Query 007930
Match_columns 584
No_of_seqs 1492 out of 3346
Neff 12.1
Searched_HMMs 46136
Date Thu Mar 28 17:13:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 6.9E-47 1.5E-51 338.4 29.5 399 65-552 110-508 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 7.8E-47 1.7E-51 338.0 28.2 417 74-571 51-492 (966)
3 KOG1840 Kinesin light chain [C 100.0 2.4E-32 5.2E-37 252.3 46.4 419 67-545 84-503 (508)
4 TIGR00990 3a0801s09 mitochondr 100.0 1E-32 2.2E-37 275.9 46.4 419 71-566 127-573 (615)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 5.6E-32 1.2E-36 289.5 46.7 410 67-568 461-870 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 7.2E-32 1.6E-36 288.6 46.4 405 66-562 494-898 (899)
7 PRK11447 cellulose synthase su 100.0 2.4E-30 5.2E-35 275.4 49.8 413 84-566 160-702 (1157)
8 PRK11447 cellulose synthase su 100.0 1.1E-30 2.4E-35 278.0 43.8 420 76-562 274-738 (1157)
9 KOG2002 TPR-containing nuclear 100.0 1.6E-30 3.5E-35 246.1 38.4 449 64-570 263-751 (1018)
10 KOG1840 Kinesin light chain [C 100.0 6.8E-30 1.5E-34 236.2 40.0 285 275-562 192-477 (508)
11 TIGR00990 3a0801s09 mitochondr 100.0 3.7E-29 8E-34 250.4 44.9 385 71-522 160-572 (615)
12 KOG2002 TPR-containing nuclear 100.0 1.2E-27 2.6E-32 226.8 41.8 428 62-562 155-591 (1018)
13 PRK15174 Vi polysaccharide exp 100.0 1.4E-27 3.1E-32 237.6 40.1 333 164-567 48-384 (656)
14 PRK15174 Vi polysaccharide exp 100.0 1.7E-27 3.7E-32 237.0 39.4 362 118-553 45-410 (656)
15 PRK10049 pgaA outer membrane p 100.0 6.4E-27 1.4E-31 238.2 44.0 440 66-572 10-464 (765)
16 KOG0547 Translocase of outer m 100.0 1.8E-26 3.9E-31 202.3 37.5 391 114-564 114-566 (606)
17 PRK09782 bacteriophage N4 rece 100.0 3.4E-25 7.3E-30 225.1 45.8 443 62-571 69-713 (987)
18 KOG0547 Translocase of outer m 100.0 6.9E-26 1.5E-30 198.6 34.4 397 69-524 113-569 (606)
19 PRK10049 pgaA outer membrane p 100.0 7.4E-25 1.6E-29 223.2 40.6 404 66-537 44-464 (765)
20 KOG1130 Predicted G-alpha GTPa 99.9 4.7E-25 1E-29 189.3 25.2 331 120-467 22-372 (639)
21 KOG2003 TPR repeat-containing 99.9 8.2E-25 1.8E-29 190.4 25.7 410 71-549 201-709 (840)
22 PRK14574 hmsH outer membrane p 99.9 4.9E-22 1.1E-26 198.1 48.0 442 63-572 26-521 (822)
23 KOG2003 TPR repeat-containing 99.9 1.1E-24 2.3E-29 189.7 25.3 388 68-517 234-718 (840)
24 KOG1130 Predicted G-alpha GTPa 99.9 1.5E-24 3.2E-29 186.3 23.9 332 163-510 22-373 (639)
25 PRK11788 tetratricopeptide rep 99.9 4.2E-23 9.2E-28 197.0 35.3 318 200-570 35-357 (389)
26 KOG1126 DNA-binding cell divis 99.9 3E-24 6.5E-29 196.4 25.0 310 198-570 315-626 (638)
27 KOG1155 Anaphase-promoting com 99.9 8.5E-22 1.8E-26 172.1 38.3 343 160-566 166-538 (559)
28 PRK09782 bacteriophage N4 rece 99.9 4.5E-23 9.7E-28 209.8 34.1 386 80-553 351-763 (987)
29 KOG0548 Molecular co-chaperone 99.9 8E-22 1.7E-26 176.1 35.9 406 73-568 4-459 (539)
30 PRK11788 tetratricopeptide rep 99.9 4E-22 8.8E-27 190.3 36.5 309 160-521 37-347 (389)
31 KOG1155 Anaphase-promoting com 99.9 1.6E-21 3.4E-26 170.4 35.1 353 115-521 164-536 (559)
32 KOG1173 Anaphase-promoting com 99.9 9.7E-22 2.1E-26 176.2 34.4 408 72-545 50-534 (611)
33 KOG1126 DNA-binding cell divis 99.9 2E-23 4.4E-28 191.0 24.2 301 159-521 318-620 (638)
34 PLN03081 pentatricopeptide (PP 99.9 1.9E-21 4.1E-26 198.0 37.9 264 245-563 293-556 (697)
35 KOG1173 Anaphase-promoting com 99.9 3.2E-21 7E-26 172.9 34.3 445 71-571 16-525 (611)
36 PLN03218 maturation of RBCL 1; 99.9 5E-19 1.1E-23 181.8 50.4 417 67-563 366-782 (1060)
37 KOG2076 RNA polymerase III tra 99.9 3.9E-21 8.4E-26 181.9 30.8 353 158-565 139-513 (895)
38 KOG0624 dsRNA-activated protei 99.9 2.3E-20 5E-25 156.9 31.8 381 110-584 33-422 (504)
39 KOG4162 Predicted calmodulin-b 99.9 7.6E-20 1.6E-24 170.2 38.0 435 70-569 322-788 (799)
40 KOG2076 RNA polymerase III tra 99.9 4.7E-20 1E-24 174.6 36.0 392 115-559 139-551 (895)
41 PRK14574 hmsH outer membrane p 99.9 8.5E-19 1.8E-23 175.2 41.7 408 112-576 31-491 (822)
42 PLN03081 pentatricopeptide (PP 99.9 6.3E-19 1.4E-23 179.7 39.8 295 200-548 290-602 (697)
43 PLN03218 maturation of RBCL 1; 99.9 2.5E-17 5.4E-22 169.5 48.1 342 76-479 442-783 (1060)
44 PRK04841 transcriptional regul 99.9 4.5E-17 9.7E-22 173.0 48.9 417 75-524 345-763 (903)
45 KOG1129 TPR repeat-containing 99.9 5.5E-20 1.2E-24 153.6 20.1 280 112-437 178-458 (478)
46 KOG0548 Molecular co-chaperone 99.9 6.4E-18 1.4E-22 151.4 33.4 396 67-547 32-473 (539)
47 PLN03077 Protein ECB2; Provisi 99.9 1.5E-17 3.3E-22 173.9 42.0 401 72-562 223-718 (857)
48 KOG1129 TPR repeat-containing 99.8 1.6E-19 3.4E-24 150.9 19.1 294 197-544 178-473 (478)
49 KOG4162 Predicted calmodulin-b 99.8 2.1E-17 4.7E-22 154.2 35.2 398 69-521 355-783 (799)
50 KOG1174 Anaphase-promoting com 99.8 5E-17 1.1E-21 140.5 34.6 424 71-571 43-507 (564)
51 KOG1174 Anaphase-promoting com 99.8 6.9E-17 1.5E-21 139.7 34.4 402 64-548 90-519 (564)
52 KOG0624 dsRNA-activated protei 99.8 1E-17 2.2E-22 141.2 28.2 325 159-570 39-376 (504)
53 PLN03077 Protein ECB2; Provisi 99.8 1.4E-17 3E-22 174.2 34.7 403 74-561 190-651 (857)
54 KOG1156 N-terminal acetyltrans 99.8 7.4E-16 1.6E-20 141.2 39.4 416 72-556 8-504 (700)
55 PRK04841 transcriptional regul 99.8 1.3E-15 2.9E-20 161.8 47.1 420 114-564 340-760 (903)
56 PF13429 TPR_15: Tetratricopep 99.8 1.5E-19 3.3E-24 162.8 13.1 265 204-521 12-277 (280)
57 KOG0495 HAT repeat protein [RN 99.8 2.8E-15 6.2E-20 137.4 40.2 344 159-566 517-882 (913)
58 PF13429 TPR_15: Tetratricopep 99.8 2.2E-19 4.8E-24 161.8 13.9 264 246-562 12-275 (280)
59 KOG1941 Acetylcholine receptor 99.8 3.9E-16 8.5E-21 132.7 31.7 344 119-479 10-360 (518)
60 KOG1941 Acetylcholine receptor 99.8 5.2E-16 1.1E-20 132.0 31.2 346 161-521 9-360 (518)
61 COG3063 PilF Tfp pilus assembl 99.8 2.1E-17 4.6E-22 131.9 21.2 213 320-571 31-243 (250)
62 COG2956 Predicted N-acetylgluc 99.8 5.9E-16 1.3E-20 129.7 29.7 277 206-537 41-319 (389)
63 PRK12370 invasion protein regu 99.8 1.5E-16 3.2E-21 156.6 30.8 252 256-564 275-535 (553)
64 TIGR00540 hemY_coli hemY prote 99.8 4.2E-16 9.1E-21 147.7 32.7 310 200-562 84-397 (409)
65 TIGR00540 hemY_coli hemY prote 99.8 3.9E-16 8.4E-21 148.0 32.2 310 161-523 87-401 (409)
66 COG2956 Predicted N-acetylgluc 99.8 9.6E-16 2.1E-20 128.5 28.7 276 75-399 39-314 (389)
67 KOG0495 HAT repeat protein [RN 99.8 2.7E-15 6E-20 137.5 33.6 372 64-521 509-880 (913)
68 KOG2376 Signal recognition par 99.8 1.1E-13 2.4E-18 125.9 43.4 435 72-571 13-494 (652)
69 PRK12370 invasion protein regu 99.8 1.6E-16 3.6E-21 156.3 27.8 249 88-395 277-534 (553)
70 TIGR02521 type_IV_pilW type IV 99.8 1.9E-16 4.2E-21 140.1 25.0 205 320-563 27-231 (234)
71 KOG0550 Molecular chaperone (D 99.8 1E-16 2.3E-21 138.7 21.4 289 159-521 50-350 (486)
72 COG3063 PilF Tfp pilus assembl 99.8 2.1E-16 4.5E-21 126.3 21.4 205 279-521 32-236 (250)
73 PRK11189 lipoprotein NlpI; Pro 99.8 1.4E-16 3E-21 143.4 23.2 247 256-550 40-287 (296)
74 TIGR02521 type_IV_pilW type IV 99.8 5.6E-16 1.2E-20 137.2 26.4 207 277-521 26-232 (234)
75 KOG1127 TPR repeat-containing 99.8 8E-15 1.7E-19 140.7 34.9 410 88-557 474-990 (1238)
76 cd05804 StaR_like StaR_like; a 99.8 2.8E-15 6E-20 141.3 32.0 334 159-528 7-343 (355)
77 PRK10747 putative protoheme IX 99.8 8.6E-15 1.9E-19 138.0 34.4 301 200-563 84-389 (398)
78 cd05804 StaR_like StaR_like; a 99.8 1.6E-15 3.5E-20 142.9 28.7 339 67-445 2-344 (355)
79 KOG1125 TPR repeat-containing 99.7 2.1E-16 4.5E-21 143.1 20.4 269 246-553 289-561 (579)
80 PRK11189 lipoprotein NlpI; Pro 99.7 4.1E-16 9E-21 140.4 22.0 245 171-462 39-283 (296)
81 KOG1156 N-terminal acetyltrans 99.7 1.2E-13 2.6E-18 127.0 37.7 381 118-554 10-459 (700)
82 PRK10747 putative protoheme IX 99.7 8.4E-15 1.8E-19 138.1 31.2 300 161-522 87-391 (398)
83 KOG1127 TPR repeat-containing 99.7 3.8E-14 8.2E-19 136.2 32.7 374 128-567 471-882 (1238)
84 KOG3785 Uncharacterized conser 99.7 1.5E-13 3.3E-18 116.9 30.8 412 81-566 32-492 (557)
85 KOG1125 TPR repeat-containing 99.7 6.9E-16 1.5E-20 139.8 17.4 268 120-426 290-560 (579)
86 KOG1915 Cell cycle control pro 99.7 5.4E-12 1.2E-16 111.9 39.0 429 81-579 76-515 (677)
87 KOG2376 Signal recognition par 99.7 7.6E-11 1.7E-15 107.8 44.0 436 66-554 41-511 (652)
88 KOG2300 Uncharacterized conser 99.7 1.2E-10 2.5E-15 103.9 43.1 451 70-549 6-540 (629)
89 KOG0550 Molecular chaperone (D 99.7 2.2E-14 4.7E-19 124.6 19.5 292 241-567 48-353 (486)
90 PF12569 NARP1: NMDA receptor- 99.6 2.8E-12 6.1E-17 121.7 34.6 318 115-485 4-340 (517)
91 KOG2047 mRNA splicing factor [ 99.6 4.6E-10 1E-14 103.7 43.8 464 72-580 103-703 (835)
92 KOG2300 Uncharacterized conser 99.6 5.1E-10 1.1E-14 99.9 41.7 429 69-517 44-552 (629)
93 PF12569 NARP1: NMDA receptor- 99.6 1.2E-10 2.6E-15 110.8 40.6 299 71-404 4-342 (517)
94 PF14938 SNAP: Soluble NSF att 99.6 2.4E-13 5.2E-18 121.6 20.9 229 242-479 35-266 (282)
95 KOG3785 Uncharacterized conser 99.6 1.8E-12 3.8E-17 110.6 24.2 389 70-519 56-488 (557)
96 KOG1915 Cell cycle control pro 99.6 1.5E-09 3.2E-14 96.8 43.0 430 70-566 106-538 (677)
97 PLN02789 farnesyltranstransfer 99.6 4.4E-12 9.6E-17 113.6 26.3 209 291-547 46-268 (320)
98 PF14938 SNAP: Soluble NSF att 99.6 1.1E-12 2.4E-17 117.4 22.0 229 199-436 34-265 (282)
99 TIGR03302 OM_YfiO outer membra 99.6 1.5E-12 3.3E-17 114.3 22.3 187 320-521 29-232 (235)
100 TIGR03302 OM_YfiO outer membra 99.6 8.3E-13 1.8E-17 116.0 20.3 180 364-566 30-234 (235)
101 PLN02789 farnesyltranstransfer 99.5 5.6E-11 1.2E-15 106.6 27.8 209 251-505 46-268 (320)
102 PRK15359 type III secretion sy 99.5 1.6E-12 3.4E-17 102.8 14.8 128 387-548 13-140 (144)
103 COG3071 HemY Uncharacterized e 99.5 9.4E-09 2E-13 90.1 38.2 302 202-562 86-389 (400)
104 COG3071 HemY Uncharacterized e 99.4 5.8E-09 1.3E-13 91.3 33.4 300 161-522 87-391 (400)
105 KOG2047 mRNA splicing factor [ 99.4 9.5E-09 2E-13 95.3 36.1 427 70-549 247-709 (835)
106 PRK15179 Vi polysaccharide bio 99.4 5.6E-11 1.2E-15 117.5 22.5 156 338-522 63-218 (694)
107 KOG3617 WD40 and TPR repeat-co 99.4 4.1E-08 9E-13 93.8 38.4 375 159-567 859-1362(1416)
108 PRK10370 formate-dependent nit 99.4 6.6E-11 1.4E-15 99.0 18.3 126 421-571 52-180 (198)
109 PRK15359 type III secretion sy 99.4 1.8E-11 3.9E-16 96.8 13.8 117 428-572 13-129 (144)
110 PF10345 Cohesin_load: Cohesin 99.4 8.3E-07 1.8E-11 89.0 56.0 471 69-554 57-597 (608)
111 KOG4340 Uncharacterized conser 99.4 7.5E-09 1.6E-13 86.7 29.0 225 126-391 21-265 (459)
112 PRK14720 transcript cleavage f 99.3 5.9E-10 1.3E-14 111.1 25.3 148 159-354 32-179 (906)
113 PRK15179 Vi polysaccharide bio 99.3 1.2E-10 2.6E-15 115.2 20.2 159 170-355 61-219 (694)
114 PRK14720 transcript cleavage f 99.3 5.6E-10 1.2E-14 111.3 24.8 254 61-354 21-284 (906)
115 KOG4340 Uncharacterized conser 99.3 1.5E-08 3.3E-13 84.9 28.1 271 198-523 142-445 (459)
116 KOG3060 Uncharacterized conser 99.3 2.5E-08 5.4E-13 81.8 28.6 206 257-502 27-235 (289)
117 KOG1128 Uncharacterized conser 99.3 5.6E-09 1.2E-13 98.4 28.1 251 88-401 361-621 (777)
118 PRK10370 formate-dependent nit 99.3 9.4E-10 2E-14 92.1 20.1 119 380-521 52-173 (198)
119 KOG3617 WD40 and TPR repeat-co 99.3 5.2E-08 1.1E-12 93.1 32.7 337 116-520 758-1173(1416)
120 KOG3060 Uncharacterized conser 99.3 6.7E-09 1.4E-13 85.1 22.8 195 339-568 27-224 (289)
121 PRK15363 pathogenicity island 99.3 1.5E-10 3.2E-15 89.0 12.7 102 448-566 33-134 (157)
122 PRK15363 pathogenicity island 99.3 3.9E-10 8.6E-15 86.7 15.0 110 407-537 34-143 (157)
123 COG5010 TadD Flp pilus assembl 99.3 1.4E-09 3.1E-14 89.9 18.7 167 277-476 62-228 (257)
124 KOG1128 Uncharacterized conser 99.2 5.5E-10 1.2E-14 105.0 17.9 224 243-527 399-622 (777)
125 KOG0553 TPR repeat-containing 99.2 1.9E-10 4E-15 96.9 13.2 120 408-551 81-200 (304)
126 PF13424 TPR_12: Tetratricopep 99.2 4.8E-11 1E-15 83.6 8.4 77 447-524 2-78 (78)
127 COG5010 TadD Flp pilus assembl 99.2 7.9E-10 1.7E-14 91.3 15.9 157 367-555 67-223 (257)
128 TIGR02552 LcrH_SycD type III s 99.2 4.6E-10 1E-14 88.9 13.6 108 446-570 13-120 (135)
129 TIGR02552 LcrH_SycD type III s 99.2 6E-10 1.3E-14 88.3 13.8 110 389-521 5-114 (135)
130 PF13424 TPR_12: Tetratricopep 99.2 1.7E-10 3.7E-15 80.8 9.1 77 278-355 1-77 (78)
131 CHL00033 ycf3 photosystem I as 99.2 1.7E-09 3.8E-14 88.9 16.1 118 407-537 34-158 (168)
132 PF10345 Cohesin_load: Cohesin 99.2 9.4E-06 2E-10 81.6 51.4 433 111-554 55-554 (608)
133 PF04733 Coatomer_E: Coatomer 99.2 9.1E-10 2E-14 97.6 14.7 262 250-571 9-272 (290)
134 KOG1839 Uncharacterized protei 99.2 1.2E-08 2.6E-13 103.1 24.0 432 78-540 672-1147(1236)
135 KOG0553 TPR repeat-containing 99.2 7.8E-10 1.7E-14 93.2 13.2 122 365-509 79-200 (304)
136 PF13525 YfiO: Outer membrane 99.1 1E-08 2.2E-13 86.8 19.5 183 115-344 5-198 (203)
137 PF13525 YfiO: Outer membrane 99.1 5.3E-08 1.1E-12 82.4 23.8 183 282-512 5-198 (203)
138 KOG1585 Protein required for f 99.1 3.6E-07 7.8E-12 74.6 26.8 224 239-474 28-251 (308)
139 COG2909 MalT ATP-dependent tra 99.1 3.9E-06 8.6E-11 82.0 38.1 343 67-435 343-686 (894)
140 PRK10866 outer membrane biogen 99.1 7.9E-08 1.7E-12 83.3 23.6 188 115-349 32-237 (243)
141 PF04733 Coatomer_E: Coatomer 99.1 3E-09 6.6E-14 94.3 13.4 254 208-521 9-265 (290)
142 KOG1585 Protein required for f 99.1 4.6E-07 9.9E-12 74.0 24.2 222 319-554 26-247 (308)
143 CHL00033 ycf3 photosystem I as 99.1 4.2E-09 9.1E-14 86.6 13.1 121 320-446 31-151 (168)
144 KOG3081 Vesicle coat complex C 99.1 2.8E-07 6E-12 76.5 23.0 259 250-571 16-278 (299)
145 PLN03088 SGT1, suppressor of 99.0 5.5E-09 1.2E-13 96.5 14.9 114 411-548 5-118 (356)
146 PRK10866 outer membrane biogen 99.0 2.2E-07 4.7E-12 80.6 23.8 189 281-517 31-237 (243)
147 PRK02603 photosystem I assembl 99.0 5.4E-08 1.2E-12 80.3 19.0 113 404-529 31-150 (172)
148 PRK02603 photosystem I assembl 99.0 1.6E-08 3.5E-13 83.4 15.6 109 446-568 31-153 (172)
149 KOG0543 FKBP-type peptidyl-pro 99.0 2.2E-08 4.8E-13 88.5 16.0 140 411-566 211-357 (397)
150 PF09976 TPR_21: Tetratricopep 99.0 5.5E-08 1.2E-12 77.5 16.8 134 72-227 12-145 (145)
151 TIGR02795 tol_pal_ybgF tol-pal 99.0 2.3E-08 4.9E-13 77.3 13.4 110 451-571 3-112 (119)
152 KOG3616 Selective LIM binding 99.0 4.5E-05 9.9E-10 72.9 39.1 227 244-521 663-911 (1636)
153 KOG1839 Uncharacterized protei 99.0 1.2E-06 2.7E-11 89.1 28.3 431 120-555 623-1120(1236)
154 TIGR02795 tol_pal_ybgF tol-pal 99.0 2.4E-08 5.2E-13 77.2 13.2 103 409-521 3-105 (119)
155 PF13414 TPR_11: TPR repeat; P 98.9 7.5E-09 1.6E-13 70.5 8.9 64 450-521 3-67 (69)
156 KOG1586 Protein required for f 98.9 2.4E-06 5.2E-11 69.4 23.8 199 211-437 25-224 (288)
157 PF09976 TPR_21: Tetratricopep 98.9 1.7E-07 3.6E-12 74.8 17.7 123 294-435 23-145 (145)
158 PLN03088 SGT1, suppressor of 98.9 2E-08 4.4E-13 92.8 13.9 102 453-571 5-106 (356)
159 KOG3616 Selective LIM binding 98.9 5.2E-05 1.1E-09 72.5 35.6 225 283-560 662-908 (1636)
160 PF13414 TPR_11: TPR repeat; P 98.9 1.4E-08 3.1E-13 69.1 8.8 67 491-566 2-69 (69)
161 KOG1586 Protein required for f 98.9 6.4E-06 1.4E-10 67.0 24.6 206 168-402 24-230 (288)
162 PF12895 Apc3: Anaphase-promot 98.9 1.5E-08 3.2E-13 72.0 8.6 84 420-518 1-84 (84)
163 COG4783 Putative Zn-dependent 98.9 5E-07 1.1E-11 81.9 19.7 123 323-469 305-427 (484)
164 COG2909 MalT ATP-dependent tra 98.9 0.00013 2.8E-09 71.8 40.3 339 113-477 345-686 (894)
165 cd00189 TPR Tetratricopeptide 98.9 4.1E-08 8.8E-13 72.8 11.0 98 452-566 2-99 (100)
166 PF12688 TPR_5: Tetratrico pep 98.9 1.5E-07 3.2E-12 70.4 13.3 101 451-564 2-105 (120)
167 PRK10803 tol-pal system protei 98.8 1.3E-07 2.7E-12 82.4 14.8 113 451-574 143-256 (263)
168 KOG3081 Vesicle coat complex C 98.8 3.2E-06 7E-11 70.3 21.8 250 208-520 16-269 (299)
169 KOG2471 TPR repeat-containing 98.8 3.2E-05 6.9E-10 70.2 29.1 414 71-520 100-683 (696)
170 PF12895 Apc3: Anaphase-promot 98.8 3.2E-08 7E-13 70.2 8.7 81 462-560 1-83 (84)
171 PF13432 TPR_16: Tetratricopep 98.8 3.1E-08 6.8E-13 66.3 7.3 59 455-521 2-60 (65)
172 KOG2471 TPR repeat-containing 98.8 2.1E-06 4.6E-11 77.5 20.3 340 114-478 239-683 (696)
173 KOG0543 FKBP-type peptidyl-pro 98.8 4.5E-07 9.8E-12 80.5 15.8 138 368-521 209-355 (397)
174 COG4783 Putative Zn-dependent 98.8 1.9E-06 4E-11 78.3 19.9 132 367-521 306-437 (484)
175 cd00189 TPR Tetratricopeptide 98.8 1.2E-07 2.7E-12 70.1 11.0 96 410-521 2-97 (100)
176 COG5159 RPN6 26S proteasome re 98.7 1.7E-05 3.7E-10 66.7 23.0 301 204-519 7-312 (421)
177 PF12688 TPR_5: Tetratrico pep 98.7 6.5E-07 1.4E-11 67.0 13.4 101 410-520 3-103 (120)
178 KOG1463 26S proteasome regulat 98.7 2.4E-05 5.2E-10 67.5 24.0 318 204-545 8-332 (411)
179 PRK10803 tol-pal system protei 98.7 7.5E-07 1.6E-11 77.7 15.5 102 410-521 144-246 (263)
180 KOG1070 rRNA processing protei 98.7 2.9E-05 6.2E-10 79.6 27.7 211 111-354 1454-1664(1710)
181 COG1729 Uncharacterized protei 98.7 4.3E-07 9.3E-12 76.7 12.9 109 453-572 144-252 (262)
182 COG4235 Cytochrome c biogenesi 98.7 6.4E-07 1.4E-11 76.6 13.8 108 446-570 152-262 (287)
183 KOG1070 rRNA processing protei 98.7 9.7E-06 2.1E-10 82.8 23.9 210 320-564 1454-1663(1710)
184 PRK15331 chaperone protein Sic 98.7 1.7E-06 3.7E-11 67.3 14.7 103 402-520 31-133 (165)
185 PF13432 TPR_16: Tetratricopep 98.7 8.4E-08 1.8E-12 64.2 6.6 64 496-568 1-64 (65)
186 KOG1464 COP9 signalosome, subu 98.6 1.4E-05 3E-10 66.7 19.8 241 172-422 41-286 (440)
187 KOG4234 TPR repeat-containing 98.6 1.4E-06 3E-11 68.9 13.3 123 411-552 98-220 (271)
188 KOG4555 TPR repeat-containing 98.6 3.2E-06 6.9E-11 61.7 13.7 101 284-397 45-145 (175)
189 COG4700 Uncharacterized protei 98.6 1.3E-05 2.8E-10 62.8 17.6 151 379-559 68-218 (251)
190 PRK15331 chaperone protein Sic 98.6 9.2E-07 2E-11 68.7 11.3 101 447-564 34-134 (165)
191 COG4785 NlpI Lipoprotein NlpI, 98.6 3E-06 6.5E-11 68.0 14.0 205 196-436 61-265 (297)
192 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.5E-06 5.4E-11 78.5 15.4 119 413-559 174-292 (395)
193 COG4785 NlpI Lipoprotein NlpI, 98.6 5.3E-06 1.2E-10 66.7 15.1 208 63-311 57-266 (297)
194 PRK10153 DNA-binding transcrip 98.6 3.1E-06 6.6E-11 81.9 16.6 148 409-583 340-498 (517)
195 PRK11906 transcriptional regul 98.6 4E-06 8.7E-11 76.7 15.9 145 412-578 259-415 (458)
196 COG4105 ComL DNA uptake lipopr 98.5 3.8E-05 8.1E-10 64.5 20.0 174 159-347 35-227 (254)
197 PF10300 DUF3808: Protein of u 98.5 0.0009 1.9E-08 64.6 32.5 185 336-543 200-398 (468)
198 PF08631 SPO22: Meiosis protei 98.5 0.00037 8.1E-09 62.4 28.0 256 81-352 3-274 (278)
199 PF14559 TPR_19: Tetratricopep 98.5 4.4E-07 9.5E-12 61.5 6.8 66 461-542 2-67 (68)
200 COG3898 Uncharacterized membra 98.5 0.00066 1.4E-08 60.3 30.0 301 163-521 89-392 (531)
201 COG1729 Uncharacterized protei 98.5 3.2E-06 6.9E-11 71.6 13.0 109 411-537 144-252 (262)
202 COG3898 Uncharacterized membra 98.5 0.00069 1.5E-08 60.1 30.3 302 77-437 90-392 (531)
203 COG4105 ComL DNA uptake lipopr 98.5 6.9E-05 1.5E-09 63.0 20.5 185 367-571 34-240 (254)
204 KOG4555 TPR repeat-containing 98.5 1E-05 2.2E-10 59.1 13.5 105 451-568 44-148 (175)
205 PF13512 TPR_18: Tetratricopep 98.5 1.4E-05 3E-10 60.9 14.5 113 450-573 10-137 (142)
206 PF10300 DUF3808: Protein of u 98.5 0.00045 9.8E-09 66.6 28.2 175 294-491 200-388 (468)
207 KOG4234 TPR repeat-containing 98.5 4.4E-06 9.6E-11 66.1 11.8 117 368-502 96-212 (271)
208 PRK10153 DNA-binding transcrip 98.5 6.5E-06 1.4E-10 79.6 15.7 131 369-521 341-482 (517)
209 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00064 1.4E-08 60.6 28.1 207 324-566 59-267 (291)
210 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 4.7E-06 1E-10 76.7 13.6 119 374-518 176-294 (395)
211 COG4235 Cytochrome c biogenesi 98.4 1.8E-05 4E-10 68.0 16.1 98 408-521 156-256 (287)
212 PRK11906 transcriptional regul 98.4 2E-05 4.4E-10 72.2 17.3 161 370-558 258-431 (458)
213 PF13371 TPR_9: Tetratricopept 98.4 1.8E-06 4E-11 59.4 8.0 67 457-539 2-68 (73)
214 PF13512 TPR_18: Tetratricopep 98.4 1.1E-05 2.4E-10 61.4 12.4 104 408-521 10-128 (142)
215 KOG2796 Uncharacterized conser 98.4 0.00019 4.1E-09 59.9 19.7 137 369-521 179-315 (366)
216 COG4700 Uncharacterized protei 98.4 0.00022 4.7E-09 56.2 18.8 161 210-400 66-226 (251)
217 COG0457 NrfG FOG: TPR repeat [ 98.4 0.0016 3.5E-08 58.0 29.6 207 281-521 58-265 (291)
218 KOG1464 COP9 signalosome, subu 98.3 0.00015 3.3E-09 60.7 18.7 241 256-506 41-286 (440)
219 KOG4648 Uncharacterized conser 98.3 3.9E-06 8.5E-11 72.3 9.0 101 453-570 100-200 (536)
220 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 3.7E-06 7.9E-11 76.8 9.4 69 445-521 70-141 (453)
221 PF13371 TPR_9: Tetratricopept 98.3 4.2E-06 9.1E-11 57.6 7.4 68 498-574 1-68 (73)
222 PF08631 SPO22: Meiosis protei 98.3 0.0028 6E-08 56.9 28.8 253 211-478 4-274 (278)
223 PF14559 TPR_19: Tetratricopep 98.3 3.7E-06 8E-11 56.9 6.6 59 503-570 2-60 (68)
224 PF13374 TPR_10: Tetratricopep 98.3 2.2E-06 4.8E-11 51.3 4.8 41 492-532 2-42 (42)
225 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 1.3E-05 2.8E-10 73.4 11.4 74 64-144 68-141 (453)
226 KOG4648 Uncharacterized conser 98.2 9E-06 2E-10 70.2 9.0 105 413-541 102-206 (536)
227 COG5159 RPN6 26S proteasome re 98.2 0.0027 5.9E-08 53.9 25.3 231 162-400 7-239 (421)
228 KOG1463 26S proteasome regulat 98.2 0.0039 8.4E-08 54.5 29.7 303 120-436 9-315 (411)
229 KOG2610 Uncharacterized conser 98.1 0.00043 9.3E-09 60.0 17.2 163 289-475 110-272 (491)
230 KOG2796 Uncharacterized conser 98.0 0.0065 1.4E-07 51.1 28.1 242 114-400 68-319 (366)
231 PF12968 DUF3856: Domain of Un 97.9 0.0024 5.2E-08 46.2 15.5 120 199-318 6-136 (144)
232 PF12968 DUF3856: Domain of Un 97.9 0.0027 5.9E-08 45.9 15.7 120 366-485 6-135 (144)
233 PF13374 TPR_10: Tetratricopep 97.9 2.5E-05 5.5E-10 46.6 4.8 41 450-490 2-42 (42)
234 PF03704 BTAD: Bacterial trans 97.9 0.0011 2.4E-08 53.0 15.6 108 413-528 11-132 (146)
235 PF04184 ST7: ST7 protein; In 97.9 0.0066 1.4E-07 56.4 21.7 148 76-267 173-320 (539)
236 KOG0545 Aryl-hydrocarbon recep 97.9 0.00089 1.9E-08 55.4 14.6 116 409-540 179-304 (329)
237 PF13428 TPR_14: Tetratricopep 97.9 2.6E-05 5.7E-10 46.8 4.6 42 493-542 2-43 (44)
238 KOG0890 Protein kinase of the 97.9 0.048 1E-06 60.6 31.1 145 383-545 1645-1800(2382)
239 PF13281 DUF4071: Domain of un 97.9 0.013 2.8E-07 53.6 23.1 178 282-479 141-334 (374)
240 PF04184 ST7: ST7 protein; In 97.9 0.0037 8.1E-08 57.9 19.3 204 290-524 176-417 (539)
241 KOG2610 Uncharacterized conser 97.8 0.018 3.8E-07 50.5 27.9 165 207-394 110-274 (491)
242 PF02259 FAT: FAT domain; Int 97.8 0.029 6.4E-07 52.9 30.0 137 404-552 142-310 (352)
243 KOG0890 Protein kinase of the 97.8 0.093 2E-06 58.5 34.3 144 340-502 1645-1799(2382)
244 KOG0545 Aryl-hydrocarbon recep 97.8 0.00052 1.1E-08 56.7 12.0 111 451-570 179-299 (329)
245 PF09986 DUF2225: Uncharacteri 97.8 0.00077 1.7E-08 56.9 13.4 100 421-521 90-194 (214)
246 KOG0551 Hsp90 co-chaperone CNS 97.8 0.00035 7.7E-09 60.5 11.2 106 114-232 80-185 (390)
247 KOG4642 Chaperone-dependent E3 97.8 0.00032 6.9E-09 57.8 10.3 99 412-526 14-112 (284)
248 PF13281 DUF4071: Domain of un 97.8 0.0084 1.8E-07 54.7 20.4 181 367-567 141-337 (374)
249 KOG2041 WD40 repeat protein [G 97.8 0.042 9.1E-07 53.2 28.8 124 160-308 694-822 (1189)
250 PF10602 RPN7: 26S proteasome 97.8 0.0025 5.5E-08 52.2 15.2 127 263-397 17-143 (177)
251 PF13428 TPR_14: Tetratricopep 97.7 0.00011 2.4E-09 44.1 5.0 42 451-500 2-43 (44)
252 KOG0985 Vesicle coat protein c 97.7 0.078 1.7E-06 53.9 32.2 266 160-512 1106-1374(1666)
253 KOG4642 Chaperone-dependent E3 97.7 8.9E-05 1.9E-09 60.9 5.8 96 452-564 12-107 (284)
254 PF06552 TOM20_plant: Plant sp 97.7 0.00083 1.8E-08 53.2 10.7 100 424-540 7-120 (186)
255 KOG1550 Extracellular protein 97.7 0.05 1.1E-06 54.2 25.6 282 174-521 228-538 (552)
256 PF13431 TPR_17: Tetratricopep 97.7 4.6E-05 1E-09 42.3 2.7 33 514-554 1-33 (34)
257 COG2976 Uncharacterized protei 97.7 0.021 4.5E-07 46.1 19.5 95 413-521 94-188 (207)
258 PF09986 DUF2225: Uncharacteri 97.6 0.0027 5.9E-08 53.7 14.0 100 380-479 90-194 (214)
259 KOG0551 Hsp90 co-chaperone CNS 97.6 0.0036 7.7E-08 54.6 14.6 109 402-522 75-183 (390)
260 PF02259 FAT: FAT domain; Int 97.6 0.062 1.4E-06 50.7 30.7 50 448-505 250-305 (352)
261 KOG2053 Mitochondrial inherita 97.6 0.095 2.1E-06 52.6 30.3 230 212-479 21-255 (932)
262 PF10602 RPN7: 26S proteasome 97.6 0.0035 7.6E-08 51.4 14.1 111 196-311 32-142 (177)
263 KOG4507 Uncharacterized conser 97.6 0.0044 9.6E-08 58.3 16.0 108 415-545 614-721 (886)
264 PF06552 TOM20_plant: Plant sp 97.6 0.0011 2.3E-08 52.6 10.3 94 466-569 7-114 (186)
265 PF00515 TPR_1: Tetratricopept 97.6 0.00024 5.1E-09 39.8 5.0 30 492-521 1-30 (34)
266 PF13431 TPR_17: Tetratricopep 97.6 8.7E-05 1.9E-09 41.2 3.0 33 472-512 1-33 (34)
267 KOG1914 mRNA cleavage and poly 97.6 0.072 1.6E-06 50.2 38.6 413 65-564 14-464 (656)
268 KOG0985 Vesicle coat protein c 97.6 0.12 2.6E-06 52.6 38.9 217 114-391 1103-1336(1666)
269 PF03704 BTAD: Bacterial trans 97.5 0.012 2.6E-07 47.0 16.0 108 118-233 9-129 (146)
270 COG2976 Uncharacterized protei 97.5 0.035 7.7E-07 44.8 18.2 138 162-311 35-188 (207)
271 KOG2053 Mitochondrial inherita 97.5 0.15 3.2E-06 51.2 41.8 192 80-307 18-215 (932)
272 KOG3783 Uncharacterized conser 97.4 0.11 2.4E-06 49.1 28.0 271 121-437 237-520 (546)
273 PF00515 TPR_1: Tetratricopept 97.4 0.00052 1.1E-08 38.4 5.2 30 450-479 1-30 (34)
274 PF07719 TPR_2: Tetratricopept 97.4 0.00037 7.9E-09 39.0 4.5 30 492-521 1-30 (34)
275 KOG1550 Extracellular protein 97.4 0.047 1E-06 54.4 22.0 282 216-564 228-538 (552)
276 PF12862 Apc5: Anaphase-promot 97.4 0.0062 1.3E-07 43.9 11.3 83 210-292 8-91 (94)
277 PF13176 TPR_7: Tetratricopept 97.3 0.00063 1.4E-08 38.5 4.6 31 117-147 1-31 (36)
278 PF12862 Apc5: Anaphase-promot 97.3 0.0083 1.8E-07 43.3 11.0 79 252-332 8-89 (94)
279 PF07079 DUF1347: Protein of u 97.3 0.16 3.5E-06 46.9 45.2 138 403-560 374-520 (549)
280 PF05843 Suf: Suppressor of fo 97.2 0.011 2.5E-07 53.0 14.0 136 244-399 3-139 (280)
281 PF13176 TPR_7: Tetratricopept 97.2 0.0011 2.3E-08 37.5 4.9 33 202-234 1-33 (36)
282 PF07719 TPR_2: Tetratricopept 97.2 0.0011 2.3E-08 37.1 4.9 29 451-479 2-30 (34)
283 PF05843 Suf: Suppressor of fo 97.2 0.02 4.4E-07 51.4 14.9 136 410-567 3-139 (280)
284 COG3118 Thioredoxin domain-con 97.2 0.031 6.7E-07 48.5 14.8 154 371-553 138-291 (304)
285 KOG1538 Uncharacterized conser 97.0 0.33 7.1E-06 47.0 21.3 183 205-435 637-831 (1081)
286 PF13181 TPR_8: Tetratricopept 97.0 0.0017 3.7E-08 36.3 4.0 29 493-521 2-30 (34)
287 KOG1538 Uncharacterized conser 96.9 0.21 4.5E-06 48.3 19.0 186 246-478 636-832 (1081)
288 PF13181 TPR_8: Tetratricopept 96.9 0.0033 7.2E-08 35.0 4.7 31 368-398 2-32 (34)
289 KOG2041 WD40 repeat protein [G 96.9 0.52 1.1E-05 46.2 33.8 66 115-184 692-760 (1189)
290 PF11817 Foie-gras_1: Foie gra 96.9 0.29 6.3E-06 43.0 19.0 92 215-308 153-244 (247)
291 COG3118 Thioredoxin domain-con 96.9 0.13 2.9E-06 44.7 15.9 136 71-233 134-269 (304)
292 PF10579 Rapsyn_N: Rapsyn N-te 96.8 0.024 5.3E-07 37.9 8.7 73 71-150 6-78 (80)
293 KOG4322 Anaphase-promoting com 96.7 0.48 1E-05 43.6 24.0 198 193-396 266-471 (482)
294 KOG0376 Serine-threonine phosp 96.7 0.0037 8E-08 57.6 5.9 112 412-547 8-119 (476)
295 KOG0376 Serine-threonine phosp 96.7 0.0025 5.4E-08 58.7 4.7 100 454-570 8-107 (476)
296 KOG4507 Uncharacterized conser 96.6 0.27 5.9E-06 47.0 17.3 98 457-571 614-712 (886)
297 PF13174 TPR_6: Tetratricopept 96.5 0.0048 1E-07 34.1 3.6 29 493-521 1-29 (33)
298 KOG1308 Hsp70-interacting prot 96.5 0.0014 3E-08 57.4 1.8 96 460-572 124-219 (377)
299 COG4649 Uncharacterized protei 96.4 0.35 7.6E-06 38.3 14.7 147 332-520 47-195 (221)
300 PF13174 TPR_6: Tetratricopept 96.3 0.011 2.5E-07 32.5 4.4 33 535-568 1-33 (33)
301 PF04910 Tcf25: Transcriptiona 96.2 0.39 8.4E-06 44.8 16.3 158 65-233 34-226 (360)
302 PF07079 DUF1347: Protein of u 96.2 1 2.2E-05 41.9 40.4 140 360-517 372-520 (549)
303 PF10516 SHNi-TPR: SHNi-TPR; 96.2 0.016 3.5E-07 32.8 4.6 36 493-528 2-37 (38)
304 COG0790 FOG: TPR repeat, SEL1 96.1 1.1 2.3E-05 40.9 20.2 179 294-520 53-265 (292)
305 KOG2581 26S proteasome regulat 96.0 1.2 2.5E-05 40.9 21.2 141 125-271 136-276 (493)
306 PRK14707 hypothetical protein; 96.0 3.7 8.1E-05 46.4 27.7 426 120-549 794-1224(2710)
307 KOG1308 Hsp70-interacting prot 96.0 0.0043 9.3E-08 54.4 2.2 91 415-521 121-211 (377)
308 PF10579 Rapsyn_N: Rapsyn N-te 95.9 0.13 2.8E-06 34.5 8.3 71 161-236 9-79 (80)
309 PF14853 Fis1_TPR_C: Fis1 C-te 95.9 0.077 1.7E-06 32.9 6.8 42 493-542 2-43 (53)
310 PF09613 HrpB1_HrpK: Bacterial 95.8 0.2 4.4E-06 39.5 10.5 103 449-569 9-111 (160)
311 KOG4814 Uncharacterized conser 95.8 2 4.4E-05 41.9 34.5 107 408-524 354-460 (872)
312 COG5187 RPN7 26S proteasome re 95.8 1.2 2.6E-05 38.7 16.8 137 256-400 89-225 (412)
313 PF04910 Tcf25: Transcriptiona 95.7 1.5 3.3E-05 40.9 17.6 151 364-523 37-224 (360)
314 KOG1258 mRNA processing protei 95.6 2.3 5.1E-05 41.3 40.0 413 82-567 52-473 (577)
315 PF12739 TRAPPC-Trs85: ER-Golg 95.6 1.9 4.1E-05 41.5 18.6 177 244-440 210-402 (414)
316 PF04781 DUF627: Protein of un 95.6 0.39 8.5E-06 35.0 10.5 102 456-563 2-107 (111)
317 PF11817 Foie-gras_1: Foie gra 95.6 1.5 3.2E-05 38.7 22.7 186 202-392 12-243 (247)
318 PF11207 DUF2989: Protein of u 95.6 0.97 2.1E-05 37.3 13.9 78 465-554 121-198 (203)
319 PF10516 SHNi-TPR: SHNi-TPR; 95.6 0.048 1.1E-06 30.9 4.7 35 451-485 2-36 (38)
320 COG5187 RPN7 26S proteasome re 95.6 1.4 3.1E-05 38.2 16.1 135 172-313 89-223 (412)
321 KOG0687 26S proteasome regulat 95.5 1.5 3.2E-05 38.9 15.3 131 262-400 84-214 (393)
322 PF04781 DUF627: Protein of un 95.4 0.37 8E-06 35.2 9.8 102 248-353 2-107 (111)
323 PF14561 TPR_20: Tetratricopep 95.4 0.11 2.4E-06 36.9 7.1 44 470-521 8-51 (90)
324 PRK14707 hypothetical protein; 95.3 6.7 0.00015 44.5 26.5 429 120-552 710-1143(2710)
325 PF04190 DUF410: Protein of un 95.3 1.9 4.1E-05 38.2 25.1 231 254-549 2-243 (260)
326 COG0790 FOG: TPR repeat, SEL1 95.2 2.5 5.4E-05 38.6 21.7 166 335-548 52-236 (292)
327 PF11207 DUF2989: Protein of u 95.1 1.2 2.6E-05 36.8 13.1 82 253-344 117-198 (203)
328 PF12739 TRAPPC-Trs85: ER-Golg 94.9 3.8 8.2E-05 39.4 20.2 178 201-400 209-403 (414)
329 PRK10941 hypothetical protein; 94.9 0.23 4.9E-06 43.8 9.2 76 492-576 181-256 (269)
330 KOG0687 26S proteasome regulat 94.8 2.9 6.2E-05 37.2 19.1 132 175-313 81-212 (393)
331 PF00244 14-3-3: 14-3-3 protei 94.7 2.6 5.6E-05 36.7 19.5 179 161-355 4-200 (236)
332 PRK10941 hypothetical protein; 94.6 0.65 1.4E-05 41.0 11.3 65 449-521 180-244 (269)
333 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.38 8.3E-06 29.9 7.1 39 451-497 2-40 (53)
334 KOG2581 26S proteasome regulat 94.5 3.9 8.5E-05 37.7 21.8 143 83-233 138-280 (493)
335 PF00244 14-3-3: 14-3-3 protei 94.4 3.1 6.7E-05 36.2 22.4 185 327-527 4-204 (236)
336 KOG4814 Uncharacterized conser 94.4 5.6 0.00012 39.1 38.6 104 72-188 355-458 (872)
337 PF09613 HrpB1_HrpK: Bacterial 94.4 1 2.2E-05 35.7 10.5 87 407-509 9-95 (160)
338 KOG0686 COP9 signalosome, subu 94.3 2.3 5E-05 39.1 13.8 105 159-268 151-255 (466)
339 PF15015 NYD-SP12_N: Spermatog 94.3 0.88 1.9E-05 41.8 11.3 92 456-555 182-283 (569)
340 COG4976 Predicted methyltransf 94.3 0.12 2.6E-06 42.9 5.5 55 459-521 4-58 (287)
341 PF08424 NRDE-2: NRDE-2, neces 94.1 4.5 9.8E-05 37.3 16.3 125 424-565 47-184 (321)
342 smart00028 TPR Tetratricopepti 94.1 0.07 1.5E-06 28.8 3.0 29 493-521 2-30 (34)
343 PF04053 Coatomer_WDAD: Coatom 94.1 1.1 2.3E-05 43.2 12.4 158 210-434 271-428 (443)
344 KOG3824 Huntingtin interacting 94.1 0.17 3.7E-06 44.0 6.3 72 457-544 123-194 (472)
345 KOG0686 COP9 signalosome, subu 93.9 1.5 3.1E-05 40.3 11.9 112 277-394 145-256 (466)
346 COG3947 Response regulator con 93.8 0.94 2E-05 39.4 10.1 79 451-537 280-358 (361)
347 COG3629 DnrI DNA-binding trans 93.8 2.3 5.1E-05 37.6 12.8 75 449-531 152-226 (280)
348 smart00028 TPR Tetratricopepti 93.8 0.15 3.1E-06 27.4 4.0 29 451-479 2-30 (34)
349 PF08626 TRAPPC9-Trs120: Trans 93.8 6.6 0.00014 43.8 19.2 192 241-438 241-475 (1185)
350 PF08424 NRDE-2: NRDE-2, neces 93.8 5.6 0.00012 36.7 19.5 147 277-437 14-183 (321)
351 TIGR02561 HrpB1_HrpK type III 93.6 1 2.2E-05 35.0 9.1 85 451-551 11-95 (153)
352 KOG3783 Uncharacterized conser 93.6 7.2 0.00016 37.6 36.2 227 278-521 263-520 (546)
353 KOG1258 mRNA processing protei 93.3 8.6 0.00019 37.6 40.8 408 66-548 74-489 (577)
354 PF07721 TPR_4: Tetratricopept 93.1 0.14 3E-06 26.2 2.6 25 493-517 2-26 (26)
355 PF04053 Coatomer_WDAD: Coatom 92.9 5.1 0.00011 38.7 14.7 26 368-393 348-373 (443)
356 PF15015 NYD-SP12_N: Spermatog 92.9 5.3 0.00012 37.0 13.7 106 120-233 181-295 (569)
357 COG4649 Uncharacterized protei 92.8 4.2 9E-05 32.6 14.6 133 76-228 63-195 (221)
358 KOG4322 Anaphase-promoting com 92.8 8.4 0.00018 35.9 29.5 194 320-520 269-470 (482)
359 PF14561 TPR_20: Tetratricopep 92.6 2.1 4.6E-05 30.4 9.0 49 178-234 8-56 (90)
360 PF07721 TPR_4: Tetratricopept 92.4 0.19 4.2E-06 25.7 2.7 24 451-474 2-25 (26)
361 KOG1914 mRNA cleavage and poly 92.4 11 0.00024 36.4 34.7 325 159-521 21-395 (656)
362 KOG2114 Vacuolar assembly/sort 92.3 5.9 0.00013 40.3 14.4 49 347-397 350-398 (933)
363 PF04190 DUF410: Protein of un 92.2 8 0.00017 34.3 23.8 158 127-312 2-171 (260)
364 PF10952 DUF2753: Protein of u 92.0 3.7 8E-05 30.6 9.5 72 285-356 4-82 (140)
365 KOG0128 RNA-binding protein SA 92.0 16 0.00035 37.4 35.5 437 66-554 108-554 (881)
366 KOG3364 Membrane protein invol 91.9 3.6 7.7E-05 31.4 9.6 74 450-537 32-108 (149)
367 KOG3364 Membrane protein invol 91.9 2.5 5.4E-05 32.2 8.8 76 491-571 31-107 (149)
368 PRK13184 pknD serine/threonine 90.8 26 0.00056 37.6 31.7 108 80-202 484-591 (932)
369 TIGR03504 FimV_Cterm FimV C-te 90.8 0.71 1.5E-05 27.3 4.2 34 537-571 2-35 (44)
370 KOG2561 Adaptor protein NUB1, 90.7 10 0.00022 35.4 13.1 115 242-356 163-299 (568)
371 KOG2908 26S proteasome regulat 90.6 13 0.00028 33.6 15.9 101 251-352 84-185 (380)
372 COG5107 RNA14 Pre-mRNA 3'-end 90.5 16 0.00034 34.5 30.5 215 320-568 298-535 (660)
373 COG4976 Predicted methyltransf 90.4 0.5 1.1E-05 39.5 4.4 62 501-571 4-65 (287)
374 TIGR02561 HrpB1_HrpK type III 90.3 4.5 9.8E-05 31.6 9.2 86 366-466 9-94 (153)
375 TIGR03504 FimV_Cterm FimV C-te 90.2 0.99 2.2E-05 26.7 4.4 25 496-520 3-27 (44)
376 smart00101 14_3_3 14-3-3 homol 90.1 12 0.00026 32.6 23.1 185 327-524 4-203 (244)
377 cd02682 MIT_AAA_Arch MIT: doma 89.9 2.8 6E-05 28.3 6.9 44 70-114 5-48 (75)
378 KOG1310 WD40 repeat protein [G 89.8 2.7 5.9E-05 40.1 9.1 86 464-566 388-476 (758)
379 PF05053 Menin: Menin; InterP 89.8 15 0.00032 35.8 13.9 86 269-357 264-351 (618)
380 PF10255 Paf67: RNA polymerase 89.7 4.9 0.00011 37.8 10.7 76 159-234 123-198 (404)
381 KOG3824 Huntingtin interacting 89.4 1.3 2.9E-05 38.8 6.4 71 414-500 122-192 (472)
382 COG3629 DnrI DNA-binding trans 89.3 12 0.00027 33.2 12.3 69 159-235 154-222 (280)
383 PF10255 Paf67: RNA polymerase 89.0 0.9 1.9E-05 42.5 5.6 75 452-526 124-198 (404)
384 PF10952 DUF2753: Protein of u 88.3 8.9 0.00019 28.7 11.5 75 453-527 4-85 (140)
385 PRK13184 pknD serine/threonine 88.2 41 0.00088 36.2 30.6 107 121-235 481-587 (932)
386 PF08311 Mad3_BUB1_I: Mad3/BUB 88.1 10 0.00022 29.1 10.6 87 338-435 40-126 (126)
387 smart00101 14_3_3 14-3-3 homol 87.8 18 0.00039 31.6 21.6 182 203-397 4-201 (244)
388 KOG1497 COP9 signalosome, subu 87.7 20 0.00044 32.1 19.7 111 198-309 101-211 (399)
389 KOG4563 Cell cycle-regulated h 87.7 2.8 6.1E-05 37.9 7.4 62 493-554 42-103 (400)
390 cd02683 MIT_1 MIT: domain cont 87.1 5.6 0.00012 27.2 7.1 48 71-119 6-53 (77)
391 KOG2422 Uncharacterized conser 87.1 32 0.0007 33.8 14.9 156 64-231 277-450 (665)
392 KOG4014 Uncharacterized conser 87.0 15 0.00032 29.9 12.8 148 222-400 50-237 (248)
393 cd02682 MIT_AAA_Arch MIT: doma 87.0 7.4 0.00016 26.3 8.2 35 493-527 7-41 (75)
394 KOG4014 Uncharacterized conser 86.9 15 0.00033 29.8 15.0 174 264-485 50-239 (248)
395 PF04212 MIT: MIT (microtubule 86.4 5.6 0.00012 26.5 6.9 45 71-116 5-49 (69)
396 KOG4563 Cell cycle-regulated h 85.8 3.4 7.3E-05 37.4 6.9 64 159-222 42-105 (400)
397 KOG2422 Uncharacterized conser 85.8 38 0.00082 33.3 18.3 177 296-481 252-450 (665)
398 KOG1497 COP9 signalosome, subu 85.7 26 0.00057 31.4 21.1 112 447-562 100-212 (399)
399 KOG0508 Ankyrin repeat protein 85.5 0.72 1.6E-05 42.9 2.8 74 474-547 319-392 (615)
400 KOG2561 Adaptor protein NUB1, 85.3 11 0.00025 35.2 10.0 132 450-582 163-315 (568)
401 PF07720 TPR_3: Tetratricopept 84.9 4.6 9.9E-05 22.7 4.8 29 493-521 2-32 (36)
402 COG3914 Spy Predicted O-linked 84.7 19 0.00041 35.4 11.6 98 456-570 73-177 (620)
403 KOG2908 26S proteasome regulat 84.5 31 0.00068 31.3 15.6 95 377-473 85-180 (380)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 84.3 17 0.00036 28.0 11.8 87 129-227 40-126 (126)
405 cd02678 MIT_VPS4 MIT: domain c 84.2 9.7 0.00021 25.9 7.3 47 71-118 6-52 (75)
406 PRK15180 Vi polysaccharide bio 84.0 5.9 0.00013 37.4 7.8 123 420-567 301-423 (831)
407 COG3947 Response regulator con 83.9 19 0.0004 31.9 10.2 73 410-490 281-353 (361)
408 smart00745 MIT Microtubule Int 83.0 12 0.00027 25.5 7.6 44 71-115 8-51 (77)
409 PF12854 PPR_1: PPR repeat 82.7 3.3 7.2E-05 22.8 3.7 26 367-392 7-32 (34)
410 PF04212 MIT: MIT (microtubule 82.5 12 0.00026 24.9 7.7 42 496-537 9-51 (69)
411 PF09670 Cas_Cas02710: CRISPR- 82.2 47 0.001 31.6 17.3 67 116-187 132-198 (379)
412 KOG0546 HSP90 co-chaperone CPR 81.5 4 8.7E-05 36.9 5.6 125 413-553 227-362 (372)
413 PF12854 PPR_1: PPR repeat 81.4 3.8 8.2E-05 22.6 3.7 28 322-349 5-32 (34)
414 COG2912 Uncharacterized conser 81.3 17 0.00036 32.0 9.1 65 449-521 180-244 (269)
415 KOG1310 WD40 repeat protein [G 81.2 10 0.00023 36.4 8.4 84 422-521 388-474 (758)
416 cd02684 MIT_2 MIT: domain cont 81.1 15 0.00032 25.0 7.3 48 71-119 6-53 (75)
417 PF10373 EST1_DNA_bind: Est1 D 80.8 5.5 0.00012 35.9 6.8 62 469-546 1-62 (278)
418 cd02656 MIT MIT: domain contai 80.5 15 0.00033 24.9 7.5 45 72-117 7-51 (75)
419 PF10858 DUF2659: Protein of u 80.4 28 0.0006 27.7 12.8 132 422-566 71-202 (220)
420 PF09670 Cas_Cas02710: CRISPR- 79.8 57 0.0012 31.1 17.3 139 326-482 133-273 (379)
421 PHA02537 M terminase endonucle 79.7 16 0.00034 31.4 8.4 109 124-234 92-212 (230)
422 PF07720 TPR_3: Tetratricopept 79.3 6.2 0.00013 22.2 4.0 28 201-228 2-31 (36)
423 KOG2063 Vacuolar assembly/sort 79.1 55 0.0012 34.7 13.4 183 326-520 506-712 (877)
424 COG5107 RNA14 Pre-mRNA 3'-end 78.9 62 0.0013 30.9 20.5 232 114-398 301-533 (660)
425 KOG3807 Predicted membrane pro 78.7 51 0.0011 29.8 18.7 53 292-354 194-246 (556)
426 PF10373 EST1_DNA_bind: Est1 D 78.2 45 0.00098 30.0 11.9 62 386-462 1-62 (278)
427 PF13041 PPR_2: PPR repeat fam 78.0 12 0.00026 22.7 5.6 29 283-311 4-32 (50)
428 KOG0276 Vesicle coat complex C 77.9 12 0.00025 36.8 7.7 80 369-479 616-695 (794)
429 KOG0276 Vesicle coat complex C 77.9 27 0.00059 34.4 10.1 83 459-554 646-741 (794)
430 KOG3807 Predicted membrane pro 77.7 55 0.0012 29.6 17.3 122 71-230 184-305 (556)
431 cd02681 MIT_calpain7_1 MIT: do 77.3 20 0.00044 24.4 8.1 31 495-525 9-39 (76)
432 PHA02537 M terminase endonucle 77.2 23 0.00051 30.4 8.7 103 375-479 91-207 (230)
433 PRK15180 Vi polysaccharide bio 77.0 12 0.00025 35.6 7.3 121 378-521 300-420 (831)
434 cd02677 MIT_SNX15 MIT: domain 76.9 19 0.00041 24.5 6.6 47 71-118 6-52 (75)
435 PF07163 Pex26: Pex26 protein; 76.8 53 0.0012 29.1 13.7 140 72-223 36-181 (309)
436 PF04097 Nic96: Nup93/Nic96; 76.8 95 0.0021 32.0 28.3 20 75-95 115-134 (613)
437 KOG2114 Vacuolar assembly/sort 76.8 1E+02 0.0022 32.2 28.0 49 95-145 350-398 (933)
438 COG2912 Uncharacterized conser 75.9 13 0.00028 32.7 6.9 74 493-575 182-255 (269)
439 KOG0508 Ankyrin repeat protein 75.6 7.8 0.00017 36.5 5.8 135 114-254 244-391 (615)
440 KOG4521 Nuclear pore complex, 75.5 1.3E+02 0.0028 32.8 19.3 202 323-568 919-1136(1480)
441 PF01535 PPR: PPR repeat; Int 75.4 5.7 0.00012 20.8 3.3 27 452-478 2-28 (31)
442 PF13041 PPR_2: PPR repeat fam 74.0 15 0.00033 22.3 5.3 29 493-521 4-32 (50)
443 KOG0128 RNA-binding protein SA 72.0 1.3E+02 0.0028 31.4 33.5 152 196-353 109-260 (881)
444 COG3914 Spy Predicted O-linked 72.0 1.1E+02 0.0024 30.5 15.8 114 414-551 73-193 (620)
445 PF10938 YfdX: YfdX protein; 71.9 36 0.00079 27.3 8.2 111 74-186 5-145 (155)
446 TIGR00756 PPR pentatricopeptid 71.1 10 0.00022 20.4 3.8 27 494-520 2-28 (35)
447 cd02681 MIT_calpain7_1 MIT: do 69.4 33 0.00072 23.4 7.6 31 453-483 9-39 (76)
448 PRK09169 hypothetical protein; 68.9 2.6E+02 0.0056 33.5 25.1 15 538-552 709-723 (2316)
449 PF13812 PPR_3: Pentatricopept 68.4 15 0.00033 19.7 4.0 27 494-520 3-29 (34)
450 cd02683 MIT_1 MIT: domain cont 68.0 36 0.00078 23.3 7.9 42 496-537 10-52 (77)
451 PF09205 DUF1955: Domain of un 67.6 51 0.0011 25.4 7.4 53 461-521 97-149 (161)
452 PF05053 Menin: Menin; InterP 65.7 1.5E+02 0.0032 29.5 16.5 56 424-482 295-350 (618)
453 PF04097 Nic96: Nup93/Nic96; 65.4 1.7E+02 0.0037 30.2 22.1 20 121-140 264-283 (613)
454 PF10938 YfdX: YfdX protein; 63.7 14 0.00031 29.5 4.5 109 370-478 5-145 (155)
455 PF08626 TRAPPC9-Trs120: Trans 63.7 2.7E+02 0.0058 31.8 26.6 230 69-312 240-553 (1185)
456 smart00745 MIT Microtubule Int 63.2 45 0.00098 22.7 8.2 29 499-527 15-43 (77)
457 COG3014 Uncharacterized protei 62.7 1.3E+02 0.0027 27.7 17.0 29 451-479 214-242 (449)
458 smart00386 HAT HAT (Half-A-TPR 62.0 20 0.00043 18.8 3.7 30 506-543 1-30 (33)
459 cd02679 MIT_spastin MIT: domai 61.6 51 0.0011 22.7 6.7 33 370-402 11-43 (79)
460 KOG2758 Translation initiation 61.2 1.3E+02 0.0028 27.3 16.3 75 67-147 125-199 (432)
461 KOG2758 Translation initiation 60.5 1.3E+02 0.0029 27.3 17.1 79 274-356 121-199 (432)
462 cd02678 MIT_VPS4 MIT: domain c 60.1 52 0.0011 22.4 8.0 40 499-538 13-53 (75)
463 KOG2582 COP9 signalosome, subu 59.5 58 0.0013 30.1 7.6 110 72-187 103-212 (422)
464 cd02680 MIT_calpain7_2 MIT: do 58.5 56 0.0012 22.3 6.9 33 71-104 6-38 (75)
465 PF14863 Alkyl_sulf_dimr: Alky 58.4 62 0.0013 25.5 6.9 54 493-554 71-124 (141)
466 PRK12798 chemotaxis protein; R 57.4 1.8E+02 0.0039 27.8 21.7 165 122-312 119-287 (421)
467 KOG1920 IkappaB kinase complex 57.4 3E+02 0.0066 30.4 24.0 62 331-394 959-1026(1265)
468 KOG4521 Nuclear pore complex, 56.1 3.2E+02 0.0069 30.2 17.9 183 284-479 922-1132(1480)
469 KOG4279 Serine/threonine prote 55.5 1.8E+02 0.004 30.0 10.9 181 280-479 199-395 (1226)
470 cd02656 MIT MIT: domain contai 54.7 65 0.0014 21.8 8.2 30 498-527 12-41 (75)
471 PF07163 Pex26: Pex26 protein; 54.1 1.6E+02 0.0035 26.3 12.6 138 161-306 38-182 (309)
472 cd02680 MIT_calpain7_2 MIT: do 53.2 70 0.0015 21.8 7.1 22 126-147 17-38 (75)
473 COG5091 SGT1 Suppressor of G2 53.0 23 0.00051 30.7 4.1 58 256-313 53-110 (368)
474 cd02679 MIT_spastin MIT: domai 52.8 74 0.0016 22.0 7.7 29 502-530 18-46 (79)
475 COG3014 Uncharacterized protei 52.0 2E+02 0.0042 26.6 17.2 94 120-231 63-156 (449)
476 smart00671 SEL1 Sel1-like repe 51.6 31 0.00067 18.7 3.4 29 493-521 2-34 (36)
477 KOG3024 Uncharacterized conser 50.3 1.9E+02 0.0041 25.9 14.1 84 496-583 89-173 (312)
478 KOG0546 HSP90 co-chaperone CPR 48.8 42 0.00092 30.8 5.2 114 372-501 227-352 (372)
479 KOG0917 Uncharacterized conser 48.6 98 0.0021 27.1 7.0 22 81-103 313-334 (338)
480 PF09311 Rab5-bind: Rabaptin-l 48.0 68 0.0015 26.6 6.1 47 487-533 135-181 (181)
481 TIGR02710 CRISPR-associated pr 45.7 2.7E+02 0.0059 26.4 14.0 59 413-474 135-195 (380)
482 PF12753 Nro1: Nuclear pore co 45.3 89 0.0019 29.4 6.8 69 469-540 330-403 (404)
483 PF09205 DUF1955: Domain of un 44.8 1.5E+02 0.0032 23.1 7.4 53 419-479 97-149 (161)
484 PF08238 Sel1: Sel1 repeat; I 44.3 56 0.0012 18.1 3.9 28 493-520 2-36 (39)
485 KOG3677 RNA polymerase I-assoc 44.1 1.2E+02 0.0025 28.8 7.2 67 452-524 237-304 (525)
486 COG1747 Uncharacterized N-term 44.1 3.3E+02 0.0072 26.9 22.5 212 269-519 53-286 (711)
487 cd02684 MIT_2 MIT: domain cont 43.7 1E+02 0.0022 21.0 8.0 40 500-539 14-54 (75)
488 KOG2063 Vacuolar assembly/sort 43.5 4.6E+02 0.0099 28.4 14.5 189 285-478 507-712 (877)
489 KOG1938 Protein with predicted 41.6 2.7E+02 0.0058 29.9 10.0 96 381-479 289-384 (960)
490 KOG2582 COP9 signalosome, subu 40.9 3.1E+02 0.0067 25.7 12.8 109 158-270 102-211 (422)
491 KOG4151 Myosin assembly protei 40.7 64 0.0014 33.2 5.6 88 415-514 60-149 (748)
492 KOG4279 Serine/threonine prote 40.5 3.6E+02 0.0078 28.1 10.3 183 320-521 197-395 (1226)
493 PRK09169 hypothetical protein; 40.2 7.7E+02 0.017 30.1 30.3 38 497-534 752-789 (2316)
494 KOG0739 AAA+-type ATPase [Post 39.9 2.1E+02 0.0046 25.9 7.9 19 212-230 22-40 (439)
495 COG4455 ImpE Protein of avirul 39.5 2.5E+02 0.0054 24.2 8.9 55 459-521 10-64 (273)
496 PF14863 Alkyl_sulf_dimr: Alky 39.3 1.9E+02 0.0041 22.8 8.3 51 451-509 71-121 (141)
497 TIGR02710 CRISPR-associated pr 38.4 3.6E+02 0.0078 25.7 15.0 61 120-182 135-195 (380)
498 PF11846 DUF3366: Domain of un 37.8 1.4E+02 0.0029 25.1 6.6 33 488-521 141-173 (193)
499 cd02677 MIT_SNX15 MIT: domain 36.9 1.4E+02 0.003 20.4 7.5 61 487-547 1-62 (75)
500 COG5091 SGT1 Suppressor of G2 36.9 1.6E+02 0.0034 26.0 6.5 80 216-297 55-134 (368)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-47 Score=338.37 Aligned_cols=399 Identities=20% Similarity=0.240 Sum_probs=330.8
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 007930 65 LDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV 144 (584)
Q Consensus 65 ~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 144 (584)
...|.-++++..+|.++..+|+ ++.|+.+|+.++++ .|..+++|.++|.++...|+.+.|..+|..++++
T Consensus 110 r~~~q~ae~ysn~aN~~kerg~-~~~al~~y~~aiel---------~p~fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILKERGQ-LQDALALYRAAIEL---------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred hccchHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhc---------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 3566777888888888888888 88888888888875 5667888888888888888888888888888887
Q ss_pred HHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 007930 145 VDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCK 224 (584)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (584)
.+... .+...+|..+...|+..+|...|.++++. .|..+.+|.+||.++..+|+...|+..|+
T Consensus 180 nP~l~---------ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~~Gei~~aiq~y~ 242 (966)
T KOG4626|consen 180 NPDLY---------CARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNAQGEIWLAIQHYE 242 (966)
T ss_pred Ccchh---------hhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhhcchHHHHHHHHH
Confidence 53211 34667888888888888888888888887 77888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHH
Q 007930 225 KILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFS 304 (584)
Q Consensus 225 ~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 304 (584)
+++++.|...+ +|.++|.+|...+.+++|+..|.+|+.+ .|..+.++.++|.+|+.+|..+-|+..
T Consensus 243 eAvkldP~f~d--------AYiNLGnV~ke~~~~d~Avs~Y~rAl~l------rpn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 243 EAVKLDPNFLD--------AYINLGNVYKEARIFDRAVSCYLRALNL------RPNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred HhhcCCCcchH--------HHhhHHHHHHHHhcchHHHHHHHHHHhc------CCcchhhccceEEEEeccccHHHHHHH
Confidence 88887765553 4888888888888888888888888764 777888888888888888888888888
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHH
Q 007930 305 YQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384 (584)
Q Consensus 305 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 384 (584)
|++++++ .|....++++||..+...|+..+|..+|.+++.+.. ..+.++++||.+|..+|.++
T Consensus 309 Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p---------~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 309 YKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP---------NHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred HHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC---------ccHHHHHHHHHHHHHhccch
Confidence 8888887 788888888888888888888888888888888863 34678888888888888888
Q ss_pred HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC
Q 007930 385 EALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY 464 (584)
Q Consensus 385 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (584)
+|..+|.++++..+.. +....+||.+|.++|++++|+.+|++++.+ .|..+.++.++|..|..+|
T Consensus 372 ~A~~ly~~al~v~p~~-------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 372 EATRLYLKALEVFPEF-------AAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHHHHhhChhh-------hhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhh
Confidence 8888888888887766 667778888888888888888888888885 5667888888888888888
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 465 RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 465 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
+.+.|+.+|.+|+.+ +|..++++.+||.+|...|+..+|+..|++++.+ .|+.++++.+++.++
T Consensus 437 ~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--------kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--------KPDFPDAYCNLLHCL 500 (966)
T ss_pred hHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--------CCCCchhhhHHHHHH
Confidence 888888888888888 8888888888888888888888888888888888 788888888888887
Q ss_pred HHhchHHH
Q 007930 545 KETGRARN 552 (584)
Q Consensus 545 ~~~g~~~~ 552 (584)
.-.-+|.+
T Consensus 501 q~vcdw~D 508 (966)
T KOG4626|consen 501 QIVCDWTD 508 (966)
T ss_pred HHHhcccc
Confidence 77666555
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-47 Score=338.04 Aligned_cols=417 Identities=20% Similarity=0.256 Sum_probs=376.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHH-------------------------HhhcCCCchhHHHHHHHHHHHHHHhc
Q 007930 74 LLKLARETISSGDNPNKALDYAIRASKSF-------------------------ERFSGSGQELELVMSLHMLAAIYCSL 128 (584)
Q Consensus 74 l~~~a~~~~~~g~~~~~A~~~~~~al~~~-------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (584)
.+.+|...++.|+ |.+|.+++...-..- .........+..+++|.++|.++...
T Consensus 51 ~l~lah~~yq~gd-~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGD-YKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccC-HHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 6778888888888 888888775432210 00000223567889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 007930 129 GRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208 (584)
Q Consensus 129 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 208 (584)
|++++|+.+|+.++++.++ . +.+|.++|.++...|+.+.|...|..++++ +|...-+...+|.
T Consensus 130 g~~~~al~~y~~aiel~p~-----f----ida~inla~al~~~~~~~~a~~~~~~alql--------nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-----F----IDAYINLAAALVTQGDLELAVQCFFEALQL--------NPDLYCARSDLGN 192 (966)
T ss_pred chHHHHHHHHHHHHhcCch-----h----hHHHhhHHHHHHhcCCCcccHHHHHHHHhc--------CcchhhhhcchhH
Confidence 9999999999999988532 2 256999999999999999999999999999 8999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 007930 209 AHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSI 288 (584)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 288 (584)
++...|+..+|..+|.++++..+.. +.+|.++|.++..+|+...|+.+|++|+.+ +|....+|.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAvkl------dP~f~dAYiNL 258 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKL------DPNFLDAYINL 258 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhhcC------CCcchHHHhhH
Confidence 9999999999999999999976633 456999999999999999999999999885 89999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 007930 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIAN 368 (584)
Q Consensus 289 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 368 (584)
|.+|...+.+++|+..|.+++.+ .|..+.++.++|.+|..+|..+-|+..|++++++. |....
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---------P~F~~ 321 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---------PNFPD 321 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC---------CCchH
Confidence 99999999999999999999998 79999999999999999999999999999999985 44678
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF 448 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 448 (584)
+++++|..+...|+..+|..+|.+++.+.+.. +.+.++||.+|..+|.+++|..+|.++++. .+.
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h-------adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~ 386 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNH-------ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPE 386 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------Chh
Confidence 99999999999999999999999999998877 778899999999999999999999999996 556
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
.+.+..+||.+|.++|++++|+.+|++++.+ .|..++++.++|.+|..+|+...|+.+|.+|+.+
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~------- 451 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI------- 451 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc-------
Confidence 7889999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 529 ANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+|..++++.+||.+|...|+..+|+ ..++.++...|+.++.
T Consensus 452 -nPt~AeAhsNLasi~kDsGni~~AI-~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 452 -NPTFAEAHSNLASIYKDSGNIPEAI-QSYRTALKLKPDFPDA 492 (966)
T ss_pred -CcHHHHHHhhHHHHhhccCCcHHHH-HHHHHHHccCCCCchh
Confidence 9999999999999999999999999 8888999888876554
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=2.4e-32 Score=252.35 Aligned_cols=419 Identities=37% Similarity=0.463 Sum_probs=348.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
.+.....++..++.....+.++.+.+....+++...++.. .......+......+...+.+++|....++......
T Consensus 84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~----~~~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~ 159 (508)
T KOG1840|consen 84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSV----AQLEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPV 159 (508)
T ss_pred cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHhhhhhcccccccccch
Confidence 4555666777777777777767888888888777666543 111112344556666667777777776665432210
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
...++......-+.+..+......+.+..+..+..+|....+...++..|..+|+|++|+..++.+
T Consensus 160 --------------~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~A 225 (508)
T KOG1840|consen 160 --------------KDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQA 225 (508)
T ss_pred --------------hHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111333333333333666666777777777788889999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (584)
+++..+..+. +++.+......+|.+|..++++.+|+..|+
T Consensus 226 l~~l~k~~G~----------------------------------------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~ 265 (508)
T KOG1840|consen 226 LRILEKTSGL----------------------------------------KHLVVASMLNILALVYRSLGKYDEAVNLYE 265 (508)
T ss_pred HHHHHHccCc----------------------------------------cCHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9986554432 244455555679999999999999999999
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHH
Q 007930 307 KGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEA 386 (584)
Q Consensus 307 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 386 (584)
+|+.+.+...|+++|..+.++.+||.+|...|++++|..++++++++.++. .+..++.+...+.+++.++..++++++|
T Consensus 266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-LGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 999999999999999999999999999999999999999999999999984 5888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCc-ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC
Q 007930 387 LKLLQKAMKLLEDTPGYH-STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR 465 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (584)
..++++++++..+.++.. ..++.++.++|.+|..+|++++|.++|++++.+.++.++.........++++|..|.+.++
T Consensus 345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 999999999999887754 4899999999999999999999999999999999999887778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
+.+|...|.++..+. +..|+++|+....+.+|+.+|..+|++++|+++.++++...+..+|..+|.....-..++....
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADLSK 503 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999988888777666665543
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1e-32 Score=275.94 Aligned_cols=419 Identities=18% Similarity=0.148 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
+..+..+|..++..|+ |++|+..|++++.+. |+ ...+.++|.+|..+|++++|+..+++++++.
T Consensus 127 a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~---------p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----- 190 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKD-FNKAIKLYSKAIECK---------PD-PVYYSNRAACHNALGDWEKVVEDTTAALELD----- 190 (615)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----
Confidence 4557889999999999 999999999999752 22 3468899999999999999999999999874
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
++.. .++..+|.+|..+|++++|+..|..+...- ........... ...+. ..+...+...++..
T Consensus 191 p~~~----~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-----~~~~~~~~~~~--~~~l~-----~~a~~~~~~~l~~~ 254 (615)
T TIGR00990 191 PDYS----KALNRRANAYDGLGKYADALLDLTASCIID-----GFRNEQSAQAV--ERLLK-----KFAESKAKEILETK 254 (615)
T ss_pred CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccHHHHHHH--HHHHH-----HHHHHHHHHHHhcC
Confidence 2232 458899999999999999999887665441 11111111000 00000 01111111111111
Q ss_pred HHhCC-------------------------CCCHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHcCCcchHH
Q 007930 231 REHGH-------------------------SASLEEAADRRLMALVY---EAKADYESALEHLVLASMVMIANGQENEVA 282 (584)
Q Consensus 231 ~~~~~-------------------------~~~~~~a~~~~~l~~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 282 (584)
+.... .........+..++..+ ...+++++|+..|++++... ...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~a 331 (615)
T TIGR00990 255 PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKEA 331 (615)
T ss_pred CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhhH
Confidence 00000 00001112233344332 23478999999999887632 2356778
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
.++..+|.++..+|++++|+..+++++++ .|....++..+|.++...|++++|+..++++++...
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p------- 396 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS------- 396 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------
Confidence 88999999999999999999999999998 688889999999999999999999999999998742
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
....++..+|.++...|++++|+.+|++++.+.+.. ...+..+|.++..+|++++|+..|++++..
T Consensus 397 --~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~----- 462 (615)
T TIGR00990 397 --EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKN----- 462 (615)
T ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 235789999999999999999999999999987655 567789999999999999999999999985
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
.|....++..+|.++...|++++|+..|++++.+..... +........+...+.++...|++++|+.++++++.+
T Consensus 463 ---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l- 537 (615)
T TIGR00990 463 ---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-PMYMNVLPLINKALALFQWKQDFIEAENLCEKALII- 537 (615)
T ss_pred ---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-
Confidence 334567899999999999999999999999999832110 001111122222333445579999999999999998
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 523 EEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
+|+...++..+|.++..+|++++|+ ..++.+++..+
T Consensus 538 -------~p~~~~a~~~la~~~~~~g~~~eAi-~~~e~A~~l~~ 573 (615)
T TIGR00990 538 -------DPECDIAVATMAQLLLQQGDVDEAL-KLFERAAELAR 573 (615)
T ss_pred -------CCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHhc
Confidence 7888889999999999999999999 88888876655
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.6e-32 Score=289.47 Aligned_cols=410 Identities=18% Similarity=0.181 Sum_probs=285.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
.|.....+..+|..+...|+ +++|+..|+++++. .|....++..+|.++...|++++|+..|++++...
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 529 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSI---------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID- 529 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCC-HHHHHHHHHHHHhh---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 34445556666666666666 66666666666653 22234455566666666666666666666666543
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
+.+. .++..++.++...|++++|+..+++++.. +|.....+..++.++...|++++|+..++++
T Consensus 530 ----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 530 ----PKNL----RAILALAGLYLRTGNEEEAVAWLEKAAEL--------NPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred ----cCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111 23556666666666666666666666655 4444556666666677777777777776666
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (584)
++..+.. ...+..+|.++...|++++|+..|++++.. .+....++..+|.++...|++++|+..++
T Consensus 594 ~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 594 ADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLAL------QPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred HHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5433221 234667777777777777777777766553 33444566677777777777777777777
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHH
Q 007930 307 KGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEA 386 (584)
Q Consensus 307 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 386 (584)
++++. .|....++..++.++...|++++|+..++...... +.....+..+|.++...|++++|
T Consensus 660 ~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 660 RALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---------PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------cCChHHHHHHHHHHHHCCCHHHH
Confidence 77665 45556667777777777777777777776665543 12245667788888888888888
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH
Q 007930 387 LKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (584)
+..|++++...+.. ..+..++.++...|++++|+..+++++.. .+....++..+|.++...|++
T Consensus 723 ~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 723 IQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKT--------HPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCH
Confidence 88888888764432 34557788888888888888888888774 233457788888889889999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
++|+.+|+++++. .|....++..++.++...|+ .+|+.++++++.+ .|+....+..+|.++..
T Consensus 787 ~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 787 DKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--------APNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHH
Confidence 9999999998887 67777888888888888888 7788888888887 56677778888999999
Q ss_pred hchHHHHHHHHHHHHHhhhhhh
Q 007930 547 TGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 547 ~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
.|++++|. ..++.+++.+|..
T Consensus 850 ~g~~~~A~-~~~~~a~~~~~~~ 870 (899)
T TIGR02917 850 KGEADRAL-PLLRKAVNIAPEA 870 (899)
T ss_pred cCCHHHHH-HHHHHHHhhCCCC
Confidence 99999998 7888888777653
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.2e-32 Score=288.63 Aligned_cols=405 Identities=21% Similarity=0.261 Sum_probs=353.0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
.+|.....+..++..+...|+ +++|+..+++++.. .|....++..++.++...|++++|+.++++++...
T Consensus 494 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 494 IEPDFFPAAANLARIDIQEGN-PDDAIQRFEKVLTI---------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred hCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh---------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 467778889999999999999 99999999999975 33456778899999999999999999999998764
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
+... ..+..++.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..|++
T Consensus 564 -----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 564 -----PQEI----EPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred -----ccch----hHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222 34778999999999999999999999876 566678899999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHH
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY 305 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (584)
+++..+... ..+..+|.++...|++++|+..+++++.. .+....++..++.++...|++++|+..+
T Consensus 627 ~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 627 LLALQPDSA--------LALLLLADAYAVMKNYAKAITSLKRALEL------KPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HHHhCCCCh--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998754332 45889999999999999999999998763 5566778899999999999999999999
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHH
Q 007930 306 QKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEE 385 (584)
Q Consensus 306 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 385 (584)
+...+. .+.....+..+|.++...|++++|+..|++++..... . ..+..++.++...|++++
T Consensus 693 ~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------~----~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 693 KSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS------S----QNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------c----hHHHHHHHHHHHCCCHHH
Confidence 988765 5667778889999999999999999999999987532 1 467789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC
Q 007930 386 ALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR 465 (584)
Q Consensus 386 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (584)
|...+++++...+.. ..++..+|.++...|++++|+.+|+++++. .+....++..+|.++...|+
T Consensus 755 A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 755 AVKTLEAWLKTHPND-------AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc
Confidence 999999998875543 567889999999999999999999999985 23456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
.+|+.++++++.. .|+....+..+|.++...|++++|..+|+++++. .|....++..++.++.
T Consensus 820 -~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 820 -PRALEYAEKALKL--------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALL 882 (899)
T ss_pred -HHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHH
Confidence 8899999999998 6677788899999999999999999999999998 7888899999999999
Q ss_pred HhchHHHHHHHHHHHHH
Q 007930 546 ETGRARNRKGKSLENLL 562 (584)
Q Consensus 546 ~~g~~~~A~~~~l~~~~ 562 (584)
..|++++|. ..++.++
T Consensus 883 ~~g~~~~A~-~~~~~~~ 898 (899)
T TIGR02917 883 ATGRKAEAR-KELDKLL 898 (899)
T ss_pred HcCCHHHHH-HHHHHHh
Confidence 999999999 7777665
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.4e-30 Score=275.44 Aligned_cols=413 Identities=14% Similarity=0.048 Sum_probs=316.3
Q ss_pred cCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh-----------c--cC
Q 007930 84 SGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDI-----------G--KG 150 (584)
Q Consensus 84 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------~--~~ 150 (584)
.|+ +++|+..++++++. +|....++..+|.++...|++++|+..+++++..... . ..
T Consensus 160 ~g~-~~~A~~~L~~ll~~---------~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~ 229 (1157)
T PRK11447 160 PAQ-RPEAINQLQRLNAD---------YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMP 229 (1157)
T ss_pred Ccc-HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccC
Confidence 466 77888888877765 3445667889999999999999999999987542100 0 00
Q ss_pred ----------------Cchh-hh-HHH--------------HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH
Q 007930 151 ----------------SDRA-LA-KFS--------------GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPR 198 (584)
Q Consensus 151 ----------------~~~~-~~-~~~--------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (584)
+... .. ... ....+|.++...|++++|+..|++++.. +|.
