BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007930
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA-LAKFSGYMQLGDTCSSMG 172
+ +L+ LA +Y G+++EA P+ +R++E+ + G D +AK + L C + G
Sbjct: 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL--LCQNQG 167
Query: 173 LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227
+ + Y+ LEI LG DP VA+T LA +++ +F +AE L K+IL
Sbjct: 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 56/249 (22%)
Query: 105 FSGSGQELELVM-SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQ 163
F G G E+ + +LH L Y S GR+E AVP+ ++++E ++ G D +
Sbjct: 16 FQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--------HPD 67
Query: 164 LGDTCSSMGLLDRSVWCYESG-------LEIQIEALGDSDPRVAETCRYLAEAHIQAMQF 216
+ + + L+ R Y+ L I+ + LG P VA T LA + + ++
Sbjct: 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 127
Query: 217 DEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG 276
EAE LCK+ LEI + VL
Sbjct: 128 KEAEPLCKRALEIREK---------------------------------VLGKDHPDVAK 154
Query: 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR 336
Q N +A + + G +++E + YQ+ L +++ G D +VA LA Y +
Sbjct: 155 QLNNLALLCQNQG-------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK 207
Query: 337 IGKLRESKS 345
GK +++++
Sbjct: 208 QGKFKQAET 216
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%)
Query: 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLE 481
GRY A + A+ L + +LN + L + +A L +A + E
Sbjct: 41 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100
Query: 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541
+ G H +NLA Y G+ ++A + + L++RE+ LG +PD+ + LA
Sbjct: 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160
Query: 542 ELLKETGR 549
L + G+
Sbjct: 161 LLCQNQGK 168
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 215 QFDEAENLCKKILE-IHREHGHSASLEEAADRRLMALVYEAKADYESALEHL--VLASMV 271
+++ A LCK+ LE + + GH + A ++ALVY + Y+ A L LA
Sbjct: 42 RYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100
Query: 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLA 331
VAA ++ +Y ++ EA ++ L + + G+DH VA LA
Sbjct: 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160
Query: 332 DLYYRIGKLRESKSYCENALRV 353
L GK E + Y + AL +
Sbjct: 161 LLCQNQGKYEEVEYYYQRALEI 182
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%)
Query: 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDA 511
LN + + + + EA L + A + E+ G H D +NLA G+ E+
Sbjct: 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172
Query: 512 IEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549
+ L++ + KLG +P++ K LA + G+
Sbjct: 173 EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 77/193 (39%), Gaps = 9/193 (4%)
Query: 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHXXXXXXXXXXXXXXXDTPGY-HS 405
C+ AL K + P+ +A L ++ +Y N++ T G H
Sbjct: 50 CKQALEDLEKTSGHDHPD-VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108
Query: 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAV-VKLRASGESKSAFFGIVLNQMGLACLQLY 464
+A + V+ G+Y EA + A+ ++ + G+ LN + L C
Sbjct: 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV-AKQLNNLALLCQNQG 167
Query: 465 RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL-KVRE 523
+ E ++ A + + + G + +NLA+ Y G+ + A + + IL + E
Sbjct: 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227
Query: 524 EKLGTANPDIDDE 536
+ G+ +DDE
Sbjct: 228 REFGS----VDDE 236
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 63 SSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLA 122
S D+PD+ L LA + N K + + + + + + +L+ LA
Sbjct: 35 SGHDHPDVATMLNILA--LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92
Query: 123 AIYCSLGRFEEAVPVLERSIEVVD--IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
+Y G+++EA P+ +R++E+ + +GK + S L C + G + +
Sbjct: 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALL---CQNQGKAEEVEYY 149
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227
Y LEI LG DP VA+T LA +++ ++ +AE L K+IL
Sbjct: 150 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%)
