Query 007930
Match_columns 584
No_of_seqs 1492 out of 3346
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 13:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-40 5.6E-45 317.3 39.2 385 76-549 4-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 7.4E-39 2.5E-43 305.8 38.3 372 120-571 4-375 (388)
3 2xpi_A Anaphase-promoting comp 100.0 7.1E-36 2.4E-40 302.6 43.8 433 69-571 82-586 (597)
4 2gw1_A Mitochondrial precursor 100.0 1.3E-33 4.5E-38 280.7 44.3 402 70-540 5-489 (514)
5 2xpi_A Anaphase-promoting comp 100.0 2.7E-34 9.2E-39 291.0 38.7 369 113-545 198-595 (597)
6 3fp2_A TPR repeat-containing p 100.0 1.6E-33 5.5E-38 281.6 40.1 425 69-571 23-498 (537)
7 2gw1_A Mitochondrial precursor 100.0 4E-34 1.4E-38 284.4 34.3 397 113-571 4-485 (514)
8 4g1t_A Interferon-induced prot 100.0 1.2E-33 4E-38 277.6 32.8 413 84-570 24-465 (472)
9 4g1t_A Interferon-induced prot 100.0 4E-33 1.4E-37 273.7 30.6 399 64-541 44-471 (472)
10 2y4t_A DNAJ homolog subfamily 100.0 1.2E-31 4.2E-36 261.6 39.6 396 63-554 18-445 (450)
11 2y4t_A DNAJ homolog subfamily 100.0 1.3E-31 4.6E-36 261.3 38.5 385 111-582 22-440 (450)
12 3sf4_A G-protein-signaling mod 100.0 1.1E-30 3.9E-35 251.2 41.4 344 114-474 8-371 (406)
13 3sf4_A G-protein-signaling mod 100.0 5.2E-31 1.8E-35 253.5 39.0 343 159-518 10-373 (406)
14 3fp2_A TPR repeat-containing p 100.0 6.2E-31 2.1E-35 262.8 38.3 391 66-521 54-491 (537)
15 3ieg_A DNAJ homolog subfamily 100.0 9.5E-31 3.3E-35 247.2 37.2 334 159-551 4-357 (359)
16 3ieg_A DNAJ homolog subfamily 100.0 8.5E-30 2.9E-34 240.7 35.1 336 115-506 3-354 (359)
17 4a1s_A PINS, partner of inscut 100.0 5.1E-29 1.7E-33 239.9 38.7 314 112-440 45-375 (411)
18 3ro2_A PINS homolog, G-protein 100.0 1.4E-28 4.9E-33 230.1 40.3 312 115-441 5-336 (338)
19 4a1s_A PINS, partner of inscut 100.0 8.8E-29 3E-33 238.2 39.1 313 196-522 44-373 (411)
20 2xm6_A Protein corresponding t 100.0 1.3E-27 4.4E-32 234.6 44.3 396 68-572 36-475 (490)
21 3ro2_A PINS homolog, G-protein 100.0 8.2E-28 2.8E-32 224.9 39.1 312 199-524 4-335 (338)
22 3hym_B Cell division cycle pro 100.0 8.7E-29 3E-33 230.8 25.4 301 197-551 19-322 (330)
23 2xm6_A Protein corresponding t 100.0 4.1E-26 1.4E-30 224.0 42.4 353 114-566 38-434 (490)
24 3ulq_A Response regulator aspa 100.0 3E-26 1E-30 217.7 39.0 353 69-443 10-374 (383)
25 3ulq_A Response regulator aspa 100.0 6.6E-26 2.3E-30 215.4 40.1 349 115-485 12-374 (383)
26 1fch_A Peroxisomal targeting s 100.0 8.8E-29 3E-33 234.5 19.4 312 167-528 34-366 (368)
27 1fch_A Peroxisomal targeting s 100.0 5.4E-28 1.8E-32 229.1 24.5 313 209-562 34-357 (368)
28 3hym_B Cell division cycle pro 100.0 1.2E-27 4.3E-32 222.9 25.4 294 161-509 25-322 (330)
29 4eqf_A PEX5-related protein; a 100.0 3.5E-26 1.2E-30 216.1 29.1 277 243-554 66-347 (365)
30 3q15_A PSP28, response regulat 100.0 1.7E-24 5.9E-29 205.0 39.6 347 71-441 12-369 (378)
31 4eqf_A PEX5-related protein; a 100.0 3.9E-26 1.3E-30 215.8 26.4 286 114-439 64-358 (365)
32 3q15_A PSP28, response regulat 99.9 1.9E-24 6.4E-29 204.8 34.6 339 168-527 22-371 (378)
33 3nf1_A KLC 1, kinesin light ch 99.9 3.1E-24 1E-28 198.1 33.0 285 60-355 16-309 (311)
34 3cv0_A Peroxisome targeting si 99.9 5.1E-25 1.7E-29 204.9 26.3 269 243-566 22-317 (327)
35 3nf1_A KLC 1, kinesin light ch 99.9 4.5E-24 1.5E-28 197.0 31.6 280 192-480 19-308 (311)
36 3cv0_A Peroxisome targeting si 99.9 3.9E-25 1.3E-29 205.7 24.4 277 198-528 19-322 (327)
37 1hz4_A MALT regulatory protein 99.9 6.7E-23 2.3E-27 194.1 39.6 312 199-524 13-325 (373)
38 3uq3_A Heat shock protein STI1 99.9 2.9E-23 9.9E-28 185.8 31.0 235 280-565 3-237 (258)
39 1hz4_A MALT regulatory protein 99.9 1.5E-22 5.1E-27 191.7 35.7 314 113-442 12-327 (373)
40 2ooe_A Cleavage stimulation fa 99.9 3.1E-22 1E-26 198.5 39.2 429 66-568 8-496 (530)
41 2h6f_A Protein farnesyltransfe 99.9 4.6E-24 1.6E-28 198.7 24.3 255 238-547 93-366 (382)
42 3uq3_A Heat shock protein STI1 99.9 4.2E-23 1.4E-27 184.7 29.1 254 240-543 3-256 (258)
43 2h6f_A Protein farnesyltransfe 99.9 8.8E-24 3E-28 196.8 24.3 245 277-571 92-355 (382)
44 3u4t_A TPR repeat-containing p 99.9 6.3E-24 2.2E-28 191.7 22.5 263 201-506 4-269 (272)
45 3edt_B KLC 2, kinesin light ch 99.9 3.5E-23 1.2E-27 188.1 27.0 269 168-437 11-281 (283)
46 3u4t_A TPR repeat-containing p 99.9 7.9E-24 2.7E-28 191.1 21.1 251 283-571 4-257 (272)
47 3e4b_A ALGK; tetratricopeptide 99.9 1E-23 3.4E-28 203.3 22.9 373 75-554 7-412 (452)
48 2pl2_A Hypothetical conserved 99.9 2.4E-23 8.1E-28 179.8 19.8 198 282-520 5-213 (217)
49 2pl2_A Hypothetical conserved 99.9 3.2E-23 1.1E-27 179.0 20.1 199 321-561 2-211 (217)
50 3edt_B KLC 2, kinesin light ch 99.9 3.6E-22 1.2E-26 181.4 28.0 268 125-396 11-281 (283)
51 3e4b_A ALGK; tetratricopeptide 99.9 6.9E-23 2.4E-27 197.5 23.8 353 120-568 8-391 (452)
52 3mkr_A Coatomer subunit epsilo 99.9 6.7E-22 2.3E-26 178.4 27.9 280 208-556 7-287 (291)
53 2ooe_A Cleavage stimulation fa 99.9 1.4E-20 4.9E-25 186.5 38.0 387 111-566 9-456 (530)
54 3mkr_A Coatomer subunit epsilo 99.9 1.6E-21 5.5E-26 175.9 24.8 264 250-571 7-271 (291)
55 1qqe_A Vesicular transport pro 99.9 3.5E-21 1.2E-25 174.7 24.5 250 257-544 32-284 (292)
56 1qqe_A Vesicular transport pro 99.9 3.3E-21 1.1E-25 174.8 24.2 250 215-502 32-284 (292)
57 1ouv_A Conserved hypothetical 99.9 5.9E-20 2E-24 165.5 29.6 222 242-521 6-251 (273)
58 2q7f_A YRRB protein; TPR, prot 99.9 2.2E-21 7.5E-26 171.8 19.6 222 279-548 20-241 (243)
59 1ouv_A Conserved hypothetical 99.9 7.3E-20 2.5E-24 164.9 28.8 233 280-573 4-260 (273)
60 1xi4_A Clathrin heavy chain; a 99.9 5.4E-19 1.9E-23 180.6 37.1 355 75-554 989-1375(1630)
61 3vtx_A MAMA; tetratricopeptide 99.9 1.7E-20 5.6E-25 158.0 21.7 172 366-569 4-175 (184)
62 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.6E-20 5.4E-25 169.7 20.6 255 249-554 12-266 (275)
63 2ho1_A Type 4 fimbrial biogene 99.9 1.3E-19 4.3E-24 161.4 26.0 213 280-538 35-247 (252)
64 3vtx_A MAMA; tetratricopeptide 99.9 4.5E-20 1.5E-24 155.3 21.7 172 323-534 4-175 (184)
65 2ifu_A Gamma-SNAP; membrane fu 99.9 1.1E-19 3.7E-24 166.1 25.4 248 170-429 3-253 (307)
66 4abn_A Tetratricopeptide repea 99.9 5.1E-20 1.7E-24 178.6 24.5 214 300-555 79-313 (474)
67 2ifu_A Gamma-SNAP; membrane fu 99.9 3.1E-19 1.1E-23 163.1 28.0 249 127-388 3-253 (307)
68 2vq2_A PILW, putative fimbrial 99.9 2.1E-19 7.2E-24 156.9 25.8 213 320-571 4-218 (225)
69 2vq2_A PILW, putative fimbrial 99.9 4.5E-19 1.5E-23 154.7 27.9 216 277-538 3-220 (225)
70 2q7f_A YRRB protein; TPR, prot 99.9 2.8E-20 9.6E-25 164.6 20.1 220 241-506 22-241 (243)
71 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.3E-20 1.1E-24 167.6 20.2 258 207-515 12-269 (275)