T Consensus 230 ~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~ 301 (1157)
T PRK11447 230 VSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--------NPK 301 (1157)
T ss_pred CChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC
Confidence 0000 00 000 0124488899999999999999999998 677
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 199 VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL------EEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
...++..+|.++...|++++|+.+|+++++..+........ ........+|.++...|++++|+..|++++..
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~- 380 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV- 380 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 88999999999999999999999999999887654321110 01123345688899999999999999999885
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH---------------------------
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS--------------------------- 325 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------------------- 325 (584)
.|....++..+|.++...|++++|+.+|++++++. |....
T Consensus 381 -----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--------p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~ 447 (1157)
T PRK11447 381 -----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--------PGNTNAVRGLANLYRQQSPEKALAFIASLSAS 447 (1157)
T ss_pred -----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 55666788999999999999999999999999762 22222
Q ss_pred ---------------HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 007930 326 ---------------IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLL 390 (584)
Q Consensus 326 ---------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 390 (584)
.+..+|.++...|++++|+..|++++++... ...++..+|.++...|++++|+..+
T Consensus 448 ~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---------~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 448 QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG---------SVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2334566777889999999999999988532 3567889999999999999999999
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----------------------------------
Q 007930 391 QKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV----------------------------------- 435 (584)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~----------------------------------- 435 (584)
+++++..+.. ...++.++..+...+++++|+..++++.
T Consensus 519 ~~al~~~P~~-------~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 519 RRLAQQKPND-------PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHcCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9998765543 2344455555566666666665554321
Q ss_pred --HHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 007930 436 --VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513 (584)
Q Consensus 436 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 513 (584)
.+++. .+.....+..+|.++...|++++|+..|+++++. .|+...++..++.+|...|++++|+.
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 11111 1223456788999999999999999999999998 88888999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
.++++++. .|+...++..+|.++...|++++|. ..++.++...+
T Consensus 659 ~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~~~~ 702 (1157)
T PRK11447 659 QLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQ-RTFNRLIPQAK 702 (1157)
T ss_pred HHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHH-HHHHHHhhhCc
Confidence 99988876 7788888999999999999999999 78888886543
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.1e-30 Score=278.04 Aligned_cols=420 Identities=14% Similarity=0.131 Sum_probs=307.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh
Q 007930 76 KLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL 155 (584)
Q Consensus 76 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (584)
.+|..+...|+ +++|+..|+++++. +|....++..+|.++...|++++|+.+|+++++..+.........
T Consensus 274 ~~G~~~~~~g~-~~~A~~~l~~aL~~---------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 274 AQGLAAVDSGQ-GGKAIPELQQAVRA---------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 44788889999 99999999999986 344577889999999999999999999999998764322111000
Q ss_pred -----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 156 -----AKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 156 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
..+.....+|.++...|++++|+..|++++.+ +|....++..+|.++...|++++|++.|++++++.
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 01123456688999999999999999999998 67778899999999999999999999999999886
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007930 231 REHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG---QENEVAAIDVSIGNIYMSLCRFDEAIFSYQK 307 (584)
Q Consensus 231 ~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (584)
+... .++..++.++. .+++++|+.++++......... ........+..+|.++...|++++|+..|++
T Consensus 416 p~~~--------~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~ 486 (1157)
T PRK11447 416 PGNT--------NAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ 486 (1157)
T ss_pred CCCH--------HHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5432 33566677664 3567777776654322110000 0011123456677777778888888888888
Q ss_pred HHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHH
Q 007930 308 GLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEAL 387 (584)
Q Consensus 308 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 387 (584)
+++. .|....++..+|.+|...|++++|+..+++++..... ....+..++..+...+++++|+
T Consensus 487 Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~---------~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 487 RLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN---------DPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHhCCCHHHHH
Confidence 7776 5666777777888888888888888888777765321 1233344444444455555554
Q ss_pred HHHHHHH-------------------------------------HHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 388 KLLQKAM-------------------------------------KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 388 ~~~~~a~-------------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
..++++. ...... +.....+..+|.++...|++++|+..
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~----p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ----PPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC----CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 4443311 111111 11134567899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
|++++.. .|....++..++.++...|++++|++.++++++. .|+...++..+|.++...|++++
T Consensus 626 y~~al~~--------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~e 689 (1157)
T PRK11447 626 YQRVLTR--------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAA 689 (1157)
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHH
Confidence 9999985 3445689999999999999999999999998876 77777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 511 AIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 511 A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
|..+|++++...... +.....+..+..+|.++...|++++|. ..++.++
T Consensus 690 A~~~~~~al~~~~~~--~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~y~~Al 738 (1157)
T PRK11447 690 AQRTFNRLIPQAKSQ--PPSMESALVLRDAARFEAQTGQPQQAL-ETYKDAM 738 (1157)
T ss_pred HHHHHHHHhhhCccC--CcchhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence 999999998862110 001124566778899999999999999 6666665
No 9
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-30 Score=246.06 Aligned_cols=449 Identities=19% Similarity=0.178 Sum_probs=349.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
-..++..+.++..++..++..|+ |+.+..++..++.. ....+..++.++.+|.+|..+|+|++|..+|.+++.
T Consensus 263 y~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~------t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIKN------TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 34567777888999999999999 99999999999876 234566788899999999999999999999999987
Q ss_pred HHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhC----CHHHH
Q 007930 144 VVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAM----QFDEA 219 (584)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A 219 (584)
..+.. .. -.++.+|..|...|+++.|+.+|++++.. .|+..+++..||.+|...+ ..+.|
T Consensus 336 ~~~d~----~~----l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 336 ADNDN----FV----LPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred cCCCC----cc----ccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 75221 12 23788999999999999999999999988 6888889999999998876 56777
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChh
Q 007930 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 299 (584)
..+..++++..+.. ..+|..++.++....-+.. +.+|..|+.++...+.. --..+++++|..++..|++.
T Consensus 400 ~~~l~K~~~~~~~d--------~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVD--------SEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred HHHHHHHHhccccc--------HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChH
Confidence 77777777765433 3568899988876655555 99999999888877665 56778899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCc--ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDH--LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIY 377 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 377 (584)
+|..+|.+|+..+......+. .......+++|.++...++++.|.+.|...+... |....++..+|...
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---------p~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---------PGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---------chhHHHHHHhhHHH
Confidence 999999999998654332222 2345578999999999999999999999998874 56788888888777
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhCCCCcc-----------------------------cHHHHHHHHHHHHHHh-----cc
Q 007930 378 EALNEHEEALKLLQKAMKLLEDTPGYHS-----------------------------TIAGIEAQMGVMLYVV-----GR 423 (584)
Q Consensus 378 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~l~~~~~~~-----g~ 423 (584)
...++..+|...+..++......+..+. .-+.++..||.++... .+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 7888888888888888776544322110 1123445677766543 22
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 007930 424 YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYD 503 (584)
Q Consensus 424 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 503 (584)
.+++...+.+|++++.+.-. .+|....+-+.+|.++...|++.+|...|.++.+- ..+...+|.++|.||.
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~-~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--------~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLR-NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--------TSDFEDVWLNLAHCYV 691 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHh-cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH--------HhhCCceeeeHHHHHH
Confidence 23444444444444433222 34556788999999999999999999999999887 3345578999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 504 ALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 504 ~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.+|+|..|++.|+.++..+. ..+...++..||+++.+.|++.+|+ ..+..++...|..+.
T Consensus 692 e~~qy~~AIqmYe~~lkkf~------~~~~~~vl~~Lara~y~~~~~~eak-~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFY------KKNRSEVLHYLARAWYEAGKLQEAK-EALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhc------ccCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCCccch
Confidence 99999999999999998742 2345688999999999999999999 777777766665543
No 10
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=6.8e-30 Score=236.18 Aligned_cols=285 Identities=21% Similarity=0.307 Sum_probs=267.8
Q ss_pred cCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 275 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
....|....+...++..|..+|+|++|+..++.++++..+..|.+++........+|.+|..++++++|+..|++++.+.
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34577888888889999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG-YHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
+... |.+++.++.++.+||.+|...|++++|..++++|+++.....+ .+..+...+.+++.++..++++++|..++++
T Consensus 272 e~~~-G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 272 EEVF-GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9864 8899999999999999999999999999999999999998766 4667788899999999999999999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 007930 434 AVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513 (584)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 513 (584)
++++.....+..++..+..+.++|.+|..+|++++|.++|++|+.+.++..+..++.....+.++|..|.+++++.+|..
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 99999977777777889999999999999999999999999999999999998888989999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
.|.++..+. +.+|+++|+....+.+|+.+|..+|++++|. +..+.++
T Consensus 431 l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~-~~~~~~~ 477 (508)
T KOG1840|consen 431 LFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAE-ELEEKVL 477 (508)
T ss_pred HHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHH-HHHHHHH
Confidence 999999999 9999999999999999999999999999999 7777776
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.7e-29 Score=250.36 Aligned_cols=385 Identities=15% Similarity=0.115 Sum_probs=290.5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
...+..+|.++...|+ +++|+..+++++++ +|+...++..+|.+|..+|++++|+..|..+.....
T Consensus 160 ~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l---------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~---- 225 (615)
T TIGR00990 160 PVYYSNRAACHNALGD-WEKVVEDTTAALEL---------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDG---- 225 (615)
T ss_pred hHHHHHHHHHHHHhCC-HHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Confidence 4578999999999999 99999999999986 455788999999999999999999999977654421
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--------------HHH-----------hCCCChHHHHHHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ--------------IEA-----------LGDSDPRVAETCRY 205 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------~~~-----------~~~~~~~~~~~~~~ 205 (584)
....... ..+. ..+. ..+......++... ... ....++.....+..
T Consensus 226 ~~~~~~~-~~~~---~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 226 FRNEQSA-QAVE---RLLK-----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred CccHHHH-HHHH---HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 1111000 0000 0000 00111111111000 000 00002222333444
Q ss_pred HHHHH---HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHH
Q 007930 206 LAEAH---IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVA 282 (584)
Q Consensus 206 la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 282 (584)
++..+ ...+++++|+..|+++++... ..+..+.++..+|.++..+|++++|+..+++++.+ .|...
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l------~P~~~ 365 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL------DPRVT 365 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcH
Confidence 44433 234789999999999987641 23455677999999999999999999999999874 67778
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
..+..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+.+|++++.+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P------- 430 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP------- 430 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-------
Confidence 89999999999999999999999999987 677889999999999999999999999999998853
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.....+..+|.++..+|++++|+..|++++...+.. ..++..+|.++...|++++|+..|++++.+.....
T Consensus 431 --~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 431 --DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA-------PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred --cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 335678899999999999999999999999876655 56788999999999999999999999998743321
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
.. .......+...+.++...|++++|+.++++++.+ +|+...++..+|.++...|++++|+.+|++++++.
T Consensus 502 ~~-~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 502 PM-YMNVLPLINKALALFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred cc-cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 11 1111122222333444479999999999999998 77777899999999999999999999999999984
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-27 Score=226.81 Aligned_cols=428 Identities=16% Similarity=0.169 Sum_probs=350.4
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 007930 62 ESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERS 141 (584)
Q Consensus 62 ~~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 141 (584)
-+...+|+.+..++..|...+..|+ |..|+.+|+.++.+.+... +.....+|.|+.++|+.+.|+..|+++
T Consensus 155 ~Vl~~sp~Nil~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~--------aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 155 FVLKQSPDNILALLGKARIAYNKKD-YRGALKYYKKALRINPACK--------ADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHhhCCcchHHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccC--------CCccchhhhHHHhccchhhHHHHHHHH
Confidence 3455789999999999999999999 9999999999998755432 223336789999999999999999999
Q ss_pred HHHHHhccCCchhhhHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHH
Q 007930 142 IEVVDIGKGSDRALAKFSGYMQLGDTCSSMG---LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDE 218 (584)
Q Consensus 142 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 218 (584)
+++.+. .+.++..||.+-.... .+..+...+.++... ++..+.++..|+..++..|+|..
T Consensus 226 lqLdp~---------~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--------n~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 226 LQLDPT---------CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--------NNENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred HhcChh---------hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHhhcccHHH
Confidence 998631 2244666666655444 455666666666665 56778899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCh
Q 007930 219 AENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRF 298 (584)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 298 (584)
+..+...++.... .....+..++.+|..|..+|+|++|..+|.+++.. ++......++.+|.+|...|++
T Consensus 289 v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----DNDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred HHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----CCCCccccccchhHHHHHhchH
Confidence 9999999887652 34566788999999999999999999999998764 2333466788999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 007930 299 DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG----KLRESKSYCENALRVCAKPAPATAPEEIANGLTEIS 374 (584)
Q Consensus 299 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 374 (584)
+.|..+|++++.. .|....++..+|.+|...+ ..+.|..++.++++.. +....+|..++
T Consensus 359 e~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~---------~~d~~a~l~la 421 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT---------PVDSEAWLELA 421 (1018)
T ss_pred HHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc---------cccHHHHHHHH
Confidence 9999999999988 7888999999999998876 5677888888877764 34578999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC-CC-CchHHHH
Q 007930 375 AIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE-SK-SAFFGIV 452 (584)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~-~~~~~~~ 452 (584)
.++....- ..++.+|..|+.+........ -..+++++|..++..|++.+|...|.+|+..+....+ +. .......
T Consensus 422 ql~e~~d~-~~sL~~~~~A~d~L~~~~~~i--p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 422 QLLEQTDP-WASLDAYGNALDILESKGKQI--PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHhcCh-HHHHHHHHHHHHHHHHcCCCC--CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 98876544 455999999998888774443 3678899999999999999999999999998553311 11 1223456
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
.+++|.++...++++.|.+.|...+.. +|....++..+|......++..+|..+++.++.+ +..
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--------d~~ 562 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--------DSS 562 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--------ccC
Confidence 899999999999999999999999998 9999999999998888899999999999999998 677
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 533 IDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
++.++..+|.++.....+..|. +-++.++
T Consensus 563 np~arsl~G~~~l~k~~~~~a~-k~f~~i~ 591 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAK-KKFETIL 591 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccc-cHHHHHH
Confidence 7888999999999999999998 5444444
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=1.4e-27 Score=237.58 Aligned_cols=333 Identities=14% Similarity=0.083 Sum_probs=185.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 007930 164 LGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAA 243 (584)
Q Consensus 164 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~ 243 (584)
.+..+...|++++|...++..+.. .|....++..+|.+....|++++|+..+++++...|... .
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~--------~ 111 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP--------E 111 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh--------H
Confidence 344455556666666666666555 455555666666666666666666666666665554333 2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccH
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSV 323 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 323 (584)
++..+|.++...|++++|+..+++++.+ .|....++..++.++...|++++|+..+++++.. .|..
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--------~P~~ 177 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLA------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--------VPPR 177 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CCCC
Confidence 3555666666666666666666665543 3444555556666666666666666666655444 2333
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
...+..++ .+...|++++|+..+++++..... . .......++.++...|++++|+..+++++...+..
T Consensus 178 ~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~-----~---~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~--- 245 (656)
T PRK15174 178 GDMIATCL-SFLNKSRLPEDHDLARALLPFFAL-----E---RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG--- 245 (656)
T ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC-----c---chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---
Confidence 33333332 245556666666666655443210 0 01122344555556666666666666665543322
Q ss_pred cccHHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGE----ARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
..++..+|.++...|++++ |+..|++++.+ .|....++..+|.++...|++++|+.++++++.+
T Consensus 246 ----~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 246 ----AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred ----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445556666666666654 55566665553 2233455666666666666666666666666665
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
+|+...++..+|.++...|++++|+..|++++.. +|+.......+|.++...|++++|. ..++
T Consensus 314 --------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~-~~l~ 376 (656)
T PRK15174 314 --------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAE-SVFE 376 (656)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHH-HHHH
Confidence 5555556666666666666666666666666654 4555444555566666666666666 5555
Q ss_pred HHHhhhhh
Q 007930 560 NLLDSNAY 567 (584)
Q Consensus 560 ~~~~~~~~ 567 (584)
.++...|+
T Consensus 377 ~al~~~P~ 384 (656)
T PRK15174 377 HYIQARAS 384 (656)
T ss_pred HHHHhChh
Confidence 55555444
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=1.7e-27 Score=236.97 Aligned_cols=362 Identities=13% Similarity=0.050 Sum_probs=287.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 118 LHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDP 197 (584)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (584)
+...+..+...|++++|+..++..+... +.++ .++..+|.+....|++++|+..+++++.. +|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-----p~~~----~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P 107 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-----KNGR----DLLRRWVISPLASSQPDAVLQVVNKLLAV--------NV 107 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-----CCch----hHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CC
Confidence 3356677888999999999999998775 4444 34788889999999999999999999998 78
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
....++..+|.++...|++++|+..+++++++.|... .++..++.++...|++++|+..+.+.+..
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~--------~a~~~la~~l~~~g~~~eA~~~~~~~~~~------ 173 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS--------QIFALHLRTLVLMDKELQAISLARTQAQE------ 173 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHHCCChHHHHHHHHHHHHh------
Confidence 8888999999999999999999999999998865433 35888999999999999999999866543
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
.+.....+..++ .+...|++++|+..+++++... .+........++.++...|++++|+..+++++...
T Consensus 174 ~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--- 242 (656)
T PRK15174 174 VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--- 242 (656)
T ss_pred CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence 223333444443 4788999999999999887651 12223344566888999999999999999999874
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEE----ALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
+....++..+|.++...|++++ |+..|++++.+.++. ..++..+|.++...|++++|+..+++
T Consensus 243 ------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 243 ------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-------VRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred ------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2236788889999999999986 899999999887654 67788999999999999999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 007930 434 AVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513 (584)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 513 (584)
++.. .|....++..+|.++...|++++|+..|++++.. +|.....+..+|.++...|++++|+.
T Consensus 310 al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 310 SLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHH
Confidence 9985 3445678888999999999999999999999987 77776677778999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHH
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (584)
.|+++++...... .+...++...+...+...+...+.
T Consensus 374 ~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 374 VFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccch
Confidence 9999999843322 122334555566666666555444
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=6.4e-27 Score=238.18 Aligned_cols=440 Identities=11% Similarity=0.001 Sum_probs=329.8
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
.+|.....+.....+....|+ +++|+..+.++... .+..+.++..+|.++...|++++|+..|+++++..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~-~~~A~~~~~~~~~~---------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~ 79 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQ-DAEVITVYNRYRVH---------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE 79 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344555556666777888999 99999998888763 23346678899999999999999999999999875
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
+..+ .++..++.++...|++++|+..++++++. .|.... +..+|.++...|++++|+..+++
T Consensus 80 -----P~~~----~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 80 -----PQND----DYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred -----CCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333 23678999999999999999999999998 677777 99999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-----HcCCh--
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYM-----SLCRF-- 298 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~-- 298 (584)
+++..|... .++..++.++...+..++|+..++++... ... ...........+..+.. ..+++
T Consensus 142 al~~~P~~~--------~~~~~la~~l~~~~~~e~Al~~l~~~~~~-p~~-~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ 211 (765)
T PRK10049 142 ALPRAPQTQ--------QYPTEYVQALRNNRLSAPALGAIDDANLT-PAE-KRDLEADAAAELVRLSFMPTRSEKERYAI 211 (765)
T ss_pred HHHhCCCCH--------HHHHHHHHHHHHCCChHHHHHHHHhCCCC-HHH-HHHHHHHHHHHHHHhhcccccChhHHHHH
Confidence 999877543 34677899999999999999988765420 000 00000111122222222 22334
Q ss_pred -hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 007930 299 -DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIY 377 (584)
Q Consensus 299 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 377 (584)
++|+..++.+++...... ...+....+.......+...|++++|+..|+++++... ..|..+. ..+|.+|
T Consensus 212 ad~Al~~~~~ll~~~~~~p-~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~------~~P~~a~--~~la~~y 282 (765)
T PRK10049 212 ADRALAQYDALEALWHDNP-DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ------IIPPWAQ--RWVASAY 282 (765)
T ss_pred HHHHHHHHHHHHhhcccCC-ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC------CCCHHHH--HHHHHHH
Confidence 677888887776533211 11223333434322344677999999999999876621 1123233 3368899
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc-------CCCCCchHH
Q 007930 378 EALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS-------GESKSAFFG 450 (584)
Q Consensus 378 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~ 450 (584)
...|++++|+.+|++++...+.. ..........++.++...|++++|+..++++....... .........
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 99999999999999987643221 11112344567778899999999999999988752210 000011234
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
.++..++.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++.+ +
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~ 423 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--------E 423 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------C
Confidence 57788999999999999999999999998 7888899999999999999999999999999998 8
Q ss_pred hhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 531 PDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
|+....+..+|.++..+|++++|. ..++.++...|+.....
T Consensus 424 Pd~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 424 PRNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999 99999999988887765
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-26 Score=202.26 Aligned_cols=391 Identities=17% Similarity=0.137 Sum_probs=299.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
.+..+-..|+-++..|+|++|+++|.+|+++++ +.|. .|.+++-||...|++++-++...+++++
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p-----~epi----FYsNraAcY~~lgd~~~Vied~TkALEl------ 178 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCP-----DEPI----FYSNRAACYESLGDWEKVIEDCTKALEL------ 178 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCC-----CCch----hhhhHHHHHHHHhhHHHHHHHHHHHhhc------
Confidence 355566889999999999999999999999973 3332 3889999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHH------------------HHHHHH---------HHhCCCCCH--HHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCK------------------KILEIH---------REHGHSASL--EEAAD 244 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~~---------~~~~~~~~~--~~a~~ 244 (584)
+|....+++..+..+-..|++++|+.-.. +.|+.. ..+..+.-+ .....
T Consensus 179 --~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~s 256 (606)
T KOG0547|consen 179 --NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIAS 256 (606)
T ss_pred --CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 89999999999999999999998865432 222110 000111000 00001
Q ss_pred HHH--------------------H--HHHHHHhc---cHHHHHHHHHHHHHHHHHcCC-------cchHHHHHHHHHHHH
Q 007930 245 RRL--------------------M--ALVYEAKA---DYESALEHLVLASMVMIANGQ-------ENEVAAIDVSIGNIY 292 (584)
Q Consensus 245 ~~~--------------------l--~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~la~~~ 292 (584)
++. + +.-+...+ .|..|...+.+.......... ....+.++...|..+
T Consensus 257 yf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 257 YFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred HHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 110 1 11111112 455666655554433322111 123477888899999
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 007930 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE 372 (584)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 372 (584)
+..|++..|...++.++.+ ++.....|..+|.+|....+.++-...|.++.++..+ ...+|+.
T Consensus 337 fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~---------n~dvYyH 399 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE---------NPDVYYH 399 (606)
T ss_pred hhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC---------CCchhHh
Confidence 9999999999999999998 6666777999999999999999999999999998643 3578999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 007930 373 ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452 (584)
Q Consensus 373 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (584)
.|.+++-.+++++|+.-|++++.+.++. +..+..++.+.++++++++++..|+.+... .|..+.+
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe~-------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Ev 464 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPEN-------AYAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEV 464 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchH
Confidence 9999999999999999999999998877 677889999999999999999999999985 4556789
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA-TYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
+...|.++..++++++|++.|..|+++-.....- +. .+..+.+-|. ++.-.+++..|+.++++|+++ +|
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dp 534 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DP 534 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------Cc
Confidence 9999999999999999999999999983221110 00 1122222222 222358999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
....++..||.+..++|+.++|+ ..++.....
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAi-elFEksa~l 566 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAI-ELFEKSAQL 566 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHH
Confidence 99999999999999999999999 777766543
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=3.4e-25 Score=225.12 Aligned_cols=443 Identities=12% Similarity=-0.003 Sum_probs=316.4
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 007930 62 ESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERS 141 (584)
Q Consensus 62 ~~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 141 (584)
.....+|+...+++.++.++...|+ +++|+.+++++++. +|.....+..++.+ +++++|+..|++.
T Consensus 69 ~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~l---------dP~n~~~~~~La~i----~~~~kA~~~ye~l 134 (987)
T PRK09782 69 YIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKR---------HPGDARLERSLAAI----PVEVKSVTTVEEL 134 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc---------CcccHHHHHHHHHh----ccChhHHHHHHHH
Confidence 3345677778888999999999999 89999999999985 33344444445544 8888888888888
Q ss_pred HHHHHhccCCchhhhH-------------------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--
Q 007930 142 IEVVDIGKGSDRALAK-------------------------------FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ-- 188 (584)
Q Consensus 142 l~~~~~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 188 (584)
+...+........... ....+.++.+|..+|++++|+..+.+.++..
T Consensus 135 ~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl 214 (987)
T PRK09782 135 LAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL 214 (987)
T ss_pred HHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC
Confidence 7765432211100000 0123445888999999999999988876541
Q ss_pred ------------HHH---------hCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC-----------
Q 007930 189 ------------IEA---------LGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS----------- 236 (584)
Q Consensus 189 ------------~~~---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------- 236 (584)
... ..+.-.....++..++..+...|+.++|...+++.-...+..+..
T Consensus 215 ~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~ 294 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYS 294 (987)
T ss_pred CHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhcc
Confidence 000 000001123344566777788888888887777653322211100
Q ss_pred -C---------------------------------------------------------------------------CHH
Q 007930 237 -A---------------------------------------------------------------------------SLE 240 (584)
Q Consensus 237 -~---------------------------------------------------------------------------~~~ 240 (584)
. .+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~ 374 (987)
T PRK09782 295 ANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA 374 (987)
T ss_pred CchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH----------HH-------HHc----------------------------
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASM----------VM-------IAN---------------------------- 275 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~----------~~-------~~~---------------------------- 275 (584)
....+..++......|++++|...++++.. +. ...
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 112233344455566778888777765543 11 000
Q ss_pred --------------CCcch--HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc
Q 007930 276 --------------GQENE--VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK 339 (584)
Q Consensus 276 --------------~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 339 (584)
+..|. ...++.++|.++.. +++.+|+..+.+++.. .|.. .....+|.++...|+
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------~Pd~-~~~L~lA~al~~~Gr 524 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------QPDA-WQHRAVAYQAYQVED 524 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------CCch-HHHHHHHHHHHHCCC
Confidence 01122 55677888888887 7888899988888876 3443 246667777789999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 007930 340 LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLY 419 (584)
Q Consensus 340 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (584)
+++|+..+++++.... . ...+..+|.++...|++++|+.+++++++..+.. ...+..++....
T Consensus 525 ~eeAi~~~rka~~~~p------~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-------~~l~~~La~~l~ 587 (987)
T PRK09782 525 YATALAAWQKISLHDM------S----NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-------NALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHhccCC------C----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHH
Confidence 9999999998754421 1 1346788999999999999999999998764332 334445566666
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 499 (584)
..|++++|+..|++++++ .|. ...+.++|.++...|++++|+..|++++.+ +|+...++.++|
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG 650 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALG 650 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 779999999999999985 333 678999999999999999999999999999 899999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 500 ATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.++...|++++|+..|++++++ +|+...++.++|.++..+|++++|. ..++.++...|+....
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~-~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQ-HYARLVIDDIDNQALI 713 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCCCCchh
Confidence 9999999999999999999998 8999999999999999999999999 8999999888876544
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.9e-26 Score=198.62 Aligned_cols=397 Identities=15% Similarity=0.128 Sum_probs=306.1
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIG 148 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 148 (584)
..+..+-..|..++..|+ |++||.+|.+|+.+.+ +....|.+++-||...|++++.++...+++++.+
T Consensus 113 k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~p---------~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-- 180 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELCP---------DEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-- 180 (606)
T ss_pred HHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcCC---------CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc--
Confidence 446678889999999999 9999999999999732 2355778999999999999999999999998852
Q ss_pred cCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHH------------------HHHHH-----HHHHhCC-CChHH-----
Q 007930 149 KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYE------------------SGLEI-----QIEALGD-SDPRV----- 199 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~-~~~~~----- 199 (584)
+.. .++++.+..+..+|++.+|+.-.. +.|.. ..+.++. ..|..
T Consensus 181 ---~Y~----KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f 253 (606)
T KOG0547|consen 181 ---DYV----KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF 253 (606)
T ss_pred ---HHH----HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 222 568999999999999999875432 22211 1112221 11111
Q ss_pred HHHHHH--------------------H--HHHHHHhC---CHHHHHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHH
Q 007930 200 AETCRY--------------------L--AEAHIQAM---QFDEAENLCKKILEIHREHGHS-----ASLEEAADRRLMA 249 (584)
Q Consensus 200 ~~~~~~--------------------l--a~~~~~~g---~~~~A~~~~~~al~~~~~~~~~-----~~~~~a~~~~~l~ 249 (584)
...++. + +.-....+ .|.+|...+.+........... .....+.++...|
T Consensus 254 i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 111111 1 11111222 4666666666655444333221 1234577888899
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
..++-.|++..|.+.|+.++.+ ++.....|..+|.+|....+.++....|.++.++ +|..+.+|+.
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyH 399 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKL------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYH 399 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhc------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHh
Confidence 9999999999999999999875 5555556899999999999999999999999998 7999999999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHH
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 409 (584)
.|.+++-++++++|+.-|++++.+. |..+..+..++.+.++++++++++..|+.+...+|.. ..
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~---------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~-------~E 463 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLD---------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC-------PE 463 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------ch
Confidence 9999999999999999999999986 4567899999999999999999999999999998887 56
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACL-QLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
++...|.++..++++++|++.|..++++-.......- .+..+.+.|.+.. -.+++..|+.++.+|+++ +
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v--~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------D 533 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV--NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------D 533 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc--cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------C
Confidence 7888999999999999999999999997443211100 1122222332222 348999999999999999 8
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
|..-.++..||.+..++|+.++|+++|+++..+.+.
T Consensus 534 pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 534 PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 998899999999999999999999999999998544
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=7.4e-25 Score=223.16 Aligned_cols=404 Identities=10% Similarity=-0.022 Sum_probs=305.5
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
.+|..+..+..+|..+...|+ +++|+..++++++. .|....++..++.++...|++++|+..++++++..
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~---------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQ-WQNSLTLWQKALSL---------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 467778889999999999999 99999999999986 33345667799999999999999999999999874
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
++.+ . +..+|.++...|++++|+..++++++. .|....++..++.++...+..++|+..+++
T Consensus 114 -----P~~~----~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 114 -----PDKA----N-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred -----CCCH----H-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 2222 3 667899999999999999999999999 788888888999999999999999999987
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHH-----HHhccH---HHHHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHHcC
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVY-----EAKADY---ESALEHLVLASMVMIANGQ-ENEVAAIDVSIGNIYMSLC 296 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~-----~~~g~~---~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g 296 (584)
+.. .|.... .........+..+. ...+++ ++|++.++..+.......+ .+....+.......+...|
T Consensus 176 ~~~-~p~~~~---~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 176 ANL-TPAEKR---DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred CCC-CHHHHH---HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 664 222100 00000111122222 223345 7788888877655433222 2233344443233446779
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 007930 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI 376 (584)
Q Consensus 297 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 376 (584)
++++|+..|+++++.. +..|..+. ..+|.+|...|++++|+.+|++++..... ...........++.+
T Consensus 252 ~~~eA~~~~~~ll~~~-----~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~-----~~~~~~~~~~~L~~a 319 (765)
T PRK10049 252 RYKDVISEYQRLKAEG-----QIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPET-----IADLSDEELADLFYS 319 (765)
T ss_pred hHHHHHHHHHHhhccC-----CCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCC-----CCCCChHHHHHHHHH
Confidence 9999999999987651 11244433 33689999999999999999998864311 101113456677778
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhCC-------CC-cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch
Q 007930 377 YEALNEHEEALKLLQKAMKLLEDTP-------GY-HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF 448 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~~~~~~-------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 448 (584)
+...|++++|+.+++++....+... .. ......++..++.++...|++++|+..+++++.. .|.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~ 391 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APG 391 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 8999999999999999887754311 01 1123456678999999999999999999999885 344
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
...++..+|.++...|++++|+..+++++.+ .|+....+..+|.++...|++++|...++++++.
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~------- 456 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR------- 456 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 4689999999999999999999999999999 8998899999999999999999999999999997
Q ss_pred CChhHHHHH
Q 007930 529 ANPDIDDEK 537 (584)
Q Consensus 529 ~~p~~~~~~ 537 (584)
.|+++.+.
T Consensus 457 -~Pd~~~~~ 464 (765)
T PRK10049 457 -EPQDPGVQ 464 (765)
T ss_pred -CCCCHHHH
Confidence 67776443
No 20
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.95 E-value=4.7e-25 Score=189.32 Aligned_cols=331 Identities=16% Similarity=0.152 Sum_probs=281.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
.-|.-+++.|++...+.+|+.|++.- .++....-.+|..+|.+|+.+++|++|+++...-+.+.+.+ .+....
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvG-----TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGE 94 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVG-----TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGE 94 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhc-----chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhcc
Confidence 45788899999999999999999874 44444444679999999999999999999998888876655 223345
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc--------------------HH
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKAD--------------------YE 259 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~--------------------~~ 259 (584)
+.+..+||..+...|.|++|+.++.+-+.+.++.+ +....+.+++++|.+|...|+ ++
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 67788999999999999999999999999999988 567788899999999998764 56
Q ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc
Q 007930 260 SALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK 339 (584)
Q Consensus 260 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 339 (584)
.|.++|..-+++....++......++-++|..|+.+|+|+.|+...+.-+.+.++.+ +....-.++.++|.++...|+
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhcc
Confidence 778888888888888888888899999999999999999999999999999988876 345667899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 007930 340 LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLY 419 (584)
Q Consensus 340 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (584)
++.|+++|+..+.+..+. + +....+...+.||..|....++++|+.|+.+-+.+..+. ++......+++.+|..+.
T Consensus 251 fe~A~ehYK~tl~LAiel--g-~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIEL--G-NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFN 326 (639)
T ss_pred cHhHHHHHHHHHHHHHHh--c-chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHH
Confidence 999999999999988774 2 345567888999999999999999999999999998887 666777888899999999
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRIN 467 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (584)
..|..++|+.+.+..+++..++++.... ..+..++...-...|..+
T Consensus 327 alg~h~kAl~fae~hl~~s~ev~D~sge--lTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRSSLEVNDTSGE--LTARDNLSDLILELGQED 372 (639)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCcchh--hhhhhhhHHHHHHhCCCc
Confidence 9999999999999999999888766533 234556666666666544
No 21
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=8.2e-25 Score=190.36 Aligned_cols=410 Identities=16% Similarity=0.127 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
..+++.++..|-...- +.+|+..|+-.++ ...-|+....-.++|.+|++..+|.+|+++|+.++...+...
T Consensus 201 fsvl~nlaqqy~~ndm-~~ealntyeiivk-------nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin- 271 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDM-TAEALNTYEIIVK-------NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN- 271 (840)
T ss_pred HHHHHHHHHHhhhhHH-HHHHhhhhhhhhc-------ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-
Confidence 3457777777766555 7777777766554 223344445556899999999999999999999998875432
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
....+.++.++|..+.+.|+|++|+..|+.+++. .|... +-++|..|++..|+-++..+.|++.+.+-
T Consensus 272 ---k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 272 ---KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred ---hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--------CccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence 2344567999999999999999999999999988 56554 44567788888899888888888887642
Q ss_pred HHhCCC------CCHH--------------------------------------------------------------HH
Q 007930 231 REHGHS------ASLE--------------------------------------------------------------EA 242 (584)
Q Consensus 231 ~~~~~~------~~~~--------------------------------------------------------------~a 242 (584)
....+. +.+. ..
T Consensus 340 ~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~ 419 (840)
T KOG2003|consen 340 GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI 419 (840)
T ss_pred CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh
Confidence 211100 0000 00
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-----------------HHHHHc--------------CCcchHHHHHHHHHHH
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLAS-----------------MVMIAN--------------GQENEVAAIDVSIGNI 291 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~-----------------~~~~~~--------------~~~~~~~~~~~~la~~ 291 (584)
..-.+.+..+.+.|+++.|++.+.-.- ..+... ..+...+.++.+.|.+
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 111223445667788888877664210 000000 0011122333444555
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 007930 292 YMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLT 371 (584)
Q Consensus 292 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 371 (584)
.+..|++++|.+.|++++.- +.....+++++|..+..+|+.++|+++|-+.-.+... .+.++.
T Consensus 500 ~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~~~ldeald~f~klh~il~n---------n~evl~ 562 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN---------NAEVLV 562 (840)
T ss_pred eeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---------hHHHHH
Confidence 55566666666666666653 4555666677777777777777777777666666533 356666
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHH
Q 007930 372 EISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGI 451 (584)
Q Consensus 372 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 451 (584)
.++.+|..+.+..+|++++.++..+.+.. ..++..+|.+|-+.|+-.+|..++-..... .|....
T Consensus 563 qianiye~led~aqaie~~~q~~slip~d-------p~ilskl~dlydqegdksqafq~~ydsyry--------fp~nie 627 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSLIPND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRY--------FPCNIE 627 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcccCCCC-------HHHHHHHHHHhhcccchhhhhhhhhhcccc--------cCcchH
Confidence 67777777777777777776666655544 345566677777777777776666555542 333456
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
+...||..|....-+++|+.+|+++.-+ .|........++.|+.+.|+|++|...|+..-.. .|
T Consensus 628 ~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fp 691 (840)
T KOG2003|consen 628 TIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FP 691 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------Cc
Confidence 6667777777777778888888887776 6777777777888888888888888888777665 67
Q ss_pred hHHHHHHHHHHHHHHhch
Q 007930 532 DIDDEKERLAELLKETGR 549 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~ 549 (584)
++.+++.-|.++.-.+|-
T Consensus 692 edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cchHHHHHHHHHhccccc
Confidence 777887777777777764
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=4.9e-22 Score=198.06 Aligned_cols=442 Identities=13% Similarity=-0.004 Sum_probs=328.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 007930 63 SSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSI 142 (584)
Q Consensus 63 ~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 142 (584)
.....|..+...+..+...++.|+ +..|++.++++++. +|....+...+..++...|+.++|+.++++++
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~---------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKA---------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhh---------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 445566677789999999999999 99999999999986 22322122267778888899999999999998
Q ss_pred HHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 007930 143 EVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENL 222 (584)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (584)
. +..... ..+..+|.++...|++++|++.|+++++. +|....++..++..+...++.++|+..
T Consensus 96 ~-------p~n~~~--~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~ 158 (822)
T PRK14574 96 S-------SMNISS--RGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQ 158 (822)
T ss_pred c-------CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 1 111111 23556688999999999999999999998 677788888999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHH
Q 007930 223 CKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAI 302 (584)
Q Consensus 223 ~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 302 (584)
++++....+... .+..++.++...++..+|++.+++++.. .|....++..+..++...|-...|.
T Consensus 159 l~~l~~~dp~~~---------~~l~layL~~~~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 159 ATELAERDPTVQ---------NYMTLSYLNRATDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHHhcccCcchH---------HHHHHHHHHHhcchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 999988765422 1344455555577777799999987764 3444444444444444444333333
Q ss_pred H-----------------------------------------HHHHHHHHHHHhhc---C---CcccHHHHHHHHHHHHH
Q 007930 303 F-----------------------------------------SYQKGLTVFKATRG---E---DHLSVASIFIRLADLYY 335 (584)
Q Consensus 303 ~-----------------------------------------~~~~al~~~~~~~~---~---~~~~~~~~~~~la~~~~ 335 (584)
+ ..++++........ . .++....+....-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 2 23333333333221 1 12233445555566677
Q ss_pred HcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007930 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415 (584)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 415 (584)
..|++.+++..|+....... ..|. .+...+|..|...+++++|+.+|++++.-.+..... +........|-
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~------~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~-~~~~~~~~~L~ 374 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGY------KMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRN-SDDLLDADDLY 374 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCC------CCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCC-CcchHHHHHHH
Confidence 88899999998887654421 2232 366778999999999999999999987654322111 11122234678
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHH----c---CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 416 VMLYVVGRYGEARSSFESAVVKLRA----S---GESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~a~~~~~~----~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..|...+++++|..++++..+...- . ....++........++.++...|++.+|++.+++.+.. .
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------a 446 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------A 446 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 8899999999999999998873220 0 12244567788889999999999999999999999988 8
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
|....++..+|.++...|++.+|...++.+..+ +|+...+...++.++..+|++.+|. .....++...|+.
T Consensus 447 P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~Pe~ 517 (822)
T PRK14574 447 PANQNLRIALASIYLARDLPRKAEQELKAVESL--------APRSLILERAQAETAMALQEWHQME-LLTDDVISRSPED 517 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhCCCc
Confidence 888899999999999999999999999988887 8999999999999999999999999 8888888888887
Q ss_pred hHHH
Q 007930 569 VKKE 572 (584)
Q Consensus 569 ~~~~ 572 (584)
....
T Consensus 518 ~~~~ 521 (822)
T PRK14574 518 IPSQ 521 (822)
T ss_pred hhHH
Confidence 6654
No 23
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=189.69 Aligned_cols=388 Identities=14% Similarity=0.127 Sum_probs=291.7
Q ss_pred CCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Q 007930 68 PDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDI 147 (584)
Q Consensus 68 ~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 147 (584)
|.....-..+|..+++..+ |.+|+.+|+-|++...++. .......+.++|..+.+.|+|++|+..|+..++..+.
T Consensus 234 ~nag~lkmnigni~~kkr~-fskaikfyrmaldqvpsin----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn 308 (840)
T KOG2003|consen 234 PNAGILKMNIGNIHFKKRE-FSKAIKFYRMALDQVPSIN----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN 308 (840)
T ss_pred CCCceeeeeecceeeehhh-HHHHHHHHHHHHhhccccc----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc
Confidence 3444445677888988888 9999999999999877654 3346788899999999999999999999999876522
Q ss_pred ccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh------CCCChHH----------------------
Q 007930 148 GKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL------GDSDPRV---------------------- 199 (584)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~---------------------- 199 (584)
+.+-+++..|++..|+-++..+.|++.+.+--..- ..++|..
T Consensus 309 ----------~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~ 378 (840)
T KOG2003|consen 309 ----------FIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKAD 378 (840)
T ss_pred ----------HHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhh
Confidence 13366788889999999998888888765411000 0001100
Q ss_pred ----------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC-----
Q 007930 200 ----------------------------------------AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG----- 234 (584)
Q Consensus 200 ----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----- 234 (584)
.+.-.+.+..+.+.|+++.|++.++-.-+...+..
T Consensus 379 aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~ 458 (840)
T KOG2003|consen 379 AEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAAN 458 (840)
T ss_pred HHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhh
Confidence 01112224457788999988887653322111100
Q ss_pred ----------CC--------------CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 007930 235 ----------HS--------------ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGN 290 (584)
Q Consensus 235 ----------~~--------------~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 290 (584)
+. .....+.++.+.|.+-+..|++++|.+.|.+++. ++.....+++++|.
T Consensus 459 nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfnigl 532 (840)
T KOG2003|consen 459 NLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGL 532 (840)
T ss_pred hhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcc
Confidence 00 0001123344455566668999999999998876 57788899999999
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGL 370 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 370 (584)
.+..+|+.++|+++|-+...+ -...+.++..++.+|..+.+..+|++++-++..+... ...++
T Consensus 533 t~e~~~~ldeald~f~klh~i--------l~nn~evl~qianiye~led~aqaie~~~q~~slip~---------dp~il 595 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAI--------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN---------DPAIL 595 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC---------CHHHH
Confidence 999999999999999998777 3567889999999999999999999999999887533 35788
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH
Q 007930 371 TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450 (584)
Q Consensus 371 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 450 (584)
..||.+|-..|+-.+|..++-.....++.. ..+...+|..|....-+++|+.+|+++--+ .|...
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~n-------ie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~ 660 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCN-------IETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQS 660 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcc-------hHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHH
Confidence 899999999999999999988877776655 456678999999999999999999998764 34455
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
.....++.|+.+.|+|++|.+.|+..... .|...+++..|.++.-.+|-. +|.++-.+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 66777899999999999999999998877 788888888888888777753 34444433
No 24
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-24 Score=186.31 Aligned_cols=332 Identities=15% Similarity=0.141 Sum_probs=279.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 007930 163 QLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEA 242 (584)
Q Consensus 163 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 242 (584)
.-|.-+++.|++...+.+|+.+++.... +-.....+|..||.+|+..++|++|+++...-+.+.+..+ +....+
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTe----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGEA 95 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTE----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGEA 95 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcch----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhccc
Confidence 3467788999999999999999998322 1234566889999999999999999999888888777776 456667
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC--------------------hhHHH
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR--------------------FDEAI 302 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~ 302 (584)
.+.-++|.++...|.|++|+.+..+-+.+.++.++......+++++|.+|...|+ ++.|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999998775 34566
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007930 303 FSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNE 382 (584)
Q Consensus 303 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 382 (584)
++|..-+++.+... +......++-+||..|+.+|+|+.|+.+-+.-+.+.++. | +....-.++.++|.++.-.|+
T Consensus 176 ~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef--G-DrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 176 KFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF--G-DRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh--h-hHHHHHHhhcccchhhhhhcc
Confidence 66666666666654 345567889999999999999999999999999998873 3 344556789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh
Q 007930 383 HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ 462 (584)
Q Consensus 383 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (584)
++.|+++|+..+.+..+. ++....+...+.+|..|.-..++++|+.|+++-+.+.+++++.... ..+++.||..+..
T Consensus 251 fe~A~ehYK~tl~LAiel-g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe--~RacwSLgna~~a 327 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIEL-GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE--LRACWSLGNAFNA 327 (639)
T ss_pred cHhHHHHHHHHHHHHHHh-cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHh
Confidence 999999999999998887 7777778888999999999999999999999999999988765543 6789999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 463 LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 463 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
.|..++|+.+.++.+++..++.++ .....+..+|...-...|..+.
T Consensus 328 lg~h~kAl~fae~hl~~s~ev~D~--sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSSLEVNDT--SGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCc--chhhhhhhhhHHHHHHhCCCcc
Confidence 999999999999999998887653 2344566777777777776543
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=4.2e-23 Score=197.03 Aligned_cols=318 Identities=15% Similarity=0.114 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
....+.+|..+...|++++|+..|+++++..+.. ..++..+|.++...|++++|+..+++++.. ......
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~ 104 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET--------VELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTRE 104 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc--------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHH
Confidence 3455667888999999999999999999875432 346889999999999999999999987652 001112
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
....++..+|.+|...|++++|+..|+++++. .+....++..++.++...|++++|++.+++++.....
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--- 173 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--- 173 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---
Confidence 23467899999999999999999999999875 5667788999999999999999999999998876422
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
.........+..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+..+++++..
T Consensus 174 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 243 (389)
T PRK11788 174 -SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQ-- 243 (389)
T ss_pred -cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 1222345567889999999999999999999999876543 456778999999999999999999999875
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.+.....++..++.++...|++++|+..++++++. +|+.. .+..++.++...|++++|...+++++
T Consensus 244 -----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 244 -----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred -----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22233567888999999999999999999999987 55553 44889999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHH--hchHHHHHH---HHHHHHHhhhhhhhH
Q 007930 520 KVREEKLGTANPDIDDEKERLAELLKE--TGRARNRKG---KSLENLLDSNAYRVK 570 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~---~~l~~~~~~~~~~~~ 570 (584)
+. +|+.......++..+.. .|+..++.. ..++..+..+|+...
T Consensus 310 ~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 310 RR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred Hh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence 97 78776554444433322 457777762 344444556665443
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3e-24 Score=196.37 Aligned_cols=310 Identities=17% Similarity=0.109 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 198 RVAETCRYLAEAHIQAM--QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
.....+..+|..|.... +..+|+..|++.-.. .....+++..+|..|+.+++|++|..+|+.+-+.
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h--------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~---- 382 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKLPSH--------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI---- 382 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 34556667777665443 556788887772221 1223467899999999999999999999987553
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
.|....-.-....+++.+.+--+---+.+..++. ++..+.+|..+|.+|..+++++.|+++|++++.+.+
T Consensus 383 --~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~--------~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp 452 (638)
T KOG1126|consen 383 --EPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT--------DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP 452 (638)
T ss_pred --ccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh--------CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC
Confidence 2322222233344444444332222222333333 688899999999999999999999999999999863
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
..+.+|..+|.=+.....+|.|..+|+.|+.+.++. ..+|+.+|.+|.++++++.|+-.|++|+
T Consensus 453 ---------~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 453 ---------RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-------YNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred ---------ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-------hHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 357889999999999999999999999999988777 6789999999999999999999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 007930 436 VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEIL 515 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 515 (584)
++ .|........+|.++.+.|+.++|+.+|++|+.+ +|...-..+..|.++..++++++|+..+
T Consensus 517 ~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 517 EI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred cC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 96 5556788999999999999999999999999999 8888889999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 516 EYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 516 ~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
++..++ .|+...+++.+|.+|.+.|+.+.|+ ..+..+.+.+|....
T Consensus 581 EeLk~~--------vP~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 581 EELKEL--------VPQESSVFALLGKIYKRLGNTDLAL-LHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHh--------CcchHHHHHHHHHHHHHHccchHHH-HhhHHHhcCCCccch
Confidence 999998 8999999999999999999999999 888899988887655
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.5e-22 Score=172.08 Aligned_cols=343 Identities=14% Similarity=0.083 Sum_probs=260.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-----------------------------HHHH
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYL-----------------------------AEAH 210 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-----------------------------a~~~ 210 (584)
.++..|.++...|....|+..+..++.. .|....+|..| +.++
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~--------~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNR--------YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhc--------CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 4788999999999999999999988764 24444444433 3444
Q ss_pred HHhCCHHHHHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 007930 211 IQAMQFDEAENLCKKILEI-HREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289 (584)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 289 (584)
....+.++++.-++..... ++. ...+-...|.+...+.++++|+..|+...+ ++|....-.....
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~--------~~~i~~~~A~~~y~~rDfD~a~s~Feei~k------nDPYRl~dmdlyS 303 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPN--------SMYIKTQIAAASYNQRDFDQAESVFEEIRK------NDPYRLDDMDLYS 303 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCc--------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHh------cCCCcchhHHHHh
Confidence 4444455555444444333 111 112345567777778888888888876544 2333333333344
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
++++-..+-.+---..+.+..+ +...+.+...+|+.|...++.++|+.+|++++++.+ ....+
T Consensus 304 N~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp---------~~~~a 366 (559)
T KOG1155|consen 304 NVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP---------KYLSA 366 (559)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc---------chhHH
Confidence 4444444433322233333333 455566677789999999999999999999999964 45789
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchH
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFF 449 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 449 (584)
|..+|.-|..+++...|++.|+.|+++.|.. ..+|+.+|..|.-++-..=|+-+|++|... .|..
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnD 431 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPND 431 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCc
Confidence 9999999999999999999999999998877 678899999999999999999999999985 4556
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
...|..||.+|.+.++.++|+++|.+++.. ......++..||.+|.++++.++|..+|++.++.. ..-|..
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~ 502 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEI 502 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-Hhhccc
Confidence 789999999999999999999999999997 33455799999999999999999999999999976 556666
Q ss_pred ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 530 NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
.|++..+..-|+.-+.+.+++++|. .+...++.-++
T Consensus 503 ~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 503 DDETIKARLFLAEYFKKMKDFDEAS-YYATLVLKGET 538 (559)
T ss_pred chHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhcCCc
Confidence 8889999999999999999999998 66666665433
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=4.5e-23 Score=209.81 Aligned_cols=386 Identities=13% Similarity=0.030 Sum_probs=300.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHH
Q 007930 80 ETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFS 159 (584)
Q Consensus 80 ~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (584)
.....+. +.++...+..-.+. .|.....+..++......|++++|..+|+++....... .- +. .
T Consensus 351 ~~~~~~~-~~~~~~~~~~~y~~---------~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~-~~---~ 414 (987)
T PRK09782 351 VSVATRN-KAEALRLARLLYQQ---------EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA--RL-SQ---T 414 (987)
T ss_pred hccccCc-hhHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc--cc-CH---H
Confidence 3444466 67777766664431 24456677789999999999999999999998752111 01 11 1
Q ss_pred HHHHHHHHHHhcCC---hHHH----------------------HHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHH
Q 007930 160 GYMQLGDTCSSMGL---LDRS----------------------VWCYESGLEIQIEALGDSDPR--VAETCRYLAEAHIQ 212 (584)
Q Consensus 160 ~~~~l~~~~~~~g~---~~~A----------------------~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~ 212 (584)
....++.+|...+. ..++ ...+..+... .+ ..|. ...++..+|.++..
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----l~-~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL----LG-DMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh----cc-cCCCCCCHHHHHHHHHHHHh
Confidence 23366666666654 2333 2222222222 22 2355 78899999999987
Q ss_pred hCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 007930 213 AMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIY 292 (584)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 292 (584)
+++.+|+..+.+++...|.. .....+|.++...|++++|+..++++... .+. ...+..+|.++
T Consensus 490 -~~~~eAi~a~~~Al~~~Pd~---------~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~la~al 552 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQPDA---------WQHRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLAAANTA 552 (987)
T ss_pred -CCcHHHHHHHHHHHHhCCch---------HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHHHHHHH
Confidence 89999999999998876531 12556777778999999999999986431 122 23467889999
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 007930 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE 372 (584)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 372 (584)
...|++++|+.+++++++. .|.....+..++......|++++|+..+++++++. |. ...+.+
T Consensus 553 l~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---------P~-~~a~~~ 614 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---------PS-ANAYVA 614 (987)
T ss_pred HHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---------CC-HHHHHH
Confidence 9999999999999999886 45556666667777777899999999999999874 22 568899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 007930 373 ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452 (584)
Q Consensus 373 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (584)
+|.++...|++++|+..|++++.+.|+. ..++.++|.++...|++++|+..|+++++. .|....+
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a 679 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNN-------SNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPAL 679 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 9999999999999999999999997776 678889999999999999999999999995 4456789
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
+.++|.++...|++++|+.+|++++++ .|+.+.+....|.+.....+++.|.+.+.++..+ .|.
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--------~~~ 743 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF--------SFD 743 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--------Ccc
Confidence 999999999999999999999999999 8899999999999999999999999999999887 666
Q ss_pred HHHHHHHHHHHHHHhchHHHH
Q 007930 533 IDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A 553 (584)
.. +....|.++...+++-.+
T Consensus 744 ~~-a~~~~g~~~~~~~~~~~~ 763 (987)
T PRK09782 744 SS-IGLRSGAMSTANNNVGGA 763 (987)
T ss_pred ch-hccccchHhhhcccccCC
Confidence 65 777788888877776443
No 29
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8e-22 Score=176.06 Aligned_cols=406 Identities=22% Similarity=0.227 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCc
Q 007930 73 FLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSD 152 (584)
Q Consensus 73 ~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 152 (584)
-+...|...+..|+ |+.|+.+|.+|+.+ +|.....+.+...+|..+|+|++|++--.+.+++. ++
T Consensus 4 e~k~kgnaa~s~~d-~~~ai~~~t~ai~l---------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-----p~ 68 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGD-FETAIRLFTEAIML---------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-----PD 68 (539)
T ss_pred HHHHHHHhhccccc-HHHHHHHHHHHHcc---------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-----Cc
Confidence 45677889999999 99999999999987 33356677789999999999999999999988876 33
Q ss_pred hhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCC-----------------
Q 007930 153 RALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQ----------------- 215 (584)
Q Consensus 153 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 215 (584)
.+ ..|..+|..+.-+|+|++|+..|.+.|+. +|.....+..|+.++.....
T Consensus 69 w~----kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 69 WA----KGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL 136 (539)
T ss_pred hh----hHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence 33 45999999999999999999999999998 78888888888887722210
Q ss_pred ----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-------HHHHH-HcC-------
Q 007930 216 ----FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA-------SMVMI-ANG------- 276 (584)
Q Consensus 216 ----~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a-------~~~~~-~~~------- 276 (584)
+-.....|...++..+..+.. ...+.+ -.....+.-.+... ..... ...
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~p~~-----l~~~l~-------d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~ 204 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKNPTS-----LKLYLN-------DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQE 204 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcCcHh-----hhcccc-------cHHHHHHHHHHhcCccccccccccccCCCCCCccccc
Confidence 001112222222222222110 000000 00011111111000 00000 000
Q ss_pred --------C------cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHH
Q 007930 277 --------Q------ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRE 342 (584)
Q Consensus 277 --------~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 342 (584)
+ ....+.-.-.+|...+...++..|++.|..++++ . .....+.+.+.+|+..|.+.+
T Consensus 205 ~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~~~~~ 275 (539)
T KOG0548|consen 205 HNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERGKYAE 275 (539)
T ss_pred CCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhccHHHH
Confidence 0 0012445678999999999999999999999998 4 566778889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 007930 343 SKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG 422 (584)
Q Consensus 343 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 422 (584)
.+....++++..... ..+...++.++..+|..|...++++.|+.+|++++..... ..+.....
T Consensus 276 c~~~c~~a~E~gre~--rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk 338 (539)
T KOG0548|consen 276 CIELCEKAVEVGREL--RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLK 338 (539)
T ss_pred hhcchHHHHHHhHHH--HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHH
Confidence 999999988765432 1122335666777888999999999999999998765443 22233333
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 502 (584)
..++++...+...-+ .+..+.-...-|..++..|+|..|+.+|.+++.. +|+.+..|.+.|.||
T Consensus 339 ~~Ek~~k~~e~~a~~--------~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 339 EAEKALKEAERKAYI--------NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACY 402 (539)
T ss_pred HHHHHHHHHHHHHhh--------ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHH
Confidence 334443333332221 1222333444466666666666666666666665 566666666666666
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 503 DALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 503 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
.++|.+..|+...+.++++ +|....++.+-|.++..+.+|++|. ..++..++.+|+.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~~ 459 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPSN 459 (539)
T ss_pred HHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchh
Confidence 6666666666666666665 5666666666666666666666666 5555555555443
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4e-22 Score=190.30 Aligned_cols=309 Identities=13% Similarity=0.066 Sum_probs=248.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL 239 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (584)
..+..|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++... .....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTRE 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHH
Confidence 3666788999999999999999999988 67788899999999999999999999999887631 11122
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
....++..+|.+|...|++++|+..|++++.. .+....++..++.++...|++++|+..++++++.... ..
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 175 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SL 175 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cc
Confidence 33457899999999999999999999988653 4556678899999999999999999999998775211 00
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.......+..+|.++...|++++|+.+++++++.... ...++..+|.++...|++++|++++++++...+.
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ---------CVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 1123456778999999999999999999999987422 3567889999999999999999999999876433
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ...++..++.+|...|++++|+..+++++... +.. ..+..++.++...|++++|+..++++++.
T Consensus 247 ~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 247 Y------LSEVLPKLMECYQALGDEAEGLEFLRRALEEY--------PGA-DLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred h------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2 23556788999999999999999999998851 222 23478999999999999999999999998
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDA--LGRVEDAIEILEYILKV 521 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~ 521 (584)
.|+.......++..+.. .|+..+|+..+++.++.
T Consensus 312 --------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 312 --------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred --------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 77776544444433322 56899999999988863
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-21 Score=170.42 Aligned_cols=353 Identities=17% Similarity=0.160 Sum_probs=264.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC-----------Cch--------h-hhHHHHHHHHHHHHHhcCCh
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG-----------SDR--------A-LAKFSGYMQLGDTCSSMGLL 174 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~--------~-~~~~~~~~~l~~~~~~~g~~ 174 (584)
...++..|.++...|....|+..|..++...+-..+ ... + ...+..-..++.++....+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~ 243 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQH 243 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHH
Confidence 445667777787888888887777776653211000 000 0 01112234556667766677
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007930 175 DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA 254 (584)
Q Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~ 254 (584)
++++.-++..... .-|.....-...|.+...+.++++|+..|+...+..|- ...... ....++.-
T Consensus 244 ~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY-----Rl~dmd---lySN~LYv 308 (559)
T KOG1155|consen 244 EEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY-----RLDDMD---LYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-----cchhHH---HHhHHHHH
Confidence 7777666555544 13555566677889999999999999999998876432 222222 23333333
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q 007930 255 KADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334 (584)
Q Consensus 255 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 334 (584)
..+-. .+.++-+ .... .+.....+...+|+.|...++.++|+.+|++|+++ +|....+|..+|.-|
T Consensus 309 ~~~~s-kLs~LA~--~v~~---idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 309 KNDKS-KLSYLAQ--NVSN---IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEY 374 (559)
T ss_pred HhhhH-HHHHHHH--HHHH---hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHH
Confidence 33222 1222211 1111 13334455677899999999999999999999999 899999999999999
Q ss_pred HHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007930 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQM 414 (584)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 414 (584)
..+.+...|++.|+.|+++.+. .-.+|+.||+.|..++-+.=|+-+|++|....|.. ..++..|
T Consensus 375 vEmKNt~AAi~sYRrAvdi~p~---------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-------sRlw~aL 438 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDINPR---------DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND-------SRLWVAL 438 (559)
T ss_pred HHhcccHHHHHHHHHHHhcCch---------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-------hHHHHHH
Confidence 9999999999999999999743 46899999999999999999999999999987665 6788899
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 494 (584)
|.+|.+.++.++|+++|.+++.. ......++..+|.+|...++.++|..+|++.++.. ...+...+....+
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKA 509 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHH
Confidence 99999999999999999999984 23346899999999999999999999999999976 3445556778888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
...|+.-+.+.+++++|..+..+++.-
T Consensus 510 ~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 899999999999999999998888774
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.7e-22 Score=176.22 Aligned_cols=408 Identities=16% Similarity=0.151 Sum_probs=293.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH------H
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV------V 145 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~ 145 (584)
.-.+-+|++++..|+ ++.|......-. + ......+.+..+.++....++++|...+.++-.. .
T Consensus 50 ~d~~~~aq~l~~~~~-y~ra~~lit~~~-l---------e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy 118 (611)
T KOG1173|consen 50 ADIYWLAQVLYLGRQ-YERAAHLITTYK-L---------EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYY 118 (611)
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHhh-h---------hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhc
Confidence 334667888888888 887776655442 1 1223567778899999999999999988843111 0
Q ss_pred Hhc---------cCCc-hhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh----------------------C
Q 007930 146 DIG---------KGSD-RALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL----------------------G 193 (584)
Q Consensus 146 ~~~---------~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------~ 193 (584)
++. .+.. ........++..|.+|....++++|...|.+|+..-...+ +
T Consensus 119 ~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~ 198 (611)
T KOG1173|consen 119 EKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLES 198 (611)
T ss_pred chhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhc
Confidence 000 0000 0111224567778899999999999999988865410000 0
Q ss_pred -------CCC--------------------------------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 194 -------DSD--------------------------------PRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 194 -------~~~--------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
..+ ....+.+...+..++..++|.+..+..+..++..|-+.
T Consensus 199 l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~ 278 (611)
T KOG1173|consen 199 LDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHL 278 (611)
T ss_pred ccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCc
Confidence 000 00112223334444455555555555555555443332
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 007930 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKA 314 (584)
Q Consensus 235 ~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 314 (584)
.- .-..+| ++...|+..+-...-.+.+ ...|..+..|+.+|..|...|++.+|.++|.++..+
T Consensus 279 ~~-------~~~~ia-~l~el~~~n~Lf~lsh~LV------~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--- 341 (611)
T KOG1173|consen 279 PC-------LPLHIA-CLYELGKSNKLFLLSHKLV------DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--- 341 (611)
T ss_pred ch-------HHHHHH-HHHHhcccchHHHHHHHHH------HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc---
Confidence 11 122233 3334443332222222111 146677778899999999999999999999999998
Q ss_pred hhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 315 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
++..+.+|...|..+...|+.++|+..|..|-++.+. ..- -...+|.-|...++++-|.++|.+|+
T Consensus 342 -----D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G----~hl-----P~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 342 -----DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG----CHL-----PSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred -----CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC----Ccc-----hHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999754 222 34468888999999999999999999
Q ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 395 KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
.+.|.. ..++..+|.+.+..+.|.+|..+|+.++...+....... .+...+.+||.++.+++++++|+.+|+
T Consensus 408 ai~P~D-------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 408 AIAPSD-------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred hcCCCc-------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 998877 467788999999999999999999999987777766554 466789999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
+++.+ .|..+.++..+|.+|..+|+++.|+++|.+++.+ .|++..+-..|+.+..
T Consensus 480 ~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--------~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 480 KALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--------KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--------CCccHHHHHHHHHHHH
Confidence 99999 8889999999999999999999999999999998 7777666655654443
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2e-23 Score=190.98 Aligned_cols=301 Identities=17% Similarity=0.151 Sum_probs=247.7
Q ss_pred HHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC
Q 007930 159 SGYMQLGDTCSSM--GLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236 (584)
Q Consensus 159 ~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (584)
..+..+|..|... -+..+|+..|++.-.. +++...++..+|..|+.+++|++|..+|+.+-+..|-..+.
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h--------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~ 389 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSH--------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG 389 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 4566666666544 4557777777773222 56777999999999999999999999999998876644322
Q ss_pred CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhh
Q 007930 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 237 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 316 (584)
.-....+++.+.+ +-++.++-+- + ...++.....|..+|.+|..+++++.|+++|++|+++
T Consensus 390 --------meiyST~LWHLq~-~v~Ls~Laq~--L---i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----- 450 (638)
T KOG1126|consen 390 --------MEIYSTTLWHLQD-EVALSYLAQD--L---IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----- 450 (638)
T ss_pred --------hhHHHHHHHHHHh-hHHHHHHHHH--H---HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----
Confidence 2222333333322 1222333221 1 1246677889999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 317 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
+|..+.+|..+|.=+....++|.|..+|++++.+..+ ...+|+.+|.+|.++++++.|.-+|++|+++
T Consensus 451 ---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r---------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I 518 (638)
T KOG1126|consen 451 ---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR---------HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI 518 (638)
T ss_pred ---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch---------hhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence 7999999999999999999999999999999988633 4689999999999999999999999999999
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
.|.. ..+...+|.++.+.|+.++|+.+|++|+.+ .+......+..|.++...+++++|+..+++.
T Consensus 519 NP~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 519 NPSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred Cccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 8776 556778999999999999999999999985 3344577889999999999999999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++ -|+...+++.+|.+|.++|+.+.|+..|.-|.++
T Consensus 584 k~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 584 KEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 998 8999999999999999999999999999999988
No 34
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.92 E-value=1.9e-21 Score=198.01 Aligned_cols=264 Identities=14% Similarity=0.071 Sum_probs=153.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 324 (584)
|+.+...|...|++++|++.|++... .+-.++. .++..+...+...|++++|.+.+..+++. ..+...
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~----~g~~pd~-~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~~d~ 360 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRD----SGVSIDQ-FTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFPLDI 360 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCCCCe
Confidence 44555555555555555555543321 1222221 23444555555555555555555544433 122333
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCc
Q 007930 325 SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH 404 (584)
Q Consensus 325 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 404 (584)
.++..+...|.+.|++++|...|++..+. ...+|+.+...|...|+.++|++.|++..+. +..
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~~------------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~ 423 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPRK------------NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVA 423 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCCC------------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC
Confidence 44555566666666666666665543210 1345666666677777777777777665532 211
Q ss_pred ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh
Q 007930 405 STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
+. ..++..+...+.+.|+.++|.++|+...+.. +. .| ....|..+..++.+.|++++|.+.+++.
T Consensus 424 Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~---g~--~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~-------- 488 (697)
T PLN03081 424 PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH---RI--KP-RAMHYACMIELLGREGLLDEAYAMIRRA-------- 488 (697)
T ss_pred CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CC--CC-CccchHhHHHHHHhcCCHHHHHHHHHHC--------
Confidence 21 2345556666667777777777776655421 11 11 1245666777777777777777766542
Q ss_pred CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 485 GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 485 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
+..|+ ..+|..|...+...|+.+.|...+++.+++ .|+....+..|..+|...|++++|. +.++.+.+
T Consensus 489 -~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~-~v~~~m~~ 556 (697)
T PLN03081 489 -PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAA-KVVETLKR 556 (697)
T ss_pred -CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHH-HHHHHHHH
Confidence 11343 346777777788888888888877777665 6776778889999999999999998 66665553
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.2e-21 Score=172.91 Aligned_cols=445 Identities=15% Similarity=0.124 Sum_probs=307.3
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
..-...+-+....+.+ |.-|+-+.++...+ . .+|.. .+.+|.+++-.|+|..|......-. +
T Consensus 16 ~~~~~~~~r~~l~q~~-y~~a~f~adkV~~l------~-~dp~d---~~~~aq~l~~~~~y~ra~~lit~~~-l------ 77 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHR-YKTALFWADKVAGL------T-NDPAD---IYWLAQVLYLGRQYERAAHLITTYK-L------ 77 (611)
T ss_pred HHHHHHHHHHHHHHHh-hhHHHHHHHHHHhc------c-CChHH---HHHHHHHHHhhhHHHHHHHHHHHhh-h------
Confidence 3344445556666777 88888888887765 2 33333 3478999999999999888776541 1
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH------HHH----h-----CCC--ChHHHHHHHHHHHHHHHh
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ------IEA----L-----GDS--DPRVAETCRYLAEAHIQA 213 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~----~-----~~~--~~~~~~~~~~la~~~~~~ 213 (584)
....+.+.+..+.++....++++|...+..+-... .+. . +++ .......++..|.+|...
T Consensus 78 ---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al 154 (611)
T KOG1173|consen 78 ---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVAL 154 (611)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhh
Confidence 11122457788999999999999998887441110 000 0 000 011234566678889999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHHH---------HhccHHHHHHHHHHHHHHHH-------HcC
Q 007930 214 MQFDEAENLCKKILEIHREHGHSASLEEAADRRLMA-LVYE---------AKADYESALEHLVLASMVMI-------ANG 276 (584)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~-~~~~---------~~g~~~~A~~~~~~a~~~~~-------~~~ 276 (584)
.++++|...|.+++-........-.... ......+ .... ..+...+-++.+-+....-. ..+
T Consensus 155 ~n~~~ar~~Y~~Al~~D~~c~Ea~~~lv-s~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 155 DNREEARDKYKEALLADAKCFEAFEKLV-SAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred ccHHHHHHHHHHHHhcchhhHHHHHHHH-HHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 9999999999999866544332100000 0000000 0000 01111111111111100000 000
Q ss_pred -----CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH--------------Hh------------hcCCcccHHH
Q 007930 277 -----QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK--------------AT------------RGEDHLSVAS 325 (584)
Q Consensus 277 -----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------~~------------~~~~~~~~~~ 325 (584)
.......+....+..++..++|.+..+..+..++... +. .-...|..+.
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~ 313 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKAL 313 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCc
Confidence 0112344555566666666666666666665554300 00 0113688888
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
.|+..|..|...|++.+|..+|.++..+.. ..+.+|...|..+...|..++|+..|..|-++.+...-
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~---------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl--- 381 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDP---------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL--- 381 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCc---------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc---
Confidence 999999999999999999999999988853 35789999999999999999999999999998876522
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
-...+|.-|...++++-|..+|.+|+.+. |..+.++..+|.+.+..+.|.+|..+|+.++...+....
T Consensus 382 ----P~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 382 ----PSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred ----hHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 22368899999999999999999999973 345678999999999999999999999999977666544
Q ss_pred CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
.. +.....+.+||.++.+++.+++|+.+|++++.+ .|..+.++..+|.+|..+|+++.|+ ..+.++|...
T Consensus 450 e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~l~ 519 (611)
T KOG1173|consen 450 EK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAI-DHFHKALALK 519 (611)
T ss_pred cc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHH-HHHHHHHhcC
Confidence 33 345678999999999999999999999999998 8999999999999999999999999 8888888887
Q ss_pred hhhhHH
Q 007930 566 AYRVKK 571 (584)
Q Consensus 566 ~~~~~~ 571 (584)
|+.+..
T Consensus 520 p~n~~~ 525 (611)
T KOG1173|consen 520 PDNIFI 525 (611)
T ss_pred CccHHH
Confidence 776443
No 36
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.91 E-value=5e-19 Score=181.84 Aligned_cols=417 Identities=11% Similarity=0.026 Sum_probs=262.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
++.....+...-..+.+.|+ +++|+..+++.... ..-+.....+..+...+...|..++|..+++....
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~-l~eAl~Lfd~M~~~-------gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--- 434 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGR-IKDCIDLLEDMEKR-------GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--- 434 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcC-HHHHHHHHHHHHhC-------CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---
Confidence 33334445555556668898 89888888776542 11111233334455566677788888777665321
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
+.. .+|..+-..+...|++++|...++++.+.. ......++..+...|.+.|++++|.++|+++
T Consensus 435 -------pd~--~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 435 -------PTL--STFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred -------CCH--HHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 111 346667777778888888888777765541 1123456677777778888888888887776
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (584)
.+... .+ ...+|..+...|.+.|++++|++.|.+... .+..|+ ..+|..+...|.+.|++++|.+.+.
T Consensus 499 ~~~Gv---~P----dvvTynaLI~gy~k~G~~eeAl~lf~~M~~----~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 499 VNAGV---EA----NVHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPD-RVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred HHcCC---CC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 54211 11 124577777778888888888877765432 233333 3466777777788888888888777
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHH
Q 007930 307 KGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEA 386 (584)
Q Consensus 307 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 386 (584)
+....... -.| ...++..+...|.+.|++++|.+.|++..+..-. ....+|+.+...|.+.|++++|
T Consensus 567 eM~~~~~g----i~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~--------p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 567 EMKAETHP----IDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIK--------GTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HHHHhcCC----CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--------CChHHHHHHHHHHHhcCCHHHH
Confidence 76542100 012 2456677777788888888888888776654211 1235677777778888888888
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH
Q 007930 387 LKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (584)
...|++..+. +..+. ..++..+...|.+.|++++|.++++++.+. +. .....++..+...|.+.|++
T Consensus 634 l~lf~eM~~~-----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~---~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 634 LSIYDDMKKK-----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GI---KLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC---CCCHHHHHHHHHHHHhCCCH
Confidence 8877776543 22222 345667777778888888888877776642 11 11245677777788888888
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
++|.++|++.... + ..|+ ..+|..+...|.+.|++++|.++|++.... | -.|+ ..++..+...+.+
T Consensus 701 eeA~~lf~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~-----G-i~Pd-~~Ty~sLL~a~~k 766 (1060)
T PLN03218 701 KKALELYEDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL-----G-LCPN-TITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHH
Confidence 8888877776543 1 1343 356777777888888888888887776543 1 1233 3556666677777
Q ss_pred hchHHHHHHHHHHHHHh
Q 007930 547 TGRARNRKGKSLENLLD 563 (584)
Q Consensus 547 ~g~~~~A~~~~l~~~~~ 563 (584)
.|+.++|. ..+..+++
T Consensus 767 ~G~le~A~-~l~~~M~k 782 (1060)
T PLN03218 767 KDDADVGL-DLLSQAKE 782 (1060)
T ss_pred CCCHHHHH-HHHHHHHH
Confidence 88888777 55555543
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=3.9e-21 Score=181.86 Aligned_cols=353 Identities=16% Similarity=0.115 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC
Q 007930 158 FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA 237 (584)
Q Consensus 158 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 237 (584)
+..++..|...+..|++++|...+.+++.. +|....+|..||.+|..+|+.+++....-.|-.+.|+..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--- 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--- 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh---
Confidence 456888899999999999999999999998 899999999999999999999999998887776665544
Q ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc
Q 007930 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG 317 (584)
Q Consensus 238 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 317 (584)
..|..++.....+|++++|.-+|.+|++. .|.........+.+|.+.|+...|...|.+.+......
T Consensus 208 -----e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-- 274 (895)
T KOG2076|consen 208 -----ELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-- 274 (895)
T ss_pred -----HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch--
Confidence 34999999999999999999999999985 66667888999999999999999999999999882100
Q ss_pred CCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--
Q 007930 318 EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK-- 395 (584)
Q Consensus 318 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-- 395 (584)
+...........+..+...++-+.|++.++.++...... .....++.++.++.....++.|.........
T Consensus 275 -d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~-------~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 275 -DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE-------ASLEDLNILAELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred -hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-------ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence 011223334455778888888899999999999843221 1234556788999999999999887766554
Q ss_pred --------------------HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 007930 396 --------------------LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQ 455 (584)
Q Consensus 396 --------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 455 (584)
+.+-..+....+..+...++.+..+.++..+++..+..--.. ........+..
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-------~~~d~~dL~~d 419 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-------WVSDDVDLYLD 419 (895)
T ss_pred cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-------ChhhhHHHHHH
Confidence 111111112222224556666666777776666555432221 23345688999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 007930 456 MGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDD 535 (584)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~ 535 (584)
++.++...|++.+|+.+|..+... + ......+|+.+|.||..+|.+++|+++|++++.+ .|++.+
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~------~-~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D 484 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNR------E-GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLD 484 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcC------c-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchh
Confidence 999999999999999999988774 1 2234679999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 536 EKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
+...|+.++.++|+.++|. ..++.+...+
T Consensus 485 ~Ri~Lasl~~~~g~~Ekal-EtL~~~~~~D 513 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKAL-ETLEQIINPD 513 (895)
T ss_pred hhhhHHHHHHhcCCHHHHH-HHHhcccCCC
Confidence 9999999999999999999 6777666444
No 38
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=2.3e-20 Score=156.88 Aligned_cols=381 Identities=15% Similarity=0.094 Sum_probs=256.5
Q ss_pred chhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 007930 110 QELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI 189 (584)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 189 (584)
.++..+.-+..+|..++..|++.+|+..|..|++..+. .. .+++..|.+|..+|+-.-|+.-+.+++++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-----~Y----~aifrRaT~yLAmGksk~al~Dl~rVlel-- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-----NY----QAIFRRATVYLAMGKSKAALQDLSRVLEL-- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-----hH----HHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence 34556777889999999999999999999999976422 22 45889999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 190 EALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLAS 269 (584)
Q Consensus 190 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~ 269 (584)
.|+...+....|.++.++|++++|+.-|..+++..+..... . .+...++.+
T Consensus 102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~---~--eaqskl~~~------------------ 152 (504)
T KOG0624|consen 102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV---L--EAQSKLALI------------------ 152 (504)
T ss_pred ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh---H--HHHHHHHhH------------------
Confidence 79999999999999999999999999999999876644321 0 001111100
Q ss_pred HHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 007930 270 MVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349 (584)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 349 (584)
.....+......++..|+...|+.+....+++ .|..+..+...+.+|...|+...|+.-++.
T Consensus 153 ----------~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ 214 (504)
T KOG0624|consen 153 ----------QEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQ 214 (504)
T ss_pred ----------HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 01112223333445556666666666666665 455666666666666666666666666666
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHH---------HHHHHHHH
Q 007930 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEA---------QMGVMLYV 420 (584)
Q Consensus 350 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~---------~l~~~~~~ 420 (584)
+-++... ....++.++.+++..|+.+.++...++++++.++...- ...|. .-+.-...
T Consensus 215 askLs~D---------nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C----f~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 215 ASKLSQD---------NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC----FPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred HHhcccc---------chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 6555322 13455566666666666666666666666655443110 00111 11223344
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 500 (584)
.++|.++++..++.++.- +...+........+..|+...|++.+|+....+++.+ .|+.+.++...+.
T Consensus 282 ~~~~t~cle~ge~vlk~e----p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNE----PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAE 349 (504)
T ss_pred hhhHHHHHHHHHHHHhcC----CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHH
Confidence 566667777776666531 1112223345566778888889999999999999998 8888999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHHHhHhhcC
Q 007930 501 TYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVTKRRSGF 580 (584)
Q Consensus 501 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~~~~~~~ 580 (584)
+|..-..|+.|+..|++|.++ ++++..+...+-.+-....+.. + ..+-+++....+....++.++|+++
T Consensus 350 A~l~dE~YD~AI~dye~A~e~--------n~sn~~~reGle~Akrlkkqs~--k-RDYYKILGVkRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALEL--------NESNTRAREGLERAKRLKKQSG--K-RDYYKILGVKRNASKQEITKAYRKL 418 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHHHHhc--c-chHHHHhhhcccccHHHHHHHHHHH
Confidence 999999999999999999997 6666666655544332221111 1 3444666666667777788888877
Q ss_pred CCCC
Q 007930 581 GFRT 584 (584)
Q Consensus 581 ~~~~ 584 (584)
..+|
T Consensus 419 AqkW 422 (504)
T KOG0624|consen 419 AQKW 422 (504)
T ss_pred HHhc
Confidence 6554
No 39
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=7.6e-20 Score=170.24 Aligned_cols=435 Identities=15% Similarity=0.090 Sum_probs=326.2
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGK 149 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 149 (584)
...++-.+...+...|+ ++.+.+.|++++.. .-...+.|+.++.+|...|.-..|+.+.++.+...+.
T Consensus 322 d~ai~d~Lt~al~~~g~-f~~lae~fE~~~~~---------~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~-- 389 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQ-FEVLAEQFEQALPF---------SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ-- 389 (799)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHh---------hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC--
Confidence 44455566667777888 88888888888865 2234667888999999999999999998887765421
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhC-----------CHHH
Q 007930 150 GSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAM-----------QFDE 218 (584)
Q Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~ 218 (584)
+.++. ..++.-..|....+.+++++.+..+++...... .......++..+|.+|..+- ...+
T Consensus 390 -ps~~s---~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 390 -PSDIS---VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred -CCcch---HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 22222 224455567778899999999999999976332 23345667778888775432 2446
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCh
Q 007930 219 AENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRF 298 (584)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 298 (584)
++..++++++..+.+. .+.+.++.-|..+++.+.|+++..+++.+ +..+...++..++.++...+++
T Consensus 463 slqale~av~~d~~dp--------~~if~lalq~A~~R~l~sAl~~~~eaL~l-----~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDP--------LVIFYLALQYAEQRQLTSALDYAREALAL-----NRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred HHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHhhhhhh
Confidence 6777777777655444 35889999999999999999999999876 3556678889999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 007930 299 DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYE 378 (584)
Q Consensus 299 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 378 (584)
.+|+...+.+++-+ +.+......-..+-...++.++|+..+...+.+.+...+-...-+........+.+..
T Consensus 530 ~~Al~vvd~al~E~--------~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 530 KEALDVVDAALEEF--------GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL 601 (799)
T ss_pred HHHHHHHHHHHHHh--------hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc
Confidence 99999999999874 3333333444455556899999999999999988743211000111222233344444
Q ss_pred HhcCHHHHHHHHHHHHHHHHhC----------------CC---CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 379 ALNEHEEALKLLQKAMKLLEDT----------------PG---YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 379 ~~g~~~~A~~~~~~a~~~~~~~----------------~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
..++..+|.+.+.++....... ++ .+......+...+..+...++.++|..++.++-.+
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-- 679 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-- 679 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--
Confidence 4556666776666665544321 01 01123445667888999999999999999999885
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHH--HHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE--ILEY 517 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~ 517 (584)
.+.....|+..|.++...|+.++|.+.|..|+.+ +|+...+...+|.++...|+..-|.. .+..
T Consensus 680 ------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 680 ------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred ------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 3556889999999999999999999999999999 88888999999999999999988888 9999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhh
Q 007930 518 ILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 518 a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
++++ +|.+.++|+.||.+...+|+.++|. .++..++...+..+
T Consensus 746 alr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 746 ALRL--------DPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEESNP 788 (799)
T ss_pred HHhh--------CCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccCCC
Confidence 9998 9999999999999999999999998 99998887655443
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=4.7e-20 Score=174.62 Aligned_cols=392 Identities=16% Similarity=0.128 Sum_probs=291.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
...+...|+..+..|++++|+..+.+++...+ ..+ ..|..||.+|..+|+.+++...+-.|-.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-----~~~----~ay~tL~~IyEqrGd~eK~l~~~llAAHL------- 202 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP-----RNP----IAYYTLGEIYEQRGDIEKALNFWLLAAHL------- 202 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-----cch----hhHHHHHHHHHHcccHHHHHHHHHHHHhc-------
Confidence 55666788888999999999999999998863 333 34999999999999999999998888777
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 195 SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA 274 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 274 (584)
+|.....|..++.....+|++.+|.-+|.++++..|... ...+..+.+|.++|+...|+..|.+.+....
T Consensus 203 -~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p- 272 (895)
T KOG2076|consen 203 -NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDP- 272 (895)
T ss_pred -CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-
Confidence 666679999999999999999999999999999877654 3478889999999999999999998876532
Q ss_pred cCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 275 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
..+...........+..+...++-+.|++.++.++.... .......+..++.++.....++.|...........