Query: 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510
+LN + L + EA L +A + E+ G H +NLA Y G+ ++
Sbjct: 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103
Query: 511 AIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRA 550
A + + L++RE+ LG +PD+ + LA L + G+A
Sbjct: 104 AEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKA 143
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 2/147 (1%)
Query: 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAV-VKLRASGESKSAFFGIVLNQMGLACLQ 462
H +A + + ++ +Y EA A+ ++ + G+ A LN + + +
Sbjct: 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV-AATLNNLAVLYGK 97
Query: 463 LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522
+ EA L + A + E+ G H D SNLA G+ E+ L++
Sbjct: 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 523 EEKLGTANPDIDDEKERLAELLKETGR 549
+LG +P++ K LA + G+
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGK 184
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528
A L ++A LE+ G H D + + LA Y + ++A +L L +RE+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 529 ANPDIDDEKERLAELLKETGR 549
+P + LA L + G+
Sbjct: 80 DHPAVAATLNNLAVLYGKRGK 100
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 11/192 (5%)
Query: 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHXXXXXXXXXXXXXXXDTPGY-HS 405
C+ AL K + P+ +A L ++ +Y N++ T G H
Sbjct: 24 CKQALEDLEKTSGHDHPD-VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAV-VKLRASGESKSAFFGIV---LNQMGLACL 461
+A + V+ G+Y EA + A+ ++ + G+ F V L+ + L C
Sbjct: 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK----FHPDVAKQLSNLALLCQ 138
Query: 462 QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL-K 520
+ E + A + G + +NLA+ Y G+ +DA + + IL +
Sbjct: 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Query: 521 VREEKLGTANPD 532
E++ G+ N D
Sbjct: 199 AHEKEFGSVNGD 210
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 63 SSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLA 122
S D+PD+ L LA + N K + + + + + + +L+ LA
Sbjct: 35 SGHDHPDVATMLNILA--LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92
Query: 123 AIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYM--QLGDT---CSSMGLLDRS 177
+Y G+++EA P+ +R++E+ ++ L KF + QL + C + G +
Sbjct: 93 VLYGKRGKYKEAEPLCKRALEI------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEV 146
Query: 178 VWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227
+ Y LEI LG DP VA+T LA +++ ++ +AE L K+IL
Sbjct: 147 EYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%)
Query: 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510
+LN + L + EA L +A + E+ G H +NLA Y G+ ++
Sbjct: 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103
Query: 511 AIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRA 550
A + + L++RE+ LG +PD+ + LA L + G+A
Sbjct: 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 11/192 (5%)
Query: 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHXXXXXXXXXXXXXXXDTPGY-HS 405
C+ AL K + P+ +A L ++ +Y N++ T G H
Sbjct: 24 CKQALEDLEKTSGHDHPD-VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAV-VKLRASGESKSAFFGIV---LNQMGLACL 461
+A + V+ G+Y EA + A+ ++ + G+ F V LN + L C
Sbjct: 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK----FHPDVAKQLNNLALLCQ 138
Query: 462 QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL-K 520
+ E + A + G + +NLA+ Y G+ +DA + + IL +
Sbjct: 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Query: 521 VREEKLGTANPD 532
E++ G+ N D
Sbjct: 199 AHEKEFGSVNGD 210
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528
A L ++A LE+ G H D + + LA Y + ++A +L L +RE+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 529 ANPDIDDEKERLAELLKETGR 549
+P + LA L + G+
Sbjct: 80 DHPAVAATLNNLAVLYGKRGK 100
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 2/147 (1%)
Query: 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAV-VKLRASGESKSAFFGIVLNQMGLACLQ 462
H +A + + ++ +Y EA A+ ++ + G+ A LN + + +
Sbjct: 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV-AATLNNLAVLYGK 97
Query: 463 LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522