72 4abn_A Tetratricopeptide repea 99.9 6E-20 2.1E-24 178.1 23.0 204 277-518 97-318 (474)
73 2ho1_A Type 4 fimbrial biogene 99.9 1.5E-19 5.1E-24 160.9 23.5 213 320-571 32-245 (252)
74 4gyw_A UDP-N-acetylglucosamine 99.9 4E-20 1.4E-24 185.8 21.3 174 363-568 5-178 (723)
75 1xi4_A Clathrin heavy chain; a 99.8 1.2E-17 4E-22 171.0 38.7 353 77-548 1055-1415(1630)
76 4gyw_A UDP-N-acetylglucosamine 99.8 1.6E-19 5.5E-24 181.4 21.9 175 320-526 5-179 (723)
77 4i17_A Hypothetical protein; T 99.8 8.2E-19 2.8E-23 153.2 19.4 189 282-503 7-225 (228)
78 3qky_A Outer membrane assembly 99.8 4.4E-18 1.5E-22 151.9 24.0 224 278-554 11-252 (261)
79 4i17_A Hypothetical protein; T 99.8 7.6E-18 2.6E-22 147.0 22.1 173 367-571 7-216 (228)
80 3qky_A Outer membrane assembly 99.8 4.2E-17 1.4E-21 145.6 22.6 205 159-387 16-252 (261)
81 2ond_A Cleavage stimulation fa 99.8 5.7E-17 2E-21 148.3 23.9 225 299-568 33-274 (308)
82 4b4t_Q 26S proteasome regulato 99.8 2.8E-16 9.4E-21 152.0 29.5 240 203-447 7-255 (434)
83 1b89_A Protein (clathrin heavy 99.8 5.1E-19 1.8E-23 162.1 7.3 331 83-519 15-353 (449)
84 4ga2_A E3 SUMO-protein ligase 99.8 4.2E-18 1.4E-22 136.9 11.6 147 372-549 2-149 (150)
85 3n71_A Histone lysine methyltr 99.8 5.8E-17 2E-21 154.7 20.9 148 413-561 314-461 (490)
86 2ond_A Cleavage stimulation fa 99.8 1.1E-16 3.7E-21 146.4 22.1 221 259-521 33-270 (308)
87 3gw4_A Uncharacterized protein 99.8 1.9E-16 6.4E-21 135.5 22.0 194 293-501 3-196 (203)
88 3gw4_A Uncharacterized protein 99.8 2.5E-16 8.4E-21 134.8 22.7 193 169-376 3-196 (203)
89 1b89_A Protein (clathrin heavy 99.7 8.1E-18 2.8E-22 154.2 12.7 334 124-562 12-353 (449)
90 3as5_A MAMA; tetratricopeptide 99.7 1E-16 3.5E-21 135.0 18.6 174 365-570 6-179 (186)
91 4b4t_Q 26S proteasome regulato 99.7 3.4E-15 1.2E-19 144.4 31.7 240 72-319 5-253 (434)
92 2qfc_A PLCR protein; TPR, HTH, 99.7 3.1E-16 1.1E-20 142.3 22.7 198 321-525 72-270 (293)
93 3u3w_A Transcriptional activat 99.7 3.7E-16 1.2E-20 141.9 22.8 195 324-525 75-270 (293)
94 2qfc_A PLCR protein; TPR, HTH, 99.7 7.4E-16 2.5E-20 139.8 24.2 199 112-316 72-271 (293)
95 3u3w_A Transcriptional activat 99.7 3.1E-16 1.1E-20 142.3 20.7 194 243-444 76-273 (293)
96 3urz_A Uncharacterized protein 99.7 2.4E-16 8.3E-21 134.7 18.7 173 367-572 4-194 (208)
97 4ga2_A E3 SUMO-protein ligase 99.7 3.2E-17 1.1E-21 131.7 11.4 135 413-571 2-136 (150)
98 4e6h_A MRNA 3'-END-processing 99.7 7.6E-13 2.6E-17 131.5 44.9 450 65-582 60-589 (679)
99 3urz_A Uncharacterized protein 99.7 4.2E-16 1.4E-20 133.2 18.9 164 283-479 5-186 (208)
100 3as5_A MAMA; tetratricopeptide 99.7 5.6E-16 1.9E-20 130.4 19.3 171 320-522 4-174 (186)
101 2pzi_A Probable serine/threoni 99.7 6.9E-17 2.4E-21 163.8 15.7 200 293-525 402-602 (681)
102 2pzi_A Probable serine/threoni 99.7 4.3E-17 1.5E-21 165.3 13.4 192 322-549 392-583 (681)
103 3n71_A Histone lysine methyltr 99.7 1.1E-15 3.8E-20 145.9 21.0 156 74-232 312-467 (490)
104 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.8E-15 9.5E-20 130.1 20.5 183 367-569 4-218 (225)
105 3ro3_A PINS homolog, G-protein 99.7 5.6E-15 1.9E-19 121.3 20.4 158 277-440 4-161 (164)
106 3ro3_A PINS homolog, G-protein 99.7 7.9E-15 2.7E-19 120.4 21.2 157 196-356 5-161 (164)
107 2yhc_A BAMD, UPF0169 lipoprote 99.7 3E-15 1E-19 129.8 19.1 199 159-400 5-217 (225)
108 4gco_A Protein STI-1; structur 99.7 1.5E-15 5E-20 117.5 15.2 117 404-544 9-125 (126)
109 3dra_A Protein farnesyltransfe 99.6 1.1E-13 3.7E-18 123.4 24.3 233 293-571 43-295 (306)
110 3qww_A SET and MYND domain-con 99.6 6.9E-15 2.4E-19 138.1 17.5 122 420-541 310-431 (433)
111 4gco_A Protein STI-1; structur 99.6 1.1E-14 3.6E-19 112.7 15.2 117 363-502 9-125 (126)
112 3qwp_A SET and MYND domain-con 99.6 8.7E-15 3E-19 137.9 16.7 132 417-548 296-427 (429)
113 3gyz_A Chaperone protein IPGC; 99.6 2.3E-15 7.7E-20 119.8 10.7 111 446-573 32-142 (151)
114 2r5s_A Uncharacterized protein 99.6 4.3E-15 1.5E-19 123.3 12.5 162 368-562 7-171 (176)
115 3dra_A Protein farnesyltransfe 99.6 2.8E-13 9.7E-18 120.7 24.9 237 255-542 46-301 (306)
116 3qou_A Protein YBBN; thioredox 99.6 2E-14 6.7E-19 129.5 17.1 165 366-562 116-282 (287)
117 1p5q_A FKBP52, FK506-binding p 99.6 7.4E-15 2.5E-19 135.4 13.7 163 379-564 125-294 (336)
118 2r5s_A Uncharacterized protein 99.6 5.5E-15 1.9E-19 122.7 11.2 169 68-270 3-172 (176)
119 4f3v_A ESX-1 secretion system 99.6 3.8E-14 1.3E-18 122.8 16.0 221 326-582 9-252 (282)
120 2vsy_A XCC0866; transferase, g 99.6 3.1E-14 1.1E-18 142.3 17.7 157 380-568 2-161 (568)
121 3rjv_A Putative SEL1 repeat pr 99.6 1.8E-13 6.2E-18 117.1 20.0 174 300-521 4-197 (212)
122 3gyz_A Chaperone protein IPGC; 99.6 1E-14 3.5E-19 116.0 10.8 102 404-521 32-133 (151)
123 3rjv_A Putative SEL1 repeat pr 99.6 9.9E-14 3.4E-18 118.7 17.6 182 341-571 3-204 (212)
124 4f3v_A ESX-1 secretion system 99.6 2.9E-14 9.8E-19 123.6 14.2 217 286-541 11-248 (282)
125 3qou_A Protein YBBN; thioredox 99.6 5.2E-14 1.8E-18 126.8 16.4 170 320-521 113-284 (287)
126 4e6h_A MRNA 3'-END-processing 99.6 3.9E-11 1.3E-15 119.3 37.6 413 88-566 48-535 (679)
127 2vsy_A XCC0866; transferase, g 99.6 2.9E-14 9.9E-19 142.5 15.3 165 337-541 2-169 (568)
128 4gcn_A Protein STI-1; structur 99.5 2.3E-13 7.8E-18 105.4 14.2 110 279-398 5-114 (127)
129 4gcn_A Protein STI-1; structur 99.5 4.9E-13 1.7E-17 103.5 15.8 110 448-567 6-115 (127)
130 2fbn_A 70 kDa peptidylprolyl i 99.5 7E-14 2.4E-18 118.6 11.8 168 373-563 10-185 (198)
131 2fo7_A Synthetic consensus TPR 99.5 7.9E-13 2.7E-17 104.3 17.2 134 409-567 2-135 (136)
132 1p5q_A FKBP52, FK506-binding p 99.5 1.6E-13 5.6E-18 126.4 14.4 163 170-354 125-295 (336)
133 2vgx_A Chaperone SYCD; alterna 99.5 1.7E-13 6E-18 109.3 12.5 108 446-570 17-124 (148)
134 3qww_A SET and MYND domain-con 99.5 6E-13 2E-17 125.0 18.0 126 79-207 306-431 (433)
135 3upv_A Heat shock protein STI1 99.5 9.2E-13 3.2E-17 102.3 16.2 122 407-546 3-124 (126)
136 2vgx_A Chaperone SYCD; alterna 99.5 2.3E-13 7.9E-18 108.6 12.9 100 407-522 20-119 (148)
137 3dss_A Geranylgeranyl transfer 99.5 2.1E-11 7.1E-16 109.1 26.5 230 293-571 40-311 (331)
138 2fo7_A Synthetic consensus TPR 99.5 1.7E-12 5.9E-17 102.3 17.8 131 368-521 2-132 (136)
139 3rkv_A Putative peptidylprolyl 99.5 6.6E-13 2.3E-17 108.4 14.3 134 405-554 8-152 (162)
140 3qwp_A SET and MYND domain-con 99.5 8.3E-13 2.8E-17 124.5 16.7 139 72-213 288-426 (429)
141 1hh8_A P67PHOX, NCF-2, neutrop 99.5 7.9E-13 2.7E-17 113.7 15.1 143 409-571 7-157 (213)
142 1a17_A Serine/threonine protei 99.5 4.8E-12 1.6E-16 103.9 18.8 132 407-563 12-145 (166)
143 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.1E-13 3.7E-18 133.3 10.1 161 379-562 246-413 (457)
144 1a17_A Serine/threonine protei 99.5 4.1E-12 1.4E-16 104.3 17.9 138 364-524 10-149 (166)
