||+|+.
T Consensus 106 ~~~~~~~~l~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~~-~~---~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 106 LVGHALEDLNLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEKH-PG---IMKTADLIVINKIDLA 177 (226)
T ss_dssp HHHHHHTTSCGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTTC-HH---HHTTCSEEEEECGGGH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhhh-hh---HhhcCCEEEEeccccC
Confidence 001111111223567999999995321100 012345678888876554322211 11 1367899999999986
No 220
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.73 E-value=1.6e-05 Score=82.51 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=46.5
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-----------chhHHHHHHHHHh----cCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-----------~~~t~~~l~~~~~----~~~p~ivviNK~D 153 (584)
+..+.+|||+|+..|........+.++++|+|+|.++-. .......|..+.. .++|+|+|+||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 688999999999999988888999999999999998731 1122344555443 3678999999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
+.
T Consensus 280 L~ 281 (362)
T 1zcb_A 280 LL 281 (362)
T ss_dssp HH
T ss_pred hh
Confidence 86
No 221
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.68 E-value=6.9e-05 Score=76.45 Aligned_cols=65 Identities=22% Similarity=0.348 Sum_probs=40.9
Q ss_pred CceeEEEeCCCCCCCchHHHHHHh------------hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCcc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAAL------------RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDR 154 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l------------~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~ 154 (584)
.+|.+.||||||...........+ ..+|.+++|+|+..| ..+....+. .....++. +++||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~-~~~~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEE-FSKVADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHH-HTTTSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHH-HhhcCCCcEEEEeCCCC
Confidence 368899999999866432222222 137899999999865 222222222 22345555 89999997
Q ss_pred c
Q 007929 155 C 155 (584)
Q Consensus 155 ~ 155 (584)
.
T Consensus 267 ~ 267 (320)
T 1zu4_A 267 T 267 (320)
T ss_dssp C
T ss_pred C
Confidence 5
No 222
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.63 E-value=5.6e-05 Score=79.27 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=52.5
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCC----------CCchh-HHHHHHHHHh----cCCceEEEEecCc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------GVCVQ-TETVLRQALG----ERIRPVLTVNKMD 153 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~----------g~~~~-t~~~l~~~~~----~~~p~ivviNK~D 153 (584)
+..+.+|||+|+..|........+.++++|+|+|.++ --... ....|..+.. .++|++||.||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 6889999999999999999999999999999999987 21122 2233344433 3678899999999
Q ss_pred cc
Q 007929 154 RC 155 (584)
Q Consensus 154 ~~ 155 (584)
+.
T Consensus 296 L~ 297 (402)
T 1azs_C 296 LL 297 (402)
T ss_dssp HH
T ss_pred hh
Confidence 86
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.58 E-value=0.00014 Score=76.67 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=67.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcCccccccCCCeeeeCChhhHhhhccceecceEEEEeecchhhhhcccccCC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~r~~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 86 (584)
....|++ +|+.|+|||||++.|++. .. ...|. ...+..+. |.. .. .+..
T Consensus 68 ~~~~val---vG~nGaGKSTLln~L~Gl---~~-p~~Gs-I~~~g~~~------t~~-~~---v~q~------------- 116 (413)
T 1tq4_A 68 SVLNVAV---TGETGSGKSSFINTLRGI---GN-EEEGA-AKTGVVEV------TME-RH---PYKH------------- 116 (413)
T ss_dssp CCEEEEE---EECTTSSHHHHHHHHHTC---CT-TSTTS-CCCCC----------CC-CE---EEEC-------------
T ss_pred CCeEEEE---ECCCCCcHHHHHHHHhCC---CC-ccCce-EEECCeec------cee-EE---eccc-------------
Confidence 3347888 999999999999999652 11 11221 11111110 100 11 1110
Q ss_pred CCceeEEEeCCCCCCC---chHHHHHH--hhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 87 GNEYLINLIDSPGHVD---FSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 87 ~~~~~inliDTPG~~d---f~~e~~~~--l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
.....++++|+||... -..+.... +...|..++ +|+.. .+.|...+.+.+...+.|+++++||.|...
T Consensus 117 ~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 117 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDI 189 (413)
T ss_dssp SSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHH
T ss_pred cccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccc
Confidence 0022588999999642 12233222 233354444 77654 467777777777777899999999999874
No 224
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.54 E-value=8e-05 Score=78.75 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=40.8
Q ss_pred CceeEEEeCCCCCCCchHHHHH------HhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTA------ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~------~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~ 155 (584)
.++.+.||||||.......... .+..+|.+++|+|+..|. ......+.. ...+++ -+++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f-~~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAF-DEKVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHH-HHHTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHH-HhcCCceEEEEeCcCCc
Confidence 4688999999997654322221 223588999999998662 222222322 224554 4899999975
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.54 E-value=5.3e-05 Score=75.94 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHc
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
+.++|++ +|.+|+|||||+|+|+...
T Consensus 119 ~~~~v~~---vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALI---IGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEE---EESTTSSHHHHHHHHHTSC
T ss_pred CCceEEE---EecCCCchHHHHHHHhcCc
Confidence 4578888 9999999999999997543
No 226
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.53 E-value=4e-05 Score=73.20 Aligned_cols=65 Identities=11% Similarity=-0.025 Sum_probs=50.9
Q ss_pred ceeEEEeCCCCC-CCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh-cCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-ERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~-~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~-~~~p~ivviNK~D~~ 155 (584)
.|.+.+||||+. .. ..+..++..+|.+|+++.+...-...+...++.+.+ .+.+..+++|+.|..
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 688999999997 54 356778899999999999876655666666666555 266777999999875
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.42 E-value=0.00043 Score=76.83 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=39.1
Q ss_pred eeEEEeCCCCCCCc---------hHHHHHH----hhhc-CeEEEEEeCCCCCchh-HHHHHHHHHhcCCceEEEEecCcc
Q 007929 90 YLINLIDSPGHVDF---------SSEVTAA----LRIT-DGALVVVDCIEGVCVQ-TETVLRQALGERIRPVLTVNKMDR 154 (584)
Q Consensus 90 ~~inliDTPG~~df---------~~e~~~~----l~~~-D~ailvvda~~g~~~~-t~~~l~~~~~~~~p~ivviNK~D~ 154 (584)
-.+.++|.||...- ...+... +... ..+++++++......+ ...+++.+...+.+.|+|+||+|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 45899999985431 1122222 2222 4566677765554332 234555555567889999999999
Q ss_pred cc
Q 007929 155 CF 156 (584)
Q Consensus 155 ~~ 156 (584)
..
T Consensus 227 v~ 228 (608)
T 3szr_A 227 VD 228 (608)
T ss_dssp SS
T ss_pred cC
Confidence 73
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.39 E-value=0.00025 Score=75.89 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=37.6
Q ss_pred ceeEEEeCCCCCCCchH----HH---HHHhh-----hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSS----EV---TAALR-----ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~----e~---~~~l~-----~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+.||||+|...... +. .+.++ ..+-++||+|+..|-.. ...++...+.--...+++||+|..
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~itgvIlTKLD~t 451 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGLTGITLTKLDGT 451 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTCCSEEEEECGGGC
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcCCCEEEEEcCCCc
Confidence 56788999999854322 22 22222 14568999999877321 222333222212345899999975
No 229
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.38 E-value=0.0001 Score=76.29 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=50.3
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCC-------C--Cc-h-hHHHHHHHHHh----cCCceEEEEecC
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------G--VC-V-QTETVLRQALG----ERIRPVLTVNKM 152 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~-------g--~~-~-~t~~~l~~~~~----~~~p~ivviNK~ 152 (584)
+...+.+|||+|+..|........+.++++|+|+|.++ . .. . .....|..+.. .++|+++|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 36889999999999999999999999999999999872 1 11 1 12233444443 367889999999
Q ss_pred ccc
Q 007929 153 DRC 155 (584)
Q Consensus 153 D~~ 155 (584)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 986
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.36 E-value=0.00015 Score=74.21 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=39.8
Q ss_pred ceeEEEeCCCCCCC----chHHHHHH--hhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVD----FSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~d----f~~e~~~~--l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+.++||+|... +..+.... .-..|-.++++|+..|- +....++...+..-.-.+++||+|..
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 45677899999754 33333221 12468899999988773 33333333332223347899999975
No 231
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.25 E-value=0.00014 Score=70.60 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=48.4
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCcc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDR 154 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~ 154 (584)
..|.+.|||||+.... .+..++..+|.+|+|+++...-......+.+.+.+.+++. .+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 3688999999997654 5677889999999999986544444555555555567664 489999984
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.24 E-value=0.00012 Score=72.38 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
++|++ +|.+|+|||||+++|...
T Consensus 100 ~~v~~---vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLI---VGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEE---EESTTSSHHHHHHHHHTT
T ss_pred hheEE---eCCCCCCHHHHHHHHhcc
Confidence 57888 999999999999999743
No 233
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.17 E-value=0.0016 Score=63.77 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=46.1
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH---h---cCCceE-EEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---G---ERIRPV-LTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~---~---~~~p~i-vviNK~D~~ 155 (584)
..|.+.|||||+... .....++..||.+|+|+.+...-...+...++.+. + .+++++ +++|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS--PLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCC--HHHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCC--HHHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 578999999999765 34567888999999999986543333333333322 1 256665 899999864
No 234
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.12 E-value=0.0013 Score=66.50 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=38.6
Q ss_pred ceeEEEeCCCCCCCchHHHH-------HHh-----hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVT-------AAL-----RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~-------~~l-----~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.+.++||+|..+...... .++ ...+.+++++|+..|.... ..++...+..-..++++||.|..
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~--~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL--EQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH--HHHHHHHHHHCCSEEEEECTTSS
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH--HHHHHHHHHcCCcEEEEECCccc
Confidence 34567999999754332211 111 1256789999998875322 22333333222467899999976
No 235
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.11 E-value=0.00085 Score=67.69 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=46.6
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCceE-EEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~----~~~p~i-vviNK~D~~ 155 (584)
..|.+.|||||+.... ..+..++..||.+|+|+++...-...+..+++.+.. .+++++ +|+|+.+..
T Consensus 155 ~~yD~ViiD~p~~~~~-~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~ 226 (307)
T 3end_A 155 DDTDVVIFDVLGDVVC-GGFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT 226 (307)
T ss_dssp SSCSEEEEEECCSSCC-GGGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC
T ss_pred ccCCEEEEeCCCccch-HHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH
Confidence 3689999999987653 234457899999999998765433444455555443 345655 899999853
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.11 E-value=0.00032 Score=71.01 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=38.2
Q ss_pred ceeEEEeCCCCCCCchHHHHH-------Hh-----hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTA-------AL-----RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~-------~l-----~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
++.+.|+||||.......... .+ ...|.+++|+|+..| .......+...+ ..++. +++||+|..
T Consensus 186 ~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~-~~~i~gvVlTk~D~~ 262 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKE-AVNVTGIILTKLDGT 262 (306)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHH-HSCCCEEEEECGGGC
T ss_pred CCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHh-cCCCCEEEEeCCCCc
Confidence 677999999997544333321 22 136889999999744 112222222222 24443 788999986
No 237
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.05 E-value=0.0014 Score=65.83 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=39.6
Q ss_pred ceeEEEeCCCCCCCchHHHHHH----h--hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAA----L--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~----l--~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
++.+.||||||........... . ..+|.+++|+|+..+ ..+....+... ..+++. +++||+|..
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~-~~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGD 250 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHH-HHTCCCEEEEECGGGC
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHh-hcCCCCEEEEECCCCC
Confidence 6789999999875432222222 2 258899999998754 22222233322 235544 899999976
No 238
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.94 E-value=0.0013 Score=64.78 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=48.1
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc--CCceEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~--~~p~ivviNK~D~~ 155 (584)
..|.+.|||||+... ..+..++..||.+|+|+.+...-......+++.+.+. +.++.+++|+.++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 368899999999764 5577888899999999998654444444555555444 44666999999554
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.91 E-value=0.00064 Score=68.49 Aligned_cols=64 Identities=11% Similarity=0.160 Sum_probs=38.3
Q ss_pred ceeEEEeCCCCCCCchHHHH----HHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCce-EEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVT----AALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~----~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~-ivviNK~D~~ 155 (584)
++.+.|+||||......... ..+. ..|.+++|+|++.+.. ....+.+... .++. -+++||+|..