T Consensus 273 ~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~ 346 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRE 346 (895)
T ss_pred chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccc
Confidence 001112333345557778888888999999999888321 23334456678899999999999988877665511
Q ss_pred hcC--------------------CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007930 355 AKP--------------------APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQM 414 (584)
Q Consensus 355 ~~~--------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 414 (584)
.+. .+..-...+..+...++.+..+.++..+++..+..--. -........+..+
T Consensus 347 ~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n------~~~~d~~dL~~d~ 420 (895)
T KOG2076|consen 347 SEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN------VWVSDDVDLYLDL 420 (895)
T ss_pred cCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc------CChhhhHHHHHHH
Confidence 000 00111122222355566666666666666655432111 1133346788899
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 494 (584)
+.++...|++.+|+.+|..+... .....+.+|..+|.||..+|.+++|+++|++++.. .|+..++
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~D~ 485 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNLDA 485 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCchhh
Confidence 99999999999999999988763 22234679999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKVRE-EKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
...|+.++.++|++++|.+.++....--. ..-+...+...........++...|+.++-+....+
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999888877441100 000011233456778889999999999987643333
No 41
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=8.5e-19 Score=175.16 Aligned_cols=408 Identities=10% Similarity=-0.035 Sum_probs=293.9
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 007930 112 LELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA 191 (584)
Q Consensus 112 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (584)
|..+...+..+.+..+.|+++.|+..|+++++.. +..+.. ...+..++...|+.++|+.++++++.-
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-----P~~~~a----v~dll~l~~~~G~~~~A~~~~eka~~p---- 97 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-----PLQSGQ----VDDWLQIAGWAGRDQEVIDVYERYQSS---- 97 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----ccchhh----HHHHHHHHHHcCCcHHHHHHHHHhccC----
Confidence 4456677788999999999999999999999875 333211 126677777889999999999999832
Q ss_pred hCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 192 LGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 192 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
.+.....+..+|.++...|++++|++.|+++++..|... .++..++.++...++.++|++.++++...
T Consensus 98 ----~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~--------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 98 ----MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP--------DLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--------HHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 344556666678899999999999999999999877653 33667889999999999999999987653
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHH---
Q 007930 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE--- 348 (584)
Q Consensus 272 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--- 348 (584)
.+.... +..++.++...++..+|+..++++++. .|.....+..+..+....|-...|.+...
T Consensus 166 ------dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~--------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 166 ------DPTVQN-YMTLSYLNRATDRNYDALQASSEAVRL--------APTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred ------CcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 333222 244566666677887799999999988 56666666655555555554443333322
Q ss_pred --------------------------------------HHHHHHhcCC-----CCCChHHHHHHHHHHHHHHHHhcCHHH
Q 007930 349 --------------------------------------NALRVCAKPA-----PATAPEEIANGLTEISAIYEALNEHEE 385 (584)
Q Consensus 349 --------------------------------------~al~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~ 385 (584)
+++....... ....++....+....-.++...|++.+
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD 310 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 1221111100 011223334455555666777888888
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC
Q 007930 386 ALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR 465 (584)
Q Consensus 386 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (584)
++..|+....... ..+ ..+....|..|...++.++|+.+|++++.-..... ..+........|..++...++
T Consensus 311 vi~~y~~l~~~~~----~~P--~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 311 LIKEYEAMEAEGY----KMP--DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHHHHHHhhhcCC----CCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhccc
Confidence 8888876543221 122 34556789999999999999999999876321110 111122334677888999999
Q ss_pred HHHHHHHHHHHHHHHH-HH--h----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 007930 466 INEATELFEEARGVLE-QE--C----GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~-~~--~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~ 538 (584)
+++|..++++..+... .. . ...+|+..+....++.++...|+..+|++.+++.+.. .|.+...+.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--------aP~n~~l~~ 454 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--------APANQNLRI 454 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 9999999999887321 00 1 1357888899999999999999999999999999987 899999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHHHhH
Q 007930 539 RLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVTKR 576 (584)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~~~ 576 (584)
.+|.++...|.+.+|. ..++.++..+|.....+..+.
T Consensus 455 ~~A~v~~~Rg~p~~A~-~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 455 ALASIYLARDLPRKAE-QELKAVESLAPRSLILERAQA 491 (822)
T ss_pred HHHHHHHhcCCHHHHH-HHHHHHhhhCCccHHHHHHHH
Confidence 9999999999999999 777888877887666554333
No 42
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.88 E-value=6.3e-19 Score=179.70 Aligned_cols=295 Identities=15% Similarity=0.067 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
..+|..+...|...|++++|+.+|++..+.. ..+ ...++..+...+...|++++|.+.+...++. + .+
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---~~p----d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g-~~ 357 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSG---VSI----DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----G-FP 357 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhccchHHHHHHHHHHHHh----C-CC
Confidence 4567777777888888888888887765421 111 1246888899999999999999999876542 2 22
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
....++..+...|.+.|++++|...|++..+ ....+|+.+...|...|+.++|++.|++..+....
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~--- 423 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR-----------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA--- 423 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 3345678899999999999999999987532 23457899999999999999999999998765322
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
|+ ..++..+...+...|..++|.++|+...+...-. +. ...|..+..++.+.|++++|.+.+++.-
T Consensus 424 ----Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~----p~-~~~y~~li~~l~r~G~~~eA~~~~~~~~---- 489 (697)
T PLN03081 424 ----PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK----PR-AMHYACMIELLGREGLLDEAYAMIRRAP---- 489 (697)
T ss_pred ----CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC----CC-ccchHhHHHHHHhcCCHHHHHHHHHHCC----
Confidence 22 4568888889999999999999999877542211 11 3456788999999999999999876531
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
..+ ...+|..+...+...|+++.|...+++.+++ .|+....|..++.+|...|++++|.+.+++..
T Consensus 490 -----~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 490 -----FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred -----CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 122 2457899999999999999999999998876 66666788999999999999999999999877
Q ss_pred HHHHHH-h-----------------CCCChhHHHHHHHHHHHHHHhc
Q 007930 520 KVREEK-L-----------------GTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 520 ~~~~~~-~-----------------~~~~p~~~~~~~~l~~~~~~~g 548 (584)
+.--+. . +..||...+.+..+..+..+..
T Consensus 556 ~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 602 (697)
T PLN03081 556 RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS 602 (697)
T ss_pred HcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHH
Confidence 542110 0 1247777777776666665543
No 43
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=2.5e-17 Score=169.49 Aligned_cols=342 Identities=13% Similarity=0.073 Sum_probs=248.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh
Q 007930 76 KLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL 155 (584)
Q Consensus 76 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (584)
.+-..+...|+ +++|...+++..+. ...|+ ...+..+...|.+.|+.++|..+|+++.+.. . .+.
T Consensus 442 ~LL~a~~k~g~-~e~A~~lf~~M~~~-------Gl~pD-~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v-~Pd 506 (1060)
T PLN03218 442 MLMSVCASSQD-IDGALRVLRLVQEA-------GLKAD-CKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----V-EAN 506 (1060)
T ss_pred HHHHHHHhCcC-HHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----C-CCC
Confidence 33444555566 66666666655442 12222 4566778888888999999998888876431 1 111
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Q 007930 156 AKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235 (584)
Q Consensus 156 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (584)
..+|..+...|.+.|++++|+..|.+.... .-.|+ ..+|..+...|.+.|++++|.++++++........
T Consensus 507 --vvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~- 576 (1060)
T PLN03218 507 --VHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPID- 576 (1060)
T ss_pred --HHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC-
Confidence 145788888899999999999988887654 11233 46788888899999999999999988865311111
Q ss_pred CCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 007930 236 SASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKAT 315 (584)
Q Consensus 236 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 315 (584)
++ ..++..+...|.+.|++++|.+.|++..+. .......+|..+...|.+.|++++|+.+|.+..+.
T Consensus 577 PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~---- 643 (1060)
T PLN03218 577 PD----HITVGALMKACANAGQVDRAKEVYQMIHEY-----NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK---- 643 (1060)
T ss_pred Cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Confidence 11 245788888999999999999999876432 22233467888999999999999999999987653
Q ss_pred hcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007930 316 RGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395 (584)
Q Consensus 316 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 395 (584)
.......++..+...+...|++++|.++++++.+.... + ...++..+...|.+.|++++|.+.|++...
T Consensus 644 ---Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-------p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 644 ---GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-------L-GTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred ---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 12223567888999999999999999999998765321 1 246888999999999999999999988654
Q ss_pred HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 007930 396 LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEE 475 (584)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (584)
. +..+. ..+|..+...|.+.|++++|.++|++.... +- .| ...++..+...+...|++++|..++.+
T Consensus 713 ~-----g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~----Gi--~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 713 I-----KLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL----GL--CP-NTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred c-----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3 22222 356888999999999999999999987642 11 12 245777788899999999999999999
Q ss_pred HHHH
Q 007930 476 ARGV 479 (584)
Q Consensus 476 a~~~ 479 (584)
+++.
T Consensus 780 M~k~ 783 (1060)
T PLN03218 780 AKED 783 (1060)
T ss_pred HHHc
Confidence 8775
No 44
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.86 E-value=4.5e-17 Score=172.98 Aligned_cols=417 Identities=16% Similarity=0.071 Sum_probs=298.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchh
Q 007930 75 LKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA 154 (584)
Q Consensus 75 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 154 (584)
...+..+...|+ +.+|+.++..+- +.......+...+......|++..+..++...-... . ..++
T Consensus 345 ~raa~~~~~~g~-~~~Al~~a~~a~----------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~---~~~~ 409 (903)
T PRK04841 345 RAAAEAWLAQGF-PSEAIHHALAAG----------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-L---LENP 409 (903)
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHCC----------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-H---hcCc
Confidence 333444455555 555555443321 233445666677888888898887777665531111 0 1112
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 155 LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSD-PRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 155 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
. .....+.++...|++++|...+..+...........+ .....+...++.++...|++++|...+++++...+..
T Consensus 410 ~----l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (903)
T PRK04841 410 R----LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLT 485 (903)
T ss_pred c----hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Confidence 1 2455677788999999999999988766432110111 2244566678889999999999999999998753221
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 007930 234 GHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313 (584)
Q Consensus 234 ~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 313 (584)
.....+.+...+|.++...|++++|...+.+++......+.......++..+|.++...|++++|...+++++....
T Consensus 486 ---~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 562 (903)
T PRK04841 486 ---WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIE 562 (903)
T ss_pred ---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 22334556788999999999999999999999998887777767777889999999999999999999999999987
Q ss_pred HhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007930 314 ATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA 393 (584)
Q Consensus 314 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 393 (584)
...+...+.....+..+|.++...|++++|...+.+++.+.... + ......++..++.++...|++++|...+.++
T Consensus 563 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~--~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 563 EQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY--Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc--C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76543334445567788999999999999999999999987642 1 2234567788999999999999999999999
Q ss_pred HHHHHhCCCCcccH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHH
Q 007930 394 MKLLEDTPGYHSTI-AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATEL 472 (584)
Q Consensus 394 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 472 (584)
..+.... +..... ..........+...|+.+.|...+...... ...........+..++.++...|++++|...
T Consensus 639 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 713 (903)
T PRK04841 639 ENLLGNG-RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP----EFANNHFLQGQWRNIARAQILLGQFDEAEII 713 (903)
T ss_pred HHHHhcc-cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC----CCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876554 211111 111111234455678999988887664431 0011111223456789999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 473 FEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 473 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
+++++...+.... ....+.++..+|.++...|+.++|...+.+++++...
T Consensus 714 l~~al~~~~~~g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 714 LEELNENARSLRL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 9999998665433 3456778899999999999999999999999998643
No 45
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=5.5e-20 Score=153.59 Aligned_cols=280 Identities=15% Similarity=0.069 Sum_probs=232.0
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchh-hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 007930 112 LELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA-LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190 (584)
Q Consensus 112 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 190 (584)
|....+++. .+++...+...|.......+++........+. ....+--..+|.||..+|-+.+|...++.+++.
T Consensus 178 p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--- 252 (478)
T KOG1129|consen 178 PTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--- 252 (478)
T ss_pred hHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---
Confidence 455555543 45667788888888777777665432222221 122233568999999999999999999999887
Q ss_pred HhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 191 ALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 191 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
....+.+..|+.+|....+...|+..+.+.++.+|... ..+..++.++..++++++|+++|+.+++
T Consensus 253 ------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V--------T~l~g~ARi~eam~~~~~a~~lYk~vlk 318 (478)
T KOG1129|consen 253 ------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV--------TYLLGQARIHEAMEQQEDALQLYKLVLK 318 (478)
T ss_pred ------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh--------hhhhhhHHHHHHHHhHHHHHHHHHHHHh
Confidence 23457788899999999999999999999998776543 4478899999999999999999999887
Q ss_pred HHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 271 VMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 271 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
. ++...++...+|.-|+..++.+-|+.+|++.+++ .......+.++|.|+...++++-++..|+++
T Consensus 319 ~------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm--------G~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 319 L------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM--------GAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred c------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh--------cCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 4 6666677777888999999999999999999998 5667889999999999999999999999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
+....+ +...+++|+++|.+....|++.-|..+|+-++...++. ..+++++|.+-.+.|+.++|..+
T Consensus 385 lstat~------~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-------~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 385 LSTATQ------PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-------GEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HhhccC------cchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-------HHHHHhHHHHHhhcCchHHHHHH
Confidence 998754 34568999999999999999999999999988765554 78899999999999999999999
Q ss_pred HHHHHHH
Q 007930 431 FESAVVK 437 (584)
Q Consensus 431 ~~~a~~~ 437 (584)
++.+-..
T Consensus 452 l~~A~s~ 458 (478)
T KOG1129|consen 452 LNAAKSV 458 (478)
T ss_pred HHHhhhh
Confidence 9998875
No 46
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.4e-18 Score=151.43 Aligned_cols=396 Identities=18% Similarity=0.176 Sum_probs=259.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
+|...-.+.++..++...|+ |++|+.-..+.+++ .|+.+..|..+|..++-+|+|++|+..|.+.++..+
T Consensus 32 ~p~nhvlySnrsaa~a~~~~-~~~al~da~k~~~l---------~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~ 101 (539)
T KOG0548|consen 32 SPTNHVLYSNRSAAYASLGS-YEKALKDATKTRRL---------NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDP 101 (539)
T ss_pred CCCccchhcchHHHHHHHhh-HHHHHHHHHHHHhc---------CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 44455567778888899999 99999999999986 677899999999999999999999999999998753
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcC---------------------ChHHHHHHHHHHHHHHHHHhCCCChHHHHHH--
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMG---------------------LLDRSVWCYESGLEIQIEALGDSDPRVAETC-- 203 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g---------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-- 203 (584)
. ... .+..++.++.... ++......|...++..++ .|.....+
T Consensus 102 ~-----n~~----L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~-----~p~~l~~~l~ 167 (539)
T KOG0548|consen 102 S-----NKQ----LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK-----NPTSLKLYLN 167 (539)
T ss_pred c-----hHH----HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc-----CcHhhhcccc
Confidence 2 221 2344444441110 001111122222222211 11111111
Q ss_pred -----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC------------CC------HHHHHHHHHHHHHHHHhccHHH
Q 007930 204 -----RYLAEAHIQAMQFDEAENLCKKILEIHREHGHS------------AS------LEEAADRRLMALVYEAKADYES 260 (584)
Q Consensus 204 -----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~------~~~a~~~~~l~~~~~~~g~~~~ 260 (584)
..++.+.. .+.. ..+.......+....+ +. ...+.-...+|.......++..
T Consensus 168 d~r~m~a~~~l~~-~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 168 DPRLMKADGQLKG-VDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred cHHHHHHHHHHhc-Cccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 01111000 0000 0000000000000000 00 1135567789999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccH
Q 007930 261 ALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL 340 (584)
Q Consensus 261 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 340 (584)
|+++|..++.+ . .....+.+.+.+|+..|.+.+.+....++++...+.... ....+.++..+|..|...+++
T Consensus 243 a~q~y~~a~el------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad-~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 243 AIQHYAKALEL------A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRAD-YKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred HHHHHHHHHhH------h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHH-HHHHHHHHHHhhhhhhhHHhH
Confidence 99999999886 3 455667889999999999999999998888765443211 233566666788899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 007930 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV 420 (584)
Q Consensus 341 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (584)
+.|+.+|++++...+. ..+.......++++...+...-+.+.. +.-...-|..++.
T Consensus 315 ~~ai~~~~kaLte~Rt-----------------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-------A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRT-----------------PDLLSKLKEAEKALKEAERKAYINPEK-------AEEEREKGNEAFK 370 (539)
T ss_pred HHHHHHHHHHhhhhcC-----------------HHHHHHHHHHHHHHHHHHHHHhhChhH-------HHHHHHHHHHHHh
Confidence 9999999998876543 222333334444444433332222221 3333455888888
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 500 (584)
.|+|..|+..|.+++.. .|..+..|.+.|.+|..+|++..|+...+.++++ +|....+|..-|.
T Consensus 371 ~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGA 434 (539)
T ss_pred ccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHH
Confidence 88888888888888773 4556788888888888888888888888888888 8888888888888
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 501 TYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 501 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
++..+.+|++|.+.|+++++. +|...++...+.+++..+
T Consensus 435 al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHh
Confidence 888888888888888888887 788888777777777754
No 47
>PLN03077 Protein ECB2; Provisional
Probab=99.86 E-value=1.5e-17 Score=173.95 Aligned_cols=401 Identities=14% Similarity=0.042 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..+..+...+.+.|+ +++|...|++... ++ ..+|+.+...|.+.|++++|+.+|.+..... ..+
T Consensus 223 ~~~n~Li~~y~k~g~-~~~A~~lf~~m~~---------~d---~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g---~~P 286 (857)
T PLN03077 223 DVVNALITMYVKCGD-VVSARLVFDRMPR---------RD---CISWNAMISGYFENGECLEGLELFFTMRELS---VDP 286 (857)
T ss_pred chHhHHHHHHhcCCC-HHHHHHHHhcCCC---------CC---cchhHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC
Confidence 345556667778888 7777777665321 11 2345666667777777777777776654421 000
Q ss_pred chh------------------------------hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHH
Q 007930 152 DRA------------------------------LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAE 201 (584)
Q Consensus 152 ~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (584)
+.. .....++..+...|.+.|++++|...|++... | ...
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~~ 355 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----------K-DAV 355 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----------C-Cee
Confidence 000 00112355555566666666666666554311 1 123
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH-------------------------------HHHHHHHHHH
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE-------------------------------EAADRRLMAL 250 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------------------------~a~~~~~l~~ 250 (584)
+|..+...|.+.|++++|+++|++..+..- .++... ...++..+..
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~---~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNV---SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 455666666666666666666665533210 000000 0122334444
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHH------
Q 007930 251 VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA------ 324 (584)
Q Consensus 251 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------ 324 (584)
.|.+.|++++|.+.|++.. .+ ....|..+...|...|++++|+..|++.... . .|+..
T Consensus 433 ~y~k~g~~~~A~~vf~~m~--------~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~---~pd~~t~~~lL 496 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIP--------EK-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----L---KPNSVTLIAAL 496 (857)
T ss_pred HHHHcCCHHHHHHHHHhCC--------CC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----C---CCCHhHHHHHH
Confidence 4555555555555554321 01 1224455555555556666666555554321 0 11111
Q ss_pred ----------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 007930 325 ----------------------------SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI 376 (584)
Q Consensus 325 ----------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 376 (584)
.....+...|.+.|+.++|...|+.. .. ...+|+.+...
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~ 563 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTG 563 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHH
Confidence 11122334555555555555555443 00 13567777778
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 007930 377 YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM 456 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (584)
|...|+.++|++.|++..+. +..+. ..++..+-..+.+.|+.++|..+|+...+... ..| ....|..+
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~-----g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g-----i~P-~~~~y~~l 631 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVES-----GVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYS-----ITP-NLKHYACV 631 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHc-----CCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhC-----CCC-chHHHHHH
Confidence 88888888888888776542 11111 12344555667778888888888877663211 112 13567778
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007930 457 GLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536 (584)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~ 536 (584)
..++.+.|++++|.+.+++.- + .|+ ..+|..|-..+...|+.+.|....++.+++ .|+....
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~-~--------~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--------~p~~~~~ 693 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMP-I--------TPD-PAVWGALLNACRIHRHVELGELAAQHIFEL--------DPNSVGY 693 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCC-C--------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcch
Confidence 888888888888887776641 1 444 356666666777788888888777777776 7888888
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 537 KERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+..|+.+|...|+|++|. +..+.+.
T Consensus 694 y~ll~n~ya~~g~~~~a~-~vr~~M~ 718 (857)
T PLN03077 694 YILLCNLYADAGKWDEVA-RVRKTMR 718 (857)
T ss_pred HHHHHHHHHHCCChHHHH-HHHHHHH
Confidence 999999999999999998 5555543
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.6e-19 Score=150.93 Aligned_cols=294 Identities=15% Similarity=0.145 Sum_probs=241.3
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 197 PRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA--SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA 274 (584)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 274 (584)
|....+++. .+++...+...|...+...+++........ ....-+.-..+|.+|..+|-+.+|.+.++.++.
T Consensus 178 p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~---- 251 (478)
T KOG1129|consen 178 PTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLT---- 251 (478)
T ss_pred hHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhh----
Confidence 444444443 245566677777777766666544332211 111223345799999999999999999998876
Q ss_pred cCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 275 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
.....+.+..++.+|....+...|+..+.+.++. .|.....+..++.++..++++++|.++|+.+++..
T Consensus 252 ---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 252 ---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred ---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 3455677888999999999999999999999987 68889999999999999999999999999999875
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
.. ..++...+|.-|+..++++-|+.+|++.+++-... ...+.++|.+++..++++-++..|+++
T Consensus 321 ~~---------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 321 PI---------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred Cc---------cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 32 35666677888999999999999999999986554 567889999999999999999999999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
+..... +...+.+|+++|.+....|++.-|..+|+-++.- +++..+++.+||.+-.+.|+.++|..+
T Consensus 385 lstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 385 LSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HhhccC-----cchhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 987553 3346789999999999999999999999999987 889999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
+..+-.+ .|+..+..++++.+-
T Consensus 452 l~~A~s~--------~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 452 LNAAKSV--------MPDMAEVTTNLQFMS 473 (478)
T ss_pred HHHhhhh--------CccccccccceeEEe
Confidence 9999988 788777777776543
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=2.1e-17 Score=154.17 Aligned_cols=398 Identities=19% Similarity=0.178 Sum_probs=289.5
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIG 148 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 148 (584)
...+.++..+..+...|. -..|+...+..+..-+ ..++....+..-..|+.+.+.+++++.+..+++......
T Consensus 355 ~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~ 427 (799)
T KOG4162|consen 355 GEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSE------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ 427 (799)
T ss_pred hhHHHHHHHHHHHHHhcc-chHHHHHHHhhccccc------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh
Confidence 345566777777777777 5677776666665421 112223334444556667899999999999999976332
Q ss_pred cCCchhhhHHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHH
Q 007930 149 KGSDRALAKFSGYMQLGDTCSSMG-----------LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFD 217 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 217 (584)
.+.-.+ .++..+|.+|..+- ...+++..++++++. +|....+.+.++.-|..+++.+
T Consensus 428 ~~~l~~----~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--------d~~dp~~if~lalq~A~~R~l~ 495 (799)
T KOG4162|consen 428 RSHLKP----RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--------DPTDPLVIFYLALQYAEQRQLT 495 (799)
T ss_pred hhhhhh----hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--------CCCCchHHHHHHHHHHHHHhHH
Confidence 222222 45777777776542 245666677777666 5666688999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC
Q 007930 218 EAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR 297 (584)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 297 (584)
.|..+.++++++.+... +.+|..++.++...+++.+|+...+.++.... ++ .........+-...++
T Consensus 496 sAl~~~~eaL~l~~~~~-------~~~whLLALvlSa~kr~~~Al~vvd~al~E~~---~N---~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 496 SALDYAREALALNRGDS-------AKAWHLLALVLSAQKRLKEALDVVDAALEEFG---DN---HVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHHHHhcCCcc-------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh---hh---hhhchhhhhhhhhccc
Confidence 99999999999854433 45799999999999999999999998876432 21 1122223334445899
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCc-ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC---------------CCC
Q 007930 298 FDEAIFSYQKGLTVFKATRGEDH-LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA---------------PAT 361 (584)
Q Consensus 298 ~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~ 361 (584)
.++|+..+...+.+++...+... .........-+.+....++..+|+....++........ +++
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~ 642 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGP 642 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCC
Confidence 99999999999999875432110 01122222233344444566666666666655433110 111
Q ss_pred C--hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 362 A--PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 362 ~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
+ +......|...+..+...++.++|..++.++-.+.+.. +.+|+..|.++...|++.+|.+.|..++.+
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-------~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-- 713 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-------ASVYYLRGLLLEVKGQLEEAKEAFLVALAL-- 713 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--
Confidence 1 22334567778899999999999999999998887655 788999999999999999999999999985
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHH--HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATE--LFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
+|....+...+|.++...|+..-|.. ++..++++ +|...++|+.+|.++...|+.++|.++|..
T Consensus 714 ------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 714 ------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred ------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 34445788899999999999888888 99999999 899999999999999999999999999999
Q ss_pred HHHH
Q 007930 518 ILKV 521 (584)
Q Consensus 518 a~~~ 521 (584)
|+++
T Consensus 780 a~qL 783 (799)
T KOG4162|consen 780 ALQL 783 (799)
T ss_pred HHhh
Confidence 9997
No 50
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5e-17 Score=140.50 Aligned_cols=424 Identities=14% Similarity=0.055 Sum_probs=285.3
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcC-----------CCchhHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSG-----------SGQELELVMSLHMLAAIYCSLGRFEEAVPVLE 139 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 139 (584)
...+..+....+.... |..|...|..++..-..... ....+...+.-...+.+|...++-+.|+....
T Consensus 43 yqll~yl~~~~~h~r~-yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~ 121 (564)
T KOG1174|consen 43 YQVLLYLLNANYKERN-YRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLL 121 (564)
T ss_pred HHHHHHHHhhhHHHHH-HHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHh
Confidence 3344444444444445 66666666666654322111 12233445666788999999999999988776
Q ss_pred HHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH--------------------------hC
Q 007930 140 RSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA--------------------------LG 193 (584)
Q Consensus 140 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~ 193 (584)
...... ..| .....++..+..-++..++.-.|...+..+.-. ..
T Consensus 122 ~~p~t~------r~p----~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~ 191 (564)
T KOG1174|consen 122 QVPPTL------RSP----RINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVP 191 (564)
T ss_pred cCCccc------cch----hHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecC
Confidence 643221 122 224445555555555545544444433221100 00
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAE--NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
+..+.. .....+......++...|. .++-+-....+.+ ...+..+|.+++..|++++|+..|+++..+
T Consensus 192 ~~~dwl--s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~N--------vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~ 261 (564)
T KOG1174|consen 192 DHFDWL--SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCN--------EHLMMALGKCLYYNGDYFQAEDIFSSTLCA 261 (564)
T ss_pred CCccHH--HHHHHHHHHHHhcccchhhhHHHHHHhhccCCcc--------HHHHHHHhhhhhhhcCchHHHHHHHHHhhC
Confidence 111111 1222233333344443333 3333333333222 345778999999999999999999987653
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 007930 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENAL 351 (584)
Q Consensus 272 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 351 (584)
++......-..|.++...|++++-.......+.+ ......-|+--+...+..+++..|+.+-++++
T Consensus 262 ------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 262 ------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------VKYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred ------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 6777777778888888899988877776666665 23344455666777788889999999999998
Q ss_pred HHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHH
Q 007930 352 RVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSF 431 (584)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (584)
....+ ...++...|.++...|+.++|+-.|+.|..+.|.. ..+|..+-.+|...|++.+|....
T Consensus 328 ~~~~r---------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-------L~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 328 DSEPR---------NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-------LEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred ccCcc---------cchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhhchHHHHHHHH
Confidence 87544 25678888999999999999999999988877655 577888889999999999999888
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHH-HHHH-hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChH
Q 007930 432 ESAVVKLRASGESKSAFFGIVLNQMG-LACL-QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVE 509 (584)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 509 (584)
+.++..+.. .+.++..+| .++. .-.--++|.+++++++.+ .|....+...+|.++...|+++
T Consensus 392 n~~~~~~~~--------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 392 NWTIRLFQN--------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHHHHHhhc--------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccc
Confidence 888886543 345566664 3333 234457889999999988 8888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 510 DAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 510 ~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+++.++++++.. .|+ ...+..||.++...+.+.+|. ..+.+++..+|++...
T Consensus 456 D~i~LLe~~L~~--------~~D-~~LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 456 DIIKLLEKHLII--------FPD-VNLHNHLGDIMRAQNEPQKAM-EYYYKALRQDPKSKRT 507 (564)
T ss_pred hHHHHHHHHHhh--------ccc-cHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCccchHH
Confidence 999999999886 344 366788999999999999998 8888888887766543
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.9e-17 Score=139.65 Aligned_cols=402 Identities=13% Similarity=0.034 Sum_probs=289.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
....|.....-...+.++...++ -+.|+....+...- .. ....-..++..+-.-++..++.--|...+.
T Consensus 90 S~~~~~~~e~~r~~aecy~~~~n-~~~Ai~~l~~~p~t-------~r---~p~inlMla~l~~~g~r~~~~vl~ykevvr 158 (564)
T KOG1174|consen 90 SYPEFGDAEQRRRAAECYRQIGN-TDMAIETLLQVPPT-------LR---SPRINLMLARLQHHGSRHKEAVLAYKEVIR 158 (564)
T ss_pred cCCCcccHHHHHHHHHHHHHHcc-chHHHHHHhcCCcc-------cc---chhHHHHHHHHHhccccccHHHHhhhHHHH
Confidence 33455666777778888888887 56666655443321 11 122233455555555554444444443333
Q ss_pred HHHh--------------------------ccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 144 VVDI--------------------------GKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDP 197 (584)
Q Consensus 144 ~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (584)
.++- ...+..+. ......+.+....++...|...+--+-.. ..-+
T Consensus 159 ecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dw---ls~wika~Aq~~~~~hs~a~~t~l~le~~------~~lr 229 (564)
T KOG1174|consen 159 ECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDW---LSKWIKALAQMFNFKHSDASQTFLMLHDN------TTLR 229 (564)
T ss_pred hcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccH---HHHHHHHHHHHHhcccchhhhHHHHHHhh------ccCC
Confidence 2210 00011111 11223344444555555555443222111 1146
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
.....+..+|.+++..|++++|+..|+++.-+.+... ......|.++...|++++-.........+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i--------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~------ 295 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV--------EAMDLYAVLLGQEGGCEQDSALMDYLFAK------ 295 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh--------hhHHHHHHHHHhccCHhhHHHHHHHHHhh------
Confidence 6788899999999999999999999999988766543 33667788888899988876666554432
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
....+.-++.-+...+...++..|+.+-+++++. ++....++...|.++...|+.++|+-.|+.+..+.
T Consensus 296 ~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--- 364 (564)
T KOG1174|consen 296 VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--- 364 (564)
T ss_pred hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---
Confidence 2223334455677788899999999999999998 78888899999999999999999999999999886
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH-HHHH-HhccHHHHHHHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG-VMLY-VVGRYGEARSSFESAV 435 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~a~ 435 (584)
|....+|..|-.+|...|++.+|....+.++...+.. +.++..+| .++. .-.--++|.+++++++
T Consensus 365 ------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 365 ------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-------ARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred ------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-------hhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 4457899999999999999999999999999998877 55555554 3333 3334588999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 007930 436 VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEIL 515 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 515 (584)
.+ .|.+..+-..++.++...|.++.++.++++.+.. .++. ..+..||.++...+.+++|..+|
T Consensus 432 ~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--------~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 432 KI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--------FPDV-NLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred cc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--------cccc-HHHHHHHHHHHHhhhHHHHHHHH
Confidence 85 5566778889999999999999999999999997 4554 67889999999999999999999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 516 EYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 516 ~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
..|+.+ +|.+..++..+-.+-....
T Consensus 495 ~~ALr~--------dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 495 YKALRQ--------DPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHhc--------CccchHHHHHHHHHHhccC
Confidence 999998 8999988888877655444
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.84 E-value=1e-17 Score=141.19 Aligned_cols=325 Identities=16% Similarity=0.102 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.-.+.+|..+...|++.+|+..|..+++. +|....+++..|.+|...|+-.-|+.-+.+++++.|...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~---- 106 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM---- 106 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH----
Confidence 44788999999999999999999999998 899999999999999999999999999999999876544
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
.+....|.++..+|++++|..-|.+.+.. ........ +|..-+..+
T Consensus 107 ----~ARiQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~-----------------eaqskl~~~---------- 152 (504)
T KOG0624|consen 107 ----AARIQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVL-----------------EAQSKLALI---------- 152 (504)
T ss_pred ----HHHHHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhH-----------------HHHHHHHhH----------
Confidence 34778899999999999999999987652 11111111 111111111
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.....+......+...|++..|+++....+++. +..+..+...+.+|...|+...|+.-++.+-++..
T Consensus 153 ---~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~---------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 153 ---QEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ---------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred ---HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC---------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 111223334455667899999999999999985 55678888999999999999999999999988876
Q ss_pred hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH---------HHHHHhhCCHHHH
Q 007930 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM---------GLACLQLYRINEA 469 (584)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~g~~~~A 469 (584)
++ ...++.++.+++..|+.+.++...++++++-.. +...-..|..+ +.-....++|.++
T Consensus 221 Dn-------Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpd-----HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~c 288 (504)
T KOG0624|consen 221 DN-------TEGHYKISQLLYTVGDAENSLKEIRECLKLDPD-----HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTEC 288 (504)
T ss_pred cc-------hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc-----hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 65 567778999999999999999999998885221 11111112111 2333455777777
Q ss_pred HHHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 470 TELFEEARGVLEQECGSCHLD----TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 470 ~~~~~~a~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
++..++.++. .|. ...+...+..|+..-|++.+|+....+++++ +|+++.++..-+.+|.
T Consensus 289 le~ge~vlk~--------ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 289 LEAGEKVLKN--------EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHHhc--------CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHh
Confidence 7777777765 444 3345667788999999999999999999998 8999999999999999
Q ss_pred HhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 546 ETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 546 ~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.-..|++|+ ..++.+.+.+++...
T Consensus 353 ~dE~YD~AI-~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 353 GDEMYDDAI-HDYEKALELNESNTR 376 (504)
T ss_pred hhHHHHHHH-HHHHHHHhcCcccHH
Confidence 999999999 899999887766543
No 53
>PLN03077 Protein ECB2; Provisional
Probab=99.83 E-value=1.4e-17 Score=174.18 Aligned_cols=403 Identities=15% Similarity=0.107 Sum_probs=255.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCch
Q 007930 74 LLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDR 153 (584)
Q Consensus 74 l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 153 (584)
+..+-..+...++ +..+.+.+...++. + ..+ ....+..+-..|.+.|++++|...|++... + +
T Consensus 190 ~~~ll~~~~~~~~-~~~~~~~~~~~~~~------g-~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~-d 252 (857)
T PLN03077 190 FPCVLRTCGGIPD-LARGREVHAHVVRF------G-FEL-DVDVVNALITMYVKCGDVVSARLVFDRMPR-------R-D 252 (857)
T ss_pred HHHHHHHhCCccc-hhhHHHHHHHHHHc------C-CCc-ccchHhHHHHHHhcCCCHHHHHHHHhcCCC-------C-C
Confidence 3334445556777 88888888887753 1 111 234566788899999999999999988531 1 1
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----------------------------HhCCCChHHHHHHHH
Q 007930 154 ALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE----------------------------ALGDSDPRVAETCRY 205 (584)
Q Consensus 154 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~~~~~~~~ 205 (584)
. .+|..+...|.+.|++++|+..|.+....... ...........++..
T Consensus 253 ~----~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 253 C----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred c----chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 1 34888888999999999999999987653100 000000112334555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 007930 206 LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAID 285 (584)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 285 (584)
+...|.+.|++++|.+.|++... . + ..+|..+...|.+.|++++|++.|++... .+..|+. .++
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~-----~--d----~~s~n~li~~~~~~g~~~~A~~lf~~M~~----~g~~Pd~-~t~ 392 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMET-----K--D----AVSWTAMISGYEKNGLPDKALETYALMEQ----DNVSPDE-ITI 392 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----C--C----eeeHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCCCCc-eeH
Confidence 56666666666666666665421 0 0 12366666666677777777766665322 2222222 123
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHH
Q 007930 286 VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEE 365 (584)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 365 (584)
..+-..+...|++++|.+.+..+.+. .......++..+...|.+.|++++|.+.|++..+.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~-------g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~------------ 453 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERK-------GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK------------ 453 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHh-------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC------------
Confidence 33334555666666666666655443 12334556777788888888888888888764211
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccH-------------------------------HHHHHHH
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTI-------------------------------AGIEAQM 414 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~l 414 (584)
...+|+.+...|...|+.++|+..|++.... ...+.... ..++..+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~---~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLT---LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC---CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 1346777888888888888888888887531 11111100 0112344
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 494 (584)
...|.+.|+.++|...|+.. . . ...+|+.+...|...|+.++|+++|++..+. ...|+. .+
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-~--------~---d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~-~T 591 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-E--------K---DVVSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDE-VT 591 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-C--------C---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCc-cc
Confidence 56777888888887777653 1 1 2467888889999999999999999987753 123443 45
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENL 561 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~ 561 (584)
+..+-..+.+.|+.++|..+|+...+.. | ..|+ ...+..+..++.+.|++++|. ..++.+
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~----g-i~P~-~~~y~~lv~~l~r~G~~~eA~-~~~~~m 651 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKY----S-ITPN-LKHYACVVDLLGRAGKLTEAY-NFINKM 651 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHh----C-CCCc-hHHHHHHHHHHHhCCCHHHHH-HHHHHC
Confidence 6666677888999999999998877431 1 1343 367888888999999999998 555543
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.83 E-value=7.4e-16 Score=141.19 Aligned_cols=416 Identities=16% Similarity=0.097 Sum_probs=284.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..++..+.-.+..++ |.+.+...+..+.- .|+..+.+...|..+..+|+-++|..+...++....
T Consensus 8 ~~lF~~~lk~yE~kQ-YkkgLK~~~~iL~k---------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~----- 72 (700)
T KOG1156|consen 8 NALFRRALKCYETKQ-YKKGLKLIKQILKK---------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL----- 72 (700)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHh---------CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-----
Confidence 457777888889998 99999998888873 445667777899999999999999999999887432
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHR 231 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 231 (584)
.+. .+|+.+|.++....+|++|+.+|+.|+.+ .++...++..++.+..+.++++.....-.+.++..+
T Consensus 73 ~S~----vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 73 KSH----VCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred ccc----hhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 222 46899999999999999999999999999 788899999999999999999999888888888776
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007930 232 EHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ--ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGL 309 (584)
Q Consensus 232 ~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (584)
... ..|...+..+...|++..|....+..........+ ......+......+....|.+++|.+.+..--
T Consensus 141 ~~r--------a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 141 SQR--------ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred hhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 654 34888888899999999999888776554431111 22333444455556666677666666554422
Q ss_pred HHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh---------
Q 007930 310 TVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL--------- 380 (584)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------- 380 (584)
.- ..+........+.++..++++++|...+...+...+.. ...+..+-.++..-
T Consensus 213 ~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn---------~~Yy~~l~~~lgk~~d~~~~lk~ 275 (700)
T KOG1156|consen 213 KQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN---------LDYYEGLEKALGKIKDMLEALKA 275 (700)
T ss_pred hH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh---------HHHHHHHHHHHHHHhhhHHHHHH
Confidence 21 12333444556677777777777777777666553221 11111111111000
Q ss_pred -------------------------------------------------------cCHHHHHHHHHHHHHHHHhCC----
Q 007930 381 -------------------------------------------------------NEHEEALKLLQKAMKLLEDTP---- 401 (584)
Q Consensus 381 -------------------------------------------------------g~~~~A~~~~~~a~~~~~~~~---- 401 (584)
.+..+ ...+++.+.......
T Consensus 276 ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~ 354 (700)
T KOG1156|consen 276 LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTG 354 (700)
T ss_pred HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhccccc
Confidence 00000 012222222111111
Q ss_pred ----------CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHH
Q 007930 402 ----------GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATE 471 (584)
Q Consensus 402 ----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (584)
..+....++++.++..+...|+++.|..+++.|+. +.|.....+...|+++...|++++|..
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~ 426 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAA 426 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHH
Confidence 12345677888899999999999999999999998 678888999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHhchH
Q 007930 472 LFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG-TANPDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 472 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~ 550 (584)
++.++.++ +....-+-..-|.-..+.++.++|.+...+--.-.....+ -......+....-|..|.++|++
T Consensus 427 ~l~ea~el--------D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~ 498 (700)
T KOG1156|consen 427 WLDEAQEL--------DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKL 498 (700)
T ss_pred HHHHHHhc--------cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHH
Confidence 99999988 2222223335777788889999998766544332110001 01122233334458899999999
Q ss_pred HHHHHH
Q 007930 551 RNRKGK 556 (584)
Q Consensus 551 ~~A~~~ 556 (584)
..|..+
T Consensus 499 g~ALKk 504 (700)
T KOG1156|consen 499 GLALKK 504 (700)
T ss_pred HHHHHH
Confidence 888743
No 55
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.82 E-value=1.3e-15 Score=161.81 Aligned_cols=420 Identities=15% Similarity=0.033 Sum_probs=294.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
....+...+..+...|++.+|+.++..+- +. ..........+......|++.....++...-.. . .
T Consensus 340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~---------d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~---~ 405 (903)
T PRK04841 340 LPELHRAAAEAWLAQGFPSEAIHHALAAG---------DA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWE-V---L 405 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCC---------CH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-H---H
Confidence 34555666777778888888877665531 11 122244666777788889888776666543111 0 0
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS-ASLEEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
..+|. .....+.++...|++++|...+.++.......... .....+.+...++.++...|++++|..++++++...
T Consensus 406 ~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 482 (903)
T PRK04841 406 LENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL 482 (903)
T ss_pred hcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 11232 34567778889999999999999987765432211 112244556678899999999999999999987642
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALR 352 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 352 (584)
. ..+......+...+|.++...|++++|...+++++........ ......++..+|.++...|++++|..++++++.
T Consensus 483 ~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 483 P-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV--YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred C-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc--hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1122224456788999999999999999999999998776541 233456778999999999999999999999999
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHH
Q 007930 353 VCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFE 432 (584)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (584)
+..... ....+.....+..+|.++...|++++|...+.+++.+.... + .......+..+|.++...|++++|...+.
T Consensus 560 ~~~~~~-~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 560 LIEEQH-LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q-PQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHhc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C-chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 887642 11223334456778999999999999999999999987654 2 22345667789999999999999999999
Q ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 007930 433 SAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAI 512 (584)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 512 (584)
++..+....+.. ..............+...|+.+.|..++....... .+ ........+..++.++...|++++|.
T Consensus 637 ~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~-~~~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 637 RLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FA-NNHFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Cc-cchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 998876553211 11011111112344556789999988876644310 00 01112233568899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 513 EILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
..+++++...+.. +. ......++..+|.++..+|+.++|. ..+..+++.
T Consensus 712 ~~l~~al~~~~~~-g~-~~~~a~~~~~la~a~~~~G~~~~A~-~~L~~Al~l 760 (903)
T PRK04841 712 IILEELNENARSL-RL-MSDLNRNLILLNQLYWQQGRKSEAQ-RVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHh-Cc-hHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHH
Confidence 9999999985443 32 3567788999999999999999998 777776644
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.82 E-value=1.5e-19 Score=162.83 Aligned_cols=265 Identities=22% Similarity=0.235 Sum_probs=114.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHH
Q 007930 204 RYLAEAHIQAMQFDEAENLCKKILEIH-REHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVA 282 (584)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 282 (584)
..+|.++...|++++|++++.+.+... +... ...+..+|.+....++++.|+..|++.+.. ++...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-------~~~~~~~a~La~~~~~~~~A~~ay~~l~~~------~~~~~ 78 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDD-------PEYWRLLADLAWSLGDYDEAIEAYEKLLAS------DKANP 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccc------ccccc
Confidence 367999999999999999997766544 2211 134778999999999999999999987653 33344
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
..+..++.+ ...+++++|+.+++++.+. ......+..+..++...++++++...++++.....
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~------- 141 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYER---------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA------- 141 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--------
T ss_pred ccccccccc-ccccccccccccccccccc---------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-------
Confidence 455666777 7899999999999887664 12334556677788999999999999999775321
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.+.....+..+|.++...|++++|+..++++++..|+. ..+...++.++...|+++++.+.+........
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--- 211 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-------PDARNALAWLLIDMGDYDEAREALKRLLKAAP--- 211 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H---
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc---
Confidence 23446788999999999999999999999999998876 56777899999999999998888877766532
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+ ...+..+|.++...|++++|+.+|++++.. +|..+.++..+|.++...|+.++|..++++++..
T Consensus 212 --~~---~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 212 --DD---PDLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp --TS---CCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT------------------
T ss_pred --CH---HHHHHHHHHHhccccccccccccccccccc--------cccccccccccccccccccccccccccccccccc
Confidence 12 245678899999999999999999999998 8999999999999999999999999999998875
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=2.8e-15 Score=137.37 Aligned_cols=344 Identities=15% Similarity=0.073 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..+..-+..+...+.++-|...|..+++. .|..-..|...+..-...|..++-..++++++...|+...
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv--------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~--- 585 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV--------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEI--- 585 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh--------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchh---
Confidence 34677778888888888888888888888 5666677777887778888899999999999988876542
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
.|...+..+...|+...|...+.++.+. .+..-.++..-..+.....+++.|..+|.++...
T Consensus 586 -----lwlM~ake~w~agdv~~ar~il~~af~~------~pnseeiwlaavKle~en~e~eraR~llakar~~------- 647 (913)
T KOG0495|consen 586 -----LWLMYAKEKWKAGDVPAARVILDQAFEA------NPNSEEIWLAAVKLEFENDELERARDLLAKARSI------- 647 (913)
T ss_pred -----HHHHHHHHHHhcCCcHHHHHHHHHHHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-------
Confidence 3667778888889999999999888764 4555666777777888889999999999988764
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.....++..-+.+...+++.++|+.+++++++.+ |.....|..+|+++..+++.+.|.+.|...++.+|
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f---------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKSF---------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC---------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC
Confidence 4556778888888899999999999999999987 44568899999999999999999999999888877
Q ss_pred hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.. .-.+..++.+-.+.|+.-.|...++++.- .+|.....|.....+-.+.|+.+.|.....+|++
T Consensus 717 ~~-------ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 717 NS-------IPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred CC-------chHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 44667888999999999999999998876 3455567777777888889999999999999887
Q ss_pred HHHHHh--------CC--------------CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007930 479 VLEQEC--------GS--------------CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536 (584)
Q Consensus 479 ~~~~~~--------~~--------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~ 536 (584)
-+.... -. .....+.++..+|.++....++++|.++|.+++.+ +|++-++
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--------d~d~GD~ 853 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--------DPDNGDA 853 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCccchH
Confidence 643211 00 01123457888999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 537 KERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
+..+-..+...|.-++-+ ..+.......|
T Consensus 854 wa~fykfel~hG~eed~k-ev~~~c~~~EP 882 (913)
T KOG0495|consen 854 WAWFYKFELRHGTEEDQK-EVLKKCETAEP 882 (913)
T ss_pred HHHHHHHHHHhCCHHHHH-HHHHHHhccCC
Confidence 999999999999777776 55555554444
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=2.2e-19 Score=161.80 Aligned_cols=264 Identities=25% Similarity=0.239 Sum_probs=114.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH
Q 007930 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS 325 (584)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 325 (584)
..+|.++...|++++|++.+.+.+... .++.....+..+|.+....+++++|+..|++.+.. .+....
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~----~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~ 79 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI----APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccc--------cccccc
Confidence 366999999999999999997654321 13455577788999999999999999999999876 445566
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
.+..++.+ ...+++++|+.+++++.+.... ...+.....++...++++++...++++..... ..
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~----------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGD----------PRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----AP 143 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--------
T ss_pred cccccccc-cccccccccccccccccccccc----------cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CC
Confidence 67777777 7899999999999887765322 34455677788999999999999998774221 12
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
....++..+|.++.+.|+.++|+.+|+++++. .|....+...++.++...|+++++.+.++.....
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~------ 209 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA------ 209 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH------
Confidence 23567888999999999999999999999996 4445678889999999999999988888887776
Q ss_pred CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
.|.....+..+|.++..+|++++|+.+|++++.. +|+++..+..+|.++...|+.++|. ...+.++
T Consensus 210 --~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~ 275 (280)
T PF13429_consen 210 --APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEAL-RLRRQAL 275 (280)
T ss_dssp ---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-----------------
T ss_pred --CcCHHHHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccc-ccccccc
Confidence 2333346788999999999999999999999998 8999999999999999999999998 4444433
No 59
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.81 E-value=3.9e-16 Score=132.68 Aligned_cols=344 Identities=15% Similarity=0.103 Sum_probs=278.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH
Q 007930 119 HMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPR 198 (584)
Q Consensus 119 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (584)
..-|.-++...++++|+..+.+.+....+ ....+..+-.+..+...+|.|++++.+--..++.+... ++...
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~------~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~ 81 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSD------LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDF 81 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHH------HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 34567778888999999999988876532 23344567788889999999999998877777776654 33445
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc
Q 007930 199 VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278 (584)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 278 (584)
..+++.+++..+....++.+++.+.+-.+.+-..... ..-......+|..+..++.++++++.|+.|+++....++.
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 6789999999999999999999988877765322221 1112446679999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC--cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED--HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
.....++..+|.++....|+++|.-+..++.++.....-.+ ......+++.++..+..+|....|.++.+++.++.-.
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999987765232 2345667889999999999999999999999999876
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHH-----HHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGE-----ARSSF 431 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-----A~~~~ 431 (584)
..+.+..+..+..+|.+|...|+.+.|..-|++|....... ++......++...+.++....-..+ |++.-
T Consensus 239 ---~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n 314 (518)
T KOG1941|consen 239 ---HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFN 314 (518)
T ss_pred ---hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 44567778899999999999999999999999999988776 6666667777777887776655555 99999
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 432 ESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
++++++...+|.+. .+......++.+|..+|.-++=...+..+-+.
T Consensus 315 ~r~levA~~IG~K~--~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 315 TRLLEVASSIGAKL--SVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHhhhhH--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 99999999888654 34678889999999998888777777666554
No 60
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.81 E-value=5.2e-16 Score=131.98 Aligned_cols=346 Identities=15% Similarity=0.107 Sum_probs=276.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
.+.-|.-++...++++|+..+.+.+...... ......+..+..+...+|.|++++.+--..+....+.. +...
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~-----~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~--ds~~ 81 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDL-----MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE--DSDF 81 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHH-----HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 4456677788899999999999998875443 34556777788899999999999988777777776665 3445
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
...++.+++..+....++.+++.+-.-.+..-. ......-..+...+|..+..++.++++++.|++++.+..... |.
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpg-t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D~ 158 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPG-TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND--DA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC-CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--Cc
Confidence 566789999999999999999888775543211 101122335667799999999999999999999999987654 34
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC-CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP-ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.....++..||.++....++++|.-+..++.++...... +.+......+++.++..+..+|..-.|.++.+++.++.-.
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999877532 2233345677889999999999999999999999999888
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH-----HHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE-----ATELFE 474 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-----A~~~~~ 474 (584)
. |+....+.....+|++|...|+.+.|..-|+++......+++.... ..++...+.++....-..+ |++.-+
T Consensus 239 ~-Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq--v~al~g~Akc~~~~r~~~k~~~Crale~n~ 315 (518)
T KOG1941|consen 239 H-GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ--VEALDGAAKCLETLRLQNKICNCRALEFNT 315 (518)
T ss_pred h-CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 7 8888888889999999999999999999999999999888876433 5677778888776655555 999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+++++..+++. .......+..++.+|...|.-++=...+.++-+.
T Consensus 316 r~levA~~IG~--K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 316 RLLEVASSIGA--KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHhhh--hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 99999888866 4466788999999999999988877777776554
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=2.1e-17 Score=131.86 Aligned_cols=213 Identities=20% Similarity=0.152 Sum_probs=185.4
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
......+...||.-|...|++..|...++++++..+ ....++..++.+|...|+.+.|.+.|++|+.+.++
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DP---------s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDP---------SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 345567888999999999999999999999999863 45789999999999999999999999999999888
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ..++++.|..++.+|++++|...|++|+.. +..+..+.++.++|.|..+.|+++.|.++|++++++
T Consensus 102 ~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 N-------GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred c-------cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 7 678999999999999999999999999872 233445789999999999999999999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
+|+.......++......|++..|..++++.... -+-.++.+....++-...|+.+.+. .+-.
T Consensus 169 --------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~-~Y~~ 231 (250)
T COG3063 169 --------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQ-RYQA 231 (250)
T ss_pred --------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 8888899999999999999999999999987775 4466788888888999999998887 6666
Q ss_pred HHHhhhhhhhHH
Q 007930 560 NLLDSNAYRVKK 571 (584)
Q Consensus 560 ~~~~~~~~~~~~ 571 (584)
.+...-|.+...
T Consensus 232 qL~r~fP~s~e~ 243 (250)
T COG3063 232 QLQRLFPYSEEY 243 (250)
T ss_pred HHHHhCCCcHHH
Confidence 666666655443
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=5.9e-16 Score=129.73 Aligned_cols=277 Identities=16% Similarity=0.142 Sum_probs=226.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC--cchHHH
Q 007930 206 LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ--ENEVAA 283 (584)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~ 283 (584)
-|.-+.-..+.++|+..|..+++..+... .+...+|.+|...|+.+.|+..-+..+. .++ ......
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~--------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~----spdlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETF--------EAHLTLGNLFRSRGEVDRAIRIHQTLLE----SPDLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhh--------HHHHHHHHHHHhcchHHHHHHHHHHHhc----CCCCchHHHHH
Confidence 45566677899999999999988555443 4589999999999999999988764332 222 224466
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCCh
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAP 363 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 363 (584)
++..+|.-|+..|-++.|+..|....+. ......++..|..+|....++++|++..++..++..+ ...
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q----~~~ 176 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ----TYR 176 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc----cch
Confidence 7889999999999999999999987764 3455678889999999999999999999998887643 345
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
..++..++.++..+....+.+.|...+.+|++..++. ..+-..+|.++...|+|++|++.++.+++-
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c-------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------ 243 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKC-------VRASIILGRVELAKGDYQKAVEALERVLEQ------ 243 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-------eehhhhhhHHHHhccchHHHHHHHHHHHHh------
Confidence 6789999999999999999999999999999987776 445558999999999999999999999885
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 523 (584)
++...+.+...|..+|...|+.++....+.++.+. .+.. .+...++..-....-.+.|..++.+-+..
T Consensus 244 -n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--------~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 244 -NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--------NTGA-DAELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred -ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------cCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 56678899999999999999999999999999986 3332 45566777777777778888888877776
Q ss_pred HHhCCCChhHHHHH
Q 007930 524 EKLGTANPDIDDEK 537 (584)
Q Consensus 524 ~~~~~~~p~~~~~~ 537 (584)
+|...-.+
T Consensus 312 ------~Pt~~gf~ 319 (389)
T COG2956 312 ------KPTMRGFH 319 (389)
T ss_pred ------CCcHHHHH
Confidence 78764444
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.80 E-value=1.5e-16 Score=156.60 Aligned_cols=252 Identities=14% Similarity=0.011 Sum_probs=201.4
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc---------CChhHHHHHHHHHHHHHHHhhcCCcccHHHH
Q 007930 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL---------CRFDEAIFSYQKGLTVFKATRGEDHLSVASI 326 (584)
Q Consensus 256 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 326 (584)
+++++|+..|++++.. +|....++..+|.++... +++++|+..+++++++ .|....+
T Consensus 275 ~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a 340 (553)
T PRK12370 275 YSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQA 340 (553)
T ss_pred HHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHH
Confidence 5678999999999874 777788888999887644 3478999999999998 7888999
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST 406 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 406 (584)
+..+|.++...|++++|+..|++++++.. ....++..+|.++...|++++|+..+++++++.+...
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P---------~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----- 406 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSP---------ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----- 406 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence 99999999999999999999999999853 3467889999999999999999999999999876642
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
.....++.+++..|++++|+..+++++.. .++.....+..+|.++...|++++|...+.+....
T Consensus 407 --~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~------- 470 (553)
T PRK12370 407 --AAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ------- 470 (553)
T ss_pred --hhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence 23334566677899999999999998864 23344567889999999999999999999887665
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
.|........++..|...|+ +|...+++.++..... +.+ ...+..++.-.|+.+.+. .. +.+.+.
T Consensus 471 -~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~--~~~------~~~~~~~~~~~g~~~~~~-~~-~~~~~~ 535 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI--DNN------PGLLPLVLVAHGEAIAEK-MW-NKFKNE 535 (553)
T ss_pred -cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh--hcC------chHHHHHHHHHhhhHHHH-HH-HHhhcc
Confidence 67777788889999998884 8888888876654321 112 223788888888888887 33 555544
No 64
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=4.2e-16 Score=147.75 Aligned_cols=310 Identities=15% Similarity=0.091 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
......-|.+....|+++.|.+.+.++.+..+.. ...+...|.++..+|+++.|..++.++.+. .++..
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~--------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~ 152 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP--------VLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDN 152 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCc
Confidence 3444566788889999999999998876653321 233667899999999999999999987642 11211
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
..+....+.++...|++++|...+++.++. .|....++..++.++...|++++|.+.+.+..+...
T Consensus 153 --l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~---- 218 (409)
T TIGR00540 153 --ILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL---- 218 (409)
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC----
Confidence 223445699999999999999999999887 688889999999999999999999999998887631
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
.+.............-+...+..+++.+.+.++....+.. ......++..++..+...|++++|...++++++...
T Consensus 219 -~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~---~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p 294 (409)
T TIGR00540 219 -FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH---RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG 294 (409)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH---HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence 1222222222222222234455555556666666554422 112256677899999999999999999999998522
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL--GVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
. +.... ............++.+.+++.++++++. +|+.+ ..+..+|.++.+.|++++|.++|++
T Consensus 295 d-----~~~~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 295 D-----DRAIS-LPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred C-----cccch-hHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 1 11000 0122223334458889999999999988 77777 8889999999999999999999994
Q ss_pred --HHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 518 --ILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 518 --a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+++. +|+... +..+|.++.++|+.++|. ..++..+
T Consensus 361 a~a~~~--------~p~~~~-~~~La~ll~~~g~~~~A~-~~~~~~l 397 (409)
T TIGR00540 361 VAACKE--------QLDAND-LAMAADAFDQAGDKAEAA-AMRQDSL 397 (409)
T ss_pred hHHhhc--------CCCHHH-HHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence 6555 676655 559999999999999998 6665544
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=3.9e-16 Score=147.99 Aligned_cols=310 Identities=10% Similarity=-0.050 Sum_probs=227.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
....|......|+++.|.+.+.++.+. .|.....+...|.+....|+++.|..++.++.+..+...-
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l----- 153 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI----- 153 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch-----
Confidence 456678888999999999999887776 4555566677899999999999999999999865543321
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.+....+.++...|+++.|...+++..+. .|....++..++.++...|++++|.+.+.+..+.. . ..
T Consensus 154 --~~~~~~a~l~l~~~~~~~Al~~l~~l~~~------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~----~-~~ 220 (409)
T TIGR00540 154 --LVEIARTRILLAQNELHAARHGVDKLLEM------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG----L-FD 220 (409)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC----C-CC
Confidence 12344589999999999999999987663 56666788999999999999999999998877651 0 11
Q ss_pred ccHH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 321 LSVA-SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 321 ~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
+... ........-....+..+++.+.+.++...... ..+.....+..++..+...|++++|.+.++++++..++
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~-----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd 295 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR-----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD 295 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH-----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Confidence 2211 22222222223444555555566666654321 12234678888999999999999999999999998765
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH--HHHHHHHHHHHhhCCHHHHHHHHHH--
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG--IVLNQMGLACLQLYRINEATELFEE-- 475 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~-- 475 (584)
..... ............++.+++++.++++++. .|... ..+..+|.++...|++++|.++|++
T Consensus 296 ~~~~~-----~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 296 DRAIS-----LPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred cccch-----hHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 52110 0012233334457888888888888873 33445 7788999999999999999999994
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 007930 476 ARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 476 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 523 (584)
+++. +|+... +..+|.++.+.|+.++|.++|++++...-
T Consensus 363 a~~~--------~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 363 ACKE--------QLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred Hhhc--------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 6655 666644 66999999999999999999999988643
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=9.6e-16 Score=128.47 Aligned_cols=276 Identities=16% Similarity=0.194 Sum_probs=221.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchh
Q 007930 75 LKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA 154 (584)
Q Consensus 75 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 154 (584)
+-.|.-+.-..+ +++|++.|.+.++. ++...++...||..|.+.|+.+.|+...+..+... .-..
T Consensus 39 Yv~GlNfLLs~Q-~dKAvdlF~e~l~~---------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-----dlT~ 103 (389)
T COG2956 39 YVKGLNFLLSNQ-PDKAVDLFLEMLQE---------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-----DLTF 103 (389)
T ss_pred HHhHHHHHhhcC-cchHHHHHHHHHhc---------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-----CCch
Confidence 444555666666 89999999998873 66788999999999999999999999988765431 1111
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 155 LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 155 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
.....++..+|.-|...|-++.|...|....+. ......++..|..+|....+|++|++..++..++.+..
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~- 174 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT- 174 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-
Confidence 222356889999999999999999999888765 33455688899999999999999999998887765443
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 007930 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKA 314 (584)
Q Consensus 235 ~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 314 (584)
....++..|..++..+....+.+.|...+.+|+.. ++....+-..+|.+....|+|..|++.++.+++-
T Consensus 175 --~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--- 243 (389)
T COG2956 175 --YRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--- 243 (389)
T ss_pred --chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---
Confidence 56788899999999999999999999999999884 7777788889999999999999999999998886
Q ss_pred hhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 315 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
++.....+...|..+|..+|+.++.+.++.++.+.... ......++.+-....-.+.|..++.+-+
T Consensus 244 ----n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 244 ----NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----------ADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred ----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC----------ccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 45567788899999999999999999999999887643 2344455666666666777877777666
Q ss_pred HHHHh
Q 007930 395 KLLED 399 (584)
Q Consensus 395 ~~~~~ 399 (584)
...|+
T Consensus 310 ~r~Pt 314 (389)
T COG2956 310 RRKPT 314 (389)
T ss_pred hhCCc
Confidence 55443
No 67
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=2.7e-15 Score=137.47 Aligned_cols=372 Identities=17% Similarity=0.062 Sum_probs=254.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
+....+.-..++.-+..+...+. ++-|+..|..+++.+.. .-..+...+..--.-|..++-..++++++.
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~-~~carAVya~alqvfp~---------k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPA-IECARAVYAHALQVFPC---------KKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhccc---------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 44455556666777777777777 77777777777776432 222333444444556677777777777776
Q ss_pred HHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 007930 144 VVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLC 223 (584)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (584)
.+++ .+ ..++..+..+...|+...|...+.++++. +|..-+++..--.+.....+++.|..+|
T Consensus 579 ~~pk-----ae----~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 579 QCPK-----AE----ILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred hCCc-----ch----hHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 6532 21 12556666777778888887777777776 5666666666666777777788887777
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHH
Q 007930 224 KKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIF 303 (584)
Q Consensus 224 ~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 303 (584)
.++....+ ...+|+.-+.+...+++.++|+.+++++++. .|.....+..+|.++..+++.+.|..
T Consensus 642 akar~~sg---------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 642 AKARSISG---------TERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred HHHhccCC---------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 77765322 1245667777777777888888887777764 56677777778888888888888887
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCH
Q 007930 304 SYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH 383 (584)
Q Consensus 304 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 383 (584)
.|...+.. .|.....+..++.+-...|+...|...++++.-.. |.....|......-.+.|+.
T Consensus 707 aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN---------Pk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 707 AYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN---------PKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC---------CCcchhHHHHHHHHHHcCCH
Confidence 77777766 56677777777777777777777777777765442 22345666666667777888
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh
Q 007930 384 EEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL 463 (584)
Q Consensus 384 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (584)
+.|.....+|++-++.. | ..+..-..+.-.-++-.+++..++++- + ...++..+|.++...
T Consensus 770 ~~a~~lmakALQecp~s-g------~LWaEaI~le~~~~rkTks~DALkkce---------~---dphVllaia~lfw~e 830 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSS-G------LLWAEAIWLEPRPQRKTKSIDALKKCE---------H---DPHVLLAIAKLFWSE 830 (913)
T ss_pred HHHHHHHHHHHHhCCcc-c------hhHHHHHHhccCcccchHHHHHHHhcc---------C---CchhHHHHHHHHHHH
Confidence 88888888887777665 1 111111111112223223333222221 1 236788899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 464 YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 464 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++++|.+.|.++++. .|+..+++..+-..+...|.-++-.+.+.++...
T Consensus 831 ~k~~kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 9999999999999999 8899999999999999999999999898888775
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.1e-13 Score=125.86 Aligned_cols=435 Identities=13% Similarity=0.110 Sum_probs=275.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..++..-..+...|+ |++|+....+.+.. .|+...++..--.+..+.++|++|+...+.-....
T Consensus 13 ~~l~t~ln~~~~~~e-~e~a~k~~~Kil~~---------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~------ 76 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGE-YEEAVKTANKILSI---------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL------ 76 (652)
T ss_pred HHHHHHHHHhccchH-HHHHHHHHHHHHhc---------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh------
Confidence 566666677778888 99999988888875 23345566677778889999999996555422111
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHR 231 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 231 (584)
... ...+.-+.|.++++..++|+..++-+ ++....++...|.+++++|+|++|...|+...+...
T Consensus 77 --~~~--~~~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 77 --VIN--SFFFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred --hcc--hhhHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 000 11368899999999999999888721 233345677789999999999999999998876433
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007930 232 EHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE-NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLT 310 (584)
Q Consensus 232 ~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 310 (584)
...+. -...+.++..-...++ ........ ......+++.+.++...|+|.+|++.+++++.
T Consensus 142 dd~d~-----~~r~nl~a~~a~l~~~-------------~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 142 DDQDE-----ERRANLLAVAAALQVQ-------------LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred chHHH-----HHHHHHHHHHHhhhHH-------------HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22211 0111111111111111 11222222 33667889999999999999999999999999
Q ss_pred HHHHhhcCCc-------ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCH
Q 007930 311 VFKATRGEDH-------LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH 383 (584)
Q Consensus 311 ~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 383 (584)
++++....++ .....+...++.++..+|+..+|...|...+.... .+.+..+.+-++|-.+-....-+
T Consensus 204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-----~D~~~~Av~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-----ADEPSLAVAVNNLVALSKDQNYF 278 (652)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-----CCchHHHHHhcchhhhccccccC
Confidence 9877654332 23456778899999999999999999999887642 23334444444443221111111
Q ss_pred H---------------------------HHHH-----------HHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHhccH
Q 007930 384 E---------------------------EALK-----------LLQKAMKLLEDTPGYHST-IAGIEAQMGVMLYVVGRY 424 (584)
Q Consensus 384 ~---------------------------~A~~-----------~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 424 (584)
+ +++. -..++.++....++..+. ...++. ..........+
T Consensus 279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll-~~~t~~~~~~~ 357 (652)
T KOG2376|consen 279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILL-QEATKVREKKH 357 (652)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHH-HHHHHHHHHHH
Confidence 1 0000 001112222222222211 112211 11122222244
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 007930 425 GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA 504 (584)
Q Consensus 425 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 504 (584)
.+|.+++....+ .++.....+...++.+...+|+++.|++.+...+......... -...+.+-..+-..+.+
T Consensus 358 ~ka~e~L~~~~~-------~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 358 KKAIELLLQFAD-------GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPGTVGAIVALYYK 429 (652)
T ss_pred hhhHHHHHHHhc-------cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChhHHHHHHHHHHh
Confidence 555555444433 2333346678888999999999999999999666443333221 12223344556667888
Q ss_pred cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 505 LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 505 ~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.++.+.|...+.+|+..++..... .+.....+..++.+-.+.|+-++|. ..++.++..+|+....
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~-s~leel~k~n~~d~~~ 494 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTG-SIALLSLMREAAEFKLRHGNEEEAS-SLLEELVKFNPNDTDL 494 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhccc-chHHHhHHHHHhHHHHhcCchHHHH-HHHHHHHHhCCchHHH
Confidence 888888999999999988776554 3666677788889989999999999 9999999877776554
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=1.6e-16 Score=156.29 Aligned_cols=249 Identities=11% Similarity=-0.017 Sum_probs=196.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhc---------CChhhHHHHHHHHHHHHHhccCCchhhhHH
Q 007930 88 PNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSL---------GRFEEAVPVLERSIEVVDIGKGSDRALAKF 158 (584)
Q Consensus 88 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (584)
+++|+.++++|+++ +|..+.++..+|.+|... +++++|+..+++++++. ++++
T Consensus 277 ~~~A~~~~~~Al~l---------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-----P~~~---- 338 (553)
T PRK12370 277 LQQALKLLTQCVNM---------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-----HNNP---- 338 (553)
T ss_pred HHHHHHHHHHHHhc---------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-----CCCH----
Confidence 56888888888875 455677888888887644 34889999999999875 4444
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.++..+|.++...|++++|+..|++++++ +|....+++.+|.++...|++++|+..+++++++.|....
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~--- 407 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA--- 407 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh---
Confidence 34788999999999999999999999999 7888899999999999999999999999999998775431
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
.+..++.++...|++++|+..+++++.. ..+.....+..+|.++...|++++|...+.+....
T Consensus 408 -----~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~------- 470 (553)
T PRK12370 408 -----AGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ------- 470 (553)
T ss_pred -----hHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-------
Confidence 2344566677789999999999987653 23555667889999999999999999999886554
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 395 (584)
.+........++..|...|+ +|...+++.++..... . .....+..++.-.|+.+.+..+ +++.+
T Consensus 471 -~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~---~------~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI---D------NNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred -cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh---h------cCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 56777788888999888884 8888888877665431 1 1122377788888888877766 55443
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=1.9e-16 Score=140.14 Aligned_cols=205 Identities=20% Similarity=0.206 Sum_probs=174.5
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.......+..+|.++...|++++|+..+++++.... ....++..+|.++...|++++|+++++++++..+.
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP---------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455678899999999999999999999999987742 23578889999999999999999999999987554
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ...+..+|.++...|++++|+..+++++.... .+.....+..+|.++...|++++|..++.+++..
T Consensus 98 ~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 98 N-------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 45777899999999999999999999987311 1223567888999999999999999999999998
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
.|....++..+|.++...|++++|..++++++.. .|.....+..++.++...|+.++|. ...+
T Consensus 165 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~ 227 (234)
T TIGR02521 165 --------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQ-RYGA 227 (234)
T ss_pred --------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence 6677788999999999999999999999999987 4556677778999999999999998 5555
Q ss_pred HHHh
Q 007930 560 NLLD 563 (584)
Q Consensus 560 ~~~~ 563 (584)
.+..
T Consensus 228 ~~~~ 231 (234)
T TIGR02521 228 QLQK 231 (234)
T ss_pred HHHh
Confidence 5543
No 71
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1e-16 Score=138.67 Aligned_cols=289 Identities=15% Similarity=0.096 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.-....|..++...+|.+|+..|..|+++ .|+.+..|.+.+.+++..|+|++|....++.+++.+....
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k--- 118 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK--- 118 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc---
Confidence 44667888899999999999999999999 6777999999999999999999999999999887765543
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH------------HHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLAS------------MVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (584)
.+...+.++...++..+|.+.++..- .+.......|........-+.++...|++++|...--
T Consensus 119 -----~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 119 -----GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred -----cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 25567777777777777776665211 0000111123333333444555555555555555554
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHH
Q 007930 307 KGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEA 386 (584)
Q Consensus 307 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 386 (584)
..+++ ++....++..-|.++...++.+.|+.+|++++.+.+. +.....++
T Consensus 194 ~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpd------h~~sk~~~---------------- 243 (486)
T KOG0550|consen 194 DILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPD------HQKSKSAS---------------- 243 (486)
T ss_pred HHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChh------hhhHHhHh----------------
Confidence 44444 4455555555555555555555555555555554322 11100000
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH
Q 007930 387 LKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (584)
..+.....+..-|.-.++.|++.+|.+.|..++.+-.. +....+.+|.+++.+....|+.
T Consensus 244 ----------------~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 244 ----------------MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred ----------------hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCc
Confidence 00111223334455666666666666666666664222 2333456666667677777777
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+|+.-...++++ ++....++...|.|+..+++|++|.+.|+++++.
T Consensus 304 ~eaisdc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 304 REAISDCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777766 6666667777777777777777777777777665
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=2.1e-16 Score=126.28 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=162.0
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
.....+...+|.-|+..|++..|...++++++. +|....++..++.+|...|+.+.|.+.|++++.+..+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-- 101 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-- 101 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--
Confidence 345667788888888889998898888888887 7888888888888898899999999999988888643
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
...++++.|..++.+|++++|...|++|+.. ........++.++|.|..+.|+++.|.++|+++++.
T Consensus 102 -------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~- 168 (250)
T COG3063 102 -------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD-----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL- 168 (250)
T ss_pred -------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC-----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-
Confidence 3678888888888889999998888888753 122233566778888889999999999999998885
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.+........++..++..|++..|..+++..... .+..++.+....++-...|+-+.|..+-.+.
T Consensus 169 -------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 169 -------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred -------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344567778888888889999988888877665 3456677777777888888888887777666
Q ss_pred HHH
Q 007930 519 LKV 521 (584)
Q Consensus 519 ~~~ 521 (584)
...
T Consensus 234 ~r~ 236 (250)
T COG3063 234 QRL 236 (250)
T ss_pred HHh
Confidence 655
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=1.4e-16 Score=143.42 Aligned_cols=247 Identities=16% Similarity=0.095 Sum_probs=178.7
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH
Q 007930 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY 335 (584)
Q Consensus 256 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 335 (584)
+..+.++..+.+++... .-++...+..++.+|.++...|++++|+..|++++++ .|....+++.+|.++.
T Consensus 40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence 45666777777655321 1234456788999999999999999999999999998 7888999999999999
Q ss_pred HcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007930 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415 (584)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 415 (584)
..|++++|+..|++++++.. ....++.++|.++...|++++|++.++++++..++.. .... ..
T Consensus 110 ~~g~~~~A~~~~~~Al~l~P---------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~---~~ 172 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLELDP---------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----YRAL---WL 172 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---HH
Confidence 99999999999999999853 2367889999999999999999999999998866541 1111 12
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHH
Q 007930 416 VMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVY 495 (584)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 495 (584)
.+....+++++|+..+.++.... .++. + ..+.+....|+..++ ..++.+.+..+... ...+...+++
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~~------~~~~----~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~ 239 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEKL------DKEQ----W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETY 239 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhhC------Cccc----c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHH
Confidence 23455788999999998766421 1111 1 134455556666544 23333332110000 0045567899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHhchH
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKVREEKLGTAN-PDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~ 550 (584)
+.+|.++...|++++|+.+|++++++ + |+..+..+.+.++....++.
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~--------~~~~~~e~~~~~~e~~~~~~~~ 287 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALAN--------NVYNFVEHRYALLELALLGQDQ 287 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999997 4 46666666666665554443
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=5.6e-16 Score=137.19 Aligned_cols=207 Identities=16% Similarity=0.117 Sum_probs=172.0
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
+.......+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++.....
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34556788899999999999999999999999876 5777888999999999999999999999999987532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
....+..+|.++...|++++|+.++++++.... .......+..+|.++...|++++|...+++++.
T Consensus 98 ---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 98 ---------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245788899999999999999999999986421 122245667889999999999999999999988
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHH
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILE 516 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 516 (584)
. .+.....+..+|.++...|++++|..++++++.. .+.....+..++.++...|+.++|..+.+
T Consensus 164 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 164 I--------DPQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred h--------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5 2223567889999999999999999999999887 45556777888999999999999998887
Q ss_pred HHHHH
Q 007930 517 YILKV 521 (584)
Q Consensus 517 ~a~~~ 521 (584)
.+...
T Consensus 228 ~~~~~ 232 (234)
T TIGR02521 228 QLQKL 232 (234)
T ss_pred HHHhh
Confidence 76654
No 75
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.76 E-value=8e-15 Score=140.74 Aligned_cols=410 Identities=16% Similarity=0.126 Sum_probs=253.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc------------------
Q 007930 88 PNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGK------------------ 149 (584)
Q Consensus 88 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------ 149 (584)
...|...+-+++++ ++..+.++..||.+|...-+...|..+|++|.++.....
T Consensus 474 ~~~al~ali~alrl---------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 474 SALALHALIRALRL---------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred HHHHHHHHHHHHhc---------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHH
Confidence 46666666666654 444566666666666666666666666666655531110
Q ss_pred ---------CCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 007930 150 ---------GSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220 (584)
Q Consensus 150 ---------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (584)
...........+..+|..|...+++..|+..|+.++.. +|....+|..+|.+|...|++..|+
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHH
Confidence 00011111234566888888999999999999999988 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc-CCcchHHHHHHHHHHHHHHcCChh
Q 007930 221 NLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN-GQENEVAAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~ 299 (584)
+.|.++..+.|... ...+..+.+....|+|.+|+..+...+...... .-....+.++..++..+...|-+.
T Consensus 617 KvF~kAs~LrP~s~--------y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ 688 (1238)
T KOG1127|consen 617 KVFTKASLLRPLSK--------YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQK 688 (1238)
T ss_pred HhhhhhHhcCcHhH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999998876554 347788899999999999999998776544322 224466778888888888889999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccH-----------------------------HHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL-----------------------------RESKSYCENA 350 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-----------------------------~~A~~~~~~a 350 (584)
+|..+++++++.+.-............+..+|......-.. --+.+++-..
T Consensus 689 kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 689 KAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 99999999988765543222122222233333222111110 0122222222
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEA--------LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG 422 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 422 (584)
+... .....|+++|..|.. +.+...|+.++.+++++..+. ...++.||.+ ...|
T Consensus 769 lsl~----------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann-------~~~WnaLGVl-sg~g 830 (1238)
T KOG1127|consen 769 LSLA----------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN-------EGLWNALGVL-SGIG 830 (1238)
T ss_pred HHHh----------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHh-hccc
Confidence 2222 124577888887766 233458999999999987765 2344444444 3345
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH----
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL---- 498 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 498 (584)
++.-|..+|-+++.. .|.....|.++|.++....+++-|...|.++..+ .|.....|...
T Consensus 831 nva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali~ 894 (1238)
T KOG1127|consen 831 NVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALIP 894 (1238)
T ss_pred hhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHhH
Confidence 555555555554442 2223344444554444444444444444444443 33332332222
Q ss_pred -----------------------------------HHHHHHcCChHHHHHHHHHHHH--HH-HHHhCCCChhHHHHHHHH
Q 007930 499 -----------------------------------AATYDALGRVEDAIEILEYILK--VR-EEKLGTANPDIDDEKERL 540 (584)
Q Consensus 499 -----------------------------------a~~~~~~g~~~~A~~~~~~a~~--~~-~~~~~~~~p~~~~~~~~l 540 (584)
-.....+|+.++-+...+++-. +. ...+ ..+|+...++...
T Consensus 895 eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf-~~~p~~~fAy~~~ 973 (1238)
T KOG1127|consen 895 EAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF-LGHPQLCFAYAAN 973 (1238)
T ss_pred HHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH-hcCcchhHHHHHH
Confidence 3333445555555544443321 11 1222 3489999999999
Q ss_pred HHHHHHhchHHHHHHHH
Q 007930 541 AELLKETGRARNRKGKS 557 (584)
Q Consensus 541 ~~~~~~~g~~~~A~~~~ 557 (584)
|.+...++.+++|.+..
T Consensus 974 gstlEhL~ey~~a~ela 990 (1238)
T KOG1127|consen 974 GSTLEHLEEYRAALELA 990 (1238)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 99999999999998533
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.76 E-value=2.8e-15 Score=141.26 Aligned_cols=334 Identities=12% Similarity=-0.012 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..+..+|.++...|+.+.+...+.++...... +....+.....+.++...|++++|...++++++..|...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---- 77 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL---- 77 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----
Confidence 34888999999999999998888888776432 334556677789999999999999999999998765432
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
.++.. +..+...|++..+.....+++.. ..+..+.....+..+|.++...|++++|+..++++++.
T Consensus 78 ----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------- 143 (355)
T cd05804 78 ----LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL------- 143 (355)
T ss_pred ----HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Confidence 12332 55555666555555555554433 34567777888889999999999999999999999998
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.|....++..+|.++...|++++|+.++++++..... ........+..++.++...|++++|+..+++++...+
T Consensus 144 -~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 144 -NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 5777888999999999999999999999999987532 1223345677899999999999999999999854332
Q ss_pred hCCCCcccHHHHHH--HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 399 DTPGYHSTIAGIEA--QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 399 ~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
. .......+. .+...+...|....+... +.+........+. ......-...+.++...|+.++|...++..
T Consensus 218 ~----~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 218 E----SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred C----CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1 111111100 222333334433322222 2222221111111 112233346788888999999999999988
Q ss_pred HHHHHHHh-CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 477 RGVLEQEC-GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 477 ~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
....+... .........+....+.++...|++++|...+..++.+...+.|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs 343 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS 343 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 77654410 00122345677788999999999999999999999998666664
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=8.6e-15 Score=137.98 Aligned_cols=301 Identities=15% Similarity=0.084 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
....+.-|......|++++|.+...+.-+ .. +.+ ...+...+......|+++.|..++.++.+. .+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~----~~--~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~ 149 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNAD----HA--EQP--VVNYLLAAEAAQQRGDEARANQHLERAAEL------AD 149 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHh----cc--cch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CC
Confidence 34445667777788999999966665433 22 112 122445566679999999999999998652 22
Q ss_pred hH-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 280 EV-AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 280 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
+. .......+.++...|++++|+..+++..+. .|....++..++.+|...|++++|++.+.+..+....
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-- 219 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-- 219 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC--
Confidence 22 223334589999999999999999999887 7888999999999999999999999999988776421
Q ss_pred CCCChHHHH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 359 PATAPEEIA----NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 359 ~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
+..... .++..+........+ .+.+.+..+..+.. .+....+...++..+...|+.++|...++++
T Consensus 220 ---~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 220 ---DEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 122222 122222222222222 22333333222221 1222556678999999999999999999999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
++. ++. .......+. ...++.+++++..++.++. +|+.+..+..+|.++...|++++|.++
T Consensus 290 l~~--------~~~-~~l~~l~~~--l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 290 LKR--------QYD-ERLVLLIPR--LKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred Hhc--------CCC-HHHHHHHhh--ccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 872 121 122222222 2459999999999999988 899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
|+++++. +|+.. .+..++.++.++|+.++|. .+++..+.
T Consensus 351 le~al~~--------~P~~~-~~~~La~~~~~~g~~~~A~-~~~~~~l~ 389 (398)
T PRK10747 351 FRAALKQ--------RPDAY-DYAWLADALDRLHKPEEAA-AMRRDGLM 389 (398)
T ss_pred HHHHHhc--------CCCHH-HHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 9999998 77764 4568999999999999998 66666553
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.75 E-value=1.6e-15 Score=142.87 Aligned_cols=339 Identities=14% Similarity=0.091 Sum_probs=235.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
+|+.+..+..+|..+...|+ ++.+...+.++...... +.+........+.++...|++++|...++++++..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGE-RPAAAAKAAAAAQALAA------RATERERAHVEALSAWIAGDLPKALALLEQLLDDY- 73 (355)
T ss_pred CCccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-
Confidence 68889999999999999998 89988888888776442 22345556678999999999999999999999874
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
+.+... +.. +..+...|++..+.....+++.. ..+.+|.....+..+|.++...|++++|+..++++
T Consensus 74 ----P~~~~a----~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 74 ----PRDLLA----LKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred ----CCcHHH----HHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223221 222 55555666555555555555543 23457788888889999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQ 306 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (584)
+++.|... ..+..+|.++...|++++|+.++++++..... ........+..+|.++...|++++|+..++
T Consensus 141 l~~~p~~~--------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 141 LELNPDDA--------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HhhCCCCc--------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99876543 45888999999999999999999998765322 122334567789999999999999999999
Q ss_pred HHHHHHHHhhcCCcccHHHHHH--HHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHH
Q 007930 307 KGLTVFKATRGEDHLSVASIFI--RLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384 (584)
Q Consensus 307 ~al~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 384 (584)
+++.... .......... .+...+...|....+..+ +.+.......... ..........+.++...|+.+
T Consensus 211 ~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 211 THIAPSA-----ESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD---HGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHhcccc-----CCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc---ccchHHHHHHHHHHhcCCCHH
Confidence 9854310 0111111101 222333334433333322 2222221110001 111222235788888999999
Q ss_pred HHHHHHHHHHHHHHhC--CCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 385 EALKLLQKAMKLLEDT--PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 385 ~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
+|...++......... .+.......+....+.++...|++++|...+..++.....+|+.+
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~ 344 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH 344 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 9999999887766551 122233455666789999999999999999999999988887754
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=2.1e-16 Score=143.12 Aligned_cols=269 Identities=16% Similarity=0.124 Sum_probs=205.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH
Q 007930 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS 325 (584)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 325 (584)
+..|..+.+.|+..+|.-.|+.++. .+|..+.+|..||.+....++-..|+..+++++++ +|....
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nle 354 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLE 354 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHH
Confidence 5678999999999999999999887 59999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC-CCCC-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPA-PATA-PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
++..||..|...|.-.+|..++.+=+....... .... ...... ...-......+..-.++|-.+....+..