145 2lni_A Stress-induced-phosphop 99.5 2.2E-12 7.5E-17 101.4 15.2 123 403-549 11-133 (133)
146 2c2l_A CHIP, carboxy terminus 99.5 3.8E-13 1.3E-17 120.6 11.6 195 115-353 4-199 (281)
147 2c2l_A CHIP, carboxy terminus 99.4 3.7E-13 1.3E-17 120.7 11.3 194 282-520 4-198 (281)
148 3dss_A Geranylgeranyl transfer 99.4 2.2E-10 7.5E-15 102.6 28.9 236 254-543 41-318 (331)
149 2hr2_A Hypothetical protein; a 99.4 3E-12 1E-16 99.9 14.5 117 450-568 11-135 (159)
150 2hr2_A Hypothetical protein; a 99.4 8.5E-12 2.9E-16 97.3 17.0 128 281-410 10-145 (159)
151 3sz7_A HSC70 cochaperone (SGT) 99.4 2.4E-12 8.2E-17 105.3 14.7 115 403-541 6-120 (164)
152 2xcb_A PCRH, regulatory protei 99.4 3.1E-12 1.1E-16 101.6 14.8 103 404-522 14-116 (142)
153 2fbn_A 70 kDa peptidylprolyl i 99.4 6.2E-13 2.1E-17 112.7 11.4 165 329-518 9-183 (198)
154 1hh8_A P67PHOX, NCF-2, neutrop 99.4 3.2E-12 1.1E-16 109.9 15.7 137 367-521 6-150 (213)
155 3upv_A Heat shock protein STI1 99.4 4.1E-12 1.4E-16 98.6 14.5 100 449-565 3-102 (126)
156 2vyi_A SGTA protein; chaperone 99.4 5.5E-12 1.9E-16 98.7 15.4 122 405-550 9-130 (131)
157 2xcb_A PCRH, regulatory protei 99.4 4.3E-12 1.5E-16 100.7 14.6 108 446-570 14-121 (142)
158 1hxi_A PEX5, peroxisome target 99.4 3.9E-12 1.3E-16 97.4 13.3 100 452-568 19-118 (121)
159 3q7a_A Farnesyltransferase alp 99.4 4E-11 1.4E-15 107.7 21.4 249 280-569 52-337 (349)
160 3sz7_A HSC70 cochaperone (SGT) 99.4 6.9E-12 2.3E-16 102.5 15.1 108 446-570 7-114 (164)
161 2vyi_A SGTA protein; chaperone 99.4 2E-11 6.9E-16 95.4 16.3 125 362-509 7-131 (131)
162 3q49_B STIP1 homology and U bo 99.4 1.4E-11 4.9E-16 97.2 15.3 125 408-551 9-133 (137)
163 1na0_A Designed protein CTPR3; 99.4 2.9E-11 9.9E-16 93.6 16.7 117 408-548 9-125 (125)
164 2e2e_A Formate-dependent nitri 99.4 4.8E-12 1.6E-16 105.1 12.7 128 418-570 20-150 (177)
165 2lni_A Stress-induced-phosphop 99.4 8.5E-12 2.9E-16 98.0 13.4 124 361-507 10-133 (133)
166 2e2e_A Formate-dependent nitri 99.4 5.2E-12 1.8E-16 104.9 12.0 122 377-521 20-144 (177)
167 3q7a_A Farnesyltransferase alp 99.3 2.2E-10 7.5E-15 103.0 22.4 257 241-542 53-345 (349)
168 1ihg_A Cyclophilin 40; ppiase 99.3 1E-11 3.5E-16 115.5 14.4 133 408-556 223-363 (370)
169 3rkv_A Putative peptidylprolyl 99.3 3.3E-11 1.1E-15 98.2 15.2 128 365-508 9-148 (162)
170 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 4.9E-12 1.7E-16 121.8 11.9 155 170-346 246-407 (457)
171 1hxi_A PEX5, peroxisome target 99.3 1E-11 3.6E-16 95.0 11.3 96 410-521 19-114 (121)
172 3q49_B STIP1 homology and U bo 99.3 2.2E-11 7.7E-16 96.1 13.5 103 448-567 7-109 (137)
173 1elw_A TPR1-domain of HOP; HOP 99.3 5E-11 1.7E-15 91.1 14.9 113 408-544 4-116 (118)
174 1wao_1 Serine/threonine protei 99.3 6.7E-13 2.3E-17 128.2 3.5 165 364-551 3-183 (477)
175 1na0_A Designed protein CTPR3; 99.3 1.2E-10 4.2E-15 90.0 15.9 118 366-506 8-125 (125)
176 1elr_A TPR2A-domain of HOP; HO 99.3 7.2E-11 2.4E-15 92.3 14.4 125 408-550 4-128 (131)
177 3mv2_B Coatomer subunit epsilo 99.3 2.7E-10 9.2E-15 100.2 19.1 259 250-571 21-289 (310)
178 2xev_A YBGF; tetratricopeptide 99.3 2.3E-10 8E-15 89.0 16.9 116 410-543 4-119 (129)
179 2dba_A Smooth muscle cell asso 99.3 9.9E-11 3.4E-15 93.8 14.5 120 406-546 26-145 (148)
180 1wao_1 Serine/threonine protei 99.3 2E-12 6.9E-17 124.9 4.9 126 409-559 7-134 (477)
181 2xev_A YBGF; tetratricopeptide 99.3 8.1E-11 2.8E-15 91.7 12.9 107 452-572 4-113 (129)
182 3mv2_B Coatomer subunit epsilo 99.3 5.8E-10 2E-14 98.1 19.4 255 209-521 22-282 (310)
183 2if4_A ATFKBP42; FKBP-like, al 99.2 1.7E-11 6E-16 112.8 9.4 145 408-569 179-333 (338)
184 1elr_A TPR2A-domain of HOP; HO 99.2 3.3E-10 1.1E-14 88.4 15.5 124 366-506 3-126 (131)
185 3k9i_A BH0479 protein; putativ 99.2 3.1E-11 1.1E-15 92.0 8.8 89 420-521 2-90 (117)
186 1ihg_A Cyclophilin 40; ppiase 99.2 1.8E-10 6.2E-15 107.1 15.5 133 366-514 222-363 (370)
187 1elw_A TPR1-domain of HOP; HOP 99.2 2.7E-10 9.1E-15 87.0 13.9 104 450-570 4-107 (118)
188 2kck_A TPR repeat; tetratricop 99.2 3.1E-11 1.1E-15 91.3 7.7 102 450-568 6-110 (112)
189 1dce_A Protein (RAB geranylger 99.2 3E-10 1E-14 111.5 15.7 177 336-552 40-244 (567)
190 1zu2_A Mitochondrial import re 99.2 1.6E-10 5.6E-15 89.8 9.8 93 419-535 13-126 (158)
191 2if4_A ATFKBP42; FKBP-like, al 99.2 4.4E-11 1.5E-15 110.1 7.7 140 366-521 178-328 (338)
192 1dce_A Protein (RAB geranylger 99.1 1.4E-09 4.8E-14 106.9 18.1 177 294-510 40-244 (567)
193 2dba_A Smooth muscle cell asso 99.1 7.1E-10 2.4E-14 88.7 13.2 106 448-570 26-134 (148)
194 1zu2_A Mitochondrial import re 99.1 2.5E-10 8.5E-15 88.8 9.1 93 462-571 14-127 (158)
195 1na3_A Designed protein CTPR2; 99.1 1.3E-09 4.5E-14 78.6 12.3 87 446-548 5-91 (91)
196 3k9i_A BH0479 protein; putativ 99.1 1.4E-10 4.7E-15 88.4 6.9 95 462-570 2-96 (117)
197 2uy1_A Cleavage stimulation fa 99.1 3.3E-07 1.1E-11 88.6 31.2 214 127-400 6-245 (493)
198 2kck_A TPR repeat; tetratricop 99.1 3.2E-10 1.1E-14 85.7 7.6 97 409-521 7-106 (112)
199 2l6j_A TPR repeat-containing p 99.0 7.9E-10 2.7E-14 83.3 9.1 89 450-554 4-98 (111)
200 2uy1_A Cleavage stimulation fa 99.0 2.7E-06 9.4E-11 82.2 34.3 340 84-518 7-380 (493)
201 2kat_A Uncharacterized protein 99.0 5.7E-09 2E-13 79.0 11.7 103 426-550 3-105 (115)
202 2l6j_A TPR repeat-containing p 98.9 1.4E-09 4.6E-14 82.0 5.2 94 408-517 4-103 (111)
203 1na3_A Designed protein CTPR2; 98.9 3.4E-08 1.2E-12 71.0 12.0 85 406-506 7-91 (91)
204 2kat_A Uncharacterized protein 98.9 1.9E-08 6.6E-13 76.1 11.0 85 468-569 3-87 (115)
205 3ma5_A Tetratricopeptide repea 98.9 2.4E-08 8.1E-13 73.1 10.8 88 448-549 5-92 (100)
206 1klx_A Cysteine rich protein B 98.8 4.1E-08 1.4E-12 76.7 11.7 111 380-521 8-126 (138)
207 2kc7_A BFR218_protein; tetratr 98.8 2.7E-08 9.1E-13 72.9 9.2 89 454-567 4-93 (99)
208 3ma5_A Tetratricopeptide repea 98.8 2.7E-08 9.3E-13 72.8 8.3 74 488-570 3-76 (100)
209 1klx_A Cysteine rich protein B 98.7 2.2E-07 7.6E-12 72.5 12.7 115 421-568 8-130 (138)
210 2kc7_A BFR218_protein; tetratr 98.6 1.6E-07 5.5E-12 68.6 7.4 86 412-521 4-90 (99)
211 3txn_A 26S proteasome regulato 98.5 5.3E-05 1.8E-09 69.3 23.5 214 284-508 21-236 (394)
212 2v5f_A Prolyl 4-hydroxylase su 98.5 2.6E-06 9.1E-11 62.4 12.3 84 450-542 5-88 (104)
213 3txn_A 26S proteasome regulato 98.4 8.4E-05 2.9E-09 68.0 23.3 211 244-465 21-235 (394)
214 3ly7_A Transcriptional activat 98.4 2.2E-05 7.5E-10 70.5 18.3 132 372-521 201-339 (372)
215 3u64_A Protein TP_0956; tetrat 98.4 7.7E-06 2.6E-10 70.1 14.4 87 465-568 178-273 (301)
216 2v5f_A Prolyl 4-hydroxylase su 98.4 7.4E-06 2.5E-10 60.0 12.7 82 409-499 6-87 (104)
217 3bee_A Putative YFRE protein; 98.4 2.2E-06 7.5E-11 60.9 9.2 75 488-571 2-79 (93)