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~--~l~~~giVltk~D~~ 252 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFS--SVPVNQYIFTKIDET 252 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTS--SSCCCEEEEECTTTC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHh--cCCCCEEEEeCCCcc
Confidence 67899999999876543322 2222 3578899999987632 1111212111 2333 3778999986
No 240
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.89 E-value=0.00039 Score=70.21 Aligned_cols=63 Identities=14% Similarity=0.024 Sum_probs=49.9
Q ss_pred eEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCC-chhHHHHH-HHHHhcCCceEEEEecCccc
Q 007929 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVL-RQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 91 ~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~-~~~t~~~l-~~~~~~~~p~ivviNK~D~~ 155 (584)
.+.+||| ++.|......+++.+|++|+|+|+++.. ......-| ..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899999 8888888888999999999999999764 23322333 33344688999999999997
No 241
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.56 E-value=0.0019 Score=64.43 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=43.9
Q ss_pred EeCCCCCC-CchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 94 LIDSPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 94 liDTPG~~-df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+=+-|||. ....++...+..+|+++.|+||.++.......+ .... .++|+++++||+|+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l-~~~l-~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMI-EDIL-KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHH-HHHC-SSSCEEEEEECGGGSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHH-HHHH-CCCCEEEEEECcccCC
Confidence 44679997 466788999999999999999999877654333 3322 5789999999999973
No 242
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.50 E-value=0.0079 Score=63.78 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
....|+| +|..++|||||+|+|+..
T Consensus 66 ~v~vVsV---~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSV---AGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEE---EESTTSSHHHHHHHHHHH
T ss_pred ceEEEEE---ECCCCCcHHHHHHHHhhh
Confidence 4456777 999999999999999976
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.35 E-value=0.0072 Score=60.87 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=38.8
Q ss_pred eeEEEeCCCCCCCchHHHH-------HHhh-----hcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVT-------AALR-----ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~-------~~l~-----~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+...++||.|..++..... .++. ..+-.++|+|++.|...... ++...+..-..+++++|+|-.
T Consensus 184 ~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 184 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCCCEEEEECCSSC
T ss_pred CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCCCEEEEeCCCCC
Confidence 3467899999866443221 1211 24566999999888655543 233332222356889999976
No 244
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.97 E-value=0.015 Score=56.94 Aligned_cols=67 Identities=21% Similarity=0.045 Sum_probs=51.4
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCcc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDR 154 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~ 154 (584)
..|.+.|||||+..........++..+|.+|+|+.+...-...+...++.+.+.+++.+ +++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 46899999999976543333334457999999999887766667777777767788887 89999984
No 245
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.85 E-value=0.0046 Score=61.01 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=39.6
Q ss_pred CCCCCc-hHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 98 PGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 98 PG~~df-~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
|||... ..++...+..+|.++.|+||.++.......+ . .. ++|+++++||+|+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~-ll--~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-D-FS--RKETIILLNKVDIAD 60 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-C-CT--TSEEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-H-hc--CCCcEEEEECccCCC
Confidence 898754 3588899999999999999998766543222 1 12 889999999999973
No 246
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.81 E-value=0.013 Score=60.31 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=38.5
Q ss_pred eeEEEeCCCCCCCchHHHH-------HHh-----hhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 90 YLINLIDSPGHVDFSSEVT-------AAL-----RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 90 ~~inliDTPG~~df~~e~~-------~~l-----~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+...++||.|...+..... .++ ...+-+++|+|++.|...... .+...+..-..+++++|+|-.
T Consensus 241 ~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 241 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCCCEEEEESCTTC
T ss_pred CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCCeEEEEecCccc
Confidence 3467899999866433221 111 124567999998888655433 233232222356889999976
No 247
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.53 E-value=0.0056 Score=61.69 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=41.5
Q ss_pred CCCchHHHHHHhhhcCeEEEEEeCCCCC-chhH-HHHHHHHHhcCCceEEEEecCccc
Q 007929 100 HVDFSSEVTAALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 100 ~~df~~e~~~~l~~~D~ailvvda~~g~-~~~t-~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
++.|......+++.+|++++|+|+.+.. .... .+.+..+...++|+++|+||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 5555555556889999999999999764 4433 233344456789999999999997
No 248
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.40 E-value=0.033 Score=52.68 Aligned_cols=72 Identities=4% Similarity=-0.067 Sum_probs=39.3
Q ss_pred eeEEEeCCC------CCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH---HHHh-----cCCceEEEEecC-cc
Q 007929 90 YLINLIDSP------GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR---QALG-----ERIRPVLTVNKM-DR 154 (584)
Q Consensus 90 ~~inliDTP------G~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~---~~~~-----~~~p~ivviNK~-D~ 154 (584)
.++-.--+| |+..+......+...+|++|+|||+.+.-......-+. .+.. .++|++|+.||. |.
T Consensus 96 ~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDl 175 (227)
T 3l82_B 96 NKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD 175 (227)
T ss_dssp ---------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTT
T ss_pred hhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCc
Confidence 345555666 67777788899999999999999998763333443332 2221 367888999995 67
Q ss_pred ccccccCCHH
Q 007929 155 CFLELQVDGE 164 (584)
Q Consensus 155 ~~~~~~~~~~ 164 (584)
+. .+++.
T Consensus 176 p~---Ams~~ 182 (227)
T 3l82_B 176 VK---RMPCF 182 (227)
T ss_dssp SC---BCCHH
T ss_pred cC---CCCHH
Confidence 64 44553
No 249
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.35 E-value=0.044 Score=54.55 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=49.0
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh------cCCceE-EEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ERIRPV-LTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~------~~~p~i-vviNK~D~~ 155 (584)
..|.+.|||||+.... ....++..+|.+|+|+.+...-.......++.+.+ .+++++ +++|+.|..
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 3688999999998653 45667888999999999887655555555544432 366756 899999975
No 250
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.11 E-value=0.022 Score=54.51 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=51.2
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
..|.+.|||||+... ..+..++..+|.+|+|+++...-...+...++.+.+.+.+.+ +++|+.|..
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 468899999999765 667888999999999999875544555666666666676655 899999865
No 251
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.09 E-value=0.032 Score=55.65 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=53.5
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.|.+.|||||+.... .+.....+.+|++|+|+.+...-.......++.+.+.+.+++ +|+|++|..
T Consensus 201 ~yD~VIIDtpp~~~~-~da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAV-TDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTC-THHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcch-HHHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 578999999998654 345556778999999999987767777777788777888877 899999875
No 252
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.01 E-value=0.023 Score=55.39 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=50.5
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.|.+.|||||+... ..+..++..+|.+|+|+.+...-...+...++.+.+.+.+.+ +++|++|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 68899999998765 667888999999999999865544555566666555566665 899999875
No 253
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.83 E-value=0.045 Score=54.01 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=52.0
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.+.+.|||||+.... .+....++.+|++|+|+.+...-.......++.+.+.+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~-~d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTV-TDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTC-SHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchH-HHHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 678999999997653 334445578999999999987777777777777777788877 899999875
No 254
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.53 E-value=0.031 Score=57.85 Aligned_cols=62 Identities=16% Similarity=-0.018 Sum_probs=40.4
Q ss_pred EEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 92 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 92 inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+.-+|+| +.+|........+.+|++++|+|+.+........+.+. -.+.|+++|+||+|+..
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~--l~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRF--AADNPILLVGNKADLLP 112 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHH--CTTSCEEEEEECGGGSC
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHH--hCCCCEEEEEEChhcCC
Confidence 4445554 77888888888889999999999998654332222222 23788999999999973
No 255
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.49 E-value=0.077 Score=53.17 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=53.1
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.+.+.|||||+..... +.....+.+|.+|+|+.+...-.......++.+.+.+.+++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 5789999999986543 34445578999999999988777777777787777788877 899999875
No 256
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=94.30 E-value=0.14 Score=43.25 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=37.3
Q ss_pred CceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 382 g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
|. +.++||.+|+|++|+.| ++-+ .. .+|.+|. ...+.+++|.|||-|++.
T Consensus 48 gp-vivGrVe~G~LK~G~~V----Pg~~--~v-----g~VkSIE----~~~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 48 KD-VIIGTVESGMIGVGFKV----KGPS--GI-----GGIVRIE----RNREKVEFAIAGDRIGIS 97 (116)
T ss_dssp EE-EEEEEEEEEEEETTCEE----ECSS--CE-----EEEEEEE----ETTEEESEEETTCEEEEE
T ss_pred CC-eeEEEEeEEEEcCCCCc----CCCc--eE-----EEEEEEE----ECCcCcCCcCCCCEEEEE
Confidence 55 88889999999999998 2210 11 3566666 355789999999999984
No 257
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.20 E-value=0.072 Score=51.05 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=49.4
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcC--Cc-eEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER--IR-PVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~--~p-~ivviNK~D~~ 155 (584)
.|.+.|||||+..+ .....++..+|.+|+|+.+...-...+...++.+.+.+ .+ .-+++|+.|..
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 68899999999764 36677899999999999987555555666666665555 33 34899999875
No 258
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.99 E-value=0.023 Score=57.25 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.4
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.+++ +|++|+|||||+++|+.
T Consensus 175 ~~~l---vG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 175 TTVF---AGQSGVGKSSLLNAISP 195 (307)
T ss_dssp EEEE---EESHHHHHHHHHHHHCC
T ss_pred EEEE---ECCCCCCHHHHHHHhcc
Confidence 5677 99999999999999953
No 259
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=93.52 E-value=0.51 Score=45.85 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=45.8
Q ss_pred CceeEEEeCCCCCC-----Cc-hHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCc
Q 007929 88 NEYLINLIDSPGHV-----DF-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMD 153 (584)
Q Consensus 88 ~~~~inliDTPG~~-----df-~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D 153 (584)
..+.+.+||+||-. +. .....-+-....-+|+|+|+..|-..++...+..+...++++. +++||+.
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 36789999999853 11 1122223334567899999988866666666666667788888 8999984
No 260
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.49 E-value=0.064 Score=53.95 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=36.7
Q ss_pred HHhhhcCeEEEEEeCCCCCchhH--HHHHHHHHhcCCceEEEEecCcccc
Q 007929 109 AALRITDGALVVVDCIEGVCVQT--ETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 109 ~~l~~~D~ailvvda~~g~~~~t--~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
.++..+|.+++|+|+.++..... .+.+..+...++|+++|+||+|+..
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE 131 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCc
Confidence 46889999999999997654443 2333444567999999999999973
No 261
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.42 E-value=0.12 Score=47.63 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=32.2
Q ss_pred HHHHHHhcCCceEEEEecCccccccccCCHHHHHHHHHHHHHHHHHHHhhcc
Q 007929 134 VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYE 185 (584)
Q Consensus 134 ~l~~~~~~~~p~ivviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l~~~~ 185 (584)
.+..+.+...++|+|-|=+-.- -.+....-..|++.+..+|+.+....
T Consensus 118 ll~~l~~~~~~~vlVsNEVG~G----iVP~~~~~R~frD~~G~lnq~lA~~a 165 (180)
T 1c9k_A 118 LIAACQRCPAKVVLVTNEVGMG----IVPENRLARHFRDIAGRVNQRLAAAA 165 (180)
T ss_dssp HHHHHHHCCSEEEEECCCCCSS----CCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccCCCEEEEEccccCC----CCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 3444445566777888876443 23444555789999999999996543
No 262
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.42 E-value=0.075 Score=51.42 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=47.7
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcC---------CceEEEEecCccc
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER---------IRPVLTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~---------~p~ivviNK~D~~ 155 (584)
.|.+.|||||+... ..+..++..+|.+|+|+++...-...+..+++.+...+ .+.-+++|+.|..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 68899999999655 57788999999999999987554445555555543332 2345899999864
No 263
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.18 E-value=0.057 Score=57.76 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=20.8
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
....|++ +|.+|+||||+..+|...