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~--- 427 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLPTK--- 427 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCC---
Confidence 999999999999999999999998876542210 0000 000000 0000000111122233343433333221
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
.-..+...||.+|...|+|++|+.+|+.|+. ..|.....|+.||-.+....+.++|+..|.+|+++
T Consensus 428 --~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---- 493 (579)
T KOG1125|consen 428 --IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL---- 493 (579)
T ss_pred --CChhHHhhhHHHHhcchHHHHHHHHHHHHHh--------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc----
Confidence 1246777899999999999999999999998 45667899999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHHhchHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD--IDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A 553 (584)
.|....+.++||..+..+|.|++|.++|-.|+.+.++..+..... .-.++..|-.++...++.+-+
T Consensus 494 ----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 494 ----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 999999999999999999999999999999999977743321111 224555555666666666633
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.74 E-value=4.1e-16 Score=140.35 Aligned_cols=245 Identities=11% Similarity=-0.047 Sum_probs=174.9
Q ss_pred cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 007930 171 MGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMAL 250 (584)
Q Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~ 250 (584)
.+..+.++..+.+++.... .+++..+..++.+|.++...|++++|+..|++++++.|.. ..+++.+|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~--------~~a~~~lg~ 106 (296)
T PRK11189 39 TLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM--------ADAYNYLGI 106 (296)
T ss_pred chHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--------HHHHHHHHH
Confidence 3566778888888775421 1234568899999999999999999999999999986543 356999999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Q 007930 251 VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL 330 (584)
Q Consensus 251 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 330 (584)
++...|++++|+..|++++++ .|....++.++|.++...|++++|+..++++++. .|...... ..
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--------~P~~~~~~-~~ 171 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--------DPNDPYRA-LW 171 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHH-HH
Confidence 999999999999999999885 6777889999999999999999999999999987 34433211 11
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHH
Q 007930 331 ADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGI 410 (584)
Q Consensus 331 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 410 (584)
..+....+++++|+..+.+++..... + .+ ..+.++...|+..++ ..++.+.+.........+....+
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~~~~-------~----~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea 238 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEKLDK-------E----QW-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCET 238 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhhCCc-------c----cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHH
Confidence 22345578899999999887644211 1 11 124455556666443 23333332221111112234678
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ 462 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (584)
++.+|.++...|++++|+.+|++++.. .++......+.+..+...
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~-------~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALAN-------NVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999985 334445555444444433
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.74 E-value=1.2e-13 Score=126.97 Aligned_cols=381 Identities=13% Similarity=0.103 Sum_probs=274.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 118 LHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDP 197 (584)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (584)
++..+.-.+..++|...+...+..++-. ++|.. ++-..|..+..+|+-++|......++.. ++
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~-----~eHge----slAmkGL~L~~lg~~~ea~~~vr~glr~--------d~ 72 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKF-----PEHGE----SLAMKGLTLNCLGKKEEAYELVRLGLRN--------DL 72 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhC-----Cccch----hHHhccchhhcccchHHHHHHHHHHhcc--------Cc
Confidence 3444555567889999999999988743 44553 3667899999999999999999998876 77
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
....+|..+|.++....+|++|+++|+.|+.+.+++. .++..++.+..++++++.....-.+.++ .
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~--------qilrDlslLQ~QmRd~~~~~~tr~~LLq------l 138 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL--------QILRDLSLLQIQMRDYEGYLETRNQLLQ------L 138 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHHHHHhhhhHHHHHHHHHH------h
Confidence 7888999999999999999999999999999876554 4699999999999999988877666555 3
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
.+..-..|...+..+...|++..|....+...+...............+......+....|.+++|.+.+..--...
T Consensus 139 ~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--- 215 (700)
T KOG1156|consen 139 RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--- 215 (700)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH---
Confidence 66667788889999999999999999988877665422212223344555566777788888888877765543222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHH-HH--H----HHHHHh---------
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEA-QM--G----VMLYVV--------- 421 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~l--~----~~~~~~--------- 421 (584)
.+........+.++..++++++|...|...+...|++.........++. -. + .+|...
T Consensus 216 ------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 216 ------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred ------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 2234455667899999999999999999888877665332221111111 00 0 000000
Q ss_pred ----------c-cHH-----------------------------HHHHHHHHHHHHHHHc-CCC------------CCch
Q 007930 422 ----------G-RYG-----------------------------EARSSFESAVVKLRAS-GES------------KSAF 448 (584)
Q Consensus 422 ----------g-~~~-----------------------------~A~~~~~~a~~~~~~~-~~~------------~~~~ 448 (584)
| ++. +-...+++.+..+... .+. .+..
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 0 000 0011222222222221 111 2334
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
..++++.++.-+-..|+++.|..+...|+.. .|...+.+..-|+++...|+.++|..++.++.++
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el------- 434 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL------- 434 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------
Confidence 6678888999999999999999999999987 8999999999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 529 ANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+-.+.-.-..-|.-..+..+.++|.
T Consensus 435 -D~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 435 -DTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred -cchhHHHHHHHHHHHHHccccHHHH
Confidence 3333333335677778888888887
No 82
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=8.4e-15 Score=138.06 Aligned_cols=300 Identities=10% Similarity=-0.012 Sum_probs=212.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
.+.-|......|++++|.+...++-+. .+.-...+...+......|+++.|..++.++.+..++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~--------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~------ 152 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADH--------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ------ 152 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc--------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch------
Confidence 455677777789999999766654333 111122344446666999999999999999987554332
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.+ .....+.++...|++++|+..+++..+ ..|....++..++.+|...|++++|+..+.+..+.... .
T Consensus 153 ~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~------~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-----~ 220 (398)
T PRK10747 153 LP-VEITRVRIQLARNENHAARHGVDKLLE------VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-----D 220 (398)
T ss_pred HH-HHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC-----C
Confidence 11 123448899999999999999998766 36777788899999999999999999999887765110 1
Q ss_pred ccHH-----HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007930 321 LSVA-----SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395 (584)
Q Consensus 321 ~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 395 (584)
+... .++..+........+ .+.+.+..+... ...+........++..+...|+.++|...++++++
T Consensus 221 ~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp-----~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 221 EEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQS-----RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCC-----HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1111 122222221112222 223333332221 11234467888899999999999999999999887
Q ss_pred HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 007930 396 LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEE 475 (584)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (584)
. +. ++.... .......++.+++++.+++.++. +|..+..+..+|.++...+++++|.++|++
T Consensus 292 ~-~~----~~~l~~-----l~~~l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 292 R-QY----DERLVL-----LIPRLKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred c-CC----CHHHHH-----HHhhccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3 11 121111 12223458999999999988873 555678899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 476 ARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 476 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+++. .|+. ..+..++.++.++|+.++|..+|++++.+.
T Consensus 354 al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 354 ALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9998 7776 456789999999999999999999998864
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.72 E-value=3.8e-14 Score=136.22 Aligned_cols=374 Identities=12% Similarity=0.086 Sum_probs=258.2
Q ss_pred cCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 007930 128 LGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLA 207 (584)
Q Consensus 128 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 207 (584)
..+...|...|-+++.+... . ..++..+|.+|....+...|...|.+|.++ ++..+.+....+
T Consensus 471 rK~~~~al~ali~alrld~~-----~----apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~a 533 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVS-----L----APAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASA 533 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccc-----h----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHH
Confidence 34467777888887776421 1 134888999999999999999999999999 888999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 208 EAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
..|....+++.|....-.+-+..+... ....|...|..|...+++..|+..|+.+++. +|.....+..
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a~~------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~------dPkD~n~W~g 601 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPAFA------CKENWVQRGPYYLEAHNLHGAVCEFQSALRT------DPKDYNLWLG 601 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchHHH------HHhhhhhccccccCccchhhHHHHHHHHhcC------CchhHHHHHH
Confidence 999999999999988555544433222 1233666999999999999999999999884 8888999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 007930 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367 (584)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 367 (584)
+|.+|...|++..|++.|.++..+ .|......+..+.+....|+|.+|+..+...+...... .......+
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e--~~~q~gLa 671 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE--RTGQNGLA 671 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHhhhhHH
Confidence 999999999999999999999988 78888899999999999999999999999988765432 11223457
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHHHHHHHh-----------------------cc
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH-STIAGIEAQMGVMLYVV-----------------------GR 423 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-----------------------g~ 423 (584)
.++..++..+...|-...|..+++++++.+....... ......+..+|.++.-. +.
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 7788888888888888888888888887664432211 11111111222211111 00
Q ss_pred H------HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh--------hCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 424 Y------GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ--------LYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 424 ~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
. --+.+++-..+... ..+..|+++|.-|.. +.+...|+.++++++++. .
T Consensus 752 l~~~d~l~Lg~~c~~~hlsl~---------~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--------a 814 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLSLA---------IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--------A 814 (1238)
T ss_pred CcchhHHHHHHHHhhHHHHHh---------hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--------h
Confidence 0 11222222222221 114568888887775 234458999999999983 3
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+....|..||.+ ...|++.-|..+|-+.+.. .|...-.|.|+|.++....+++-|. ..+..+....|.
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s--------ep~~~~~W~NlgvL~l~n~d~E~A~-~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--------EPTCHCQWLNLGVLVLENQDFEHAE-PAFSSVQSLDPL 882 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--------cccchhheeccceeEEecccHHHhh-HHHHhhhhcCch
Confidence 334455555555 4445666666666666555 4555555566666665555555555 444444444443
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.5e-13 Score=116.88 Aligned_cols=412 Identities=17% Similarity=0.079 Sum_probs=254.0
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHH
Q 007930 81 TISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSG 160 (584)
Q Consensus 81 ~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (584)
+....+ |..|+.+++-.+..- ..+....-..+|.|++.+|+|++|+..|.-+.+. . ++.. ..
T Consensus 32 fls~rD-ytGAislLefk~~~~--------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~-~~~~--el 93 (557)
T KOG3785|consen 32 FLSNRD-YTGAISLLEFKLNLD--------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------D-DAPA--EL 93 (557)
T ss_pred HHhccc-chhHHHHHHHhhccc--------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------C-CCCc--cc
Confidence 445556 999999998887541 2222344557899999999999999999887652 1 1111 34
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH----------HHHHhCCC---------ChHHHHHHHHHHHHHHHhCCHHHHHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEI----------QIEALGDS---------DPRVAETCRYLAEAHIQAMQFDEAEN 221 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~ 221 (584)
..+++.|++.+|.|.+|...-.++-+. ..+. ++. -.+..+-...||.+++..-.|.+|+.
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAId 172 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAID 172 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 788999999999999999877665221 1111 000 01122334456667777777888888
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc--CChh
Q 007930 222 LCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL--CRFD 299 (584)
Q Consensus 222 ~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~ 299 (584)
.|.+++.-.++.. ..-..++.+|.++.-++-+.+.+.--++ . .|+...+.+..+...++. |+..
T Consensus 173 vYkrvL~dn~ey~--------alNVy~ALCyyKlDYydvsqevl~vYL~---q---~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 173 VYKRVLQDNPEYI--------ALNVYMALCYYKLDYYDVSQEVLKVYLR---Q---FPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHHHhcChhhh--------hhHHHHHHHHHhcchhhhHHHHHHHHHH---h---CCCcHHHHHHHHHHHhhhhccchh
Confidence 8888876444332 3355678888888888887777664443 2 333333333333333322 2222
Q ss_pred HHH----------------HHHHH----------HHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 007930 300 EAI----------------FSYQK----------GLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353 (584)
Q Consensus 300 ~A~----------------~~~~~----------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 353 (584)
+++ ..++. +++.... --...+.+..++...|..+++..+|...++..
T Consensus 239 e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~----L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl--- 311 (557)
T KOG3785|consen 239 EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS----LMKHIPEARLNLIIYYLNQNDVQEAISLCKDL--- 311 (557)
T ss_pred HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH----HHhhChHhhhhheeeecccccHHHHHHHHhhc---
Confidence 211 11110 1111000 01234567778888888999988887765542
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC--cccHHHHHHHHHHHHHHhccHHHHHHHH
Q 007930 354 CAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY--HSTIAGIEAQMGVMLYVVGRYGEARSSF 431 (584)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (584)
.|....-+...|.++...|+--...++++-|.+.+.-..+. ..+...-...++.+++-..++++.+.++
T Consensus 312 ---------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 312 ---------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred ---------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 12234556677888888887766666666665554433111 1111122345778888888999999888
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHH
Q 007930 432 ESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDA 511 (584)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 511 (584)
...-..+.. .....+++++++...|++.+|.+.|-+.-. ++-.+.......||+||...++++-|
T Consensus 383 nSi~sYF~N--------dD~Fn~N~AQAk~atgny~eaEelf~~is~-------~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 383 NSIESYFTN--------DDDFNLNLAQAKLATGNYVEAEELFIRISG-------PEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHhcC--------cchhhhHHHHHHHHhcChHHHHHHHhhhcC-------hhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 776554321 124577899999999999999988865432 22334445677899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 512 IEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
...+-+.-. ..+....+..++......+.+==|. +.+..+-..+|
T Consensus 448 W~~~lk~~t---------~~e~fsLLqlIAn~CYk~~eFyyaa-KAFd~lE~lDP 492 (557)
T KOG3785|consen 448 WDMMLKTNT---------PSERFSLLQLIANDCYKANEFYYAA-KAFDELEILDP 492 (557)
T ss_pred HHHHHhcCC---------chhHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHccCC
Confidence 887755322 2333445556677777777766555 45554444444
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=6.9e-16 Score=139.82 Aligned_cols=268 Identities=16% Similarity=0.125 Sum_probs=195.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
..|..+++.|+..+|.-.|+.++... +.+. .+|..||.+....++-..|+..+++|+++ +|..
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd-----P~ha----eAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD-----PQHA----EAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-----hHHH----HHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 56888899999999999999988654 2232 56999999999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
..++..||..|...|.-.+|..++.+-+...+.......... .-......-......+..-.+.|-.+.. ..+ ..
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLeaa~---~~~-~~ 427 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEAAR---QLP-TK 427 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc-cccccCCcCCCCHHHHHHHHHHHHHHHH---hCC-CC
Confidence 999999999999999999999999888776543221000000 0000000000000111222223332222 222 12
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
....+...||.+|...|+|++|+.+|+.|+.. .|.....|+.||-.+..-.+.++|+..|.+|+++.
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq----- 494 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ----- 494 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-----
Confidence 45678889999999999999999999999998 89999999999999999999999999999999996
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc---HHHHHHHHHHHHHHhccHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST---IAGIEAQMGVMLYVVGRYGE 426 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 426 (584)
|..+++.++||..++.+|.|++|.++|-.|+.+.+...+.... --.++..|-.++...++.+-
T Consensus 495 ----P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 495 ----PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred ----CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 5568999999999999999999999999999998875332111 12233344455555555543
No 86
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.4e-12 Score=111.87 Aligned_cols=429 Identities=11% Similarity=0.093 Sum_probs=297.4
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHH
Q 007930 81 TISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSG 160 (584)
Q Consensus 81 ~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (584)
+.+-++ +++...-+++|-+++++..+.+ ......+...+.+-++......|..++++|+.+.+... ..
T Consensus 76 WikYaq-wEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd---------ql 143 (677)
T KOG1915|consen 76 WIKYAQ-WEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD---------QL 143 (677)
T ss_pred HHHHHH-HHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH---------HH
Confidence 333344 4444444444444444443222 22455667788888999999999999999998874321 23
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
++....+-..+|+..-|.+.|++-++. .|+ ..++......-.+..+.+.|...|++-+-..|+.
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~w--------~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v------- 207 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWMEW--------EPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKV------- 207 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHcC--------CCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccH-------
Confidence 555566667789999999999999887 443 2455556666677788899999999887655433
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
..+...+..-...|+..-|...|++|+..+. ++......+...|..-..+..++.|.-.|+-+++...+
T Consensus 208 --~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk------ 276 (677)
T KOG1915|consen 208 --SNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK------ 276 (677)
T ss_pred --HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------
Confidence 3477888888899999999999999887543 45555566667777777888899999999988886321
Q ss_pred ccHHHHHHHHHHHHHHcccH---HHHHHH-----HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 007930 321 LSVASIFIRLADLYYRIGKL---RESKSY-----CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQK 392 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~---~~A~~~-----~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 392 (584)
...-..+......--+-|+. ++++.. |++.+.. +|....+|...-.+-...|+.+.-.+.|++
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~---------np~nYDsWfdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK---------NPYNYDSWFDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh---------CCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11122333333333334443 333322 2222221 233456777777788888999999999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHH
Q 007930 393 AMKLLEDTPGYHSTIAGIEAQMGVML---YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEA 469 (584)
Q Consensus 393 a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (584)
|+...+.......-.-.+|..+-.++ ....+.+.+.+.|+.++++... .....+.+|...|.....+.+...|
T Consensus 348 AIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH----kkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 348 AIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH----KKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc----ccchHHHHHHHHHHHHHHHcccHHH
Confidence 99876554222221122333333332 4567899999999999986432 4556788899899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 470 TELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 470 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
.+.+-.|+.. .|.. ........+-.++++++....+|++-++. .|++..++...|.+-..+|+
T Consensus 424 RkiLG~AIG~--------cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 424 RKILGNAIGK--------CPKD-KLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHhcc--------CCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhh
Confidence 9999999887 4432 45555666677888999999999998887 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHhHhhc
Q 007930 550 ARNRKGKSLENLLDSNAYRVKKEVTKRRSG 579 (584)
Q Consensus 550 ~~~A~~~~l~~~~~~~~~~~~~~~~~~~~~ 579 (584)
.+.|. ..++.+++.+.-....-+.++|-.
T Consensus 487 tdRaR-aifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 487 TDRAR-AIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred HHHHH-HHHHHHhcCcccccHHHHHHHhhh
Confidence 99998 888888876665555555555543
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=7.6e-11 Score=107.77 Aligned_cols=436 Identities=14% Similarity=0.072 Sum_probs=271.2
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
..|+...++.....++.+.++ |++|+...+.-... .......+..+.|.++++..++|+..++- ++
T Consensus 41 ~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~~----------~~~~~~~fEKAYc~Yrlnk~Dealk~~~~-~~-- 106 (652)
T KOG2376|consen 41 IVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGAL----------LVINSFFFEKAYCEYRLNKLDEALKTLKG-LD-- 106 (652)
T ss_pred cCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcchh----------hhcchhhHHHHHHHHHcccHHHHHHHHhc-cc--
Confidence 447777777778888888888 88877444332211 00111125788999999999999999882 11
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-----------------------HHHhCCCChHHHHH
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ-----------------------IEALGDSDPRVAET 202 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~~~~~ 202 (584)
..+. ..+...|.+++++|+|++|...|+..++-. .+..........+.
T Consensus 107 -----~~~~----~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 107 -----RLDD----KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYEL 177 (652)
T ss_pred -----ccch----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHH
Confidence 1111 236678999999999999999998874321 01111112235678
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 203 CRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA-------SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
+++.+.++...|+|.+|++.++++++++.+..... ......+...++.++..+|+..+|...|...+.. ..
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~--~~ 255 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR--NP 255 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cC
Confidence 89999999999999999999999988877643211 2235667888999999999999999999876542 33
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHH----HHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDE-AIFSYQKGLTV----FKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
.+.+..+.+-+++-.+-....-++. ++..++..... ..... .+.....++.+.+.+.+..+.-+.+.+....
T Consensus 256 ~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L--s~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~- 332 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL--SKKQKQAIYRNNALLALFTNKMDQVRELSAS- 332 (652)
T ss_pred CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-
Confidence 4455556565665544333322221 11111111100 00000 0122333445555555555554444433222
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
+ ++..+.....++..-+ .......+.+|.+++...-+-.+ .....+...++.+...+|+++.|++.
T Consensus 333 --l-----p~~~p~~~~~~ll~~~-t~~~~~~~~ka~e~L~~~~~~~p------~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 333 --L-----PGMSPESLFPILLQEA-TKVREKKHKKAIELLLQFADGHP------EKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred --C-----CccCchHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhccCC------chhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1 1222233333333222 22222356677776665443322 22245666788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
+...+.......... ...+.+-..+-..+...++.+.|...+.+|+..++..... .+.....+..++..-.+.|+-++
T Consensus 399 l~~~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG-SIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc-chHHHhHHHHHhHHHHhcCchHH
Confidence 996553322211110 0112333445556777788888999999999987765443 34555667777888888899999
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 511 AIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 511 A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
|...+++.++. +|...+++..+...|... +.+.|.
T Consensus 477 a~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 477 ASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred HHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 99999999998 788889998888887755 444444
No 88
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.2e-10 Score=103.85 Aligned_cols=451 Identities=14% Similarity=0.046 Sum_probs=294.7
Q ss_pred cHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHH
Q 007930 70 LGPFLLKLARETISSG--DNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYC-SLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~ 146 (584)
.+..++.+|..+...| + ..+++.+++..... ..+..-.+.+...+|.+++ ...+++.|...++++..+.+
T Consensus 6 va~aLlGlAe~~rt~~PPk-Ikk~IkClqA~~~~------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~ 78 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPK-IKKCIKCLQAIFQF------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISK 78 (629)
T ss_pred HHHHHHHHHHHHhhcCChh-HHHHHHHHHHHhcc------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 4567889999888888 6 77788777766654 2234445677778887765 47899999999999998876
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMG-LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
....- ....+.+...++.+|.... .+..+...+++++++.+.. .-.....++.|+.++.-..++..|++.+.-
T Consensus 79 ~ip~f--ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~----p~wsckllfQLaql~~idkD~~sA~elLav 152 (629)
T KOG2300|consen 79 SIPSF--YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV----PYWSCKLLFQLAQLHIIDKDFPSALELLAV 152 (629)
T ss_pred ccccH--HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHhhhccchhHHHHHhc
Confidence 55332 2445567888999998877 8999999999999996543 234456788899999999999988877432
Q ss_pred HHHHHHHhC------------------CCCCHHHHHHHHHHHH-------------------------HHHHhccHHHHH
Q 007930 226 ILEIHREHG------------------HSASLEEAADRRLMAL-------------------------VYEAKADYESAL 262 (584)
Q Consensus 226 al~~~~~~~------------------~~~~~~~a~~~~~l~~-------------------------~~~~~g~~~~A~ 262 (584)
..+...... ..+..++-.+....|. .|...|+...+.
T Consensus 153 ga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k 232 (629)
T KOG2300|consen 153 GAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVK 232 (629)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhH
Confidence 211111000 0000111111111111 122234443333
Q ss_pred HHHHHHHHHHHHcCC------------cc-h--------HHHHHHHHHH--HHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 263 EHLVLASMVMIANGQ------------EN-E--------VAAIDVSIGN--IYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 263 ~~~~~a~~~~~~~~~------------~~-~--------~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
..+++.-........ ++ . ...++..+-. --...|-+++|.++-++++...++....+
T Consensus 233 ~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d 312 (629)
T KOG2300|consen 233 PALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQAD 312 (629)
T ss_pred HHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccccc
Confidence 333322111111100 00 0 1111111111 11345778899999999888766655333
Q ss_pred c------ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 007930 320 H------LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA--TAPEEIANGLTEISAIYEALNEHEEALKLLQ 391 (584)
Q Consensus 320 ~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 391 (584)
- ......+..+..+-.-.|++.+|++....+.+.+.+. ++ --....+.+.+.+|.....-+.++.|...|.
T Consensus 313 ~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~-p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~ 391 (629)
T KOG2300|consen 313 LMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF-PTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFI 391 (629)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-CchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHH
Confidence 1 1122344566777778999999999999999887663 11 1122346677778888888899999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC-C-----chHHHHHHHHHHHHHhhCC
Q 007930 392 KAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK-S-----AFFGIVLNQMGLACLQLYR 465 (584)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~-----~~~~~~~~~l~~~~~~~g~ 465 (584)
.|.+..... ...+.+..++|..|...|+-+.-.+ +++. ++..+ . ...+.+++..|...+.+++
T Consensus 392 ~a~k~t~~~----dl~a~~nlnlAi~YL~~~~~ed~y~----~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~ 460 (629)
T KOG2300|consen 392 EATKLTESI----DLQAFCNLNLAISYLRIGDAEDLYK----ALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQND 460 (629)
T ss_pred HHHHhhhHH----HHHHHHHHhHHHHHHHhccHHHHHH----HHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 998875443 2346667789999999887544333 2322 22221 1 1234567777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
+.||...+.+.+++..... .+.-.+..+..|+.+....|+..++.+..+-++++.+++.+ +|-.......+-.++.
T Consensus 461 lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D--i~vqLws~si~~~L~~ 536 (629)
T KOG2300|consen 461 LNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD--IPVQLWSSSILTDLYQ 536 (629)
T ss_pred HHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC--chHHHHHHHHHHHHHH
Confidence 9999999999999852221 13345567788899999999999999999999999887644 7777788888888999
Q ss_pred Hhch
Q 007930 546 ETGR 549 (584)
Q Consensus 546 ~~g~ 549 (584)
..|+
T Consensus 537 a~g~ 540 (629)
T KOG2300|consen 537 ALGE 540 (629)
T ss_pred HhCc
Confidence 9988
No 89
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.2e-14 Score=124.55 Aligned_cols=292 Identities=17% Similarity=0.114 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.+.-....|..+....+|.+|+..+..|+.. .|+.+..|.+.+.+++..|+|++|....++.+++ .
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--------k 113 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDM------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--------K 113 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHh------CccchhhhchhHHHHHHHHhHhhcccchhhheec--------C
Confidence 3444566778888899999999999999886 5556888999999999999999999999998887 5
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHH--------HHHhcCCC-CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENAL--------RVCAKPAP-ATAPEEIANGLTEISAIYEALNEHEEALKLLQ 391 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 391 (584)
+.........+.++...++..+|.+.++..- ...+...+ ....|........-+.++...|++++|...--
T Consensus 114 d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 114 DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 6677778888888888888888876665221 11111111 11224445566667889999999999988777
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC----CCchHHHHHHHHHHHHHhhCCHH
Q 007930 392 KAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES----KSAFFGIVLNQMGLACLQLYRIN 467 (584)
Q Consensus 392 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~ 467 (584)
..+++.... ...+...|.++...++.+.|+..|++++.+-+..... ..+.....+..-|.-.++.|++.
T Consensus 194 ~ilkld~~n-------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 194 DILKLDATN-------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHhcccch-------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 666665554 5677788999999999999999999999864332110 11223456667788899999999
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 468 EATELFEEARGVLEQECGSC-HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 468 ~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
+|.+.|..++.+ +|. ....+..|.+++.+..++|+..+|+...+.++.+ ++....++..-|.++..
T Consensus 267 ~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 267 KAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRRANCHLA 333 (486)
T ss_pred HHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHHHHHHHH
Confidence 999999999998 222 2234667899999999999999999999999999 99999999999999999
Q ss_pred hchHHHHHHHHHHHHHhhhhh
Q 007930 547 TGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 547 ~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+++|++|. ..++.++....+
T Consensus 334 le~~e~AV-~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 LEKWEEAV-EDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHH-HHHHHHHhhccc
Confidence 99999999 888887755443
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.64 E-value=2.8e-12 Score=121.66 Aligned_cols=318 Identities=14% Similarity=0.125 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
.+++.....++...|++++|++++++..... .+ ....+-..|.++..+|++++|...|...++.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-----~D----k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r------- 67 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQI-----LD----KLAVLEKRAELLLKLGRKEEAEKIYRELIDR------- 67 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-----CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 4566677889999999999999998754432 11 1245788999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 195 SDPRVAETCRYLAEAHIQAM-----QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLAS 269 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~ 269 (584)
+|+....+..+..+..... +.+.-..+|++.....|.... ...+...+..-.+|......|-.-
T Consensus 68 -NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~---------~~rl~L~~~~g~~F~~~~~~yl~~- 136 (517)
T PF12569_consen 68 -NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA---------PRRLPLDFLEGDEFKERLDEYLRP- 136 (517)
T ss_pred -CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc---------hhHhhcccCCHHHHHHHHHHHHHH-
Confidence 7888888888888774433 455666777766665554332 112222222223344333333221
Q ss_pred HHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc--------CCcc-cHHHHHHHHHHHHHHcccH
Q 007930 270 MVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG--------EDHL-SVASIFIRLADLYYRIGKL 340 (584)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~-~~~~~~~~la~~~~~~g~~ 340 (584)
.. ...++.+..++-.+|....+..-....+.......+.... ...| ...++++.+|..|...|++
T Consensus 137 --~l----~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~ 210 (517)
T PF12569_consen 137 --QL----RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY 210 (517)
T ss_pred --HH----hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH
Confidence 11 2233344455555555333322222222222222111100 1122 2367889999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 007930 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV 420 (584)
Q Consensus 341 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (584)
++|+++++++++.. |..+..+...|.++...|++.+|.+.++.|..+.... -.+....+..+++
T Consensus 211 ~~Al~~Id~aI~ht---------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-------RyiNsK~aKy~LR 274 (517)
T PF12569_consen 211 EKALEYIDKAIEHT---------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-------RYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-------HHHHHHHHHHHHH
Confidence 99999999999885 4457899999999999999999999999998876554 3344567888899
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCC--C---CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 421 VGRYGEARSSFESAVVKLRASGES--K---SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~--~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
.|+.++|...+..-.. .+.. . .-...+.....|.+|.+.|++..|+..|..+.+.+.....
T Consensus 275 a~~~e~A~~~~~~Ftr----~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTR----EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred CCCHHHHHHHHHhhcC----CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999877665432 1110 0 1123455566799999999999999999999999988765
No 91
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=4.6e-10 Score=103.71 Aligned_cols=464 Identities=14% Similarity=0.096 Sum_probs=284.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..++.....+..+|+ ...-...|.+|+..++-.. |. ..+-..-......|-.+-++..|++-+++.+..
T Consensus 103 RIwl~Ylq~l~~Q~~-iT~tR~tfdrALraLpvtq----H~---rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~--- 171 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGL-ITRTRRTFDRALRALPVTQ----HD---RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA--- 171 (835)
T ss_pred HHHHHHHHHHHhcch-HHHHHHHHHHHHHhCchHh----hc---cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH---
Confidence 345556667778888 8888888888887644321 22 222222233344555567777777777665321
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-------------------------------------HHhCC
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI-------------------------------------EALGD 194 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------------~~~~~ 194 (584)
....-..+...++.++|.+.+...+..-+ ...+.
T Consensus 172 ---------~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r 242 (835)
T KOG2047|consen 172 ---------REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR 242 (835)
T ss_pred ---------HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc
Confidence 11122334455566666555554432110 00001
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC---------------------------CCHHHHHHHH-
Q 007930 195 SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS---------------------------ASLEEAADRR- 246 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------------~~~~~a~~~~- 246 (584)
-.......+..||..|.+.|.+++|...|++++...-...+- +.......-.
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 122345688999999999999999999999997643211110 0000000000
Q ss_pred -----------------------------HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC
Q 007930 247 -----------------------------LMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR 297 (584)
Q Consensus 247 -----------------------------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 297 (584)
.+-.+-...|+..+-+..|.+|+....-..........+..+|..|...|+
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 011122224556666667776665433333344556778899999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC----CCCCChH-----HHHH
Q 007930 298 FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP----APATAPE-----EIAN 368 (584)
Q Consensus 298 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~-----~~~~ 368 (584)
.+.|...|+++...--. ...+.+.+|...|..-....+++.|+.+++.+...-... +.+..+. ....
T Consensus 403 l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred HHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 99999999999876111 123457889999999999999999999999987653321 0111111 1234
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF 448 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 448 (584)
+|...+.+....|-++.....|++.+++.-.. ..+..+.|..+....-++++.+.|++.+.+++ .|.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaT-------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p~ 545 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIAT-------PQIIINYAMFLEEHKYFEESFKAYERGISLFK------WPN 545 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------Ccc
Confidence 56666777777788888888888887765433 45566888888888899999999999888763 343
Q ss_pred HHHHHHHHH---HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH-HHHHHHHHHHcCChHHHHHHHHHHH-----
Q 007930 449 FGIVLNQMG---LACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV-YSNLAATYDALGRVEDAIEILEYIL----- 519 (584)
Q Consensus 449 ~~~~~~~l~---~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~a~----- 519 (584)
...+|...- ..-+..-..+.|..+|++|++.+ .|..+.. +...+..-..-|--..|+..|++|.
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 444444332 22233457889999999999874 3444443 3344555566677777777776653
Q ss_pred -----------HHHHHHhCC--------------CChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHHH
Q 007930 520 -----------KVREEKLGT--------------ANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVT 574 (584)
Q Consensus 520 -----------~~~~~~~~~--------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~ 574 (584)
.....++|. .+.+........+.+-..+|..+.|. ..+.-.-...+.+...+..
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR-aIya~~sq~~dPr~~~~fW 697 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR-AIYAHGSQICDPRVTTEFW 697 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH-HHHHhhhhcCCCcCChHHH
Confidence 122223332 13344455667788888899999888 3333333445556677777
Q ss_pred hHhhcC
Q 007930 575 KRRSGF 580 (584)
Q Consensus 575 ~~~~~~ 580 (584)
+.|..+
T Consensus 698 ~twk~F 703 (835)
T KOG2047|consen 698 DTWKEF 703 (835)
T ss_pred HHHHHH
Confidence 777654
No 92
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=5.1e-10 Score=99.87 Aligned_cols=429 Identities=14% Similarity=-0.001 Sum_probs=278.2
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHh
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLG-RFEEAVPVLERSIEVVDI 147 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~ 147 (584)
-.+...+++|..++.--+|.+.|...+++|..+.+.+.... .....+...|+.+|.... .+..|...+++++++...
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~ 121 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS 121 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Confidence 34667899999998888789999999999999988775321 334677889999999887 899999999999999743
Q ss_pred ccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHH
Q 007930 148 GKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA------------------LGDSDPRVAETCRYLAEA 209 (584)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~~~~~la~~ 209 (584)
.|......++.++..+.-..++..|++.+.-.-+.+... ...+..++..+....+.+
T Consensus 122 -----~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi 196 (629)
T KOG2300|consen 122 -----VPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQI 196 (629)
T ss_pred -----CchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 333333568899999999999999988753322111000 001111111111222221
Q ss_pred HHHh-CCH--HHHHHHHHHHHHHH---------------------HHhCC------------CCCHHHH--------HHH
Q 007930 210 HIQA-MQF--DEAENLCKKILEIH---------------------REHGH------------SASLEEA--------ADR 245 (584)
Q Consensus 210 ~~~~-g~~--~~A~~~~~~al~~~---------------------~~~~~------------~~~~~~a--------~~~ 245 (584)
.... ++. .|.++.|--.+++. ..... .+++... .++
T Consensus 197 ~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaL 276 (629)
T KOG2300|consen 197 WQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICAL 276 (629)
T ss_pred HhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhh
Confidence 1100 110 11222221111110 00000 0111110 111
Q ss_pred HHHHHH--HHHhccHHHHHHHHHHHHHHHHHcCCcchH--------HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 007930 246 RLMALV--YEAKADYESALEHLVLASMVMIANGQENEV--------AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKAT 315 (584)
Q Consensus 246 ~~l~~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 315 (584)
..+-.+ -...|-+++|.++-++++....+....+.. ...+.++..+-.-.|++.+|++....+.+.+.+.
T Consensus 277 V~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~ 356 (629)
T KOG2300|consen 277 VYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF 356 (629)
T ss_pred hhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 111111 123577899999999998877666554422 3344566777788999999999999998887765
Q ss_pred hcCC--cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007930 316 RGED--HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA 393 (584)
Q Consensus 316 ~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 393 (584)
.++- ....+.+...+|......+.++.|...|..+.+..... ...+.+-.++|.+|...|+-+.-.+.++.
T Consensus 357 p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~------dl~a~~nlnlAi~YL~~~~~ed~y~~ld~- 429 (629)
T KOG2300|consen 357 PTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI------DLQAFCNLNLAISYLRIGDAEDLYKALDL- 429 (629)
T ss_pred CchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH------HHHHHHHHhHHHHHHHhccHHHHHHHHHh-
Confidence 4311 22345667778888888999999999999999886442 34566778899999998875543333222
Q ss_pred HHHHHhCCC---CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHH
Q 007930 394 MKLLEDTPG---YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEAT 470 (584)
Q Consensus 394 ~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (584)
+.+.+.. .....+.+++..|...+.++++.||...+.+.+++.... +.....+..+..+|.+....|+..++.
T Consensus 430 --i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~ 505 (629)
T KOG2300|consen 430 --IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESR 505 (629)
T ss_pred --cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 2222101 122345677788889999999999999999999986332 123345667788899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 007930 471 ELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR--VEDAIEILEY 517 (584)
Q Consensus 471 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~ 517 (584)
+...-++.+.+++.+ .+-.......+-.+|...|+ .+...+.+.+
T Consensus 506 nmvrpamqlAkKi~D--i~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 506 NMVRPAMQLAKKIPD--IPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hccchHHHHHhcCCC--chHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 999999999887644 66656666677788888888 5556555554
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.60 E-value=1.2e-10 Score=110.80 Aligned_cols=299 Identities=18% Similarity=0.128 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
.+.++-.+.++...|+ +++|+++++..... -.+....+...|.++..+|++++|...|...+...+
T Consensus 4 SE~lLY~~~il~e~g~-~~~AL~~L~~~~~~---------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP---- 69 (517)
T PF12569_consen 4 SELLLYKNSILEEAGD-YEEALEHLEKNEKQ---------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP---- 69 (517)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHhhhhh---------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----
Confidence 4667788889999999 99999999776543 344567778999999999999999999999998763
Q ss_pred CchhhhHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHhCC--------CCh----------------HHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSM-----GLLDRSVWCYESGLEIQIEALGD--------SDP----------------RVAE 201 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~--------~~~----------------~~~~ 201 (584)
++.. .+..+..+.... .+.+.-..+|++....+++.... ... .++.
T Consensus 70 -dn~~----Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs 144 (517)
T PF12569_consen 70 -DNYD----YYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS 144 (517)
T ss_pred -CcHH----HHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch
Confidence 2222 234444443222 23444455555443332110000 000 0112
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH---------SASLEEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
....+-.+|....+..-...++...+........ .......++++.++..|...|++++|++++++++..
T Consensus 145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h- 223 (517)
T PF12569_consen 145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH- 223 (517)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Confidence 2222222333222222222222222222111110 112334678899999999999999999999999884
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALR 352 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 352 (584)
.|.....+...|.++-..|++.+|.+.++.+..+ +...-.+....+..+.+.|+.++|...+..-..
T Consensus 224 -----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 224 -----TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred -----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 7888999999999999999999999999999887 566666777788889999999999887765533
Q ss_pred HHhcCCCCCCh--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCc
Q 007930 353 VCAKPAPATAP--EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH 404 (584)
Q Consensus 353 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 404 (584)
.... +..+- ....+.....|.+|.+.|++..|++.|....+++.+...+.
T Consensus 291 ~~~~--~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 291 EDVD--PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred CCCC--cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 2211 11111 12344556679999999999999999999999988775543
No 94
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.59 E-value=2.4e-13 Score=121.57 Aligned_cols=229 Identities=19% Similarity=0.196 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcc
Q 007930 242 AADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHL 321 (584)
Q Consensus 242 a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 321 (584)
+..+...|..|...|++++|.+.|.++.......++....+..+...+.++... ++++|+.+++++++++...+ ...
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHH
Confidence 455666778888889999999999999999988888888888988888888766 99999999999999998765 345
Q ss_pred cHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 322 SVASIFIRLADLYYRI-GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 322 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
..+.++..+|.+|... |++++|+++|++++++++. .........++..+|.++...|+|++|++.|++......+.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~---e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ---EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 6688999999999999 9999999999999999987 33566778899999999999999999999999987754333
Q ss_pred CCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHH
Q 007930 401 PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ--LYRINEATELFEEARG 478 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~ 478 (584)
..........+...+.+++..|++..|...+++......... ...-......+-.++.. ...+++|+.-|.....
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~---~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA---SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST---TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 222334445667788899999999999988888766422221 12234556666666654 3567777777766655
Q ss_pred H
Q 007930 479 V 479 (584)
Q Consensus 479 ~ 479 (584)
+
T Consensus 266 l 266 (282)
T PF14938_consen 266 L 266 (282)
T ss_dssp -
T ss_pred c
Confidence 5
No 95
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.8e-12 Score=110.57 Aligned_cols=389 Identities=12% Similarity=0.080 Sum_probs=253.1
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH-----
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV----- 144 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 144 (584)
.-..-+-+|.+++..|+ |++|+..|+-+... .+. .++...+|+-+++-+|.|.+|.....++-+.
T Consensus 56 E~~~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~------~~~---~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~R 125 (557)
T KOG3785|consen 56 EDSLQLWIAHCYFHLGD-YEEALNVYTFLMNK------DDA---PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIR 125 (557)
T ss_pred hHHHHHHHHHHHHhhcc-HHHHHHHHHHHhcc------CCC---CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHH
Confidence 34455668899999999 99999988877652 122 2456668999999999999999876655221
Q ss_pred -----HHhccCCchhhh--------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 007930 145 -----VDIGKGSDRALA--------KFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHI 211 (584)
Q Consensus 145 -----~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 211 (584)
..+.. .+.... ..+-...++.+.+..-.|++|++.|.+++.- +|+....-..+|.||+
T Consensus 126 Llfhlahkln-dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--------n~ey~alNVy~ALCyy 196 (557)
T KOG3785|consen 126 LLFHLAHKLN-DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--------NPEYIALNVYMALCYY 196 (557)
T ss_pred HHHHHHHHhC-cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--------ChhhhhhHHHHHHHHH
Confidence 11111 111100 1122456777788888899999999998876 7888888889999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh--ccHHHHHH--H-------HHHHHHHHHH------
Q 007930 212 QAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAK--ADYESALE--H-------LVLASMVMIA------ 274 (584)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~--g~~~~A~~--~-------~~~a~~~~~~------ 274 (584)
+..-++-+.+.+.--++..++.. .+.+..+...++. |+..++.. . |..+..+++.
T Consensus 197 KlDYydvsqevl~vYL~q~pdSt--------iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFr 268 (557)
T KOG3785|consen 197 KLDYYDVSQEVLKVYLRQFPDST--------IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFR 268 (557)
T ss_pred hcchhhhHHHHHHHHHHhCCCcH--------HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEe
Confidence 99999998888877776554332 1233333333332 22211110 0 0011111110
Q ss_pred cCC---------cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHH
Q 007930 275 NGQ---------ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKS 345 (584)
Q Consensus 275 ~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 345 (584)
.+. -..+..+..++...|..+++..+|....+.. .|..+.-+...|.++...|+-....+
T Consensus 269 ngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----------~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----------DPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred CCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----------CCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 000 1123566788888999999999988776542 67888888888999998888777777
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHH
Q 007930 346 YCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYG 425 (584)
Q Consensus 346 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 425 (584)
+++-+-....-.......-+.......++.+++...++++.+.++...-..+.+. -....+++.++...|++.
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd-------D~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND-------DDFNLNLAQAKLATGNYV 410 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------chhhhHHHHHHHHhcChH
Confidence 6666655443322121222333445567788888889999999887766655443 234568999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 426 EARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 426 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
+|++.|-+.-.. .-.........++.+|...++++-|...+-+.-. ..+....+..+|......
T Consensus 411 eaEelf~~is~~-------~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---------~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 411 EAEELFIRISGP-------EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---------PSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHhhhcCh-------hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---------chhHHHHHHHHHHHHHHH
Confidence 999998765431 1112234566789999999999999887754211 233444566678878888
Q ss_pred CChHHHHHHHHHHH
Q 007930 506 GRVEDAIEILEYIL 519 (584)
Q Consensus 506 g~~~~A~~~~~~a~ 519 (584)
+++=-|.+.|...-
T Consensus 475 ~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 475 NEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHHHHhhhHHH
Confidence 87766666665543
No 96
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.5e-09 Score=96.80 Aligned_cols=430 Identities=14% Similarity=0.059 Sum_probs=287.7
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGK 149 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 149 (584)
....++..+..-+.... ...|...+++|+.+++ ..-..++.....--.+|+..-|.+.|++-++..
T Consensus 106 ~itLWlkYae~Emknk~-vNhARNv~dRAvt~lP---------RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~---- 171 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQ-VNHARNVWDRAVTILP---------RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWE---- 171 (677)
T ss_pred cchHHHHHHHHHHhhhh-HhHHHHHHHHHHHhcc---------hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC----
Confidence 34445555555555555 5666666666665533 233444444555556899999999999987653
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 007930 150 GSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEI 229 (584)
Q Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 229 (584)
|.. .++......-...+..+.|...|++-+-. ||. ...+...+..-...|+..-|...|++|++.
T Consensus 172 ----P~e--qaW~sfI~fElRykeieraR~IYerfV~~--------HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 172 ----PDE--QAWLSFIKFELRYKEIERARSIYERFVLV--------HPK-VSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred ----CcH--HHHHHHHHHHHHhhHHHHHHHHHHHHhee--------ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 111 23555556666778889999999988776 654 467788888899999999999999999988
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHH--HH
Q 007930 230 HREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY--QK 307 (584)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--~~ 307 (584)
..+. ..........+..-..+..++.|.-.|.-|+..+.+. ..-..+-..-..--+-|+...-.+.. .+
T Consensus 237 ~~~d-----~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~----raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 237 LGDD-----EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG----RAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred hhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 7543 2233445566666677788888888888777643211 11222233333333445543222211 11
Q ss_pred HHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH-HHHhcCHHHH
Q 007930 308 GLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI-YEALNEHEEA 386 (584)
Q Consensus 308 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A 386 (584)
-++. +... .++|..-.+++..-.+-...|+.+.-.+.|++|+...+-.............|.+.+.. -....+.+.+
T Consensus 308 k~qY-E~~v-~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQY-EKEV-SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHH-HHHH-HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 1111 1111 12677888888888888889999999999999997653211000111122233333321 2346789999
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH
Q 007930 387 LKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (584)
.+.|+.++++.|.. ....+.++...|....++.+...|.+.+-.|+..+.. ..+......+-.+++++
T Consensus 386 r~vyq~~l~lIPHk---kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK---------~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 386 RQVYQACLDLIPHK---KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK---------DKLFKGYIELELQLREF 453 (677)
T ss_pred HHHHHHHHhhcCcc---cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc---------hhHHHHHHHHHHHHhhH
Confidence 99999999987644 6677888888999999999999999999999875322 34555556677788999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
+....+|++-++. .|....++...|.+-..+|+.+.|...|+-|++-- .-+-|. -.+......-..
T Consensus 454 DRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp----~ldmpe--llwkaYIdFEi~ 519 (677)
T KOG1915|consen 454 DRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRARAIFELAISQP----ALDMPE--LLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc----ccccHH--HHHHHhhhhhhh
Confidence 9999999999998 88999999999999999999999999999888731 011222 223344555667
Q ss_pred hchHHHHHHHHHHHHHhhhh
Q 007930 547 TGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 547 ~g~~~~A~~~~l~~~~~~~~ 566 (584)
.|.++.|. ..++.+|+..+
T Consensus 520 ~~E~ekaR-~LYerlL~rt~ 538 (677)
T KOG1915|consen 520 EGEFEKAR-ALYERLLDRTQ 538 (677)
T ss_pred cchHHHHH-HHHHHHHHhcc
Confidence 88888888 77777776544
No 97
>PLN02789 farnesyltranstransferase
Probab=99.57 E-value=4.4e-12 Score=113.62 Aligned_cols=209 Identities=12% Similarity=0.030 Sum_probs=174.7
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG-KLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
++...+++++|+..+.+++++ +|....++...+.++..+| ++++++.++++++....+ ...+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---------nyqa 108 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---------NYQI 108 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---------chHH
Confidence 455678999999999999998 7899999999999999998 689999999999988543 3567
Q ss_pred HHHHHHHHHHhcCH--HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc
Q 007930 370 LTEISAIYEALNEH--EEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA 447 (584)
Q Consensus 370 ~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 447 (584)
|...+.++...|+. ++++.+++++++..++. ..++...+.++...|+++++++++.++++. .+
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~ 173 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------YHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DV 173 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CC
Confidence 88888888888874 67899999999887776 678889999999999999999999999985 34
Q ss_pred hHHHHHHHHHHHHHhh---CCH----HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHH
Q 007930 448 FFGIVLNQMGLACLQL---YRI----NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILE 516 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 516 (584)
....+|+.++.+.... |.+ ++++.+..+++.+ .|+...++..++.++.. +++..+|...+.
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 4567889999887765 333 5788888899998 88888999999999988 455677888888
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 517 YILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 517 ~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
+++.. .|....++.-|+.+|...
T Consensus 246 ~~~~~--------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 246 EVLSK--------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred Hhhcc--------cCCcHHHHHHHHHHHHhh
Confidence 87764 788889999999999864
No 98
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.56 E-value=1.1e-12 Score=117.36 Aligned_cols=229 Identities=19% Similarity=0.185 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc
Q 007930 199 VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278 (584)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 278 (584)
.+..+...|.+|...+++++|...|.++.....+.. +....+..+...+.++... ++++|+.++++++.++...+..
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 355667778888999999999999999999988865 4566677788888887666 9999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 279 NEVAAIDVSIGNIYMSL-CRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
...+.++..+|.+|... |++++|+++|++|+++++... .......++..+|.++...|+|++|++.|++........
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999 999999999999999998764 234567788899999999999999999999998765331
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH--hccHHHHHHHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV--VGRYGEARSSFESAV 435 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~ 435 (584)
.......-..+...+.++...||+..|...+++.....+...+ .....+...+-.++.. ...+.+++.-|.+.-
T Consensus 189 --~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~--s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 189 --NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS--SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp --CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT--SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred --cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1123344556677888999999999999998887776655433 2224444455555543 335666666665544
Q ss_pred H
Q 007930 436 V 436 (584)
Q Consensus 436 ~ 436 (584)
.
T Consensus 265 ~ 265 (282)
T PF14938_consen 265 R 265 (282)
T ss_dssp -
T ss_pred c
Confidence 3
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.56 E-value=1.5e-12 Score=114.33 Aligned_cols=187 Identities=14% Similarity=0.021 Sum_probs=148.0
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.......++.+|..+...|++++|+..+++++...+. .+....++..+|.++...|++++|+..++++++..++
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 4667789999999999999999999999999887532 3455678899999999999999999999999998775
Q ss_pred CCCCcccHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHcCCCCC---------chHHHHHHHHHHHHHh
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVV--------GRYGEARSSFESAVVKLRASGESKS---------AFFGIVLNQMGLACLQ 462 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~ 462 (584)
.. ....+++.+|.++... |++++|+..+++++........... .........+|.++..
T Consensus 103 ~~----~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 178 (235)
T TIGR03302 103 HP----DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK 178 (235)
T ss_pred CC----chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 2234677888888876 8899999999999875322100000 0001112467889999
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 463 LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 463 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.|++.+|+..++++++. .++.|....++..+|.++..+|++++|..+++.....
T Consensus 179 ~g~~~~A~~~~~~al~~-----~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 179 RGAYVAAINRFETVVEN-----YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred cCChHHHHHHHHHHHHH-----CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999988 3445677899999999999999999999988877654
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.55 E-value=8.3e-13 Score=116.03 Aligned_cols=180 Identities=17% Similarity=0.087 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
+.....++.+|..+...|++++|+..+++++...+.. +....++..+|.++...|++++|+..++++++...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---- 101 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---- 101 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc----
Confidence 4557789999999999999999999999998876543 22345678999999999999999999999998643
Q ss_pred CCCchHHHHHHHHHHHHHhh--------CCHHHHHHHHHHHHHHHHHHhCCCCCchHH---H--------------HHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQL--------YRINEATELFEEARGVLEQECGSCHLDTLG---V--------------YSNL 498 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~--------------~~~l 498 (584)
.++....+++.+|.++... |++++|+..+++++.. +|.... + ...+
T Consensus 102 -~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 102 -NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--------YPNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred -CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333456788999999876 8899999999999987 443322 2 2467
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 499 AATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
|.+|...|++.+|+..++++++.+ +++|....+++.+|.++..+|++++|. ..++.+....|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~-~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ-DAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCC
Confidence 889999999999999999999873 335777899999999999999999999 67777665544
No 101
>PLN02789 farnesyltranstransferase
Probab=99.50 E-value=5.6e-11 Score=106.62 Aligned_cols=209 Identities=11% Similarity=-0.029 Sum_probs=170.3
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 251 VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC-RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 251 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
++...+.+++|+..+.+++.+ .|....++...+.++..+| ++++++..+.+++.. +|....+++.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~ 111 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHH 111 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHH
Confidence 344557788999999999885 7888889999999999998 689999999999987 7888889999
Q ss_pred HHHHHHHcccH--HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccH
Q 007930 330 LADLYYRIGKL--RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTI 407 (584)
Q Consensus 330 la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 407 (584)
.+.++...|+. ++++.+++++++...+ ...+|...+.++...|+++++++++.++++..+..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpk---------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------- 175 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAK---------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------- 175 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-------
Confidence 99999888874 7789999999988543 46899999999999999999999999999987666
Q ss_pred HHHHHHHHHHHHHh---ccH----HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh----hCCHHHHHHHHHHH
Q 007930 408 AGIEAQMGVMLYVV---GRY----GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ----LYRINEATELFEEA 476 (584)
Q Consensus 408 ~~~~~~l~~~~~~~---g~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a 476 (584)
..+++..+.+.... |.+ ++++.+..+++.+ .|....+|..++.++.. .++..+|+..+.++
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 55777777777665 333 4678888888875 34456788888888877 35567788888887
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 477 RGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
+.. .+....++..|+.+|...
T Consensus 248 ~~~--------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 248 LSK--------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hcc--------cCCcHHHHHHHHHHHHhh
Confidence 765 677778999999999863
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.48 E-value=1.6e-12 Score=102.81 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH
Q 007930 387 LKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (584)
..++++++++.+.. +..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++
T Consensus 13 ~~~~~~al~~~p~~----------~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPET----------VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhH
Confidence 45678888776553 346899999999999999999999984 555678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
++|+..|++++.+ +|....+++++|.++...|++++|+..|++++.+ .|+....+.+.+.+...
T Consensus 75 ~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 75 TTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHH
Confidence 9999999999998 8899999999999999999999999999999998 78888888888877665
Q ss_pred hc
Q 007930 547 TG 548 (584)
Q Consensus 547 ~g 548 (584)
++
T Consensus 139 l~ 140 (144)
T PRK15359 139 VD 140 (144)
T ss_pred HH
Confidence 43
No 103
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=9.4e-09 Score=90.06 Aligned_cols=302 Identities=16% Similarity=0.082 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchH
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEV 281 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 281 (584)
...+-|..-...|+|.+|++...+.-+..+ .+ ..++..-+.....+|+++.+-.++.++-+. .....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e------~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~-----~~~~~ 152 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGE------QP--VLAYLLAAEAAQQRGDEDRANRYLAEAAEL-----AGDDT 152 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCc------ch--HHHHHHHHHHHHhcccHHHHHHHHHHHhcc-----CCCch
Confidence 344455666778999999998887543321 22 234667778888999999999999887542 12344
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
..+....+.+....|+++.|..-..++++. .|....++.....+|...|++.....++.+..+.. -
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~------~ 218 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG------L 218 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc------C
Confidence 556788899999999999999999999888 78888899999999999999999988887765542 1
Q ss_pred ChHHHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 362 APEEIANGLTEISAI--YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 362 ~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
-+.....-+.+.+.. +...++-..+.. +....+-.+.....++ .+...++.-+...|+.++|.+..+++++..
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr~lr~~p---~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~- 293 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPRKLRNDP---ELVVAYAERLIRLGDHDEAQEIIEDALKRQ- 293 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHhccHHhhcCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHhc-
Confidence 111222222222221 122222222222 2222222222222222 334467888899999999999999998841
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.+ ......++ ...-+++..=++..++.++. +|+.+..+..||.++.+.+.|.+|..+|+.++
T Consensus 294 -------~D-~~L~~~~~--~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 294 -------WD-PRLCRLIP--RLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred -------cC-hhHHHHHh--hcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 12111111 23457888888888888887 88888999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 520 KVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
.. .| ....+..+|.++.++|+..+|.+..-+.++
T Consensus 356 ~~--------~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 356 KL--------RP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hc--------CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 86 33 357788999999999999999854444443
No 104
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=5.8e-09 Score=91.33 Aligned_cols=300 Identities=16% Similarity=0.061 Sum_probs=198.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
...-|..-...|+|.+|.....+.-+. .+.-..++..-+..-...|+++.+-.++.++-+..++..
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~------ 152 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT------ 152 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch------
Confidence 445566667778888888887775554 344455666667788888999999888888876532211
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.......+.+....|+++.|.....++... .+....++.....+|...|++.+...++.+..+.. - . +
T Consensus 153 -l~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-~-l---~ 220 (400)
T COG3071 153 -LAVELTRARLLLNRRDYPAARENVDQLLEM------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-L-L---S 220 (400)
T ss_pred -HHHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-C-C---C
Confidence 234667788888889999998888877653 66666777778888999999988887776654320 0 0 1
Q ss_pred ccHHHHHHHHHHH--HHHcccHHHHHH---HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007930 321 LSVASIFIRLADL--YYRIGKLRESKS---YCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395 (584)
Q Consensus 321 ~~~~~~~~~la~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 395 (584)
.....-+.+.+.. +...++-..+.. +.+..-...+ ........++.-+...|+.++|.+..+++++
T Consensus 221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr---------~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLR---------NDPELVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhh---------cChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1122222222211 111222222222 2222211111 1134555677888899999999999998887
Q ss_pred HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 007930 396 LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEE 475 (584)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (584)
..-+. .....+ -...-++...=++..++.++. ++..+..+..+|.++.+.+.|.+|..+|+.
T Consensus 292 ~~~D~--------~L~~~~--~~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 292 RQWDP--------RLCRLI--PRLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred hccCh--------hHHHHH--hhcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 64332 111111 123456666666666666663 344457899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 476 ARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 476 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+++. .++ ...+..+|.++.+.|+..+|.+.+++++.+.
T Consensus 354 Al~~--------~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 354 ALKL--------RPS-ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHhc--------CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9986 443 4678899999999999999999999999654
No 105
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=9.5e-09 Score=95.33 Aligned_cols=427 Identities=15% Similarity=0.054 Sum_probs=264.7
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHH--HHHHHHHhcC-------------ChhhH
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLH--MLAAIYCSLG-------------RFEEA 134 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g-------------~~~~A 134 (584)
..-.+..+|.+|.+.|. +++|.+.|++++.-.-...+ -..+.++|. .-..+...++ +.+-.
T Consensus 247 ~g~Lw~SLAdYYIr~g~-~ekarDvyeeai~~v~tvrD---Ft~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGL-FEKARDVYEEAIQTVMTVRD---FTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhheehhh---HHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 35567899999999999 99999999999975433321 111111111 1111111111 11222
Q ss_pred HHHHHHHHHHHHhcc----CCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 007930 135 VPVLERSIEVVDIGK----GSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAH 210 (584)
Q Consensus 135 ~~~~~~al~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 210 (584)
...|+..+...+-.. -..++. .+--.+-.+-...|+..+-+..|.+|+....-... .......+..+|..|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~---nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPH---NVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCc---cHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHH
Confidence 333333333211000 000000 11223344555678888889999988876321111 123456888999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------cCCcchH---
Q 007930 211 IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA------NGQENEV--- 281 (584)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~--- 281 (584)
...|+.+.|...|+++.+..-. .-...+.+|...|..-....+++.|+...+.|...-.. .+..+-.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 9999999999999999875322 22345778889999999999999999999887532111 1122222
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 282 ---AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 282 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
..++...+......|-++.....|++.+++ ....+....+.|..+....-++++.+.|++.+.+++=
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidL--------riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~-- 543 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDL--------RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW-- 543 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC--
Confidence 344556667777788888888888888887 4566777888999999999999999999999998743
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
+...++...|......-+..-..+.|..+|++|++.++.. ..-.++...+.+-..-|-...|+..|+++-...
T Consensus 544 --p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~-----~aKtiyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 544 --PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE-----HAKTIYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred --ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 1222333333333333333347899999999999976532 112344455666677788888888888876531
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQL----YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
++.. ...+-.+|... --...-...|++|++... +..........+..-...|..+.|...
T Consensus 617 -------~~a~---~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp------~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 617 -------KEAQ---RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP------DSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred -------CHHH---HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC------hHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1111 11121222211 112334567888888721 234445677888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhch
Q 007930 515 LEYILKVREEKLGTANP-DIDDEKERLAELLKETGR 549 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~ 549 (584)
|.-+-+++ +| .+.+.+...-..-.+-|+
T Consensus 681 ya~~sq~~-------dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 681 YAHGSQIC-------DPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHhhhhcC-------CCcCChHHHHHHHHHHHhcCC
Confidence 98887774 22 223444445555566676
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.40 E-value=5.6e-11 Score=117.49 Aligned_cols=156 Identities=12% Similarity=0.022 Sum_probs=134.9
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Q 007930 338 GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVM 417 (584)
Q Consensus 338 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 417 (584)
+....+.+.+-+++...+. .+....++.+||.+....|.+++|...++.++++.|+. ..+..+++.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a~~ 129 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRR------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------SEAFILMLRG 129 (694)
T ss_pred hhhcchHhhHHHHHHHHHh------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHHHH
Confidence 3334444444555555443 23457899999999999999999999999999998887 6788899999
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Q 007930 418 LYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSN 497 (584)
Q Consensus 418 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 497 (584)
+.+.+++++|+..+++++.. .|..+..++.+|.++.+.|++++|+.+|++++.- +|+...++..
T Consensus 130 L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~ 193 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVG 193 (694)
T ss_pred HHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHH
Confidence 99999999999999999984 5667899999999999999999999999999985 8888999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 498 LAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 498 la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+|.++...|+.++|...|+++++..
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999973
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=4.1e-08 Score=93.77 Aligned_cols=375 Identities=17% Similarity=0.118 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH---hCCCChHH----------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA---LGDSDPRV----------AETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
.+|++.+..+...++.+.|+++|+++-.-...+ +.+ +|.. ...|...|...-..|+.+.|+.+|..
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e-~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE-YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh-ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 458999999999999999999999863221111 111 1211 23455567777778888888888877
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHH
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY 305 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (584)
+-. |+.+-.+.+.+|+.++|-...++. ....+.+.+|+.|...|++.+|+.+|
T Consensus 938 A~D----------------~fs~VrI~C~qGk~~kAa~iA~es-----------gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 938 AKD----------------YFSMVRIKCIQGKTDKAARIAEES-----------GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred hhh----------------hhhheeeEeeccCchHHHHHHHhc-----------ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 644 445555666677777766554431 22335577888888889988888888
Q ss_pred HHHHHH------HHHhhcCCcc------cHHHHHHHHHHHHHHcc-cHHHHHHHHHHH------------------HHHH
Q 007930 306 QKGLTV------FKATRGEDHL------SVASIFIRLADLYYRIG-KLRESKSYCENA------------------LRVC 354 (584)
Q Consensus 306 ~~al~~------~~~~~~~~~~------~~~~~~~~la~~~~~~g-~~~~A~~~~~~a------------------l~~~ 354 (584)
.+|-.. +++..-.+.. ....-....|..|...| ..+.|..+|.++ +++.
T Consensus 991 TrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 991 TRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 765443 2221100000 00001112234444444 555555554433 2222
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHH------HHHHHHHHhCC----------------C--CcccHHHH
Q 007930 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLL------QKAMKLLEDTP----------------G--YHSTIAGI 410 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~a~~~~~~~~----------------~--~~~~~~~~ 410 (584)
.+.. +....+..+..-+..+....+|++|..++ +.|+.++.... + +......+
T Consensus 1071 a~DL---d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1071 AKDL---DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred HHhc---CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHH
Confidence 1111 11122455666778888888899887765 44555543320 1 11234567
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH------cCCC-----------------------------CCc--------
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRA------SGES-----------------------------KSA-------- 447 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~-----------------------------~~~-------- 447 (584)
+..+|.++.++|.|..|-+-|.+|-+.++. .|+. ..|
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~t 1227 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIET 1227 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHh
Confidence 889999999999999999888876543322 1211 001
Q ss_pred --hHHHHHHHHHHHHH--------hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH----HHHHHHc----CChH
Q 007930 448 --FFGIVLNQMGLACL--------QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL----AATYDAL----GRVE 509 (584)
Q Consensus 448 --~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----a~~~~~~----g~~~ 509 (584)
....++..||..|- ...+|++|...+++|.+-..+....++.. ..+.+| +.+-... --.+
T Consensus 1228 FYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~--t~l~~Lq~~~a~vk~~l~~~q~~~e 1305 (1416)
T KOG3617|consen 1228 FYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMST--TGLDALQEDLAKVKVQLRKLQIMKE 1305 (1416)
T ss_pred hhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 01123334444443 23456777766666665554443322211 122222 2211111 1112
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 510 DAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 510 ~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
++..-.+++-.+.++-.-++--.....+..|.+.+....+|..|. ..++.+-...|.
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~Ay-Ral~el~~k~p~ 1362 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAY-RALTELQKKVPN 1362 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHH-HHHHHHhhcCCc
Confidence 333333333333322212222234566777888899999999999 888887766554
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.38 E-value=6.6e-11 Score=98.96 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=110.6
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 500 (584)
.++.++++..+++++.. .|.....|..+|.++...|++++|+..|++++.+ .|+...++..+|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 56778888888888884 4556789999999999999999999999999999 8888999999999
Q ss_pred HH-HHcCC--hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 501 TY-DALGR--VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 501 ~~-~~~g~--~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
++ ...|+ +++|...++++++. +|++..++..+|..+...|++++|+ ..++.+++..|.....
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCccH
Confidence 74 67787 59999999999998 8999999999999999999999999 8889888776665443
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=1.8e-11 Score=96.80 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC
Q 007930 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR 507 (584)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 507 (584)
..++++++++ .|. .+..+|.++...|++++|+.+|++++.+ +|....++..+|.++...|+
T Consensus 13 ~~~~~~al~~--------~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPE---TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4577888774 222 3567899999999999999999999998 89999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 508 VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 508 ~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
+++|+..|++++.+ +|....+++++|.++..+|++++|+ ..++.++...|+....-
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi-~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAR-EAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChHHH
Confidence 99999999999998 8999999999999999999999999 99999998888765543
No 110
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.37 E-value=8.3e-07 Score=88.98 Aligned_cols=471 Identities=12% Similarity=0.040 Sum_probs=292.3
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIG 148 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 148 (584)
..+.+.+++|..++..-++++.|..++++++.+.++ . .-......+.+.++.++.+.+... |...+++.++..+..
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~--~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER-H--RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-c--chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 447788999999997777799999999999998776 1 122234566678899999888877 999999999987552
Q ss_pred cCCchhhhHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 007930 149 KGSDRALAKFSGYMQL-GDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 227 (584)
. ....... +..+ .......+++..|++.++......... .+......+....+.++...+..+++++..+++.
T Consensus 133 ~-~~~w~~~---frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 133 G-HSAWYYA---FRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred C-chhHHHH---HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 1 1122111 2222 222223389999999999998886532 1122234455555677788888999999999997
Q ss_pred HHHHHh--CCCCCHHHHHHHHHHHH--HHHHhccHHHHHHHHHHHHHHHHHcCCcc------------------------
Q 007930 228 EIHREH--GHSASLEEAADRRLMAL--VYEAKADYESALEHLVLASMVMIANGQEN------------------------ 279 (584)
Q Consensus 228 ~~~~~~--~~~~~~~~a~~~~~l~~--~~~~~g~~~~A~~~~~~a~~~~~~~~~~~------------------------ 279 (584)
...... .+...+....++..+-. ++...|+++.+...+.+.-..+....+.+
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~ 286 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG 286 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence 766654 11113333344444444 34556777777776665544443322211
Q ss_pred ------------hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc---CCcc---------------cHHHHHHH
Q 007930 280 ------------EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG---EDHL---------------SVASIFIR 329 (584)
Q Consensus 280 ------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~---------------~~~~~~~~ 329 (584)
..+-++..-|......+..++|.++++++++..++... ...+ ....++..
T Consensus 287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y 366 (608)
T PF10345_consen 287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY 366 (608)
T ss_pred ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence 11233444566667778888999999999999887661 1100 01234455
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC----Ccc
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG----YHS 405 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~ 405 (584)
++.+..-.+++..|......+.....+.............++..|..+...|+.+.|..+|.+..-....... ...
T Consensus 367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 6777788899999999999888876553111123345677888999999999999999999855533222111 222
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC-CchHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHHHH-H
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK-SAFFGIVLNQMGLACL--QLYRINEATELFEEARGVL-E 481 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~-~ 481 (584)
....+..++..++...+.-.....-+.+.++......... ......++..+-..+. ..-...++...+.++++.. .
T Consensus 447 l~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~ 526 (608)
T PF10345_consen 447 LYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANN 526 (608)
T ss_pred HHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence 2334445677777766654442222333333222221111 1122222222221221 2234458999999999988 4
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH---HHHHHHHHHHHhchHHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDD---EKERLAELLKETGRARNRK 554 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 554 (584)
.... ..-...++..++..+. .|+..+.......+..+.++. ++..+..+ +-.-++..+...|+.++|.
T Consensus 527 ~~~n--~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~ 597 (608)
T PF10345_consen 527 KLGN--SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--SDYSDQLWHLVASGMLADSYEVQGDRDKAE 597 (608)
T ss_pred hhcc--chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 4332 3344445666777666 899999888888888877664 12233333 3335677788999999997
No 111
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=7.5e-09 Score=86.74 Aligned_cols=225 Identities=16% Similarity=0.172 Sum_probs=166.3
Q ss_pred HhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 007930 126 CSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRY 205 (584)
Q Consensus 126 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 205 (584)
.+..+|.+|++++..-.+..++ .. ..+..+|.||+...+|..|..+|++.-.+ .|........
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~-----~r----AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY 83 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR-----SR----AGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY 83 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc-----ch----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence 5566788888877665443211 11 34888999999999999999999998777 7888888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 007930 206 LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAID 285 (584)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 285 (584)
.+..++..+.+..|+......... ......++..-+-+....+++..+....++. .....+...
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~--------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl--------p~en~Ad~~ 147 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN--------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL--------PSENEADGQ 147 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC--------HHHHHHHHHHHHHHhcccccCcchHHHHHhc--------cCCCccchh
Confidence 899999999999998887665432 1122234555566677778877777666542 123556778
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC------
Q 007930 286 VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP------ 359 (584)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 359 (584)
.+.|.+.++.|+++.|.+-|+.+++. ....+..-++++.++++.|+++.|+++..+.++...+..+
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 89999999999999999999999987 4455566788999999999999999999998876543211
Q ss_pred ---CCC-----------hHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 007930 360 ---ATA-----------PEEIANGLTEISAIYEALNEHEEALKLLQ 391 (584)
Q Consensus 360 ---~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 391 (584)
+.+ ......+++..+-+++..|+++.|.+.+.
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 000 12345567777888999999988877653
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.34 E-value=5.9e-10 Score=111.10 Aligned_cols=148 Identities=13% Similarity=0.111 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.++..+...+...+++++|+..++.+++. +|.....++.+|.++...+++.++... .++...+...
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~---- 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL---- 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc----
Confidence 55888888888999999999999988887 788888999999999888887777666 5555544332
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
++ .+++++...+. +.+..-.+++.+|.||-.+|+.++|...++++++.
T Consensus 98 ------------------~~-~~ve~~~~~i~------~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------- 145 (906)
T PRK14720 98 ------------------KW-AIVEHICDKIL------LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA------- 145 (906)
T ss_pred ------------------ch-hHHHHHHHHHH------hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------
Confidence 22 22233322211 23334447888999999999999999999999988
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
+|..+.+++++|..|... ++++|+.++.+++...
T Consensus 146 -D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 146 -DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred -CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 688899999999999988 9999999999988764
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.34 E-value=1.2e-10 Score=115.20 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=139.2
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 007930 170 SMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMA 249 (584)
Q Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~ 249 (584)
..+....+...+-+++...+. .|....++..||.+....|.+++|..+++.++++.|.+. .+...++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--------~a~~~~a 127 (694)
T PRK15179 61 RHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--------EAFILML 127 (694)
T ss_pred HhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--------HHHHHHH
Confidence 334455555556666666555 477789999999999999999999999999999887654 4589999
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
.++.+.+++++|+..+++++.. .|+....++.+|.++...|++++|+..|++++.. +|....++..
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~ 193 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSG------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVG 193 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHH
Confidence 9999999999999999998874 8888999999999999999999999999999984 7888999999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
+|.++...|+.++|...|+++++...
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999873
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.34 E-value=5.6e-10 Score=111.26 Aligned_cols=254 Identities=14% Similarity=0.053 Sum_probs=182.5
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 007930 61 DESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLER 140 (584)
Q Consensus 61 ~~~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 140 (584)
.....-+|....++..+...+...++ +++|+..++.+++. +|+....++.+|.++++.+++.++... .
T Consensus 21 ~~~~~~~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~---------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~ 88 (906)
T PRK14720 21 ADANNYSLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKE---------HKKSISALYISGILSLSRRPLNDSNLL--N 88 (906)
T ss_pred cccccCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHh---------CCcceehHHHHHHHHHhhcchhhhhhh--h
Confidence 34455678889999999999999999 99999999988875 666788999999999999999988877 6
Q ss_pred HHHHHHhccCCchhhhH----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 007930 141 SIEVVDIGKGSDRALAK----------FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAH 210 (584)
Q Consensus 141 al~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 210 (584)
++..........-.... -.+++.+|.||-.+|++++|...|++++++ +|..+.++.++|..|
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSY 160 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHH
Confidence 66655332211000000 135889999999999999999999999999 789999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 007930 211 IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGN 290 (584)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 290 (584)
... ++++|+.++.+++...-..... ...-..|.. .+.....+++.=....++ .............+.-+=.
T Consensus 161 ae~-dL~KA~~m~~KAV~~~i~~kq~--~~~~e~W~k--~~~~~~~d~d~f~~i~~k----i~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYRFIKKKQY--VGIEEIWSK--LVHYNSDDFDFFLRIERK----VLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHh-hHHHHHHHHHHHHHHHHhhhcc--hHHHHHHHH--HHhcCcccchHHHHHHHH----HHhhhccchhHHHHHHHHH
Confidence 999 9999999999999875543321 111111111 112222222222222222 1222123445566666778
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
.|...++|++++.+++.+++. .+....+...++.+|. +.|.. ...+++.+++.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s 284 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS 284 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence 889999999999999999998 6778888999999988 45544 56666666664
No 115
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.5e-08 Score=84.93 Aligned_cols=271 Identities=14% Similarity=-0.001 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
..+....+.|.+.++.|+++.|++-|+.+++...-.+ ..-++++.+++..|+++.|+++..+.+..-. .+
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp--------llAYniALaHy~~~qyasALk~iSEIieRG~--r~ 211 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP--------LLAYNLALAHYSSRQYASALKHISEIIERGI--RQ 211 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCc--------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhh--hc
Confidence 4566778888889999999999999999988654322 2357788899999999999988876654321 11
Q ss_pred cc-------------------------hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 007930 278 EN-------------------------EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLAD 332 (584)
Q Consensus 278 ~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 332 (584)
+| ....+++..+.++++.|+++.|.+.+...--.. .+...+.++.+++.
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa------E~elDPvTLHN~Al 285 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA------EEELDPVTLHNQAL 285 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc------cccCCchhhhHHHH
Confidence 11 124455666777888888887766554321110 12234456666665
Q ss_pred HHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC-cccHHHHH
Q 007930 333 LYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY-HSTIAGIE 411 (584)
Q Consensus 333 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~ 411 (584)
.-. .+++.+...-+.-.+.+.. .-..++.++-.+|++..-++.|...+. +.... ...+...+
T Consensus 286 ~n~-~~~p~~g~~KLqFLL~~nP---------fP~ETFANlLllyCKNeyf~lAADvLA-------En~~lTyk~L~~Yl 348 (459)
T KOG4340|consen 286 MNM-DARPTEGFEKLQFLLQQNP---------FPPETFANLLLLYCKNEYFDLAADVLA-------ENAHLTYKFLTPYL 348 (459)
T ss_pred hcc-cCCccccHHHHHHHHhcCC---------CChHHHHHHHHHHhhhHHHhHHHHHHh-------hCcchhHHHhhHHH
Confidence 443 3455555555555554421 123566677777887766666555443 22111 11112222
Q ss_pred HHHHHHH-HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH-HHHHHh-----hCCHHHHHHHHHHHHHHHHHHh
Q 007930 412 AQMGVML-YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM-GLACLQ-----LYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 412 ~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~-----~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
+++-..+ ...-..++|.+-+......+. .-+..+ ..+... ......|++-|+++++++
T Consensus 349 y~LLdaLIt~qT~pEea~KKL~~La~~l~-----------~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---- 413 (459)
T KOG4340|consen 349 YDLLDALITCQTAPEEAFKKLDGLAGMLT-----------EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---- 413 (459)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----
Confidence 2333322 233455666555544333211 111111 111111 122345666677776663
Q ss_pred CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 007930 485 GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 485 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 523 (584)
..++...+.+|....++..+.+.|+..++.+.
T Consensus 414 -------LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 414 -------LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred -------HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 34677889999999999999999999998764
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=2.5e-08 Score=81.80 Aligned_cols=206 Identities=13% Similarity=0.034 Sum_probs=139.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH
Q 007930 257 DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR 336 (584)
Q Consensus 257 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 336 (584)
+.++-+++....+.......-.++...++-.+..+....|+.+-|..++++.... .|....+...-|..+..
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------fp~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------FPGSKRVGKLKAMLLEA 98 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHH
Confidence 3444455554444333332234555666677777777888888888888776555 35555666667777888
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 007930 337 IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGV 416 (584)
Q Consensus 337 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 416 (584)
.|++++|+++|+..++-. |....++-..--+...+|+.-+|++.+..-++.+... ..+|..++.
T Consensus 99 ~~~~~~A~e~y~~lL~dd---------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------~EAW~eLae 162 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD---------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------QEAWHELAE 162 (289)
T ss_pred hhchhhHHHHHHHHhccC---------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------HHHHHHHHH
Confidence 888888888888776542 2223344455556667787778888888777777665 567778888
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHhCCCCCchHH
Q 007930 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY---RINEATELFEEARGVLEQECGSCHLDTLG 493 (584)
Q Consensus 417 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 493 (584)
+|...|+|++|.-++++.+-+ .|.....+..+|.+++-+| +++-|.++|.+++++ .+....
T Consensus 163 iY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~r 226 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNLR 226 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhHH
Confidence 888888888888888888763 4555667777777777665 566788888888887 555555
Q ss_pred HHHHHHHHH
Q 007930 494 VYSNLAATY 502 (584)
Q Consensus 494 ~~~~la~~~ 502 (584)
+++.+-.+.
T Consensus 227 al~GI~lc~ 235 (289)
T KOG3060|consen 227 ALFGIYLCG 235 (289)
T ss_pred HHHHHHHHH
Confidence 555554444
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=5.6e-09 Score=98.41 Aligned_cols=251 Identities=17% Similarity=0.131 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHHHHHhhcC----------CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhH
Q 007930 88 PNKALDYAIRASKSFERFSG----------SGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAK 157 (584)
Q Consensus 88 ~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (584)
.+++..-.+.++..++.... ...-|.....-..++..+...|-...|+..|++.-
T Consensus 361 veR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Erle--------------- 425 (777)
T KOG1128|consen 361 VERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------------- 425 (777)
T ss_pred hhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------------
Confidence 56666666666554443211 11123445566689999999999999999998742
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC
Q 007930 158 FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA 237 (584)
Q Consensus 158 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 237 (584)
.+-....||...|+..+|..+..+-++. +..+..|..+|.+... -.+|+++.++.....
T Consensus 426 --mw~~vi~CY~~lg~~~kaeei~~q~lek---------~~d~~lyc~LGDv~~d-------~s~yEkawElsn~~s--- 484 (777)
T KOG1128|consen 426 --MWDPVILCYLLLGQHGKAEEINRQELEK---------DPDPRLYCLLGDVLHD-------PSLYEKAWELSNYIS--- 484 (777)
T ss_pred --HHHHHHHHHHHhcccchHHHHHHHHhcC---------CCcchhHHHhhhhccC-------hHHHHHHHHHhhhhh---
Confidence 3666788999999999998887766652 3445566666665554 455556655554332
Q ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc
Q 007930 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG 317 (584)
Q Consensus 238 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 317 (584)
+.+...+|......++|.++.++++.++.+ .+.....|+.+|.+..+.+++..|...|..++.+
T Consensus 485 ----arA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL------ 548 (777)
T KOG1128|consen 485 ----ARAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------ 548 (777)
T ss_pred ----HHHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc------
Confidence 234566677777789999999999998875 7888899999999999999999999999999998
Q ss_pred CCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 318 EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 318 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
.|+...++++++..|...|+-.+|...+.++++...+ ...+|.|...+..+.|.+++|++.+.+.+.+.
T Consensus 549 --~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---------~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 549 --EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---------HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred --CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---------CCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999999999987533 24677788888899999999999999998887
Q ss_pred HhCC
Q 007930 398 EDTP 401 (584)
Q Consensus 398 ~~~~ 401 (584)
....
T Consensus 618 ~~~~ 621 (777)
T KOG1128|consen 618 KKYK 621 (777)
T ss_pred hhcc
Confidence 6654
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.29 E-value=9.4e-10 Score=92.07 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=106.8
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA 459 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (584)
.++.++++..++++++..++. ...+..+|.+|...|++++|+..|++++.+ .+....++..+|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~-------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 567788899999999887776 678899999999999999999999999996 34457889999997
Q ss_pred H-HhhCC--HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 460 C-LQLYR--INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 460 ~-~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+ ...|+ +++|...++++++. +|....++..+|.++...|++++|+.+|++++++
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5 67777 59999999999999 8999999999999999999999999999999997
No 119
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=5.2e-08 Score=93.14 Aligned_cols=337 Identities=15% Similarity=0.111 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHH--------HHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 007930 116 MSLHMLAAIYCSLGRFEEAVPVLE--------RSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEI 187 (584)
Q Consensus 116 ~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 187 (584)
..|.+++....+..+.+-|.-++- +|+...... ++.. -...+.....+|..++|...|+++-..
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~--~~e~------eakvAvLAieLgMlEeA~~lYr~ckR~ 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN--GEED------EAKVAVLAIELGMLEEALILYRQCKRY 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC--Ccch------hhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345677777777766666655442 222222111 1111 123445566778888888888776443
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 188 QIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVL 267 (584)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~ 267 (584)
-.|-..|...|.+++|.++.+.- +....-..|++.+..+...++.+.|+++|++
T Consensus 830 ----------------DLlNKlyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 830 ----------------DLLNKLYQSQGMWSEAFEIAETK----------DRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred ----------------HHHHHHHHhcccHHHHHHHHhhc----------cceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 23455677888888887765432 2223334588899999999999999999987
Q ss_pred HH----HHHHHcCCcch----------HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHH
Q 007930 268 AS----MVMIANGQENE----------VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADL 333 (584)
Q Consensus 268 a~----~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 333 (584)
+- ++.+-..+.|. ....|...|..+...|+.+.|+.+|..|-+.+. +..+
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs----------------~VrI 947 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFS----------------MVRI 947 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhh----------------heee
Confidence 52 22221112221 124566778888888888888888887765432 2223
Q ss_pred HHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------HHHHhCCCCcccH
Q 007930 334 YYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM------KLLEDTPGYHSTI 407 (584)
Q Consensus 334 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~------~~~~~~~~~~~~~ 407 (584)
...+|+.++|-...++.-. ..+.+.+|..|...|++.+|+.+|.+|. .++.++ +-...+
T Consensus 948 ~C~qGk~~kAa~iA~esgd--------------~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L 1012 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESGD--------------KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRL 1012 (1416)
T ss_pred EeeccCchHHHHHHHhccc--------------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHH
Confidence 3333444433333222111 1233344444444444444444443322 222221 100000
Q ss_pred H---------------HHH-------HHHHHHHHHhccHHHHHHHHHH-----HHHHH-HHcCCCCCchHHHHHHHHHHH
Q 007930 408 A---------------GIE-------AQMGVMLYVVGRYGEARSSFES-----AVVKL-RASGESKSAFFGIVLNQMGLA 459 (584)
Q Consensus 408 ~---------------~~~-------~~l~~~~~~~g~~~~A~~~~~~-----a~~~~-~~~~~~~~~~~~~~~~~l~~~ 459 (584)
+ ..| ..-..+|.+.|.+.+|+++.=+ ++++. +.+.... .+..+..-+..
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s---Dp~ll~RcadF 1089 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS---DPKLLRRCADF 1089 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC---CHHHHHHHHHH
Confidence 0 000 0112344555555555554221 23332 2333323 24677788889
Q ss_pred HHhhCCHHHHHHHHHH------HHHHHHHHh-----------CC------CCCchHHHHHHHHHHHHHcCChHHHHHHHH
Q 007930 460 CLQLYRINEATELFEE------ARGVLEQEC-----------GS------CHLDTLGVYSNLAATYDALGRVEDAIEILE 516 (584)
Q Consensus 460 ~~~~g~~~~A~~~~~~------a~~~~~~~~-----------~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 516 (584)
+....+|++|..++-. |+.++.... .+ +......++..+|.++.++|.|..|-+-|.
T Consensus 1090 F~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1090 FENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 9999999999887644 444443211 11 112345688999999999999999999998
Q ss_pred HHHH
Q 007930 517 YILK 520 (584)
Q Consensus 517 ~a~~ 520 (584)
+|=.