218 4g26_A Pentatricopeptide repea 98.4 5E-05 1.7E-09 73.4 20.9 168 284-479 28-204 (501)
219 1pc2_A Mitochondria fission pr 98.4 7E-06 2.4E-10 63.1 11.8 79 449-543 31-114 (152)
220 3ly7_A Transcriptional activat 98.3 4.8E-05 1.6E-09 68.4 18.1 148 413-583 201-355 (372)
221 4g26_A Pentatricopeptide repea 98.3 0.0001 3.5E-09 71.2 20.7 168 326-521 28-204 (501)
222 3ffl_A Anaphase-promoting comp 98.3 1.9E-05 6.5E-10 60.9 12.3 113 71-184 20-148 (167)
223 3bee_A Putative YFRE protein; 98.2 1.1E-05 3.8E-10 57.2 10.2 65 449-521 5-72 (93)
224 3u64_A Protein TP_0956; tetrat 98.2 0.00031 1E-08 60.3 20.5 83 423-521 178-269 (301)
225 3ffl_A Anaphase-promoting comp 98.2 3.4E-05 1.2E-09 59.6 12.7 111 115-225 20-147 (167)
226 1pc2_A Mitochondria fission pr 98.1 2.9E-05 9.8E-10 59.7 11.2 89 466-571 14-107 (152)
227 4b4t_P 26S proteasome regulato 97.9 0.0041 1.4E-07 58.9 23.7 219 214-442 30-252 (445)
228 4b4t_P 26S proteasome regulato 97.8 0.024 8.1E-07 53.7 28.0 219 255-482 29-250 (445)
229 1nzn_A CGI-135 protein, fissio 97.5 0.002 6.9E-08 47.5 11.2 97 423-542 16-116 (126)
230 1nzn_A CGI-135 protein, fissio 97.3 0.0038 1.3E-07 46.1 11.1 94 465-571 16-110 (126)
231 4h7y_A Dual specificity protei 97.2 0.0088 3E-07 45.2 12.0 109 320-437 9-123 (161)
232 4h7y_A Dual specificity protei 97.2 0.0072 2.5E-07 45.6 10.9 104 409-521 14-123 (161)
233 4b4t_R RPN7, 26S proteasome re 96.9 0.008 2.7E-07 56.7 11.6 112 278-397 127-238 (429)
234 3o48_A Mitochondria fission 1 96.7 0.04 1.4E-06 40.8 11.7 78 450-543 40-121 (134)
235 1y8m_A FIS1; mitochondria, unk 96.4 0.055 1.9E-06 40.6 10.9 75 449-539 38-116 (144)
236 3mkq_A Coatomer beta'-subunit; 96.3 0.29 1E-05 50.9 20.2 76 246-351 633-708 (814)
237 3o48_A Mitochondria fission 1 96.2 0.18 6.3E-06 37.3 12.6 75 408-497 40-117 (134)
238 4b4t_R RPN7, 26S proteasome re 96.1 0.018 6.1E-07 54.4 8.9 109 198-311 129-237 (429)
239 2ff4_A Probable regulatory pro 96.1 0.13 4.4E-06 47.7 14.4 112 419-538 126-252 (388)
240 4b4t_S RPN3, 26S proteasome re 96.0 0.1 3.5E-06 49.2 12.8 144 210-356 146-302 (523)
241 4gns_B Protein CSD3, chitin bi 95.9 0.17 5.9E-06 50.8 14.8 123 380-518 261-397 (754)
242 4b4t_S RPN3, 26S proteasome re 95.8 0.25 8.7E-06 46.6 14.5 151 80-234 145-304 (523)
243 3mkq_A Coatomer beta'-subunit; 95.7 0.15 5.1E-06 53.2 14.8 48 124-185 661-708 (814)
244 3spa_A Mtrpol, DNA-directed RN 95.5 0.25 8.5E-06 50.9 14.2 105 406-521 125-230 (1134)
245 3mkq_B Coatomer subunit alpha; 94.9 0.68 2.3E-05 36.6 12.2 102 333-476 14-115 (177)
246 3spa_A Mtrpol, DNA-directed RN 94.9 0.42 1.4E-05 49.3 13.7 104 241-353 126-230 (1134)
247 1y8m_A FIS1; mitochondria, unk 94.7 0.98 3.3E-05 34.0 14.2 74 408-496 39-115 (144)
248 3mkq_B Coatomer subunit alpha; 94.5 0.59 2E-05 37.0 10.9 102 291-434 14-115 (177)
249 3kae_A CDC27, possible protein 94.4 1.3 4.5E-05 34.2 12.7 99 245-354 36-144 (242)
250 2ff4_A Probable regulatory pro 94.4 0.89 3E-05 42.1 14.1 106 120-233 120-238 (388)
251 3lpz_A GET4 (YOR164C homolog); 94.3 2.7 9.2E-05 37.3 30.0 233 244-507 37-297 (336)
252 4gns_B Protein CSD3, chitin bi 94.0 5.7 0.0002 40.1 30.1 121 213-350 261-397 (754)
253 2wpv_A GET4, UPF0363 protein Y 93.9 3.1 0.00011 36.7 27.4 122 245-391 36-158 (312)
254 1ya0_A SMG-7 transcript varian 93.8 0.27 9.3E-06 46.8 9.5 64 450-521 152-215 (497)
255 3kae_A CDC27, possible protein 93.3 1.5 5.1E-05 33.9 10.6 98 119-230 37-144 (242)
256 4ady_A RPN2, 26S proteasome re 91.5 14 0.00049 38.2 38.2 177 362-563 408-588 (963)
257 1ya0_A SMG-7 transcript varian 90.2 1.3 4.4E-05 42.2 9.3 62 409-478 153-214 (497)
258 4fhn_B Nucleoporin NUP120; pro 89.6 18 0.00062 39.1 18.8 102 245-350 845-964 (1139)
259 3re2_A Predicted protein; meni 89.4 11 0.00037 33.3 13.3 86 269-357 242-329 (472)
260 4b4t_O 26S proteasome regulato 89.3 13 0.00045 34.2 17.0 131 220-355 59-200 (393)
261 4ady_A RPN2, 26S proteasome re 89.2 23 0.00077 36.8 29.1 175 281-478 412-588 (963)
262 3u84_A Menin; MLL, JUND, ledgf 87.4 16 0.00056 33.0 13.2 77 277-357 272-351 (550)
263 4fhn_B Nucleoporin NUP120; pro 87.3 36 0.0012 36.8 22.2 187 323-523 841-1052(1139)
264 3lpz_A GET4 (YOR164C homolog); 87.3 15 0.00053 32.6 31.8 254 68-337 9-295 (336)
265 4b4t_O 26S proteasome regulato 86.1 21 0.00071 32.9 16.5 137 130-272 54-199 (393)
266 4a5x_A MITD1, MIT domain-conta 85.9 4.6 0.00016 27.4 7.3 45 71-116 16-60 (86)
267 1zbp_A Hypothetical protein VP 85.7 7.1 0.00024 33.2 10.0 55 459-521 6-60 (273)
268 2wpv_A GET4, UPF0363 protein Y 85.4 19 0.00064 31.8 25.8 144 72-224 14-158 (312)
269 2crb_A Nuclear receptor bindin 85.1 6 0.00021 26.7 7.2 38 448-485 13-50 (97)
270 4gq4_A Menin; tumor suppressor 84.8 23 0.00078 32.2 13.8 88 268-358 248-337 (489)
271 2crb_A Nuclear receptor bindin 81.2 10 0.00035 25.6 7.8 39 71-110 15-53 (97)
272 1o9d_A 14-3-3-like protein C; 80.5 26 0.00088 29.8 20.4 183 325-522 9-208 (260)
273 1wfd_A Hypothetical protein 15 78.9 11 0.00039 25.9 7.3 47 70-117 14-60 (93)
274 2w2u_A Hypothetical P60 katani 78.8 6.2 0.00021 26.5 5.8 35 71-106 19-53 (83)
275 2v6x_A Vacuolar protein sortin 77.9 9.9 0.00034 25.7 6.8 46 70-116 12-57 (85)
276 2v6y_A AAA family ATPase, P60 77.5 7.3 0.00025 26.2 5.9 35 71-106 11-45 (83)
277 2rpa_A Katanin P60 ATPase-cont 76.6 7.3 0.00025 25.7 5.4 36 71-107 12-47 (78)
278 2br9_A 14-3-3E, 14-3-3 protein 74.9 36 0.0012 28.4 22.1 186 326-526 7-207 (234)
279 3uzd_A 14-3-3 protein gamma; s 73.9 39 0.0013 28.4 23.8 184 327-525 7-207 (248)
280 3ubw_A 14-3-3E, 14-3-3 protein 73.7 40 0.0014 28.5 23.9 183 326-524 33-231 (261)
281 2cpt_A SKD1 protein, vacuolar 72.9 17 0.00057 26.4 7.1 36 70-106 17-52 (117)
282 1qsa_A Protein (soluble lytic 72.3 79 0.0027 31.2 21.8 27 279-305 99-125 (618)
283 1wy6_A Hypothetical protein ST 70.4 23 0.00078 26.5 7.2 54 460-521 101-154 (172)
284 2wvi_A Mitotic checkpoint seri 70.2 22 0.00076 27.6 7.7 83 344-437 43-125 (164)
285 3efz_A 14-3-3 protein; 14-3-3, 70.0 50 0.0017 28.0 12.1 69 161-229 145-226 (268)
286 4aez_C MAD3, mitotic spindle c 69.7 46 0.0016 27.4 10.7 125 340-479 51-179 (223)
287 2br9_A 14-3-3E, 14-3-3 protein 69.3 49 0.0017 27.6 20.6 184 202-399 7-205 (234)
288 3re2_A Predicted protein; meni 69.3 62 0.0021 28.8 12.9 53 427-482 276-328 (472)
289 2wvi_A Mitotic checkpoint seri 68.3 40 0.0014 26.2 8.9 83 92-187 43-125 (164)
290 1o9d_A 14-3-3-like protein C; 67.5 57 0.0019 27.7 20.9 182 201-396 9-207 (260)
291 1zbp_A Hypothetical protein VP 66.8 60 0.0021 27.7 15.3 118 417-565 6-130 (273)
292 3esl_A Checkpoint serine/threo 66.3 51 0.0017 26.7 17.0 130 340-479 8-144 (202)
293 2npm_A 14-3-3 domain containin 65.8 62 0.0021 27.5 21.7 184 325-524 29-230 (260)
294 3esl_A Checkpoint serine/threo 65.4 53 0.0018 26.6 15.5 86 429-521 58-144 (202)