T Consensus 38 ~~~~Ivl---vGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVM---VGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEE---ECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEE---ECCCCCCHHHHHHHHHHH
Confidence 3456777 999999999999999654
No 264
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=93.14 E-value=0.15 Score=50.62 Aligned_cols=59 Identities=5% Similarity=-0.023 Sum_probs=41.3
Q ss_pred CCCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHH---HHH-----hcCCceEEEEec-Ccccc
Q 007929 98 PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR---QAL-----GERIRPVLTVNK-MDRCF 156 (584)
Q Consensus 98 PG~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~---~~~-----~~~~p~ivviNK-~D~~~ 156 (584)
-|+..+......+...+|++|+|||+.+.-...+...+. .+. -.+.|++|+.|| .|.+.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 367788889999999999999999998764322333222 111 257899999997 57864
No 265
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.04 E-value=0.065 Score=53.79 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.9
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.+++ +|+.|+|||||+++|+
T Consensus 167 i~~l---~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICIL---AGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEE---ECSTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHH
Confidence 4566 9999999999999997
No 266
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.80 E-value=0.29 Score=46.11 Aligned_cols=67 Identities=10% Similarity=-0.045 Sum_probs=43.1
Q ss_pred ceeEEEeCCCCCCCc--h---HHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 89 EYLINLIDSPGHVDF--S---SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 89 ~~~inliDTPG~~df--~---~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.|.+.||||||...- . ....-+....+.+|+|+++..+-..++...++.+...+++++ +++|++|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 688999999986531 1 111112222235888888865544555566666666678877 899999864
No 267
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.80 E-value=0.052 Score=49.83 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=19.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
.++| +|++|||||||++.|+...
T Consensus 7 ~i~i---~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVL---LGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHhhC
Confidence 4667 9999999999999997653
No 268
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.66 E-value=0.06 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.4
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+++| +|+.|+|||||++.|....+
T Consensus 2 ~i~l---~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIII---TGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHHG
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5677 99999999999999976554
No 269
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.53 E-value=0.08 Score=47.95 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=21.2
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.-.|++ +|++|||||||+..|....|
T Consensus 8 g~~i~l---~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVL---MGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEE---ECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEE---EcCCCCCHHHHHHHHHHhhC
Confidence 346777 99999999999999966544
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.53 E-value=0.058 Score=50.41 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.++| +|+.|||||||++.|+..
T Consensus 6 ~i~l---vGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVL---SGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhh
Confidence 5677 999999999999999754
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.12 E-value=0.073 Score=50.01 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=20.2
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHH
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
...|+| +|++|||||||++.|...
T Consensus 22 g~~v~I---~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVAL---SGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEE---ECCTTSCTHHHHHHHHHH
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHHH
Confidence 457788 999999999999999543
No 272
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.00 E-value=0.074 Score=49.01 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=18.8
Q ss_pred EEecccccCCCCChhHHHHHHHHHc
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
+++ +|+.|||||||++.|+...
T Consensus 4 i~l---~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVI---SGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEE---ESSSSSSHHHHHHHHHHHC
T ss_pred EEE---ECCCCCCHHHHHHHHHhhC
Confidence 566 9999999999999997543
No 273
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.97 E-value=0.075 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=18.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-++| +|+.|||||||++.|...
T Consensus 22 i~~l---~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVL---SGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhh
Confidence 4667 999999999999999654
No 274
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.97 E-value=0.076 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=19.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
-|++ +|+.|||||||++.|....
T Consensus 9 ii~l---~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFII---SAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHS
T ss_pred EEEE---ECcCCCCHHHHHHHHHhhC
Confidence 4667 9999999999999997653
No 275
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.66 E-value=0.25 Score=49.76 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=26.8
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCC
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 124 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~ 124 (584)
..+.+.++|+||-.....- ..++..||.+|+|+.+.
T Consensus 162 d~~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e 197 (314)
T 3fwy_A 162 DDTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND 197 (314)
T ss_dssp SSCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS
T ss_pred hcCceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc
Confidence 3678899999987543322 35688899999999875
No 276
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=91.52 E-value=0.099 Score=51.80 Aligned_cols=35 Identities=26% Similarity=0.136 Sum_probs=30.3
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCC
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~ 125 (584)
.|.+.|||||+.. ...+..++..||.+|+|+.+..
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 6889999999986 4678889999999999999853
No 277
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.46 E-value=0.096 Score=47.20 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=19.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
.+++ +|+.|||||||++.|....
T Consensus 35 ~v~L---~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYL---NGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhC
Confidence 4677 9999999999999996653
No 278
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.45 E-value=0.091 Score=49.88 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.5
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
.++| +|+.|||||||++.|+...
T Consensus 25 ~~~l---vGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVI---CGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEE---ECSTTSSHHHHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHHhhC
Confidence 4667 9999999999999997643
No 279
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.24 E-value=0.1 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
-++| +|+.|||||||++.|+...
T Consensus 18 ii~l---~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIV---SAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHhccC
Confidence 5667 9999999999999997654
No 280
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.11 E-value=0.097 Score=47.57 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=17.0
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
-+++ +|+.|||||||++.++
T Consensus 11 i~~l---~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVL---IGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEE---ECCTTSCHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHc
Confidence 4566 9999999999999863
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.02 E-value=0.12 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|++ .|.+||||||+++.| ...|
T Consensus 3 ~I~l---~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILI---TGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEE---ECCTTSCHHHHHHHH-HHTT
T ss_pred EEEE---ECCCCCCHHHHHHHH-HHCC
Confidence 4666 999999999999999 5544
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.01 E-value=0.093 Score=48.16 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.3
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.|++ +|++|||||||++.|..
T Consensus 11 ~i~l---~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 11 ILLL---SGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEE---EECTTSCHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHh
Confidence 4667 99999999999999954
No 283
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.99 E-value=0.12 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~ 37 (584)
.|++ +|..|||||||++.|....|.
T Consensus 31 ~i~l---~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 31 HVVV---MGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhhCC
Confidence 5777 999999999999999765553
No 284
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=90.99 E-value=0.7 Score=48.74 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=20.3
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
....|+| +|..++|||+|+|.|+..
T Consensus 66 ~v~vvsv---~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 66 EVVAVSV---AGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp BEEEEEE---EEBTTSSHHHHHHHHHHH
T ss_pred ceEEEEE---ECCCCCchhHHHHHHHHH
Confidence 4456667 999999999999988643
No 285
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.91 E-value=0.11 Score=48.75 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
-|++ +|++|||||||++.|+...
T Consensus 10 ~i~l---~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVL---SGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHST
T ss_pred EEEE---ECcCCCCHHHHHHHHHhhC
Confidence 4677 9999999999999997654
No 286
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.89 E-value=0.13 Score=46.34 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|++ +|.+|||||||++.|....+
T Consensus 6 ~i~l---~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFL---VGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEE---ECCTTSCHHHHHHHHHHHTT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5777 99999999999999965544
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.89 E-value=0.12 Score=48.43 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=20.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
-.|+| +|++|+|||||++.|+....
T Consensus 20 ~~ivl---~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVL---IGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEE---ECcCCCCHHHHHHHHHhhCC
Confidence 35677 99999999999999986543
No 288
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.65 E-value=0.27 Score=50.72 Aligned_cols=35 Identities=23% Similarity=0.139 Sum_probs=29.1
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCC
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~ 125 (584)
.+.+.|||||+.. ...+..++..||.+++|+.+..
T Consensus 259 ~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 259 NYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp CCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCCc
Confidence 6899999999544 3578889999999999988754
No 289
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.64 E-value=0.14 Score=45.86 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.1
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|+| .|.+||||||+++.|....+
T Consensus 3 ~i~l---~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIIL---EGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEE---ECSSSSSHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4667 99999999999999966544
No 290
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.64 E-value=0.12 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
..|+| +|+.|||||||++.|...
T Consensus 7 ~~i~i---~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGI---AGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEE---EESTTSSHHHHHHHHHHH
T ss_pred EEEEE---ECCCCCCHHHHHHHHHHH
Confidence 46778 999999999999999654
No 291
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.59 E-value=0.14 Score=47.00 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.++| +|+.|+|||||+++|+..
T Consensus 8 ~i~i---~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAF---AAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHH
T ss_pred EEEE---EeCCCCCHHHHHHHHHHh
Confidence 4667 999999999999999754
No 292
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.50 E-value=0.14 Score=47.79 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=23.3
Q ss_pred CCccccceeeEEecccccCCCCChhHHHHHHHHH
Q 007929 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 1 ~~~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
|++...+...|++ .|.+||||||+++.|...
T Consensus 3 ~~~~~~~~~~I~l---~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 3 MTDDKKKGKFIVF---EGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp TTCCCBCSCEEEE---EESTTSSHHHHHHHHHHH
T ss_pred ccchhhcCCEEEE---EcCCCCCHHHHHHHHHHH
Confidence 3443344567888 999999999999999543
No 293
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.39 E-value=0.14 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
.|+| +|++|+|||||+++|+...
T Consensus 3 pIVi---~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVI---SGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEE---ECCTTSSHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhC
Confidence 4677 9999999999999998653
No 294
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.37 E-value=0.14 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.|++ +|++|||||||++.|...
T Consensus 8 ~i~l---~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVL---SGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHh
Confidence 5677 999999999999999654
No 295
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=90.20 E-value=0.091 Score=54.28 Aligned_cols=56 Identities=16% Similarity=-0.010 Sum_probs=38.3
Q ss_pred CCCCchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCcccc
Q 007929 99 GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 99 G~~df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~~ 156 (584)
..++|........+.+|++++|+|+.+.....- ..+... ..++|+++|+||+|+..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~-~~l~~~-~~~~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWL-PGLHRF-VGNNKVLLVGNKADLIP 110 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCC-TTHHHH-SSSSCEEEEEECGGGSC
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHH-HHHHHH-hCCCcEEEEEEChhcCC
Confidence 346788877788888899999999987321111 112221 23789999999999973
No 296
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.10 E-value=0.13 Score=49.57 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 33 ~~~i---iG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 33 FVSI---MGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEE---ECSTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCcHHHHHHHHh
Confidence 4566 9999999999999993
No 297
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.03 E-value=0.17 Score=48.73 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=21.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCc
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~ 37 (584)
-.|+| +|+.|||||||++.|...-|.
T Consensus 28 ~~i~l---~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 28 LRAVI---LGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHHhCC
Confidence 36778 999999999999999755554
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.91 E-value=0.14 Score=48.36 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=18.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.++| +|+.|||||||++.|...
T Consensus 24 ~~~l---iG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFG---LGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEE---ECCTTSSTTHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHhcC
Confidence 4677 999999999999999653
No 299
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.91 E-value=0.17 Score=46.93 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|+| +|.+|||||||+..|....|
T Consensus 20 ~I~l---~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 20 SIVV---MGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp CEEE---ECSTTSCHHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5777 99999999999999976544
No 300
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.88 E-value=0.17 Score=46.38 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=18.1
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.+++ +|+.|||||||++.|..
T Consensus 4 ii~l---~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYII---TGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHhc
Confidence 3566 99999999999999964
No 301
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.88 E-value=0.19 Score=46.46 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=22.1
Q ss_pred ccccceeeEEecccccCCCCChhHHHHHHHHH
Q 007929 3 SYCFTTISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 3 ~~~~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
....+...|+| .|..||||||+++.|...
T Consensus 3 ~~~~~~~~I~i---~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 3 HEAKHPIIIGI---TGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp ---CCCEEEEE---EECTTSCHHHHHHHHHHT
T ss_pred CcccCceEEEE---ECCCCCCHHHHHHHHHHC
Confidence 33445567888 999999999999999654
No 302
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.76 E-value=0.14 Score=49.48 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=17.7
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 26 ~~~l---iG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 26 YCVL---LGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4567 9999999999999994
No 303
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.74 E-value=0.17 Score=47.21 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.9
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHc
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
...|++ +|++|||||||++.|....
T Consensus 12 ~~~i~l---~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVV---CGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEE---ECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEE---ECCCCCCHHHHHHHHHHhC
Confidence 346777 9999999999999997654
No 304
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.71 E-value=0.18 Score=46.02 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=18.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.++| +|..|||||||+++|+..
T Consensus 6 ~i~i---~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQV---VGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHh
Confidence 4666 999999999999999653
No 305
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.64 E-value=0.14 Score=48.89 Aligned_cols=19 Identities=37% Similarity=0.321 Sum_probs=16.9
Q ss_pred eEEecccccCCCCChhHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSL 31 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~L 31 (584)
.++| +|+.|||||||++.|
T Consensus 32 ~~~i---iG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 32 FVSI---IGASGSGKSTLLYIL 50 (224)
T ss_dssp EEEE---EECTTSCHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3556 999999999999999
No 306
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.64 E-value=0.64 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=18.4
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-|.+ +|.+||||||++..|...