T Consensus 1170 QAGd 1173 (1416)
T KOG3617|consen 1170 QAGD 1173 (1416)
T ss_pred hhhh
Confidence 7743
No 120
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=6.7e-09 Score=85.06 Aligned_cols=195 Identities=19% Similarity=0.148 Sum_probs=134.9
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Q 007930 339 KLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418 (584)
Q Consensus 339 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (584)
+.++-+++....+..... +...++....+-.+..+....|+.+-|..++++....++.. ..+...-|..+
T Consensus 27 nseevv~l~~~~~~~~k~---~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S-------~RV~~lkam~l 96 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKS---GALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS-------KRVGKLKAMLL 96 (289)
T ss_pred CHHHHHHHHHHHHHHhhh---cccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC-------hhHHHHHHHHH
Confidence 445555555555554433 11223344566666677777788888888887766655443 23334567777
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
...|++++|+++|+..++ .+|....++...-.+...+|+.-+|++.+...++. .+...++|..+
T Consensus 97 Ea~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~eL 160 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHEL 160 (289)
T ss_pred HHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHHH
Confidence 888888888888888776 34444555555556667778888888888888877 56667888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHH---HHHHHHHHHHhhhhhh
Q 007930 499 AATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARN---RKGKSLENLLDSNAYR 568 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~l~~~~~~~~~~ 568 (584)
+.+|...|+|++|.-++++.+-+ .|.+.....++|+++.-+|..+. |. ++++.+++.++.+
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~ar-kyy~~alkl~~~~ 224 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELAR-KYYERALKLNPKN 224 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhChHh
Confidence 88888888888888888888877 78888888888888887775433 33 7777788777743
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.27 E-value=1.5e-10 Score=89.04 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
......+.+|..+...|++++|...|+-...+ +|.....+++||.++..+|++++|+..|.++..+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------ 98 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------ 98 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34577889999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 528 TANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 528 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
+|+++..++++|.++...|+.+.|. +.++.++....
T Consensus 99 --~~ddp~~~~~ag~c~L~lG~~~~A~-~aF~~Ai~~~~ 134 (157)
T PRK15363 99 --KIDAPQAPWAAAECYLACDNVCYAI-KALKAVVRICG 134 (157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhc
Confidence 8999999999999999999999999 88998886653
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=3.9e-10 Score=86.72 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
.....+.+|..+...|++++|...|+-...+ .+.....|++||.++..+|++++|+..|.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------- 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------- 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence 3556678999999999999999999998885 5567899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEK 537 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~ 537 (584)
+|+.+..++++|.|+...|+.+.|.+.|+.++..+. .+|......
T Consensus 99 -~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~ 143 (157)
T PRK15363 99 -KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILR 143 (157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHH
Confidence 888889999999999999999999999999999863 356554443
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.26 E-value=1.4e-09 Score=89.86 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=141.9
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
..|....+ .+++..+...|+-+.+..+..++... ++.....+..+|......|++.+|+..+.++.....
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p- 131 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP- 131 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-
Confidence 46666666 88999999999999999888886654 566667777799999999999999999999998753
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
.....++.+|.+|.+.|++++|...|.+++++.+.. ..+..++|..+.-.|+++.|..++..+..
T Consensus 132 --------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-------p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 132 --------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-------PSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred --------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------chhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 347899999999999999999999999999998776 46778999999999999999999999887
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
.+.....+..+++.+....|++++|.....+-
T Consensus 197 --------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 197 --------SPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred --------CCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 23334678889999999999999998776543
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=5.5e-10 Score=104.99 Aligned_cols=224 Identities=17% Similarity=0.139 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
.....++..+...|-...|+..+++. ..+.....||...|+..+|.....+-++ .+.
T Consensus 399 q~q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~~q~le---------k~~ 455 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEINRQELE---------KDP 455 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHHHHHhc---------CCC
Confidence 34567889999999999999998863 3456778899999999999888777655 245
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
.+..|..+|.+..... +|+++.++.... .+.+...+|......++|.++.++++.++++.+-.
T Consensus 456 d~~lyc~LGDv~~d~s-------~yEkawElsn~~--------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-- 518 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPS-------LYEKAWELSNYI--------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-- 518 (777)
T ss_pred cchhHHHhhhhccChH-------HHHHHHHHhhhh--------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc--
Confidence 5566666666655544 455555554321 23455667777777899999999999999886655
Q ss_pred CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
..+|+.+|.+..+.++++.|..+|..++.+ .|....+|++++..|...|+..+|...+++|++.
T Consensus 519 -----~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc--- 582 (777)
T KOG1128|consen 519 -----LGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC--- 582 (777)
T ss_pred -----hhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc---
Confidence 568889999999999999999999999984 5567899999999999999999999999999997
Q ss_pred HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 483 ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
+.....++.|.-.+....|.+++|++.|.+.+.+.+....
T Consensus 583 -----n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 583 -----NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred -----CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 5566678889999999999999999999999998665443
No 125
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.9e-10 Score=96.89 Aligned_cols=120 Identities=23% Similarity=0.233 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+..-|.-+.+.++|.+|+..|.+|+.+ .|..+..|.+.+.+|.++|+++.|++-++.++.+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------- 144 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------- 144 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------
Confidence 455567788889999999999999999995 5556789999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRAR 551 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (584)
+|....+|..||.+|..+|++++|++.|++++++ +|++.....+|..+-..++...
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999 8998888888888877777665
No 126
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.24 E-value=4.8e-11 Score=83.65 Aligned_cols=77 Identities=29% Similarity=0.379 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
+..+.++.++|.+|..+|++++|+.+|++++++ .+..++.++..+.++.++|.++..+|++++|+++++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 456889999999999999999999999999999 66667777888999999999999999999999999999998653
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.23 E-value=7.9e-10 Score=91.35 Aligned_cols=157 Identities=20% Similarity=0.168 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
..+ .+++..+...|+-+.+..+..++....+.. ...+..+|......|++.+|+..+.++... .
T Consensus 67 ~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-------~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~ 130 (257)
T COG5010 67 LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-------RELLAAQGKNQIRNGNFGEAVSVLRKAARL--------A 130 (257)
T ss_pred HHH-HHHHHHHHhcccccchHHHHhhhhccCccc-------HHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------C
Confidence 445 788888999999888888877765443332 345555899999999999999999999984 4
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
|....++..+|.+|.+.|++++|..-|.+++++ .+....+..++|..|.-.|+++.|..++..+...
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~----- 197 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS----- 197 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-----
Confidence 456789999999999999999999999999999 6777789999999999999999999999999885
Q ss_pred CCCChhHHHHHHHHHHHHHHhchHHHHHH
Q 007930 527 GTANPDIDDEKERLAELLKETGRARNRKG 555 (584)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (584)
-+....+..+|+.+...+|++.+|+.
T Consensus 198 ---~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 198 ---PAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ---CCCchHHHHHHHHHHhhcCChHHHHh
Confidence 45578889999999999999999983
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.21 E-value=4.6e-10 Score=88.93 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=98.6
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
++........+|..+...|++++|...+++++.. +|....++..+|.++...|++++|..++++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 4445678899999999999999999999999998 7888899999999999999999999999999997
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|.....++.+|.++...|++++|. ..++.+++..|+...
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESAL-KALDLAIEICGENPE 120 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhccccch
Confidence 7889999999999999999999999 888999988877655
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.20 E-value=6e-10 Score=88.27 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH
Q 007930 389 LLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE 468 (584)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (584)
.+++++...+.. ......+|..+...|++++|...+++++.. .+....++..+|.++...|++++
T Consensus 5 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 5 TLKDLLGLDSEQ-------LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hHHHHHcCChhh-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHH
Confidence 455555554433 566778999999999999999999999885 33456889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 469 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
|..++++++.+ +|.....++.+|.++...|++++|+..|++++++
T Consensus 70 A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 70 AIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999998 7888899999999999999999999999999998
No 130
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.19 E-value=1.7e-10 Score=80.81 Aligned_cols=77 Identities=30% Similarity=0.556 Sum_probs=68.4
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
+|..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++..+.++.++|.++..+|++++|++++++++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 3567889999999999999999999999999999 5555666778899999999999999999999999999999864
No 131
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.18 E-value=1.7e-09 Score=88.87 Aligned_cols=118 Identities=16% Similarity=0.051 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
.+.++..+|.++...|++++|+..|++++.+.. .+.....++.++|.++...|++++|+.++++++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------- 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------- 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 467788999999999999999999999998632 22334678999999999999999999999999998
Q ss_pred CCCchHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 007930 487 CHLDTLGVYSNLAATYD-------ALGRVEDAIEILEYILKVREEKLGTANPDIDDEK 537 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~ 537 (584)
+|.....+.++|.++. ..|++++|...+.+++..+++.++.+++....+.
T Consensus 102 -~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~ 158 (168)
T CHL00033 102 -NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQ 158 (168)
T ss_pred -CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence 6776777778887777 8999999999999999999999887765554433
No 132
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.17 E-value=9.4e-06 Score=81.55 Aligned_cols=433 Identities=13% Similarity=0.052 Sum_probs=266.4
Q ss_pred hhHHHHHHHHHHHHHH-hcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 007930 111 ELELVMSLHMLAAIYC-SLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI 189 (584)
Q Consensus 111 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 189 (584)
....+.+...+|.+++ ...+++.|..++++++.+... ..-....+.+.+.++.++...+... |...+++.++..+
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 3456788889999988 689999999999999998865 3333344566777899999988887 9999999999876
Q ss_pred HHhCCCChHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 190 EALGDSDPRVAETCRYL-AEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA 268 (584)
Q Consensus 190 ~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a 268 (584)
.. .+.....++..+ ...+...+++..|++.++.........++ ......+....+.+....+..+++++.++++
T Consensus 131 ~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d--~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 131 TY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD--PAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred cc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 52 112222233333 33333347999999999999998875553 3344445556677777888889999999988
Q ss_pred HHHHHHc--C--CcchHHHHHHHHHH--HHHHcCChhHHHHHHHHHHHHHHHhhcCC-------c---------------
Q 007930 269 SMVMIAN--G--QENEVAAIDVSIGN--IYMSLCRFDEAIFSYQKGLTVFKATRGED-------H--------------- 320 (584)
Q Consensus 269 ~~~~~~~--~--~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~--------------- 320 (584)
....... . .......++..+-. ++...|++..+...+++.-+......... +
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 6665543 1 12333334444433 44577887788777666555544432210 0
Q ss_pred --c----------cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC-CCCC--h--------------HHHHHHHH
Q 007930 321 --L----------SVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA-PATA--P--------------EEIANGLT 371 (584)
Q Consensus 321 --~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~--~--------------~~~~~~~~ 371 (584)
+ ..+.++..-|......+..++|.++++++++..++.. ..+. . .....+..
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~ 365 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLF 365 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHH
Confidence 0 0122333445566667777899999999999877643 0000 0 01123344
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC--cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc---CCCCC
Q 007930 372 EISAIYEALNEHEEALKLLQKAMKLLEDTPGY--HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS---GESKS 446 (584)
Q Consensus 372 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~ 446 (584)
.++.+..-.+++..|....+.+.......+.. ......+++..|..+...|+.+.|..+|.+..-..... .....
T Consensus 366 y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~ 445 (608)
T PF10345_consen 366 YQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR 445 (608)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence 56677778899999999999888877665331 23345677788999999999999999999555333222 11123
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG-SCHLDTLGVYSNLAATYD--ALGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~~ 523 (584)
+....+..++..++...+.-.....-+.+.++..+.... ..+.....++..+-.++. ..-...++...+.++++..-
T Consensus 446 El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~ 525 (608)
T PF10345_consen 446 ELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMAN 525 (608)
T ss_pred HHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH
Confidence 334555666777777665544322222333332211111 111222222222222222 12234589999999999872
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 524 EKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+..+ .+--..-++..++..++ .|+..+..
T Consensus 526 ~~~~-n~~l~~~~L~lm~~~lf-~~~~~e~~ 554 (608)
T PF10345_consen 526 NKLG-NSQLLAILLNLMGHRLF-EGDVGEQA 554 (608)
T ss_pred Hhhc-cchHHHHHHHHHHHHHH-cCCHHHHH
Confidence 2222 12333445666666666 77777766
No 133
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.17 E-value=9.1e-10 Score=97.65 Aligned_cols=262 Identities=19% Similarity=0.108 Sum_probs=162.7
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
.-++..|+|..++.-++. ...+..........+.+++..+|+++..+.-... . .+....+...
T Consensus 9 rn~fy~G~Y~~~i~e~~~------~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~-~~~~l~av~~ 71 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASL------KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------S-SSPELQAVRL 71 (290)
T ss_dssp HHHHCTT-HHHHCHHHHC------HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------T-SSCCCHHHHH
T ss_pred HHHHHhhhHHHHHHHhhc------cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------C-CChhHHHHHH
Confidence 345667888888865541 1123445566677788899999988765533321 1 1222334455
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHH
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 409 (584)
++..+...++.+.++.-+++. .. ..............|.++...|++++|++.+.+. + . ..
T Consensus 72 la~y~~~~~~~e~~l~~l~~~---~~----~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~-~---lE 132 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKEL---LA----DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------G-S---LE 132 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHC---CC----TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------T-C---HH
T ss_pred HHHHHhCccchHHHHHHHHHH---HH----hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------C-c---cc
Confidence 555554434444444333222 11 1111112234556677888889999998887653 1 1 23
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHHhCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY--RINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+......++...++++.|.+.++.+.++ . .+...+....+++....| ++.+|...|++..+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~----eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------- 196 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI----D----EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------- 196 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC----S----CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----C----CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------
Confidence 4445678899999999998888775442 2 222222333333444444 688898888885443
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
.+....++..++.++..+|++++|...+++++.. +|.+++++.+++.+...+|+..++...++..+...+|+
T Consensus 197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 3456678899999999999999999999998875 78888999999999999999977666888888877776
Q ss_pred hhHH
Q 007930 568 RVKK 571 (584)
Q Consensus 568 ~~~~ 571 (584)
.+..
T Consensus 269 h~~~ 272 (290)
T PF04733_consen 269 HPLV 272 (290)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 5543
No 134
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.16 E-value=1.2e-08 Score=103.11 Aligned_cols=432 Identities=14% Similarity=0.096 Sum_probs=280.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhH
Q 007930 78 ARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAK 157 (584)
Q Consensus 78 a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (584)
+......++ +.+|...=+.++++.+... +...|+....+..++..++......+|+.+-.+.+.......+..++...
T Consensus 672 ~v~~~~t~~-~~~a~~~~qk~~d~~Erll-~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~ 749 (1236)
T KOG1839|consen 672 AVVLYHTED-FNQAAIQQQKVLDINERLL-GLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTA 749 (1236)
T ss_pred ceEecCccc-cchhhhhhHhHHHHHHHHh-ccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCcccc
Confidence 444556666 6778888888998888877 56678889888888888888888999999999999988766666555443
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHh-
Q 007930 158 FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQ---AMQFDEAENLCKKILEIHREH- 233 (584)
Q Consensus 158 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~- 233 (584)
..+.+.. ....+--+-+.+....+++-..+..+.++-..+.. ..+...+.. ..+......-.-++.+.....
T Consensus 750 -a~~~~v~--l~~l~~~ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~ 825 (1236)
T KOG1839|consen 750 -ATYINVA--LMELGVGEIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDA 825 (1236)
T ss_pred -chhhhHH--HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhh
Confidence 1111111 12222226677777777777766666555444444 333333222 222222222111121111000
Q ss_pred --CCC--CCHHHH------HHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhH--
Q 007930 234 --GHS--ASLEEA------ADRRLMALVYE-AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDE-- 300 (584)
Q Consensus 234 --~~~--~~~~~a------~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-- 300 (584)
+.+ +....+ ..+..-..... ..+.+.......... ....|...-
T Consensus 826 ~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i-----------------------~~~~~~~~~~~ 882 (1236)
T KOG1839|consen 826 AAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETI-----------------------LLKNGKSKIAV 882 (1236)
T ss_pred ccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHH-----------------------hhhcccchhHH
Confidence 000 000000 00000000000 000111111111111 111111000
Q ss_pred -HHHHHHHHHHHHHHhhc-----------------------CCcc--cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 301 -AIFSYQKGLTVFKATRG-----------------------EDHL--SVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 301 -A~~~~~~al~~~~~~~~-----------------------~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
....+..-+....+... ...| ..+.-....+......|.+.+|.+ ..+++...
T Consensus 883 ~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~ 961 (1236)
T KOG1839|consen 883 EKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLL 961 (1236)
T ss_pred HHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHH
Confidence 00001111110000000 0012 223334455666777888888888 77777777
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG-YHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
...+ +..++..+..+..++.++...|+.++|+..-.++.-+.....+ +++.....+.+++...+..++...|...+.+
T Consensus 962 ~~v~-~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~r 1040 (1236)
T KOG1839|consen 962 NNVM-GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNR 1040 (1236)
T ss_pred HHhh-hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHH
Confidence 6543 6678899999999999999999999999999999988887777 5677788888999999999999999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 007930 434 AVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE 513 (584)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 513 (584)
+..+..-..++.+|..+.+..+++.++...++++.|+.+.+.|+...+.+.++..-..+..+..+++++..++++..|..
T Consensus 1041 a~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1041 ALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred HHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 99987766555677778888999999999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
..+....++...+|++|+.+..+...+
T Consensus 1121 ~ek~t~~iy~~qlg~~hsrt~~S~~~~ 1147 (1236)
T KOG1839|consen 1121 HEKVTYGIYKEQLGPDHSRTKESSEWL 1147 (1236)
T ss_pred HHhhHHHHHHHhhCCCcccchhhHHHH
Confidence 999999999999999998876654433
No 135
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=7.8e-10 Score=93.23 Aligned_cols=122 Identities=22% Similarity=0.244 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC
Q 007930 365 EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES 444 (584)
Q Consensus 365 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 444 (584)
..+..+-.-|.-+.+.++|.+|+..|.+||++.+.. +..|.+.+.+|.++|.++.|++.++.++.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i------- 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESALSI------- 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence 346667778888999999999999999999998877 678889999999999999999999999995
Q ss_pred CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChH
Q 007930 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVE 509 (584)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 509 (584)
++....+|..||.+|..+|++++|++.|++++++ +|+......+|..+-..++...
T Consensus 145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 6678899999999999999999999999999999 8888888888888877777666
No 136
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.14 E-value=1e-08 Score=86.76 Aligned_cols=183 Identities=18% Similarity=0.254 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
...++..|..++..|+|.+|+..|++++...+. ++... .+.+.+|.+++..|++++|+..+++.+...+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-----s~~a~-~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP----- 73 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-----SPYAP-QAQLMLAYAYYKQGDYEEAIAAYERFIKLYP----- 73 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-----STTHH-HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----ChHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----
Confidence 567788999999999999999999999988633 33222 5688999999999999999999999998864
Q ss_pred CChHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHH
Q 007930 195 SDPRVAETCRYLAEAHIQAM-----------QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALE 263 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~ 263 (584)
+++....+++.+|.+++... ...+|+..|+..++..|+..-. .+|..
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~----------------------~~A~~ 131 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA----------------------EEAKK 131 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH----------------------HHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH----------------------HHHHH
Confidence 36788899999999876653 2347788888888777755421 11211
Q ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHH
Q 007930 264 HLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRES 343 (584)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 343 (584)
.+... ....+.--..+|..|.+.|.+..|+..++.+++.+. +.+....++..++..|..+|..+.|
T Consensus 132 ~l~~l---------~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 132 RLAEL---------RNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHhCChHHH
Confidence 11111 112233346688999999999999999999988743 3456667888999999999988854
Q ss_pred H
Q 007930 344 K 344 (584)
Q Consensus 344 ~ 344 (584)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 137
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.14 E-value=5.3e-08 Score=82.40 Aligned_cols=183 Identities=14% Similarity=0.103 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
...++..|..++..|++.+|+..|++.+..+. ..+....+.+.+|.++...|++++|+..+++.+.....
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-----~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----- 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYP-----NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----- 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-----TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----
Confidence 45567778888888888888888888877642 35677788888888888888888888888888887644
Q ss_pred ChHHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEALN-----------EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
++....+++.+|.++..+. ...+|+..|+..+...|+.. -..+|...
T Consensus 75 -~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~---------------------y~~~A~~~ 132 (203)
T PF13525_consen 75 -SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE---------------------YAEEAKKR 132 (203)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST---------------------THHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch---------------------HHHHHHHH
Confidence 3456677777777765543 34477777777777776651 11223333
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
+..+.+. .+.--..+|..|...|.+..|+..++.+++.+ |+.+....++..++.+|..+|..+.
T Consensus 133 l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 133 LAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHH
Confidence 3322221 23344567888999999999999999988873 3455566788889999999998885
Q ss_pred HH
Q 007930 511 AI 512 (584)
Q Consensus 511 A~ 512 (584)
|.
T Consensus 197 a~ 198 (203)
T PF13525_consen 197 AD 198 (203)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 138
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=3.6e-07 Score=74.58 Aligned_cols=224 Identities=13% Similarity=0.046 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
...+..|..-+..|....+|++|...+.+|.+..+........+..+...+.+......+.++..+++++..++.+.+
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-- 105 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-- 105 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--
Confidence 334555667777888889999999999999988887777778888999999999999999999999999999999887
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.|..+..-...+--....-++++|+.+|++++.+.+. ++........+...+.++....++++|-..+.+-.....
T Consensus 106 -spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~---~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 106 -SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE---DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred -CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH
Confidence 4555554445555556678899999999999999877 444455567788889999999999999888887666554
Q ss_pred hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
.. .........+.....+|+...+|..|..+++...++ +....+....++.+|-..| ..|+.++....+.
T Consensus 182 ~~-~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 182 KC-DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HH-hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 43 223333444555566777788999999999887664 2222333455666665544 5577777665543
No 139
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.13 E-value=3.9e-06 Score=81.99 Aligned_cols=343 Identities=12% Similarity=-0.002 Sum_probs=218.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
++...+.+...+.-+...|. +.+|+.+.-.|-+ ....+..+...+.-.+..++..--. ..++..+
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~-~~eAI~hAlaA~d----------~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP 407 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGL-PSEAIDHALAAGD----------PEMAADLLEQLEWQLFNGSELSLLL----AWLKALP 407 (894)
T ss_pred CCchhHHHHHHHHHHHhCCC-hHHHHHHHHhCCC----------HHHHHHHHHhhhhhhhcccchHHHH----HHHHhCC
Confidence 44445666666666667777 8888876554432 1122333444455555555543222 2222221
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL-GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
...-..+| ......++......++.+|.....++........ +......+......|.+....|++++|+++.+.
T Consensus 408 ~~~l~~~P----~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~ 483 (894)
T COG2909 408 AELLASTP----RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARL 483 (894)
T ss_pred HHHHhhCc----hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11111122 2245567778888999999998888766533210 001122345555667888999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHH
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY 305 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (584)
++...+.... ...+.++..+|.+..-.|++++|..+..++.+..+..+.......+....+.++..+|+...|. -
T Consensus 484 al~~L~~~~~---~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~--~ 558 (894)
T COG2909 484 ALVQLPEAAY---RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE--Q 558 (894)
T ss_pred HHHhcccccc---hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH--H
Confidence 9998877653 3345678889999999999999999999999999988888888888889999999999433332 2
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHH
Q 007930 306 QKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEE 385 (584)
Q Consensus 306 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 385 (584)
.++............+.........+.++...-+++.+..-....+++.... ...+....-.++.|+.++...|+.++
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~--~~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY--TPQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc--ccchhHHHHHHHHHHHHHHhcCCHHH
Confidence 2232222222222233333333334444444444777777777777765442 22222333344689999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 386 ALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 386 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
|...+.+...............+.++.........+|+..+|.....+..
T Consensus 637 A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 637 ALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 99999999888776533333445555555566678899999988877743
No 140
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.11 E-value=7.9e-08 Score=83.25 Aligned_cols=188 Identities=9% Similarity=0.037 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
...++..|..++..|+|++|+..|++++...+ ..+.. ..+.+.+|.+++..+++++|+..+++.++.. +
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-----~s~~a-~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYP-----FGPYS-QQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CChHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 44567789999999999999999999988753 33322 2558899999999999999999999999985 4
Q ss_pred CChHHHHHHHHHHHHHHHhC---------------C---HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007930 195 SDPRVAETCRYLAEAHIQAM---------------Q---FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKA 256 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g 256 (584)
++|....+++.+|.++...+ + ..+|+..+++.++..|+.. ....+...+..+
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~-----ya~~A~~rl~~l----- 170 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ-----YTTDATKRLVFL----- 170 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-----hHHHHHHHHHHH-----
Confidence 47888999999998865543 1 2467777888887776543 111111111111
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH
Q 007930 257 DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR 336 (584)
Q Consensus 257 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 336 (584)
....+.--..+|..|.+.|.|..|+.-++.+++.+. +.+....++..++..|..
T Consensus 171 ---------------------~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 171 ---------------------KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQ 224 (243)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHH
Confidence 112223335788899999999999999999888753 356788899999999999
Q ss_pred cccHHHHHHHHHH
Q 007930 337 IGKLRESKSYCEN 349 (584)
Q Consensus 337 ~g~~~~A~~~~~~ 349 (584)
.|..++|......
T Consensus 225 lg~~~~a~~~~~~ 237 (243)
T PRK10866 225 LQLNAQADKVAKI 237 (243)
T ss_pred cCChHHHHHHHHH
Confidence 9999998776543
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=3e-09 Score=94.35 Aligned_cols=254 Identities=19% Similarity=0.129 Sum_probs=158.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 208 EAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
.-++..|+|..++.-++ +. . . ...........+.+.+..+|+++..+.-+.. . ..+. ..+...
T Consensus 9 rn~fy~G~Y~~~i~e~~--~~--~--~--~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~-~~~~-l~av~~ 71 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS--LK--S--F--SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------S-SSPE-LQAVRL 71 (290)
T ss_dssp HHHHCTT-HHHHCHHHH--CH--T--S--TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------T-SSCC-CHHHHH
T ss_pred HHHHHhhhHHHHHHHhh--cc--C--C--CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------C-CChh-HHHHHH
Confidence 34567899988886555 11 1 1 2233445577788899999998876654432 1 1222 223344
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 007930 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367 (584)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 367 (584)
++..+...++.+.++..++..+ ...............|.++...|++++|++.+.+. ...
T Consensus 72 la~y~~~~~~~e~~l~~l~~~~------~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------------~~l 131 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKELL------ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------------GSL 131 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHCC------CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------------TCH
T ss_pred HHHHHhCccchHHHHHHHHHHH------HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------------Ccc
Confidence 5554444334444433332211 11112234456667788888899999998877653 113
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHcCCCC
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG--RYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
+.......++..+++++.|.+.++.+.+. .+.. .-+....+++....| ++.+|...|++..+.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------- 196 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI-----DEDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------- 196 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------
Confidence 55566778999999999999888775433 2222 222223344444555 588999999886542
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV-EDAIEILEYILKV 521 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~ 521 (584)
.+....+++.++.++..+|++++|...+++++.. +|..+.++.+++.+...+|+. +.+.+++.+....
T Consensus 197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 1223577899999999999999999999999876 788889999999999999999 5566666665554
No 142
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=4.6e-07 Score=74.00 Aligned_cols=222 Identities=14% Similarity=0.082 Sum_probs=170.8
Q ss_pred CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 319 DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 319 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
+....+..|..-+..|....+|++|..++.++.+..+. .......+..+...+.+......+.++..+++++..++.
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn---nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN---NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455666777788888899999999999999988776 445667788899999999999999999999999999999
Q ss_pred hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
+. |.....+.++..-|. .....+.++|+.+|++++.++...+.. ..-...+...++++....++++|-..+.+-..
T Consensus 103 E~-GspdtAAmaleKAak-~lenv~Pd~AlqlYqralavve~~dr~--~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 103 EC-GSPDTAAMALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRD--QMAFELYGKCSRVLVRLEKFTEAATAFLKEGV 178 (308)
T ss_pred Hh-CCcchHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchH--HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhh
Confidence 88 655555555544343 456678999999999999988764322 22345677788999999999999999988777
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+..+... .+.....+.....+|.-..++..|..+++...++ .+...++...++.+|-..|. .|+.++..
T Consensus 179 ~~~~~~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ayd-~gD~E~~~ 247 (308)
T KOG1585|consen 179 AADKCDA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAYD-EGDIEEIK 247 (308)
T ss_pred HHHHHhh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHhc-cCCHHHHH
Confidence 7666544 4455555666667777788999999999998775 33446777888888887764 66777766
No 143
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.05 E-value=4.2e-09 Score=86.62 Aligned_cols=121 Identities=19% Similarity=0.077 Sum_probs=96.4
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
......++..+|.++...|++++|+..|++++.+... +.....++.++|.++...|++++|+.++++++.+.+.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3456788899999999999999999999999988422 3345678999999999999999999999999988665
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
.......++.++..+|..+...|++++|...+++++..++......+
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 53334444555666666666999999999999999888776644444
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.8e-07 Score=76.46 Aligned_cols=259 Identities=19% Similarity=0.146 Sum_probs=168.8
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
+-++..|+|..++....+.. ..+........+.+.|..+|.+...+.-...+ ......+...
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~-------~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~-----------~~~~lqAvr~ 77 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFS-------SSKTDVELDVYMYRAYLALGQYQIVISEIKEG-----------KATPLQAVRL 77 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhc-------cccchhHHHHHHHHHHHHcccccccccccccc-----------cCChHHHHHH
Confidence 34556788877776655431 12244555667788888888876544332221 1122223334
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHH
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 409 (584)
++.....-++.++-+.-..+-+.... ..........-|.++...|++++|+........+ .
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~~~-------~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------------E 138 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVADST-------DGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------------E 138 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHhhc-------cchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------------H
Confidence 44444444444433333333222211 1112234445577888999999999887763322 1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHHHHHhC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL----YRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
+...-..++.++.+++-|...++++.++-. -.++..||..+... +++.+|.-+|++.-+.
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ide----------d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------ 202 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDE----------DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------ 202 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccch----------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------
Confidence 222345677888888888888888877522 24556666666543 4677777777766553
Q ss_pred CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
.+.....+...+.|...+|++++|...++.++.. ++.+++++.|+..+-..+|...++....+..+...+
T Consensus 203 --~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 203 --TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred --cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 4455678889999999999999999999999986 788899999999999999999999888888888888
Q ss_pred hhhhHH
Q 007930 566 AYRVKK 571 (584)
Q Consensus 566 ~~~~~~ 571 (584)
|+.+..
T Consensus 273 p~h~~v 278 (299)
T KOG3081|consen 273 PEHPFV 278 (299)
T ss_pred CcchHH
Confidence 876654
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.05 E-value=5.5e-09 Score=96.55 Aligned_cols=114 Identities=13% Similarity=0.033 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
+...|..++..|++++|+.+|++++.+ .+....++..+|.++...|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 346688899999999999999999985 3445688999999999999999999999999999 888
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
...+++.+|.++..+|++++|+..|++++.+ +|....+...++.+...+.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 7888888888888866663
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.05 E-value=2.2e-07 Score=80.56 Aligned_cols=189 Identities=10% Similarity=0.002 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 360 (584)
....++..|..+...|++++|+..|++++... +..+....+...+|.++...+++++|+..+++.++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---- 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---- 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC----
Confidence 34456778889999999999999999998863 224555667799999999999999999999999999644
Q ss_pred CChHHHHHHHHHHHHHHHHhc---------------C---HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 007930 361 TAPEEIANGLTEISAIYEALN---------------E---HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG 422 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 422 (584)
++....+++.+|.++...+ + ..+|+..|++.++..|+..
T Consensus 102 --~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~--------------------- 158 (243)
T PRK10866 102 --HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ--------------------- 158 (243)
T ss_pred --CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh---------------------
Confidence 4667788888888764443 1 2456677777777666540
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 502 (584)
-..+|...+..+... .+.--..+|..|.+.|.|..|+.-++.+++-+ |+.+...+++..++..|
T Consensus 159 ya~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay 222 (243)
T PRK10866 159 YTTDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY 222 (243)
T ss_pred hHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence 012222222222221 23334478888999999999999999988873 45677788999999999
Q ss_pred HHcCChHHHHHHHHH
Q 007930 503 DALGRVEDAIEILEY 517 (584)
Q Consensus 503 ~~~g~~~~A~~~~~~ 517 (584)
..+|..++|......
T Consensus 223 ~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 223 RQLQLNAQADKVAKI 237 (243)
T ss_pred HHcCChHHHHHHHHH
Confidence 999999998876543
No 147
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.04 E-value=5.4e-08 Score=80.29 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=91.0
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
....+..++.+|..+...|++++|+.+|++++..... ++....++..+|.++...|++++|+.++++++..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---- 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 3444677889999999999999999999999986332 2224578999999999999999999999999998
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHhCCC
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGR-------VEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
+|.....+..+|.++...|+ ++.|+..++++++.+++....+
T Consensus 102 ----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 102 ----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred ----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 77788889999999988765 5666666666666666655543
No 148
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.03 E-value=1.6e-08 Score=83.39 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=91.5
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+..+..++.+|..+...|++++|+.+|++++... ++.+....++..+|.++...|++++|+.++++++.+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---- 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 34457789999999999999999999999999872 223345679999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhch--------------HHHHHHHHHHHHHhhhhhh
Q 007930 526 LGTANPDIDDEKERLAELLKETGR--------------ARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~--------------~~~A~~~~l~~~~~~~~~~ 568 (584)
+|....++..+|.++...|+ +++|. ..++.++..+|+.
T Consensus 102 ----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~-~~~~~a~~~~p~~ 153 (172)
T PRK02603 102 ----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAA-EYWKQAIRLAPNN 153 (172)
T ss_pred ----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHH-HHHHHHHhhCchh
Confidence 78888999999999999887 45566 6667777777765
No 149
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.2e-08 Score=88.51 Aligned_cols=140 Identities=18% Similarity=0.208 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc-------hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA-------FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
....|..|++.|+|..|...|++++..+......+.. ....++.+++.++.++++|.+|+....+++++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---- 286 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---- 286 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc----
Confidence 3457899999999999999999999887643222111 23457899999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
.|....+++..|.++..+|+++.|+..|++++++ .|.+..+...|..+..+..++.+...+.+..++.
T Consensus 287 ----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 287 ----DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred ----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888999999999999999999999999999999 8999999999999999999988886688888876
Q ss_pred hhh
Q 007930 564 SNA 566 (584)
Q Consensus 564 ~~~ 566 (584)
.-+
T Consensus 355 k~~ 357 (397)
T KOG0543|consen 355 KLA 357 (397)
T ss_pred ccc
Confidence 544
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.99 E-value=5.5e-08 Score=77.50 Aligned_cols=134 Identities=21% Similarity=0.211 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
...+..+......++ +..+...+++.+.- .+..+....+...+|.+++..|++++|...|++++... +
T Consensus 12 ~~~y~~~~~~~~~~~-~~~~~~~~~~l~~~------~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~ 79 (145)
T PF09976_consen 12 SALYEQALQALQAGD-PAKAEAAAEQLAKD------YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----P 79 (145)
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----C
Confidence 345566666667787 88887777777664 23345567888899999999999999999999998753 2
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL 227 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 227 (584)
+. .....+.+.++.++...|++++|+..++... +.+....++..+|.++...|++++|+..|++++
T Consensus 80 d~-~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 80 DP-ELKPLARLRLARILLQQGQYDEALATLQQIP---------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 22 2222458889999999999999999986621 245566788899999999999999999999874
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.97 E-value=2.3e-08 Score=77.32 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
.+++.+|..+...|++++|+..|++++.. .++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 56788999999999999999999999987 23344456789999999999999999999999999862 334
Q ss_pred hhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 531 PDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+....++..+|.++..+|++++|. ..++.+++..|++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAK-ATLQQVIKRYPGSSAA 112 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHH-HHHHHHHHHCcCChhH
Confidence 556788999999999999999999 9999999888876553
No 152
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.96 E-value=4.5e-05 Score=72.88 Aligned_cols=227 Identities=16% Similarity=0.097 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHH------HHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc
Q 007930 244 DRRLMALVYEAKADYESALEHLVLA------SMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG 317 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 317 (584)
.|..-|.+|....++++|+++|++. +++.+ ..-+..+...-...|.-+...|+++.|+.+|-++-.+.+.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka--- 738 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA--- 738 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH---
Confidence 3444556666666666666666542 22211 1122333444445566666667777777666555433211
Q ss_pred CCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 318 EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 318 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
...-....++.+|+..++...... .....|-.++.-|...|+++.|.++|.++-..
T Consensus 739 -------------ieaai~akew~kai~ildniqdqk----------~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~- 794 (1636)
T KOG3616|consen 739 -------------IEAAIGAKEWKKAISILDNIQDQK----------TASGYYGEIADHYANKGDFEIAEELFTEADLF- 794 (1636)
T ss_pred -------------HHHHhhhhhhhhhHhHHHHhhhhc----------cccccchHHHHHhccchhHHHHHHHHHhcchh-
Confidence 111222344555554444332221 11234455677777888888888777664221
Q ss_pred HhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH----
Q 007930 398 EDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELF---- 473 (584)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~---- 473 (584)
..-..+|-+.|+++.|.++-++... +......|...+.-+-..|+|.+|.++|
T Consensus 795 --------------~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 795 --------------KDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred --------------HHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 1234566677777777666555432 2233455555666666667666666555
Q ss_pred --HHHHHHHHHHhC---------CCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 474 --EEARGVLEQECG---------SCHLD-TLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 474 --~~a~~~~~~~~~---------~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+++.++.+..- ..|++ ..++...+|.-|...|+...|...|-++-+.
T Consensus 852 ~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 852 EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 344444443321 11222 3457788899999999999999888777553
No 153
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=98.96 E-value=1.2e-06 Score=89.11 Aligned_cols=431 Identities=15% Similarity=0.098 Sum_probs=277.4
Q ss_pred HHHHHHHhcCC------hhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 120 MLAAIYCSLGR------FEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 120 ~l~~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
.++.+-...|+ .++|.++..+++.-.....++-+... .+...++......+++.+|...-++++++.+..++
T Consensus 623 ~l~~~is~d~~eS~~~~~~dav~~~~~al~k~~~~~~~~~fnp--~~f~s~~v~~~~t~~~~~a~~~~qk~~d~~Erll~ 700 (1236)
T KOG1839|consen 623 KLVNCISADGRESSKLSLDDAVKYATKALVKLVAVCGPYGFNP--AGFYSLAVVLYHTEDFNQAAIQQQKVLDINERLLG 700 (1236)
T ss_pred HHHHhhccccccccccchHHHHHHHHHHHHHHHhhhcccccCc--cccccCceEecCccccchhhhhhHhHHHHHHHHhc
Confidence 34444444444 34566665555543322222211111 12233367777889999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMI 273 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 273 (584)
.+.|+....+..++..++....+.+|+.+-.+.+.+.....+..++..+..+.+....-...| +-++.++..+++.+.
T Consensus 701 ~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~ 778 (1236)
T KOG1839|consen 701 LDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNL 778 (1236)
T ss_pred cccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 999999999999997778888889999999999888776655444444433333333222222 555566665555444
Q ss_pred HcCCcchHHHHH-HHHHHHHH---HcCChhHHHHHHHHHHHHHHH--hhcCCccc-------------------------
Q 007930 274 ANGQENEVAAID-VSIGNIYM---SLCRFDEAIFSYQKGLTVFKA--TRGEDHLS------------------------- 322 (584)
Q Consensus 274 ~~~~~~~~~~~~-~~la~~~~---~~g~~~~A~~~~~~al~~~~~--~~~~~~~~------------------------- 322 (584)
..-.......+. ..+..++. ..........-.-++.+...+ ..+...+.
T Consensus 779 r~l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~ 858 (1236)
T KOG1839|consen 779 RLLGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNK 858 (1236)
T ss_pred hhcchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhcccccccc
Confidence 321111111111 11111111 122222222222222211000 00000000
Q ss_pred --HHHHHHHHHHHHHHcccHHHH---HHHHHHHHHHHhcCC-CCC---------------------ChH--HHHHHHHHH
Q 007930 323 --VASIFIRLADLYYRIGKLRES---KSYCENALRVCAKPA-PAT---------------------APE--EIANGLTEI 373 (584)
Q Consensus 323 --~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~~~~~-~~~---------------------~~~--~~~~~~~~l 373 (584)
.......+..+....|...-+ ...+..-+....+.. ... ..| ..+.-....
T Consensus 859 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~ 938 (1236)
T KOG1839|consen 859 FTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQ 938 (1236)
T ss_pred ccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhh
Confidence 000101111111122221111 111111111110000 000 001 122333445
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 007930 374 SAIYEALNEHEEALKLLQKAMKLLEDTPG-YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452 (584)
Q Consensus 374 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (584)
+......|.+.+|.+ .-+++....+..+ .++..+..+..++.++...|++++|+..-.++.-+.+.....+++.....
T Consensus 939 gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 666667788888888 8888888876666 47788999999999999999999999999999998888877788888899
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
+.+++...+..++...|...+.++..+..=..++++|..+.+..+++.++...++++.|+.+.+.|......++|+.+-.
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~ 1097 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELE 1097 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchh
Confidence 99999999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchHHHHHH
Q 007930 533 IDDEKERLAELLKETGRARNRKG 555 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~ 555 (584)
+...+..++++....+++..|..
T Consensus 1098 ~~~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1098 TALSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999998864
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.96 E-value=2.4e-08 Score=77.21 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.+++.+|..+...|++++|+..|++++.... .++....+++.+|.++...|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP-----KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 4567899999999999999999999987521 12233578899999999999999999999999987 3444
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+....++..+|.++...|++++|..++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 555788999999999999999999999999997
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.95 E-value=7.5e-09 Score=70.46 Aligned_cols=64 Identities=33% Similarity=0.387 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG-RVEDAIEILEYILKV 521 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 521 (584)
+.++..+|.++...|++++|+.+|++++++ +|+...+++++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999 8999999999999999999 799999999999998
No 156
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.4e-06 Score=69.44 Aligned_cols=199 Identities=13% Similarity=0.169 Sum_probs=139.2
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 007930 211 IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGN 290 (584)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 290 (584)
.-.+++++|.++|.++-.++ ....+++.|-..|.++.....+.++..+.+..|...+.
T Consensus 25 gg~~k~eeAadl~~~Aan~y----------------------klaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~ 82 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMY----------------------KLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN 82 (288)
T ss_pred CCCcchHHHHHHHHHHHHHH----------------------HHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 33457888888887775543 33445666666677776666677777777888777777
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI-GKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
+|.+. +..+|..+++++++++...+ ....-+.-+..+|.+|..- .++++|+.+|+++-+.+.. .......-.+
T Consensus 83 cykk~-~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC 156 (288)
T KOG1586|consen 83 CYKKV-DPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKC 156 (288)
T ss_pred Hhhcc-ChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHH
Confidence 77654 99999999999999987765 2233456677899999765 8999999999999998865 2223334466
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
+...+..-...++|.+|+..|++.....-++.-.....-..+..-|.+++...+.-.+...+++-.++
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 77778888889999999999998776554432222223334456677777767766665555555443
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.94 E-value=1.7e-07 Score=74.76 Aligned_cols=123 Identities=22% Similarity=0.201 Sum_probs=97.1
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 007930 294 SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEI 373 (584)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 373 (584)
..++...+...+++.+... ++.+....+...+|.+++..|++++|...|+.++... .++.....+...+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------~d~~l~~~a~l~L 91 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA------PDPELKPLARLRL 91 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------CCHHHHHHHHHHH
Confidence 5788888877777766641 2234557888899999999999999999999999863 2344556788899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 374 SAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 374 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
+.++...|++++|+..++.. ........+...+|.++...|++++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~--------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI--------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc--------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999998651 1222335567789999999999999999999874
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.93 E-value=2e-08 Score=92.82 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
+...|..++..|++++|+.+|.+++++ .|....++.++|.++..+|++++|+..+++++.+ +|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 456688888999999999999999998 8888999999999999999999999999999998 899
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 533 IDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
...+++++|.++..+|++++|+ ..++.++..+|+....
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~-~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAK-AALEKGASLAPGDSRF 106 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCCCHHH
Confidence 9999999999999999999999 8899999888776554
No 159
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=5.2e-05 Score=72.52 Aligned_cols=225 Identities=17% Similarity=0.212 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHH------HHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKG------LTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
..|-.-|.+|.+..++++|+++|++. +++.+-.. .......-...|.-+...|+++.|+.+|-++-.+.+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 34555677777788888888887753 33332222 2223334445577777888899988888776544321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
........++.+|+..++...... .....|-.++.-|...|+|+.|.++|.++-.
T Consensus 739 -----------------ieaai~akew~kai~ildniqdqk--------~~s~yy~~iadhyan~~dfe~ae~lf~e~~~ 793 (1636)
T KOG3616|consen 739 -----------------IEAAIGAKEWKKAISILDNIQDQK--------TASGYYGEIADHYANKGDFEIAEELFTEADL 793 (1636)
T ss_pred -----------------HHHHhhhhhhhhhHhHHHHhhhhc--------cccccchHHHHHhccchhHHHHHHHHHhcch
Confidence 122334456677766655432221 1123455678899999999999999887533
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHH-
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEIL- 515 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~- 515 (584)
. ..-...|.+.|+++.|.++-+++.. .......|..-+.-+...|++.+|..+|
T Consensus 794 ~----------------~dai~my~k~~kw~da~kla~e~~~---------~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 794 F----------------KDAIDMYGKAGKWEDAFKLAEECHG---------PEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred h----------------HHHHHHHhccccHHHHHHHHHHhcC---------chhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 1 2223456778888888776655432 2234445555666666777776666665
Q ss_pred -----HHHHHHHHHH---------hCCCChhH-HHHHHHHHHHHHHhchHHHHHHHHHHH
Q 007930 516 -----EYILKVREEK---------LGTANPDI-DDEKERLAELLKETGRARNRKGKSLEN 560 (584)
Q Consensus 516 -----~~a~~~~~~~---------~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~l~~ 560 (584)
.++++++.+. .+..||+. .++...++.-+...|+.++|...+++.
T Consensus 849 ti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 849 TIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred EccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 3455555432 23334443 467788999999999999998666653
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.90 E-value=1.4e-08 Score=69.07 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHhhhh
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG-RARNRKGKSLENLLDSNA 566 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~l~~~~~~~~ 566 (584)
.+.++..+|.++...|++++|+.+|++++++ +|+...++.++|.++..+| ++++|+ ..++.++..+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~-~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAI-EDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHH-HHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHH-HHHHHHHHcCc
Confidence 3578999999999999999999999999999 8999999999999999999 899999 99999988776
No 161
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=6.4e-06 Score=67.05 Aligned_cols=206 Identities=17% Similarity=0.160 Sum_probs=135.1
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 007930 168 CSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRL 247 (584)
Q Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 247 (584)
+.-.+.+++|.+.|.++-.+++ ...++..|-..|.++-+...+.+ +....+.+|..
T Consensus 24 fgg~~k~eeAadl~~~Aan~yk----------------------laK~w~~AG~aflkaA~~h~k~~--skhDaat~Yve 79 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYK----------------------LAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVE 79 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHH
Confidence 3344578888888887765543 22333444444444444443333 12223344444
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHhhcCCcccHHHH
Q 007930 248 MALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL-CRFDEAIFSYQKGLTVFKATRGEDHLSVASI 326 (584)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 326 (584)
.+.+|.. ++..+|+..++++++++...|.....+..+..+|.+|..- .++++|+.+|+++-+.+.... .....-.+
T Consensus 80 A~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--s~ssANKC 156 (288)
T KOG1586|consen 80 AANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--SVSSANKC 156 (288)
T ss_pred HHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--hhhhHHHH
Confidence 4555444 4888899999999998888888777788888999999855 999999999999999875432 12333456
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
+...+..-...++|.+|+..|++.....-... --....-..+..-|.++....+.-.+...+++-.++.|...+
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~--LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN--LLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 77778888889999999999999877653310 011122234455677777777777777777776666666533
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.88 E-value=1.5e-08 Score=71.99 Aligned_cols=84 Identities=23% Similarity=0.214 Sum_probs=68.6
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 499 (584)
.+|+++.|+.+++++++.... .+ ....++.+|.+++..|++++|+.++++ .+. .+......+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHH
Confidence 368999999999999996321 11 456778899999999999999999999 555 456677888899
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 007930 500 ATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a 518 (584)
.++..+|++++|++.|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 163
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=5e-07 Score=81.90 Aligned_cols=123 Identities=17% Similarity=0.068 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
...+.+..+..++..|++++|+..+...+... |+....+...+.++...++.++|.+.+++++...+..
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~---------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-- 373 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ---------PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-- 373 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--
Confidence 33444455555555555555555555533332 1223344444555555555555555555555544332
Q ss_pred CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEA 469 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (584)
.....++|.++.+.|++.+|+..++..+. ..+..+..|..|++.|..+|+..+|
T Consensus 374 -----~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 374 -----PLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred -----cHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHH
Confidence 22334455555555555555555554443 2233344555555555555444443
No 164
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.87 E-value=0.00013 Score=71.85 Aligned_cols=339 Identities=11% Similarity=-0.041 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 007930 113 ELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL 192 (584)
Q Consensus 113 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (584)
.....+..-+..+...|...+|+++.-.| .++......+...+.-....++..--..+.+..-.- .
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA----------~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~----~ 410 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDHALAA----------GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAE----L 410 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHhC----------CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHH----H
Confidence 33445555555556666666666554432 222222233444444444444433222221111000 0
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 193 GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH-SASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
-..........++......++.+|..+..++....+.... ......+...-..|.+....|++++|+++.+.++..
T Consensus 411 ---l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~ 487 (894)
T COG2909 411 ---LASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ 487 (894)
T ss_pred ---HhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 0112234445677788899999999999988776655321 123334555666788889999999999999998775
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHH--HHHHHH
Q 007930 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRES--KSYCEN 349 (584)
Q Consensus 272 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~ 349 (584)
...... .....++..+|.+..-.|++++|..+..++.++.++.. .......+....+.++..+|+...| ...+..
T Consensus 488 L~~~~~-~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 488 LPEAAY-RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred cccccc-hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 443322 23455678899999999999999999999999877753 1244556666778889999943333 222322
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHH
Q 007930 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARS 429 (584)
Q Consensus 350 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 429 (584)
.-...... ...+.....+. +.++...-+++.+..-....++...............+..++.++...|++++|..
T Consensus 565 ~~~q~l~q--~~~~~f~~~~r---~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~ 639 (894)
T COG2909 565 IREQHLEQ--KPRHEFLVRIR---AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALA 639 (894)
T ss_pred HHHHHhhh--cccchhHHHHH---HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 22221110 11111122233 33333333366666666666666544423333333334589999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 007930 430 SFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEAR 477 (584)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 477 (584)
.+.+....+.... .+....+.++.........+|+..+|.....+..
T Consensus 640 ~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 640 QLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 9999988876654 2333334444444555667899999988877743
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.86 E-value=4.1e-08 Score=72.80 Aligned_cols=98 Identities=29% Similarity=0.375 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|..++++++.+ .|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 4678899999999999999999999987 6666688999999999999999999999999987 56
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
....++..++.++...|++++|. ..++.++...|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~ 99 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEAL-EAYEKALELDP 99 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHH-HHHHHHHccCC
Confidence 66688999999999999999999 77777776554
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.85 E-value=1.5e-07 Score=70.44 Aligned_cols=101 Identities=30% Similarity=0.305 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
.+++.+|.++-..|+.++|+.+|++++.. +...+....++..+|.++..+|++++|+..+++++.- +
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--------~ 68 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--------F 68 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C
Confidence 46788999999999999999999999985 4445566789999999999999999999999999875 4
Q ss_pred hh---HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 531 PD---IDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 531 p~---~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
|+ .......++.++...|+.++|....+..+.+.
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALAET 105 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 55 77777889999999999999996666555433
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.84 E-value=1.3e-07 Score=82.45 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=94.8
Q ss_pred HHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 451 IVLNQMGLAC-LQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 451 ~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
...+..+..+ ...|+|++|+..|++.++. .|+.+....+++.+|.+|...|++++|+..|++++..+ |+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4455566554 5679999999999999998 23344457899999999999999999999999999874 45
Q ss_pred ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHHH
Q 007930 530 NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVT 574 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~ 574 (584)
+|...++++.+|.++..+|++++|+ ..++.++...|++.....+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~-~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAK-AVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCCHHHHHH
Confidence 7889999999999999999999999 9999999988887765533
No 168
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=3.2e-06 Score=70.32 Aligned_cols=250 Identities=17% Similarity=0.088 Sum_probs=158.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 208 EAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
+-++..|+|..++...++..... ........+.+.|..+|++...+.-...+ .. ....+...
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~---------~~~e~d~y~~raylAlg~~~~~~~eI~~~--------~~-~~lqAvr~ 77 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK---------TDVELDVYMYRAYLALGQYQIVISEIKEG--------KA-TPLQAVRL 77 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc---------chhHHHHHHHHHHHHcccccccccccccc--------cC-ChHHHHHH
Confidence 34556788877776554433211 11223556777888888876655443321 11 12223334
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 007930 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367 (584)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 367 (584)
++.....-++.++-+.-..+-+.. ............-|.++...|++++|+........+
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------- 137 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------------- 137 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------
Confidence 444444444444433333322221 112333345556678899999999999888773332
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHcCC
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV----GRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
++...--.++.++.+++-|...++++.++..+. ++..||..+... +++..|.-+|++.-+
T Consensus 138 E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---------tLtQLA~awv~la~ggek~qdAfyifeE~s~------- 201 (299)
T KOG3081|consen 138 EAAALNVQILLKMHRFDLAEKELKKMQQIDEDA---------TLTQLAQAWVKLATGGEKIQDAFYIFEELSE------- 201 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-------
Confidence 233334567788889999999888888776553 445566666543 345566655555433
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
+.++ ....++.++.++..+|+|++|...++.++.. .+..++++.++-.+-...|...++..-+-.-+.
T Consensus 202 k~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 202 KTPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred ccCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 2333 3578899999999999999999999999997 777889999999999999999887765544443
No 169
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=3.2e-05 Score=70.23 Aligned_cols=414 Identities=15% Similarity=0.088 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH---h
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD---I 147 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~ 147 (584)
.-..+..|..++.... +..|++.....+...+.+. ....+..-...-..+....+-++|+.++.-.-++.. .
T Consensus 100 t~~~yn~aVi~yh~~~-~g~a~~~~~~lv~r~e~le----~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~ 174 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEE-NGSAMQLSSNLVSRTESLE----SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM 174 (696)
T ss_pred hHHhhhhheeeeeHhh-cchHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456777777888777 7889888877776655443 111222333444555666677777776554333321 0
Q ss_pred -ccC----------Cchhhh----------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 007930 148 -GKG----------SDRALA----------KFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYL 206 (584)
Q Consensus 148 -~~~----------~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 206 (584)
..+ ...+.. .......-...+....+..-+..-.+.++.+ ..+...++...
T Consensus 175 ~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--------a~~s~~~l~LK 246 (696)
T KOG2471|consen 175 KLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--------AQDSSMALLLK 246 (696)
T ss_pred cccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--------cCCCcHHHHHH
Confidence 000 000000 0001111122223333333333333333222 12345567778
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHc--CC----
Q 007930 207 AEAHIQAMQFDEAENLCKKILEIHREHGHSASL--EEAADRRLMALVYEAKADYESALEHLVLASM-VMIAN--GQ---- 277 (584)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~--~~---- 277 (584)
+..++..|++.+|.+.+...- +....+....+ .....++++|.+++..|.|.-+..+|.+|++ .+... +-
T Consensus 247 sq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~ 325 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK 325 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 888999999999998875432 22222211122 2334568999999999999999999999996 33322 11
Q ss_pred -----cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc-------------
Q 007930 278 -----ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK------------- 339 (584)
Q Consensus 278 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------- 339 (584)
......++++.|..|...|+.-.|.++|.++...+. ..+..|..++.++....+
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh--------~nPrlWLRlAEcCima~~~~l~ee~~~s~s~ 397 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH--------RNPRLWLRLAECCIMALQKGLLEEGNSSLSR 397 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHHhhhhhhhhccCCccc
Confidence 123467889999999999999999999999999853 345567777766543210
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHhcC----------------CC--------
Q 007930 340 ------------------------------------LRESKSYCENALRVCAKP----------------AP-------- 359 (584)
Q Consensus 340 ------------------------------------~~~A~~~~~~al~~~~~~----------------~~-------- 359 (584)
.+-|.-+++.++-+..+. ..
T Consensus 398 ~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~ 477 (696)
T KOG2471|consen 398 SEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGN 477 (696)
T ss_pred ccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCC
Confidence 223444555555433110 00
Q ss_pred ---------CC-------ChH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007930 360 ---------AT-------APE--------EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415 (584)
Q Consensus 360 ---------~~-------~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 415 (584)
++ ..| ....++.+.+.+-...|+.-.|+..-.+.++...- ..++.-+|
T Consensus 478 ~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~l--------S~~~kfLG 549 (696)
T KOG2471|consen 478 TTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADL--------SKIYKFLG 549 (696)
T ss_pred CCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhh--------hhHHHHHH
Confidence 00 000 12335556677778889999998888887765432 23333344
Q ss_pred -----HHHHHhccHHHHHHHHHHHH------HH------HHH----------cCCCCC--------chHHHHHHHHHHHH
Q 007930 416 -----VMLYVVGRYGEARSSFESAV------VK------LRA----------SGESKS--------AFFGIVLNQMGLAC 460 (584)
Q Consensus 416 -----~~~~~~g~~~~A~~~~~~a~------~~------~~~----------~~~~~~--------~~~~~~~~~l~~~~ 460 (584)
.++..+.+..+|...+.--+ .+ +.. .+.+.+ ......++++|.++
T Consensus 550 HiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~ 629 (696)
T KOG2471|consen 550 HIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAAL 629 (696)
T ss_pred HHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHH
Confidence 44455677777776654411 00 000 000100 11235688999999
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 461 LQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 461 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
..+|++++|..++..|..+..+. ....+...--.+-..+|+...|...+++.--
T Consensus 630 alq~~~dqAk~ll~~aatl~hs~------v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 630 ALQGHHDQAKSLLTHAATLLHSL------VNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHhcccHHHHHHHHHHHHhhhcc------ccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 99999999999999999885321 1122333333344678999999988877643
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.82 E-value=3.2e-08 Score=70.22 Aligned_cols=81 Identities=28% Similarity=0.339 Sum_probs=67.1
Q ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 007930 462 QLYRINEATELFEEARGVLEQECGSCHLD--TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKER 539 (584)
Q Consensus 462 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~ 539 (584)
.+|++++|+.+++++++. .|. ....++.+|.+|.+.|++++|+.++++ ... ++......+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~--------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l 63 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLEL--------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYL 63 (84)
T ss_dssp HTT-HHHHHHHHHHHHHH--------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH--------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHH
Confidence 368999999999999998 342 556788899999999999999999999 555 5777888889
Q ss_pred HHHHHHHhchHHHHHHHHHHH
Q 007930 540 LAELLKETGRARNRKGKSLEN 560 (584)
Q Consensus 540 l~~~~~~~g~~~~A~~~~l~~ 560 (584)
+|.++..+|++++|+ ..++.
T Consensus 64 ~a~~~~~l~~y~eAi-~~l~~ 83 (84)
T PF12895_consen 64 LARCLLKLGKYEEAI-KALEK 83 (84)
T ss_dssp HHHHHHHTT-HHHHH-HHHHH
T ss_pred HHHHHHHhCCHHHHH-HHHhc
Confidence 999999999999999 55543
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.79 E-value=3.1e-08 Score=66.32 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=55.8
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 455 QMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+|..+...|++++|+..|+++++. +|+...+++.+|.++..+|++++|+.+|++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999998 8999999999999999999999999999999998
No 172
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=2.1e-06 Score=77.53 Aligned_cols=340 Identities=15% Similarity=0.075 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHH
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL-AKFSGYMQLGDTCSSMGLLDRSVWCYESGLE-IQIEA 191 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~ 191 (584)
...++...+..++..|+|.+|.+.+...--.. ...+...+. .....++++|.+++..|.|.-+..+|.+++. .....
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999876542211 111111111 1112368999999999999999999999996 33222
Q ss_pred hCCC---------ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc---cHH
Q 007930 192 LGDS---------DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKA---DYE 259 (584)
Q Consensus 192 ~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g---~~~ 259 (584)
...- .....+++++.|..|...|+.-.|.++|.++...+..++ ..|..++.+..... -.+
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP--------rlWLRlAEcCima~~~~l~e 389 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP--------RLWLRLAECCIMALQKGLLE 389 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHhhhhhhh
Confidence 1110 123467899999999999999999999999999987765 34777877765421 111
Q ss_pred HHHHHHHHH-H------------HHHHHc-----CCcchHHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHH--------
Q 007930 260 SALEHLVLA-S------------MVMIAN-----GQENEVAAIDVSIGNIYMSLCRFDEA-IFSYQKGLTVF-------- 312 (584)
Q Consensus 260 ~A~~~~~~a-~------------~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~-------- 312 (584)
+......+. + -++.+. +....+...-..++.++.+.+-+--- ...+...+...
T Consensus 390 e~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~ 469 (696)
T KOG2471|consen 390 EGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGS 469 (696)
T ss_pred hccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCC
Confidence 111111100 0 000000 00000011111112222111100000 00000000000
Q ss_pred -------------HHhhcC-------C--------cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChH
Q 007930 313 -------------KATRGE-------D--------HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE 364 (584)
Q Consensus 313 -------------~~~~~~-------~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 364 (584)
++..|+ . ......++.+++.+-...|+.-.|+....+.+...
T Consensus 470 ~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~---------- 539 (696)
T KOG2471|consen 470 SSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLA---------- 539 (696)
T ss_pred CCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhh----------
Confidence 000000 0 11234456677778888899999988888888764
Q ss_pred HHHHHHHHHHHHH-----HHhcCHHHHHHHHHHHH------H--HHHhCC--------------CC---------cccHH
Q 007930 365 EIANGLTEISAIY-----EALNEHEEALKLLQKAM------K--LLEDTP--------------GY---------HSTIA 408 (584)
Q Consensus 365 ~~~~~~~~la~~~-----~~~g~~~~A~~~~~~a~------~--~~~~~~--------------~~---------~~~~~ 408 (584)
....++..||.+| +.+.+..+|..++.--+ . ...... +. .....
T Consensus 540 ~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~ 619 (696)
T KOG2471|consen 540 DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARG 619 (696)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhH
Confidence 3345555555554 45566777766654310 0 000000 00 01123
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
..++++|.++.-+|++++|..++..+..+...... ..+......+-...|+...|...+++.--
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~------~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVN------VQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhcccc------HHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 46789999999999999999999999987653211 12222223344567999999888776543
No 173
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.5e-07 Score=80.47 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc--------cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS--------TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
.....-|..|++.|+|..|...|++++........... ....++.+++.++.++++|.+|+....+++.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 44456688999999999999999999998875544221 23457889999999999999999999999995
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHH-HHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDA-IEILEYI 518 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a 518 (584)
.+....+++..|.++...|+++.|+..|++++++ .|....+...|..+-.+..++.+. .+.|..+
T Consensus 287 ------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 287 ------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred ------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999999 888888888888887665554443 4555555
Q ss_pred HHH
Q 007930 519 LKV 521 (584)
Q Consensus 519 ~~~ 521 (584)
+..
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 443
No 174
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=1.9e-06 Score=78.32 Aligned_cols=132 Identities=17% Similarity=0.081 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
..+++..+..++..|++++|+..++..+...|++ ...+...+.++...++..+|.+.+++++.. .
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~ 370 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-------PYYLELAGDILLEANKAKEAIERLKKALAL--------D 370 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------C
Confidence 4677788888999999999999998876665544 456667899999999999999999999985 3
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
|.......++|.++.+.|++++|+..++..+.- +|+.+..|..||..|..+|+..+|...+.+...+
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 344678889999999999999999999888876 7888889999999999999888877666555544
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.77 E-value=1.2e-07 Score=70.14 Aligned_cols=96 Identities=28% Similarity=0.368 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
++..+|.++...|++++|+..++++++. .+....++..+|.++...|++++|+.++++++.. .+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 4568899999999999999999999885 2223478899999999999999999999999987 56
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
....++..+|.++...|++++|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 66688999999999999999999999998875
No 176
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.7e-05 Score=66.68 Aligned_cols=301 Identities=15% Similarity=0.107 Sum_probs=185.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHH
Q 007930 204 RYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAA 283 (584)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 283 (584)
..+|.-....+++++|+..|.+.+...-...+......-.+...++.+|...|++..--+........+.... .+....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft-k~k~~K 85 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT-KPKITK 85 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc-chhHHH
Confidence 3456667788899999999999886521111111122334578899999999998877777666555444332 233333
Q ss_pred HHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 284 IDVSIGNIY-MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 284 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
+...+-..+ .....++.-+..+...++...+.. ........-..+..++++.|+|.+|+......+.-.++ -++
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk---~DD 160 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKK---YDD 160 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---hcC
Confidence 333333322 345567777888887777654422 01222334456788899999999999999998888776 345
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.+.....+..-..+|....+..++...+..|.......+-.+...+..-..-|..+....+|.-|..+|-++++-+....
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~ 240 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLK 240 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccccc
Confidence 56677788888899999999999988888877776665555544555555556777788899999999999998765543
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELF--EEARGVLEQECGSCHLDTLGVYSNLAATYDA--LGRVEDAIEILEYI 518 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 518 (584)
.........-|..+..+. .+..++-...+ +..++.+ .....++....+..+.. +.+|..|+..|..-
T Consensus 241 ~d~kAc~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y-------~~r~I~am~avaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 241 MDVKACVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHY-------DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred chHHHHHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhh-------hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence 321111111122223332 23333332222 2222211 22334556666666532 34566666666554
Q ss_pred H
Q 007930 519 L 519 (584)
Q Consensus 519 ~ 519 (584)
+
T Consensus 312 l 312 (421)
T COG5159 312 L 312 (421)
T ss_pred h
Confidence 4
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.73 E-value=6.5e-07 Score=66.99 Aligned_cols=101 Identities=26% Similarity=0.162 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
+.+.+|.++-..|+.++|+.+|++++.. + ...+....++..+|..+...|++++|+..+++++..+ |+.+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~----g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~ 72 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA----G-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDDE 72 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcc
Confidence 5678999999999999999999999883 1 1234456789999999999999999999999998761 2222
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
....+...++.++...|++++|+..+-.++.
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3667778899999999999999999988775
No 178
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.4e-05 Score=67.52 Aligned_cols=318 Identities=16% Similarity=0.100 Sum_probs=199.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchH
Q 007930 204 RYLAEAHIQAMQFDEAENLCKKILEIHREHG--HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEV 281 (584)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 281 (584)
...+.......++++++..+.+.+....... +......-.....+|..+...|+.++-..........+...+ .+..
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~-Kaka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS-KAKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh-hHHH
Confidence 3344455566677888888888776421111 111111234577899999999999887777765544433322 2233
Q ss_pred HHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC
Q 007930 282 AAIDVSIGNIYM-SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360 (584)
Q Consensus 282 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 360 (584)
+.+...+-.... .-+..+.-+..+..+++-..+.. .....-..-..+..+|...++|.+|+......+.-.++ -
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK---l 161 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK---L 161 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh---c
Confidence 333333433333 33455667777777777654432 01122334456889999999999999999999888877 3
Q ss_pred CChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
++......++..-...|....+..+|...+..|-......+-.+...+.+-..-|.++....+|.-|..||-++.+-+..
T Consensus 162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 45566677777788899999999999998888877766655555555555556677777889999999999999998877
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHH
Q 007930 441 SGESKSAFFGIVLNQMGLACLQLYRINEATELF--EEARGVLEQECGSCHLDTLGVYSNLAATYDA--LGRVEDAIEILE 516 (584)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~ 516 (584)
.+++.. -..++..+-.+-...+..++--..+ +.+++. .....++....+..+.+ +.+|+.|+.-|+
T Consensus 242 ~~~~v~--A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--------~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 242 LDDDVK--ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--------AGRDIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred cCCcHH--HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--------cCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 665422 2334444444445556666544443 333332 33445777888887754 346666666666
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 517 YILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 517 ~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
.-+.- +|-...-+..|-..+.
T Consensus 312 ~eL~~--------D~ivr~Hl~~Lyd~lL 332 (411)
T KOG1463|consen 312 KELAE--------DPIVRSHLQSLYDNLL 332 (411)
T ss_pred HHHhc--------ChHHHHHHHHHHHHHH
Confidence 55543 5655554444444433
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.71 E-value=7.5e-07 Score=77.67 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=86.8
Q ss_pred HHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 410 IEAQMGVML-YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 410 ~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..+..+..+ ...|+|++|+..|+..+..+.. ......+++.+|.+|+..|++++|+..|+++++. .|++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~s 213 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPKS 213 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC
Confidence 344555554 5679999999999999986432 3334678999999999999999999999999987 3567
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+...++++.+|.++..+|++++|...|+++++.
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999987
No 180
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.70 E-value=2.9e-05 Score=79.55 Aligned_cols=211 Identities=12% Similarity=0.087 Sum_probs=163.4
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 007930 111 ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190 (584)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 190 (584)
+|+.+..|...-..+...++.++|.+.+++|+....-.. ......+|..+-+....-|.-+.-.+.|++|.+.+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE----eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE----EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch----hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--
Confidence 455566666666777889999999999999997652111 11111223333333444466677778888887773
Q ss_pred HhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 191 ALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 191 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
+-...+..|..+|...+++++|.++++..++.+.+.. .+|...+..+..+++-+.|...+.+|+.
T Consensus 1528 -------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--------~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1528 -------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR--------KVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred -------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh--------hHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3346788899999999999999999999998876332 4588999999999999999999999987
Q ss_pred HHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 271 VMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 271 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
.+.+ ..........|.+-++.|+.+.+...|+..+.. .|.....|.-+...-.+.|+.+....+|+++
T Consensus 1593 ~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1593 SLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6543 345666778899999999999999999998886 6888889999999999999999999999999
Q ss_pred HHHH
Q 007930 351 LRVC 354 (584)
Q Consensus 351 l~~~ 354 (584)
+.+.
T Consensus 1661 i~l~ 1664 (1710)
T KOG1070|consen 1661 IELK 1664 (1710)
T ss_pred HhcC
Confidence 9874
No 181
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.70 E-value=4.3e-07 Score=76.68 Aligned_cols=109 Identities=19% Similarity=0.142 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
.++.+.-++..|+|.+|...|..-++. .|+.+..+.++++||.+++.+|++++|...|..+++-+ |.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 677888888999999999999999987 46677888999999999999999999999999998853 55889
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 533 IDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
.+++++.||.+..++|+.++|. ..|+.+++.-|......
T Consensus 214 ApdallKlg~~~~~l~~~d~A~-atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEAC-ATLQQVIKRYPGTDAAK 252 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999 99999999888776554
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=6.4e-07 Score=76.65 Aligned_cols=108 Identities=19% Similarity=0.068 Sum_probs=96.2
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG---RVEDAIEILEYILKVR 522 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~ 522 (584)
+|..+.-|..||.+|+.+|++..|...|.+|+++ .|+.++++..+|.++..+. ...++...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 4556788999999999999999999999999999 8888899999999887654 356899999999998
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 523 EEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|.+..+++.||..++..|++.+|. ..++.+++..|....
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPADDP 262 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCCCCc
Confidence 8999999999999999999999999 999999987665443
No 183
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=9.7e-06 Score=82.80 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=165.8
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
+|+.+..|...-..+...++.++|.+.+++|+....- ....+...+|..+-++...-|.-+.-.+.|++|.+.+..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~----REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~ 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINF----REEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA 1529 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc----chhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch
Confidence 7888888888888889999999999999999986511 111233445555555555556667777888888877644
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
..++..|..+|...+++++|.++++..++.+.+ ...+|...|..++.+.+-+.|...+++|++.
T Consensus 1530 --------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1530 --------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--------TRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred --------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 357778999999999999999999999887542 3578889999999999999999999999997
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
..+ .+..+.....|.+-++.|+.+.+...|+..+.- +|...+.|.-+...-.+.|+.+... ..++
T Consensus 1594 lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR-~lfe 1658 (1710)
T KOG1070|consen 1594 LPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVR-DLFE 1658 (1710)
T ss_pred cch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHH-HHHH
Confidence 321 236678888899999999999999999998886 8888888888888888888888877 6677
Q ss_pred HHHhh
Q 007930 560 NLLDS 564 (584)
Q Consensus 560 ~~~~~ 564 (584)
.++..
T Consensus 1659 Rvi~l 1663 (1710)
T KOG1070|consen 1659 RVIEL 1663 (1710)
T ss_pred HHHhc
Confidence 66643
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=98.68 E-value=1.7e-06 Score=67.29 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=87.0
Q ss_pred CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 007930 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLE 481 (584)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 481 (584)
+.........+..|.-++..|++++|...|+-..-. .+.....+..||.++..+++|++|+..|..+..+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-- 100 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-- 100 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 334445566678899999999999999999877653 3344678899999999999999999999999988
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
.++.+...+..|.||..+|+.+.|..+|+.++.
T Consensus 101 ------~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 101 ------LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ------ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 445556789999999999999999999999988
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.67 E-value=8.4e-08 Score=64.22 Aligned_cols=64 Identities=25% Similarity=0.279 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+.+|..+...|++++|+..|+++++. +|+...+++.+|.++..+|++++|. ..++.+++..|+.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEAL-AYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCC
Confidence 36899999999999999999999997 8999999999999999999999999 9999999888865
No 186
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.64 E-value=1.4e-05 Score=66.73 Aligned_cols=241 Identities=12% Similarity=0.080 Sum_probs=168.1
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007930 172 GLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALV 251 (584)
Q Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~ 251 (584)
.+.++|+..|++++++- |+....-..++-.+..+++.+|++++..+.|.+.+.........+... .+.+.+-..
T Consensus 41 ~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDy 114 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDY 114 (440)
T ss_pred cCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHH
Confidence 47899999999999983 333344567888889999999999999999999998766543222111 112222222
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcc----cHHHHH
Q 007930 252 YEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHL----SVASIF 327 (584)
Q Consensus 252 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~ 327 (584)
-....+.+--.++|+..+..++...+.......-..+|.+|+..|+|.+-...+.+.-.-++...|+++. ....+|
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiY 194 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIY 194 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhH
Confidence 2334455555566776666666666666666666789999999999999888888877777665555432 334455
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc
Q 007930 328 IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEE-IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST 406 (584)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 406 (584)
..-..+|..+.+-.+-...|++++.+-..+ .||. ...+...=|..+...|++++|..-|-+|.+.+.+.......
T Consensus 195 AlEIQmYT~qKnNKkLK~lYeqalhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt 270 (440)
T KOG1464|consen 195 ALEIQMYTEQKNNKKLKALYEQALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT 270 (440)
T ss_pred hhHhhhhhhhcccHHHHHHHHHHHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh
Confidence 555678888888888888999999886442 2333 33344445678889999999999998898887776344445
Q ss_pred HHHHHHHHHHHHHHhc
Q 007930 407 IAGIEAQMGVMLYVVG 422 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g 422 (584)
...-|..++..+.+.|
T Consensus 271 tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5555667777777765
No 187
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=1.4e-06 Score=68.94 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
+..-|.-++..|+|++|..-|..|+.++..... .....+|.+.|.++.+++.++.|+.-..+++++ +|.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pt 166 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPT 166 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cch
Confidence 335578889999999999999999998665432 345678889999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHH
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARN 552 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (584)
...++...|.+|.++..+++|++.|++.+++ +|....+...++++--......+
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ernE 220 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKINERNE 220 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999998 88887777666666555444333
No 188
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.62 E-value=3.2e-06 Score=61.70 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCCh
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAP 363 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 363 (584)
.+..-|......|+.+.|++.|.+++.+ -|..+.+|++.+..+..+|+.++|++-+++++++. ++..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-----g~~t 111 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA-----GDQT 111 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-----Cccc
Confidence 3455677888999999999999999999 68899999999999999999999999999999997 4555
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
.....++...|.+|..+|+.+.|..-|+.+-++-
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 6678899999999999999999999999987763
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.61 E-value=1.3e-05 Score=62.84 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=112.6
Q ss_pred HhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Q 007930 379 ALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGL 458 (584)
Q Consensus 379 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (584)
..=+++....-..+.+.+.+.. .-...+|..+...|++.+|...|++++.-. .......+..+++
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv--------qnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~ 132 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV--------QNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQ 132 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH--------HHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHH
Confidence 3334444444444444444433 334589999999999999999999998731 1123567889999
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 007930 459 ACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 459 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~ 538 (584)
..+..+++..|...+++..+.- + ....++....+|+++...|++.+|...|+.++.. -| ...+..
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~-----p-a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--------yp-g~~ar~ 197 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYN-----P-AFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--------YP-GPQARI 197 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcC-----C-ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--------CC-CHHHHH
Confidence 9999999999999999888761 1 1233456788999999999999999999999996 33 346677
Q ss_pred HHHHHHHHhchHHHHHHHHHH
Q 007930 539 RLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~l~ 559 (584)
..+..+.++|+.++|...+-+
T Consensus 198 ~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 198 YYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcchhHHHHHHHH
Confidence 789999999999999854443
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=98.60 E-value=9.2e-07 Score=68.71 Aligned_cols=101 Identities=11% Similarity=-0.023 Sum_probs=89.2
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
.......+..|.-++..|++++|...|+-..-. ++...+.+..||.++..++++++|+..|..+..+
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l----- 100 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL----- 100 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 344567788899999999999999999887776 6777788999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 527 GTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
.++++...+..|.++..+|+.+.|. ..++.+++.
T Consensus 101 ---~~~dp~p~f~agqC~l~l~~~~~A~-~~f~~a~~~ 134 (165)
T PRK15331 101 ---LKNDYRPVFFTGQCQLLMRKAAKAR-QCFELVNER 134 (165)
T ss_pred ---ccCCCCccchHHHHHHHhCCHHHHH-HHHHHHHhC
Confidence 5667777999999999999999999 899988874
No 191
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=3e-06 Score=68.04 Aligned_cols=205 Identities=12% Similarity=0.045 Sum_probs=135.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
+...+..++..|..|-..|-+.-|.--|.+++.+.|+.. .+++.+|..+...|+|+.|.+.|+..+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~--------~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP--------EVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH--------HHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 456677888999999999999999999999999876554 56999999999999999999999987764
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
+|..-.+..+.|..++.-|++.-|.+-+.+-.+. .+++|... .|..+- ...-++.+|...+.+-.+-..
T Consensus 129 --Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR~~~~d 197 (297)
T COG4785 129 --DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQRAEKSD 197 (297)
T ss_pred --CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHHHHhcc
Confidence 7777788899999999999999999887765543 11122221 111111 123356666654443222211
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
.. -..++..+ . ..|+..+ ...++++.....+...-...+..+++.+|..+...|+.++|...|+-++
T Consensus 198 -----~e----~WG~~iV~-~--yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 198 -----KE----QWGWNIVE-F--YLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred -----Hh----hhhHHHHH-H--HHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 01 11222111 1 1222211 1233343333322211223346788999999999999999999999888
Q ss_pred H
Q 007930 436 V 436 (584)
Q Consensus 436 ~ 436 (584)
.
T Consensus 265 a 265 (297)
T COG4785 265 A 265 (297)
T ss_pred H
Confidence 6
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.58 E-value=2.5e-06 Score=78.52 Aligned_cols=119 Identities=21% Similarity=0.136 Sum_probs=102.8
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 492 (584)
.+-.++...++++.|+..+++..+. .+ .+...++.++...++..+|+..+.+++.. .|...
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--------~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--------DP---EVAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--------CC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCH
Confidence 3455666678999999999887662 23 34556899999999999999999999977 77778
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
..+...+..+...++++.|+...++++.+ .|....+|+.|+.+|..+|++++|. ..++
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~AL-laLN 292 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENAL-LALN 292 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHH-HHHh
Confidence 99999999999999999999999999999 8999999999999999999999998 4444
No 193
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=5.3e-06 Score=66.65 Aligned_cols=208 Identities=13% Similarity=0.064 Sum_probs=134.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 007930 63 SSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSI 142 (584)
Q Consensus 63 ~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 142 (584)
....+...+..++++|..|-..|- +.-|.--|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|+..+
T Consensus 57 ~~l~~eeRA~l~fERGvlYDSlGL-~~LAR~DftQaLai---------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 57 RALTDEERAQLLFERGVLYDSLGL-RALARNDFSQALAI---------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred ccCChHHHHHHHHHhcchhhhhhH-HHHHhhhhhhhhhc---------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 345666778899999999999998 89999999999987 56678899999999999999999999999999
Q ss_pred HHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 007930 143 EVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENL 222 (584)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (584)
++.+. .. .+..+.|..++.-|++.-|.+-+.+-.+. .+++|... .|..+- ...-+..+|...
T Consensus 127 ELDp~-----y~----Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~-LWLYl~---E~k~dP~~A~tn 188 (297)
T COG4785 127 ELDPT-----YN----YAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRS-LWLYLN---EQKLDPKQAKTN 188 (297)
T ss_pred ccCCc-----ch----HHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHH-HHHHHH---HhhCCHHHHHHH
Confidence 87532 21 34778899999999999998877666554 23334322 222221 123356666554
Q ss_pred H-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHcCChhH
Q 007930 223 C-KKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG-QENEVAAIDVSIGNIYMSLCRFDE 300 (584)
Q Consensus 223 ~-~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~ 300 (584)
+ +++........ ....+-+.+| +..+ ...++++..-..... -......+++.+|..+...|+.++
T Consensus 189 L~qR~~~~d~e~W-----G~~iV~~yLg-------kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~ 255 (297)
T COG4785 189 LKQRAEKSDKEQW-----GWNIVEFYLG-------KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDE 255 (297)
T ss_pred HHHHHHhccHhhh-----hHHHHHHHHh-------hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 3 33333322211 1111122222 2211 112222221111000 012346778999999999999999
Q ss_pred HHHHHHHHHHH
Q 007930 301 AIFSYQKGLTV 311 (584)
Q Consensus 301 A~~~~~~al~~ 311 (584)
|...|+-++..
T Consensus 256 A~~LfKLaian 266 (297)
T COG4785 256 ATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.57 E-value=3.1e-06 Score=81.85 Aligned_cols=148 Identities=10% Similarity=0.026 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC--------HHHHHHHHHHHH
Q 007930 409 GIEAQMGVMLYVVG---RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR--------INEATELFEEAR 477 (584)
Q Consensus 409 ~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~ 477 (584)
.-++..|.-+...+ +..+|+.+|++++++ .|..+.++..++.++..... ...+....++++
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 33445555555444 478999999999995 55667788877777765432 223333333333
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHH
Q 007930 478 GVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKS 557 (584)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (584)
.+ +..+..+.++..+|..+...|++++|...+++|+.+ +|. ..++..+|.++...|+.++|. ..
T Consensus 412 al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~-~~ 475 (517)
T PRK10153 412 AL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAA-DA 475 (517)
T ss_pred hc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHH-HH
Confidence 32 224445678889999999999999999999999998 674 789999999999999999999 88
Q ss_pred HHHHHhhhhhhhHHHHHhHhhcCCCC
Q 007930 558 LENLLDSNAYRVKKEVTKRRSGFGFR 583 (584)
Q Consensus 558 l~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (584)
++.++..+|..+. ..-|+.+.|.
T Consensus 476 ~~~A~~L~P~~pt---~~~~~~~~f~ 498 (517)
T PRK10153 476 YSTAFNLRPGENT---LYWIENLVFQ 498 (517)
T ss_pred HHHHHhcCCCCch---HHHHHhcccc
Confidence 8888888887654 3345555554
No 195
>PRK11906 transcriptional regulator; Provisional
Probab=98.55 E-value=4e-06 Score=76.67 Aligned_cols=145 Identities=12% Similarity=0.008 Sum_probs=121.0
Q ss_pred HHHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHHH
Q 007930 412 AQMGVMLYVVG---RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL---------YRINEATELFEEARGV 479 (584)
Q Consensus 412 ~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~ 479 (584)
+..|......+ ..+.|..+|.+++.... ..|..+.++..++.+++.. .+..+|.+..++|+++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~-----ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSD-----IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhccc-----CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 45565555444 45678888888883211 3556788888888888754 2456788888889988
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
++..+.++..+|.+....|+++.|...|++|+.+ +|+.+.+++..|.+..-.|+.++|. ..++
T Consensus 334 --------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~-~~i~ 396 (458)
T PRK11906 334 --------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEAR-ICID 396 (458)
T ss_pred --------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHH-HHHH
Confidence 8888999999999999999999999999999999 9999999999999999999999999 9999
Q ss_pred HHHhhhhhhhHHHHHhHhh
Q 007930 560 NLLDSNAYRVKKEVTKRRS 578 (584)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~ 578 (584)
.++..+|-+....+++-|-
T Consensus 397 ~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred HHhccCchhhHHHHHHHHH
Confidence 9999999998888888775
No 196
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.54 E-value=3.8e-05 Score=64.53 Aligned_cols=174 Identities=18% Similarity=0.180 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..++.-|......|++++|+..|+...... +..|....+...++.++++.+++++|+...++-+...|.+.+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n--- 106 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN--- 106 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC---
Confidence 348888999999999999999999987663 335666789999999999999999999999999999886654
Q ss_pred HHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHcCCcchH--------------HHHHHHHHHHHHHcCChh
Q 007930 239 LEEAADRRLMALVYEAK-----ADYESALEHLVLASMVMIANGQENEV--------------AAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~la~~~~~~g~~~ 299 (584)
...+++..|.++... .+...+...+...-.+....++.+-. +.--..+|..|.+.|.+.