295 2o8p_A 14-3-3 domain containin 65.4 57 0.002 26.9 22.8 177 329-522 11-198 (227)
296 2ijq_A Hypothetical protein; s 65.3 12 0.00041 29.0 5.3 73 204-276 36-109 (161)
297 4a1g_A Mitotic checkpoint seri 65.2 38 0.0013 25.9 8.0 85 90-187 46-130 (152)
298 4a5x_A MITD1, MIT domain-conta 63.6 31 0.0011 23.3 8.0 41 497-537 21-62 (86)
299 3ubw_A 14-3-3E, 14-3-3 protein 63.6 68 0.0023 27.2 23.2 181 285-481 34-230 (261)
300 3u84_A Menin; MLL, JUND, ledgf 63.3 90 0.0031 28.5 12.8 67 427-498 298-364 (550)
301 2vkj_A TM1634; membrane protei 63.2 31 0.0011 23.1 7.1 46 159-210 54-100 (106)
302 3t5v_B Nuclear mRNA export pro 60.9 70 0.0024 30.0 10.6 102 131-233 142-254 (455)
303 2qx5_A Nucleoporin NIC96; mRNA 60.7 1.4E+02 0.0047 29.7 15.3 27 366-392 535-563 (661)
304 4gq2_M Nucleoporin NUP120; bet 60.5 91 0.0031 32.9 12.7 93 284-380 842-949 (950)
305 3t5v_B Nuclear mRNA export pro 60.1 34 0.0012 32.1 8.4 72 202-273 178-252 (455)
306 2cwy_A Hypothetical protein TT 59.8 26 0.00089 24.2 5.7 67 206-276 7-73 (94)
307 2cpt_A SKD1 protein, vacuolar 59.7 47 0.0016 24.1 8.5 42 501-542 27-70 (117)
308 2rpa_A Katanin P60 ATPase-cont 59.3 35 0.0012 22.5 6.1 34 494-527 14-47 (78)
309 3iqu_A 14-3-3 protein sigma; s 58.0 82 0.0028 26.3 23.9 182 326-524 10-208 (236)
310 3uzd_A 14-3-3 protein gamma; s 56.9 88 0.003 26.3 23.2 182 285-482 7-206 (248)
311 4a1g_A Mitotic checkpoint seri 56.6 65 0.0022 24.7 10.5 82 386-479 47-130 (152)
312 2v6x_A Vacuolar protein sortin 55.0 45 0.0015 22.4 8.0 41 499-539 20-61 (85)
313 4gq2_M Nucleoporin NUP120; bet 54.6 67 0.0023 33.9 10.5 69 201-271 841-926 (950)
314 3iqu_A 14-3-3 protein sigma; s 54.6 93 0.0032 25.9 22.3 180 285-480 11-206 (236)
315 1wfd_A Hypothetical protein 15 54.3 50 0.0017 22.7 8.0 40 498-537 21-61 (93)
316 2v6y_A AAA family ATPase, P60 54.0 46 0.0016 22.2 7.4 27 500-526 19-45 (83)
317 2w2u_A Hypothetical P60 katani 53.8 47 0.0016 22.2 8.0 28 499-526 26-53 (83)
318 1om2_A Protein (mitochondrial 52.2 37 0.0013 23.4 5.3 26 120-145 25-50 (95)
319 3efz_A 14-3-3 protein; 14-3-3, 51.5 1.1E+02 0.0039 26.0 12.0 96 91-187 117-226 (268)
320 1wy6_A Hypothetical protein ST 49.1 69 0.0024 24.1 6.6 54 418-479 101-154 (172)
321 2vkj_A TM1634; membrane protei 48.8 58 0.002 21.8 7.9 48 493-546 54-102 (106)
322 2npm_A 14-3-3 domain containin 46.7 1.3E+02 0.0046 25.4 23.1 184 201-399 29-230 (260)
323 3ax2_A Mitochondrial import re 46.0 50 0.0017 21.4 4.9 26 454-479 21-46 (73)
324 3t5x_A PCI domain-containing p 45.5 84 0.0029 25.5 7.7 63 110-176 9-71 (203)
325 3ax2_A Mitochondrial import re 45.0 42 0.0014 21.8 4.5 30 327-356 20-49 (73)
326 2wb7_A PT26-6P; extra chromoso 44.1 1.9E+02 0.0064 27.2 10.1 68 217-311 449-516 (526)
327 1om2_A Protein (mitochondrial 43.0 32 0.0011 23.7 3.9 30 370-399 23-52 (95)
328 2wb7_A PT26-6P; extra chromoso 41.7 53 0.0018 30.7 6.2 50 509-558 449-499 (526)
329 3t5x_A PCI domain-containing p 41.1 53 0.0018 26.7 5.8 33 280-312 12-44 (203)
330 2ijq_A Hypothetical protein; s 40.8 1.1E+02 0.0036 23.8 7.0 72 328-402 36-110 (161)
331 3r9m_A BRO1 domain-containing 39.9 2.2E+02 0.0074 25.9 12.8 118 365-482 112-285 (376)
332 3myv_A SUSD superfamily protei 39.6 52 0.0018 31.0 6.4 34 446-479 186-219 (454)
333 3kez_A Putative sugar binding 38.0 58 0.002 30.8 6.4 34 446-479 192-225 (461)
334 2cwy_A Hypothetical protein TT 37.0 1E+02 0.0034 21.2 6.9 67 247-315 6-72 (94)
335 4gq4_A Menin; tumor suppressor 36.7 2.5E+02 0.0086 25.7 17.2 54 426-482 282-335 (489)
336 4aez_C MAD3, mitotic spindle c 34.8 1.9E+02 0.0066 23.8 12.2 85 134-230 96-180 (223)
337 2xze_A STAM-binding protein; h 33.7 56 0.0019 24.8 4.4 40 493-533 41-80 (146)
338 3myv_A SUSD superfamily protei 33.5 59 0.002 30.7 5.7 35 487-521 185-219 (454)
339 1vh6_A Flagellar protein FLIS; 33.3 1.4E+02 0.0049 22.6 6.6 28 499-526 40-67 (145)
340 2o8p_A 14-3-3 domain containin 32.3 2.1E+02 0.0073 23.6 23.7 180 287-480 11-198 (227)
341 1qsa_A Protein (soluble lytic 31.8 3.8E+02 0.013 26.4 32.0 193 331-554 221-433 (618)
342 3kez_A Putative sugar binding 31.2 66 0.0023 30.4 5.6 35 487-521 191-225 (461)
343 3rau_A Tyrosine-protein phosph 29.5 3.2E+02 0.011 24.7 13.7 32 158-189 117-157 (363)
344 3mcx_A SUSD superfamily protei 29.4 66 0.0022 30.6 5.3 34 446-479 198-231 (477)
345 3iqc_A FLIS, flagellar protein 29.4 1.7E+02 0.0059 21.6 9.1 51 497-547 41-92 (131)
346 2r17_C Vacuolar protein sortin 29.1 2.9E+02 0.0098 24.1 28.1 225 88-315 21-271 (298)
347 3snx_A SUSD homolog, putative 28.3 79 0.0027 29.8 5.6 32 112-143 188-219 (460)
348 3hdx_A SUSD homolog, SUSD supe 28.1 84 0.0029 29.8 5.8 34 111-144 193-226 (478)
349 3lew_A SUSD-like carbohydrate 26.6 1E+02 0.0035 29.5 6.0 33 112-144 200-232 (495)
350 2wm9_A Dedicator of cytokinesi 26.2 4E+02 0.014 24.7 11.0 34 153-186 6-39 (428)
351 2ymb_A MITD1, MIT domain-conta 25.9 14 0.00049 31.1 0.0 45 69-114 21-65 (257)
352 2wm9_A Dedicator of cytokinesi 25.0 4.2E+02 0.014 24.6 10.5 76 450-525 11-121 (428)
353 3lew_A SUSD-like carbohydrate 24.8 1.6E+02 0.0056 28.0 7.1 33 405-437 200-232 (495)
354 3snx_A SUSD homolog, putative 24.3 1.4E+02 0.0047 28.2 6.4 33 446-478 187-219 (460)
355 3mcx_A SUSD superfamily protei 23.7 76 0.0026 30.1 4.6 35 487-521 197-231 (477)
356 3dza_A Uncharacterized putativ 23.5 2.8E+02 0.0097 22.1 8.7 113 71-186 35-178 (191)
357 1zb1_A BRO1 protein; AIP1, BRO 20.7 4.9E+02 0.017 23.8 11.9 120 71-190 123-289 (392)
358 2a9u_A Ubiquitin carboxyl-term 20.1 2.9E+02 0.0098 20.9 8.8 42 493-536 43-84 (144)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.6e-40 Score=317.28 Aligned_cols=385 Identities=18% Similarity=0.207 Sum_probs=345.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhh
Q 007930 76 KLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRAL 155 (584)
Q Consensus 76 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (584)
.+|..++..|+ +++|+..++++++. +|+...++..+|.++...|++++|+.++++++... +..+
T Consensus 4 ~~a~~~~~~g~-~~~A~~~~~~~~~~---------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~~- 67 (388)
T 1w3b_A 4 ELAHREYQAGD-FEAAERHCMQLWRQ---------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLLA- 67 (388)
T ss_dssp THHHHHHHHTC-HHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-
T ss_pred hHHHHHHHCCC-HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCch-
Confidence 46888999999 99999999999886 34456778899999999999999999999999764 2222
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCC
Q 007930 156 AKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGH 235 (584)
Q Consensus 156 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (584)
.++..+|.++...|++++|+..|++++.+ +|....++..+|.++...|++++|+..|+++++..|...