T Consensus 260 lIil---~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 260 VVVA---VGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EEEE---ESCTTSSHHHHHHHHTGG
T ss_pred EEEE---ECCCCCCHHHHHHHHHHh
Confidence 4556 899999999999999543
No 307
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=89.53 E-value=0.72 Score=45.61 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=24.3
Q ss_pred HHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh
Q 007929 106 EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG 140 (584)
Q Consensus 106 e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~ 140 (584)
....+++.+.+.++++|=.+.........+..+..
T Consensus 110 ~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le 144 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLD 144 (311)
T ss_dssp HHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHh
Confidence 45567777788899999887776666555555444
No 308
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.49 E-value=0.17 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.7
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.++| +|+.|||||||++.|+.
T Consensus 27 ~v~i---~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILV---TGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEE---ECSTTCSHHHHHHHHHH
T ss_pred EEEE---ECCCCccHHHHHHHHHH
Confidence 5777 99999999999999965
No 309
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.47 E-value=0.18 Score=48.55 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=21.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCc
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~ 37 (584)
..|+| +|+.|||||||++.|....|.
T Consensus 26 ~iigI---~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 26 FLIGV---SGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEEE---ECCCCCCHHHHHHHHHHHhch
Confidence 45777 999999999999999765453
No 310
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.31 E-value=0.21 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-.+++ .|++|+|||||+.++...
T Consensus 39 ~~~~l---~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTF---VGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEE---CCSSSSSHHHHHHHHHHH
T ss_pred CEEEE---ECCCCCCHHHHHHHHHHH
Confidence 45777 999999999999999643
No 311
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.28 E-value=0.22 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|++ +|.+||||||++..|....|
T Consensus 27 ~i~l---~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 27 RIFL---TGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred EEEE---EcCCCCCHHHHHHHHHHHcC
Confidence 6777 99999999999999976554
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.26 E-value=0.18 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=20.0
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
....|+| +|+.|||||||++.|..
T Consensus 89 ~g~ivgI---~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGV---AGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEE---ECCTTSCHHHHHHHHHH
T ss_pred CCEEEEE---ECCCCchHHHHHHHHHh
Confidence 3456777 99999999999999954
No 313
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.22 E-value=0.17 Score=45.68 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.3
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.|++ .|.+||||||++..|..
T Consensus 4 ~I~i---~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILT---IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHH
T ss_pred EEEE---ecCCCCCHHHHHHHHHh
Confidence 4666 99999999999999965
No 314
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.17 E-value=0.77 Score=50.33 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=32.4
Q ss_pred eEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 116 GALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 116 ~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
.+++|+.+.......+.+.+..+.+.+++.. +|+|+++-.
T Consensus 200 ~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 6899999877666777788888778888876 889999764
No 315
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.09 E-value=0.1 Score=47.73 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.5
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.|+| +|..|||||||++.|+.
T Consensus 4 ~v~I---vG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSI---VGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEE---EESCHHHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 4677 99999999999999964
No 316
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.05 E-value=0.2 Score=46.57 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=18.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.+++ +|+.|+|||||+..|...
T Consensus 3 ~i~i---~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFL---TGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEE---ESCCSSCHHHHHHHHHHH
T ss_pred EEEE---ECCCCChHHHHHHHHHhh
Confidence 3667 999999999999998654
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.02 E-value=0.2 Score=50.29 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.++| +|+.|+|||||++.|+..
T Consensus 128 ~vaI---vGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAF---IGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEE---ECSSSSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHhhh
Confidence 5777 999999999999999654
No 318
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.01 E-value=0.17 Score=49.12 Aligned_cols=21 Identities=38% Similarity=0.319 Sum_probs=18.0
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.++| +|+.|||||||++.|..
T Consensus 31 ~~~l---~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHAL---MGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHhC
Confidence 3566 99999999999999954
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.95 E-value=0.23 Score=45.81 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|+| .|..||||||++..|....+
T Consensus 2 ~I~i---~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAI---FGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHHC
T ss_pred EEEE---ECCCccCHHHHHHHHHHhcC
Confidence 4777 99999999999999976544
No 320
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=88.94 E-value=1.1 Score=36.61 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=49.2
Q ss_pred eeeecCCCCceeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEEE
Q 007929 374 KMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (584)
Q Consensus 374 K~~~~~~~g~~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav~ 447 (584)
.++..+..|. +|=++|.+|.++.+..+.++..+ ..++..++.+|- +...+|+++.+|.=|++.
T Consensus 13 ~vF~isk~g~-IAGc~V~~G~i~r~~~vRv~Rd~------~vI~eG~i~SLk----r~KddV~EV~~G~ECGi~ 75 (99)
T 1d1n_A 13 QTFKVSKVGT-IAGCYVTDGKITRDSKVRLIRQG------IVVYEGEIDSLK----RYKDDVREVAQGYECGLT 75 (99)
T ss_dssp CCCCCSSSCC-CEEEEECSSBCCSSSEEEEECSS------SEEEEEECSEEE----CSSSCCSCCBTTCEEEEE
T ss_pred EEEEcCCceE-EEEEEEEcCEEEcCCeEEEEECC------EEEEEeEEhhhc----ccccccceECCCcEEEEE
Confidence 3333456688 99999999999999999987532 123445777777 778899999999999985
No 321
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.92 E-value=0.23 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|+| +|++||||||+++.|....|
T Consensus 6 ~~i~i---~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITI---DGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46888 99999999999999966544
No 322
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.90 E-value=0.18 Score=48.61 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.5
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 33 ~~~i---~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 33 LVAV---VGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEE---ECSTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4566 9999999999999993
No 323
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.83 E-value=0.23 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|++ .|.+||||||+...|....+
T Consensus 5 ~i~l---~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIIL---NGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHSS
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 4667 99999999999999966543
No 324
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.83 E-value=0.18 Score=48.28 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=17.5
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 36 ~~~i---~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 36 LLAV---AGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEE---ECCTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4566 9999999999999993
No 325
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.76 E-value=0.18 Score=49.37 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=17.3
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 34 ~~~l---iG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 34 VISI---IGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEE---ECCTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 3566 9999999999999993
No 326
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.73 E-value=0.19 Score=49.44 Aligned_cols=20 Identities=40% Similarity=0.365 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 39 ~~~l---iG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 39 MVAI---IGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEE---ECCTTSCHHHHHHHHT
T ss_pred EEEE---ECCCCCcHHHHHHHHh
Confidence 3566 9999999999999993
No 327
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.73 E-value=0.19 Score=49.14 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=17.5
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 35 ~~~l---iG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 35 VTLI---IGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEE---ECSTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4566 9999999999999993
No 328
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.71 E-value=0.25 Score=46.33 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.4
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+|+| .|.+||||||+++.|....|
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVL---MGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5777 99999999999999966555
No 329
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.70 E-value=0.22 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
+.|++ +|..||||||+.+.|..
T Consensus 3 ~~i~l---~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGL---TGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEE---ECSTTSCHHHHHHHHHT
T ss_pred cEEEE---ECCCCCCHHHHHHHHHH
Confidence 35777 99999999999999954
No 330
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.68 E-value=0.2 Score=48.43 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=17.7
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 30 ~~~i---~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 30 IIAF---AGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEE---ECCTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4666 9999999999999994
No 331
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.67 E-value=0.19 Score=49.72 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 36 ~~~i---iGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 36 VTAI---LGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEE---ECCTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHH
Confidence 3566 9999999999999993
No 332
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.67 E-value=0.2 Score=47.92 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.8
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||+..|+
T Consensus 32 ~~~l---~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLL---TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---EeCCCCCHHHHHHHHH
Confidence 4667 9999999999999986
No 333
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.64 E-value=0.72 Score=40.33 Aligned_cols=24 Identities=29% Similarity=0.210 Sum_probs=20.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
...+|.+ .|.+|+|||+++.++-.
T Consensus 23 ~~~~vll---~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWL---YGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEE---ESSTTSSHHHHHHHHHH
T ss_pred CCCCEEE---ECCCCCCHHHHHHHHHH
Confidence 4457888 99999999999999943
No 334
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.61 E-value=0.19 Score=47.61 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 37 ~~~i---iG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 37 VVNF---HGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CEEE---ECCTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 3566 9999999999999993
No 335
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.59 E-value=0.26 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+|+| .|.+||||||+++.|....|
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVL---MGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHSS
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5777 99999999999999976554
No 336
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.52 E-value=0.2 Score=48.67 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.5
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 37 ~~~i---~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 37 VIGI---VGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEE---ECSTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4566 9999999999999993
No 337
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.51 E-value=0.21 Score=47.09 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=18.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.++| +|+.|+|||||+..|+..
T Consensus 27 ~~~l---~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEV---FGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHH
Confidence 4667 999999999999999653
No 338
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.50 E-value=0.2 Score=48.39 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 34 ~~~l---~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 34 IVTL---IGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEE---ECSTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4566 9999999999999993
No 339
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.43 E-value=0.27 Score=44.74 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.4
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|++ +|.+||||||++..|....|
T Consensus 7 ~i~l---~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 7 NIYL---IGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5777 99999999999999966544
No 340
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.37 E-value=0.22 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.+++ +|++|+|||||+++|+..
T Consensus 217 ~~~l---vG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIF---AGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHCC
T ss_pred EEEE---ECCCCccHHHHHHHHhcc
Confidence 4677 999999999999999743
No 341
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.28 E-value=0.2 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=17.9
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.++| +|+.|||||||++.|..
T Consensus 48 ~~~l---~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAI---MGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHhC
Confidence 4566 99999999999999943
No 342
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.25 E-value=0.21 Score=46.30 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.9
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.|+| +|..||||||+++.|..
T Consensus 3 ~i~i---~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGL---TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEE---EECTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCcCHHHHHHHHHH
Confidence 5778 99999999999999965
No 343
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.24 E-value=0.32 Score=44.23 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=20.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ .|.+||||||++..|....|
T Consensus 5 ~~I~l---~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIF---LGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46777 99999999999999965444
No 344
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.23 E-value=0.21 Score=48.88 Aligned_cols=20 Identities=35% Similarity=0.399 Sum_probs=17.7
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 48 ~~~i---~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 48 TCAL---VGHTGSGKSTIAKLLY 67 (260)
T ss_dssp EEEE---ECSTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4566 9999999999999994
No 345
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.23 E-value=0.25 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=19.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
..|+| +|.+|||||||+..|...
T Consensus 26 ~~i~l---~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWV---TGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHH
Confidence 46777 999999999999998544
No 346
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.13 E-value=0.21 Score=48.95 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.3
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 52 i~~l---iG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 52 VVVV---IGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEE---ECCTTSSHHHHHHHHT
T ss_pred EEEE---EcCCCCcHHHHHHHHH
Confidence 3566 9999999999999993
No 347
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.02 E-value=0.27 Score=44.39 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=20.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+|+| +|.+||||||+...|....+
T Consensus 6 ~i~i---~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVF---IGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred EEEE---EcCCCCCHHHHHHHHHHHcC
Confidence 5777 99999999999999965544
No 348
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.92 E-value=0.24 Score=45.20 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=18.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.|+| .|.+||||||+++.|...
T Consensus 3 ~I~i---~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIV---TGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEE---EECTTSCHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHH
Confidence 4677 999999999999999654
No 349
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.90 E-value=0.22 Score=48.34 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=17.5
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 28 ~~~l---iG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 28 ILHL---VGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEE---ECCTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCcHHHHHHHHh
Confidence 4566 9999999999999993
No 350
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.90 E-value=0.22 Score=48.56 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 43 i~~l---~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 43 IFGL---IGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEEE---ECCTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4566 9999999999999993
No 351
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.78 E-value=0.17 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=13.9
Q ss_pred eEEecccccCCCCChhHHHHHHH-HH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV-AA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll-~~ 34 (584)
.|++ +|+.|||||||++.|. ..
T Consensus 29 ii~l---~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVL---SSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEE---ECSCC----CHHHHHHC--
T ss_pred EEEE---ECCCCCCHHHHHHHHHhcC
Confidence 4666 9999999999999997 44
No 352
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.65 E-value=0.24 Score=48.81 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=17.5
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 47 ~~~i---~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 47 VTAL---VGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEE---ECSTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4566 9999999999999993
No 353
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.61 E-value=0.31 Score=48.44 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=20.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
+...|+| +|++|||||||++.|..