T Consensus 107 --~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 107 --ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred --hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 345677777776643 34444444444444444555554322 222356789999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 347 (584)
.|+..++.+++.+.. .+....++..+..+|..+|-.++|...-
T Consensus 185 AA~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 185 AAINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999887543 4667788889999999999999986553
No 197
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.54 E-value=0.0009 Score=64.63 Aligned_cols=185 Identities=18% Similarity=0.073 Sum_probs=130.5
Q ss_pred HcccHHHHHHHHHHHHHHHhcCCCCCChHHHH---HHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHhCCCCcccHH
Q 007930 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIA---NGLTEISAIYE----ALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408 (584)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 408 (584)
-.||-+.++..+.++.+. . +-..+... -.|+.....+. ...+.+.|.+.+....+.+|+. .
T Consensus 200 F~gdR~~GL~~L~~~~~~-~----~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s-------~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-E----NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS-------A 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-C----CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-------H
Confidence 468899999999988652 1 11222111 11122111122 2345677888888877777665 5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..+...|+++...|+.++|++.|++++..... .......+++.++.++..+.+|++|..++.+..+.. .
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~----~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~ 336 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSE----WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------K 336 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhh----HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------c
Confidence 66778999999999999999999998853222 122345678999999999999999999999988861 3
Q ss_pred CchHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRV-------EDAIEILEYILKVREEKLGTANPDIDDEKERLAEL 543 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~ 543 (584)
...+...+..|.|+...|+. ++|.+++.++-.+..+..|...|...-+.......
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~ 398 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKY 398 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHH
Confidence 34555667788999999999 89999999998888887776667655544444433
No 198
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.54 E-value=0.00037 Score=62.40 Aligned_cols=256 Identities=14% Similarity=0.111 Sum_probs=147.4
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHh-----ccCCchh
Q 007930 81 TISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLG-RFEEAVPVLERSIEVVDI-----GKGSDRA 154 (584)
Q Consensus 81 ~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~-----~~~~~~~ 154 (584)
.+..|+ ++.|..++.++-.... ..........+..+++.|......+ ++++|..+++++.++.+. ...++..
T Consensus 3 A~~~~~-~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGD-LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred chhhCC-HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 457888 9999999999988765 2223444677889999999999999 999999999999999744 2223333
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 155 LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 155 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
...+.++..++.+|...+.++.... ..++++....-++ +....+..--.+....++.+++.+.+.+++....-..
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~----~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG----NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC----CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 4566789999999999888764443 4444555444333 2233332222333337888888888888877543221
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHH--HcCChhHH--HHHHHHHH
Q 007930 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE-VAAIDVSIGNIYM--SLCRFDEA--IFSYQKGL 309 (584)
Q Consensus 235 ~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~--~~g~~~~A--~~~~~~al 309 (584)
. ... .+...+-.. .......+...+...+.. ......+ ..... .+-.++. ..++.... ++.....+
T Consensus 156 ~--~~~--~~l~~i~~l--~~~~~~~a~~~ld~~l~~--r~~~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~ 226 (278)
T PF08631_consen 156 S--NFD--SILHHIKQL--AEKSPELAAFCLDYLLLN--RFKSSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEELL 226 (278)
T ss_pred c--hHH--HHHHHHHHH--HhhCcHHHHHHHHHHHHH--HhCCChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHHH
Confidence 1 111 011111111 112334555666554432 2222222 22221 1222222 22222233 44444444
Q ss_pred HHHHHhhcCC-cccH----HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 007930 310 TVFKATRGED-HLSV----ASIFIRLADLYYRIGKLRESKSYCENALR 352 (584)
Q Consensus 310 ~~~~~~~~~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 352 (584)
+...+..+.. .+.. ...+.+.|...++.++|++|..+|+-++.
T Consensus 227 ~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 227 SIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4333222111 2222 23455668889999999999999998764
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.51 E-value=4.4e-07 Score=61.47 Aligned_cols=66 Identities=33% Similarity=0.368 Sum_probs=57.9
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 461 LQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 461 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
...|++++|+..|++++.. +|+...++..+|.+|...|++++|...+++++.. +|+....+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHHH
Confidence 5689999999999999999 8999999999999999999999999999999987 77776666655
Q ss_pred HH
Q 007930 541 AE 542 (584)
Q Consensus 541 ~~ 542 (584)
+.
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.51 E-value=0.00066 Score=60.27 Aligned_cols=301 Identities=12% Similarity=-0.009 Sum_probs=201.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 007930 163 QLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEA 242 (584)
Q Consensus 163 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 242 (584)
.-|.+-.--|+-..|...-.++-.+.. .+.+ .-++..-++.-...|+++.|.+-|+-++..-+ .. .
T Consensus 89 StGliAagAGda~lARkmt~~~~~lls----sDqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPE-tR-------l 154 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLS----SDQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDDPE-TR-------L 154 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhh----ccch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcChH-HH-------H
Confidence 345666677888888888777765532 2222 23444456677788999999999988775221 11 1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
.-+..|-.--...|+.+.|..+-+.+... -+....+....-...+..|+++.|+++.+....... .+.+...
T Consensus 155 lGLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~ae 226 (531)
T COG3898 155 LGLRGLYLEAQRLGAREAARHYAERAAEK------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAE 226 (531)
T ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHH
Confidence 11223333345679999999999887653 445555555555667789999999999987665422 1111112
Q ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 323 --VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 323 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
.+..+..-+.... ..+...|.....++.++.. +.+-.-..-+..++..|+..++-..++.+.+..+
T Consensus 227 R~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~p---------dlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-- 294 (531)
T COG3898 227 RSRAVLLTAKAMSLL-DADPASARDDALEANKLAP---------DLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-- 294 (531)
T ss_pred HHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCC---------ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--
Confidence 2222222222222 3457788888888888753 3445556678899999999999999988877533
Q ss_pred CCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 007930 401 PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 480 (584)
++ .++.+|....--+.++.-++++-.+.. + .++........+..-+..|++..|..--+.+..+
T Consensus 295 ---HP-------~ia~lY~~ar~gdta~dRlkRa~~L~s-l----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 295 ---HP-------DIALLYVRARSGDTALDRLKRAKKLES-L----KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred ---Ch-------HHHHHHHHhcCCCcHHHHHHHHHHHHh-c----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 34 345555555544566666666655422 2 2334677888899999999999999988888877
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 007930 481 EQECGSCHLDTLGVYSNLAATYDAL-GRVEDAIEILEYILKV 521 (584)
Q Consensus 481 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 521 (584)
.|.. .++..|+.+-... |+-.++..++-+++..
T Consensus 359 -------~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 -------APRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -------Cchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4443 6788889988776 9999999999999874
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=3.2e-06 Score=71.56 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
.++.|.-++..|+|..|...|..-++.+. .....+.++++||.+++.+|+++.|...|..+++- -|.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP-----~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP-----NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 56788888999999999999999888543 34456789999999999999999999999999886 366888
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEK 537 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~ 537 (584)
.+++++.||.+...+|+.++|...|+++++- .|....+.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~--------YP~t~aA~ 252 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKR--------YPGTDAAK 252 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CCCCHHHH
Confidence 8999999999999999999999999999997 56655444
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.50 E-value=0.00069 Score=60.15 Aligned_cols=302 Identities=17% Similarity=0.090 Sum_probs=201.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhh
Q 007930 77 LARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALA 156 (584)
Q Consensus 77 ~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (584)
.|.+....|+ -..|...-.++-.++.+ +. ...++..-+..-.-.|+++.|.+-|+-.+.. |..
T Consensus 90 tGliAagAGd-a~lARkmt~~~~~llss----Dq---epLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---------PEt 152 (531)
T COG3898 90 TGLIAAGAGD-ASLARKMTARASKLLSS----DQ---EPLIHLLEAQAALLEGDYEDARKKFEAMLDD---------PET 152 (531)
T ss_pred hhhhhhccCc-hHHHHHHHHHHHhhhhc----cc---hHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---------hHH
Confidence 3444445566 66777776666655442 22 2334445677778899999999999987642 222
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC
Q 007930 157 KFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236 (584)
Q Consensus 157 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (584)
..-.+..|-.--...|..+.|+.+-+.+... -|....+....-......|+++.|+++.+.......-..+.
T Consensus 153 RllGLRgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 153 RLLGLRGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred HHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence 2222333334446789999999999999887 45666666666677789999999999998876654333222
Q ss_pred CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhh
Q 007930 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 237 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 316 (584)
.....+..+...+.... ..+...|...-.++.++ .++..-.-..-+..++..|+..++-.+++.+.+.
T Consensus 225 aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~----- 292 (531)
T COG3898 225 AERSRAVLLTAKAMSLL-DADPASARDDALEANKL------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA----- 292 (531)
T ss_pred HHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-----
Confidence 22222222222222222 23466666666666553 5666666677889999999999999999988775
Q ss_pred cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 317 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
+.||.. +.+|....--+.++.-++++-.+..- .++.......++..-...|++..|..--+.+...
T Consensus 293 -ePHP~i-------a~lY~~ar~gdta~dRlkRa~~L~sl------k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 293 -EPHPDI-------ALLYVRARSGDTALDRLKRAKKLESL------KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred -CCChHH-------HHHHHHhcCCCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 124543 44455544455666677776665422 2445678888899999999999999888877776
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYVV-GRYGEARSSFESAVVK 437 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 437 (584)
.+.. .++..++.+-... |+-.+....+-+++..
T Consensus 359 ~pre--------s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRE--------SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cchh--------hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5543 4566778887655 9999999999998873
No 203
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.50 E-value=6.9e-05 Score=62.97 Aligned_cols=185 Identities=16% Similarity=0.060 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
+..+++-|......|++++|...|+......+-. +..-.+...++.++.+.+++++|+...++-+.... .+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s----~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP-----~~ 104 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS----PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP-----TH 104 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----CC
Confidence 5678888889999999999999999876443322 22256677899999999999999999999988654 35
Q ss_pred chHHHHHHHHHHHHHhh-----CCH---HHHHHHHHHHHHHHHHHhCCCCCch--------------HHHHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQL-----YRI---NEATELFEEARGVLEQECGSCHLDT--------------LGVYSNLAATYDA 504 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~-----g~~---~~A~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~la~~~~~ 504 (584)
+....+++..|.+++.. .+. .+|+..|++.+.. . |+.+-. +.--..+|..|.+
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---y--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k 179 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---Y--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLK 179 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---C--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888887643 233 3444455555444 2 212211 2223456889999
Q ss_pred cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 505 LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 505 ~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.|.+..|...++++++-+. +.+...+++..+.++|..+|-.++|. ..-..+....|++...
T Consensus 180 r~~~~AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~-~~~~vl~~N~p~s~~~ 240 (254)
T COG4105 180 RGAYVAAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAK-KTAKVLGANYPDSQWY 240 (254)
T ss_pred hcChHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCCcch
Confidence 9999999999999998743 35667889999999999999999998 5555555555555443
No 204
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.50 E-value=1e-05 Score=59.11 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
..+..-|..+...|+.+.|++.|.+++.+ -|..+.+|.+.+..+.-+|+.++|+..+++++++. |+..
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~t 111 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQT 111 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccc
Confidence 34555677888899999999999999999 78889999999999999999999999999999983 4444
Q ss_pred hhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 531 PDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
.....++..-|.+|..+|+.++|. ..++.+-...+.-
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~AR-~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAAR-ADFEAAAQLGSKF 148 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHH-HhHHHHHHhCCHH
Confidence 455678889999999999999998 7777665554443
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.48 E-value=1.4e-05 Score=60.88 Aligned_cols=113 Identities=19% Similarity=0.118 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
...++.-|...+..|+|++|++.|+.....+ |..+....+...|+.+|...|++++|+..+++-+++ -|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 5678889999999999999999999887762 445666789999999999999999999999999997 466
Q ss_pred ChhHHHHHHHHHHHHHHhch---------------HHHHHHHHHHHHHhhhhhhhHHHH
Q 007930 530 NPDIDDEKERLAELLKETGR---------------ARNRKGKSLENLLDSNAYRVKKEV 573 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~---------------~~~A~~~~l~~~~~~~~~~~~~~~ 573 (584)
||+...+++..|.++..+.. ..+|. ..++.++..-|++.....
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~-~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF-RDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH-HHHHHHHHHCcCChhHHH
Confidence 88889999999999999887 78888 888999988888776543
No 206
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.46 E-value=0.00045 Score=66.63 Aligned_cols=175 Identities=13% Similarity=0.012 Sum_probs=121.9
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhcCCcccH---HHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 007930 294 SLCRFDEAIFSYQKGLTVFKATRGEDHLSV---ASIFIRLADLYY----RIGKLRESKSYCENALRVCAKPAPATAPEEI 366 (584)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 366 (584)
-.||-+.++..+.++.+. ..+. .+.. ...|+.....+. ...+.+.|.+.+......+++ -
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i~---~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~---------s 266 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENIR---SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN---------S 266 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCcc---hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC---------c
Confidence 458889999998887652 1111 1111 111222211122 234566777777777776633 3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
...+...|.++...|+.++|++.+++++...... ......+++.++.++..+.+|++|..++.+..+. +.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~---~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~ 336 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW---KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SK 336 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH---HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cc
Confidence 5677888999999999999999999988533322 1222456789999999999999999999998874 34
Q ss_pred chHHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHHHHHhCCCCCch
Q 007930 447 AFFGIVLNQMGLACLQLYRI-------NEATELFEEARGVLEQECGSCHLDT 491 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~ 491 (584)
...+...+..|.++...|+. ++|.+++.++-....+..+...|-.
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E 388 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLE 388 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChH
Confidence 44566777889999999999 8888888888888777666555544
No 207
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=4.4e-06 Score=66.14 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA 447 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 447 (584)
..+-.-|.-++..|+|++|..-|..|+.+++.... .....+|.+.|.++.+++.++.|+..+.+++++ .+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~p 165 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NP 165 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cc
Confidence 34455677889999999999999999999988744 334567789999999999999999999999996 55
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 502 (584)
.+..++...+.+|..+.++++|++-|++.++. +|....+...++++-
T Consensus 166 ty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 166 TYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLP 212 (271)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcC
Confidence 67788899999999999999999999999998 777655555555443
No 208
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.46 E-value=6.5e-06 Score=79.62 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccH--------HHHHHHHHHHHHH
Q 007930 369 GLTEISAIYEALN---EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRY--------GEARSSFESAVVK 437 (584)
Q Consensus 369 ~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~a~~~ 437 (584)
.++..|.-+...+ +...|+.+|++++++.|+. +.++..++.++.....+ ..+....++++.+
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~-------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF-------TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 3344444444433 4779999999999998776 55555666666444322 2333333332221
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
. ..+..+.++..+|..+...|++++|...+++|+.+ +|. ..++..+|.++...|++++|.+.|++
T Consensus 414 ----~--~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 414 ----P--ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred ----c--cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 11222467888898988999999999999999999 775 67999999999999999999999999
Q ss_pred HHHH
Q 007930 518 ILKV 521 (584)
Q Consensus 518 a~~~ 521 (584)
|+.+
T Consensus 479 A~~L 482 (517)
T PRK10153 479 AFNL 482 (517)
T ss_pred HHhc
Confidence 9998
No 209
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.44 E-value=0.00064 Score=60.64 Aligned_cols=207 Identities=32% Similarity=0.399 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
.......+..+...+++..+...+....... ..+.....+...+..+...+++..++..+..++......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELE-------LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhh-------hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---
Confidence 3444555555555555665555555555420 012234455555555555555555555555555433222
Q ss_pred cccHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGV-MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 404 ~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
.......+. ++...|+++.|...+.+++.. . .. .......+...+..+...+++++|+..+.+++..
T Consensus 129 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 196 (291)
T COG0457 129 ----DLAEALLALGALYELGDYEEALELYEKALEL-D---PE-LNELAEALLALGALLEALGRYEEALELLEKALKL--- 196 (291)
T ss_pred ----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C---CC-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---
Confidence 011112222 555666666666666665331 0 00 0122334444444455556666666666666665
Q ss_pred HhCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 007930 483 ECGSCHLD-TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENL 561 (584)
Q Consensus 483 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~ 561 (584)
.+. ....+..++..+...+++++|...+..++.. .|........++..+...|+++++. ..+...
T Consensus 197 -----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 262 (291)
T COG0457 197 -----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--------DPDNAEALYNLALLLLELGRYEEAL-EALEKA 262 (291)
T ss_pred -----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--------CcccHHHHhhHHHHHHHcCCHHHHH-HHHHHH
Confidence 333 3455566666666666666666666666655 3333444455555555444455555 444444
Q ss_pred Hhhhh
Q 007930 562 LDSNA 566 (584)
Q Consensus 562 ~~~~~ 566 (584)
+...+
T Consensus 263 ~~~~~ 267 (291)
T COG0457 263 LELDP 267 (291)
T ss_pred HHhCc
Confidence 44333
No 210
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.44 E-value=4.7e-06 Score=76.72 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=99.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHH
Q 007930 374 SAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVL 453 (584)
Q Consensus 374 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 453 (584)
-.++...++++.|+..+++..+..++ +...++.++...++..+|+..+++++.. .+.....+
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe----------v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL 237 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE----------VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELL 237 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc----------HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 44555668899999999886654322 3345899999999999999999999963 33347888
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 454 NQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
...+..+...++++.|+...+++++. .|.....|+.|+.+|..+|+++.|+..+..+
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 89999999999999999999999999 8999999999999999999999999877644
No 211
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.8e-05 Score=67.96 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHh
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL---YRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~ 484 (584)
+.-|..||.+|..+|++..|...|.+++++ .+.....+..+|.++..+ ....++...+++++..
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~----- 222 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL----- 222 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----
Confidence 556778999999999999999999999997 233467888888888765 3567899999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 485 GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 485 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+|....+++.||..++..|++.+|...++..++.
T Consensus 223 ---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 223 ---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred ---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999986
No 212
>PRK11906 transcriptional regulator; Provisional
Probab=98.44 E-value=2e-05 Score=72.24 Aligned_cols=161 Identities=12% Similarity=-0.016 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHH
Q 007930 370 LTEISAIYEALN---EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV---------GRYGEARSSFESAVVK 437 (584)
Q Consensus 370 ~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~ 437 (584)
++..|......+ ..+.|+.+|.+++...+ ..+..+.++..++.++... .+..+|.+..++++++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~----ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSD----IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhccc----CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 345555554444 34677888888883221 1233366666777776554 2345666777777764
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
.+..+.++..+|.+....++++.|...|++|+.+ +|+.+.+++..|.+....|+.++|.+.+++
T Consensus 334 --------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 334 --------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred --------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4445789999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHH-HHHhchHHHHHHHHH
Q 007930 518 ILKVREEKLGTANPDIDDEKERLAEL-LKETGRARNRKGKSL 558 (584)
Q Consensus 518 a~~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~l 558 (584)
++++ +|....+-..--.+ ..--...++|+.-++
T Consensus 398 alrL--------sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 398 SLQL--------EPRRRKAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred Hhcc--------CchhhHHHHHHHHHHHHcCCchhhhHHHHh
Confidence 9998 77665544332222 233456777773333
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.41 E-value=1.8e-06 Score=59.37 Aligned_cols=67 Identities=31% Similarity=0.328 Sum_probs=59.5
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007930 457 GLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536 (584)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~ 536 (584)
..+|...+++++|++++++++.+ +|+....+...|.++..+|++++|...++++++. .|+...+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--------~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL--------SPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--------CCCcHHH
Confidence 56788999999999999999999 8889999999999999999999999999999987 5655554
Q ss_pred HHH
Q 007930 537 KER 539 (584)
Q Consensus 537 ~~~ 539 (584)
...
T Consensus 66 ~~~ 68 (73)
T PF13371_consen 66 RAL 68 (73)
T ss_pred HHH
Confidence 443
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.41 E-value=1.1e-05 Score=61.38 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
...++.-|.-.+..|+|.+|++.|+.....+. ..+....+...++.+|+..+++++|+..+++.+++ .|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-----~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-----FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 45566889999999999999999998876432 23445678899999999999999999999999999 688
Q ss_pred CCchHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHH
Q 007930 488 HLDTLGVYSNLAATYDALGR---------------VEDAIEILEYILKV 521 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~a~~~ 521 (584)
||...-+++..|.++..+.. ..+|...|++.+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 88999999999999998876 67788888877776
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00019 Score=59.94 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF 448 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 448 (584)
+.+.+..++...|.|.-....+.+.++..+.. . ......+|.+..+.|+.+.|..+|++.-+....+ .....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~---~---p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL--~~~q~ 250 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ---E---PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL--DGLQG 250 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc---c---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hccch
Confidence 33444455555555555555555555422111 1 2233345555555555555555555544322211 12233
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
...+..+.+.++...+++.+|...+.+++.. ++..+.+..+-|.|..-.|+..+|++..+.++++
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344445555555555555555555555555 4445555555555555555555555555555554
No 216
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.37 E-value=0.00022 Score=56.21 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=120.4
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 007930 210 HIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289 (584)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 289 (584)
..+.=+.+....-..+.+++.|... ..+.+|......|++.+|..+|++++. |........+..++
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApTvq---------nr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA 131 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPTVQ---------NRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLA 131 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchhHH---------HHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHH
Confidence 3344455555555555555554433 367899999999999999999999864 34445566788999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
+..+..+++..|...+++..+.-. ....+.....+|..+..+|++.+|...|+.++..+.. ...
T Consensus 132 ~Aqfa~~~~A~a~~tLe~l~e~~p------a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----------~~a 195 (251)
T COG4700 132 QAQFAIQEFAAAQQTLEDLMEYNP------AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----------PQA 195 (251)
T ss_pred HHHHhhccHHHHHHHHHHHhhcCC------ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----------HHH
Confidence 999999999999999998877621 1234456677899999999999999999999998743 345
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
....+..+..+|+.++|..-+....+.....
T Consensus 196 r~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 196 RIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 5667888999999999888777666554443
No 217
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.36 E-value=0.0016 Score=57.96 Aligned_cols=207 Identities=29% Similarity=0.342 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 360 (584)
........+..+...+++..+...+...... ...+.....+..++..+...+++..++..+..++......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 128 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--- 128 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---
Confidence 3566778888999999999999999988764 0157778888999999999999999999999998865331
Q ss_pred CChHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 361 TAPEEIANGLTEISA-IYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 361 ~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
.......+. ++...|+++.|...+.+++...+. .......+...+..+...++++.|+..+.+++....
T Consensus 129 ------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 198 (291)
T COG0457 129 ------DLAEALLALGALYELGDYEEALELYEKALELDPE----LNELAEALLALGALLEALGRYEEALELLEKALKLNP 198 (291)
T ss_pred ------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc
Confidence 122233333 899999999999999999553221 122344555666668889999999999999998632
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.. ....+..++..+...+++++|...+..++.. .+.....+..++..+...+.++++...+.+++
T Consensus 199 ~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 199 DD-------DAEALLNLGLLYLKLGKYEEALEYYEKALEL--------DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred cc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhh--------CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 3567889999999999999999999999998 55556677888888887788999999999999
Q ss_pred HH
Q 007930 520 KV 521 (584)
Q Consensus 520 ~~ 521 (584)
..
T Consensus 264 ~~ 265 (291)
T COG0457 264 EL 265 (291)
T ss_pred Hh
Confidence 87
No 218
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.35 E-value=0.00015 Score=60.72 Aligned_cols=241 Identities=15% Similarity=0.074 Sum_probs=160.0
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH
Q 007930 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY 335 (584)
Q Consensus 256 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 335 (584)
.+.++|+..|++.+++- ......-..++-.+..+++.+|+|++-.+.|.+.+...+.....+.. -.+.+.+-..-.
T Consensus 41 ~~p~~Al~sF~kVlelE--gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS--EKsIN~IlDyiS 116 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE--GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS--EKSINSILDYIS 116 (440)
T ss_pred cCHHHHHHHHHHHHhcc--cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHh
Confidence 47899999999887753 22233445677888999999999999999999999887665433321 122233333223
Q ss_pred HcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC-----cccHHHH
Q 007930 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY-----HSTIAGI 410 (584)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~ 410 (584)
...+.+--.++|+..++..+.. .+......+-..||.+|+..|+|.+-.+.+.+.-..+...-|. ...+..+
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdA---KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDA---KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhh---hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 3445555556666666655442 2222334556679999999999999888888877777665442 2345566
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
|..-..+|-.+.+-.+-...|++++.+-..+. ++...+.+...=|..+.+.|++++|-.-|-+|.+-+.+.+.+.. .
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP--HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR-t 270 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIP--HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR-T 270 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCC--chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch-h
Confidence 66667788888888888899999998754432 33334444444567788899999999998888877665544322 1
Q ss_pred hHHHHHHHHHHHHHcC
Q 007930 491 TLGVYSNLAATYDALG 506 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g 506 (584)
..--|..||..+.+.|
T Consensus 271 tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 2223455666666654
No 219
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.31 E-value=3.9e-06 Score=72.34 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
+...|.-|+.+|+|++|+.+|.+++.. .|..+..+.+.+.+|.++.+|..|......|+.+ +..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence 345788999999999999999999998 7877788999999999999999999999999999 788
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 533 IDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+..+|.+.+.+-..+|+..+|+ +..+.+|...|++..
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAK-kD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAK-KDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH-HhHHHHHhhCcccHH
Confidence 8999999999999999999999 999999988887543
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.31 E-value=3.7e-06 Score=76.81 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=63.4
Q ss_pred CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLG---VYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
..|.....++++|.+|...|+|++|+..|++++++ +|+... +++++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567899999999999999999999999999999 777664 5999999999999999999999999997
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.28 E-value=4.2e-06 Score=57.56 Aligned_cols=68 Identities=25% Similarity=0.268 Sum_probs=61.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHHH
Q 007930 498 LAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVT 574 (584)
Q Consensus 498 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~ 574 (584)
|..+|...+++++|++++++++.+ +|+....+...|.++..+|++.+|. ..++.+++..|+......+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~-~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEAL-EDLERALELSPDDPDARAL 68 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHH-HHHHHHHHHCCCcHHHHHH
Confidence 457899999999999999999999 8999999999999999999999999 9999999998877665533
No 222
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.27 E-value=0.0028 Score=56.86 Aligned_cols=253 Identities=14% Similarity=0.066 Sum_probs=147.6
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH-c---CCc----chH
Q 007930 211 IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKA-DYESALEHLVLASMVMIA-N---GQE----NEV 281 (584)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~-~---~~~----~~~ 281 (584)
...|+++.|..++.++-..............+..++++|......+ +++.|..+++++.+++.. . ... ...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 5789999999999999887753332234457888999999999999 999999999999999754 1 112 245
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
..++..++.+|...+.++...+ ..++++..+... +..+..+..--.+....++.+.+.+.+.+.+....-.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~----~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~---- 154 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEY----GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS---- 154 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhC----CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc----
Confidence 6778889999999888764444 444444444433 3333333222233333788899988888888764310
Q ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc--cHHHH--HHHHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG--RYGEA--RSSFESAVVK 437 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A--~~~~~~a~~~ 437 (584)
... ..........+. ......|...+...+...-....+. ..... -+..++...+ +.... ++..+..+..
T Consensus 155 -e~~-~~~~l~~i~~l~-~~~~~~a~~~ld~~l~~r~~~~~~~--~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~~~ 228 (278)
T PF08631_consen 155 -ESN-FDSILHHIKQLA-EKSPELAAFCLDYLLLNRFKSSEDQ--WLEKL-VLTRVLLTTQSKDLSSSEKIESLEELLSI 228 (278)
T ss_pred -cch-HHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHhCCChhH--HHHHH-HHHHHHHHcCCccccchhHHHHHHHHHHH
Confidence 011 111111111112 2334566677766665443332221 22221 1222222222 22222 4444444443
Q ss_pred HHHc-CCCCCch----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 438 LRAS-GESKSAF----FGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 438 ~~~~-~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.... ..+-... .-..+.+.|...+..++|++|..+|+-++.
T Consensus 229 v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 229 VEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2222 2221111 123456678889999999999999998774
No 223
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.26 E-value=3.7e-06 Score=56.88 Aligned_cols=59 Identities=29% Similarity=0.377 Sum_probs=53.3
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 503 DALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 503 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
...|++++|+..|++++.. +|++..++..++.++...|++++|. ..++.++..+|+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAE-ELLERLLKQDPDNPE 60 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHH-HHHHCCHGGGTTHHH
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCHHH
Confidence 5789999999999999998 8999999999999999999999999 999999988887543
No 224
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.26 E-value=2.2e-06 Score=51.28 Aligned_cols=41 Identities=46% Similarity=0.732 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
+.++.+||.+|..+|++++|..++++++.+.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46889999999999999999999999999999999999985
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.25 E-value=1.3e-05 Score=73.37 Aligned_cols=74 Identities=15% Similarity=-0.020 Sum_probs=64.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
...+|+....++++|..++..|+ |++|+..|++|+++ .+.+.....+++++|.+|..+|++++|+..++++++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGR-VKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44789999999999999999999 99999999999997 223333335699999999999999999999999998
Q ss_pred H
Q 007930 144 V 144 (584)
Q Consensus 144 ~ 144 (584)
+
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 6
No 226
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.20 E-value=9e-06 Score=70.17 Aligned_cols=105 Identities=23% Similarity=0.243 Sum_probs=91.4
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 492 (584)
..|.-|+++|+|++|+.+|.+++.. .+..+..+.+.+.+|+++.++..|..-+..|+.+ +....
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~ 165 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYV 165 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHH
Confidence 5688999999999999999999984 4445678889999999999999999999999999 77788
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
.+|...+.+-..+|+..+|.+.++.++++ .|++.+....++
T Consensus 166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L--------EP~~~ELkK~~a 206 (536)
T KOG4648|consen 166 KAYSRRMQARESLGNNMEAKKDCETVLAL--------EPKNIELKKSLA 206 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHhh--------CcccHHHHHHHH
Confidence 89999999999999999999999999998 677655444333
No 227
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.0027 Score=53.91 Aligned_cols=231 Identities=10% Similarity=0.030 Sum_probs=153.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 007930 162 MQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEE 241 (584)
Q Consensus 162 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (584)
..++.-....+++++|+..|.+.+......-...-.+.-.+...++.+|...|++..--+......+....... +..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk---~k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK---PKI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc---hhH
Confidence 45666677888999999999888765111000001233457788999999999988766666555554444332 222
Q ss_pred HHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 242 AADRRLMALV-YEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 242 a~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
+.+...+..- -.....++.-+..+...++...+....-.....-..+..+++..|.|.+|+......+.-+++.. +.
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK 161 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DK 161 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cc
Confidence 2233333222 22345677777777777766655444444445556788899999999999999999888877764 45
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEE-IANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
+....++..-..+|....+..++...+..+.......+ -+|. .+..-..-|..++...+|..|..+|-++++-+..
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y---CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY---CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC---CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 66777777778899999999998888887776665432 2222 2333333466677788999999999999887654
Q ss_pred C
Q 007930 400 T 400 (584)
Q Consensus 400 ~ 400 (584)
.
T Consensus 239 l 239 (421)
T COG5159 239 L 239 (421)
T ss_pred c
Confidence 4
No 228
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0039 Score=54.45 Aligned_cols=303 Identities=14% Similarity=0.094 Sum_probs=189.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCc-hhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSD-RALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPR 198 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (584)
..+.......++++++..+.+.+.........+ .....-.+...+|..+...|++.+-....+..-.....+. .+.
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---Kak 85 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAK 85 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHH
Confidence 344555566677888888888776432111111 1111124578899999999999887776666555443321 233
Q ss_pred HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 199 VAETCRYLAEAH-IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 199 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
.+.....+-... ..-+..+.-+.++..+++....... ....-..-..+..+|...++|.+|+......+..+++..+
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDD 163 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDD 163 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 344444444333 3334566777778888777665442 2222333456788999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
......++..-...|+...+..+|...+..|.......+-+ ....+..-..-|.++..-.+|..|..||-++.+-+..
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp-PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s- 241 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP-PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS- 241 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC-HHHHHHHHHhccceeecccccchHHHHHHHHHccccc-
Confidence 99999999999999999999999999888887765554421 1112222233366667778999999999999998765
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH--hccHHHHHHHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV--VGRYGEARSSFESAV 435 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~ 435 (584)
..++.....++-.+-.+-...+..++--..+..=..+. ..+.. ..+...++..+.+ ..+|+.|+.-|..-+
T Consensus 242 --~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y~g~~---i~AmkavAeA~~nRSLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 242 --LDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--YAGRD---IDAMKAVAEAFGNRSLKDFEKALADYKKEL 314 (411)
T ss_pred --cCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--ccCcc---hHHHHHHHHHhcCCcHHHHHHHHHHhHHHH
Confidence 33333444444444444555566665444443222211 11111 3344455555543 456777777776655
Q ss_pred H
Q 007930 436 V 436 (584)
Q Consensus 436 ~ 436 (584)
.
T Consensus 315 ~ 315 (411)
T KOG1463|consen 315 A 315 (411)
T ss_pred h
Confidence 4
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00043 Score=60.05 Aligned_cols=163 Identities=13% Similarity=0.006 Sum_probs=98.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 007930 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIAN 368 (584)
Q Consensus 289 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 368 (584)
+.+....|++.+|....++.++- .|....++..--.+++..|+.+.-...+++.+... ..+.|-...
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-----n~dlp~~sY 176 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-----NADLPCYSY 176 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-----CCCCcHHHH
Confidence 33445567777776666666664 56555566666666677777777666666665543 233344445
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF 448 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 448 (584)
....++..+...|-+++|.+..++++++.+.. ..+...++.++...|++.++.++..+.-...+. ..-.
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D-------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~ml 245 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINRFD-------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWML 245 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCCcc-------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhHH
Confidence 55556666677777777777777777665443 455556667777777777777776665544332 1111
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEE 475 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (584)
...-|...+.++...+.|+.|++.|..
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 222344556666666777777777754
No 230
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0065 Score=51.13 Aligned_cols=242 Identities=14% Similarity=0.058 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH---------hc-cCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD---------IG-KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYES 183 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 183 (584)
....|...-.++.++..+++|..-++..-++.. .. .+......-+.....-+.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 344555555666677777777665544322210 00 11111122233344556677777888777766655
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHH
Q 007930 184 GLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALE 263 (584)
Q Consensus 184 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~ 263 (584)
.....+++ -.........+..++.+++-+. .+.+.+..++.-.|+|.-.+.
T Consensus 148 L~~~V~~i---------------i~~~e~~~~~ESsv~lW~KRl~--------------~Vmy~~~~~llG~kEy~iS~d 198 (366)
T KOG2796|consen 148 LKTVVSKI---------------LANLEQGLAEESSIRLWRKRLG--------------RVMYSMANCLLGMKEYVLSVD 198 (366)
T ss_pred HHHHHHHH---------------HHHHHhccchhhHHHHHHHHHH--------------HHHHHHHHHHhcchhhhhhHH
Confidence 54442221 1111122222444555544433 236677788888889988888
Q ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHH
Q 007930 264 HLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRES 343 (584)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 343 (584)
.+.+.+.. +++........+|.+.++.||.+.|..+++.+-+...... +-.....+..+.+.+|.-.+++.+|
T Consensus 199 ~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--~~q~~~~V~~n~a~i~lg~nn~a~a 271 (366)
T KOG2796|consen 199 AYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--GLQGKIMVLMNSAFLHLGQNNFAEA 271 (366)
T ss_pred HHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--ccchhHHHHhhhhhheecccchHHH
Confidence 88877662 4455566678899999999999999999987765544443 1234556777888888899999999
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 344 KSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 344 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
...+.+++....+ .+.+.++.|.|....|+..+|++.++.++++.|..
T Consensus 272 ~r~~~~i~~~D~~---------~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 272 HRFFTEILRMDPR---------NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHhhccccCCC---------chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999888776433 35677888999999999999999999888776654
No 231
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.95 E-value=0.0024 Score=46.16 Aligned_cols=120 Identities=20% Similarity=0.221 Sum_probs=87.0
Q ss_pred HHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 199 VAETCRYLAEA--HIQAMQFDEAENLCKKILEIHREHGHSASLE----EAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 199 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
++.+|..|+.. ....|-|++|...+.+++++....+.....+ .+.++-.|+..+..+|+|++++...++++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 44555555444 4567899999999999999988766543222 46778889999999999999999999999988
Q ss_pred HHcCCcc-----hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 273 IANGQEN-----EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 273 ~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
...+... ..+.+.++.+..+...|+.++|+..|+.+-++..+..|+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 8766522 234455788899999999999999999999987776554
No 232
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.95 E-value=0.0027 Score=45.88 Aligned_cols=120 Identities=23% Similarity=0.181 Sum_probs=88.5
Q ss_pred HHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCCc-----ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 366 IANGLTEISAI--YEALNEHEEALKLLQKAMKLLEDTPGYH-----STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 366 ~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
++.+|..|+.. ....|-|++|...+.++.++....+... -.-+.++..|+..+..+|+|++++..-++++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 45566666544 4456789999999999999988875531 1235677889999999999999999999999988
Q ss_pred HHcCCCCCc---hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 439 RASGESKSA---FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 439 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
..-++-+.. .+..+.++.+..+...|+.++|+..|+.+.++..+..|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 876654332 34556678899999999999999999999999877655
No 233
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.92 E-value=2.5e-05 Score=46.59 Aligned_cols=41 Identities=37% Similarity=0.336 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
+.++.++|.+|..+|++++|..++++++.+.++..|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999998885
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.92 E-value=0.0011 Score=53.00 Aligned_cols=108 Identities=21% Similarity=0.174 Sum_probs=81.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC---C-Cc----------hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGES---K-SA----------FFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~-~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
..|......|+.+.++..+++++.+++...-. . .. ....++..++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 34555666778888888888888877532111 1 10 1234566778888899999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
. +|..-.++..+..+|...|+..+|+..|+++...+.+-+|.
T Consensus 91 ~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 91 L--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp H--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred c--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 9 89998999999999999999999999999999999988874
No 235
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.91 E-value=0.0066 Score=56.38 Aligned_cols=148 Identities=13% Similarity=0.089 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh
Q 007930 76 KLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL 155 (584)
Q Consensus 76 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (584)
..-...++..+ +++-++...+|+++ +|+-+.+|..|+.-. .....+|..+|+++++..+...+....
T Consensus 173 ~IMq~AWRERn-p~aRIkaA~eALei---------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~- 239 (539)
T PF04184_consen 173 EIMQKAWRERN-PQARIKAAKEALEI---------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQF- 239 (539)
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHh---------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhh-
Confidence 33344556666 99999999999997 566777877776532 345689999999999887554332211
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Q 007930 156 AKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235 (584)
Q Consensus 156 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (584)
....|..-+.. .. .+..-...+...+|.|..+.|+.++|++.++..++..+...
T Consensus 240 ------------~~~~g~~~e~~--~~-----------Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~- 293 (539)
T PF04184_consen 240 ------------LQHHGHFWEAW--HR-----------RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD- 293 (539)
T ss_pred ------------hhcccchhhhh--hc-----------cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-
Confidence 01111111110 00 00111233445566666666666666666666665543211
Q ss_pred CCCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 236 SASLEEAADRRLMALVYEAKADYESALEHLVL 267 (584)
Q Consensus 236 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~ 267 (584)
...++.++..++...+.|.++...+.+
T Consensus 294 -----~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 294 -----NLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred -----hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 123456666666666666666655554
No 236
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00089 Score=55.41 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC---CCch-------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES---KSAF-------FGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.++..-|.-++..|+|.+|...|..|+..++.+.-. ..+. ....+.+.++|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 455677889999999999999999999988766211 1111 234678899999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
. +|....+++..|.+....=+..+|...|.+++++ +|..+.+...-
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l--------dpslasvVsrE 304 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL--------DPSLASVVSRE 304 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--------ChhhHHHHHHH
Confidence 8 8999999999999999999999999999999998 88776665443
No 237
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.90 E-value=2.6e-05 Score=46.79 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAE 542 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~ 542 (584)
.++..+|.+|..+|++++|++.|+++++. +|++..++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 47889999999999999999999999998 8999999998875
No 238
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.048 Score=60.63 Aligned_cols=145 Identities=11% Similarity=0.053 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh
Q 007930 383 HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ 462 (584)
Q Consensus 383 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (584)
..+-+-.+++++-......+....++.+|...|++....|+++.|..++-.|.+. . .+.+....|..+..
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--------r--~~~i~~E~AK~lW~ 1714 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--------R--LPEIVLERAKLLWQ 1714 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--------c--cchHHHHHHHHHHh
Confidence 4455555566555444444556778999999999999999999999988888763 1 35788899999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhC-C--CCC------chHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHhCCCCh
Q 007930 463 LYRINEATELFEEARGVLEQECG-S--CHL------DTLGVYSNLAATYDALGRV--EDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 463 ~g~~~~A~~~~~~a~~~~~~~~~-~--~~~------~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
.|+-..|+..+++.++....-.. + +.| ....+...++.-....|++ .+-+++|..+.++ +|
T Consensus 1715 ~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ 1786 (2382)
T KOG0890|consen 1715 TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LP 1786 (2382)
T ss_pred hccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cc
Confidence 99999999999999976533211 1 001 1122444555555566664 3456778888887 56
Q ss_pred hHHHHHHHHHHHHH
Q 007930 532 DIDDEKERLAELLK 545 (584)
Q Consensus 532 ~~~~~~~~l~~~~~ 545 (584)
+....++.+|..|.
T Consensus 1787 ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1787 EWEDKHYHLGKYYD 1800 (2382)
T ss_pred cccCceeeHHHHHH
Confidence 55555666664433
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.88 E-value=0.013 Score=53.57 Aligned_cols=178 Identities=15% Similarity=0.077 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHhcCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR---IGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~ 358 (584)
..+..++-..|....+|+.-+.+.+..-.+ ...+......+....|.++.+ .|+.++|+..+..++.....
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-- 214 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-- 214 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC--
Confidence 445567777788888998887777664433 111123455667788888888 89999999999997655422
Q ss_pred CCCChHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEAL---------NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARS 429 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 429 (584)
...+++..+|.+|... ...++|+..|.++.++.++. .+ -.|++.++...|...+...
T Consensus 215 ------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~-----GIN~AtLL~~~g~~~~~~~ 280 (374)
T PF13281_consen 215 ------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YS-----GINAATLLMLAGHDFETSE 280 (374)
T ss_pred ------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cc-----hHHHHHHHHHcCCcccchH
Confidence 2346777888887543 24677888888887776433 11 1366777777776444443
Q ss_pred HHHHHH-HH---HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 430 SFESAV-VK---LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 430 ~~~~a~-~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
-.++.. .+ ..+.+........+.+..++.+....|++++|.+.++++..+
T Consensus 281 el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 281 ELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 333333 21 212222223333456667788888899999999999999987
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.86 E-value=0.0037 Score=57.91 Aligned_cols=204 Identities=12% Similarity=0.075 Sum_probs=128.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC--------
Q 007930 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT-------- 361 (584)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------- 361 (584)
.-..+..+...-++...+|+++ +|+.+.+|..|+.-. .....+|.++++++++..+......
T Consensus 176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 3344567778888888899988 677888887776532 2335778888888887665443111
Q ss_pred --------ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 362 --------APEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 362 --------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
+..-...+...+|.+..+.|+.++|++.++..++..+.. ....+..++..++...+.|.++...+.+
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-----~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-----DNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-----chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 001124456789999999999999999999988765432 2356778999999999999999888777
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHh-hCC---------------HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Q 007930 434 AVVKLRASGESKSAFFGIVLNQMGLACLQ-LYR---------------INEATELFEEARGVLEQECGSCHLDTLGVYSN 497 (584)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 497 (584)
--++ .-+..+...+.-+.+-.+ .++ -..|.+.+.+|++. +|.++..+..
T Consensus 321 YdDi-------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef--------NPHVp~YLLe 385 (539)
T PF04184_consen 321 YDDI-------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF--------NPHVPKYLLE 385 (539)
T ss_pred hccc-------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh--------CCCCchhhhc
Confidence 4321 112223333333333222 111 13466778888877 6665543332
Q ss_pred H------HHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 498 L------AATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 498 l------a~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
+ -.-+.+.|+ .||+.|---.+..+++
T Consensus 386 ~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~ 417 (539)
T PF04184_consen 386 MKSLILPPEHILKRGD-SEAIAYAFFHLQHWKR 417 (539)
T ss_pred cCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhc
Confidence 2 112344554 6777666666655544
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.018 Score=50.52 Aligned_cols=165 Identities=10% Similarity=-0.071 Sum_probs=128.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 007930 207 AEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDV 286 (584)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (584)
+.+..-.|++.+|....++.++-+|... .++...-..++.+|+.......+++.+.. -+.+.|-...+.-
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDl--------la~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDL--------LAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHG 179 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhh--------hhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHH
Confidence 4456678999999999999998776543 22555566778888888888888765431 1445666677788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 007930 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEI 366 (584)
Q Consensus 287 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 366 (584)
.++..+...|-|++|++..++++++ ++....+....+.++...|++.++.++..+.-...+. .....
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-----s~mla 246 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-----SWMLA 246 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh-----hhHHH
Confidence 8899999999999999999999998 7888899999999999999999999998887655433 12223
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
..-|-..+.++...+.++.|++.|..-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 3445567888888899999999998744
No 242
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.83 E-value=0.029 Score=52.90 Aligned_cols=137 Identities=12% Similarity=0.052 Sum_probs=101.9
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH-HHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG-VLEQ 482 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~ 482 (584)
.......+...+.+..+.|+++.|...+.++......... ....+....+.++...|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~----~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES----LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 4455678889999999999999999999987764221111 1245677788999999999999999998888 3332
Q ss_pred Hh-------------------------CCCCCchHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 483 EC-------------------------GSCHLDTLGVYSNLAATYDAL------GRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 483 ~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
.. .......+.++..+|...... +..+++...|++++++ +|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DP 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------Ch
Confidence 21 011233456777778777777 8889999999999998 88
Q ss_pred hHHHHHHHHHHHHHHhchHHH
Q 007930 532 DIDDEKERLAELLKETGRARN 552 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~ 552 (584)
....+++.+|..+...-+.+.
T Consensus 290 ~~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 888999999988887654443
No 243
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.093 Score=58.54 Aligned_cols=144 Identities=10% Similarity=0.048 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 007930 340 LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLY 419 (584)
Q Consensus 340 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (584)
..+-+-.+++++-..... .......+.+|...|++....|+++.|..++-+|.+.. ...++...|..+.
T Consensus 1645 ~~epILa~RRs~l~~~~~--~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW 1713 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMR--SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLW 1713 (2382)
T ss_pred HHhHHHHHHHHHHHHhcc--ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHH
Confidence 444444555555443221 23356788999999999999999999998888776653 2456778999999
Q ss_pred HhccHHHHHHHHHHHHHHHHHc-CCC--------CCchHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHHHHhCCCC
Q 007930 420 VVGRYGEARSSFESAVVKLRAS-GES--------KSAFFGIVLNQMGLACLQLYRI--NEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~-~~~--------~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..|+-..|+..+++.++..... ..+ +......+...++......+++ +.-+++|+.+.++ +
T Consensus 1714 ~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l 1785 (2382)
T KOG0890|consen 1714 QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------L 1785 (2382)
T ss_pred hhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------c
Confidence 9999999999999999764432 111 0011122334444444455553 3456777888877 5
Q ss_pred CchHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATY 502 (584)
Q Consensus 489 ~~~~~~~~~la~~~ 502 (584)
|..-..++.+|.-|
T Consensus 1786 ~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1786 PEWEDKHYHLGKYY 1799 (2382)
T ss_pred ccccCceeeHHHHH
Confidence 54445556666433
No 244
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00052 Score=56.74 Aligned_cols=111 Identities=19% Similarity=0.093 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCch----------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDT----------LGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
.++..-|+-++..|+|++|...|..|+...+.+.-.+.|.. ...+.+.+.|+...|++-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 46777888999999999999999999998887765444432 23578889999999999999999999998
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 521 VREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
. +|.+..+++.-|.+....=+..+|. ..+..+++.+|....
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~-~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAK-ADLQKVLELDPSLAS 299 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHH-HHHHHHHhcChhhHH
Confidence 7 9999999999999999999999998 889999988876443
No 245
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.81 E-value=0.00077 Score=56.94 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=82.2
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-----CCchHHHH
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC-----HLDTLGVY 495 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 495 (584)
...+++|++.|.-|+-.....+.. +...+.++..+|++|...|+.+....++++|++.+.+..... .-+...+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 456788999888888776555443 346788999999999999999999999999999888876532 22446789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+.+|.+..+.|++++|..+|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999884
No 246
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00035 Score=60.52 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
.+.-+-.-|+-|++..+|..|+..|.+.+... ..++...+..|.+.+-+....|+|..|+.-..+++.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 56667778999999999999999999999764 4445555577999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE 232 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (584)
+|....+++.-|.|++.+.++.+|..+++..+.+...
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8999999999999999999999999999999877644
No 247
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00032 Score=57.77 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=88.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCch
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDT 491 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 491 (584)
..-|..++.-.+|..|+..|.+++.+ +|..+..+.+.+.++++..+++.+..-..+++++ .|+.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~ 77 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNL 77 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHH
Confidence 34566777778899999999999985 5667788999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
+..++.+|.+......+++|+..+.++..+.+...
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999877643
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.79 E-value=0.0084 Score=54.74 Aligned_cols=181 Identities=15% Similarity=0.057 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHcCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV---VGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
..+..++-..|....+|+.-+.+.+..-.+ +... ......+....|.++.+ .|+.++|+..+..++..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~--~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~------ 211 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD--VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES------ 211 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc--hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc------
Confidence 456667777889999998888777654433 2110 11223455677888888 89999999999887553
Q ss_pred CCCchHHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQL---------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
.....+.++..+|.+|-.. ...++|+..|.++.++ .++. ..-.|++.++...|...+...-
T Consensus 212 -~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--------~~~~-Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 212 -DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--------EPDY-YSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred -cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--------Cccc-cchHHHHHHHHHcCCcccchHH
Confidence 1223457888888888643 2356677777777666 3332 3446777788888876555555
Q ss_pred HHHHHHHHHHHhC----CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 515 LEYILKVREEKLG----TANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 515 ~~~a~~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
.++....+....| .+....-+.+..++++..-.|++++|. ..++.++...|+
T Consensus 282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~-~a~e~~~~l~~~ 337 (374)
T PF13281_consen 282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI-QAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH-HHHHHHhhcCCc
Confidence 5554433333332 223344566778889999999999999 888887766554
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.78 E-value=0.042 Score=53.23 Aligned_cols=124 Identities=14% Similarity=0.070 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH-----HHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEI-----QIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
.|..++......-.++-|...|-++-.. .+++ .....--...+.+-..-|+|++|.+.|-.+-+..
T Consensus 694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-----~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-----RTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-----hhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 3777777777666777777666554221 1110 0000111234555566688888888875542211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 007930 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKG 308 (584)
Q Consensus 235 ~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 308 (584)
.-..++...|+|-...++++.. ....++.....++.++|..+..+..+++|.++|.+.
T Consensus 765 ------------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ------------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ------------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1123344555555544444321 011234455667777788777777777777777664
No 250
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.75 E-value=0.0025 Score=52.21 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHH
Q 007930 263 EHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRE 342 (584)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 342 (584)
+-++.-++..+.......+..++..+|..|...|++++|++.|.++.+.... .......+..+..+....+++..
T Consensus 17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHH
Confidence 3344444444455556777889999999999999999999999998776322 34567778888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 343 SKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 343 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
...++.++-..... +.+..........-|..+...++|.+|...|-.+...+
T Consensus 92 v~~~i~ka~~~~~~---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 92 VEKYIEKAESLIEK---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 99999999998876 44444445555666777788899999998887765443
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.71 E-value=0.00011 Score=44.08 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 500 (584)
.++..+|.+|...|++++|++.|+++++. +|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999999 8999999988875
No 252
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.078 Score=53.91 Aligned_cols=266 Identities=15% Similarity=0.129 Sum_probs=130.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL 239 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (584)
+|..+|.+....|...+|++.|-++- + ...|.....+..+.|.|++-+.++..+.+...+..
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyikad----------D---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~----- 1167 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKAD----------D---PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY----- 1167 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhcC----------C---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-----
Confidence 35666666666666666666554431 1 22344444555566666666666655544333221
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
+-..+...|.+.++..+-.+++. .+..+.+ ...|.-++..|.|+.|.-+|...
T Consensus 1168 ----id~eLi~AyAkt~rl~elE~fi~-----------gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~v----------- 1220 (1666)
T KOG0985|consen 1168 ----IDSELIFAYAKTNRLTELEEFIA-----------GPNVANI-QQVGDRCFEEKMYEAAKLLYSNV----------- 1220 (1666)
T ss_pred ----chHHHHHHHHHhchHHHHHHHhc-----------CCCchhH-HHHhHHHhhhhhhHHHHHHHHHh-----------
Confidence 11223334444444444333321 2222222 34555666666666555444332
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.-+..|+..+..+|+|..|....+++-.. .+|...+......+.+.-|.-+
T Consensus 1221 -----SN~a~La~TLV~LgeyQ~AVD~aRKAns~--------------ktWK~VcfaCvd~~EFrlAQiC---------- 1271 (1666)
T KOG0985|consen 1221 -----SNFAKLASTLVYLGEYQGAVDAARKANST--------------KTWKEVCFACVDKEEFRLAQIC---------- 1271 (1666)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhhhccch--------------hHHHHHHHHHhchhhhhHHHhc----------
Confidence 22345666666677777777666655322 3444444444444444333211
Q ss_pred CCCC-cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 400 TPGY-HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 400 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
|- -...+.-+-.+...|...|-+++-+..++.++.+-+. ..-.+..+|.+|.+ -++++-.++++-...
T Consensus 1272 --GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA--------HMgmfTELaiLYsk-ykp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1272 --GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA--------HMGMFTELAILYSK-YKPEKMMEHLKLFWS 1340 (1666)
T ss_pred --CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH--------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 11 0111233445667777888888888888877765332 12345556655543 345554444432221
Q ss_pred HH--HHHhCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 007930 479 VL--EQECGSCHLDTLGVYSNLAATYDALGRVEDAI 512 (584)
Q Consensus 479 ~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 512 (584)
.. .++.. -.+.+..|..+..+|.+-..|+.|.
T Consensus 1341 RvNipKviR--A~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1341 RVNIPKVIR--AAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred hcchHHHHH--HHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 10 00000 1122345566666666666666554
No 253
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=8.9e-05 Score=60.86 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
-+..-|..++...+|..|+..|.+++.+ +|..+..+.+.+.++.++.+++.+....++++++ .|
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~ 75 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DP 75 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------Ch
Confidence 3444566777788999999999999999 9999999999999999999999999999999999 89
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
+.+..++.+|........+++|+ ..|..+.+.
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI-~~Lqra~sl 107 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAI-KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHH-HHHHHHHHH
Confidence 99999999999999999999999 777776543
No 254
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.68 E-value=0.00083 Score=53.16 Aligned_cols=100 Identities=24% Similarity=0.277 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHHHHHHHhCCCCCchHH
Q 007930 424 YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR----------INEATELFEEARGVLEQECGSCHLDTLG 493 (584)
Q Consensus 424 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 493 (584)
|+.|.+.++..... +|..+..+++-|.++..+.+ +++|+.-|++|+.+ +|+...
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHH
Confidence 45556666655543 34456777887777776533 45566666666666 899999
Q ss_pred HHHHHHHHHHHcCC----hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 494 VYSNLAATYDALGR----VEDAIEILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 494 ~~~~la~~~~~~g~----~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
+++.+|.+|...+. ..+|..+|++|...+++.... +|.+......|
T Consensus 71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~-~P~ne~Y~ksL 120 (186)
T PF06552_consen 71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE-DPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHH
Confidence 99999999987653 345555555555555443321 56554433333
No 255
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.66 E-value=0.05 Score=54.24 Aligned_cols=282 Identities=15% Similarity=0.071 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 007930 174 LDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQA-----MQFDEAENLCKKILEIHREHGHSASLEEAADRRLM 248 (584)
Q Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 248 (584)
...|..+++.+.+. ....+...+|.+|..- .+.+.|+.+++.+.......... ....+.+.+
T Consensus 228 ~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~---~~~~a~~~l 294 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK---GLPPAQYGL 294 (552)
T ss_pred hhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh---cCCccccHH
Confidence 45677777776655 3456666777776544 68999999999998721111000 011247788
Q ss_pred HHHHHHhc-----cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 249 ALVYEAKA-----DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC---RFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 249 ~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
|.+|.... ++..|+.++.++... ....+.+.+|.++..-. ++..|.++|..|...
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------- 357 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------- 357 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---------
Confidence 88888753 678899999887542 34456678888888655 567899999888764
Q ss_pred ccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Q 007930 321 LSVASIFIRLADLYYR----IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL-NEHEEALKLLQKAMK 395 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 395 (584)
....+...++.+|.. .-+...|..++.++.+.. + ..+...++.++... +.++.+.-.+....+
T Consensus 358 -G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--------~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 358 -GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--------N---PSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred -CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--------C---hhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 456677888888864 347889999999998763 1 22333344433322 666666655554443
Q ss_pred HHHhCCCCcccHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh----CCHH
Q 007930 396 LLEDTPGYHSTIAGIEAQMGVMLYVV----GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL----YRIN 467 (584)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 467 (584)
..-+... ..+..+.......... .+...+...+.++... ....+...+|.+|..- .+++
T Consensus 426 ~g~~~~q---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 426 LGYEVAQ---SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred hhhhHHh---hHHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCCCCCChH
Confidence 3222100 0011111111111111 1344455555554431 1246777888888754 4699
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc-C--ChHHHHHHHHHHHHH
Q 007930 468 EATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL-G--RVEDAIEILEYILKV 521 (584)
Q Consensus 468 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~a~~~ 521 (584)
.|...|.++... . +...+++|.++..- | ....|..+|.++.+.
T Consensus 493 ~a~~~y~~a~~~--------~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 493 KAAAQYARASEQ--------G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHh--------h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 999999999876 3 78899999998752 1 267888888888774
No 256
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.66 E-value=4.6e-05 Score=42.35 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+|++++++ +|++..++++||.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 37889998 9999999999999999999999986
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.021 Score=46.06 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=40.2
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 492 (584)
.++..+...|++++|+..++.++..-. +......+-.+++.+...+|++++|+..+..... +....
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~w~~ 159 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ESWAA 159 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------ccHHH
Confidence 344444445555555555544443111 1112233334445555555555554444433221 11222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
......|.++...|+.++|+..|+++++.
T Consensus 160 ~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 160 IVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33334455555555555555555555443
No 258
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.62 E-value=0.0027 Score=53.68 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=81.2
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC-----CCCchHHHHHH
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE-----SKSAFFGIVLN 454 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 454 (584)
...+++|++.|.-|+-...-....+...+.++..+|++|...|+.+....++++|++.+..... ........+++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3467889999998888776665566678899999999999999988888888888887765421 11223467888
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 455 QMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.+|.+..+.|++++|..+|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999885
No 259
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0036 Score=54.58 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=94.2
Q ss_pred CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 007930 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLE 481 (584)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 481 (584)
+.+...+..+..-|.-|++..+|..|+..|.+.+.. ..+ ++...+..|.+.+-+....|+|..|+.-..+++.+
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~--D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-- 148 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCA--DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-- 148 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCC--CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 344456777778899999999999999999999874 222 34456889999999999999999999999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
.|....+++.=|.|+..+.++.+|..+.+..+.+.
T Consensus 149 ------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999998887764
No 260
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.62 E-value=0.062 Score=50.68 Aligned_cols=50 Identities=14% Similarity=0.047 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHhh------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 448 FFGIVLNQMGLACLQL------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
..+.++..+|...... +..+++...|.++.++ +|....+++.+|..+...
T Consensus 250 ~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 250 LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence 3466777778777777 8899999999999998 788888899888877654
No 261
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.61 E-value=0.095 Score=52.57 Aligned_cols=230 Identities=20% Similarity=0.123 Sum_probs=138.1
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 007930 212 QAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNI 291 (584)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 291 (584)
..+++.+|.....+.++..|+.. .+...-|.+..++|+.++|..+++.. .. ........+..+-.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~--------~a~vLkaLsl~r~gk~~ea~~~Le~~-~~-----~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL--------YAKVLKALSLFRLGKGDEALKLLEAL-YG-----LKGTDDLTLQFLQNV 86 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHhcCchhHHHHHhhh-cc-----CCCCchHHHHHHHHH
Confidence 56788999998888888765443 23556778889999999999666532 21 222345567778899
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q 007930 292 YMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLT 371 (584)
Q Consensus 292 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 371 (584)
|..+|++++|..+|++++.. .|. -..+..+-.+|.+.+.|.+-.+.--+..+.. +..+ ...|.
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~-----pk~~---yyfWs 149 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNF-----PKRA---YYFWS 149 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----Cccc---chHHH
Confidence 99999999999999999887 566 6667777778888887766443333333332 2222 22344
Q ss_pred HHHHHHHHhcCHHHHHH-----HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 372 EISAIYEALNEHEEALK-----LLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 372 ~la~~~~~~g~~~~A~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
.+..+.......++... +-++..+..-...|.-...+.+. ..-.++..+|++++|.+.+..-+. ... .
T Consensus 150 V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~l----~ 222 (932)
T KOG2053|consen 150 VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EKL----T 222 (932)
T ss_pred HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hhc----c
Confidence 44444444444333332 12222222222223222223332 234566788999999998854332 111 1
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.............+...+++.+-.+...+.+..
T Consensus 223 ~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 223 SANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 112233334456667778888877777777765
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.61 E-value=0.0035 Score=51.37 Aligned_cols=111 Identities=13% Similarity=0.044 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
...+..++..+|..|...|++++|++.|.++.+.... .-....++..+..+....+++.....++.++.......
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 4567789999999999999999999999998775432 23446678888999999999999999999998888887
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV 311 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (584)
++..........-|..+...++|.+|...|-.+...
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 776666666777788888899999999998887654
No 263
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.60 E-value=0.0044 Score=58.28 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 494 (584)
|..+...|+...|+.++..|+.... ...-..+.+++.+....|-.-.|-.++.+++.+ ....+-.
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p-------~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--------~~sepl~ 678 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAP-------LQQDVPLVNLANLLIHYGLHLDATKLLLQALAI--------NSSEPLT 678 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccCh-------hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--------cccCchH
Confidence 4445668999999999999987522 222345778999999999999999999999998 4445567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
++.+|+.|..+.+.+.|++.|++|++. +|++..+...|-.+-+
T Consensus 679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~--------~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 679 FLSLGNAYLALKNISGALEAFRQALKL--------TTKCPECENSLKLIRC 721 (886)
T ss_pred HHhcchhHHHHhhhHHHHHHHHHHHhc--------CCCChhhHHHHHHHHH
Confidence 889999999999999999999999997 6666666665555544
No 264
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.60 E-value=0.0011 Score=52.57 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV---EDAIEILEYILKVREEKLGTANPDIDDEKERLAE 542 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~ 542 (584)
++.|.+.++..... +|..++.+.+.|.++..+.++ .++.+++++++.-+++.+.- +|+..++++.+|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHH
Confidence 56677777777776 888899999999988776444 23444444444444333322 7999999999999
Q ss_pred HHHHhch-----------HHHHHHHHHHHHHhhhhhhh
Q 007930 543 LLKETGR-----------ARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 543 ~~~~~g~-----------~~~A~~~~l~~~~~~~~~~~ 569 (584)
+|..++. +++|. .+++.+.+.+|+..
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~-~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKAT-EYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH-TT-H
T ss_pred HHHHHHhhcCChHHHHHHHHHHH-HHHHHHHhcCCCcH
Confidence 9998875 44555 67777777777643
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.58 E-value=0.00024 Score=39.80 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+.+++++|.+|..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 368999999999999999999999999998
No 266
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.58 E-value=8.7e-05 Score=41.24 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 007930 472 LFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAI 512 (584)
Q Consensus 472 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 512 (584)
+|++++++ +|+...++++||.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 37889998 9999999999999999999999986
No 267
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.57 E-value=0.072 Score=50.15 Aligned_cols=413 Identities=14% Similarity=0.054 Sum_probs=205.6
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 007930 65 LDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV 144 (584)
Q Consensus 65 ~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 144 (584)
..+|..+..+..+.+.+..+ . +++..+.|++.+..+ |....++.......+...+|+.-..+|.+++.-
T Consensus 14 e~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~F---------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVF---------PSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 47888899999998887666 6 899999999988753 334556666677778889999999999998865
Q ss_pred HHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---------HHHhCC
Q 007930 145 VDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEA---------HIQAMQ 215 (584)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---------~~~~g~ 215 (584)
.-. ..++ -..+..+....|+...+....-++.+......| -++....+|...+.. +..+.+
T Consensus 83 vLn--------lDLW-~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee~QR 152 (656)
T KOG1914|consen 83 VLN--------LDLW-KLYLSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEENQR 152 (656)
T ss_pred Hhh--------HhHH-HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHHHHH
Confidence 321 1101 122344445566666666666666666555444 223333333333322 222234
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 007930 216 FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL 295 (584)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 295 (584)
.+.....|++++..- ..++-.++..-..|++.+....-- + .+--..
T Consensus 153 I~~vRriYqral~tP--------------m~nlEkLW~DY~~fE~~IN~~tar-K-------------------~i~e~s 198 (656)
T KOG1914|consen 153 ITAVRRIYQRALVTP--------------MHNLEKLWKDYEAFEQEINIITAR-K-------------------FIGERS 198 (656)
T ss_pred HHHHHHHHHHHhcCc--------------cccHHHHHHHHHHHHHHHHHHHHH-H-------------------HHHhhC
Confidence 445555666665321 223333333333333333222100 0 011112
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCC----cc------cHHHHHHHHHHHHHHc------ccH--HHHHHHHHHHHHHHhcC
Q 007930 296 CRFDEAIFSYQKGLTVFKATRGED----HL------SVASIFIRLADLYYRI------GKL--RESKSYCENALRVCAKP 357 (584)
Q Consensus 296 g~~~~A~~~~~~al~~~~~~~~~~----~~------~~~~~~~~la~~~~~~------g~~--~~A~~~~~~al~~~~~~ 357 (584)
..|..|...+++...+.+...-.+ .+ .....|.++...-... |.. ..-.-.+++++....-.
T Consensus 199 ~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~ 278 (656)
T KOG1914|consen 199 PEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH 278 (656)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 223333333333333222111000 00 0011111111111000 000 01112234444332110
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc---cHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHE-------EALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG---RYGEA 427 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~-------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A 427 (584)
..-..+....+...+.++...|+.. ++..+|++++...... ....++.++..-...- +++..
T Consensus 279 --peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~------~~~Ly~~~a~~eE~~~~~n~~~~~ 350 (656)
T KOG1914|consen 279 --PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE------NKLLYFALADYEESRYDDNKEKKV 350 (656)
T ss_pred --HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHhcccchhhhh
Confidence 0001122334444556666666644 5555555555443221 1222333333222222 25555
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHHHcC
Q 007930 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA-TYDALG 506 (584)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g 506 (584)
..++++.+.+... ....++..+-..-.+..-.+.|...|.+|-+. +..+. .++..-|. -|..++
T Consensus 351 ~~~~~~ll~~~~~-------~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~------~r~~h--hVfVa~A~mEy~csk 415 (656)
T KOG1914|consen 351 HEIYNKLLKIEDI-------DLTLVYCQYMNFIRRAEGLKAARKIFKKARED------KRTRH--HVFVAAALMEYYCSK 415 (656)
T ss_pred HHHHHHHHhhhcc-------CCceehhHHHHHHHHhhhHHHHHHHHHHHhhc------cCCcc--hhhHHHHHHHHHhcC
Confidence 5666666654322 12344555555555556677788888877764 11121 22222222 245678
Q ss_pred ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 507 RVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 507 ~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
+.+-|...|+-.+.. +++...........+..+++-..+. ..++.++..
T Consensus 416 D~~~AfrIFeLGLkk--------f~d~p~yv~~YldfL~~lNdd~N~R-~LFEr~l~s 464 (656)
T KOG1914|consen 416 DKETAFRIFELGLKK--------FGDSPEYVLKYLDFLSHLNDDNNAR-ALFERVLTS 464 (656)
T ss_pred ChhHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHhCcchhHH-HHHHHHHhc
Confidence 889999999888876 4555555555667778888888888 777777765
No 268
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.12 Score=52.61 Aligned_cols=217 Identities=18% Similarity=0.140 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
....|..+|.+..+.|...+|++.|-++ ++| ..|..........|.|++-+.++.-+-+..++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika----------dDp----s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E--- 1165 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA----------DDP----SNYLEVIDVASRTGKYEDLVKYLLMARKKVRE--- 1165 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc----------CCc----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC---
Confidence 3467789999999999999999998874 233 23777888889999999999988777655322
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMI 273 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 273 (584)
|. +-..|..+|.+.++..+-.+... +++. + -....|.-++..|.|+.|.-.|...
T Consensus 1166 ---~~---id~eLi~AyAkt~rl~elE~fi~----------gpN~---A-~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1166 ---PY---IDSELIFAYAKTNRLTELEEFIA----------GPNV---A-NIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred ---cc---chHHHHHHHHHhchHHHHHHHhc----------CCCc---h-hHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 11 11233445556666555433321 1111 1 1345666666777777666555432
Q ss_pred HcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--HHH---------------hhcCCcccHHHHHHHHHHHHHH
Q 007930 274 ANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV--FKA---------------TRGEDHLSVASIFIRLADLYYR 336 (584)
Q Consensus 274 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~---------------~~~~~~~~~~~~~~~la~~~~~ 336 (584)
.-+..++..+..+|+|..|....++|-.. +++ +.|-+-...+.-+-.+...|..
T Consensus 1221 ---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1221 ---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHh
Confidence 22345666666677777776666655322 111 1222222334455667788888
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 007930 337 IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQ 391 (584)
Q Consensus 337 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 391 (584)
.|-|++-+..++.++-+-+. ....+..||.+|.+- ++++-.++++
T Consensus 1292 rGyFeElIsl~Ea~LGLERA---------HMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLERA---------HMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred cCcHHHHHHHHHhhhchhHH---------HHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 99999999988888776433 234566677666543 4444444443
No 269
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.51 E-value=0.012 Score=46.96 Aligned_cols=108 Identities=20% Similarity=0.166 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchh-------------hhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007930 118 LHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA-------------LAKFSGYMQLGDTCSSMGLLDRSVWCYESG 184 (584)
Q Consensus 118 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 184 (584)
+...|......|+.+.++..+++++.+.....-++.+ ...+.+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3344555566777788888888888776432221111 112245677888899999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 185 LEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
+.. +|..-.++..+..++...|+..+|+..|++......+.
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999999999999998887754
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.035 Score=44.80 Aligned_cols=138 Identities=19% Similarity=0.134 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCChH---HHHHHHHHHHHHHHHH-----------hCCC--ChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 162 MQLGDTCSSMGLLD---RSVWCYESGLEIQIEA-----------LGDS--DPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 162 ~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~-----------~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
...|+-|+...+.+ +|-..|+++++....- ...+ ...-..+...++..+...+++++|+..++.
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34455565554444 6666777766654211 0001 111223455678889999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHH
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSY 305 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (584)
++.... +....+.+-..++.+...+|.+++|+..+... .++...+......|.++...|+-++|...|
T Consensus 115 ~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~~~w~~~~~elrGDill~kg~k~~Ar~ay 182 (207)
T COG2976 115 ALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTI-------KEESWAAIVAELRGDILLAKGDKQEARAAY 182 (207)
T ss_pred HHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------ccccHHHHHHHHhhhHHHHcCchHHHHHHH
Confidence 885433 22334556788999999999999999888743 234455666678999999999999999999
Q ss_pred HHHHHH
Q 007930 306 QKGLTV 311 (584)
Q Consensus 306 ~~al~~ 311 (584)
+++++.
T Consensus 183 ~kAl~~ 188 (207)
T COG2976 183 EKALES 188 (207)
T ss_pred HHHHHc
Confidence 999987
No 271
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.47 E-value=0.15 Score=51.25 Aligned_cols=192 Identities=16% Similarity=0.106 Sum_probs=117.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHH
Q 007930 80 ETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFS 159 (584)
Q Consensus 80 ~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (584)
.....++ +.+|+....+.++. +|+...+...-|..+.++|++++|..+++.. ... ...+. .
T Consensus 18 d~ld~~q-fkkal~~~~kllkk---------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~----~~~D~----~ 78 (932)
T KOG2053|consen 18 DLLDSSQ-FKKALAKLGKLLKK---------HPNALYAKVLKALSLFRLGKGDEALKLLEAL-YGL----KGTDD----L 78 (932)
T ss_pred HHhhhHH-HHHHHHHHHHHHHH---------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-ccC----CCCch----H
Confidence 3456677 88888888887774 4555556667788999999999999665543 221 12222 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL 239 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (584)
++..+-.+|..++++++|..+|++++.. .|. -+.+..+-.+|.+.+.|.+-.+.--+..+..|+...
T Consensus 79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y---- 145 (932)
T KOG2053|consen 79 TLQFLQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY---- 145 (932)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc----
Confidence 4777889999999999999999999988 566 677777888888888887655544333333333221
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHH-HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007930 240 EEAADRRLMALVYEAKADYESALE-----HLVLASMVM-IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQK 307 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~~~A~~-----~~~~a~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (584)
..|..+..+.......+.... +-++..+.. ...|.-...+++. ..-.++..+|++++|.+.+..
T Consensus 146 ---yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 146 ---YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred ---hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHH
Confidence 124444444444444443333 112221111 1122222222222 223456678999999998844
No 272
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.11 Score=49.11 Aligned_cols=271 Identities=10% Similarity=0.005 Sum_probs=152.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH
Q 007930 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA 200 (584)
Q Consensus 121 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (584)
....+...++.+. +...+++........+... ..+.-+..+...|+.+.|+..++.+++... ..-..
T Consensus 237 ~~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~ga~-----wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~ 303 (546)
T KOG3783|consen 237 FISFVLGTPNPDG--EECEKALKKYRKRYPKGAL-----WLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKS 303 (546)
T ss_pred HHHHHcCCCCccH--HHHHHHhHHHHHhCCCCcc-----HHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHH
Confidence 3344444555544 3444444444333322222 145567777788888889999988887322 23445
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHH
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA--------KADYESALEHLVLASMVM 272 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~--------~g~~~~A~~~~~~a~~~~ 272 (584)
-+++.+|.++..+.+|..|-..+....+...- ..+..-+..|.++.. .|+-+.|..+++......
T Consensus 304 l~~fE~aw~~v~~~~~~~aad~~~~L~desdW-------S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~ 376 (546)
T KOG3783|consen 304 LMVFERAWLSVGQHQYSRAADSFDLLRDESDW-------SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELL 376 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh-------hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHH
Confidence 67889999999999999999998887766432 222222233333322 234455544444444333
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH--HHHHHHHHHHHc--ccHHHHHHHHH
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS--IFIRLADLYYRI--GKLRESKSYCE 348 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~--g~~~~A~~~~~ 348 (584)
...+.....-. -..+++-+. ..... -.+.... .+..++.++..- ...++..
T Consensus 377 ~~a~K~~P~E~-------------------f~~RKverf-~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~---- 431 (546)
T KOG3783|consen 377 ANAGKNLPLEK-------------------FIVRKVERF-VKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE---- 431 (546)
T ss_pred HhccccCchhH-------------------HHHHHHHHH-hcccc-ccccccccchHHHHHHHHhhcccCChhhHH----
Confidence 33221111100 011111111 11100 0000111 123333332211 1122222
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc-HHHH
Q 007930 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGR-YGEA 427 (584)
Q Consensus 349 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 427 (584)
+......... -++..+..--+..+|.++...|+...|..+|...++.......+......+++.+|.++..+|. ..++
T Consensus 432 k~~~~~~~~~-~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~ 510 (546)
T KOG3783|consen 432 KMRAELENPK-IDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEA 510 (546)
T ss_pred HHHHHHhccC-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHH
Confidence 2222222211 2244556667788999999999999999999998876555545667778899999999999999 9999
Q ss_pred HHHHHHHHHH
Q 007930 428 RSSFESAVVK 437 (584)
Q Consensus 428 ~~~~~~a~~~ 437 (584)
..++.+|-+.
T Consensus 511 ~~~L~kAr~~ 520 (546)
T KOG3783|consen 511 RALLLKAREY 520 (546)
T ss_pred HHHHHHHHhh
Confidence 9999998874
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.44 E-value=0.00052 Score=38.38 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
+.+++++|.++..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999998
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.43 E-value=0.00037 Score=39.04 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+.+++.+|.++..+|++++|+++|++++++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999998
No 275
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.43 E-value=0.047 Score=54.42 Aligned_cols=282 Identities=16% Similarity=0.128 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 007930 216 FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAK-----ADYESALEHLVLASMVMIANGQENEVAAIDVSIGN 290 (584)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 290 (584)
...|..+++.+-+... ......+|.+|..- .+.+.|+.++..+...+..... .....+.+.+|.
T Consensus 228 ~~~a~~~~~~~a~~g~----------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~-~~~~~a~~~lg~ 296 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT-KGLPPAQYGLGR 296 (552)
T ss_pred hhHHHHHHHHHHhhcc----------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh-hcCCccccHHHH
Confidence 4566777766654322 23366677776654 6899999999988762111111 112335678899
Q ss_pred HHHHcC-----ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 291 IYMSLC-----RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG---KLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 291 ~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
+|.... ++..|..+|.++.+. ....+.+.+|.++..-. +...|.++|..|....
T Consensus 297 ~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-------- 358 (552)
T KOG1550|consen 297 LYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-------- 358 (552)
T ss_pred HHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--------
Confidence 998743 667788888888765 44567788888887655 5789999999987653
Q ss_pred hHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Q 007930 363 PEEIANGLTEISAIYEAL----NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV-GRYGEARSSFESAVVK 437 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 437 (584)
...+.+.++.+|..- -+...|..++.++.+... ..+...++.++... +++..+...+......
T Consensus 359 ---~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~---------~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 359 ---HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN---------PSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred ---ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC---------hhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 246778888887653 478899999999877641 11222344443322 6666666555544443
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc----CChH
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQL----YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL----GRVE 509 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~ 509 (584)
-.+ .....+..+.......... .+...+...+.++... ....+...||.+|..- .+++
T Consensus 427 g~~----~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 427 GYE----VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred hhh----HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCCCCCChH
Confidence 211 1111111111111111111 2445556666555443 4456788899988765 4589
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh-c--hHHHHHHHHHHHHHhh
Q 007930 510 DAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET-G--RARNRKGKSLENLLDS 564 (584)
Q Consensus 510 ~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~l~~~~~~ 564 (584)
.|...|.++... + ....+++|.++..- | +...|+ .++..+...
T Consensus 493 ~a~~~y~~a~~~---------~--~~~~~nlg~~~e~g~g~~~~~~a~-~~~~~~~~~ 538 (552)
T KOG1550|consen 493 KAAAQYARASEQ---------G--AQALFNLGYMHEHGEGIKVLHLAK-RYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHh---------h--hHHHhhhhhHHhcCcCcchhHHHH-HHHHHHHhc
Confidence 999999999874 3 78899999988742 1 245666 555555443
No 276
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.37 E-value=0.0062 Score=43.93 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=68.2
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 007930 210 HIQAMQFDEAENLCKKILEIHREHGHSA-SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSI 288 (584)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 288 (584)
....|+|.+|.+.+.+.++......... ......++..+|.++...|++++|+..+++++.+.++.++......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4578999999999999999887776432 124455688899999999999999999999999999999988887777766
Q ss_pred HHHH
Q 007930 289 GNIY 292 (584)
Q Consensus 289 a~~~ 292 (584)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6553
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.34 E-value=0.00063 Score=38.53 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Q 007930 117 SLHMLAAIYCSLGRFEEAVPVLERSIEVVDI 147 (584)
Q Consensus 117 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 147 (584)
++..||.+|...|+|++|+++|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999998877643
No 278
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.27 E-value=0.0083 Score=43.26 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=61.7
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 007930 252 YEAKADYESALEHLVLASMVMIANGQEN---EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFI 328 (584)
Q Consensus 252 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 328 (584)
....|+|.+|++.+.+............ ....+..++|.++...|++++|+..+++++++.++.. |......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 4567999999999999988877666655 5677788999999999999999999999999998865 3333444444
Q ss_pred HHHH
Q 007930 329 RLAD 332 (584)
Q Consensus 329 ~la~ 332 (584)
.+..
T Consensus 86 ~~~~ 89 (94)
T PF12862_consen 86 WLAN 89 (94)
T ss_pred HHHH
Confidence 4433
No 279
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.25 E-value=0.16 Score=46.88 Aligned_cols=138 Identities=11% Similarity=-0.002 Sum_probs=82.6
Q ss_pred CcccHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHH--HHHHHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGR-YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATE--LFEEARGV 479 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~~ 479 (584)
+...++..+..-|.-+.+.|. -++|+..++.++... +.+ ..+.+ ..... -...|.+|+. .+-+.+.+
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-------~yD-~ec~n-~v~~f-vKq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-------NYD-IECEN-IVFLF-VKQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-------ccc-HHHHH-HHHHH-HHHHHHHHHhhhhHHHHHHH
Confidence 344556666677888888887 788888888888752 111 11111 11111 1122333332 22233332
Q ss_pred HHHHhC----CCCCchHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHH
Q 007930 480 LEQECG----SCHLDTLGVYSNLA--ATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 480 ~~~~~~----~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (584)
..-+.. +-.....+....|+ ..++..|++.++.-+-.-..++ .| ...++..+|.++....+|++|
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHHH
Confidence 211111 12223334444444 4567899999999888888887 77 678999999999999999999
Q ss_pred HHHHHHH
Q 007930 554 KGKSLEN 560 (584)
Q Consensus 554 ~~~~l~~ 560 (584)
. .++..
T Consensus 515 ~-~~l~~ 520 (549)
T PF07079_consen 515 W-EYLQK 520 (549)
T ss_pred H-HHHHh
Confidence 9 55544
No 280
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.24 E-value=0.011 Score=52.97 Aligned_cols=136 Identities=12% Similarity=0.098 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS-LCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
+|..+.....+.+..+.|...|.+|.. .......+|...|.+-+. .++.+.|..+|+.+++. .+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f~~ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------FPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------HTT
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCC
Confidence 356666777777889999999998853 344456678888888666 56666699999999988 456
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
....+......+...|+.+.|..+|++++..... ......+|......-...|+.+......+++.+..+.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~------~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPK------EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC------HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6677777778889999999999999999876422 1214567777888888899999999999988887665
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.24 E-value=0.0011 Score=37.54 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
++..||.+|...|++++|+++|++++.+.....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 478899999999999999999999997766543
No 282
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.23 E-value=0.0011 Score=37.06 Aligned_cols=29 Identities=34% Similarity=0.329 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.+++.+|.++...|++++|+++|++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999998
No 283
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.18 E-value=0.02 Score=51.38 Aligned_cols=136 Identities=12% Similarity=0.020 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ-LYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
+|..+.....+.+..+.|..+|.+|.. .......+|...|.+... .++.+.|...|+.+++. .
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--------f 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--------F 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------C
Confidence 455667777888889999999999974 222334678888888666 56666699999999998 5
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+.....+......+...|+.+.|..+|++++... . ........+......-...|+.+... +..+...+.-++
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l----~-~~~~~~~iw~~~i~fE~~~Gdl~~v~-~v~~R~~~~~~~ 139 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL----P-KEKQSKKIWKKFIEFESKYGDLESVR-KVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS----S-CHHHCHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----C-chhHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhhh
Confidence 6666778888889999999999999999998751 1 11113467778888888889887776 555555544444
No 284
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.031 Score=48.46 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH
Q 007930 371 TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450 (584)
Q Consensus 371 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 450 (584)
..-+.-....|++.+|...+..++...++. ..+...++.+|...|+.+.|...+...=.-.. ....
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~~ 203 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKAA 203 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhHH
Confidence 344556678899999999999999988776 45666899999999999999888765322110 0001
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
..+...-.++.+.....+... +++.+.. +|+...+.+.+|..+...|+.++|.+.+-..+.. -.+..+
T Consensus 204 ~~l~a~i~ll~qaa~~~~~~~-l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~~d 271 (304)
T COG3118 204 HGLQAQIELLEQAAATPEIQD-LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGFED 271 (304)
T ss_pred HHHHHHHHHHHHHhcCCCHHH-HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cccccC
Confidence 111111122333333332222 2222332 7888899999999999999999999887666554 223222
Q ss_pred hhHHHHHHHHHHHHHHhchHHHH
Q 007930 531 PDIDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~A 553 (584)
..+...|-.++...|.-+.+
T Consensus 272 ---~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 272 ---GEARKTLLELFEAFGPADPL 291 (304)
T ss_pred ---cHHHHHHHHHHHhcCCCCHH
Confidence 23444555555555544443
No 285
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.03 E-value=0.33 Score=46.99 Aligned_cols=183 Identities=14% Similarity=0.075 Sum_probs=100.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHH------HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc
Q 007930 205 YLAEAHIQAMQFDEAENLCKKI------LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278 (584)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 278 (584)
.+|.++...|+|.+|.++|.+. ++++.+.. .+..+.-+...|.-++-....++-.........+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlR----------MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP 706 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLR----------MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP 706 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHH----------HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence 4678888899999999988653 33333222 4455566666666666555555544433333322
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHH------HHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSY------QKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALR 352 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 352 (584)
. .-|.++...|+.++|+... +-++++.+++ +......+..++..+.....+.-|-+.|.+.-+
T Consensus 707 k-------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD 775 (1081)
T KOG1538|consen 707 K-------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD 775 (1081)
T ss_pred H-------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhcc
Confidence 2 2345666778888877653 2334443332 223334444455555555555555555544322
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHH
Q 007930 353 VCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFE 432 (584)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (584)
. ..+..++...+++++|....++--+.. ..++.-.|..+....++++|.+.|.