T Consensus 68 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~- 135 (388)
T 1w3b_A 68 ---EAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY- 135 (388)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-
Confidence 45999999999999999999999999998 788889999999999999999999999999998765432
Q ss_pred CCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 007930 236 SASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKAT 315 (584)
Q Consensus 236 ~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 315 (584)
.++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++++
T Consensus 136 -------~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 198 (388)
T 1w3b_A 136 -------CVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---- 198 (388)
T ss_dssp -------HHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred -------HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 45889999999999999999999998875 5667789999999999999999999999999998
Q ss_pred hcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007930 316 RGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMK 395 (584)
Q Consensus 316 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 395 (584)
.|....++..+|.++...|++++|+..+++++.+.. ....++..+|.++...|++++|+..|+++++
T Consensus 199 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP---------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 688889999999999999999999999999999853 2367889999999999999999999999998
Q ss_pred HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 007930 396 LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEE 475 (584)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (584)
..+.. ..++..+|.++...|++++|+.+|+++++. .+....++..+|.++...|++++|+.++++
T Consensus 266 ~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 266 LQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp TCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 75543 567889999999999999999999999986 233467899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 476 ARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 476 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
+++. .|+...++..+|.++...|++++|+.+|++++++ +|+...++.++|.++..+|+
T Consensus 331 al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 331 ALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred HHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHhHHHHHHHccC
Confidence 9987 7888899999999999999999999999999997 89999999999999988774
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.4e-39 Score=305.81 Aligned_cols=372 Identities=18% Similarity=0.215 Sum_probs=335.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRV 199 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (584)
.+|..++..|++++|+..++++++.. +++. .++..+|.++...|++++|+.++++++.. +|..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~ 66 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQE-----PDNT----GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL 66 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence 46888999999999999999998774 3333 34788999999999999999999999988 7888
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc
Q 007930 200 AETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN 279 (584)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 279 (584)
..++..+|.++...|++++|+..|++++++.|.. ..++..+|.++...|++++|+..|++++.. .|
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p 132 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF--------IDGYINLAAALVAAGDMEGAVQAYVSALQY------NP 132 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH------CT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Confidence 9999999999999999999999999999875433 345899999999999999999999998875 56
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
....++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..|++++.+..
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---- 200 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP---- 200 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT----
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----
Confidence 66778899999999999999999999999987 688889999999999999999999999999999852
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
....++..+|.++...|++++|+..+++++.+.+.. ..++..+|.++...|++++|+..|++++++
T Consensus 201 -----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 266 (388)
T 1w3b_A 201 -----NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-- 266 (388)
T ss_dssp -----TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred -----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 346789999999999999999999999999986654 677889999999999999999999999984
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.+....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++
T Consensus 267 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 267 ------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp ------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445678999999999999999999999999998 78888999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 520 KVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
++ +|+...++..+|.++...|++++|. ..++.++..+|+....
T Consensus 333 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~p~~~~a 375 (388)
T 1w3b_A 333 EV--------FPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPTFADA 375 (388)
T ss_dssp TS--------CTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTTCHHH
T ss_pred hc--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHHH
Confidence 87 7889999999999999999999999 8999999888875543
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-36 Score=302.63 Aligned_cols=433 Identities=12% Similarity=0.077 Sum_probs=346.1
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIG 148 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 148 (584)
.....+..++..+...|+ +++|+..+++++... |+. ..+..+|.+|...|++++|+..|++++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~---------p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 146 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQ-YKCAAFVGEKVLDIT---------GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY---- 146 (597)
T ss_dssp CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH---------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG----
T ss_pred HHHHHHHHHHHHHHHccC-chHHHHHHHHHHhhC---------CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc----
Confidence 456778899999999999 999999999998641 221 45678999999999999999999988643
Q ss_pred cCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH--------HHhCCCChHHHHHHHHHHHHHHHhCCHHHHH
Q 007930 149 KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQI--------EALGDSDPRVAETCRYLAEAHIQAMQFDEAE 220 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 220 (584)
+.++ .++..++.+|...|++++|+..|++...... .......+....++..+|.+|...|++++|+
T Consensus 147 --~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 147 --NRSS----ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp --GTCH----HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --ccch----hHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 1122 4588999999999999999999986322100 0000012456889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC---------------------------------------------------------------C
Q 007930 221 NLCKKILEIHREHGHS---------------------------------------------------------------A 237 (584)
Q Consensus 221 ~~~~~al~~~~~~~~~---------------------------------------------------------------~ 237 (584)
..|+++++..+..... .
T Consensus 221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 9999998765431100 0
Q ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc
Q 007930 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG 317 (584)
Q Consensus 238 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 317 (584)
.+....++..++.++...|++++|+..|++++.. .+....++..++.++...|++++|+..+++++..
T Consensus 301 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 368 (597)
T 2xpi_A 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR------ 368 (597)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------
Confidence 0122455667777777778888888777776643 2333445667777777888888888888777755
Q ss_pred CCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 318 EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 318 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
.|....++..+|.+|...|++++|+.+|++++++.. ....++..++.++...|++++|++.|++++...
T Consensus 369 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 369 --HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP---------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp --CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 567788999999999999999999999999998742 235788999999999999999999999998775
Q ss_pred HhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 007930 398 EDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEAR 477 (584)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 477 (584)
+.. ..++..+|.+|...|++++|+.+|+++++. .+....++..+|.++...|++++|+.+|++++
T Consensus 438 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 438 QGT-------HLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp TTC-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 543 457788999999999999999999999875 22235789999999999999999999999999
Q ss_pred HHHHHHhCCCCCch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHH
Q 007930 478 GVLEQECGSCHLDT-LGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGK 556 (584)
Q Consensus 478 ~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (584)
+...... .+|+. ..++..+|.++...|++++|+..|++++++ .|+...++..++.+|...|++++|. .
T Consensus 503 ~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~ 571 (597)
T 2xpi_A 503 LLVKKTQ--SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLAI-T 571 (597)
T ss_dssp HHHHHSC--CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred Hhhhccc--cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHH-H
Confidence 9865432 25553 789999999999999999999999999998 7888899999999999999999999 9
Q ss_pred HHHHHHhhhhhhhHH
Q 007930 557 SLENLLDSNAYRVKK 571 (584)
Q Consensus 557 ~l~~~~~~~~~~~~~ 571 (584)
.++.+++.+|+....
T Consensus 572 ~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 572 HLHESLAISPNEIMA 586 (597)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCChHH
Confidence 999999988876553
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=280.67 Aligned_cols=402 Identities=12% Similarity=0.089 Sum_probs=338.1
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhcc
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGK 149 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 149 (584)
.+..++.+|..++..|+ +++|+..|++++.. . |+ ..++..+|.++...|++++|+..++++++..