T Consensus 30 ~~~ii~I---~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFF---SGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEE---ECCTTSSHHHHHHHHHH
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHH
Confidence 4467788 99999999999998854
No 354
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.60 E-value=0.29 Score=44.47 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=17.5
Q ss_pred ccCCCCChhHHHHHHHHHcC
Q 007929 17 ANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g 36 (584)
+|+.|+|||||+++|.+..+
T Consensus 32 ~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 32 VGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EECTTSSHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999976544
No 355
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.58 E-value=0.94 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.5
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-+.| .|++|+|||||+.+++..
T Consensus 63 i~~I---~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 63 IVEI---FGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHH
Confidence 3556 899999999999999754
No 356
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.57 E-value=0.24 Score=48.58 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=17.3
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 35 ~~~l---iG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 35 CLLV---AGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEE---ECSTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCcHHHHHHHHh
Confidence 3556 9999999999999993
No 357
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.47 E-value=0.25 Score=45.48 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ .|.+||||||++..|....|
T Consensus 13 ~~I~l---~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFI---IGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEE---EECTTSSHHHHHHHHHHHHT
T ss_pred CEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46778 99999999999999976544
No 358
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.44 E-value=0.28 Score=44.67 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=19.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
..|+| .|.+||||||+++.|...
T Consensus 4 ~~I~i---~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVV---TGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEE---ECCTTSCHHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHH
Confidence 35777 999999999999999653
No 359
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=87.42 E-value=0.28 Score=49.54 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=19.8
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHH
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.+-|+| +|++|||||||++.|...
T Consensus 92 p~iigI---~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 92 PYIIGI---AGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CEEEEE---ECCTTSSHHHHHHHHHHH
T ss_pred CEEEEE---ECCCCCCHHHHHHHHHHH
Confidence 356777 999999999999998544
No 360
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.40 E-value=0.25 Score=48.91 Aligned_cols=19 Identities=37% Similarity=0.267 Sum_probs=17.1
Q ss_pred eEEecccccCCCCChhHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSL 31 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~L 31 (584)
.++| +|+.|||||||++.|
T Consensus 49 ~~~l---iG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 49 KWIL---YGLNGAGKTTLLNIL 67 (279)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 4566 999999999999999
No 361
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.39 E-value=0.3 Score=43.35 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=18.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.+++ +|+.|+|||||+.++...
T Consensus 38 ~~~l---~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYV---WGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEE---ESSSTTTTCHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHH
Confidence 5667 999999999999999654
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=87.39 E-value=0.29 Score=44.74 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=20.3
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ .|.+||||||++..|....+
T Consensus 6 ~~I~l---~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 6 ALIIV---TGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEE---EESTTSSHHHHHHHHHHHHT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 35677 99999999999999965444
No 363
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=87.38 E-value=1.1 Score=45.93 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=29.4
Q ss_pred hhhcCeEEEEEeCCCCCchhHHHH---HHHHHhcCCceEEEEecCcccc
Q 007929 111 LRITDGALVVVDCIEGVCVQTETV---LRQALGERIRPVLTVNKMDRCF 156 (584)
Q Consensus 111 l~~~D~ailvvda~~g~~~~t~~~---l~~~~~~~~p~ivviNK~D~~~ 156 (584)
+..+|.+++| |+... ......+ +..+...++|+++|+||+|+..
T Consensus 128 ~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 128 AANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCC
T ss_pred HhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 5788998866 55543 3333322 3333457999999999999973
No 364
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.37 E-value=0.25 Score=48.14 Aligned_cols=20 Identities=35% Similarity=0.386 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 33 ~~~l---~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 33 ILAV---LGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEE---ECCSSSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 3566 9999999999999993
No 365
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.20 E-value=0.36 Score=44.01 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=20.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ .|.+||||||++..|....|
T Consensus 4 ~~I~l---~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFV---LGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 45777 99999999999999965544
No 366
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=87.16 E-value=0.63 Score=47.69 Aligned_cols=35 Identities=11% Similarity=-0.028 Sum_probs=29.6
Q ss_pred ceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCC
Q 007929 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 89 ~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~ 125 (584)
.|.+.|||||+... .....++..||.+|+++.+..
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCSH
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCCh
Confidence 68999999998654 567788899999999999864
No 367
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=87.11 E-value=1 Score=46.79 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=40.8
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCCCCc-------hhHHHHHHHHHhcCCc-----eEEEEecCccc
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR-----PVLTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~g~~-------~~t~~~l~~~~~~~~p-----~ivviNK~D~~ 155 (584)
..|.+.|||||+... ..+..++..||.+|+|+.+..-.. .....+++.+.+.+.+ ++.++|+.|..
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~ 323 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGK 323 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---C
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCc
Confidence 368999999999876 567888999999999998743211 1112233333333333 24588998843
No 368
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.02 E-value=0.3 Score=45.49 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.1
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHH
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
...|+| +|.+|||||||++.|...
T Consensus 21 ~~~i~i---~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGI---SGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEE---EESTTSSHHHHHHHHHTT
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHHh
Confidence 346777 999999999999999643
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=86.97 E-value=0.21 Score=45.87 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=21.3
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
...|++ .|.+||||||++..|....|
T Consensus 9 ~~~I~l---~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFV---VGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEE---EECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 346778 99999999999999965544
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=86.92 E-value=0.37 Score=46.69 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcCc
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g~ 37 (584)
..|+| +|+.||||||++..|....|.
T Consensus 28 ~~I~I---~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 28 PVITV---DGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHHTTC
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHhcCC
Confidence 46888 999999999999999755453
No 371
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.86 E-value=0.34 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.|+| +|+.|||||||+++|+..
T Consensus 125 ~i~I---~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLV---TGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhc
Confidence 5777 999999999999999653
No 372
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.86 E-value=0.39 Score=44.51 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=20.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ .|.+||||||+++.|....+
T Consensus 5 ~~I~i---~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAF---EGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEE---EcCCCCCHHHHHHHHHHHHh
Confidence 46778 99999999999999965443
No 373
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.79 E-value=0.31 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
..|+| +|..|||||||++.|..
T Consensus 23 ~~i~i---~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGI---DGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEE---EECTTSSHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHH
Confidence 45777 99999999999999864
No 374
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.65 E-value=0.32 Score=43.10 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.7
Q ss_pred ccCCCCChhHHHHHHHHHc
Q 007929 17 ANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~ 35 (584)
+|+.|+|||||+++|.+..
T Consensus 29 ~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 7999999999999996543
No 375
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.65 E-value=0.35 Score=44.61 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=20.1
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHH
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
...|++ .|..||||||+++.|...
T Consensus 4 ~~~I~l---~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVF---EGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEE---ECCTTSSHHHHHHHHHHT
T ss_pred CcEEEE---EcCCCCCHHHHHHHHHHH
Confidence 346788 999999999999999543
No 376
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.61 E-value=0.3 Score=48.94 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=19.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
..|+| +|+.|||||||++.|...
T Consensus 81 ~iigI---~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISI---AGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEE---EECTTSSHHHHHHHHHHH
T ss_pred EEEEE---ECCCCCCHHHHHHHHHHH
Confidence 46777 999999999999999654
No 377
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=86.59 E-value=0.45 Score=44.16 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=22.2
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
++..|++ .|..||||||+.+.|-...|
T Consensus 11 ~~~iIgl---tG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGV---TGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 5677888 99999999999999965434
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.41 E-value=0.27 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
-.++| +|+.|||||||++.|+.
T Consensus 176 ~~i~i---vG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVV---AGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEE---EESSSSCHHHHHHHHHT
T ss_pred CEEEE---ECCCCCCHHHHHHHHHh
Confidence 36778 99999999999999964
No 379
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.27 E-value=0.37 Score=46.80 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|+| +|.+|||||||+..|....+
T Consensus 3 li~I---~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLI---YGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCcCHHHHHHHHHhcCC
Confidence 3566 99999999999999976554
No 380
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.27 E-value=0.42 Score=42.58 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=19.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|++ .|.+||||||++..|-...|
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYL---IGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEE---ESCTTSCHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4677 99999999999999965444
No 381
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.22 E-value=0.4 Score=43.48 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=20.6
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ .|.+|+||||++..|....+
T Consensus 12 ~~i~i---~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILL---TGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEE---ECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEE---EeCCCCCHHHHHHHHHHHhC
Confidence 45777 99999999999999965544
No 382
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.19 E-value=0.34 Score=47.47 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 32 ~~~i---~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 32 KVII---LGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEEE---ECCTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4566 9999999999999993
No 383
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=86.19 E-value=0.31 Score=48.64 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.2
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.+++ +|++|+|||||+++|..
T Consensus 171 iv~l---~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 171 ISTM---AGLSGVGKSSLLNAINP 191 (301)
T ss_dssp EEEE---ECSTTSSHHHHHHHHST
T ss_pred eEEE---ECCCCCcHHHHHHHhcc
Confidence 4567 99999999999999953
No 384
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.08 E-value=0.3 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.0
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHc
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
.-+++| +|+.|+|||||++.|....
T Consensus 170 g~k~~I---vG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAI---LGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEE---ECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEE---ECCCCCCHHHHHHHHHHHh
Confidence 347788 9999999999999996553
No 385
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.05 E-value=2.5 Score=41.92 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=19.6
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
..|.+ .|++|+|||+|+.++...
T Consensus 39 ~~vll---~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 39 EHLLL---FGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCEE---ECCTTCCCHHHHHHHHHH
T ss_pred CcEEE---ECCCCCCHHHHHHHHHHH
Confidence 46777 999999999999999544
No 386
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.93 E-value=0.33 Score=49.95 Aligned_cols=20 Identities=30% Similarity=0.228 Sum_probs=17.3
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|.
T Consensus 56 i~~I---iGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 56 IYGV---IGASGAGKSTLIRCVN 75 (366)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---EcCCCchHHHHHHHHh
Confidence 3455 9999999999999994
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.92 E-value=0.42 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
..|+| .|..||||||+++.|-.
T Consensus 5 ~~I~i---~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVAL---TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEE---ECCTTSCHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHH
Confidence 56788 99999999999999943
No 388
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.90 E-value=0.48 Score=43.29 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.4
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHH
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
...|++ +|.+||||||+...|...
T Consensus 10 ~~~I~l---~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILI---TGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CCEEEE---ECCCCCCHHHHHHHHHHh
Confidence 346778 999999999999999655
No 389
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.86 E-value=0.31 Score=49.96 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.8
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
-+++ +|+.|||||||++.|.+
T Consensus 32 ~~~l---lGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFI---IGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEE---EESTTSSHHHHHHHHHT
T ss_pred EEEE---ECCCCchHHHHHHHHhc
Confidence 3566 99999999999999943
No 390
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=85.85 E-value=1.5 Score=41.76 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=47.0
Q ss_pred CceeEEEeCCCCCC-----CchHHHHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccc
Q 007929 88 NEYLINLIDSPGHV-----DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (584)
Q Consensus 88 ~~~~inliDTPG~~-----df~~e~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~ 155 (584)
..+.+.+||+||.. +......-+-....-+|+|+++..|-..++...++.+...++++. +++|+++..
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 46889999999742 111112222233456899999988876777766677677888887 899999754
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.76 E-value=0.43 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+|++ .|.+||||||++..|....|
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIIL---LGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5777 99999999999999976544
No 392
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.71 E-value=0.39 Score=49.57 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.|+| +|+.|||||||++.|+..
T Consensus 138 ~i~i---vG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILV---TGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEE---ECSSSSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhh
Confidence 5777 999999999999999653
No 393
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.68 E-value=0.26 Score=49.98 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.8
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.++| +|+.|||||||++.|+.
T Consensus 173 ~v~i---~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 173 NVIV---CGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CEEE---EESTTSCHHHHHHHGGG
T ss_pred EEEE---ECCCCCCHHHHHHHHhC
Confidence 6778 99999999999999954
No 394
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=85.66 E-value=0.62 Score=46.95 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.2
Q ss_pred EEecccccCCCCChhHHHHHHHHH
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
+.| .|++|+|||||+.++...