T Consensus 776 ~-----------------ksiVqlHve~~~W~eAFalAe~hPe~~----------~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 776 L-----------------KSLVQLHVETQRWDEAFALAEKHPEFK----------DDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred H-----------------HHHhhheeecccchHhHhhhhhCcccc----------ccccchHHHHhhhhhhHHHHHHHHH
Confidence 2 123345566677777765544322222 2234455666677777777776666
Q ss_pred HHH
Q 007930 433 SAV 435 (584)
Q Consensus 433 ~a~ 435 (584)
+|-
T Consensus 829 kAG 831 (1081)
T KOG1538|consen 829 KAG 831 (1081)
T ss_pred Hhc
Confidence 543
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.97 E-value=0.0017 Score=36.25 Aligned_cols=29 Identities=38% Similarity=0.645 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++..+|.+|..+|++++|..+|++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57899999999999999999999999998
No 287
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.90 E-value=0.21 Score=48.26 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=102.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHH-----HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAI-----DVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
..++.++...|++.+|.+.|.+. +......+. .+..+.-+...|..++-....++-.+-..... .
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~-------G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k---e 705 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRS-------GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK---E 705 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHc-------CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC---C
Confidence 35677777788888887777642 111111111 13344445555555544444444333322221 2
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHH------HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYC------ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
|. .-|.++...|+.++|+... +-++++..+.. ....+.+..++..+.....+.-|.+.|.+.-
T Consensus 706 Pk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld-----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 706 PK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD-----KAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred cH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc-----hhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 22 1356677778888877643 33444444321 1122344445555555555555555554432
Q ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 395 KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
.. ..+..++...+++.+|....++ .+.....+++..|+.+....++++|.+.|.
T Consensus 775 D~---------------ksiVqlHve~~~W~eAFalAe~-----------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 775 DL---------------KSLVQLHVETQRWDEAFALAEK-----------HPEFKDDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred cH---------------HHHhhheeecccchHhHhhhhh-----------CccccccccchHHHHhhhhhhHHHHHHHHH
Confidence 21 1345667778888888776654 334445677777888888888888888886
Q ss_pred HHHH
Q 007930 475 EARG 478 (584)
Q Consensus 475 ~a~~ 478 (584)
+|-+
T Consensus 829 kAGr 832 (1081)
T KOG1538|consen 829 KAGR 832 (1081)
T ss_pred Hhcc
Confidence 6543
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.87 E-value=0.0033 Score=35.03 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.++..+|.+|...|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999999876
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.52 Score=46.15 Aligned_cols=66 Identities=14% Similarity=0.016 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchh---hhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRA---LAKFSGYMQLGDTCSSMGLLDRSVWCYESG 184 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 184 (584)
...+..++......-.++-|...|-+.-... |.... .....--...+.+-..-|+|++|...|-.+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~----Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYA----GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhcccc----chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 3455577887777777777777776542211 00000 000001123445555567888887776443
No 290
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.86 E-value=0.29 Score=43.04 Aligned_cols=92 Identities=16% Similarity=0.044 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 007930 215 QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS 294 (584)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 294 (584)
.-...++++.++++.+..... ......+...+|..|...|++++|+.+|+.+...++..+=......++..+..|+..
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~ 230 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR 230 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 445668888888888887763 455566788999999999999999999999988888777777888888999999999
Q ss_pred cCChhHHHHHHHHH
Q 007930 295 LCRFDEAIFSYQKG 308 (584)
Q Consensus 295 ~g~~~~A~~~~~~a 308 (584)
.|+.+..+.+.-+.
T Consensus 231 ~~~~~~~l~~~leL 244 (247)
T PF11817_consen 231 LGDVEDYLTTSLEL 244 (247)
T ss_pred hCCHHHHHHHHHHH
Confidence 99998877765543
No 291
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.13 Score=44.68 Aligned_cols=136 Identities=18% Similarity=0.088 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
....+..+......|+ +.+|...+..++.. .++...+...++.+|...|+.+.|...+...-...
T Consensus 134 ~e~~~~~~~~~~~~e~-~~~a~~~~~~al~~---------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----- 198 (304)
T COG3118 134 EEEALAEAKELIEAED-FGEAAPLLKQALQA---------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA----- 198 (304)
T ss_pred HHHHHHHhhhhhhccc-hhhHHHHHHHHHHh---------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-----
Confidence 3445667778888999 99999999999986 33346677789999999999999998887632111
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
.......+.... ..+.......+... +++.+.. +|+...+-+.+|..+...|+.++|.+.+-..++..
T Consensus 199 ~~~~~~~l~a~i---~ll~qaa~~~~~~~-l~~~~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 199 QDKAAHGLQAQI---ELLEQAAATPEIQD-LQRRLAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred hhhHHHHHHHHH---HHHHHHhcCCCHHH-HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 011100001111 22222222222222 1222222 68888999999999999999999999887777665
Q ss_pred HHh
Q 007930 231 REH 233 (584)
Q Consensus 231 ~~~ 233 (584)
...
T Consensus 267 ~~~ 269 (304)
T COG3118 267 RGF 269 (304)
T ss_pred ccc
Confidence 443
No 292
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.79 E-value=0.024 Score=37.89 Aligned_cols=73 Identities=11% Similarity=0.123 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
+...++.|.-++...+ .++|+..+.++++... ..++...++-.+..+|...|+|.+.+.+..+-+++.....+
T Consensus 6 ak~~ie~GlkLY~~~~-~~~Al~~W~~aL~k~~------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNE-TQQALQKWRKALEKIT------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHHHHHHhccch-HHHHHHHHHHHHhhcC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4456677888888888 8999999999998733 45678888999999999999999999998888877765443
No 293
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.48 Score=43.57 Aligned_cols=198 Identities=15% Similarity=0.033 Sum_probs=142.7
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 193 GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
|-+-....+..+..+.++....++..|...+.+.+-.+.... .......++..++.++...+.--.+..+.-.++...
T Consensus 266 g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~--~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 266 GGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGC--NEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred cchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 333345567777889999999999999999998876655444 445667778888888888888888888877777777
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc-----HHHHHHHHHHHHHHcccHHHHHHHH
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS-----VASIFIRLADLYYRIGKLRESKSYC 347 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~ 347 (584)
.+...+...+..-..++..+...|..+.|...+..++....-.++-+... .+.++..-+..+ ...+.+.+.+++
T Consensus 344 sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L 422 (482)
T KOG4322|consen 344 SEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYL 422 (482)
T ss_pred HHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHH
Confidence 77777777777778899999999999999999999998765544432111 111111111112 556788888888
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHH
Q 007930 348 ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEE---ALKLLQKAMKL 396 (584)
Q Consensus 348 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~ 396 (584)
+++-....+ -+-+..+.++.+.++..|-..|+.++ +...|+++...
T Consensus 423 ~~A~~~f~k---L~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~ 471 (482)
T KOG4322|consen 423 DLAQSIFYK---LGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRY 471 (482)
T ss_pred HHHHHHHHH---ccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHh
Confidence 888888876 34556678888899999999998654 44455555443
No 294
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.69 E-value=0.0037 Score=57.63 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=97.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCch
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDT 491 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 491 (584)
-+-+.-.+..++++.|+..|.+++++ .+..+..+.+.+.++...+++..|+.-+.+|++. .|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 35567778889999999999999995 5556777888889999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
..+|+.-|.+....+++.+|...|+....+ .|+...+...+.++-...
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDECNKIV 119 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 788777777777665443
No 295
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.66 E-value=0.0025 Score=58.69 Aligned_cols=100 Identities=12% Similarity=0.068 Sum_probs=88.1
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhH
Q 007930 454 NQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDI 533 (584)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~ 533 (584)
-.-+.-.+.-+.++.|+..|.+|+++ +|+.+..+.+.+.++.+.+++..|+.-+.+++++ +|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34455667778999999999999999 8988888899999999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 534 DDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
..++++-|.....++++.+|. ..++......|+...
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~-~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKAL-LDLEKVKKLAPNDPD 107 (476)
T ss_pred hheeeeccHHHHhHHHHHHHH-HHHHHhhhcCcCcHH
Confidence 999999999999999999999 777777666665443
No 296
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.61 E-value=0.27 Score=46.97 Aligned_cols=98 Identities=15% Similarity=-0.016 Sum_probs=78.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 007930 457 GLACLQLYRINEATELFEEARGVLEQECGSCHLD-TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDD 535 (584)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~ 535 (584)
|..+...|+...|+.++..|+.. .|. ....+.+||.+....|-..+|-.++.+++.+ ....+-
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~--------~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--------~~sepl 677 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNL--------APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI--------NSSEPL 677 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhcc--------ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--------cccCch
Confidence 44445679999999999999887 222 2235678999999999999999999999998 333456
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 536 EKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
..+.+|+.+..+.+.+.|+ ..++.+++..++.+.-
T Consensus 678 ~~~~~g~~~l~l~~i~~a~-~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGAL-EAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHhcchhHHHHhhhHHHH-HHHHHHHhcCCCChhh
Confidence 6888999999999999999 8889898877765443
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.51 E-value=0.0048 Score=34.06 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
++++.+|.++...|++++|...|+++++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36889999999999999999999999987
No 298
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.49 E-value=0.0014 Score=57.38 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=85.4
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 007930 460 CLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKER 539 (584)
Q Consensus 460 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~ 539 (584)
.+..|.+++|++.|..++++ +|..+..+...+.++.+++++..|+..+..++.+ +|+.+.-+-.
T Consensus 124 Aln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ykf 187 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYKF 187 (377)
T ss_pred HhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccch
Confidence 34568899999999999999 9999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 540 LAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 540 l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
-+.....+|+|.+|. .+|..+...+-+.....
T Consensus 188 rg~A~rllg~~e~aa-~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAA-HDLALACKLDYDEANSA 219 (377)
T ss_pred hhHHHHHhhchHHHH-HHHHHHHhccccHHHHH
Confidence 999999999999999 88888887655544443
No 299
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.41 E-value=0.35 Score=38.33 Aligned_cols=147 Identities=12% Similarity=0.111 Sum_probs=98.8
Q ss_pred HHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHH
Q 007930 332 DLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIE 411 (584)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 411 (584)
.-|+..+.-.++-..|..++++. ..+..++|+..|.... ...++..+.+ ..
T Consensus 47 y~yw~~s~as~sgd~flaAL~lA------------------------~~~k~d~Alaaf~~le---ktg~g~YpvL--A~ 97 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALKLA------------------------QENKTDDALAAFTDLE---KTGYGSYPVL--AR 97 (221)
T ss_pred eehhcccccccchHHHHHHHHHH------------------------HcCCchHHHHHHHHHH---hcCCCcchHH--HH
Confidence 34555555566666666666554 3355677777665432 2333444533 44
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchH--HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFF--GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
...+.+....|+...|+.+|.++-.-. ..|.. -.+...-+.++...|-|+.-.. ..+.+.++.+|
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n~ 164 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCCh
Confidence 578999999999999999999876521 11111 2334445666777787766443 34444566788
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
....+...||..-.+.|++.+|..+|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888999999999999999999999998876
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.30 E-value=0.011 Score=32.47 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 535 DEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
++++.+|.++...|++++|. ..++.+++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~-~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAI-EYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHH-HHHHHHHHHCcCC
Confidence 46889999999999999999 9999999887753
No 301
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.24 E-value=0.39 Score=44.78 Aligned_cols=158 Identities=16% Similarity=0.044 Sum_probs=114.4
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcC--------------------CCchhHHHHHHHHHHHH
Q 007930 65 LDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSG--------------------SGQELELVMSLHMLAAI 124 (584)
Q Consensus 65 ~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~~~~l~~~ 124 (584)
..+|-.++.+++++.++..+|+ .+.|.++.++|+-.+++... ...+.....+++.....
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd-~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGD-HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4688899999999999999999 99999999999987774321 11234456777788888
Q ss_pred HHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 007930 125 YCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCR 204 (584)
Q Consensus 125 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (584)
..+.|-+..|.++.+-.+.+.+ ..+|.. +++.+-....+.++|+--+.+++.......+ ..........+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp----~~DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~---~~~~~lPn~a~ 182 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDP----DEDPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYR---NWLSLLPNFAF 182 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCC----CCCcch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh---hhhhhCccHHH
Confidence 8999999999999999888753 224432 3566666667778888777777765542100 00001234556
Q ss_pred HHHHHHHHhCCH---------------HHHHHHHHHHHHHHHHh
Q 007930 205 YLAEAHIQAMQF---------------DEAENLCKKILEIHREH 233 (584)
Q Consensus 205 ~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~ 233 (584)
..+.++...++- ++|...+.+|+...|..
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 677788888887 89999999999988754
No 302
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.24 E-value=1 Score=41.94 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=87.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHH--HHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNE-HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARS--SFESAVV 436 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~ 436 (584)
..+....+.-+..-|.-++..|. -++|+..++.+++..+... .+. +... .+-...|.+|+. .+.+.+.
T Consensus 372 DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~-------ec~-n~v~-~fvKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 372 DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDI-------ECE-NIVF-LFVKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccH-------HHH-HHHH-HHHHHHHHHHHhhhhHHHHHH
Confidence 44556677778888888999987 7889999988887654331 111 1111 111112333322 2223333
Q ss_pred H---HHHcCCCC-CchHHHHHHHH--HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 437 K---LRASGESK-SAFFGIVLNQM--GLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 437 ~---~~~~~~~~-~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
+ ..+.|-.. ........+.+ |..++.+|+|.++.-+-.=..++ .| ...++..+|.+.....+|++
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHH
Confidence 2 22222211 11122334444 45567899999999888877777 77 56899999999999999999
Q ss_pred HHHHHHH
Q 007930 511 AIEILEY 517 (584)
Q Consensus 511 A~~~~~~ 517 (584)
|..++..
T Consensus 514 A~~~l~~ 520 (549)
T PF07079_consen 514 AWEYLQK 520 (549)
T ss_pred HHHHHHh
Confidence 9998875
No 303
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.22 E-value=0.016 Score=32.79 Aligned_cols=36 Identities=33% Similarity=0.300 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
+++..||.+-...++|++|+.-|++++++.++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 578899999999999999999999999998887654
No 304
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.10 E-value=1.1 Score=40.94 Aligned_cols=179 Identities=17% Similarity=0.093 Sum_probs=118.3
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 294 SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR----IGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
..+++..+...+.++-.. ........++.+|.. ..+..+|..+|..+.+. .....
T Consensus 53 ~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-----------g~~~a 111 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-----------GLAEA 111 (292)
T ss_pred ccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-----------ccHHH
Confidence 455666677666665542 112556666776654 34578888888854433 23457
Q ss_pred HHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHH
Q 007930 370 LTEISAIYEA----LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG-------RYGEARSSFESAVVKL 438 (584)
Q Consensus 370 ~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~a~~~~ 438 (584)
.+.+|.+|.. ..+..+|..+|+++...-.. .. ......++.+|..-. +...|...|.++....
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~-----~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~ 185 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV-----EA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG 185 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh-----hH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc
Confidence 7789998887 44899999999998775322 11 233556777776542 2336777887777642
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC--------
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG-------- 506 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------- 506 (584)
...+...+|.+|.. ..++.+|..+|+++.+. .. ....+.++ ++...|
T Consensus 186 ----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 186 ----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred ----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 35678888988865 34899999999999986 22 67888888 666666
Q ss_pred -------ChHHHHHHHHHHHH
Q 007930 507 -------RVEDAIEILEYILK 520 (584)
Q Consensus 507 -------~~~~A~~~~~~a~~ 520 (584)
+...|..++..+..
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred cccccCCCHHHHHHHHHHHHH
Confidence 55555555555544
No 305
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=1.2 Score=40.85 Aligned_cols=141 Identities=18% Similarity=0.134 Sum_probs=97.9
Q ss_pred HHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 007930 125 YCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCR 204 (584)
Q Consensus 125 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (584)
+....++.+|...-+..+.-........-......+|+.+..+|...|+...-...+...+... .++.+....+...+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN 213 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLIN 213 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHH
Confidence 3346889999888777665432222222223344678888888988898776666665555443 33445556667777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 205 YLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
.|-..|...+.|+.|.....++. +|... .+...++.++.+|.+..-+++|..|.+++.+|+..
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~--~pe~~--snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSV--YPEAA--SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhccc--Ccccc--ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 78888999999999888776653 22222 33467788899999999999999999999988774
No 306
>PRK14707 hypothetical protein; Provisional
Probab=96.01 E-value=3.7 Score=46.36 Aligned_cols=426 Identities=10% Similarity=0.011 Sum_probs=220.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
.++.++-...++.+...+-.-+..+............. ..-..++.++...+++.++..+-..+..+...+.. ++..
T Consensus 794 ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~a-f~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~--e~~L 870 (2710)
T PRK14707 794 EMTNALNALSKWPDTPACAAAASALAARVADDPRLREA-FDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLAD--EPEL 870 (2710)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHh-cCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc--Chhh
Confidence 34444445555555555444444444333211111111 12346777788888888777777777666655532 2332
Q ss_pred HHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 200 AET--CRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 200 ~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
... -..++.++.-.++|.+...+-.-+..+............+..-..++.++....++.++-.+-.-+..+......
T Consensus 871 R~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~ 950 (2710)
T PRK14707 871 RHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSD 950 (2710)
T ss_pred hhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc
Confidence 222 234566677777777766666666666555542222222333445667777777776654444444444444444
Q ss_pred cchHHHHH--HHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 278 ENEVAAID--VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 278 ~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
++.....+ ..+++++..++++.+.-.+-.-+..+...+..+........-..+++++....++.++-.+-.-+..+..
T Consensus 951 d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~ 1030 (2710)
T PRK14707 951 DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAA 1030 (2710)
T ss_pred ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 44443332 4577788888888887776666666655443111111222233456666666666554444444444443
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS-TIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
... .+........-..++.++....+|.+.-.+-.-+..+......+.. ..+..-..++.++...-++.+.-.+-+.+
T Consensus 1031 rLa-~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa 1109 (2710)
T PRK14707 1031 RLS-NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAA 1109 (2710)
T ss_pred Hhc-cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHH
Confidence 321 1100011122234566666666665544443333333332211110 01112235677777777888877888888
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
+.+...++....+........++.+.-...++.....+=.-+..+..++.....-..+..-..++..+..+.++.+.-.+
T Consensus 1110 ~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac 1189 (2710)
T PRK14707 1110 SALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALSKCLARPVC 1189 (2710)
T ss_pred HHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhhcCcCcHHH
Confidence 88887776554444344444555555555555443333333333333333211111122234567777777777777777
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
-+-++.+........+|-..-....|+.+.....+
T Consensus 1190 ~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~sR 1224 (2710)
T PRK14707 1190 RSAFVLLAERAGSAELPWRQFEMRGIAVVANAMSR 1224 (2710)
T ss_pred HHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHHH
Confidence 77777777776666666554444444444443333
No 307
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.97 E-value=0.0043 Score=54.43 Aligned_cols=91 Identities=21% Similarity=0.152 Sum_probs=82.3
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGV 494 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 494 (584)
+.-.+..|.+++|++.|..++.+ ++..+..+...+.++..+++...|+.-+..++++ +++.+..
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ 184 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG 184 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence 33445678899999999999985 5667889999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+-..+.....+|++++|..+++.++++
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 999999999999999999999999987
No 308
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.91 E-value=0.13 Score=34.54 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (584)
...-|.-++...+.++|+..++++++... +.++...++..+..+|...|+|.+++.+..+-+++..+..++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 44456667788999999999999998843 356778889999999999999999999998888887766543
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.90 E-value=0.077 Score=32.91 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAE 542 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~ 542 (584)
+.++.+|..+.++|+|++|..+.+.++++ .|++..+......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHHHHH
Confidence 46789999999999999999999999999 8888776654433
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.82 E-value=0.2 Score=39.49 Aligned_cols=103 Identities=18% Similarity=0.077 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
....+..+..+-...++.+++...+....-+ .|.....-..-|.++...|++.+|+..++.+.+-
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------- 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER------- 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-------
Confidence 4456666777777888999999888877766 8888899999999999999999999999997664
Q ss_pred CChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhh
Q 007930 529 ANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
.|..+.+.-.++.++..+|+.+ ...+-..+++..++..
T Consensus 74 -~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 74 -APGFPYAKALLALCLYALGDPS--WRRYADEVLESGADPD 111 (160)
T ss_pred -CCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhcCCChH
Confidence 6777777777888888888754 2233344554444333
No 311
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=2 Score=41.87 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
-.++.+-|.-.++..+|..+++.|...+.....- ..+...+.....++.||....+.+.|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 3456677888899999999999999988754322 123345788899999999999999999999999988
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
+|...-....+-.+....|.-++|+....+.......
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 6666667777777888889999999998888776544
No 312
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=1.2 Score=38.71 Aligned_cols=137 Identities=16% Similarity=0.079 Sum_probs=92.1
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH
Q 007930 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY 335 (584)
Q Consensus 256 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 335 (584)
..-++-++-+.+.++..+..+.......++.++|..|.+.++.+.+.+.+.+.++..-..+ -..+...+...+|.+|.
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~ 166 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYG 166 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhc
Confidence 3445556666666665555555667888999999999999999999999988877654432 13445556667777777
Q ss_pred HcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 336 RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 336 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
.+.-.++.++.....++. |.++...-..-...|...+...++.+|-.++...+..+...
T Consensus 167 d~~vV~e~lE~~~~~iEk------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 167 DRKVVEESLEVADDIIEK------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred cHHHHHHHHHHHHHHHHh------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 665556655555554443 44444444444455666777788899988888777665443
No 313
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.67 E-value=1.5 Score=40.92 Aligned_cols=151 Identities=16% Similarity=0.036 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC----C---------C---------CcccHHHHHHHHHHHHHHh
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT----P---------G---------YHSTIAGIEAQMGVMLYVV 421 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~---------~---------~~~~~~~~~~~l~~~~~~~ 421 (584)
|..+.++..++.++..+|+...|.+++++|+-..+.. . | .+.....+++.....+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 5567899999999999999999999999998665421 1 1 1223445666777888899
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 007930 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501 (584)
Q Consensus 422 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 501 (584)
|-+..|.++.+-.+.+ .+..+| .-++..+-....+.++++--+..++.......+. .....+...+.++.+
T Consensus 117 G~~rTAlE~~KlLlsL----dp~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSL----DPDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIALA 187 (360)
T ss_pred CcHHHHHHHHHHHHhc----CCCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHHH
Confidence 9999999999888775 222222 2345555556667788877777777655421100 000123466788888
Q ss_pred HHHcCCh---------------HHHHHHHHHHHHHHH
Q 007930 502 YDALGRV---------------EDAIEILEYILKVRE 523 (584)
Q Consensus 502 ~~~~g~~---------------~~A~~~~~~a~~~~~ 523 (584)
+...++. ++|...+.+|+..+.
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 8889888 899999999987643
No 314
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.65 E-value=2.3 Score=41.26 Aligned_cols=413 Identities=12% Similarity=-0.019 Sum_probs=216.5
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHH
Q 007930 82 ISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGY 161 (584)
Q Consensus 82 ~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 161 (584)
...++ ..+.+..++.+...+-. .-|..-..|...|..-.+.|..+.+.+.|++++.-.+. .... + .
T Consensus 52 i~~~~-~~~~~~~~r~~y~~fL~-----kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~-----Svdl--W-~ 117 (577)
T KOG1258|consen 52 IQEND-SIEDVDALREVYDIFLS-----KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPL-----SVDL--W-L 117 (577)
T ss_pred HhccC-chhHHHHHHHHHHHHHh-----hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhh-----HHHH--H-H
Confidence 44444 44555555555554331 13455666778888899999999999999999987631 1111 1 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 007930 162 MQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEE 241 (584)
Q Consensus 162 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (584)
..++.+-...|+.+.-...|++|.... |.+ -.....|...-..-..++++..-...|++.+++-......
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~v----G~d-F~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~----- 187 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYV----GLD-FLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR----- 187 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhc----ccc-hhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH-----
Confidence 222333335566666666677776653 222 1222334444444466778888888888887753222110
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC------CcchHHHHHH-HHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 007930 242 AADRRLMALVYEAKADYESALEHLVLASMVMIANG------QENEVAAIDV-SIGNIYMSLCRFDEAIFSYQKGLTVFKA 314 (584)
Q Consensus 242 a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~ 314 (584)
++..-.-+... +...-+-..++.+++..... ........+. .+-.+-...+.++++...+.+...+
T Consensus 188 ---~f~~f~~~l~~-~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~--- 260 (577)
T KOG1258|consen 188 ---HFDRFKQLLNQ-NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI--- 260 (577)
T ss_pred ---HHHHHHHHHhc-CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH---
Confidence 11000000000 00000111111111100000 0000000000 0000000111112222211111111
Q ss_pred hhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 315 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
.=.++...-...+.+..++..+...-... .+........|......-...|+++...-.|++++
T Consensus 261 ---------------~~~~~~~s~~~~~kr~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercl 324 (577)
T KOG1258|consen 261 ---------------HEKVYQKSEEEEEKRWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCL 324 (577)
T ss_pred ---------------HHHHHHhhHhHHHHHHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHH
Confidence 11223333344455555555554332221 11223335667777777888999999999999988
Q ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 395 KLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
--+... ...|...+......|+.+-|...+..+.++... ....+...-+......|++..|...++
T Consensus 325 i~cA~Y-------~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-------~~~~i~L~~a~f~e~~~n~~~A~~~lq 390 (577)
T KOG1258|consen 325 IPCALY-------DEFWIKYARWMESSGDVSLANNVLARACKIHVK-------KTPIIHLLEARFEESNGNFDDAKVILQ 390 (577)
T ss_pred hHHhhh-------HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-------CCcHHHHHHHHHHHhhccHHHHHHHHH
Confidence 766544 456667777778889999998888888877432 233455556677778899999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHh-chHHH
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD-IDDEKERLAELLKET-GRARN 552 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~~~~ 552 (584)
...+- .|....+-..-.....+.|+.+.+.. +....... .-|..++. ....+...+...... ++.+.
T Consensus 391 ~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~ 459 (577)
T KOG1258|consen 391 RIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADL 459 (577)
T ss_pred HHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHH
Confidence 98876 57777777777777888899888875 22222211 12222333 233444555554444 44455
Q ss_pred HHHHHHHHHHhhhhh
Q 007930 553 RKGKSLENLLDSNAY 567 (584)
Q Consensus 553 A~~~~l~~~~~~~~~ 567 (584)
|. ..+..+++..|.
T Consensus 460 a~-~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 460 AR-IILLEANDILPD 473 (577)
T ss_pred HH-HHHHHhhhcCCc
Confidence 55 666666554443
No 315
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=95.64 E-value=1.9 Score=41.48 Aligned_cols=177 Identities=15% Similarity=0.014 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCCh-------hHHHHHHHHHHHHHHHhh
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRF-------DEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~ 316 (584)
....+|..++..++|+-|...|+.+..-+.........+.++...|.+....+.. ++...+++.++..+....
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 4778999999999999999999988776654444555666777777777776644 477788888888877732
Q ss_pred cC---CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH--hcCCCCCChHHHHHHHHHHHHHH--HHhcCHHHHHHH
Q 007930 317 GE---DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC--AKPAPATAPEEIANGLTEISAIY--EALNEHEEALKL 389 (584)
Q Consensus 317 ~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~ 389 (584)
.+ .......+....+.++...|.+.+|...+-+..... ... ..-..+..+..+|.++ ....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l----~~~~~alllE~~a~~~~~~~~~-------- 357 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL----RPFGSALLLEQAAYCYASLRSN-------- 357 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh----hhHhhHHHHHHHHHhhcccccC--------
Confidence 11 123556677778888888999888877766665542 110 0001233444444444 1100
Q ss_pred HHHHHHHHHhCCC-C-cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 390 LQKAMKLLEDTPG-Y-HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 390 ~~~a~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
....+ . ....+.-+..-|.-|.+.|+...|..+|.+++..+..
T Consensus 358 --------~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 358 --------RPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred --------CCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 00000 0 1122333345577889999999999999999998764
No 316
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.64 E-value=0.39 Score=35.04 Aligned_cols=102 Identities=12% Similarity=-0.020 Sum_probs=64.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 456 MGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL----GRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
++.-++..|++-+|++..+..+... .++......+..-|.++..+ .+.+-=..++.-+++-+.+...- .|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 3567788999999999999998872 11222224556667776544 34443333444444433333222 78
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
..+..++.||.-+....-|+++..+.-+.+--
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88899999998887777888887555444433
No 317
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.61 E-value=1.5 Score=38.68 Aligned_cols=186 Identities=13% Similarity=0.059 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC---C-------HHHHHHHHHHHHHHHHhc--------------c
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA---S-------LEEAADRRLMALVYEAKA--------------D 257 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-------~~~a~~~~~l~~~~~~~g--------------~ 257 (584)
+.+.+..+++..|+..+|+..+++=+....+..+.. . ...+.-+..+|.+..... -
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~y 91 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFY 91 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchH
Confidence 345667889999999999999998888776654330 1 122333444555444332 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCcch----------------------HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 007930 258 YESALEHLVLASMVMIANGQENE----------------------VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKAT 315 (584)
Q Consensus 258 ~~~A~~~~~~a~~~~~~~~~~~~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 315 (584)
|..|-.+...-...+......|. ....+................++.+.+|++.++..
T Consensus 92 y~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~ 171 (247)
T PF11817_consen 92 YQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY 171 (247)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh
Confidence 23333333322222222211111 00000000000111223446688888888888765
Q ss_pred hcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 007930 316 RGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQK 392 (584)
Q Consensus 316 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 392 (584)
.. ......+...+|..|+..|++++|..+++.+...+++ ..-......++..+..++...|+.+..+.+.-+
T Consensus 172 ~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~---egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 172 GQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR---EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred cc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 42 3455667778999999999999999999999888766 223344567788888999999998887765544
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.60 E-value=0.97 Score=37.31 Aligned_cols=78 Identities=19% Similarity=0.170 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 465 RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 465 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
.-++|...|-++- +....+.++..+.||..|. ..+.++|+.++.+++++. .+++.-+++.+..|+.++
T Consensus 121 ~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~----~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 121 GDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS----NPDDNFNPEILKSLASIY 188 (203)
T ss_pred CcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHH
Confidence 3455555554432 3335567888999998776 668999999999999984 333355678899999999
Q ss_pred HHhchHHHHH
Q 007930 545 KETGRARNRK 554 (584)
Q Consensus 545 ~~~g~~~~A~ 554 (584)
..+|+++.|.
T Consensus 189 ~~~~~~e~AY 198 (203)
T PF11207_consen 189 QKLKNYEQAY 198 (203)
T ss_pred HHhcchhhhh
Confidence 9999999997
No 319
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.57 E-value=0.048 Score=30.91 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
.++..||.+-...++|++|+.-|++++++.++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999877654
No 320
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=1.4 Score=38.25 Aligned_cols=135 Identities=18% Similarity=0.180 Sum_probs=93.8
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007930 172 GLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALV 251 (584)
Q Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~ 251 (584)
..-++-++-+.+.++-.+...| .....+++.++|..|.+.++.+.+.+++.+.++..-..+ -..+...+-..+|.+
T Consensus 89 kkneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~ 164 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLI 164 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHh
Confidence 3445556666666655544322 346788999999999999999999999999988776665 334444455667777
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 007930 252 YEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313 (584)
Q Consensus 252 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 313 (584)
|..+.-.++.++. +-.++++.++....-..-...|...+...+|.+|-..+...+..+.
T Consensus 165 y~d~~vV~e~lE~---~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 165 YGDRKVVEESLEV---ADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hccHHHHHHHHHH---HHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 7665555554444 4456667777666555556667777788888888888888777653
No 321
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=1.5 Score=38.93 Aligned_cols=131 Identities=15% Similarity=0.062 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHH
Q 007930 262 LEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLR 341 (584)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 341 (584)
++-+++.++-..+.........++.+.|..|.+.|+-+.|++.+.+..+..-..+ ...+.......+|..|....-..
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~~lV~ 161 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDHDLVT 161 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccHHHHH
Confidence 3334444444444434567788999999999999999999999988776644433 23455566667777776544333
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 342 ESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 342 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
+..+++-.+.++ |.++...-..-..-|.......++.+|-.+|-.++..+...
T Consensus 162 ---~~iekak~liE~---GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 162 ---ESIEKAKSLIEE---GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred ---HHHHHHHHHHHh---CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 344444445444 44544444444455666677788999999888877665443
No 322
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.42 E-value=0.37 Score=35.17 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=61.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHHhhcCCcccH
Q 007930 248 MALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL----CRFDEAIFSYQKGLTVFKATRGEDHLSV 323 (584)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~ 323 (584)
.+.-++..|++-+|++..+..+. ..++.......+..-|.++..+ .+.+-=..++.-+++-+.+...- .|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~---~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLIS---RHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHH---HccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-ChhH
Confidence 35667889999999999997655 3344444446666777777644 34433334444444443332211 5666
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRV 353 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 353 (584)
+..++.+|.-+.....|+++..-.++++.+
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 777777777665555666666666666544
No 323
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.37 E-value=0.11 Score=36.86 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 470 TELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 470 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+..+++.++. +|+...+.+.+|..+...|++++|++.+-+++..
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456677776 8899999999999999999999999998887764
No 324
>PRK14707 hypothetical protein; Provisional
Probab=95.33 E-value=6.7 Score=44.54 Aligned_cols=429 Identities=11% Similarity=0.027 Sum_probs=213.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
.++++.-...++.+...+-.-+..+............. ..-..++.++-.+.++.+...+-.-+..+...+.. ++..
T Consensus 710 ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~l~~a-~~aQevANaLNALSKWPd~~~C~~AA~aLA~rLa~--~~~L 786 (2710)
T PRK14707 710 DVANALNALSKWPRTPVCAAVASALAARVVAEPRLRKA-FDAQQVATALNALSKWPDNQACAAAANTLAERQLR--EPDV 786 (2710)
T ss_pred HHHHHHhhhhcCCCcHHHHHHHHHHHHHHhcChhhhhh-cCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh--Ccch
Confidence 34444444555555444444444333322211111110 11234455555555555443333333333333211 1211
Q ss_pred HH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 200 AE--TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 200 ~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
.. --..++.++--..++.+...+-.-+..+............+..-..++.++...+++..+..+-.-+..+......
T Consensus 787 r~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~ 866 (2710)
T PRK14707 787 RDVLKPREMTNALNALSKWPDTPACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLAD 866 (2710)
T ss_pred hhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc
Confidence 11 1233455555555665555554444444443332111111222345667777777777666666555555555444
Q ss_pred cchHHHHH--HHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 278 ENEVAAID--VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 278 ~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
++.....+ ..++.++..++++.+...+-.-+..+...+..+........-..+++++-.+.++.++-.+-.-+..+..
T Consensus 867 e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~ 946 (2710)
T PRK14707 867 EPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAE 946 (2710)
T ss_pred ChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 44443332 4567778888888887777777777766654222222223334566666666666554444444444433
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS-TIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
... .+........-..++.++...++|.+.-.+-.-+..+......+.. .....-..++.++....+|.++-.+-+-+
T Consensus 947 rLa-~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA 1025 (2710)
T PRK14707 947 RLS-DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATV 1025 (2710)
T ss_pred Hhc-cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHH
Confidence 321 1100111222234566677777776655555544444433311110 00111235677777777877766666666
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
..+...+..+.......--..++.++-...++.+.-.+-.-+..+...+.....-.....-..++.++..+-++.+.-.+
T Consensus 1026 ~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~C 1105 (2710)
T PRK14707 1026 EALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVC 1105 (2710)
T ss_pred HHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHH
Confidence 66655543221111122233556666666777665555554554444433311111112234667777777888888888
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHH
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLAELLKETGRARN 552 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (584)
-..++.+...+....++-..-....++.++..+.+|-.
T Consensus 1106 r~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~ 1143 (2710)
T PRK14707 1106 AAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPG 1143 (2710)
T ss_pred HHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCC
Confidence 88888887777665566555555566666666665543
No 325
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=95.32 E-value=1.9 Score=38.18 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=112.9
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHH
Q 007930 254 AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADL 333 (584)
Q Consensus 254 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 333 (584)
..++|++|++.+.... ..+.+.|++..|.+...-.++.+.+.. .+.......++..+
T Consensus 2 ~~kky~eAidLL~~Ga--------------------~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l 58 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA--------------------LILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIEL 58 (260)
T ss_dssp HTT-HHHHHHHHHHHH--------------------HHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH--------------------HHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Confidence 3567777777665543 345555566666655555555554432 22222233455555
Q ss_pred HHHcccHH-HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHH
Q 007930 334 YYRIGKLR-ESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEA 412 (584)
Q Consensus 334 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 412 (584)
....+.-+ +-..+.+++++..+. +..+......+..+|..+.+.|++.+|..+|-.+-.-. ...+.
T Consensus 59 ~~~~~~~~p~r~~fi~~ai~WS~~---~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~----------~~~~~ 125 (260)
T PF04190_consen 59 ISLFPPEEPERKKFIKAAIKWSKF---GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPS----------AFAYV 125 (260)
T ss_dssp HHHS-TT-TTHHHHHHHHHHHHHT---SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHH----------HHHHH
T ss_pred HHhCCCCcchHHHHHHHHHHHHcc---CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChh----------HHHHH
Confidence 55443322 355566777776622 33444556788889999999998888877764321110 01110
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC-------
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG------- 485 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------- 485 (584)
.+-..+...|...+. .........-|...++...|...+....+...+...
T Consensus 126 ~ll~~~~~~~~~~e~----------------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~ 183 (260)
T PF04190_consen 126 MLLEEWSTKGYPSEA----------------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDI 183 (260)
T ss_dssp HHHHHHHHHTSS--H----------------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEE
T ss_pred HHHHHHHHhcCCcch----------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhcccc
Confidence 111112222222222 122222233455678999998888777766433200
Q ss_pred ---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 486 ---SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 486 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
+..|. ......|-.+. ..+ +...|....+.++..+.. +|.....+..+|.+|+....
T Consensus 184 ~~~~~~Pl-lnF~~lLl~t~-e~~----~~~~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 184 EYPPSYPL-LNFLQLLLLTC-ERD----NLPLFKKLCEKYKPSLKR-DPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp EEESS-HH-HHHHHHHHHHH-HHT-----HHHHHHHHHHTHH---H-HHHTHHHHHHHHHHHH---S
T ss_pred CCCCCCch-HHHHHHHHHHH-hcC----cHHHHHHHHHHhCccccc-cHHHHHHHHHHHHHHCCCCC
Confidence 11121 12222222222 223 345677766666665543 67888899999999998653
No 326
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.15 E-value=2.5 Score=38.55 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=113.0
Q ss_pred HHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhCCCCcccHHHH
Q 007930 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL----NEHEEALKLLQKAMKLLEDTPGYHSTIAGI 410 (584)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 410 (584)
...+++..+...+.++-... .......++.+|... .+..+|..+|+.+.+. + ....
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~-----------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-----g----~~~a 111 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG-----------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-----G----LAEA 111 (292)
T ss_pred cccccHHHHHHHHHHhhhcC-----------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-----c----cHHH
Confidence 34567778888877776521 125666677777653 3578888888844322 1 1345
Q ss_pred HHHHHHHHHH----hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC-------CHHHHHHHHHHHHHH
Q 007930 411 EAQMGVMLYV----VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY-------RINEATELFEEARGV 479 (584)
Q Consensus 411 ~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~a~~~ 479 (584)
.+.+|.+|.. ..+..+|..+|+++... .+..-..+...+|..|..-. +...|...|.++-..
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 6678988887 45899999999999884 11111344777887777642 233677777777765
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
....+...+|.+|.. ..++++|..+|.++.+. -+ ..+.+.++ ++...|
T Consensus 185 ----------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~---------g~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 185 ----------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ---------GD-GAACYNLG-LMYLNG 236 (292)
T ss_pred ----------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---------CC-HHHHHHHH-HHHhcC
Confidence 255788999988865 34889999999999985 22 67788888 666555
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.15 E-value=1.2 Score=36.83 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=59.0
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 007930 253 EAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLAD 332 (584)
Q Consensus 253 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 332 (584)
+.+-.-++|...|-++ .....-..+...+.+|..|. ..+.++++.++.+++++... +....+.++..|+.
T Consensus 117 Wsr~~d~~A~~~fL~~-----E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas 186 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQL-----EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLAS 186 (203)
T ss_pred hhccCcHHHHHHHHHH-----cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHH
Confidence 3343445666665543 12223355777888888777 67889999999999998533 33566889999999
Q ss_pred HHHHcccHHHHH
Q 007930 333 LYYRIGKLRESK 344 (584)
Q Consensus 333 ~~~~~g~~~~A~ 344 (584)
++..+|+++.|-
T Consensus 187 ~~~~~~~~e~AY 198 (203)
T PF11207_consen 187 IYQKLKNYEQAY 198 (203)
T ss_pred HHHHhcchhhhh
Confidence 999999999885
No 328
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.91 E-value=3.8 Score=39.43 Aligned_cols=178 Identities=14% Similarity=0.077 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHH
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADY-------ESALEHLVLASMVMI 273 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~-------~~A~~~~~~a~~~~~ 273 (584)
.....||+.++..++|+-|...|+.+.+-+.... .....+.+....|.+....+.. +....+++.|...+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 4567799999999999999999999887665433 2334455566666666666533 366677777777666
Q ss_pred Hc-----CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc---HHHHHHHHHHHH--HHcccHHHH
Q 007930 274 AN-----GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS---VASIFIRLADLY--YRIGKLRES 343 (584)
Q Consensus 274 ~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~A 343 (584)
.. ........+....+.++...|.+.+|...+-+.....-. +... .+..+..+|.++ ........
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~- 361 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSP- 361 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCc-
Confidence 52 222355566677778888889988888777666554210 1122 445555555555 11000000
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 344 KSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 344 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
.+......+.-+..-|.-|...|+...|..+|.+++..+...
T Consensus 362 ---------------~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~ 403 (414)
T PF12739_consen 362 ---------------GLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK 403 (414)
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 000112334444555788999999999999999999988643
No 329
>PRK10941 hypothetical protein; Provisional
Probab=94.90 E-value=0.23 Score=43.81 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 492 LGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 492 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
...+.+|-.+|.+.++++.|+.+.+..+.+ .|+.+.-+...|.+|.++|.+..|. ..++..++..|+.+..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~-~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVAL-SDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCCCchhH
Confidence 356678888999999999999999999998 8888888999999999999999999 9999999999988888
Q ss_pred HHHhH
Q 007930 572 EVTKR 576 (584)
Q Consensus 572 ~~~~~ 576 (584)
+.++.
T Consensus 252 ~~ik~ 256 (269)
T PRK10941 252 EMIRA 256 (269)
T ss_pred HHHHH
Confidence 75543
No 330
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=2.9 Score=37.24 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007930 175 DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA 254 (584)
Q Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~ 254 (584)
++-++-+++.++-.++..| .....+++...|..|.+.|+-+.|.+.+.+..+..-..+ ...+.......+|..|.
T Consensus 81 eeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~- 155 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYL- 155 (393)
T ss_pred HHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhc-
Confidence 3445556666666555444 346788999999999999999999999999887766655 34445555566666665
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 007930 255 KADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313 (584)
Q Consensus 255 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 313 (584)
+.+-.-+.+++|-.++++.++....-..-..-|...+...+|.+|-..|-.++..+.
T Consensus 156 --D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 156 --DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred --cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 444555556667677788888776666666677777888889999988888877653
No 331
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.74 E-value=2.6 Score=36.68 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhCCCCCH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHI-QAMQFDEAENLCKKILEIHREHGHSASL 239 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (584)
+..++.+....|+|++++.+.++++... .....+-...+..+|- ..|....+...+..........+. .
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~---~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN---E 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch---h
Confidence 5678899999999999999999998872 1122233333444442 223334444444333333222211 0
Q ss_pred HHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH-----cCCcchHHHHHHHHHHHHHHc-----C-----ChhHHHH
Q 007930 240 EEAADRRLMALVYEAKADY-ESALEHLVLASMVMIA-----NGQENEVAAIDVSIGNIYMSL-----C-----RFDEAIF 303 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~ 303 (584)
. . ...+-...... ++-...+...+.++.. ..+....+..+-..|..|... | -.++|..
T Consensus 74 ~----~--~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 74 K----Q--VKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp H----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred H----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 0 0 11111111111 1112223333333322 112222333333455555422 1 2368999
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHh
Q 007930 304 SYQKGLTVFKATRGEDHLSVASIFIRLADLYY-RIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 304 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 355 (584)
.|++|+++.....++.+|.......+.+..|+ ..|+.++|+...++++....
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999998777778888888787877765 48999999999888877653
No 332
>PRK10941 hypothetical protein; Provisional
Probab=94.65 E-value=0.65 Score=41.01 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
....+.++-.+|...++++.|+.+.+..+.+ .|+.+.-+...|.+|.++|.+..|...++..++.
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4567778888999999999999999999999 8888888899999999999999999999999987
No 333
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.62 E-value=0.38 Score=29.86 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSN 497 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 497 (584)
..++.+|..+.+.|+|++|..+.+.++++ .|+...+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHH
Confidence 46788999999999999999999999999 7776555443
No 334
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=3.9 Score=37.65 Aligned_cols=143 Identities=13% Similarity=0.034 Sum_probs=98.1
Q ss_pred HcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHH
Q 007930 83 SSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYM 162 (584)
Q Consensus 83 ~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 162 (584)
.+.+ +.+|..+-+..+.-..-.....-+.-.+.+|+.+..+|-..|+...-...+..-+....-..+. .......+
T Consensus 138 d~K~-~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~---e~qavLiN 213 (493)
T KOG2581|consen 138 DQKE-YKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDE---EGQAVLIN 213 (493)
T ss_pred hhHH-HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcc---hhHHHHHH
Confidence 3455 8888888777665422211122234457788888999999999877777777666655322112 22223466
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 163 QLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 163 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
.+-..|...+.|+.|.....+..--. ...+...+..++.+|.+..-+++|..|.+++-+++...|..
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 77788888999999887766553110 11134678889999999999999999999999999988763
No 335
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.42 E-value=3.1 Score=36.20 Aligned_cols=185 Identities=17% Similarity=0.163 Sum_probs=106.5
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYE-ALNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
+..+|.+....|+|++.+.++++++..... ....-.+.++.+|. ..|....+...+.......... +...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e--------Lt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~-~~~~ 74 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE--------LTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK-GNEK 74 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC--------CCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc-chhH
Confidence 467889999999999999999999988322 12233334444442 2344444555544433333222 1111
Q ss_pred cHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHHHhh-----C-----CHHHHHH
Q 007930 406 TIAGIEAQMGVMLYVVGR-YGEARSSFESAVVKLRASGE---SKSAFFGIVLNQMGLACLQL-----Y-----RINEATE 471 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~-----g-----~~~~A~~ 471 (584)
. ...+-....+ -++=...+..++.+....-. .........+...|..|.-. | -.++|..
T Consensus 75 ~-------~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 75 Q-------VKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 1 1111111111 12233445555555544211 11122222333345554422 2 2478999
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 472 LFEEARGVLEQECGSCHLDTLGVYSNLAATY-DALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 472 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
.|++|+++......+.+|-......+.+..| ..+|+.++|....+++++-....++
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 9999999999988888998888888887766 4589999999999999887655443
No 336
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=5.6 Score=39.08 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..+.+.|...++..+ |..++++|...+..+..-. .+...+.....++.||..+.+.+.|.+++++|-+.. +
T Consensus 355 ~iLWn~A~~~F~~~~-Y~~s~~~y~~Sl~~i~~D~---~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-----~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEK-YVVSIRFYKLSLKDIISDN---YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-----R 425 (872)
T ss_pred HHHHHhhHHHHHHHH-HHHHHHHHHHHHHhccchh---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-----c
Confidence 356778888889888 9999999999998765432 344567888899999999999999999999998764 3
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQ 188 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 188 (584)
..+.. ...+-.+....|.-++|+..........
T Consensus 426 ~~~l~----q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 426 QSPLC----QLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred ccHHH----HHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 33332 3344556667788899998887776654
No 337
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.36 E-value=1 Score=35.69 Aligned_cols=87 Identities=17% Similarity=0.030 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
+...+..+..+-...++.+++...+....-+ .|.....-..-|.++...|++.+|+..++...+-
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------- 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER------- 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-------
Confidence 3455566677777888888888777655443 3445677778899999999999999999997665
Q ss_pred CCCchHHHHHHHHHHHHHcCChH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVE 509 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~ 509 (584)
.+..+.+--.++.|+..+|+..
T Consensus 74 -~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 -APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -CCCChHHHHHHHHHHHHcCChH
Confidence 6777777888999999998863
No 338
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.30 E-value=2.3 Score=39.09 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.++..+|..|...|+++.|++.|-++-+.+.. .......+.++-.+-...|+|.....+..++............
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence 56889999999999999999999998777544 4667888889999999999999888888887665211100000
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLA 268 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a 268 (584)
...+.+...-|.+....++|..|..+|-.+
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 001123334455555666777777776543
No 339
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.27 E-value=0.88 Score=41.77 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=74.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC---Cc---h----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 456 MGLACLQLYRINEATELFEEARGVLEQECGSCH---LD---T----LGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~---~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
=|..++++++|..|..-|..+++++.+...... +. . ..+...|..||.++++.+-|+....+.+.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l---- 257 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL---- 257 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----
Confidence 355677888899999999999988876543222 11 1 124567899999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKG 555 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (584)
+|.+..-+..-|.+...+.+|.+|..
T Consensus 258 ----nP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 258 ----NPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred ----CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999973
No 340
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.25 E-value=0.12 Score=42.89 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=50.9
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 459 ACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 459 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.....++.+.|.+.|.+++++ -|+....|+.+|....+.|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345678999999999999999 8899999999999999999999999999999998
No 341
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.14 E-value=4.5 Score=37.34 Aligned_cols=125 Identities=14% Similarity=0.054 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 007930 424 YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYD 503 (584)
Q Consensus 424 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 503 (584)
.+.-+.+|++|++. ++.....+..+-.......+.++..+-+++++.. +|.....|...-....
T Consensus 47 ~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--------~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 47 AERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--------NPGSPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCChHHHHHHHHHHH
Confidence 34556777888774 2233444555555556667888888888888887 6665555544333322
Q ss_pred ---HcCChHHHHHHHHHHHHHHHHHhCCC----------ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 504 ---ALGRVEDAIEILEYILKVREEKLGTA----------NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 504 ---~~g~~~~A~~~~~~a~~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
..-.+......|.+++.......... .........++.....+.|-.+.|. ..++.+++.+
T Consensus 111 ~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Av-a~~Qa~lE~n 184 (321)
T PF08424_consen 111 SNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAV-ALWQALLEFN 184 (321)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHH-HHHHHHHHHH
Confidence 23467899999999998877765533 2345567788889999999999999 7888877654
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.12 E-value=0.07 Score=28.80 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++..+|.++..+|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999886
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.09 E-value=1.1 Score=43.15 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=83.2
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 007930 210 HIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289 (584)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 289 (584)
....++++++....... ++.|..+ ......++..+...|..+.|+.....- ...-
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~-------~~~~~~i~~fL~~~G~~e~AL~~~~D~-----------------~~rF 325 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIP-------KDQGQSIARFLEKKGYPELALQFVTDP-----------------DHRF 325 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-H-----------------HHHH
T ss_pred HHHcCChhhhhhhhhhh-hhcccCC-------hhHHHHHHHHHHHCCCHHHHHhhcCCh-----------------HHHh
Confidence 34567777766655311 1111111 112556777788888888888765421 1122
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
.+..+.|+++.|.+..++ ......|..||.....+|+++-|.++|+++-+.
T Consensus 326 eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~---------------- 376 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF---------------- 376 (443)
T ss_dssp HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------------
T ss_pred HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------------
Confidence 345677888877765433 334558889999999999999999998876433
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
..|..+|...|+.+.-.++...+ ... ++. +..-.+++..|+.++.+..+.++
T Consensus 377 -~~L~lLy~~~g~~~~L~kl~~~a----~~~-~~~-------n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 377 -SGLLLLYSSTGDREKLSKLAKIA----EER-GDI-------NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHCT-HHHHHHHHHHH----HHT-T-H-------HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -cccHHHHHHhCCHHHHHHHHHHH----HHc-cCH-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556677777764433333332 222 110 11223445566666666555543
No 344
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.07 E-value=0.17 Score=44.00 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=62.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007930 457 GLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536 (584)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~ 536 (584)
+.-....|+.++|..+|+.|+.+ .|...+++..+|......++.-+|-.+|-+|+.+ +|.+.++
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nseA 186 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSEA 186 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchHH
Confidence 33445679999999999999999 8888899999999999999999999999999998 7888888
Q ss_pred HHHHHHHH
Q 007930 537 KERLAELL 544 (584)
Q Consensus 537 ~~~l~~~~ 544 (584)
+.+-++..
T Consensus 187 LvnR~RT~ 194 (472)
T KOG3824|consen 187 LVNRARTT 194 (472)
T ss_pred Hhhhhccc
Confidence 77665543
No 345
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.90 E-value=1.5 Score=40.30 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=77.0
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
.....-.++..+|..|...|+++.|++.|-++.+.+.. .......+.++-.+-...|+|..-..+..++......
T Consensus 145 iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 145 IKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence 34455678889999999999999999999998887655 3456777788888888899998888888777665210
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
. ..............-|.+....++|..|..++-.+.
T Consensus 220 ~-~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 N-ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred h-hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 000001112344445555666678888888876543
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.82 E-value=0.94 Score=39.43 Aligned_cols=79 Identities=27% Similarity=0.207 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
..+...+..|...|.+.+|+++.++++.+ +|-....+..|-.++..+|+--.|.+.|++.-...+.-+|-+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 45556678888999999999999999999 8888899999999999999999999999999999988888655
Q ss_pred hhHHHHH
Q 007930 531 PDIDDEK 537 (584)
Q Consensus 531 p~~~~~~ 537 (584)
.+..+-+
T Consensus 352 ddsieew 358 (361)
T COG3947 352 DDSIEEW 358 (361)
T ss_pred chhHHHH
Confidence 5444433
No 347
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.79 E-value=2.3 Score=37.56 Aligned_cols=75 Identities=23% Similarity=0.213 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
...++..++..+...|+++.++..+++.+.. +|..-..+..+-..|...|+...|+..|++.-....+-+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4578888999999999999999999999998 88888999999999999999999999999999987777775
Q ss_pred CCh
Q 007930 529 ANP 531 (584)
Q Consensus 529 ~~p 531 (584)
+.+
T Consensus 224 ~P~ 226 (280)
T COG3629 224 DPA 226 (280)
T ss_pred Ccc
Confidence 433
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.78 E-value=0.15 Score=27.43 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.++..+|.++...|++++|+..+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999999886
No 349
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=93.77 E-value=6.6 Score=43.80 Aligned_cols=192 Identities=10% Similarity=0.040 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHH---HHHHHHHH------
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIF---SYQKGLTV------ 311 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~------ 311 (584)
.++....+|..+...|.+.+|+..|..|+..++..+|.-..+.++-.++.+..-.+....-.. ........
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~ 320 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSS 320 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCc
Confidence 456678899999999999999999999999999999999999998888877664433221110 00000000
Q ss_pred H--HHhh--cCCcccHH----------HHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 007930 312 F--KATR--GEDHLSVA----------SIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIY 377 (584)
Q Consensus 312 ~--~~~~--~~~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 377 (584)
. .+.. ....|... .....+... -...+++++.+|.++.....+. ....-..++...++.++
T Consensus 321 ~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~--i~~~~~~~l~~Y~~~~~~~~~~---~p~lv~~E~~lr~~~~l 395 (1185)
T PF08626_consen 321 SSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNL--IPDLYEKALSLYSRSTNDTSEY---VPQLVYSEACLRFARFL 395 (1185)
T ss_pred cCcccCCccCCCCCCccccCCCccccchhhccCHhh--hhHHHHHHHHHHHHhhcccccc---CcchHHHHHHHHHHHHH
Confidence 0 0000 00001110 001111111 1234678888888887554331 11223456777778887
Q ss_pred HHhc--------------------CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 378 EALN--------------------EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 378 ~~~g--------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
.... .-.++.+++.+++....... ...+...++..+|.+|...|-..++.-+++.++..
T Consensus 396 ~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l-~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 396 VAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL-SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC-CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 7777 67788888888887654332 34455778889999999999888887777777765
Q ss_pred H
Q 007930 438 L 438 (584)
Q Consensus 438 ~ 438 (584)
+
T Consensus 475 ~ 475 (1185)
T PF08626_consen 475 L 475 (1185)
T ss_pred h
Confidence 4
No 350
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.75 E-value=5.6 Score=36.72 Aligned_cols=147 Identities=8% Similarity=0.004 Sum_probs=95.9
Q ss_pred CcchHHHHHHHHHHHHHHcCC------------hhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHH
Q 007930 277 QENEVAAIDVSIGNIYMSLCR------------FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESK 344 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 344 (584)
.+|....++..+....-..-. .+.-+.+|++|++. +|.....+..+-.+.....+.++..
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 466666666666555443322 23455566666665 5666666666666777777778888
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC-----------cccHHHHHHH
Q 007930 345 SYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY-----------HSTIAGIEAQ 413 (584)
Q Consensus 345 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~ 413 (584)
.-+++++..... .+.+...|...-......-.+......|.+++......... ......++..
T Consensus 86 ~~we~~l~~~~~------~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r 159 (321)
T PF08424_consen 86 KKWEELLFKNPG------SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR 159 (321)
T ss_pred HHHHHHHHHCCC------ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 888888876422 23333333333333333446788888999988877654332 2344566778
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Q 007930 414 MGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
+.....+.|..+.|+..++..+++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHH
Confidence 888899999999999999999886
No 351
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.63 E-value=1 Score=34.97 Aligned_cols=85 Identities=19% Similarity=0.067 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
..+..+...-...++.+++...+...--+ .|.....-..-|.++...|++.+|+..++...+- .
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~--------~ 74 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS--------A 74 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------C
Confidence 34444444555588999998888776666 8888888889999999999999999999988763 3
Q ss_pred hhHHHHHHHHHHHHHHhchHH
Q 007930 531 PDIDDEKERLAELLKETGRAR 551 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~ 551 (584)
+..+.+.-.++.++..+|+.+
T Consensus 75 ~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 GAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CCchHHHHHHHHHHHhcCChH
Confidence 344555566777777777653
No 352
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=7.2 Score=37.59 Aligned_cols=227 Identities=13% Similarity=-0.043 Sum_probs=137.1
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
.|.-+......+.++...|+.+.|+..++.+++..- .......++.+|.++..+.+|..|-..+....+..+
T Consensus 263 ~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd-- 334 (546)
T KOG3783|consen 263 YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD-- 334 (546)
T ss_pred CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh--
Confidence 444455567778888888888888998888877211 234566788899999999999999998888776641
Q ss_pred CCCCChHHHHHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHHHHhCCCCcccH----------------------
Q 007930 358 APATAPEEIANGLTEISAIYE--------ALNEHEEALKLLQKAMKLLEDTPGYHSTI---------------------- 407 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---------------------- 407 (584)
...+..-+..|.++. ..|+-+.|..+++.........+...+..
T Consensus 335 ------WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~l 408 (546)
T KOG3783|consen 335 ------WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILL 408 (546)
T ss_pred ------hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccc
Confidence 111222222233332 23466666666666555544421111100
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+.-+..++.++..-.. -+..-..++........-++......-+..+|.++...|+...|..+|+..++. ......+
T Consensus 409 a~P~~El~Y~Wngf~~--~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d 485 (546)
T KOG3783|consen 409 ASPYYELAYFWNGFSR--MSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTED 485 (546)
T ss_pred cchHHHHHHHHhhccc--CChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccc
Confidence 0011122222211111 111111122221221111123334556777899999999999999999999876 2222334
Q ss_pred CCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHH
Q 007930 488 HLDTLGVYSNLAATYDALGR-VEDAIEILEYILKV 521 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~ 521 (584)
..-.+.+++.+|.+|..+|. ..++..++.+|.+-
T Consensus 486 ~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 486 LWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred cccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 55667899999999999999 99999999999875
No 353
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.33 E-value=8.6 Score=37.60 Aligned_cols=408 Identities=13% Similarity=0.033 Sum_probs=221.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
..|-.-..+..-|..-++.|. .+.++..|++++..+.. + .......++.+--..|+.+.-...|++|....
T Consensus 74 kyPl~~gyW~kfA~~E~klg~-~~~s~~Vfergv~aip~------S--vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~v 144 (577)
T KOG1258|consen 74 KYPLCYGYWKKFADYEYKLGN-AENSVKVFERGVQAIPL------S--VDLWLSYLAFLKNNNGDPETLRDLFERAKSYV 144 (577)
T ss_pred hCccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhh------H--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Confidence 445555556677788888898 89999999999986441 1 11122233444445677777777888888776
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHHhCCHHHHHHHHH
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA-ETCRYLAEAHIQAMQFDEAENLCK 224 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~ 224 (584)
....-... .|-..-..-..++++..-...|++.++. |... .-++..=.-+... +...-+...+
T Consensus 145 G~dF~S~~------lWdkyie~en~qks~k~v~~iyeRilei---------P~~~~~~~f~~f~~~l~~-~~~~~l~~~d 208 (577)
T KOG1258|consen 145 GLDFLSDP------LWDKYIEFENGQKSWKRVANIYERILEI---------PLHQLNRHFDRFKQLLNQ-NEEKILLSID 208 (577)
T ss_pred ccchhccH------HHHHHHHHHhccccHHHHHHHHHHHHhh---------hhhHhHHHHHHHHHHHhc-CChhhhcCHH
Confidence 33221111 1222223336677788888888888776 2221 1111111111111 1111111122
Q ss_pred HHHHHHHHhCC----CCCHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChh
Q 007930 225 KILEIHREHGH----SASLEEAADR-RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 225 ~al~~~~~~~~----~~~~~~a~~~-~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 299 (584)
++.++...... .........+ ..+-.+-...+.++++...+.+. ....=.++...-...
T Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~----------------~~~~~~~~~~s~~~~ 272 (577)
T KOG1258|consen 209 ELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI----------------VSIHEKVYQKSEEEE 272 (577)
T ss_pred HHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHH----------------HHHHHHHHHhhHhHH
Confidence 22221111100 0000000000 00000000011112221111111 111112333333444
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA 379 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 379 (584)
+.+-.++..+...-....+..+.....|......-...|+++...-.+++++--+. .....|...+.....
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA---------~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA---------LYDEFWIKYARWMES 343 (577)
T ss_pred HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh---------hhHHHHHHHHHHHHH
Confidence 44555555544322222223445566777777888889999999999999987662 346788888888888
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA 459 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (584)
.|+.+-|...+..+.++.... . ..+...-+.+-...|++..|...+++..+-. +....+-......
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~---~---~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKK---T---PIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINW 409 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCC---C---cHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhH
Confidence 899999988888887776443 1 2334455677788899999999999988742 3334444445556
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 007930 460 CLQLYRINEATELFEEARGVLEQECGSCHLDT-LGVYSNLAAT-YDALGRVEDAIEILEYILKVREEKLGTANPDIDDEK 537 (584)
Q Consensus 460 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~ 537 (584)
...+|+.+.+..+ ....... ..+..++.. ...+...++. +.-.++.+.|...+.+++++ .|.+...+
T Consensus 410 e~r~~~~~~~~~~-~~l~s~~--~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~ 478 (577)
T KOG1258|consen 410 ERRKGNLEDANYK-NELYSSI--YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLY 478 (577)
T ss_pred HHHhcchhhhhHH-HHHHHHh--cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHH
Confidence 6778888888752 2222211 112223332 2334445543 34568889999999999988 77777777
Q ss_pred HHHHHHHHHhc
Q 007930 538 ERLAELLKETG 548 (584)
Q Consensus 538 ~~l~~~~~~~g 548 (584)
..+..+...++
T Consensus 479 ~~~~~~~~~~~ 489 (577)
T KOG1258|consen 479 LELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhCC
Confidence 77777666655
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.05 E-value=0.14 Score=26.24 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
.+...+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678999999999999999988763
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.86 E-value=5.1 Score=38.71 Aligned_cols=26 Identities=19% Similarity=0.021 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKA 393 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a 393 (584)
..|..||.....+|+++-|.++|+++
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 35666666666666666666666554
No 356
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.85 E-value=5.3 Score=37.02 Aligned_cols=106 Identities=10% Similarity=-0.002 Sum_probs=80.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCch---------hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDR---------ALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 190 (584)
.-|..++++++|..|.--|..+++++.+..-... ....-.+.-.+..||..+++.+-|+....+.+.+
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l--- 257 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL--- 257 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc---
Confidence 4466777888999999999999888764321111 1111234567899999999999999999999888
Q ss_pred HhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 191 ALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 191 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
+|....-+...|.++..+.+|.+|-..+--+.-++.-.
T Consensus 258 -----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~ 295 (569)
T PF15015_consen 258 -----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLS 295 (569)
T ss_pred -----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888888999999999999999988776665544433
No 357
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.84 E-value=4.2 Score=32.61 Aligned_cols=133 Identities=17% Similarity=0.094 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh
Q 007930 76 KLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL 155 (584)
Q Consensus 76 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (584)
..+..+-+.++ .++|+.-|...-+- .....-..+....+.+....|+...|+..|.++-...+. +....
T Consensus 63 laAL~lA~~~k-~d~Alaaf~~lekt-------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~---P~~~r 131 (221)
T COG4649 63 LAALKLAQENK-TDDALAAFTDLEKT-------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI---PQIGR 131 (221)
T ss_pred HHHHHHHHcCC-chHHHHHHHHHHhc-------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC---cchhh
Confidence 34444555666 67777766654431 112223456678899999999999999999987644211 11110
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 007930 156 AKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILE 228 (584)
Q Consensus 156 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 228 (584)
. .+...-+..+...|-|++-.... +.+-++.+|....+.-.||..-++.|++..|.+.|.+...
T Consensus 132 d--~ARlraa~lLvD~gsy~dV~srv-------epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 132 D--LARLRAAYLLVDNGSYDDVSSRV-------EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred H--HHHHHHHHHHhccccHHHHHHHh-------hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1 23556677788888887655433 3334566888888999999999999999999999998766
No 358
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=8.4 Score=35.93 Aligned_cols=194 Identities=14% Similarity=0.103 Sum_probs=138.6
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
-.......+..+.++....++..|...+.+..-.+.+ +........++..++.++.+.+..-.+..+.-.++....+
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k---~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK---GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 3455667777899999999999999999998877655 4555667778888888888888877888777777766655
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc-----hHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA-----FFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
. ..+...+..-..++..+...|..++|...+..++......|.-... ..+.++..-+..+ ...+.+.+..+++
T Consensus 346 y-~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~ 423 (482)
T KOG4322|consen 346 Y-SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLD 423 (482)
T ss_pred h-ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHH
Confidence 4 3344445555688899999999999999999999876554332111 0111111111112 4567888888999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH---HHHHHHHHHH
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED---AIEILEYILK 520 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~ 520 (584)
+|-..+.+..- +....++.+..+..|...|+.++ +...|+++..
T Consensus 424 ~A~~~f~kL~~--he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 424 LAQSIFYKLGC--HEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHccc--hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 99888877754 66788899999999999998754 5555555554
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.57 E-value=2.1 Score=30.40 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 178 VWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
+..+++.++. +|....+.+.+|..+...|++++|++.+-.++...+...
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 3445566665 788999999999999999999999999988887765543
No 360
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.44 E-value=0.19 Score=25.68 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457789999999999999998876
No 361
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.42 E-value=11 Score=36.43 Aligned_cols=325 Identities=14% Similarity=0.087 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
.+|+.+-.-+..+ .+++....|++.+.. -|....+|...........+|+....+|.++|.-.-...
T Consensus 21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~--------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlD---- 87 (656)
T KOG1914|consen 21 DSWSQLIREAQTQ-PIDKVRETYEQLVNV--------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLD---- 87 (656)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhcc--------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHh----
Confidence 4577777777666 899999999998877 577788888888888999999999999999987543321
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HcCCcchHHHHHHHHHHHHH---------HcCChhHHHHHHHHH
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMI-ANGQENEVAAIDVSIGNIYM---------SLCRFDEAIFSYQKG 308 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~a 308 (584)
.- -..+..+....|+...+.+...+|..... +.+-+.....+|...+..+. ...+.+.-.+.|+++
T Consensus 88 --LW--~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 88 --LW--KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred --HH--HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 11 12234444455665555555555544332 33444444444444444332 222445555666666
Q ss_pred HHHHHHhhcCCcccHHHHHH-----------HHH--HHHHHcccHHHHHHHHHHHHHHHhcCC------CCC-Ch--HHH
Q 007930 309 LTVFKATRGEDHLSVASIFI-----------RLA--DLYYRIGKLRESKSYCENALRVCAKPA------PAT-AP--EEI 366 (584)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~~-----------~la--~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~-~~--~~~ 366 (584)
+.. .-......|. ..| .+--....|..|...+++...+.+... +.. .. ...
T Consensus 164 l~t-------Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~q 236 (656)
T KOG1914|consen 164 LVT-------PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQ 236 (656)
T ss_pred hcC-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHH
Confidence 542 0001111111 111 112233456667777766655543211 000 01 111
Q ss_pred HHHHHHHHHHHHHhc------CH--HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccH-------HHHHHHH
Q 007930 367 ANGLTEISAIYEALN------EH--EEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRY-------GEARSSF 431 (584)
Q Consensus 367 ~~~~~~la~~~~~~g------~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~ 431 (584)
...|.++...-...+ .. ..-.-.+++++....-.+.-+...+..+...+.++...|+. +++..+|
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHH
Confidence 223333322211111 11 11223455555555444333444445555666666666664 4556666
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh
Q 007930 432 ESAVVKLRASGESKSAFFGIVLNQMGLACLQLY---RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV 508 (584)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 508 (584)
+++++.... .....++.++..-...- +++.-..++++.+.+. +.+..-++..+-..-.+..-.
T Consensus 317 Er~I~~l~~-------~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~-------~~~~tLv~~~~mn~irR~eGl 382 (656)
T KOG1914|consen 317 ERAIEGLLK-------ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE-------DIDLTLVYCQYMNFIRRAEGL 382 (656)
T ss_pred HHHHHHHHH-------HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh-------ccCCceehhHHHHHHHHhhhH
Confidence 666654221 12233444443332222 2555666666666653 333334566666666666777
Q ss_pred HHHHHHHHHHHHH
Q 007930 509 EDAIEILEYILKV 521 (584)
Q Consensus 509 ~~A~~~~~~a~~~ 521 (584)
+.|...|.+|-+.
T Consensus 383 kaaR~iF~kaR~~ 395 (656)
T KOG1914|consen 383 KAARKIFKKARED 395 (656)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888888764
No 362
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.33 E-value=5.9 Score=40.30 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 347 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
|.-|+.+++.. +.+......+....|.-++..|++++|...|-+++...
T Consensus 350 y~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 44445555442 55566778888999999999999999999999887654
No 363
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.19 E-value=8 Score=34.33 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=85.3
Q ss_pred hcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 007930 127 SLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYL 206 (584)
Q Consensus 127 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 206 (584)
++++|++|++++...... +.+.|++..|.+...-.++...+.. .+........+
T Consensus 2 ~~kky~eAidLL~~Ga~~-----------------------ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl 55 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALI-----------------------LLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARL 55 (260)
T ss_dssp HTT-HHHHHHHHHHHHHH-----------------------HHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH-----------------------HHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHH
Confidence 456777777776665433 3444455555544444444443321 11112223344
Q ss_pred HHHHHHhCCH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-----------HHHHHH
Q 007930 207 AEAHIQAMQF-DEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA-----------SMVMIA 274 (584)
Q Consensus 207 a~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a-----------~~~~~~ 274 (584)
..+....+.- .+-.++.+++++.. +.. .........+..+|..+...|++.+|..+|-.+ +.....
T Consensus 56 ~~l~~~~~~~~p~r~~fi~~ai~WS-~~~-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~ 133 (260)
T PF04190_consen 56 IELISLFPPEEPERKKFIKAAIKWS-KFG-SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWST 133 (260)
T ss_dssp HHHHHHS-TT-TTHHHHHHHHHHHH-HTS-S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHH-ccC-CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 5444444322 23566777777777 332 244455678999999999999999999988422 111122
Q ss_pred cCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 007930 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVF 312 (584)
Q Consensus 275 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 312 (584)
.+...+...........|...++...|...+..-.+..
T Consensus 134 ~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~ 171 (260)
T PF04190_consen 134 KGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKL 171 (260)
T ss_dssp HTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred hcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33444443334444455678899999998887776653
No 364
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=92.04 E-value=3.7 Score=30.56 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc-------ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 285 DVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH-------LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
+..+|...++.+++-.++-+|++|+.+.++....+. ........+||..+..+|+.+-.++|++-|-+....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 355677778888888888888888888776632111 123456679999999999999999999887766544
No 365
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.99 E-value=16 Score=37.38 Aligned_cols=437 Identities=11% Similarity=0.001 Sum_probs=203.1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH-hcCChhhHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYC-SLGRFEEAVPVLERSIEV 144 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~ 144 (584)
.++........+-..++..|+ +++-...-.++.++++ ..|....-|. ....++ ..++-.++...|++++.-
T Consensus 108 i~~y~~~~~v~Li~llrk~~d-l~kl~~ar~~~~~~~p------l~~~lWl~Wl-~d~~~mt~s~~~~~v~~~~ekal~d 179 (881)
T KOG0128|consen 108 INSYKYAQMVQLIGLLRKLGD-LEKLRQARLEMSEIAP------LPPHLWLEWL-KDELSMTQSEERKEVEELFEKALGD 179 (881)
T ss_pred ccccchHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhcC------CChHHHHHHH-HHHHhhccCcchhHHHHHHHHHhcc
Confidence 344445556777777888888 6655444444444322 2222222222 122222 236778888888888754
Q ss_pred HHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 007930 145 VDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCK 224 (584)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (584)
... .......+......+..+...++++.-...|.+++...-.... ........+..+...|...-..++-+.++.
T Consensus 180 y~~---v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~ 255 (881)
T KOG0128|consen 180 YNS---VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFV 255 (881)
T ss_pred ccc---chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 311 1111111112233334456667888999999999887543322 223456677777777777666677777777
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHH--H-HHHHhccHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHcCChhH
Q 007930 225 KILEIHREHGHSASLEEAADRRLMA--L-VYEAKADYESALEHLVLASMVMIANG-QENEVAAIDVSIGNIYMSLCRFDE 300 (584)
Q Consensus 225 ~al~~~~~~~~~~~~~~a~~~~~l~--~-~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~ 300 (584)
..+...- +......-+.... . ......+++.|...+.+.+....... ..+.....+..+-......|+...
T Consensus 256 ~el~~~~-----D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 256 RELKQPL-----DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHhccc-----hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 7665431 1111111122222 1 11223445555544443332222111 122333344455555566677666
Q ss_pred HHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Q 007930 301 AIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY-RIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA 379 (584)
Q Consensus 301 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 379 (584)
-...+++++.- .+.....+...+...- .++-.+.+...+.+++..+ +.....+ ..+.+.+.
T Consensus 331 i~l~~eR~~~E--------~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c---------p~tgdL~-~rallAle 392 (881)
T KOG0128|consen 331 IQLIEERAVAE--------MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC---------PWTGDLW-KRALLALE 392 (881)
T ss_pred HHHHHHHHHHh--------ccccHHHHhhhhhhcccccccccccccccchhhcCC---------chHHHHH-HHHHHHHH
Confidence 66666665543 1222333333332211 1111222222222222221 1111111 11111111
Q ss_pred hcC--HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 007930 380 LNE--HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMG 457 (584)
Q Consensus 380 ~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (584)
.++ ...-...+.+++...-.. ......+.....-.....+++.-.+.|+.|...+....+.........+...|
T Consensus 393 R~re~~~vI~~~l~~~ls~~~~l----~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA 468 (881)
T KOG0128|consen 393 RNREEITVIVQNLEKDLSMTVEL----HNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWA 468 (881)
T ss_pred hcCcchhhHHHHHHHHHHHHHHH----HHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 111 111112222222210000 00000000000001112244445555666666555443322222345566666
Q ss_pred HHHHh-hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHH
Q 007930 458 LACLQ-LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD-IDD 535 (584)
Q Consensus 458 ~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~-~~~ 535 (584)
.+... +++.+.+..++...+.. .....+..|.....+-...|+...+..++++|+.- ..+|+ ...
T Consensus 469 ~~E~sl~~nmd~~R~iWn~imty-------~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~------~~~~~~~~e 535 (881)
T KOG0128|consen 469 QVEASLLKNMDKAREIWNFIMTY-------GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ------VVDPEDALE 535 (881)
T ss_pred HHHHHHhhchhhhhHhhhccccC-------CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc------CcCchhHHH
Confidence 66554 46777777666655543 23344446666777777789999999988888764 23443 445
Q ss_pred HHHHHHHHHHHhchHHHHH
Q 007930 536 EKERLAELLKETGRARNRK 554 (584)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~ 554 (584)
++..+-......|.++...
T Consensus 536 v~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 536 VLEFFRRFEREYGTLESFD 554 (881)
T ss_pred HHHHHHHHHhccccHHHHh
Confidence 6666666666667776665
No 366
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.89 E-value=3.6 Score=31.40 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 450 GIVLNQMGLACLQLYR---INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
..+.++++.++....+ ..+.+.+++..++. .......+..+.|+..+.+.++|+.++.+....++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~----- 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET----- 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh-----
Confidence 4677888888887654 45566666665541 112234568899999999999999999999999997
Q ss_pred CCCChhHHHHH
Q 007930 527 GTANPDIDDEK 537 (584)
Q Consensus 527 ~~~~p~~~~~~ 537 (584)
.|++.++.
T Consensus 101 ---e~~n~Qa~ 108 (149)
T KOG3364|consen 101 ---EPNNRQAL 108 (149)
T ss_pred ---CCCcHHHH
Confidence 66665554
No 367
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.86 E-value=2.5 Score=32.18 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhh
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP-DIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
.....++++.++....+.++- ++.+.+++.++...|| ...+..+.|+.-+.++|+|+.+. .++..+++..|++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv----~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~-~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDV----QEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSL-RYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHcccchHHH----HHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHH-HHHHHHHhhCCCcH
Confidence 346788999999887665432 3444444444432344 44678899999999999999999 99999998887765
Q ss_pred HH
Q 007930 570 KK 571 (584)
Q Consensus 570 ~~ 571 (584)
..
T Consensus 106 Qa 107 (149)
T KOG3364|consen 106 QA 107 (149)
T ss_pred HH
Confidence 44
No 368
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.82 E-value=26 Score=37.55 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=66.9
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHH
Q 007930 80 ETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFS 159 (584)
Q Consensus 80 ~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (584)
++..... |++|+..|++....+. ...+-.++.+.+|.....+-.-..--+.|.+|+..+....+.......
T Consensus 484 ~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 554 (932)
T PRK13184 484 AFLAEKL-YDQALIFYRRIRESFP------GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLE-- 554 (932)
T ss_pred HHHhhHH-HHHHHHHHHHHhhcCC------CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchH--
Confidence 3334444 5666655555544332 122345677777877766543333335666666666555444333222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q 007930 160 GYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAET 202 (584)
Q Consensus 160 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (584)
|...|.+|..+|+|++-++.+.-+++.+.. +|.....
T Consensus 555 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 591 (932)
T PRK13184 555 -YLGKALVYQRLGEYNEEIKSLLLALKRYSQ-----HPEISRL 591 (932)
T ss_pred -HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC-----CCccHHH
Confidence 888899999999999999999999988643 5665543
No 369
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.79 E-value=0.71 Score=27.31 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 537 KERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.+.||.+|...|+.+.|. ..++.++...+.....
T Consensus 2 kLdLA~ayie~Gd~e~Ar-~lL~evl~~~~~~q~~ 35 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGAR-ELLEEVIEEGDEAQRQ 35 (44)
T ss_pred chHHHHHHHHcCChHHHH-HHHHHHHHcCCHHHHH
Confidence 367999999999999999 8888888654444333
No 370
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.69 E-value=10 Score=35.41 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC-----cchHHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHH
Q 007930 242 AADRRLMALVYEAKADYESALEHLVLASMVMIANGQ-----ENEVAAIDVSIGNIYMSLCR---FDEAIFSYQKGLTVFK 313 (584)
Q Consensus 242 a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 313 (584)
+..++..|.+......|++|+..+-.|-+.+...+. ....+..-..+.+||+.+.+ ..+|..-+..+-+-+.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 444666677777778888888777766554433221 22333444556677776654 4566666655555555
Q ss_pred HhhcCC-----------cccH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 314 ATRGED-----------HLSV---ASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 314 ~~~~~~-----------~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
..+|++ .|.. ...+..-|.+.+.+|+-++|.++++.+.....+
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~e 299 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLE 299 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 444433 3433 344556689999999999999999999887655
No 371
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=13 Score=33.61 Aligned_cols=101 Identities=20% Similarity=0.170 Sum_probs=72.8
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Q 007930 251 VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL 330 (584)
Q Consensus 251 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 330 (584)
+..+.++.++|++++++..........+..+..+...+|.++...|+..++.+.+...-+......+-. +.....++.+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY~l 162 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFYSL 162 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHHHH
Confidence 334556899999999999888887777778888889999999999999999999988877766654332 3233444455
Q ss_pred H-HHHHHcccHHHHHHHHHHHHH
Q 007930 331 A-DLYYRIGKLRESKSYCENALR 352 (584)
Q Consensus 331 a-~~~~~~g~~~~A~~~~~~al~ 352 (584)
+ ..|...|++.......-.-+.
T Consensus 163 ssqYyk~~~d~a~yYr~~L~YL~ 185 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYRHALLYLG 185 (380)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhc
Confidence 4 445567777765444444333
No 372
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.46 E-value=16 Score=34.51 Aligned_cols=215 Identities=12% Similarity=0.050 Sum_probs=121.1
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.+....+|+.........++-+.|+...++++..... ....++.+|....+-+....+|+++.+....
T Consensus 298 ~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps------------L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 298 FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS------------LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc------------hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 4556667777777777888888888877777655421 3445666666666666666666665543321
Q ss_pred CC---------C--Ccc-cHHH-----------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 007930 400 TP---------G--YHS-TIAG-----------IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM 456 (584)
Q Consensus 400 ~~---------~--~~~-~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (584)
.+ + ..+ .... ++...-..-.+..-.+.|...|-++-+ .+-..+.. .+++.+
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk----~~~~~h~v--yi~~A~ 439 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK----EGIVGHHV--YIYCAF 439 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc----cCCCCcce--eeeHHH
Confidence 10 0 001 0000 111111111222234444455544433 22111111 112221
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007930 457 GLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536 (584)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~ 536 (584)
.-+...|++.-|...|+-.+.. .++........-..+...++-+.|..+|++++...++ ......
T Consensus 440 -~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~------~q~k~i 504 (660)
T COG5107 440 -IEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK------TQLKRI 504 (660)
T ss_pred -HHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH------hhhhHH
Confidence 2345679999999999988887 6666555555666677889999999999999886433 234556
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 537 KERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+..+...-..-|+...++ ..-+..-+.-|+.
T Consensus 505 y~kmi~YEs~~G~lN~v~-sLe~rf~e~~pQe 535 (660)
T COG5107 505 YDKMIEYESMVGSLNNVY-SLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHHhhcchHHHH-hHHHHHHHHcCcH
Confidence 666666666777777776 3333333444443
No 373
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.37 E-value=0.5 Score=39.46 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=54.7
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 501 TYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 501 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.....++.+.|.+.|.+++.+ -|+....|+++|....+.|+++.|. ..++..++.+|+....
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa-~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAA-AAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHH-HHHHHHHcCCcccccc
Confidence 445678999999999999998 8999999999999999999999999 8888888888776543
No 374
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.33 E-value=4.5 Score=31.59 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
....+..+...-...++++++...+...--+.|+.. .+-..-|.++...|++.+|+..++...+ .
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~-------e~d~~dg~l~i~rg~w~eA~rvlr~l~~--------~ 73 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK-------ELDMFDGWLLIARGNYDEAARILRELLS--------S 73 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc-------ccchhHHHHHHHcCCHHHHHHHHHhhhc--------c
Confidence 445555566666668899999888876655555542 2333568899999999999999998776 2
Q ss_pred CchHHHHHHHHHHHHHhhCCH
Q 007930 446 SAFFGIVLNQMGLACLQLYRI 466 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~ 466 (584)
.+..+..--.++.|+..+|+.
T Consensus 74 ~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCCchHHHHHHHHHHHhcCCh
Confidence 222344445566666666664
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.22 E-value=0.99 Score=26.70 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 496 SNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
+.||.+|..+|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6799999999999999999999986
No 376
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=90.12 E-value=12 Score=32.61 Aligned_cols=185 Identities=12% Similarity=0.088 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
+..+|.+....++|++.+.+..++++..... .....-.+.+..+|-. .|....+...+.. ++......+...