T Consensus 5 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~------~---p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 69 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKK-YDDAIKYYNWALEL------K---ED-PVFYSNLSACYVSVGDLKKVVEMSTKALELK---- 69 (514)
T ss_dssp HHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHH------C---CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhc------C---cc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----
Confidence 46789999999999999 99999999999986 2 22 6788899999999999999999999999874
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-----------------------h--------------
Q 007930 150 GSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA-----------------------L-------------- 192 (584)
Q Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~-------------- 192 (584)
+... .++..+|.++...|++++|+..|++++...... +
T Consensus 70 -p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 70 -PDYS----KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp -SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred -hHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3333 458899999999999999999999987652100 0
Q ss_pred ----------C------------------------CCChHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHhC-
Q 007930 193 ----------G------------------------DSDPRVAETCRYLAEAHIQ---AMQFDEAENLCKKILEIHREHG- 234 (584)
Q Consensus 193 ----------~------------------------~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~- 234 (584)
. -..|.....+..+|.++.. .|++++|+..++++++..+...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 0 0002336777888888876 8999999999999999543332
Q ss_pred -CCCC----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007930 235 -HSAS----LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGL 309 (584)
Q Consensus 235 -~~~~----~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 309 (584)
.+.. +..+.++..+|.++...|++++|+..+++++.. .+. ..++..+|.++...|++++|+..+++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 2222 556778999999999999999999999998875 344 8889999999999999999999999998
Q ss_pred HHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 007930 310 TVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKL 389 (584)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 389 (584)
.. .|....++..+|.++...|++++|+.++++++..... ...++..+|.++...|++++|+.+
T Consensus 298 ~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 298 KL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE---------NIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp TT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS---------CSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred hc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh---------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 86 5667788999999999999999999999999987533 246889999999999999999999
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh---hCCH
Q 007930 390 LQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ---LYRI 466 (584)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~ 466 (584)
++++++..+.. ..++..+|.++...|++++|+.++++++.......... ....++..+|.++.. .|++
T Consensus 361 ~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 361 FSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp HHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTHH
T ss_pred HHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCCH
Confidence 99999886554 35778999999999999999999999999765432211 113488999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 007930 467 NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERL 540 (584)
Q Consensus 467 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l 540 (584)
++|+.++++++.. .|....++..+|.++...|++++|..+|++++++ +|+...++..+
T Consensus 432 ~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~ 489 (514)
T 2gw1_A 432 IEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--------ARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------ccccHHHHHHH
Confidence 9999999999998 7888899999999999999999999999999998 78877777655
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-34 Score=291.04 Aligned_cols=369 Identities=16% Similarity=0.099 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC-----------------------------chhhhHHHHHHH
Q 007930 113 ELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS-----------------------------DRALAKFSGYMQ 163 (584)
Q Consensus 113 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------------------~~~~~~~~~~~~ 163 (584)
....+++.+|.+|...|++++|+..|+++++..+..... ..+......+..
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 357889999999999999999999999998864221000 000000012333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 007930 164 LGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAA 243 (584)
Q Consensus 164 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~ 243 (584)
++..|...|++++|+..|++++.. +....++..++.++...|++++|+.+|+++++..+....
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------- 340 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGL---------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD-------- 340 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTG---------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT--------
T ss_pred HHHHHcCcchHHHHHHHHHHhhcC---------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH--------
Confidence 366677888999999999888765 455778999999999999999999999999987665443
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccH
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSV 323 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 323 (584)
++..++.++...|++++|+..+++++.. .+....++..+|.+|...|++++|+.+|+++++. .|..
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~ 406 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDR------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQF 406 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCC
Confidence 3888999999999999999999988753 4556778899999999999999999999999987 6777
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
..++..++.++...|++++|+.+|++++..... ...++..++.++...|++++|+++|+++++..+..
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 474 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG---------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD--- 474 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT---------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Confidence 889999999999999999999999999987432 25688899999999999999999999999875443
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
..++..+|.++...|++++|+.+|+++++.....+.. +.....++..+|.++...|++++|+..++++++.
T Consensus 475 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 545 (597)
T 2xpi_A 475 ----PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN-EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL---- 545 (597)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc-hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence 5678899999999999999999999999987664432 2223688999999999999999999999999998
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
.|....++..+|.+|...|++++|..+|++++++ +|+...++..++.+|.
T Consensus 546 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 ----STNDANVHTAIALVYLHKKIPGLAITHLHESLAI--------SPNEIMASDLLKRALE 595 (597)
T ss_dssp ----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTC
T ss_pred ----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHh
Confidence 7888899999999999999999999999999998 8999999999998874
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.6e-33 Score=281.60 Aligned_cols=425 Identities=15% Similarity=0.121 Sum_probs=327.6
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIG 148 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 148 (584)
..+..++.+|..++..|+ +++|+..|++++.. +|....++..+|.+|...|++++|+..|+++++..
T Consensus 23 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 89 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKN-FNEAIKYYQYAIEL---------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--- 89 (537)
T ss_dssp HHHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhh---------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 357789999999999999 99999999999986 34457889999999999999999999999999874
Q ss_pred cCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 007930 149 KGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILE 228 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 228 (584)
+..+ .++..+|.++...|++++|+..|+ ++.. .|.....+ ...+...+...+|+..+++++.
T Consensus 90 --p~~~----~~~~~la~~~~~~g~~~~A~~~~~-~~~~--------~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~ 151 (537)
T 3fp2_A 90 --PDHS----KALLRRASANESLGNFTDAMFDLS-VLSL--------NGDFDGAS---IEPMLERNLNKQAMKVLNENLS 151 (537)
T ss_dssp --TTCH----HHHHHHHHHHHHHTCHHHHHHHHH-HHC----------------------CHHHHHHHHHHHHHHHHHCC
T ss_pred --CchH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhc--------CCCCChHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 458899999999999999999995 6655 23322221 2234445556778888888876
Q ss_pred HHHHhCCCCCHH-----------------------------HHHHHHHH--------HHHHHHhccHHHHHHHHHHHHHH
Q 007930 229 IHREHGHSASLE-----------------------------EAADRRLM--------ALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 229 ~~~~~~~~~~~~-----------------------------~a~~~~~l--------~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
..+.......+. .......+ +......|++++|+..+++++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp -------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 543322111110 00112222 22333345777777777766543
Q ss_pred HHHcCCcc----hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHH
Q 007930 272 MIANGQEN----EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347 (584)
Q Consensus 272 ~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 347 (584)
.++.+ ..+.++..+|.++...|++++|+..++++++. .|. ..++..+|.++...|++++|+.++
T Consensus 232 ---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 232 ---NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred ---CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHH
Confidence 22222 23667899999999999999999999999997 566 889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHH
Q 007930 348 ENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEA 427 (584)
Q Consensus 348 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 427 (584)
++++..... ...++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|
T Consensus 300 ~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 300 QKAVDLNPE---------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------VYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------SHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHH
Confidence 999988532 36789999999999999999999999999986654 35778999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc--
Q 007930 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL-- 505 (584)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 505 (584)
+.++++++.. .+....++..+|.++...|++++|+.+|+++++....... .......+..+|.++...
T Consensus 364 ~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 364 EAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp HHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHhh
Confidence 9999999986 2233568899999999999999999999999998644322 223334577889999999
Q ss_pred --------CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 506 --------GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 506 --------g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
|++++|+.+|++++++ +|+...++..+|.++..+|++++|. ..++.++...|.....
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAI-ELFEDSAILARTMDEK 498 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--CHHH
T ss_pred ccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCCcHHH
Confidence 9999999999999998 8888999999999999999999999 8999998877764443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-34 Score=284.42 Aligned_cols=397 Identities=16% Similarity=0.103 Sum_probs=334.6
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 007930 113 ELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL 192 (584)
Q Consensus 113 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (584)
..+.++..+|..++..|++++|+..|++++... ++ + .++..+|.++...|++++|+..++++++.
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~-~----~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 68 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED-P----VFYSNLSACYVSVGDLKKVVEMSTKALEL----- 68 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC-H----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc-H----HHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----
Confidence 357788999999999999999999999999874 21 2 45899999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC------------------------------------
Q 007930 193 GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS------------------------------------ 236 (584)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------------------ 236 (584)
+|....++..+|.++...|++++|+..|++++...+.....
T Consensus 69 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 145 (514)
T 2gw1_A 69 ---KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST 145 (514)
T ss_dssp ---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred ---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 78888999999999999999999999999998765311000
Q ss_pred -----------------------------------CCHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHc---
Q 007930 237 -----------------------------------ASLEEAADRRLMALVYEA---KADYESALEHLVLASMVMIAN--- 275 (584)
Q Consensus 237 -----------------------------------~~~~~a~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~--- 275 (584)
..+.....+..+|.++.. .|++++|+..+++++......
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 001125567778888776 899999999999998743221
Q ss_pred -CC----cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 276 -GQ----ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 276 -~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
++ .+....++..+|.++...|++++|+..++++++. .|. ..++..+|.++...|++++|+.+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 2667889999999999999999999999999987 566 899999999999999999999999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
+..... ...++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.+
T Consensus 297 ~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 297 LKLDSN---------NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-------IFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp HTTCTT---------CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-------SHHHHHHHHHTTTTTCHHHHHHH
T ss_pred hhcCcC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 887432 24688999999999999999999999999875543 35778999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH---cCC
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA---LGR 507 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~ 507 (584)
+++++... +....++..+|.++...|++++|+.++++++....... .......++..+|.++.. .|+
T Consensus 361 ~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 361 FSEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD--GIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp HHHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS--SCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred HHHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999852 22346889999999999999999999999999732211 111124589999999999 999
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 508 VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 508 ~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+++|+.++++++.+ +|....++..+|.++...|++++|. ..++.+++..|+....
T Consensus 431 ~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 431 FIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAI-TLFEESADLARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhccccHHH
Confidence 99999999999998 7888899999999999999999999 8999999888876554
No 8
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=277.58 Aligned_cols=413 Identities=14% Similarity=0.047 Sum_probs=298.0
Q ss_pred cCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHH
Q 007930 84 SGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQ 163 (584)
Q Consensus 84 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 163 (584)
.++ .+.++..+++.+....+.. +++..+..++.||.++..+|++++|+++|++|+++.+...+.......+.++.+
T Consensus 24 l~~-~~~~l~~~e~~~~~~~~~~---~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~n 99 (472)
T 4g1t_A 24 LME-GENSLDDFEDKVFYRTEFQ---NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGN 99 (472)
T ss_dssp TTT-TCCCHHHHHHHHHHHTTSC---C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 345 5667777777665543332 344457788999999999999999999999999998765443322222356899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 007930 164 LGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAM--QFDEAENLCKKILEIHREHGHSASLEE 241 (584)
Q Consensus 164 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (584)
+|.+|..+|++++|+.++++++.+.+...+..++..+.++..+|.++...| ++++|+.+|++++++.|...
T Consensus 100 la~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~------- 172 (472)
T 4g1t_A 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP------- 172 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH-------
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH-------
Confidence 999999999999999999999999988776666777888888888877654 79999999999999876433
Q ss_pred HHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----HcCChhHHHHHHHHHHHHHHH
Q 007930 242 AADRRLMALVYE---AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYM----SLCRFDEAIFSYQKGLTVFKA 314 (584)
Q Consensus 242 a~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~ 314 (584)
.++..++.++. ..++.++|++.+++++.+ .|....++..+|..+. ..|++++|+.++++++..