T Consensus 126 iLI---~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIV---TGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEE---ECSCSSSHHHHHHHHHHH
T ss_pred EEE---EcCCCCCHHHHHHHHHHh
Confidence 456 899999999999999764
No 395
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=85.65 E-value=0.52 Score=43.56 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.2
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ .|.+||||||++..|....|
T Consensus 16 ~~I~l---~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFV---LGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 46777 99999999999999976554
No 396
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=85.63 E-value=0.5 Score=45.49 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=22.4
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+...|++ .|.+||||||++..|....|
T Consensus 28 ~~~~I~l---~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIF---LGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEE---ECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 3457888 99999999999999976554
No 397
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.62 E-value=0.44 Score=46.89 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEecccccCCCCChhHHHHHHHHHcC
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+++ .|++|+|||||+++|....+
T Consensus 47 vlL---~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLL---AGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEE---ESSTTSCHHHHHHHHHHHTT
T ss_pred EEE---ECCCCCcHHHHHHHHHHHcC
Confidence 777 99999999999999976544
No 398
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=85.61 E-value=0.35 Score=49.58 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.+++ +|+.|||||||++.|.
T Consensus 43 ~~~l---lGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 43 MVGL---LGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEE---ECSTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHh
Confidence 3556 9999999999999994
No 399
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.59 E-value=1.5 Score=40.26 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=18.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.+.+ .|++|+|||+|+.++...
T Consensus 40 ~~ll---~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLF---SGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEE---ECSTTSSHHHHHHHHHHH
T ss_pred eEEE---ECCCCCCHHHHHHHHHHH
Confidence 4777 999999999999999643
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.59 E-value=0.19 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-|+| .|..||||||+++.|...
T Consensus 2 ~I~i---~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAI---EGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEE---EEEEEEEHHHHHHHHHHH
T ss_pred EEEE---EcCCCCCHHHHHHHHHHH
Confidence 3667 999999999999999644
No 401
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=85.56 E-value=2.4 Score=43.05 Aligned_cols=67 Identities=13% Similarity=-0.021 Sum_probs=45.4
Q ss_pred cCeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccccccccCCHHHHHHHHHHHHHHHHHHH
Q 007929 114 TDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM 181 (584)
Q Consensus 114 ~D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l 181 (584)
.+++++|+-+..-....+++.+..+.+.++|+. +|+|++......... ....+..++..++++.+.+
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~-~~~~~~~~~~~l~~i~~~~ 304 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDF-CRARRELQLKRLEMIKEKF 304 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHH-HHHHHHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCch-HHHHHHHHHHHHHHHHHHc
Confidence 478899998887777788888899889999987 899998765210000 1222334556666665554
No 402
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.55 E-value=0.41 Score=43.67 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.1
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.|++ .|.+||||||+++.|..
T Consensus 2 ~I~l---~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAF---EGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 3667 99999999999999954
No 403
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.51 E-value=0.34 Score=48.21 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=17.6
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|+|||||++.|.
T Consensus 66 ~~~i---~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 66 LLAV---AGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEE---EESTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCcHHHHHHHHh
Confidence 4566 9999999999999994
No 404
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.44 E-value=0.36 Score=49.58 Aligned_cols=20 Identities=30% Similarity=0.192 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.+++ +|+.|||||||++.|.
T Consensus 31 ~~~l---lGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 31 FVAL---LGPSGCGKTTTLLMLA 50 (359)
T ss_dssp EEEE---ECSTTSSHHHHHHHHH
T ss_pred EEEE---EcCCCchHHHHHHHHH
Confidence 3566 9999999999999994
No 405
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.43 E-value=0.46 Score=43.13 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=20.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|+| .|.+||||||++..|....|
T Consensus 4 ~I~l---~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVL---VGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEE---ECSTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 3777 99999999999999965544
No 406
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.42 E-value=3.2 Score=44.61 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=20.6
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.+.+ .|++|+|||||+.++....+
T Consensus 79 ~lLL---~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 79 AAML---YGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHTT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 5667 99999999999999976654
No 407
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.32 E-value=0.39 Score=44.01 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.6
Q ss_pred EEecccccCCCCChhHHHHHHHH
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
|++ .|..||||||+++.|..
T Consensus 3 I~l---~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 3 ITF---EGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEE---ECSTTSSHHHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHHHH
Confidence 666 99999999999999954
No 408
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.26 E-value=0.5 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ .|.+||||||++..|....+
T Consensus 5 ~~I~l---~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVL---IGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 46778 99999999999999966544
No 409
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=85.19 E-value=0.49 Score=44.79 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=21.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ .|.+||||||++..|....|
T Consensus 8 ~~I~l---~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVI---MGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEE---EECTTSSHHHHHHHHHHHSS
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 46778 99999999999999976544
No 410
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.18 E-value=0.26 Score=49.40 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=17.9
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|+
T Consensus 82 ~vai---vG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 82 TLAL---VGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEE---ESSSCHHHHHHHHHHT
T ss_pred EEEE---ECCCCchHHHHHHHHH
Confidence 5677 9999999999999994
No 411
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.13 E-value=0.51 Score=43.65 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=21.3
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
...|++ .|.+||||||++..|....+
T Consensus 20 ~~~I~l---~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLL---LGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 346778 99999999999999965544
No 412
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.11 E-value=0.46 Score=44.60 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.5
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.++| +|++|+|||||+..|+..
T Consensus 25 ~~~i---~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIAL---TGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHH
T ss_pred EEEE---EcCCCCCHHHHHHHHHHH
Confidence 4566 999999999999999643
No 413
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=85.08 E-value=0.38 Score=49.47 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.+++ +|+.|||||||++.|.
T Consensus 31 ~~~l---lGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 31 FMAL---LGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCchHHHHHHHHh
Confidence 3556 9999999999999994
No 414
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.07 E-value=0.5 Score=42.29 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=19.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|++ .|.+||||||++..|-...|
T Consensus 4 ~I~l---~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFM---VGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEE---ESCTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4677 99999999999999965544
No 415
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=85.04 E-value=2.1 Score=42.83 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
..|.+ .|++|+|||+|+.++...
T Consensus 56 ~~vll---~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILF---SGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CeEEE---ECcCCCCHHHHHHHHHHH
Confidence 36777 999999999999999544
No 416
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.99 E-value=0.44 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=19.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.|+| +|+.|||||||+++|+..
T Consensus 169 ii~I---~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILV---TGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHHH
T ss_pred eEEE---ECCCCCCHHHHHHHHHhh
Confidence 4677 999999999999999764
No 417
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=84.94 E-value=0.39 Score=49.58 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.+++ +|+.|||||||++.|.
T Consensus 31 ~~~l---lGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 31 FMIL---LGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEE---ECSTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCcHHHHHHHHHH
Confidence 3556 9999999999999994
No 418
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.91 E-value=0.48 Score=43.19 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.8
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHH
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
...|++ .|.+||||||++..|...
T Consensus 13 ~~~i~l---~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWL---TGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEE---ECCTTSSHHHHHHHHHHH
T ss_pred CcEEEE---EcCCCCCHHHHHHHHHHH
Confidence 346777 999999999999999543
No 419
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.89 E-value=0.37 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=18.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.++| +|..|||||||++.|+..
T Consensus 6 v~~i---~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLL---TGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEE---EESSSSSCHHHHHHHHHS
T ss_pred EEEE---EecCCCCHHHHHHHHHhh
Confidence 3455 899999999999999865
No 420
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.87 E-value=0.57 Score=45.20 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+.+.|+| .|.+||||||+++.|....|
T Consensus 21 ~~~iI~I---~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGV---SGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEE---ECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEE---ECCCCCCHHHHHHHHHHHhh
Confidence 3456777 99999999999999966555
No 421
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.81 E-value=0.56 Score=41.92 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=20.1
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+|++ .|.+||||||+...|-...|
T Consensus 9 ~i~l---~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVL---IGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEE---ESCTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 6777 99999999999999965444
No 422
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.79 E-value=0.39 Score=49.51 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.+++ +|+.|||||||++.|.
T Consensus 39 ~~~l---lGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 39 FLVL---LGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCChHHHHHHHHH
Confidence 3556 9999999999999994
No 423
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.66 E-value=0.4 Score=49.55 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.+++ +|+.|||||||++.|.
T Consensus 31 ~~~l---lGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 31 FVVF---VGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---EcCCCchHHHHHHHHH
Confidence 3566 9999999999999994
No 424
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=84.65 E-value=0.42 Score=43.25 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=15.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|.+ .|.+||||||+++.|....+
T Consensus 7 ~I~l---~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 7 IIWI---NGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEE---ECCC----CHHHHHHHHHST
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 5677 99999999999999965444
No 425
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.62 E-value=0.79 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=17.7
Q ss_pred EEecccccCCCCChhHHHHHHHHH
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
+.| .|++|+|||||+-.+...
T Consensus 49 iiI---aG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 49 VII---GARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp EEE---EECTTSCHHHHHHHHHHH
T ss_pred EEE---EeCCCCCHHHHHHHHHHH
Confidence 455 899999999999998654
No 426
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.60 E-value=0.71 Score=43.97 Aligned_cols=41 Identities=5% Similarity=-0.079 Sum_probs=27.5
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCceEEEEecCccc
Q 007929 115 DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (584)
Q Consensus 115 D~ailvvda~~g~~~~t~~~l~~~~~~~~p~ivviNK~D~~ 155 (584)
+.-+++||-..-......+.++.+...+++++++.-..|-.
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 35578889765554444445555556788988988888864
No 427
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=84.59 E-value=0.3 Score=48.53 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=17.5
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
+.+.|+| .|.+||||||+++.|...
T Consensus 4 ~~~iIgI---tG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISV---TGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEE---ESCC---CCTHHHHHHHH
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHHH
Confidence 3456778 999999999999999643
No 428
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=84.56 E-value=0.64 Score=45.77 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=40.4
Q ss_pred CceeEEEeCCCCCCCchHH-HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHH---h-cCCceE-EEEecCcc
Q 007929 88 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQAL---G-ERIRPV-LTVNKMDR 154 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e-~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~---~-~~~p~i-vviNK~D~ 154 (584)
..|.+.||||||....... .......+|.+|+|+.+...-...+..+++.+. + .+++++ +++|+.+.
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 3689999999996432111 112336799999999876433333333333332 2 256654 88999864
No 429
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.55 E-value=0.47 Score=46.99 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=19.9
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHc
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
..|.+ +|.+||||||++..|....
T Consensus 34 ~livl---~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLL---GGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEE---ECCTTSCTHHHHHHHHHHT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHh
Confidence 35666 9999999999999997654
No 430
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=84.52 E-value=1.9 Score=44.52 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=29.9
Q ss_pred CceeEEEeCCCCCCCchHHHHHHhhhcCeEEEEEeCCC
Q 007929 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 125 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e~~~~l~~~D~ailvvda~~ 125 (584)
..|.+.|||||+... ..+..++..||.+|+|+.+..
T Consensus 243 ~~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~ 278 (398)
T 3ez2_A 243 SDYDFILVDSGPHLD--AFLKNALASANILFTPLPPAT 278 (398)
T ss_dssp TTCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSH
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCch
Confidence 368999999999875 457778899999999998743
No 431
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=84.50 E-value=0.53 Score=42.76 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|++ .|.+||||||++..|....|
T Consensus 8 ~I~l---~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFV---LGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5777 99999999999999965544
No 432
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.41 E-value=0.57 Score=44.97 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=21.9
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.+.|+| .|++||||||+++.|....|
T Consensus 9 ~~~i~i---~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAV---DGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 457888 99999999999999965544
No 433
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.40 E-value=0.59 Score=43.93 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcCc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g~ 37 (584)
.|.+ +|++||||+|++..|...-|.
T Consensus 2 ~Iil---~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVF---LGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHHCC
Confidence 4666 999999999999999776664
No 434
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.36 E-value=0.58 Score=44.54 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=22.1
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
+...|++ .|.+||||||++..|....+
T Consensus 15 ~~~~I~l---~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVL---LGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 3457888 99999999999999965544
No 435
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.29 E-value=0.47 Score=44.14 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=20.1
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHH
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
...|++ .|.+||||||+++.|...