+ EA L + A + E+ G H D +NLA G+ E+ L++
Sbjct: 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 523 EEKLGTANPDIDDEKERLAELLKETGR 549
+LG +P++ K LA + G+
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGK 184
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 22/151 (14%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
+ LG+ G D ++ Y+ LE+ DPR AE L A+ + +DEA
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI 55
Query: 221 NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE 280
+K LE+ + + Y + DY+ A+E+ A + +
Sbjct: 56 EYYQKALELDPRSAEA--------WYNLGNAYYKQGDYDEAIEYYQKALEL------DPR 101
Query: 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV 311
A ++GN Y +DEAI YQK L +
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDR 176
+ + L Y G ++EA+ ++++E+ D A+ + LG+ G D
Sbjct: 37 AWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPRSAE--AWYNLGNAYYKQGDYDE 87
Query: 177 SVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEI 229
++ Y+ LE+ DPR AE L A+ + +DEA +K LE+
Sbjct: 88 AIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220
+ LG+ G D ++ Y+ LE+ DPR AE L A+ + +DEA
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI 57
Query: 221 NLCKKILEI 229
+K LE+
Sbjct: 58 EYYQKALEL 66
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 286 VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKS 345
++GN Y +DEAI YQK L + + A + L + YY+ G E+
Sbjct: 7 YNLGNAYYKQGDYDEAIEYYQKALELDPRS--------AEAWYNLGNAYYKQGDYDEAIE 58
Query: 346 YCENALRV 353
Y + AL +
Sbjct: 59 YYQKALEL 66
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 131 FEEAVPVLERSIEVVD-IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI 189
+ AV E ++ +V +G DRA A+ + LG+T +G +V +E L I
Sbjct: 163 LQAAVDFYEENLSLVTALG---DRA-AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218
Query: 190 EALGDSDPRVAETCRY--LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRL 247
E GD + AE Y L A+I +F+ A KK L + R+ A EA
Sbjct: 219 E-FGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV--EAQSCYS 272
Query: 248 MALVYEAKADYESALE-HLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306
+ Y DYE A++ HL ++ N + E A S+GN Y +L D+A+ +
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC-WSLGNAYTALGNHDQAMHFAE 331
Query: 307 KGLTV 311
K L +
Sbjct: 332 KHLEI 336
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
L Y LG FE A ++++ + K DRA+ +C S+G +
Sbjct: 233 LGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVE--------AQSCYSLGNTYTLLQD 282
Query: 181 YESGLEIQIEALG---DSDPRVAE--TCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234
YE ++ ++ L + + R+ E C L A+ D+A + +K LEI RE G
Sbjct: 283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 26/129 (20%)
Query: 257 DYESALEH----LVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVF 312
DY ALE+ L LA + G + A ++GN L FDEAI Q+ L +
Sbjct: 62 DYAKALEYHHHDLTLARTI----GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS 117
Query: 313 KATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA---PEEIANG 369
+ D + A L ++Y+ GK P P PEE+ +
Sbjct: 118 RELN--DKVGEARALYNLGNVYHAKGK-------------SFGCPGPQDVGEFPEEVRDA 162
Query: 370 LTEISAIYE 378
L YE
Sbjct: 163 LQAAVDFYE 171
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 34/247 (13%)
Query: 128 LGRFEEAVPVLERSIEVV-DIGKGSDRALAKFSGYMQLGDTCSSMG-------------- 172
+GRF+EA ER + + +G DR L++ LG+ + G
Sbjct: 139 MGRFDEAAICCERHLTLARQLG---DR-LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194
Query: 173 ---LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEI 229
L R+V Y+ L++ + LGD + C L + F A ++ L I
Sbjct: 195 VKEALTRAVEFYQENLKL-MRDLGDRGAQ-GRACGNLGNTYYLLGDFQAAIEHHQERLRI 252
Query: 230 HREHGHSASLEEAADRRLMALVYEAK---ADYESALEHLVLASMVMIANGQENEVAAIDV 286
RE G + AA+RR + + + +E A EH + + G+ A
Sbjct: 253 AREFG-----DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307
Query: 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346
S+GN Y L F+ AI + + L + A D + A L + + IG + Y
Sbjct: 308 SLGNTYTLLHEFNTAIEYHNRHLAI--AQELGDRIGEARACWSLGNAHSAIGGHERALKY 365