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~------eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~~ 76 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSE------ELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNED 76 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCc------cCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCchH
Confidence 3457788888999999999999988752110 0112233344444432 3555555555544 222211112111
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC---CchHHHHHHHHHHHHHhh-----CC-----HHHHHHH
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK---SAFFGIVLNQMGLACLQL-----YR-----INEATEL 472 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~-----g~-----~~~A~~~ 472 (584)
.. .+..-|. ..=-++-..++...+.+.....-+. +......+...|..|.-. |+ .++|...
T Consensus 77 ~~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 77 HV-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred HH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 00 1111111 1112334456666777665442211 122222333345444422 22 4689999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHH
Q 007930 473 FEEARGVLEQECGSCHLDTLGVYSNLAATYD-ALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 473 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 524 (584)
|++|.++......+.+|-......+.+..|+ -+++.++|....+++++-.-.
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~ 203 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 203 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999887778888887777777766554 569999999888888775433
No 377
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.95 E-value=2.8 Score=28.32 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHH
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELEL 114 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 114 (584)
.+..+...|..+-..|+ +++|+.+|+++++.+.++....++...
T Consensus 5 ~A~~~a~~AVe~D~~gr-~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 5 MARKYAINAVKAEKEGN-AEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 35567788888889999 999999999999998887654444333
No 378
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=89.81 E-value=2.7 Score=40.08 Aligned_cols=86 Identities=22% Similarity=0.099 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 464 YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVE---DAIEILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 464 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
+....|+..|.+++.. .|.....+.+.+.++++.+-.. .|+.-...++.+ +|....+++.|
T Consensus 388 ~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~l 451 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHH
Confidence 4566788888888877 7777788888888888765444 455555556665 89999999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 541 AELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 541 ~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
++++..++++.+|. .+...+....|
T Consensus 452 a~aL~el~r~~eal-~~~~alq~~~P 476 (758)
T KOG1310|consen 452 ARALNELTRYLEAL-SCHWALQMSFP 476 (758)
T ss_pred HHHHHHHhhHHHhh-hhHHHHhhcCc
Confidence 99999999999999 77777766666
No 379
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=89.79 E-value=15 Score=35.82 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=58.1
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHH--cCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHH
Q 007930 269 SMVMIANGQENEVAAIDVSIGNIYMS--LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346 (584)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 346 (584)
+-++-..+.......++.+||.+-.. ...-..++.+|.+++...+..++ .....-|..+|..+++.+++.+|+..
T Consensus 264 Lw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~---n~HvYPYty~gg~~yR~~~~~eA~~~ 340 (618)
T PF05053_consen 264 LWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN---NHHVYPYTYLGGYYYRHKRYREALRS 340 (618)
T ss_dssp HHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT---T--SHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc---CCccccceehhhHHHHHHHHHHHHHH
Confidence 33334444555566666666666542 33456789999999999888874 33455677889999999999999999
Q ss_pred HHHHHHHHhcC
Q 007930 347 CENALRVCAKP 357 (584)
Q Consensus 347 ~~~al~~~~~~ 357 (584)
+-++-......
T Consensus 341 Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 341 WAEAADVIRKY 351 (618)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHc
Confidence 99998887663
No 380
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.65 E-value=4.9 Score=37.85 Aligned_cols=76 Identities=12% Similarity=-0.013 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
-++..+.+++..+|+|..|++.++..---...++....+-...+++.+|.+|+..++|.+|++.|...+-...+..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466778899999999999988765421111122233455677899999999999999999999999987655443
No 381
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=89.38 E-value=1.3 Score=38.79 Aligned_cols=71 Identities=20% Similarity=0.085 Sum_probs=58.5
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHH
Q 007930 414 MGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLG 493 (584)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 493 (584)
.+.-..+.|+.++|..+|+-++.+ .|....++..+|......++.-+|-.+|-+|+.+ .|...+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~nse 185 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPGNSE 185 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCCchH
Confidence 344456789999999999999996 4456789999999999999999999999999998 777666
Q ss_pred HHHHHHH
Q 007930 494 VYSNLAA 500 (584)
Q Consensus 494 ~~~~la~ 500 (584)
++.+.++
T Consensus 186 ALvnR~R 192 (472)
T KOG3824|consen 186 ALVNRAR 192 (472)
T ss_pred HHhhhhc
Confidence 6666554
No 382
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.34 E-value=12 Score=33.21 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (584)
.++..++..+...|+++.++..+++.+.. +|..-..+..+-..|...|+...|+..|++.-+......+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 56788899999999999999999999988 8888899999999999999999999999999886544443
No 383
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.04 E-value=0.9 Score=42.52 Aligned_cols=75 Identities=17% Similarity=0.061 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
++..|.+++...|+|..|++.++..---....+....+-...+++.+|.+|..+++|.+|++.|..++-...+.-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677888999999999998765432222223333455667899999999999999999999999988765544
No 384
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=88.28 E-value=8.9 Score=28.66 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc-------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD-------TLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
+..+|....+.+++-.++-.|++|+.+.++.......+ ......+||..+..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 45678888899999999999999999988874322222 12357899999999999999999999887765555
Q ss_pred hC
Q 007930 526 LG 527 (584)
Q Consensus 526 ~~ 527 (584)
..
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 44
No 385
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.22 E-value=41 Score=36.17 Aligned_cols=107 Identities=12% Similarity=0.045 Sum_probs=74.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH
Q 007930 121 LAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA 200 (584)
Q Consensus 121 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (584)
...++.....|+.|+..|++...-++ |.... .++.+.+|.....+-.-..--+.|.+|+..+....+ .+...
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 552 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFP---GRKEG---YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAP 552 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCC---Ccccc---hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCc
Confidence 45566677788888888888665542 22211 145777777776554333333667777777766633 45555
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (584)
--|...|.+|...|++++-++++.-+++.++..+.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 66777888999999999999999999999887664
No 386
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=88.12 E-value=10 Score=29.13 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Q 007930 338 GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVM 417 (584)
Q Consensus 338 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 417 (584)
+.-..-...+++++........-.+.+....+|...+.... .+.+.|...... +-....+..|...|..
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~-----~IG~~~A~fY~~wA~~ 108 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK-----GIGTKLALFYEEWAEF 108 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH-----TTSTTBHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc-----CccHHHHHHHHHHHHH
Confidence 45556677888888887553212234445555555554322 666777654432 2233347788899999
Q ss_pred HHHhccHHHHHHHHHHHH
Q 007930 418 LYVVGRYGEARSSFESAV 435 (584)
Q Consensus 418 ~~~~g~~~~A~~~~~~a~ 435 (584)
+...|++++|.+.|+.++
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
Confidence 999999999999998864
No 387
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=87.81 E-value=18 Score=31.59 Aligned_cols=182 Identities=15% Similarity=0.089 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHcCCcch
Q 007930 203 CRYLAEAHIQAMQFDEAENLCKKILEIH-REHGHSASLEEAADRRLMALVYEA-KADYESALEHLVLASMVMIANGQENE 280 (584)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~a~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 280 (584)
+..+|.+..+.++|++.+.+.+++.+.. +.... ..-.+.+..+|.. .|....+...+......-...+....
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt------~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~ 77 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELT------VEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDH 77 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCC------HHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHH
Confidence 3457788888999999999999988752 21111 1114444544443 25555555555431111001111111
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc---ccHHHHHHHHHHHHHHc-----cc-----HHHHHHHH
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH---LSVASIFIRLADLYYRI-----GK-----LRESKSYC 347 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~~~ 347 (584)
. .+..-|. ..=-++-...+..++.+.....-+.. ...+..+-..|..|... |+ .+.|...|
T Consensus 78 ~-----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY 151 (244)
T smart00101 78 V-----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAY 151 (244)
T ss_pred H-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 1 1111111 11123445566677777655443321 12223333445555432 21 45889999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 007930 348 ENALRVCAKPAPATAPEEIANGLTEISAIYE-ALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 348 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 397 (584)
++|+++..... .+.+|.......+.+..|+ -+++.++|....++++.-.
T Consensus 152 ~~A~e~a~~~L-~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 152 KSAQDIALAEL-PPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999987643 4445555555555555554 5689999988877776654
No 388
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.70 E-value=20 Score=32.09 Aligned_cols=111 Identities=16% Similarity=0.058 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
....+...||.+|-..++|..|-..+.-. .........+.......+..+|.+|...++..+|..+..++.-......+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 45678889999999999999988766432 11111111123334566888999999999999999999988655554444
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGL 309 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (584)
+......-.-.|+++-..++|-+|...|-+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556777777788877776666543
No 389
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.70 E-value=2.8 Score=37.90 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
.-+...|+-...++++++|...|..|..+..+++|..|-++..+++..|..++..++.+...
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788889999999999999999999999999999999999999999999999988775
No 390
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=87.11 E-value=5.6 Score=27.20 Aligned_cols=48 Identities=17% Similarity=0.018 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLH 119 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 119 (584)
+..+...|...=..|+ +++|+.+|.++++.+.......+++..-..+.
T Consensus 6 a~~l~~~Ave~D~~g~-y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r 53 (77)
T cd02683 6 AKEVLKRAVELDQEGR-FQEALVCYQEGIDLLMQVLKGTKDEAKKKNLR 53 (77)
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 4557778888888899 99999999999999888665555554444433
No 391
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.10 E-value=32 Score=33.77 Aligned_cols=156 Identities=15% Similarity=0.071 Sum_probs=93.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCC---------------chhHHHHHHHHHHHHHHhc
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSG---------------QELELVMSLHMLAAIYCSL 128 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~ 128 (584)
..++|-.++.++.++.+...+|+ .+-|.+..++++=.+++..... .+.....+++..-....+.
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD-~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~R 355 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGD-REMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQR 355 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhc
Confidence 35678999999999999999999 8999999999998877764311 1122334444445556678
Q ss_pred CChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 007930 129 GRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208 (584)
Q Consensus 129 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 208 (584)
|-+..|.+++.-.+.+.+ ..+|... .+.+-....+..+|.=-++.++..-.. .++ ..-|.... -..+|.
T Consensus 356 GC~rTA~E~cKlllsLdp----~eDPl~~---l~~ID~~ALrareYqwiI~~~~~~e~~-n~l--~~~PN~~y-S~AlA~ 424 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDP----SEDPLGI---LYLIDIYALRAREYQWIIELSNEPENM-NKL--SQLPNFGY-SLALAR 424 (665)
T ss_pred CChHHHHHHHHHHhhcCC----cCCchhH---HHHHHHHHHHHHhHHHHHHHHHHHHhh-ccH--hhcCCchH-HHHHHH
Confidence 999999999988887752 2244321 222333333444554444444433211 000 00122221 123445
Q ss_pred HHHHhCC---HHHHHHHHHHHHHHHH
Q 007930 209 AHIQAMQ---FDEAENLCKKILEIHR 231 (584)
Q Consensus 209 ~~~~~g~---~~~A~~~~~~al~~~~ 231 (584)
.|..... -..|...+.+|+.+.|
T Consensus 425 f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 425 FFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 5555444 4567788888887765
No 392
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=87.05 E-value=15 Score=29.88 Aligned_cols=148 Identities=10% Similarity=0.136 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-----HhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc-
Q 007930 222 LCKKILEIHREHGHSASLEEAADRRLMALVYE-----AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL- 295 (584)
Q Consensus 222 ~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~- 295 (584)
.|+.+.+++..+-+.+ ..+...+.+|..+. ..++...|++.+..+-. .....+..++|.++..-
T Consensus 50 nF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHHHhhhhhhhccCc
Confidence 3444444444443221 12334555555444 34678888888887643 33445556667666532
Q ss_pred ----CC--hhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH------------------------HcccHHHHHH
Q 007930 296 ----CR--FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY------------------------RIGKLRESKS 345 (584)
Q Consensus 296 ----g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~A~~ 345 (584)
++ ..+|++++.++-++ ....+.+.|...|. ...+.+.|..
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q 189 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ 189 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence 23 66788888887654 22223333333333 2345566666
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhC
Q 007930 346 YCENALRVCAKPAPATAPEEIANGLTEISAIYEAL----NEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 346 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~ 400 (584)
+.-++-++. ...+..++.+.|..- .+.++|..+-.+|.++..+.
T Consensus 190 fa~kACel~-----------~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 190 FAIKACELD-----------IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred HHHHHHhcC-----------ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 666665542 245566666666532 35778888888888877654
No 393
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.03 E-value=7.4 Score=26.34 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
..+...|.-+-..|++++|+.+|+++++++.+...
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677899999999999999999888765
No 394
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=86.88 E-value=15 Score=29.83 Aligned_cols=174 Identities=12% Similarity=0.026 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHH-----HcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc-
Q 007930 264 HLVLASMVMIANGQENEVAAIDVSIGNIYM-----SLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI- 337 (584)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 337 (584)
.|+.|..++...-+....+...+.+|..++ ..++...|++.+..+-+. ..+.+...+|.+++.-
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCc
Confidence 455555555565566666667777776665 345677888888877653 3445566667666542
Q ss_pred ----c--cHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHH
Q 007930 338 ----G--KLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIE 411 (584)
Q Consensus 338 ----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 411 (584)
+ +..+|++++.++-++.. ..+...|...|..- .+++ ....+.. +.++
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl~~-----------~~aCf~LS~m~~~g--~~k~-------~t~ap~~-g~p~------ 172 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDLED-----------GEACFLLSTMYMGG--KEKF-------KTNAPGE-GKPL------ 172 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccCCC-----------chHHHHHHHHHhcc--chhh-------cccCCCC-CCCc------
Confidence 2 36788888888876631 34555555555432 1221 1111111 2232
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHHHHHhC
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL----YRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
..+..+.-..+.++|.++--+|.++ . ...+..++.+.|..- .+-++|..+-.+|.++.+++..
T Consensus 173 -~~~~~~~~~kDMdka~qfa~kACel-------~---~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~k 239 (248)
T KOG4014|consen 173 -DRAELGSLSKDMDKALQFAIKACEL-------D---IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELRK 239 (248)
T ss_pred -chhhhhhhhHhHHHHHHHHHHHHhc-------C---ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence 2344555667888999888888775 2 245666777776542 4688999999999999877654
No 395
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.36 E-value=5.6 Score=26.48 Aligned_cols=45 Identities=22% Similarity=0.087 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVM 116 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 116 (584)
+-.+...|...-..|+ +++|+.+|.+++..+........++..-.
T Consensus 5 A~~~~~~Av~~D~~g~-~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~ 49 (69)
T PF04212_consen 5 AIELIKKAVEADEAGN-YEEALELYKEAIEYLMQALKSESNPERRQ 49 (69)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 3456778888888999 99999999999998776654333344333
No 396
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.85 E-value=3.4 Score=37.44 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENL 222 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 222 (584)
.-+...|+-.+.++++++|...|..|..+....+|..+.....+++..|..++..+++...+-.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4477889999999999999999999999999999999999999999999999998887765543
No 397
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.83 E-value=38 Score=33.33 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=102.6
Q ss_pred CChhHHHHHHHHHHHHHHHhh----cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC------------
Q 007930 296 CRFDEAIFSYQKGLTVFKATR----GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP------------ 359 (584)
Q Consensus 296 g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------ 359 (584)
.-|++|...|.-+.....-.. -..+|.....+..++.++..+|+.+.|....++++-......-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 345566666655554422100 0126788899999999999999999999999998866544310
Q ss_pred ---CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 360 ---ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 360 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
...+.....++...-..+...|.+..|.++++-.+.+.+.. ++. .+.+.+-...++..+|+=-+..++..-.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e--DPl---~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE--DPL---GILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC--Cch---hHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 01112233344445566678899999999999888876552 111 2222333333455566555555554422
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHH
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYR---INEATELFEEARGVLE 481 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 481 (584)
. ..+. ..|..+ .-..++..|..... -+.|...+.+|+.++.
T Consensus 407 ~-n~l~--~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 407 M-NKLS--QLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred h-ccHh--hcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 1 1110 011111 12235556665554 5778888888888743
No 398
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.74 E-value=26 Score=31.43 Aligned_cols=112 Identities=10% Similarity=-0.059 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
.....+...+|.+|...++|..|...+.-.-.-- .....+.......+..+|++|...++..+|..+..++--+....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~t-g~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDT-GQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccc-chhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 3456778889999999999999887764321110 00000122345678899999999999999999998876553322
Q ss_pred CCCChh-HHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 527 GTANPD-IDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 527 ~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
.++. ......-.|+++...+++-+|.+.+.+...
T Consensus 178 --~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 178 --SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 233334458888888999998866665443
No 399
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=85.53 E-value=0.72 Score=42.92 Aligned_cols=74 Identities=23% Similarity=0.262 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 474 EEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 474 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
-+++-+.+++.++.||+........|-+|..+|+++.-+++++-|+.+.++.+.|-.|.+...+...++++...
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 35677778889999999877677789999999999999999999999999999999999999999998887654
No 400
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.25 E-value=11 Score=35.16 Aligned_cols=132 Identities=17% Similarity=0.105 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS---CHLDTLGVYSNLAATYDALGR---VEDAIEILEYILKVRE 523 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 523 (584)
+..++..|.+.+....|++|+.++-.|-+.+..-... .-.+.+..-..+.+||+.+.+ ..+|..-+..+-.-+.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 3445566777777788888887777766655332110 112334445566788887765 3466666666666555
Q ss_pred HHhC-----------CCChhHH---HHHHHHHHHHHHhchHHHHHHHHHHHHHh-hhhhhhHHHHHhHhhcCCC
Q 007930 524 EKLG-----------TANPDID---DEKERLAELLKETGRARNRKGKSLENLLD-SNAYRVKKEVTKRRSGFGF 582 (584)
Q Consensus 524 ~~~~-----------~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 582 (584)
..+| +..|+.+ ..+..-|.+.+.+|+.++|+ .+++.+.. ...-.++.+.+...-++||
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAy-e~le~a~~~l~elki~d~~lsllv~mGf 315 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAY-EALESAHAKLLELKINDETLSLLVGMGF 315 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHeeccchHHHHHHHcCC
Confidence 5444 4445543 33445588999999999999 77776553 2222333334444444554
No 401
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.87 E-value=4.6 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH--HHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILE--YILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~--~a~~~ 521 (584)
+.++.+|-.+..+|++++|+..|. -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 457889999999999999999944 65554
No 402
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=84.72 E-value=19 Score=35.36 Aligned_cols=98 Identities=19% Similarity=0.084 Sum_probs=73.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH-HHHHHHHHhCCCChhHH
Q 007930 456 MGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY-ILKVREEKLGTANPDID 534 (584)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~~~~~~~~~~~~p~~~ 534 (584)
+...+...+....+.-.+..++.. ++....+..+|+......|....+...+.+ +... .|.+.
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~--------~~~~~ 136 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL--------SPDNA 136 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--------CcchH
Confidence 666677778888888888888887 888889999999998888887777766665 4444 45555
Q ss_pred HHHHHH------HHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 535 DEKERL------AELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 535 ~~~~~l------~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.....+ +.....+|+..++. ..++.+.+..|+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~d~~p~~~~ 177 (620)
T COG3914 137 EFLGHLIRFYQLGRYLKLLGRTAEAE-LALERAVDLLPKYPR 177 (620)
T ss_pred HHHhhHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhhhhhhh
Confidence 555444 88888888888887 777777777666543
No 403
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=84.54 E-value=31 Score=31.31 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=67.4
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 007930 377 YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM 456 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (584)
....++.++|++++++..+..... ..+..+..+...+|.++...|+..++.+.+...-........-.+. +-..++.+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~-Vh~~fY~l 162 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSN-VHSSFYSL 162 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChh-hhhhHHHH
Confidence 345568999999999998877665 4445666777889999999999999999999988877776554332 33445555
Q ss_pred HHH-HHhhCCHHHHHHHH
Q 007930 457 GLA-CLQLYRINEATELF 473 (584)
Q Consensus 457 ~~~-~~~~g~~~~A~~~~ 473 (584)
+.- |...|++.......
T Consensus 163 ssqYyk~~~d~a~yYr~~ 180 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYRHA 180 (380)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 544 44557776544433
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=84.34 E-value=17 Score=27.97 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=53.8
Q ss_pred CChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 007930 129 GRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAE 208 (584)
Q Consensus 129 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 208 (584)
+.-..-..++++++........-.+....+..+...+. . ..++...|...... -. ....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~--~~~~~~if~~l~~~---~I---G~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----L--SSDPREIFKFLYSK---GI---GTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----T--BSHHHHHHHHHHHH---TT---STTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----H--ccCHHHHHHHHHHc---Cc---cHHHHHHHHHHHH
Confidence 45555667888888887543322222222233333332 2 22777777766543 12 2345778888899
Q ss_pred HHHHhCCHHHHHHHHHHHH
Q 007930 209 AHIQAMQFDEAENLCKKIL 227 (584)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al 227 (584)
.+...|++.+|.++|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998864
No 405
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=84.23 E-value=9.7 Score=25.92 Aligned_cols=47 Identities=21% Similarity=0.077 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSL 118 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 118 (584)
+..++..|...-..|+ +++|+.+|.++++.+-......+++.....+
T Consensus 6 A~~l~~~Av~~D~~g~-y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~ 52 (75)
T cd02678 6 AIELVKKAIEEDNAGN-YEEALRLYQHALEYFMHALKYEKNPKSKESI 52 (75)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 4456777877888898 9999999999999988765444444443333
No 406
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.99 E-value=5.9 Score=37.38 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=65.5
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 499 (584)
..|+.-.|-.-...++... +..+......+.+....|.|+.|...+..+-.+. + ....+...+-
T Consensus 301 ~~gd~~aas~~~~~~lr~~--------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~----s~~~~~~~~~ 364 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII----G----TTDSTLRCRL 364 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh----c----CCchHHHHHH
Confidence 3456555555555555421 1122333445677778888888877776655442 1 1123444555
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 500 ATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+....+|++++|...-+-.+.- .-++.+...--+-.-..+|-++++. .+.+.++..+|+
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~--------eie~~ei~~iaa~sa~~l~~~d~~~-~~wk~~~~~~~~ 423 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSN--------EIEDEEVLTVAAGSADALQLFDKSY-HYWKRVLLLNPE 423 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhcc--------ccCChhheeeecccHHHHhHHHHHH-HHHHHHhccCCh
Confidence 5566677777666554443321 2233333333344445566667776 666666655544
No 407
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.92 E-value=19 Score=31.93 Aligned_cols=73 Identities=18% Similarity=0.063 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
.+...+..|...|.+.+|+.+.++++.. ++.....+..+-.++...|+--.|+..|++.-+..+...|-+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 4456678899999999999999999985 45556778888899999999999999999998888777775433
Q ss_pred c
Q 007930 490 D 490 (584)
Q Consensus 490 ~ 490 (584)
+
T Consensus 353 d 353 (361)
T COG3947 353 D 353 (361)
T ss_pred h
Confidence 3
No 408
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=82.99 E-value=12 Score=25.50 Aligned_cols=44 Identities=16% Similarity=0.044 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELV 115 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 115 (584)
+..+...|...-..|+ +++|+.+|.++++.+.......+++...
T Consensus 8 A~~li~~Av~~d~~g~-~~eAl~~Y~~a~e~l~~~~~~~~~~~~~ 51 (77)
T smart00745 8 AKELISKALKADEAGD-YEEALELYKKAIEYLLEGIKVESDSKRR 51 (77)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 3456677777878898 9999999999999988766444444433
No 409
>PF12854 PPR_1: PPR repeat
Probab=82.67 E-value=3.3 Score=22.80 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQK 392 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~ 392 (584)
..+|+.+...+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 46889999999999999999999875
No 410
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.48 E-value=12 Score=24.91 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHH
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKVREEKLG-TANPDIDDEK 537 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~p~~~~~~ 537 (584)
...|.-+-..|++++|+.+|.++++.+...+. ..+|.....+
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l 51 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQAL 51 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 34455556789999999999999998877655 2244444443
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.15 E-value=47 Score=31.59 Aligned_cols=67 Identities=12% Similarity=-0.094 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 007930 116 MSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEI 187 (584)
Q Consensus 116 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 187 (584)
.-....+...+..++|..|...+...... ..+... .........|..++..-++.+|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455677788899999999999987764 111111 11122334455666778889999988887665
No 412
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=4 Score=36.90 Aligned_cols=125 Identities=15% Similarity=0.129 Sum_probs=88.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC-----------CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGES-----------KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLE 481 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 481 (584)
..+.-..+.+++..|..-+.+++......... ....-.....+++.+-...+.+..|+..-..++..
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~-- 304 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD-- 304 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc--
Confidence 34556778888888888888887765421100 01112234556777778888888888776666663
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNR 553 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (584)
.+....+++..+..+....++++|++.++.+... .|+.......+..+-....++.+-
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~--------~p~d~~i~~~~~~~~~~~~~~~~~ 362 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK--------APNDKAIEEELENVRQKKKQYNRK 362 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc--------CcchHHHHHHHHHhhhHHHHHHHH
Confidence 6677789999999999999999999999999887 777777766666665555554443
No 413
>PF12854 PPR_1: PPR repeat
Probab=81.44 E-value=3.8 Score=22.56 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 007930 322 SVASIFIRLADLYYRIGKLRESKSYCEN 349 (584)
Q Consensus 322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~ 349 (584)
....+|..+-..|.+.|+.++|.+.+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3456888999999999999999999876
No 414
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=81.25 E-value=17 Score=31.98 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
......++=..+...++++.|..+.++.+.+ +|..+.-+...|.+|.++|.+.-|++.++..++.
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 4556667777888899999999999999998 7887777889999999999999999999998876
No 415
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.20 E-value=10 Score=36.41 Aligned_cols=84 Identities=14% Similarity=-0.045 Sum_probs=62.5
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL---YRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 422 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
+....|+..|.+++.. .+.....+.+.+.++++. |+.-.|+.-...|+++ +|....+++.|
T Consensus 388 ~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~l 451 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHH
Confidence 3455667777777663 334456777788888775 4555666666777777 88899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
++++..++++.+|+.+...+...
T Consensus 452 a~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 452 ARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred HHHHHHHhhHHHhhhhHHHHhhc
Confidence 99999999999999887766554
No 416
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=81.08 E-value=15 Score=25.04 Aligned_cols=48 Identities=19% Similarity=0.064 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLH 119 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 119 (584)
+-.++..|...-..|+ +++|+.+|.++++.+-.......++..-..+.
T Consensus 6 Ai~lv~~Av~~D~~g~-y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr 53 (75)
T cd02684 6 AIALVVQAVKKDQRGD-AAAALSLYCSALQYFVPALHYETDAQRKEALR 53 (75)
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 3456777777778888 99999999999999887665555555544443
No 417
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=80.79 E-value=5.5 Score=35.94 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 469 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
|..+|.+|..+ .|.....+..||.++...|+.-.|+-+|-+++-. ..|. ..+..+|..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 67899999999 8999999999999999999999999999999865 3555 6788888888887
No 418
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=80.50 E-value=15 Score=24.90 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHH
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMS 117 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 117 (584)
..+...|...-..|+ +++|+.+|..|++.+.......+++..-..
T Consensus 7 ~~l~~~Av~~D~~g~-~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~ 51 (75)
T cd02656 7 KELIKQAVKEDEDGN-YEEALELYKEALDYLLQALKAEKEPKLRKL 51 (75)
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 345667777777888 999999999999998876644444443333
No 419
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=80.36 E-value=28 Score=27.74 Aligned_cols=132 Identities=15% Similarity=0.032 Sum_probs=86.3
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 007930 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501 (584)
Q Consensus 422 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 501 (584)
++-+-|...++..+... +......+.......-...|.+.+|..++.+.++. .+..+...+|..++.|
T Consensus 71 ~N~eLa~~tLEnLvt~s------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~n------k~YSeistsYaRi~wc 138 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNS------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIEN------KEYSEISTSYARINWC 138 (220)
T ss_pred CcHHHHHHHHHHHHHcc------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhh------hhHHHHHHHHHHHHHH
Confidence 45555666666644421 11111223333344455678999999999999886 2355677788889988
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 502 YDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 502 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
.....+-..-...-++..+......++..|..+.+-..-+..-.+.|...+|. +.++.++..+-
T Consensus 139 ~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~ae-knL~~l~~Snn 202 (220)
T PF10858_consen 139 CMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAE-KNLKNLLASNN 202 (220)
T ss_pred HheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhcc
Confidence 88776655444444555555555566777777776666676677888888998 99999886543
No 420
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.85 E-value=57 Score=31.06 Aligned_cols=139 Identities=18% Similarity=0.005 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH--HHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEI--SAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
.....+.-.+..++|..|...+........ +.. . ...+..+ |..++..-++++|.+.++..+......
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~----~~~-~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l--- 202 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLP----GRE-E--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL--- 202 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----chh-h--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh---
Confidence 444556677889999999999999887521 111 1 3444444 444567788999999999877653220
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
..-...+..+-+.-++...+.....................+...|.--...|+|+.|+..+-+++++.-+
T Consensus 203 --------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 --------NQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred --------HhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 00011111111111222222222221111000001111122222233334579999999999999988654
No 421
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=79.65 E-value=16 Score=31.42 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=66.0
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhccC---CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH
Q 007930 124 IYCSLGRFEEAVPVLERSIEVVDIGKG---SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA 200 (584)
Q Consensus 124 ~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (584)
-.+..|+|+.|+++..-+++.....++ .+.+...+.-....+......|+.-+. .+......+... ..-.+.-.+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~-~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTE-WDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhc-CCCChHHHH
Confidence 346789999999999999987533322 223333334445555566666653222 123333333211 111233445
Q ss_pred HHHHHHHHHHH---------HhCCHHHHHHHHHHHHHHHHHhC
Q 007930 201 ETCRYLAEAHI---------QAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 201 ~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
..+...|..+. ..++...|+.++++++.+.++.+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 66777777773 45688899999999999987766
No 422
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.30 E-value=6.2 Score=22.16 Aligned_cols=28 Identities=25% Similarity=0.148 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH--HHHH
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCK--KILE 228 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~--~al~ 228 (584)
+.+..+|..+...|++++|+..++ -+..
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456778999999999999999955 4443
No 423
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.07 E-value=55 Score=34.71 Aligned_cols=183 Identities=14% Similarity=0.068 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHhCCC-
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH--EEALKLLQKAMKLLEDTPG- 402 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~- 402 (584)
-+..|+.+|...|++++|++.+.+...-... ........+-.+-..+...+.. +-..++-.-.+...+...-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~-----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~ 580 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSD-----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ 580 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccc-----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhhee
Confidence 4567889999999999999999988774321 0111122233333333444433 4444444333333222200
Q ss_pred ---C-cc-cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh--------hCCHHHH
Q 007930 403 ---Y-HS-TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ--------LYRINEA 469 (584)
Q Consensus 403 ---~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A 469 (584)
. .. ....+-.....-|......+-++.|++.++...+..+. ..+..+...|.. .++-+++
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~-------~lht~ll~ly~e~v~~~~~~~~kg~e~ 653 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTST-------LLHTVLLKLYLEKVLEQASTDGKGEEA 653 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccch-------HHHHHHHHHHHHHHhhccCchhccccc
Confidence 0 00 00111111223346677888899999998876443221 222233333322 2333455
Q ss_pred HHH-HHHHHHHHHHHhCCCCCc-------hHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 470 TEL-FEEARGVLEQECGSCHLD-------TLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 470 ~~~-~~~a~~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
.+. +++-+..+.......+|. ....+...+.++.++|+.++|+..|-..+.
T Consensus 654 ~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 654 PETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 555 232222222222222221 245677888999999999999998876665
No 424
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=78.87 E-value=62 Score=30.89 Aligned_cols=232 Identities=11% Similarity=0.055 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
..+.|+.-.......++-+.|+...++++... |. ..+.++.+|....+-+.-..+|+++.+...+.+.
T Consensus 301 ~~evw~dys~Y~~~isd~q~al~tv~rg~~~s--------ps----L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys 368 (660)
T COG5107 301 AEEVWFDYSEYLIGISDKQKALKTVERGIEMS--------PS----LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYS 368 (660)
T ss_pred hHHHHHHHHHHHhhccHHHHHHHHHHhcccCC--------Cc----hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHh
Confidence 34556666666667788888888877776543 21 2556777777777777777778777665433211
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMI 273 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 273 (584)
....+.. -...|+++...+++-+-.. +. ..++...-..-.+..-.+.|...|-++-+
T Consensus 369 ~~~s~~~---------s~~D~N~e~~~Ell~kr~~---k~--------t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk--- 425 (660)
T COG5107 369 MGESESA---------SKVDNNFEYSKELLLKRIN---KL--------TFVFCVHLNYVLRKRGLEAARKLFIKLRK--- 425 (660)
T ss_pred hhhhhhh---------ccccCCccccHHHHHHHHh---hh--------hhHHHHHHHHHHHHhhHHHHHHHHHHHhc---
Confidence 1110000 0012334222222211111 00 01122222222233334555555554422
Q ss_pred HcCCcchHHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 007930 274 ANGQENEVAAIDVSIG-NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALR 352 (584)
Q Consensus 274 ~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 352 (584)
.+-... .++..-| .-+...|++.-|...|+-.+.. .++........-..+...++-..|..+|++++.
T Consensus 426 -~~~~~h--~vyi~~A~~E~~~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 426 -EGIVGH--HVYIYCAFIEYYATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred -cCCCCc--ceeeeHHHHHHHhcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 221111 1111112 2345788999999999888876 455555555555667788999999999999887
Q ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 353 VCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
...+ .....+|..+-..-..-|+...+..+-++.....+
T Consensus 495 r~~~-------~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 495 RLEK-------TQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHH-------hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 7644 12344555555555566666666655555444443
No 425
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=78.72 E-value=51 Score=29.84 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=30.9
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 292 YMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 292 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
..+..+..+-++....++++ ++..+.++..++.--. --..+|...++++++..
T Consensus 194 AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHH
Confidence 33444555556666666666 5666666666654322 23456777777776654
No 426
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=78.20 E-value=45 Score=29.98 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh
Q 007930 386 ALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ 462 (584)
Q Consensus 386 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (584)
|..+|.+|..+.|.. ...++.+|.++...|+.-.|+-+|-+++-. ..| ...+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~-------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-------GNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIP-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-------CCcccchhhhhccccchHHHHHHHHHHHhc-------CCC-cHHHHHHHHHHHHH
Confidence 678999999999988 578899999999999999999999999863 223 35677777777766
No 427
>PF13041 PPR_2: PPR repeat family
Probab=78.00 E-value=12 Score=22.75 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTV 311 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (584)
..|..+-..+.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 35677888899999999999999987754
No 428
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.90 E-value=12 Score=36.80 Aligned_cols=80 Identities=26% Similarity=0.208 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF 448 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 448 (584)
....++..+..+|-.++|++ +..+. . ..=.+..+.|+++.|..+..++-.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~-------~s~D~-d----------~rFelal~lgrl~iA~~la~e~~s------------ 665 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE-------LSTDP-D----------QRFELALKLGRLDIAFDLAVEANS------------ 665 (794)
T ss_pred hhhhHHhHhhhccchHhhhh-------cCCCh-h----------hhhhhhhhcCcHHHHHHHHHhhcc------------
Confidence 34456666666666655544 33322 1 123445677888888776665533
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
..-|..||.+....+++..|.+++.++...
T Consensus 666 -~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 666 -EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred -hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 245778889999999999999999888765
No 429
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.85 E-value=27 Score=34.43 Aligned_cols=83 Identities=18% Similarity=0.047 Sum_probs=54.2
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 007930 459 ACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 459 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~ 538 (584)
+..+.|+++.|.++..++-. ..-|..||.+....|++..|.+++.++..+-.-++-......++.+.
T Consensus 646 lal~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhhhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHH
Confidence 45677889888876655432 25688999999999999999999999977644333222222333333
Q ss_pred HHHH-------------HHHHhchHHHHH
Q 007930 539 RLAE-------------LLKETGRARNRK 554 (584)
Q Consensus 539 ~l~~-------------~~~~~g~~~~A~ 554 (584)
.+|. +|...|+++++.
T Consensus 713 ~la~~~~~~g~~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 713 VLASLAKKQGKNNLAFLAYFLSGDYEECL 741 (794)
T ss_pred HHHHHHHhhcccchHHHHHHHcCCHHHHH
Confidence 4443 455556666655
No 430
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=77.69 E-value=55 Score=29.64 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
...-+..-+..++..+ +.+-+.....|+++ +++-+.+|..++.-- .--..+|...++++++..+.
T Consensus 184 ~r~e~eIMQ~AWRERn-p~~RI~~A~~ALeI---------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~--- 248 (556)
T KOG3807|consen 184 LRPEDEIMQKAWRERN-PPARIKAAYQALEI---------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET--- 248 (556)
T ss_pred cChHHHHHHHHHHhcC-cHHHHHHHHHHHhc---------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH---
Confidence 3334445555566666 88889999999986 566677777776532 33466888889988877532
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
.++........|...+|.. ..+..-...+-..|+.|..++|+..+|++.++...+-.
T Consensus 249 ----------~yr~sqq~qh~~~~~da~~-------------rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~ 305 (556)
T KOG3807|consen 249 ----------IYRQSQQCQHQSPQHEAQL-------------RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF 305 (556)
T ss_pred ----------HHhhHHHHhhhccchhhhh-------------hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 2222222233333323221 01122234456678889999999999998887766543
No 431
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.28 E-value=20 Score=24.44 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
+...|.-+-..|++++|+.+|.++++.+...
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 3344455567899999999999999998773
No 432
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=77.23 E-value=23 Score=30.44 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=63.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc-----cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchH
Q 007930 375 AIYEALNEHEEALKLLQKAMKLLEDTPGYHS-----TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFF 449 (584)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 449 (584)
.-.+..|+++.|+++..-+++.....++... .++.-...-+......|+.-+. ++...+......-+-+....
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~--~~~~~~~~l~~~~dmpd~vr 168 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP--YFLRVFLDLTTEWDMPDEVR 168 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHhcCCCChHHH
Confidence 3456789999999999999987655544211 2233333344445555553222 22222222222223234456
Q ss_pred HHHHHHHHHHHH---------hhCCHHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACL---------QLYRINEATELFEEARGV 479 (584)
Q Consensus 450 ~~~~~~l~~~~~---------~~g~~~~A~~~~~~a~~~ 479 (584)
+..+...|..+. ..++...|+.++++|+.+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 677778888774 456888999999999998
No 433
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.04 E-value=12 Score=35.60 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=74.1
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 007930 378 EALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMG 457 (584)
Q Consensus 378 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (584)
...|+...|-.-...++...+..+. .....+.+....|+|+.+...+..+-.+... . ..+...+-
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~-------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s----~----~~~~~~~~ 364 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPV-------LIQLRSVIFSHLGYYEQAYQDISDVEKIIGT----T----DSTLRCRL 364 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCch-------hhHHHHHHHHHhhhHHHHHHHhhchhhhhcC----C----chHHHHHH
Confidence 3457777776666666665544321 2234678888999999998887766554321 1 12344445
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 458 LACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
......|++++|....+-.+.- ..+..++...-+-....+|-++++..++++.+.+
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~--------eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSN--------EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhcc--------ccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 5666778888887766554432 2233344444455555667777888888777766
No 434
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=76.88 E-value=19 Score=24.52 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSL 118 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 118 (584)
+..++..|...-..|+ |++|..+|..+++.+........++..-...
T Consensus 6 A~~l~~~Ave~d~~~~-y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~i 52 (75)
T cd02677 6 AAELIRLALEKEEEGD-YEAAFEFYRAGVDLLLKGVQGDSSPERREAV 52 (75)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 4556777777778888 9999999999999988766555555544433
No 435
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.84 E-value=53 Score=29.09 Aligned_cols=140 Identities=18% Similarity=0.094 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcC-CC---chhHHHHHHHHHH-HHHHhcCChhhHHHHHHHHHHHHH
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSG-SG---QELELVMSLHMLA-AIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~-~~---~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
..+-..|..+.-..+ |..|++.++++++....... +. ...+.--++..+| .++..++++.+++.+.-+-.+.-+
T Consensus 36 ~lLe~Aad~LvV~rd-F~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pE 114 (309)
T PF07163_consen 36 SLLEEAADLLVVHRD-FQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPE 114 (309)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 344445555555666 99999999999998744221 11 1123333344444 456678999998888766554432
Q ss_pred hccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHhCCHHHHHHHH
Q 007930 147 IGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV-AETCRYLAEAHIQAMQFDEAENLC 223 (584)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~ 223 (584)
+. |. .++-.-...|.+.+++....+.-..-+..-. +..-|+. .-+-..+-.++.-.|.+++|.++.
T Consensus 115 kl-----Pp---kIleLCILLysKv~Ep~amlev~~~WL~~p~---Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 115 KL-----PP---KILELCILLYSKVQEPAAMLEVASAWLQDPS---NQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred cC-----CH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc---cCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 21 11 2233344567888998888777666655410 0111221 112223444556679999999887
No 436
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.83 E-value=95 Score=31.98 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCChHHHHHHH
Q 007930 75 LKLARETISSGDNPNKALDYA 95 (584)
Q Consensus 75 ~~~a~~~~~~g~~~~~A~~~~ 95 (584)
..+..++++.|. +++|.++.
T Consensus 115 Wa~Iyy~LR~G~-~~~A~~~~ 134 (613)
T PF04097_consen 115 WALIYYCLRCGD-YDEALEVA 134 (613)
T ss_dssp HHHHHHHHTTT--HHHHHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHH
Confidence 345567889999 99999988
No 437
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.76 E-value=1e+02 Score=32.20 Aligned_cols=49 Identities=16% Similarity=0.029 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 95 AIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 95 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
|.-|+.+.+... .+......++...|..++..|++++|...|-+.+...
T Consensus 350 y~~Ai~LAk~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 345555555443 2334567778888999999999999999998887553
No 438
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=75.90 E-value=13 Score=32.66 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
....++=..+...++++.|..+.++.+.+ +|+++.-..--|.+|.++|-+.-|. ..++-.++.-|+....+
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl-~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVAL-EDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhH-HHHHHHHHhCCCchHHH
Confidence 44556667788899999999999999998 8888888899999999999999999 89999888888877766
Q ss_pred HHh
Q 007930 573 VTK 575 (584)
Q Consensus 573 ~~~ 575 (584)
.++
T Consensus 253 ~ir 255 (269)
T COG2912 253 MIR 255 (269)
T ss_pred HHH
Confidence 443
No 439
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=75.61 E-value=7.8 Score=36.53 Aligned_cols=135 Identities=18% Similarity=0.146 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHhcc----CCchhhhHHHHHHHHHHHHHhcCChHHHH--------HH
Q 007930 114 LVMSLHMLAAIYCSLG-RFEEAVPVLERSIEVVDIGK----GSDRALAKFSGYMQLGDTCSSMGLLDRSV--------WC 180 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--------~~ 180 (584)
..+++..+|..|.... +.-.|..++.++++...... ....... .++.-|...-+..+-. ..
T Consensus 244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p------~~ay~~~re~~~~~elE~lv~D~d~~ 317 (615)
T KOG0508|consen 244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEP------VLAYGYGREVNNREELEELVEDPDEM 317 (615)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCc------hhhhhhhhhcCCHHHHHHHhcChHHH
Confidence 4566777777776533 56678888888887764310 0111100 1111111111111111 12
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007930 181 YESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA 254 (584)
Q Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~ 254 (584)
--+++-+.++++|+.+|+........|-+|...|+++..++++.-++.+..++..+-++..+..+...+.++..
T Consensus 318 RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 318 RMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 23566677888899998887777778889999999999999999999999999888778777777777766554
No 440
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.47 E-value=1.3e+02 Score=32.84 Aligned_cols=202 Identities=14% Similarity=0.066 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH------HHhcC----HHHHHHHHHH
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIY------EALNE----HEEALKLLQK 392 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~----~~~A~~~~~~ 392 (584)
.....+.+|.+|...|+..+|+.+|.+|..-..+ . .++..+..-. ...|+ ...|..||.+
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge-----~-----~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlk 988 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGE-----G-----NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLK 988 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhcccc-----H-----HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHH
Confidence 4456677899999999999999999999876422 1 1222221110 02232 1235667777
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHH
Q 007930 393 AMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATEL 472 (584)
Q Consensus 393 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 472 (584)
++++.+.. +-.+.+.....+|++ ..++ ..+..+.....+-.-+...|.+-+|...
T Consensus 989 v~rlle~h---------------------n~~E~vcQlA~~AIe---~l~d-d~ps~a~~~t~vFnhhldlgh~~qAy~a 1043 (1480)
T KOG4521|consen 989 VVRLLEEH---------------------NHAEEVCQLAVKAIE---NLPD-DNPSVALISTTVFNHHLDLGHWFQAYKA 1043 (1480)
T ss_pred HHHHHHHh---------------------ccHHHHHHHHHHHHH---hCCC-cchhHHHHHHHHHHhhhchhhHHHHHHH
Confidence 66665543 333444444444444 3333 3355666677777777778888777654
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHH-----HHHHHHH-HHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 473 FEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIE-----ILEYILK-VREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 473 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~a~~-~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
+-+- ++.......+..+-.++...|..+.=.+ +-++... +.++.-..........+..|-..+..
T Consensus 1044 i~~n---------pdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~ 1114 (1480)
T KOG4521|consen 1044 ILRN---------PDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVA 1114 (1480)
T ss_pred HHcC---------CcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Confidence 4321 2222234567777778888777643211 1122222 22221112222233445555566778
Q ss_pred hchHHHHHHHHHHHHHhhhhhh
Q 007930 547 TGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 547 ~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
.+++.+|...+++-+.....+.
T Consensus 1115 RhN~RkaatvMYEyamrl~se~ 1136 (1480)
T KOG4521|consen 1115 RHNFRKAATVMYEYAMRLESET 1136 (1480)
T ss_pred hcchhHHHHHHHHHHHHhcccc
Confidence 8999999888888776554443
No 441
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=75.40 E-value=5.7 Score=20.78 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
+|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 466778899999999999999988765
No 442
>PF13041 PPR_2: PPR repeat family
Probab=73.98 E-value=15 Score=22.26 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++..+-..|.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 57888899999999999999999998864
No 443
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=72.01 E-value=1.3e+02 Score=31.36 Aligned_cols=152 Identities=11% Similarity=-0.008 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
++.....+..|..++...|++++-...-.++.++.+-.. .....|..--......++-.++...|++++.-....
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~-----~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v 183 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP-----HLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSV 183 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccc
Confidence 455566777788888899998887766666666655332 111111111112223367778888888886533322
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 353 (584)
.............+..+...++++.-...|.+++......... .......+..+-..|...-..++-+.++...+..
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~-G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITE-GAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 2233344444444555566788888999999988764333211 1233444555555555555455566666655544
No 444
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=71.97 E-value=1.1e+02 Score=30.46 Aligned_cols=114 Identities=15% Similarity=-0.005 Sum_probs=78.9
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH-HHHHHHHHhCCCCCchH
Q 007930 414 MGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEE-ARGVLEQECGSCHLDTL 492 (584)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-a~~~~~~~~~~~~~~~~ 492 (584)
+...+...++...+.-.+..++.. .+..+.+..+++......|....+...+.+ +... .|...
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~--------~~~~~ 136 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL--------SPDNA 136 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--------CcchH
Confidence 566667777777777777776663 444567888888888777776666655555 5544 44544
Q ss_pred HHHHH------HHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHH
Q 007930 493 GVYSN------LAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRAR 551 (584)
Q Consensus 493 ~~~~~------la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (584)
..... ++.....+|+..++....+++.++ .|...+....+.....++-.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~--------~p~~~~~~~~~~~~r~~~cs~~ 193 (620)
T COG3914 137 EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL--------LPKYPRVLGALMTARQEQCSWP 193 (620)
T ss_pred HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------hhhhhhhHhHHHHHHHHhccch
Confidence 44444 488888889999999999999988 5666666666666655555544
No 445
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=71.91 E-value=36 Score=27.29 Aligned_cols=111 Identities=14% Similarity=0.024 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcC------------------------------CCchhHHHHHHHHHHH
Q 007930 74 LLKLARETISSGDNPNKALDYAIRASKSFERFSG------------------------------SGQELELVMSLHMLAA 123 (584)
Q Consensus 74 l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~------------------------------~~~~~~~~~~~~~l~~ 123 (584)
....|+..+..|+ .++|...+.+|...+..... ..............+.
T Consensus 5 ~i~~Ar~aL~~g~-~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 5 DIQKARLALFQGD-TDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHCTT--HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 4567888899999 99999999999987764321 0001234455667788
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007930 124 IYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLE 186 (584)
Q Consensus 124 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 186 (584)
-.+..|+.+.|.+.++.+-.-.. .....-|..........+..+...|++.+|...+..+++
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~-~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEID-ITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEE-EEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccce-eeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 89999999999998876532110 000112333334566788889999999999998888764
No 446
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=71.09 E-value=10 Score=20.40 Aligned_cols=27 Identities=33% Similarity=0.581 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 494 VYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 494 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
++..+-..|.+.|++++|.+.|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356777889999999999999998765
No 447
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.42 E-value=33 Score=23.42 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
+...|.-+-..|+|++|+.+|..+++.+...
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 3344445556799999999999999998663
No 448
>PRK09169 hypothetical protein; Validated
Probab=68.91 E-value=2.6e+02 Score=33.52 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=7.3
Q ss_pred HHHHHHHHHhchHHH
Q 007930 538 ERLAELLKETGRARN 552 (584)
Q Consensus 538 ~~l~~~~~~~g~~~~ 552 (584)
..+++++..+.+|-+
T Consensus 709 q~lAn~LnAlsKwp~ 723 (2316)
T PRK09169 709 QGVANALNALSKWPE 723 (2316)
T ss_pred HHHHHHHHHHHhccC
Confidence 344555555554443
No 449
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=68.35 E-value=15 Score=19.68 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 494 VYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 494 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
++..+..++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888899999999999999988765
No 450
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=68.02 E-value=36 Score=23.32 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHH
Q 007930 496 SNLAATYDALGRVEDAIEILEYILKVREEKLG-TANPDIDDEK 537 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~p~~~~~~ 537 (584)
...|.-.-..|++++|+.+|.++++.+...+. ..+|.....+
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~ 52 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNL 52 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 33444555789999999999999999888653 3344443333
No 451
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.57 E-value=51 Score=25.40 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=35.1
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 461 LQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 461 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
..+|+-++-.+.+....+- ....+..+..+|.+|.+.|+..+|.+++++|.+-
T Consensus 97 v~~~kkDqLdki~~~l~kn--------~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKN--------EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHhhc--------cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3456655555555444322 3345688999999999999999999999999873
No 452
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=65.70 E-value=1.5e+02 Score=29.51 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 424 YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 424 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
-..++.+|.+++...+......+. .-|..+|-.+++.+++.+|+..+-+|-...+.
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999988888765443 45677888999999999999999998777543
No 453
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.40 E-value=1.7e+02 Score=30.18 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=15.1
Q ss_pred HHHHHHhcCChhhHHHHHHH
Q 007930 121 LAAIYCSLGRFEEAVPVLER 140 (584)
Q Consensus 121 l~~~~~~~g~~~~A~~~~~~ 140 (584)
...++.-.|+|+.|+.++-+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 34566778999999999877
No 454
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=63.73 E-value=14 Score=29.53 Aligned_cols=109 Identities=16% Similarity=0.029 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-------CC---------C--------------C--cccHHHHHHHHHHH
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLED-------TP---------G--------------Y--HSTIAGIEAQMGVM 417 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-------~~---------~--------------~--~~~~~~~~~~l~~~ 417 (584)
....+......|+.++|...+.++...... .. + . ...........+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 345677778889999999999888766532 11 0 0 01122344566777
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 418 LYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 418 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
..+.|+...|.+.++.+-.-..-....-+-.........+..+...|++.+|...+..++.
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8889999988887776532100000000111234455678888899999999999998875
No 455
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=63.71 E-value=2.7e+02 Score=31.76 Aligned_cols=230 Identities=13% Similarity=-0.028 Sum_probs=129.0
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcC-------------------
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLG------------------- 129 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------- 129 (584)
..++....+|..++..|. +.+|+..|.+|+...+... +..-.+.++-.++.+..-.+
T Consensus 240 ~~gR~~k~~gd~~LlaG~-~~dAl~~y~~a~~~~k~~~---D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~ 315 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGR-WPDALKEYTEAIEILKSSN---DYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPIS 315 (1185)
T ss_pred hhhhhhhhhhhHHHHcCC-HHHHHHHHHHHHHHHhhcC---cHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCC
Confidence 456677889999999999 9999999999999988765 34444555554443332110
Q ss_pred --------------------------------------------ChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHH
Q 007930 130 --------------------------------------------RFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLG 165 (584)
Q Consensus 130 --------------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~ 165 (584)
.+++|+.+|.++..... ....+....++....+
T Consensus 316 ~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~---~~~p~lv~~E~~lr~~ 392 (1185)
T PF08626_consen 316 SSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTS---EYVPQLVYSEACLRFA 392 (1185)
T ss_pred CccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccc---ccCcchHHHHHHHHHH
Confidence 12344444444432211 1122233345666777
Q ss_pred HHHHhcC--------------------ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 166 DTCSSMG--------------------LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 166 ~~~~~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
..+.... .-.++..+..+++......+ +..+....+..+|.+|...|-..+..-+.+.
T Consensus 393 ~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~ 470 (1185)
T PF08626_consen 393 RFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRE 470 (1185)
T ss_pred HHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 7766666 67778888888887654322 2345678999999999999988888777777
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHcCChhHHHHH
Q 007930 226 ILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG-QENEVAAIDVSIGNIYMSLCRFDEAIFS 304 (584)
Q Consensus 226 al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~ 304 (584)
++...-.............+..+...|.-..+.+.-...-. ....+ -......++..+-.+....||+..+..+
T Consensus 471 l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~-----~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~ 545 (1185)
T PF08626_consen 471 LAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSS-----KGSQSNWPSLQIDVLKECINIAEALGDFAGVLRF 545 (1185)
T ss_pred HHHHhccccCCcchHHHHHHHHHhccCcccCCccccccccc-----cccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 77655321110011111112222222222111110000000 00000 1112344555566666778888888877
Q ss_pred HHHHHHHH
Q 007930 305 YQKGLTVF 312 (584)
Q Consensus 305 ~~~al~~~ 312 (584)
....+..+
T Consensus 546 ~~~LL~~~ 553 (1185)
T PF08626_consen 546 SSLLLRTY 553 (1185)
T ss_pred HHHHHHHH
Confidence 77666654
No 456
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=63.20 E-value=45 Score=22.71 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=23.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 499 AATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
|.-+...|++++|+.+|.++++.+.....
T Consensus 15 Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~ 43 (77)
T smart00745 15 ALKADEAGDYEEALELYKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 34445589999999999999999888654
No 457
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.68 E-value=1.3e+02 Score=27.70 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.+-+..|..+...|++.++..++.++.-+
T Consensus 214 Yv~Yl~~lf~a~n~dv~kg~~~~~e~~gi 242 (449)
T COG3014 214 YVSYLSGLFYALNGDVNKGLGYLNEAYGI 242 (449)
T ss_pred HHHHHHHHhcccCccHhHHHHHHHHHhcc
Confidence 44455566666777888888888777766
No 458
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.98 E-value=20 Score=18.80 Aligned_cols=30 Identities=30% Similarity=0.302 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 007930 506 GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAEL 543 (584)
Q Consensus 506 g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~ 543 (584)
|+.+.|...|++++.. .|.....+...+..
T Consensus 1 ~~~~~~r~i~e~~l~~--------~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEK--------FPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHH--------CCCChHHHHHHHHH
Confidence 5678899999999987 56666666655443
No 459
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=61.60 E-value=51 Score=22.75 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
+...|..+-..|+.++|+.+|++++........
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 334444445568888888899888888766533
No 460
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=61.15 E-value=1.3e+02 Score=27.34 Aligned_cols=75 Identities=21% Similarity=0.139 Sum_probs=51.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007930 67 NPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVD 146 (584)
Q Consensus 67 ~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 146 (584)
.|+..+.++..|...+.-|+ |..|-.++-....+. .+++++...++...-..-.-..+++-|++-+.+.-+...
T Consensus 125 ~~e~i~~lykyakfqyeCGN-Y~gAs~yLY~~r~l~-----~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ID 198 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGN-YSGASDYLYFYRALV-----SDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYID 198 (432)
T ss_pred CHHHHHHHHHHHHHHHhccC-cccHHHHHHHHHHhc-----CCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 56778899999999999999 999888765544432 233443444443333334456789999998888777664
Q ss_pred h
Q 007930 147 I 147 (584)
Q Consensus 147 ~ 147 (584)
.
T Consensus 199 s 199 (432)
T KOG2758|consen 199 S 199 (432)
T ss_pred c
Confidence 3
No 461
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=60.51 E-value=1.3e+02 Score=27.27 Aligned_cols=79 Identities=4% Similarity=-0.198 Sum_probs=55.9
Q ss_pred HcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 007930 274 ANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353 (584)
Q Consensus 274 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 353 (584)
..+-.++...+++..+...+..|+|..|-.++-....+. .+..+....++.+.-..-....+++.|.+-+.+.-+.
T Consensus 121 ~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~----~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 121 HYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALV----SDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc----CCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445678889999999999999999999998876554442 2223434444443333444567899999999888777
Q ss_pred Hhc
Q 007930 354 CAK 356 (584)
Q Consensus 354 ~~~ 356 (584)
...
T Consensus 197 IDs 199 (432)
T KOG2758|consen 197 IDS 199 (432)
T ss_pred Hcc
Confidence 654
No 462
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=60.11 E-value=52 Score=22.37 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=27.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKVREEKLG-TANPDIDDEKE 538 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~p~~~~~~~ 538 (584)
|.-.-..|++++|+.+|.++++.+..... ..+|.....+.
T Consensus 13 Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~ 53 (75)
T cd02678 13 AIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIR 53 (75)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 34445689999999999999999877653 33454444433
No 463
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.46 E-value=58 Score=30.06 Aligned_cols=110 Identities=13% Similarity=0.184 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..+..++......+. +...+....+|+..+..... .....+-.+-.+....++|.-+..++.--+.-.....+.
T Consensus 103 ~lc~~l~~~~~~~~~-p~~gi~ii~~av~k~~~~~~-----qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h 176 (422)
T KOG2582|consen 103 PLCHDLTEAVVKKNK-PLRGIRIIMQAVDKMQPSNG-----QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPH 176 (422)
T ss_pred HHHHHHHHHHHhcCC-ccccchHHHHHHHHhccCcc-----chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCC
Confidence 345666666676666 77778888888876553321 223344455566677788877777665544332222334
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEI 187 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 187 (584)
.++...+..++.=|.++...++++.|+.+|+.++..
T Consensus 177 ~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 177 LDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred CCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 445444445566678888999999999999999876
No 464
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.48 E-value=56 Score=22.26 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFER 104 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~ 104 (584)
+..++..|...=..|+ |++|+.+|..|++.|-.
T Consensus 6 ai~Lv~~A~~eD~~gn-y~eA~~lY~~ale~~~~ 38 (75)
T cd02680 6 AHFLVTQAFDEDEKGN-AEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHhhHhhh-HHHHHHHHHHHHHHHHH
Confidence 3445666666667788 99999999999999876
No 465
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=58.38 E-value=62 Score=25.46 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+.....+.-....|++.-|.++...++.. +|++..+....+.++.++|.-.+..
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~a--------dp~n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFA--------DPDNEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHHHhccCH
Confidence 45567777788899999999999999997 8999999999999999999876653
No 466
>PRK12798 chemotaxis protein; Reviewed
Probab=57.45 E-value=1.8e+02 Score=27.78 Aligned_cols=165 Identities=15% Similarity=0.031 Sum_probs=75.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH
Q 007930 122 AAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLG-DTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA 200 (584)
Q Consensus 122 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (584)
|..-+-.|+-.++.+.+...-... ..+ .+..+..|. -......+..+|+.+|..+-=+. |...
T Consensus 119 g~laY~~Gr~~~a~~~La~i~~~~------l~~--~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLla--------PGTL 182 (421)
T PRK12798 119 GALAYLSGRGREARKLLAGVAPEY------LPA--ELGAYLALVQGNLMVATDPATALKLLDQARLLA--------PGTL 182 (421)
T ss_pred HHHHHHcCCHHHHHHHhhcCChhh------cCc--hhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhC--------CchH
Confidence 444455677777776666543221 000 111122222 22334456677777777665542 2211
Q ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 201 ---ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 201 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
.++..--.+....|+.++...+-.+.+..+..... ....+..+.......++-..- +.+...+. .-+
T Consensus 183 vEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~Y-----A~~F~~~F~~~~~~~~d~~~~-~~l~~~ls----~~d 252 (421)
T PRK12798 183 VEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPY-----ASQFAQRFVDLVVRLDDEIRD-ARLVEILS----FMD 252 (421)
T ss_pred HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCch-----HHHHHHHHHHHHHhccccccH-HHHHHHHH----hcC
Confidence 13333334445666666666666666655543332 122222222222222211110 11221111 113
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVF 312 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 312 (584)
......+|..++..-...|+.+-|...-.+++.+.
T Consensus 253 ~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 253 PERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred chhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 34445566666666666666666666666666665
No 467
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=57.44 E-value=3e+02 Score=30.39 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=32.3
Q ss_pred HHHHHHcccHHHHHHHHHHH------HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 007930 331 ADLYYRIGKLRESKSYCENA------LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAM 394 (584)
Q Consensus 331 a~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 394 (584)
|..|...|+.++|++.|+.+ +.+..+. ..........-..|+.-+..++++-+|-+...+.+
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql--~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWREALSLAAQL--SEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 45566666666666666544 3333221 11122223333556666667777777766655544
No 468
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.13 E-value=3.2e+02 Score=30.21 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHH------------------hhcCC-cccH--HHHHHHHHHHHHHcccHHH
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKA------------------TRGED-HLSV--ASIFIRLADLYYRIGKLRE 342 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~-~~~~--~~~~~~la~~~~~~g~~~~ 342 (584)
....+|.+|...|...+|+.+|.+|..-..+ ..|.. .+.. ...|...-+++...+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 3466788888999999999999988753211 00111 1111 2333444455556666677
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 007930 343 SKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG 422 (584)
Q Consensus 343 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 422 (584)
+.....+|++.. +++.+..+..+..+-.-+...|.+-+|...+-+ .+. ....-.++..+-.+++..|
T Consensus 1002 vcQlA~~AIe~l-----~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-------npd-serrrdcLRqlvivLfecg 1068 (1480)
T KOG4521|consen 1002 VCQLAVKAIENL-----PDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-------NPD-SERRRDCLRQLVIVLFECG 1068 (1480)
T ss_pred HHHHHHHHHHhC-----CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-------CCc-HHHHHHHHHHHHHHHHhcc
Confidence 777777777665 556677777888888888888888777654432 111 2222345566777777777
Q ss_pred cHHHHHH-----HHHHHHH-HHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHH
Q 007930 423 RYGEARS-----SFESAVV-KLRASGESKSAFFGIVLNQMGLACLQLYRINEATE-LFEEARGV 479 (584)
Q Consensus 423 ~~~~A~~-----~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~ 479 (584)
+++.-.+ .-++... +........+......|..|--.+...+++.+|-. +|+.+..+
T Consensus 1069 ~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1069 ELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred chHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 7653221 1122222 11111111111122344455556777888887654 56666665
No 469
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.50 E-value=1.8e+02 Score=30.01 Aligned_cols=181 Identities=9% Similarity=-0.018 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH---HcccHHHHHHHHHHHHHHHhc
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYY---RIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~ 356 (584)
....+-.++-..|....+|+.-+++.+..-.+-.... ......+.+..+.++- +-|+-++|+...-.+++.-
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~---vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e-- 273 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLK---VVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE-- 273 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhh---hhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc--
Confidence 3456667777888888999887777665444310000 0001111112233332 3467777877776666643
Q ss_pred CCCCCChHHHHHHHHHHHHHHHH---------hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc-HHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEA---------LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGR-YGE 426 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 426 (584)
+...+ ..++.-|.+|.. .+..+.|+++|+++.+..+.... -.+++.++...|+ ++.
T Consensus 274 ---g~vap---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s--------GIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 274 ---GPVAP---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS--------GINLATLLRAAGEHFEN 339 (1226)
T ss_pred ---CCCCC---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc--------cccHHHHHHHhhhhccc
Confidence 22222 344555666543 35667899999999887665421 1255666666653 344
Q ss_pred HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHHH
Q 007930 427 ARSSFESAVVKLRASGESKSAFFGIVLNQMGLACL---QLYRINEATELFEEARGV 479 (584)
Q Consensus 427 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~ 479 (584)
..++-.-...+-.-++..........|...|..+. ..+++.+|+...+...++
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 44443333333222232222222233333333222 346788887777776666
No 470
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=54.66 E-value=65 Score=21.82 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=23.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 498 LAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 498 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
.|.-.-..|++++|+.+|..+++.+.....
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~ 41 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALDYLLQALK 41 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 334445669999999999999999888664
No 471
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.14 E-value=1.6e+02 Score=26.29 Aligned_cols=138 Identities=14% Similarity=0.071 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHhC
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDP-----RVAETCRYLA-EAHIQAMQFDEAENLCKKILEIHREHG 234 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (584)
+-.-+....-..+|..|++.++++++.....-....+ +.-..+..+| .++..++++.+++.+.-+-.+.-++.+
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3444556666788999999999998875321111111 1122222333 457788999999888766655443333
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHHcCChhHHHHHHH
Q 007930 235 HSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE-VAAIDVSIGNIYMSLCRFDEAIFSYQ 306 (584)
Q Consensus 235 ~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 306 (584)
+.++..-...|.+.+++....+.-..-+..-. +...++ -.-+-..+-.++.=.|.+++|+++..
T Consensus 118 -------pkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 118 -------PKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred -------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 23455566778889998888776654332110 111111 12222334455567899999998873
No 472
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=53.20 E-value=70 Score=21.80 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.8
Q ss_pred HhcCChhhHHHHHHHHHHHHHh
Q 007930 126 CSLGRFEEAVPVLERSIEVVDI 147 (584)
Q Consensus 126 ~~~g~~~~A~~~~~~al~~~~~ 147 (584)
-..|+|++|+.+|..+++.+..
T Consensus 17 D~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHHHH
Confidence 3578999999999999998755
No 473
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=53.00 E-value=23 Score=30.69 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 007930 256 ADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFK 313 (584)
Q Consensus 256 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 313 (584)
-....|.+++..|+...+..++...+..+....+..|+...+|+.|..+|..|..++.
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~ 110 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYV 110 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999888888888899999999999999999999998854
No 474
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.80 E-value=74 Score=21.96 Aligned_cols=29 Identities=24% Similarity=0.207 Sum_probs=23.3
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 007930 502 YDALGRVEDAIEILEYILKVREEKLGTAN 530 (584)
Q Consensus 502 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 530 (584)
+...|+.++|+.+|++++....+.+.-..
T Consensus 18 ~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 18 ADEWGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34458999999999999999888777444
No 475
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.97 E-value=2e+02 Score=26.57 Aligned_cols=94 Identities=14% Similarity=0.027 Sum_probs=51.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
.-|.+++..++|.+....+..+-...+...+...... ..-...|.....-+ ...++...-+.
T Consensus 63 ~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~--~~A~~vGst~vNDN----------------i~~Y~g~~YE~ 124 (449)
T COG3014 63 QNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSAST--RGAGYVGATMINDN----------------VRAYGGNIYEG 124 (449)
T ss_pred hhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheecc--ccccchhhhhhccc----------------hhhcCchhHHH
Confidence 4588888888988888877766554432221111111 01111222221110 00011112334
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHR 231 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 231 (584)
....+.+|.-|+...+++.|.--+.++....+
T Consensus 125 ~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~ 156 (449)
T COG3014 125 VLINYYKALNYMLLNDSAKARVEFNRANERQR 156 (449)
T ss_pred HHHHHHHHhhHHHhcchhhhHHHHHHHHHHHH
Confidence 45666778888999999999988888876543
No 476
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=51.61 E-value=31 Score=18.73 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHc----CChHHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDAL----GRVEDAIEILEYILKV 521 (584)
Q Consensus 493 ~~~~~la~~~~~~----g~~~~A~~~~~~a~~~ 521 (584)
.+.+.||.+|..- .+..+|..+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 3567788887642 3788999999988763
No 477
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.28 E-value=1.9e+02 Score=25.90 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHHH
Q 007930 496 SNLAATYDALGRVEDAIEIL-EYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEVT 574 (584)
Q Consensus 496 ~~la~~~~~~g~~~~A~~~~-~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~ 574 (584)
.+++.+....+.-+..+..+ +.+++ +...+|...-..+..+..+|..+..-+++.+|...+ ++..+++......+
T Consensus 89 anl~~ll~e~~~~eper~~~v~raik-WS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HF---ll~~d~s~~a~~ll 164 (312)
T KOG3024|consen 89 ANLAELLGEADPSEPERKTFVRRAIK-WSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHF---LLSEDGSKFAYMLL 164 (312)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHH-HHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHh---hhcCChHHHHHHHH
Confidence 34555555555554444444 44444 444443333445677888999999999998887322 23333333333455
Q ss_pred hHhhcCCCC
Q 007930 575 KRRSGFGFR 583 (584)
Q Consensus 575 ~~~~~~~~~ 583 (584)
.-|...||+
T Consensus 165 ~y~~~r~f~ 173 (312)
T KOG3024|consen 165 EYSMSRGFK 173 (312)
T ss_pred HHHhhcccc
Confidence 666666554
No 478
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=48.84 E-value=42 Score=30.76 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC------------cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 372 EISAIYEALNEHEEALKLLQKAMKLLEDTPGY------------HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 372 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
..+.-....++++.|..-+.+++......... ......+..+++.+-...+.+..|+..-..++.
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--- 303 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR--- 303 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc---
Confidence 44556777888888888888877665421110 111233455677788888888888777666655
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 501 (584)
.......+++..+..+....++++|++.++.+... .|....+...+..+
T Consensus 304 -----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~--------~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 304 -----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK--------APNDKAIEEELENV 352 (372)
T ss_pred -----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc--------CcchHHHHHHHHHh
Confidence 22334568899999999999999999999999887 66665554444443
No 479
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.64 E-value=98 Score=27.05 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=14.5
Q ss_pred HHHcCCChHHHHHHHHHHHHHHH
Q 007930 81 TISSGDNPNKALDYAIRASKSFE 103 (584)
Q Consensus 81 ~~~~g~~~~~A~~~~~~al~~~~ 103 (584)
.+.-.+ ...|++.+++||+++.
T Consensus 313 Al~yed-VstavenL~KaL~lLt 334 (338)
T KOG0917|consen 313 ALQYED-VSTAVENLQKALKLLT 334 (338)
T ss_pred hcchHH-HHHHHHHHHHHHHHhh
Confidence 333344 5678888888887754
No 480
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=47.98 E-value=68 Score=26.62 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=39.8
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDI 533 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~ 533 (584)
..|.....+.++..-|...|+++.|....+++++-..+..|.+||+.
T Consensus 135 E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 135 EIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 46677789999999999999999999999999999999999988863
No 481
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.67 E-value=2.7e+02 Score=26.44 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=39.2
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH--HHHHHhhCCHHHHHHHHH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM--GLACLQLYRINEATELFE 474 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~ 474 (584)
..+..++..++|..|...|+++.... +.+. .......+..+ |..++..-++++|.++++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~--l~~~-~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRL--LSAV-NHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc--cChh-hhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 45567788999999999999988641 1111 11123344444 444556789999999998
No 482
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=45.32 E-value=89 Score=29.41 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV-----EDAIEILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 469 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-----~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
|..+.++|++.+++....+.| .+|..+|.++..+|+. .+=..+|++|-.+..+.....|......+-+|
T Consensus 330 a~~l~~~Al~yL~kA~d~ddP---etWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diLdnL 403 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQDEDDP---ETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDILDNL 403 (404)
T ss_dssp HHHHHHHHHHHHHHHHHS--T---THHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCh---hHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHHhhc
Confidence 444444444444444334445 4677777777776653 22456777777776665555555555554443
No 483
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=44.80 E-value=1.5e+02 Score=23.08 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=33.8
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
..+|+-++-.+.+..... +....+..+..+|.+|.+.|+..+|-+++.+|-+-
T Consensus 97 v~~~kkDqLdki~~~l~k--------n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKK--------NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHhh--------ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445555544444444332 12234678899999999999999999999998764
No 484
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=44.27 E-value=56 Score=18.11 Aligned_cols=28 Identities=21% Similarity=0.081 Sum_probs=18.5
Q ss_pred HHHHHHH--HHHHHcC-----ChHHHHHHHHHHHH
Q 007930 493 GVYSNLA--ATYDALG-----RVEDAIEILEYILK 520 (584)
Q Consensus 493 ~~~~~la--~~~~~~g-----~~~~A~~~~~~a~~ 520 (584)
.+.+.|| .+|..-. +.++|..+|+++.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4567777 4444332 46788888888876
No 485
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.12 E-value=1.2e+02 Score=28.77 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQ-ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
++..|-+++.-+|+++.-. +.+++..+ +.+ ..|.. .+-+..|.+|..+|++.+|+..|-.++-..++
T Consensus 237 sL~GLlR~H~lLgDhQat~----q~idi~pk~iy~-t~p~c-~VTY~VGFayLmmrryadai~~F~niLlyIqr 304 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATS----QILDIMPKEIYG-TEPMC-RVTYQVGFAYLMMRRYADAIRVFLNILLYIQR 304 (525)
T ss_pred HHHHHHHHHHHhhhhHhhh----hhhhcCchhhcC-cccce-eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677778855522 23333221 222 12222 33388999999999999999999988865433
No 486
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.08 E-value=3.3e+02 Score=26.92 Aligned_cols=212 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 007930 269 SMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348 (584)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 348 (584)
+.-+......+..-..+..+-.++...-++.-....+.+.+.+ ...-.++..++.+|... ..++-....+
T Consensus 53 isg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWe 122 (711)
T COG1747 53 ISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWE 122 (711)
T ss_pred HHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHH
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc--HHH
Q 007930 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGR--YGE 426 (584)
Q Consensus 349 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~ 426 (584)
+..+.. .+....-..|+..|.. ++-..+..+|.+++...-.. .-...+-.++.+.-. -++
T Consensus 123 r~ve~d---------fnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~--------~q~~~i~evWeKL~~~i~dD 184 (711)
T COG1747 123 RLVEYD---------FNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPR--------RQNAAIKEVWEKLPELIGDD 184 (711)
T ss_pred HHHHhc---------chhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcch--------hhhhhHHHHHHHHHHhcccc
Q ss_pred HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--
Q 007930 427 ARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA-- 504 (584)
Q Consensus 427 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 504 (584)
-...+....++....+... ...++..+-.-|....++++|+..+...++. +.....+..++..-+..
T Consensus 185 ~D~fl~l~~kiqt~lg~~~---~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~--------d~k~~~ar~~~i~~lRd~y 253 (711)
T COG1747 185 KDFFLRLQKKIQTKLGEGR---GSVLMQDVYKKYSENENWTEAIRILKHILEH--------DEKDVWARKEIIENLRDKY 253 (711)
T ss_pred HHHHHHHHHHHHHhhccch---HHHHHHHHHHHhccccCHHHHHHHHHHHhhh--------cchhhhHHHHHHHHHHHHh
Q ss_pred ------------------cCChHHHHHHHHHHH
Q 007930 505 ------------------LGRVEDAIEILEYIL 519 (584)
Q Consensus 505 ------------------~g~~~~A~~~~~~a~ 519 (584)
-.++.+++.-|++.+
T Consensus 254 ~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 254 RGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccchhHHHHHHhcchhhccccHHHHHHHHHHHh
No 487
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=43.68 E-value=1e+02 Score=20.98 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=28.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHH
Q 007930 500 ATYDALGRVEDAIEILEYILKVREEKLG-TANPDIDDEKER 539 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~p~~~~~~~~ 539 (584)
.-.-..|++++|+.+|..+++.+..... ..+|.....+..
T Consensus 14 v~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~ 54 (75)
T cd02684 14 VKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQ 54 (75)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3344679999999999999999887653 445555444433
No 488
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.55 E-value=4.6e+02 Score=28.37 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=87.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHhcCC---C
Q 007930 285 DVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL--RESKSYCENALRVCAKPA---P 359 (584)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~---~ 359 (584)
+..|+.+|...|++++|++.+.+..+-... .+......+-.+-..+...+.. +-..++-.-.+....... .
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~----~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSD----TDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccc----cccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 566788888888888888888876653210 0122222333333333333332 333333222222111100 0
Q ss_pred CCChHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHHH-HHHHhccHHHHHHH--HHHH
Q 007930 360 ATAPEEIANGL-TEISAIYEALNEHEEALKLLQKAMKLLEDTPG-YHSTIAGIEAQMGV-MLYVVGRYGEARSS--FESA 434 (584)
Q Consensus 360 ~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~-~~~~~g~~~~A~~~--~~~a 434 (584)
.......+... ...-.-|......+-++.|++.++........ -+..+...|..... .-...++-+++.+. .++.
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl 662 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKL 662 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHH
Confidence 00001001111 11112245666777888999888876544311 11111111111111 11112233355555 3444
Q ss_pred HHHHHHcCCCCCc-------hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 435 VVKLRASGESKSA-------FFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 435 ~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
....+... ...+ .....+...+.++.+.|+.++|+..|-..+.
T Consensus 663 ~~~l~~s~-~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 663 LDFLESSD-LYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHhhhhc-ccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33332221 1111 1134567778888899999999998876655
No 489
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.56 E-value=2.7e+02 Score=29.89 Aligned_cols=96 Identities=15% Similarity=-0.008 Sum_probs=49.6
Q ss_pred cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHH
Q 007930 381 NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLAC 460 (584)
Q Consensus 381 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (584)
|++..|+-.+..++-.....+........-...-+..+...|....|...|.+++..++...-.. .....++.++..|
T Consensus 289 ~dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~--~edh~~f~i~~~y 366 (960)
T KOG1938|consen 289 GDLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSF--AEDHLYFTILHVY 366 (960)
T ss_pred chhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcch--hHHhHHHhHHHhh
Confidence 44555555555555544222222221111112335566777788999999999998765432211 1234455666644
Q ss_pred HhhCCHHHHHHHHHHHHHH
Q 007930 461 LQLYRINEATELFEEARGV 479 (584)
Q Consensus 461 ~~~g~~~~A~~~~~~a~~~ 479 (584)
.-. ..+.|-..+.+.+..
T Consensus 367 ~l~-~~D~a~~~f~~~i~~ 384 (960)
T KOG1938|consen 367 LLC-QEDDADEEFSKLIAD 384 (960)
T ss_pred hhh-cchhHHHHHHHHHhh
Confidence 333 344455555555544
No 490
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.94 E-value=3.1e+02 Score=25.69 Aligned_cols=109 Identities=11% Similarity=0.050 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHhCCC
Q 007930 158 FSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKIL-EIHREHGHS 236 (584)
Q Consensus 158 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~ 236 (584)
+..+..++......+.....+....+++...... ......++..+..+....++|.-+..++.--+ ++...+...
T Consensus 102 ~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~----~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~ 177 (422)
T KOG2582|consen 102 FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPS----NGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHL 177 (422)
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHHHhccC----ccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCC
Confidence 3556778888888888888888888888765432 11344455566666777777776666554332 222222221
Q ss_pred CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 237 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
+.......++.-|.++...++++.|+.+|..++-
T Consensus 178 ~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 178 DPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred CHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 2222233344556778889999999999987754
No 491
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=40.74 E-value=64 Score=33.16 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=65.8
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL--YRINEATELFEEARGVLEQECGSCHLDTL 492 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 492 (584)
+..++..+++..+.--|..++.+.+. .+...+....+.+.++... |++.+++.-..-++.. .|...
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~----~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~--------~p~i~ 127 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPK----DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALES--------QPRIS 127 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccc----cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc--------cchHH
Confidence 55667777888877777777665442 4455666777777777764 6888888877777776 88888
Q ss_pred HHHHHHHHHHHHcCChHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~ 514 (584)
.++...+.+|...++.+-|.+.
T Consensus 128 ~~Ll~r~~~y~al~k~d~a~rd 149 (748)
T KOG4151|consen 128 KALLKRARKYEALNKLDLAVRD 149 (748)
T ss_pred HHHhhhhhHHHHHHHHHHHHHH
Confidence 8898889999988887777776
No 492
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.54 E-value=3.6e+02 Score=28.10 Aligned_cols=183 Identities=11% Similarity=0.036 Sum_probs=92.4
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHH
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYE---ALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~ 396 (584)
+...+.+..++-..|....+|+.-+++.+..-.+-... +..+...+.+..+..+- .-|+-++|+...-.+++.
T Consensus 197 ~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~----~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 197 DVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTL----KVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK 272 (1226)
T ss_pred cccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchh----hhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh
Confidence 34556677788888889999988877766554432110 00000011111122222 346777777766666553
Q ss_pred HHhCCCCcccHHHHHHHHHHHHH---------HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC-H
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLY---------VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR-I 466 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 466 (584)
.... .+ ..+...|++|. ..+..+.|+++|+++.+.- |. ..+=.+++.++...|+ +
T Consensus 273 eg~v---ap---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve--------P~-~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 273 EGPV---AP---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE--------PL-EYSGINLATLLRAAGEHF 337 (1226)
T ss_pred cCCC---CC---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC--------ch-hhccccHHHHHHHhhhhc
Confidence 3222 11 12223455543 3466788999999998852 21 1223355556655553 4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH---HcCChHHHHHHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYD---ALGRVEDAIEILEYILKV 521 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~ 521 (584)
+...++-+-.+.+-.-+...........|+..|..+. -.+++.+|+..-+...++
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 4444444434433222222223333344444444332 346777777666666555
No 493
>PRK09169 hypothetical protein; Validated
Probab=40.18 E-value=7.7e+02 Score=30.07 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=21.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 007930 497 NLAATYDALGRVEDAIEILEYILKVREEKLGTANPDID 534 (584)
Q Consensus 497 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~ 534 (584)
.++.++..+.++.+.-.+-+-++.+........+|...
T Consensus 752 ~lAnsLNaLsKwp~~~~c~~a~~~La~~lg~~~~p~~~ 789 (2316)
T PRK09169 752 GLANSLNALSKWPQEPACQQAALLLAERLGSAGLPFRT 789 (2316)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCchhh
Confidence 44555555555555555666666666665554555433
No 494
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.88 E-value=2.1e+02 Score=25.91 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=13.3
Q ss_pred HhCCHHHHHHHHHHHHHHH
Q 007930 212 QAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~ 230 (584)
..++|++|..+|+.+++.+
T Consensus 22 ~a~nY~eA~~lY~~aleYF 40 (439)
T KOG0739|consen 22 NAKNYEEALRLYQNALEYF 40 (439)
T ss_pred chhchHHHHHHHHHHHHHH
Confidence 3467788888887777643
No 495
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=39.46 E-value=2.5e+02 Score=24.18 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=40.1
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 459 ACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 459 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
-+.+.+..++|+...+.-++. .|........+-.++.-.|+|++|...++-+-++
T Consensus 10 eLL~~~sL~dai~~a~~qVka--------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKA--------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhc--------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 345667788888877777665 6766677777778888888888888777665443
No 496
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=39.28 E-value=1.9e+02 Score=22.81 Aligned_cols=51 Identities=18% Similarity=0.018 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVE 509 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 509 (584)
......+...+..|++.-|.++...++.. +|+...+....+.++.++|.-.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~a--------dp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFA--------DPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHHHhc
Confidence 44556677778889999999999999988 7888788888888887776543
No 497
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=38.43 E-value=3.6e+02 Score=25.71 Aligned_cols=61 Identities=7% Similarity=-0.202 Sum_probs=40.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYE 182 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 182 (584)
..+...+..++|..|...|+++.....+ +..............|..++..-++++|.+.++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~--~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLS--AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccC--hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3555788999999999999998865321 112222222223344555567778999999998
No 498
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.78 E-value=1.4e+02 Score=25.13 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.|+ +.++.+++.++...|+.++|....+++..+
T Consensus 141 ~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPD-PNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 453 578899999999999999999999999998
No 499
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=36.89 E-value=1.4e+02 Score=20.42 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHh
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL-GTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 547 (584)
+....+..+...|.-.-..|++++|..+|..+++.+.... ...+|....+...-..-|...
T Consensus 1 d~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~R 62 (75)
T cd02677 1 DYLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKR 62 (75)
T ss_pred ChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
No 500
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=36.88 E-value=1.6e+02 Score=25.98 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHc
Q 007930 216 FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSL 295 (584)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 295 (584)
...|.+++..|+-.....+ +...++.+.+..+..|+...+|+.|..+|..|...+....-.......-..+-....++
T Consensus 55 ~~n~~e~~d~ALm~Ae~r~--D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kkQ 132 (368)
T COG5091 55 MENAKELLDKALMTAEGRG--DRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQ 132 (368)
T ss_pred hhhHHHHHHHHHHhhhccC--CcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHhh
Q ss_pred CC
Q 007930 296 CR 297 (584)
Q Consensus 296 g~ 297 (584)
.+
T Consensus 133 ~~ 134 (368)
T COG5091 133 KD 134 (368)
T ss_pred cc
Done!