T Consensus 9 ~~~I~l---~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVL---EGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEE---EESTTSSHHHHHHHHHHH
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHHH
Confidence 346788 999999999999999543
No 436
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=84.28 E-value=0.78 Score=44.45 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=41.0
Q ss_pred CceeEEEeCCCCCCCchHH-HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHh----cCCceE-EEEecCcc
Q 007929 88 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 154 (584)
Q Consensus 88 ~~~~inliDTPG~~df~~e-~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~----~~~p~i-vviNK~D~ 154 (584)
..|.+.||||||....... .......+|.+|+|+.+...-...+..+++.+.. .+++.+ +++|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 3688999999996532111 1122357999999999865433334344444332 255654 88999874
No 437
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.26 E-value=2 Score=43.46 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=19.6
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-.+.| .|++|+|||||+.++...
T Consensus 45 ~~vll---~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALL---YGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEE---CBCTTSSHHHHHHHHHHH
T ss_pred CcEEE---ECCCCCCHHHHHHHHHHH
Confidence 46777 999999999999999654
No 438
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.14 E-value=0.37 Score=51.97 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=18.7
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.++| +|+.|||||||+++|+.
T Consensus 262 ~i~I---~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIV---VGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEE---EESTTSSHHHHHHHHGG
T ss_pred EEEE---ECCCCCCHHHHHHHHHh
Confidence 5777 99999999999999954
No 439
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.09 E-value=0.34 Score=46.18 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=19.8
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHH
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
...|+| .|..|||||||++.|...
T Consensus 20 g~~i~i---~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLI---EGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEE---ECSTTSCHHHHHHTTGGG
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHhc
Confidence 346777 999999999999999543
No 440
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.07 E-value=0.51 Score=42.72 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=18.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
..|++ .|..||||||+++.|..
T Consensus 6 ~~i~l---~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWL---TGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHH
T ss_pred cEEEE---ECCCCCCHHHHHHHHHH
Confidence 35677 99999999999999954
No 441
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.95 E-value=0.57 Score=45.10 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.7
Q ss_pred EEecccccCCCCChhHHHHHHHHH
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
+++ +|++|+|||||+.++...
T Consensus 52 ~ll---~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLL---VGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHHHHH
Confidence 677 999999999999999654
No 442
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=83.89 E-value=0.52 Score=44.38 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ +|.+||||||++..|....+
T Consensus 6 ~~I~l---~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMI---SGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEE---EESTTSSHHHHHHHHHHHHC
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 35777 99999999999999976555
No 443
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=83.56 E-value=0.66 Score=41.64 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-.+.+ .|++|+|||||+.++...
T Consensus 44 ~~~ll---~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVL---IGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEE---ECCTTSCHHHHHHHHHHH
T ss_pred CceEE---ECCCCCCHHHHHHHHHHH
Confidence 45777 999999999999999654
No 444
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=83.49 E-value=0.57 Score=43.64 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=18.3
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.++| +|++|+|||||+..|+.
T Consensus 22 ~~~i---~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQV---YGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 4566 89999999999999976
No 445
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.41 E-value=0.65 Score=43.94 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=19.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|++ .|.+||||||+++.|....|
T Consensus 2 ~I~l---~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILI---FGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4677 99999999999999965544
No 446
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=83.36 E-value=0.6 Score=45.33 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
-.|+| +|.+|+||||+.+.|....|
T Consensus 49 ~~i~l---~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYL---VGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEE---ECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 46788 99999999999999966544
No 447
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=83.16 E-value=0.34 Score=49.52 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=17.5
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.+++ +|+.|+|||||++.|.
T Consensus 28 ~~~l---lGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 28 YFVI---LGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEEE---ECCCTHHHHHHHHHHH
T ss_pred EEEE---ECCCCccHHHHHHHHH
Confidence 3566 9999999999999994
No 448
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.12 E-value=0.58 Score=47.46 Aligned_cols=24 Identities=33% Similarity=0.254 Sum_probs=20.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|+| +|+.|+|||||...|...-+
T Consensus 42 lIvI---~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVL---MGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHTTSC
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHCC
Confidence 4677 99999999999999965543
No 449
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=82.96 E-value=0.51 Score=45.63 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=20.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ +|.+||||||++..|....+
T Consensus 33 ~~i~l---~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILL---GGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEE---ESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 46777 99999999999999976543
No 450
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.95 E-value=0.5 Score=49.07 Aligned_cols=21 Identities=38% Similarity=0.392 Sum_probs=17.9
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.++| +|+.|+|||||++.|..
T Consensus 49 ~~~l---lGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGL---LGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEE---EESTTSSHHHHHHHHHT
T ss_pred EEEE---ECCCCChHHHHHHHHhC
Confidence 4566 99999999999999953
No 451
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=82.94 E-value=0.54 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=18.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.|++ +|.+||||||++..|...
T Consensus 6 lIvl---~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIIL---TGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEEE---EcCCCCCHHHHHHHHHHH
Confidence 5677 999999999999999643
No 452
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.93 E-value=0.58 Score=48.12 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=16.2
Q ss_pred ccCCCCChhHHHHHHHHH
Q 007929 17 ANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~ 34 (584)
+|+.|||||||++++.+.
T Consensus 29 ~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 29 EGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 899999999999998644
No 453
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.87 E-value=0.75 Score=46.69 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|+| +|++|||||||+..|....+
T Consensus 8 ~lI~I---~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVI---VGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEE---ECCCcCcHHHHHHHHHHHcC
Confidence 35777 99999999999999976654
No 454
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=82.75 E-value=2.3 Score=43.58 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-+.| .|++|+|||||+-+++..
T Consensus 76 li~I---~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 76 ITEI---YGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHH
T ss_pred EEEE---EcCCCCChHHHHHHHHHH
Confidence 3555 899999999999998754
No 455
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=82.59 E-value=0.73 Score=43.26 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.0
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
..|++ .|.+||||||++..|....|
T Consensus 6 ~~I~l---~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLIL---IGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEE---EECTTSSHHHHHHHHHHHHC
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46788 99999999999999965544
No 456
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.40 E-value=0.63 Score=45.98 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.3
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-++| +|++|+|||||+..|...
T Consensus 37 ~~~i---~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMV---TSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHH
T ss_pred EEEE---EeCCCCCHHHHHHHHHHH
Confidence 4566 899999999999998643
No 457
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=82.11 E-value=0.61 Score=49.57 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.++| +|+.|||||||++.|...
T Consensus 140 ~v~I---vGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVI---VGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEE---EESTTSSHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHhCc
Confidence 5777 999999999999999654
No 458
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=82.11 E-value=0.35 Score=58.41 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=18.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
+|+| +|+.|||||||+..|+
T Consensus 1107 ~vaI---VG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1107 TLAL---VGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp EEEE---ECSTTSSTTSHHHHHT
T ss_pred EEEE---ECCCCChHHHHHHHHh
Confidence 6788 9999999999999994
No 459
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.10 E-value=0.73 Score=45.09 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.7
Q ss_pred EEecccccCCCCChhHHHHHHHHH
Q 007929 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
|++ +|++|+|||||+.+|...
T Consensus 76 vll---~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLL---VGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEE---ECCCcChHHHHHHHHHHH
Confidence 677 999999999999999654
No 460
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=81.94 E-value=3.8 Score=41.02 Aligned_cols=66 Identities=12% Similarity=-0.040 Sum_probs=44.6
Q ss_pred CeEEEEEeCCCCCchhHHHHHHHHHhcCCceE-EEEecCccccccccCCHHHHHHHHHHHHHHHHHHH
Q 007929 115 DGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM 181 (584)
Q Consensus 115 D~ailvvda~~g~~~~t~~~l~~~~~~~~p~i-vviNK~D~~~~~~~~~~~~~~~~~~~~l~~v~~~l 181 (584)
+++++|+-+..-....+++.+..+.+.++|+. +|+|++.-...... .....+..+++.++++.+.+
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~-~~~~~~~~~~~~l~~i~~~~ 289 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCE-FCNARRKLQQERLKQIREKF 289 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSH-HHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCCh-HHHHHHHHHHHHHHHHHHHc
Confidence 48899988877777788888888888999987 89999876421000 01222344556666666554
No 461
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=81.82 E-value=0.71 Score=43.74 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=18.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.++| +|++|+|||||+..|+..
T Consensus 26 ~~~i---~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEM---FGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHHHH
Confidence 4566 999999999999999753
No 462
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=81.61 E-value=0.34 Score=49.62 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=17.4
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.+++ +|+.|||||||++.|.
T Consensus 33 ~~~l---lGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 33 RFGI---LGPSGAGKTTFMRIIA 52 (353)
T ss_dssp EEEE---ECSCHHHHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHh
Confidence 3556 9999999999999994
No 463
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=81.53 E-value=0.85 Score=43.22 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=18.4
Q ss_pred ccCCCCChhHHHHHHHHHcCc
Q 007929 17 ANSTFAGKSTLTDSLVAAAGI 37 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g~ 37 (584)
+|++||||+|++..|...-|.
T Consensus 35 lGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 35 LGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp ECCTTCCHHHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHHHHHCC
Confidence 899999999999999766554
No 464
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=81.52 E-value=0.85 Score=42.04 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.|+| .|..||||||+.+.|....|
T Consensus 4 ~i~i---~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTI---DGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 4777 99999999999999966544
No 465
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=81.39 E-value=0.69 Score=43.21 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=18.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
..|++ .|..||||||++..|..
T Consensus 26 ~~i~~---~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWL---TGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHH
T ss_pred CEEEE---ECCCCCCHHHHHHHHHH
Confidence 45777 99999999999999854
No 466
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=81.33 E-value=0.74 Score=46.52 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.4
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.+++ .|++|+|||||+..+....+
T Consensus 53 ~~ll---~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 53 HVLL---AGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CEEE---ESSTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCcHHHHHHHHHHHhC
Confidence 4667 99999999999999976654
No 467
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=81.27 E-value=0.88 Score=41.92 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.8
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
..+.+ .|++|+|||||+.++...
T Consensus 55 ~~~~l---~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYL---HGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CeEEE---ECCCCCCHHHHHHHHHHH
Confidence 56778 999999999999999654
No 468
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=81.17 E-value=3.6 Score=34.83 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=50.0
Q ss_pred EEEEEeeeecCCCCc--eeEEEEeEeeeeecCcEEEEcCCCCCCCCccccceeeeceEEEEecCCccccCcccCCCEEEE
Q 007929 369 MLYVSKMIPASDKGR--FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (584)
Q Consensus 369 ~~~VfK~~~~~~~g~--~l~~~RV~sGtLk~g~~v~v~~~n~~~~~~e~~~~~ki~~l~~~~g~~~~~v~ea~AGdIvav 446 (584)
+..+|++. ..|+ .+|=|+|.+|.++.+..++++..+ +.++..++.+|- +...+|+++.+|.=|++
T Consensus 15 Vr~vF~is---k~g~~~~IAGC~V~~G~i~r~~~vRviRdg------~vI~eG~i~SLk----rfKdDVkEV~~G~ECGi 81 (120)
T 2crv_A 15 ILATFTVT---EGKKKIPVADCRVQKGQLERHKKFKLIRNG------QVIWKGSLTSLK----HHKDDISVIKTGMDCGL 81 (120)
T ss_dssp EEEEEEEE---ETTEEEEEEEEEEEESCEETTSCEEEEETT------EEEEEECCSEEE----SSSSCCSEECTTCEEEE
T ss_pred EeEEEEeC---CCCceeEEeEEEEEcCEEEcCCeEEEEECC------EEEEEeEehhhc----ccccccceecCCCEEEE
Confidence 45667653 3343 289999999999999999987532 123445677777 77889999999999999
Q ss_pred E
Q 007929 447 V 447 (584)
Q Consensus 447 ~ 447 (584)
.
T Consensus 82 ~ 82 (120)
T 2crv_A 82 S 82 (120)
T ss_dssp E
T ss_pred E
Confidence 5
No 469
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.06 E-value=8.9 Score=43.85 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.7
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-++.+ .|++|+|||+|+.+|...
T Consensus 589 ~~vLl---~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 589 GSFLF---LGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp EEEEE---BSCSSSSHHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHH
Confidence 36778 999999999999999544
No 470
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=80.64 E-value=0.81 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
+...|+| .|.+||||||+++.|-
T Consensus 74 ~~~iI~I---~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGL---TGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEE---EECTTSCHHHHHHHHH
T ss_pred CCEEEEE---ECCCCCCHHHHHHHHH
Confidence 3456888 9999999999999996
No 471
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=80.54 E-value=0.99 Score=43.15 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=21.7
Q ss_pred cceeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
-++...++ +|.+||||||++..|...-|
T Consensus 6 ~~~~~~~~---~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 6 HHHMRLIL---LGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp ---CEEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred ccccceee---ECCCCCCHHHHHHHHHHHhC
Confidence 45677888 99999999999999976554
No 472
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=80.36 E-value=0.8 Score=48.86 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=18.7
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.++| +|+.|||||||++.|...