Query: 347 CENALRV 353
E L++
Sbjct: 366 AEQHLQL 372
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346
++GN Y +DEAI YQK L ++ A + L + YY+ G E+ Y
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELYPNN--------AEAWYNLGNAYYKQGDYDEAIEY 65
Query: 347 CENALRVCAKPAPA 360
+ AL + A A
Sbjct: 66 YQKALELYPNNAEA 79
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 193 GDSDP-RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS-ASLEEAADRRLMAL 250
G DP AE L A+ + +DEA +K LE++ + + +L A
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNA-------- 52
Query: 251 VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLT 310
Y + DY+ A+E+ A + N A ++GN Y +DEAI YQK L
Sbjct: 53 -YYKQGDYDEAIEYYQKALELYPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Query: 311 VF 312
++
Sbjct: 106 LY 107
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 21/188 (11%)
Query: 131 FEEAVPVLERSIEVVD-IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI 189
+ AV + E ++ +V +G DRA A+ + LG+T +G +V +E L I
Sbjct: 161 LQAAVDLYEENLSLVTALG---DRA-AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 216
Query: 190 EALGDSDPRVAETCRY--LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRL 247
E GD + AE Y L A+I +F+ A KK L + R+ A EA
Sbjct: 217 E-FGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV--EAQSCYS 270
Query: 248 MALVYEAKADYESA----LEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIF 303
+ Y DYE A L+HL +A + G+ S+GN Y +L D+A+
Sbjct: 271 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC----WSLGNAYTALGNHDQAMH 326
Query: 304 SYQKGLTV 311
+K L +
Sbjct: 327 FAEKHLEI 334
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 49/129 (37%), Gaps = 26/129 (20%)
Query: 257 DYESALEH----LVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVF 312
DY ALE+ L LA + G + A ++GN L FDEAI Q+ L +
Sbjct: 60 DYAKALEYHHHDLTLARTI----GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS 115
Query: 313 KATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA---PEEIANG 369
+ D + A L ++Y+ GK P P PE++ N
Sbjct: 116 RELN--DKVGEARALYNLGNVYHAKGK-------------SFGCPGPQDTGEFPEDVRNA 160
Query: 370 LTEISAIYE 378
L +YE
Sbjct: 161 LQAAVDLYE 169
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 21/188 (11%)
Query: 131 FEEAVPVLERSIEVVD-IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI 189
+ AV + E ++ +V +G DRA A+ + LG+T +G +V +E L I
Sbjct: 159 LQAAVDLYEENLSLVTALG---DRA-AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214
Query: 190 EALGDSDPRVAETCRY--LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRL 247
E GD + AE Y L A+I +F+ A KK L + R+ A EA
Sbjct: 215 E-FGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV--EAQSCYS 268
Query: 248 MALVYEAKADYESA----LEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIF 303
+ Y DYE A L+HL +A + G+ S+GN Y +L D+A+
Sbjct: 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC----WSLGNAYTALGNHDQAMH 324
Query: 304 SYQKGLTV 311
+K L +
Sbjct: 325 FAEKHLEI 332
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 49/129 (37%), Gaps = 26/129 (20%)
Query: 257 DYESALEH----LVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVF 312
DY ALE+ L LA + G + A ++GN L FDEAI Q+ L +
Sbjct: 58 DYAKALEYHHHDLTLARTI----GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS 113
Query: 313 KATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA---PEEIANG 369
+ D + A L ++Y+ GK P P PE++ N
Sbjct: 114 RELN--DKVGEARALYNLGNVYHAKGK-------------SFGCPGPQDTGEFPEDVRNA 158
Query: 370 LTEISAIYE 378
L +YE
Sbjct: 159 LQAAVDLYE 167
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 32.0 bits (71), Expect = 0.93, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346
++GN Y +DEAI YQK L E + A + L + YY+ G E+ Y
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKAL--------ELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 347 CENALRVCAKPAPATAPEEIANG 369
+ AL + P A A + + N
Sbjct: 66 YQKALEL--DPNNAEAKQNLGNA 86
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 148 GKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRY-- 205
G GS A + G LG+T +G +V +E L I E GD + AE Y
Sbjct: 1 GPGSRAAQGRAFG--NLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGD---KAAERIAYSN 54
Query: 206 LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESA---- 261
L A+I +F+ A KK L + R+ A EA + Y DYE A
Sbjct: 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAV--EAQSCYSLGNTYTLLQDYEKAIDYH 112
Query: 262 LEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV 311
L+HL +A + G+ S+GN Y +L D+A+ +K L +
Sbjct: 113 LKHLAIAQELKDRIGEGRAC----WSLGNAYTALGNHDQAMHFAEKHLEI 158
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
L Y LG FE A ++++ + K DRA+ +C S+G +
Sbjct: 55 LGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVE--------AQSCYSLGNTYTLLQD 104
Query: 181 YESGLEIQIEALG---DSDPRVAE--TCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234
YE ++ ++ L + R+ E C L A+ D+A + +K LEI RE G
Sbjct: 105 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 163
>pdb|3MV2|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|C Chain C, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|E Chain E, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 325
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 32/163 (19%)
Query: 105 FSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSG---Y 161
F G E + + L A+ + G F+ AV L + + VV + + G Y
Sbjct: 18 FQGPHMETAIWIKNSKLPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTY 77
Query: 162 M---------QLG------DTCSSMGLLDRSVWCYESGLEIQIEALGD-------SDPRV 199
+ QLG DT S + + Y GL++ E + + + P +
Sbjct: 78 IPSTPCELPAQLGYVRAYDDTVS-----EDQILPYVPGLDVVNEKMNEGYKNFKLNKPDI 132
Query: 200 AETCRYLAEAHIQAMQFDEAEN--LCKKILEIHREHGHSASLE 240
A C A I + D+AE+ L KILE RE+ S+E
Sbjct: 133 AIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIE 175
>pdb|2R5S|A Chain A, The Crystal Structure Of A Domain Of Protein Vp0806
(Unknown Function) From Vibrio Parahaemolyticus Rimd
2210633
pdb|2R5S|B Chain B, The Crystal Structure Of A Domain Of Protein Vp0806
(Unknown Function) From Vibrio Parahaemolyticus Rimd
2210633
Length = 176
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521
LEQE + + D + LA Y+ +GR E+A+E+L ILKV
Sbjct: 97 LEQELAA-NPDNFELACELAVQYNQVGRDEEALELLWNILKV 137
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346
++GN Y +DEAI YQK L E + A + L + YY+ G E+ Y
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKAL--------ELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 347 CENALRVCAKPAPA 360
+ AL + A A
Sbjct: 66 YQKALELDPNNAEA 79
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 17/109 (15%)
Query: 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWC 180
L Y G ++EA+ ++++E+ + A A + LG+ G D ++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEA----WYNLGNAYYKQGDYDEAIEY 65
Query: 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEI 229
Y+ LE+ DP AE L A+ + +DEA +K LE+
Sbjct: 66 YQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
>pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|D Chain D, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 191
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 298 FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA-----LR 352
FD +I + G+ KAT G+ HL RL + + K + K +N LR
Sbjct: 25 FDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLR 84
Query: 353 VCAKPAPATAPEEIANGLTEISAIYEALN 381
+ A T L EI +++E ++
Sbjct: 85 TACERAKRTLSSSTQASL-EIDSLFEGID 112
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 212 QAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271
+A QFDEA K E+H++ + L A A YE K +YE+A+ L A
Sbjct: 17 KARQFDEAIEHYNKAWELHKDITY---LNNRA-----AAEYE-KGEYETAISTLNDA--- 64
Query: 272 MIANGQENEVAAIDVS-----IGNIYMSLCRFDEAIFSYQKGLT 310
+ G+E +S IGN Y L + I YQK LT
Sbjct: 65 -VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,658,314
Number of Sequences: 62578
Number of extensions: 603891
Number of successful extensions: 1676
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1604
Number of HSP's gapped (non-prelim): 116
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)