T Consensus 31 ~~~l---iG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTL---SGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHH
T ss_pred eEEE---ECCCCCcHHHHHHHHhcC
Confidence 4566 999999999999999654
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=80.12 E-value=0.83 Score=42.63 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.0
Q ss_pred ccCCCCChhHHHHHHHHHcC
Q 007929 17 ANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~g 36 (584)
+|+.|+||||++++|.+..+
T Consensus 29 ~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 29 IGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp ECCTTSSHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHhc
Confidence 79999999999999965443
No 474
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=79.98 E-value=1 Score=42.31 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.1
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHH
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.-.+.+ .|++|+|||||+.++...
T Consensus 52 ~~~~ll---~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYL---WGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CCeEEE---ECCCCCCHHHHHHHHHHH
Confidence 346777 999999999999999644
No 475
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.96 E-value=1 Score=43.38 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.5
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
.|.+ .|++|+|||||+.++....
T Consensus 47 ~vll---~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLM---VGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHH
T ss_pred eEEE---ECcCCCCHHHHHHHHHHHc
Confidence 5677 9999999999999996543
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=79.92 E-value=4.2 Score=40.68 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.2
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.|.+ .|++|+|||+|+.++...
T Consensus 47 ~iLL---~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILL---FGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEE---ESSSSSCHHHHHHHHHHH
T ss_pred eEEE---ECCCCccHHHHHHHHHHH
Confidence 5777 999999999999999654
No 477
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=79.66 E-value=0.99 Score=42.99 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=20.6
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHc
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
...|+| .|..||||||+++.|....
T Consensus 26 g~~i~i---~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITF---EGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEE---ECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEE---EcCCCCCHHHHHHHHHHHH
Confidence 346777 9999999999999996543
No 478
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.64 E-value=0.87 Score=44.61 Aligned_cols=21 Identities=38% Similarity=0.262 Sum_probs=18.2
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.++| +|++|+|||||+.+|+.
T Consensus 32 i~~i---~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGAL---VSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEE---EESTTSSHHHHHHHHHH
T ss_pred EEEE---EcCCCCCHHHHHHHHHH
Confidence 4566 99999999999999975
No 479
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=79.61 E-value=0.94 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.5
Q ss_pred eEEecccccCCCCChhHHHHHHHHHcC
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
.++| +|+.|+|||||++.|.....
T Consensus 73 ~~gI---iG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 73 RIGI---FAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEEE---EECTTSSHHHHHHHHHHHSC
T ss_pred EEEE---ECCCCCCHHHHHHHHhcCCC
Confidence 5777 99999999999999976643
No 480
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.61 E-value=1.5 Score=46.99 Aligned_cols=19 Identities=11% Similarity=-0.122 Sum_probs=16.7
Q ss_pred ccCCCCChhHHHHHHHHHc
Q 007929 17 ANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~ 35 (584)
.|.+|+|||||+-.++...
T Consensus 248 ~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 248 TSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp EESSCHHHHHHHHHHHHHH
T ss_pred eecCCCCchHHHHHHHHHH
Confidence 8999999999999987653
No 481
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=79.35 E-value=14 Score=41.58 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHhhhcCeEEEEEeCCCCCchhHHHHHHHHHhc
Q 007929 107 VTAALRITDGALVVVDCIEGVCVQTETVLRQALGE 141 (584)
Q Consensus 107 ~~~~l~~~D~ailvvda~~g~~~~t~~~l~~~~~~ 141 (584)
...+++.+...++++|=.+.........+.++...
T Consensus 549 l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~ 583 (758)
T 1r6b_X 549 LTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDN 583 (758)
T ss_dssp HHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcC
Confidence 34566777888888897776666666666665553
No 482
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.26 E-value=0.98 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.0
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.+++ +|++|+|||||+..|...
T Consensus 171 ~i~l---~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLF---KGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhh
Confidence 5667 999999999999999754
No 483
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.24 E-value=0.86 Score=40.80 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.4
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-.+.+ .|++|+|||||+.++...
T Consensus 44 ~~vll---~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPIL---LGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEE---ESCGGGCHHHHHHHHHHH
T ss_pred CceEE---ECCCCCCHHHHHHHHHHH
Confidence 45677 999999999999999654
No 484
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.23 E-value=3.9 Score=50.83 Aligned_cols=24 Identities=38% Similarity=0.340 Sum_probs=20.1
Q ss_pred eeEEecccccCCCCChhHHHHHHHHHc
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
-.|.+ .|++|+|||+|+-++...+
T Consensus 1428 ~~vll---~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1428 RIVEI---YGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp SEEEE---ECCTTSSHHHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHH
Confidence 36677 9999999999999997653
No 485
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=79.17 E-value=1.2 Score=42.44 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=21.6
Q ss_pred eeeEEecccccCCCCChhHHHHHHHHHcC
Q 007929 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (584)
Q Consensus 8 ~~~v~i~~~~G~~~~GKTTL~~~Ll~~~g 36 (584)
...|+| +|..||||||+.+.|....|
T Consensus 16 ~~~i~i---~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 16 TIQIAI---DGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCEEEE---ECSSCSSHHHHHHHHHHHHC
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 356788 99999999999999976555
No 486
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=78.88 E-value=0.87 Score=49.86 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.4
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.++| +|+.|||||||++.|+.
T Consensus 371 ~~~i---vG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVAL---VGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEE---ECCCCCCHHHHHHHHhc
Confidence 5677 99999999999999953
No 487
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.83 E-value=0.89 Score=44.87 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.3
Q ss_pred eEEecccccCCCCChhHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~ 33 (584)
.|.+ .|.+||||||+++.|..
T Consensus 4 ~I~l---~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILT---IGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 4666 99999999999999965
No 488
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=78.41 E-value=1 Score=41.04 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=18.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
-|.| .|++|+|||||+-.|+..
T Consensus 18 gvli---~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLI---TGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEE---EESSSSSHHHHHHHHHHT
T ss_pred EEEE---EcCCCCCHHHHHHHHHHc
Confidence 4666 999999999999999753
No 489
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=78.30 E-value=0.32 Score=46.58 Aligned_cols=19 Identities=37% Similarity=0.356 Sum_probs=16.8
Q ss_pred ccCCCCChhHHHHHHHHHc
Q 007929 17 ANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~~ 35 (584)
+|+.|||||||+++|.+..
T Consensus 33 ~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HSCCSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhccc
Confidence 9999999999999996543
No 490
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=78.24 E-value=0.97 Score=45.80 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=16.0
Q ss_pred ccCCCCChhHHHHHHHHH
Q 007929 17 ANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 17 ~G~~~~GKTTL~~~Ll~~ 34 (584)
+|+.|+|||||++++.+.
T Consensus 29 ~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 29 IGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 799999999999998543
No 491
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=77.77 E-value=1.2 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.9
Q ss_pred cceeeEEecccccCCCCChhHHHHHH
Q 007929 6 FTTISVCLGPDANSTFAGKSTLTDSL 31 (584)
Q Consensus 6 ~~~~~v~i~~~~G~~~~GKTTL~~~L 31 (584)
.+..+|.+ +|.+||||||++.+|
T Consensus 31 ~~~~kill---lG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILL---LGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEE---ECSTTSSHHHHHHHH
T ss_pred cCccEEEE---ECCCCCcHHHHHHHH
Confidence 46789999 999999999999998
No 492
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=77.72 E-value=1 Score=42.02 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.5
Q ss_pred eeEEecccccCCCCChhHHHHHHHHH
Q 007929 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 9 ~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.-|+| +|++|+|||||+..|...
T Consensus 35 ~~ilI---~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLI---TGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEE---ECCCTTTTHHHHHHHHTT
T ss_pred EEEEE---ECCCCCCHHHHHHHHHHh
Confidence 35677 999999999999999644
No 493
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=77.41 E-value=3.5 Score=40.93 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.9
Q ss_pred ceeeEEecccccCCCCChhHHHHHHHHH
Q 007929 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 7 ~~~~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
...+|.| .|.+|+|||+++.++...
T Consensus 24 ~~~~vLi---~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 24 SDATVLI---HGDSGTGKELVARALHAC 48 (304)
T ss_dssp TTSCEEE---ESCTTSCHHHHHHHHHHH
T ss_pred CCCcEEE---ECCCCchHHHHHHHHHHh
Confidence 3457888 999999999999999654
No 494
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=77.24 E-value=1 Score=49.38 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=18.0
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|+
T Consensus 371 ~~~i---vG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 371 TVAL---VGRSGSGKSTIASLIT 390 (582)
T ss_dssp EEEE---EECTTSSHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 5677 9999999999999994
No 495
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=77.19 E-value=1.2 Score=42.16 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=17.8
Q ss_pred eEEecccccCCCCChhHHHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~ 34 (584)
.+.| +|++|+|||||+.+++..
T Consensus 25 ~~~i---~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 25 VVLL---SGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEE---EECTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHH
Confidence 4556 899999999998888543
No 496
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=77.08 E-value=1.1 Score=48.62 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.2
Q ss_pred EEeEeeeeecCcEEEEcCCCC
Q 007929 388 GRVFSGKVATGLKVRIMGPNY 408 (584)
Q Consensus 388 ~RV~sGtLk~g~~v~v~~~n~ 408 (584)
+++.+.++++|..+-++|+|-
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NG 322 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNG 322 (538)
T ss_dssp EEECCEEEETTCEEEEECCTT
T ss_pred EEeCccccCCCCEEEEECCCC
Confidence 577888999999999999873
No 497
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=77.07 E-value=2.7 Score=45.98 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=47.7
Q ss_pred CceeEEEeCCCCCCC----------c-------------hHHHHHHhh--hcCeEEEEEeCCCCCchhHHHHHHHHHhcC
Q 007929 88 NEYLINLIDSPGHVD----------F-------------SSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER 142 (584)
Q Consensus 88 ~~~~inliDTPG~~d----------f-------------~~e~~~~l~--~~D~ailvvda~~g~~~~t~~~l~~~~~~~ 142 (584)
..+.+.+||||+-.. + ..+....++ .+|.+++|+.+.......+.+.+..+.+.+
T Consensus 439 ~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g 518 (589)
T 1ihu_A 439 AGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAG 518 (589)
T ss_dssp GGTSEEEESCCCCHHHHHHHHHC------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCC
Confidence 358899999998521 0 011122232 468999999887766667778888888889
Q ss_pred CceE-EEEecCccc
Q 007929 143 IRPV-LTVNKMDRC 155 (584)
Q Consensus 143 ~p~i-vviNK~D~~ 155 (584)
+++. +|+|+++-.
T Consensus 519 ~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 519 IHPWGWIINNSLSI 532 (589)
T ss_dssp CCCCEEEEEEESTT
T ss_pred CCCCEEEEeCCcCC
Confidence 9876 899998764
No 498
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=77.05 E-value=5.4 Score=42.02 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=19.9
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
++.+ .|++|+|||||+..+....
T Consensus 52 ~vLL---~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMIL---WGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCcHHHHHHHHHHHh
Confidence 6777 9999999999999996554
No 499
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=77.02 E-value=1.2 Score=46.90 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=20.1
Q ss_pred eEEecccccCCCCChhHHHHHHHHHc
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll~~~ 35 (584)
.++| +|+.|+|||||++.|....
T Consensus 159 ~~~I---vG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGL---FAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEE---EECTTSSHHHHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHhccc
Confidence 5777 9999999999999997654
No 500
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=76.92 E-value=0.87 Score=50.06 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.0
Q ss_pred eEEecccccCCCCChhHHHHHHH
Q 007929 10 SVCLGPDANSTFAGKSTLTDSLV 32 (584)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~Ll 32 (584)
.++| +|+.|||||||++.|+
T Consensus 383 ~~~i---vG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 383 KVAL---VGPTGSGKTTIVNLLM 402 (598)
T ss_dssp EEEE---ECCTTSSTTHHHHHHT
T ss_pred EEEE---ECCCCCcHHHHHHHHh
Confidence 5677 9999999999999994
Done!