T Consensus 173 -~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--- 242 (472)
T 4g1t_A 173 -EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--- 242 (472)
T ss_dssp -HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH---
T ss_pred -HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---
Confidence 33566666644 456778899999999875 4555566666766554 457889999999999987
Q ss_pred hhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh--------------
Q 007930 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL-------------- 380 (584)
Q Consensus 315 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------- 380 (584)
.|....++..+|.+|...|++++|+..++++++..+ ....++..+|.+|...
T Consensus 243 -----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 243 -----APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP---------NNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp -----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------TCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred -----CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC---------ChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 788889999999999999999999999999999853 3467888888887653
Q ss_pred -----cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 007930 381 -----NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQ 455 (584)
Q Consensus 381 -----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 455 (584)
+.+++|+..+++++...+.. ..++..+|.++...|++++|+.+|++++.+. ..+.....++..
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~-----~~~~~~~~~~~~ 376 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNL-------FRVCSILASLHALADQYEEAEYYFQKEFSKE-----LTPVAKQLLHLR 376 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTT-------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----CCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCch-------hhhhhhHHHHHHHhccHHHHHHHHHHHHhcC-----CCChHHHHHHHH
Confidence 34567777888877776554 3356689999999999999999999998741 112223345666
Q ss_pred HHHHH-HhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 007930 456 MGLAC-LQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDID 534 (584)
Q Consensus 456 l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~ 534 (584)
+|.+. ...|++++|+.+|++++++ .|....... ....+...+++++.. +|.++
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i--------~~~~~~~~~----------~~~~l~~~~~~~l~~--------~p~~~ 430 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKI--------NQKSREKEK----------MKDKLQKIAKMRLSK--------NGADS 430 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHS--------CCCCHHHHH----------HHHHHHHHHHHHHHH--------CC-CT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--------CcccHHHHH----------HHHHHHHHHHHHHHh--------CCCCH
Confidence 66554 5779999999999999998 565433221 223455667777776 88899
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 535 DEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.++.+||.+|..+|++++|+ .+++.+++.++..+.
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~-~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQAD-EDSERGLESGSLIPS 465 (472)
T ss_dssp THHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCCc
Confidence 99999999999999999999 999999988776655
No 9
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=4e-33 Score=273.72 Aligned_cols=399 Identities=15% Similarity=0.050 Sum_probs=288.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 64 SLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 64 ~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
..+++..+..+..+|.++...|+ +++|+++|++|+++.+.......++..+.++.++|.+|..+|++++|+.++++++.
T Consensus 44 ~~~~~~~a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 44 FQNREFKATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp SCC---CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 33555667788899999999999 99999999999999888765555677888999999999999999999999999999
Q ss_pred HHHhccCCchhhhHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH---HhCCHHH
Q 007930 144 VVDIGKGSDRALAKFSGYMQLGDTCSSM--GLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHI---QAMQFDE 218 (584)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~ 218 (584)
+.+...+..++... .++..+|.++... ++|++|+.+|++++++ +|....++..++.++. ..++.++
T Consensus 123 i~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 123 VCEKFSSPYRIESP-ELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp HHHHSCCSSCCCCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HhHhcccccchhhH-HHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCchHHHH
Confidence 98876655443222 4577777766654 5799999999999998 6777777777777754 4577789
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 007930 219 AENLCKKILEIHREHGHSASLEEAADRRLMALVYE----AKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS 294 (584)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 294 (584)
|++.+++++++.+... .++..+|..+. ..|++++|+.++++++.. .+....++..+|.+|..
T Consensus 194 al~~~~~al~l~p~~~--------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDNQ--------YLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFYRR 259 (472)
T ss_dssp THHHHHHHHHHCSSCH--------HHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcch--------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHH
Confidence 9999999998754322 33555555444 457888999999998774 66777889999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc-------------------ccHHHHHHHHHHHHHHHh
Q 007930 295 LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI-------------------GKLRESKSYCENALRVCA 355 (584)
Q Consensus 295 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~ 355 (584)
.|++++|+..++++++. .|....++..+|.+|... +.+++|+..+++++.+..
T Consensus 260 ~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp TTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence 99999999999999998 788889999999988654 346778888888887743
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH-HHHhccHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVM-LYVVGRYGEARSSFESA 434 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a 434 (584)
. ...++..+|.++...|++++|+.+|++++.+.+. ......++..+|.+ +...|++++|+.+|+++
T Consensus 332 ~---------~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 332 N---------LFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp T---------TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred c---------hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 3467889999999999999999999999875321 22223445566654 45789999999999999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
+.+. +.... ..+....+...+++++.. +|..+.++..||.+|...|++++|+++
T Consensus 399 l~i~--------~~~~~----------~~~~~~~l~~~~~~~l~~--------~p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 399 VKIN--------QKSRE----------KEKMKDKLQKIAKMRLSK--------NGADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp HHSC--------CCCHH----------HHHHHHHHHHHHHHHHHH--------CC-CTTHHHHHHHHHHHHHHCC-----
T ss_pred HhcC--------cccHH----------HHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9851 11111 112234455667777777 788889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
|++|+++ .|..+.+...+|
T Consensus 453 y~kALe~--------~~~~p~a~~~~G 471 (472)
T 4g1t_A 453 SERGLES--------GSLIPSASSWNG 471 (472)
T ss_dssp ---------------------------
T ss_pred HHHHHhc--------CCCCCcHhhcCC
Confidence 9999998 555555555554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.2e-31 Score=261.59 Aligned_cols=396 Identities=16% Similarity=0.125 Sum_probs=296.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 007930 63 SSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSI 142 (584)
Q Consensus 63 ~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 142 (584)
.-..+|..+..++.+|..++..|+ +++|+..|++++.. .|....++..+|.++...|++++|+..|++++
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDG---------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh---------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344677788888889999999998 89999999988875 33346778888999999999999999999888
Q ss_pred HHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHhCCHHHH
Q 007930 143 EVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVA---ETCRYLAEAHIQAMQFDEA 219 (584)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A 219 (584)
+.. +... .++..+|.++...|++++|+..|++++.. .|... .++..++.++..
T Consensus 88 ~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~------- 143 (450)
T 2y4t_A 88 QLK-----MDFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSENEEKEAQSQLIKSDEM------- 143 (450)
T ss_dssp HHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHH-------
T ss_pred hcC-----CCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHH-------
Confidence 774 2222 44788888888899999999888888876 45444 555555444211
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChh
Q 007930 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 299 (584)
..+..+|.++...|++++|+..+++++.. .+....++..+|.++...|+++
T Consensus 144 -----------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~ 194 (450)
T 2y4t_A 144 -----------------------QRLRSQALNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIKEGEPR 194 (450)
T ss_dssp -----------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCGG
T ss_pred -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHCCCHH
Confidence 12556677788888888888888887764 4455677888899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH---------H
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG---------L 370 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~ 370 (584)
+|+..|+++++. .|....++..+|.++...|++++|+.++++++..... ....... .
T Consensus 195 ~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 195 KAISDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD------HKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp GGHHHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHHHH
Confidence 999999998887 5666788889999999999999999999998876422 1222111 2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH
Q 007930 371 TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450 (584)
Q Consensus 371 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 450 (584)
..+|.++...|++++|+.+|++++.+.+. .......++..+|.++...|++++|+.++++++.+ .+...
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~ 329 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPS---IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNV 329 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccH
Confidence 44599999999999999999999987543 23333567889999999999999999999999986 23346
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH------------HHHcC-----ChHHHHH
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT------------YDALG-----RVEDAIE 513 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~------------~~~~g-----~~~~A~~ 513 (584)
.++..+|.++...|++++|+.+|++++++ .|+...++..++.+ |..+| +.+++.+
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHH
Confidence 88999999999999999999999999998 78888899999955 44455 5667788
Q ss_pred HHHH-HHHHHHHHhCCCC--hhHHHHHHHHHHHHHHhchHHHHH
Q 007930 514 ILEY-ILKVREEKLGTAN--PDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 514 ~~~~-a~~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
.|++ ++........... .........++.+|..+|+.+++.
T Consensus 402 ~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 402 AYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 8886 5554111110000 113446677788888888777654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.3e-31 Score=261.30 Aligned_cols=385 Identities=17% Similarity=0.115 Sum_probs=303.8
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 007930 111 ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190 (584)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 190 (584)
+|....++..+|..+...|++++|+..|++++... +..+ .++..+|.++...|++++|+..|+++++.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 89 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIQL--- 89 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 56778899999999999999999999999999763 2222 45889999999999999999999999998
Q ss_pred HhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 191 ALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 191 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
+|....++..+|.++...|++++|+..|+++++..+.. .....++..++.++.
T Consensus 90 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~----------------- 142 (450)
T 2y4t_A 90 -----KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE-----NEEKEAQSQLIKSDE----------------- 142 (450)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH-----HHHHHHHHHHHHHHH-----------------
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHHHH-----------------
Confidence 67778899999999999999999999999998754321 111123444443321
Q ss_pred HHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 271 VMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 271 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
...+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++
T Consensus 143 -----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 143 -----------MQRLRSQALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAA 203 (450)
T ss_dssp -----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 223456788889999999999999999987 6778889999999999999999999999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc-----HHHHHHHHHHHHHHhccHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST-----IAGIEAQMGVMLYVVGRYG 425 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 425 (584)
+..... ...++..+|.++...|++++|+.++++++...+........ .......+|.++...|+++
T Consensus 204 ~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (450)
T 2y4t_A 204 SKLKND---------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 274 (450)
T ss_dssp HHHHCS---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 998633 36789999999999999999999999999875543110000 0011234499999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 426 EARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 426 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
+|+.+|++++.+. +..+.....++..+|.++...|++++|+.++++++++ .|....++..+|.++...
T Consensus 275 ~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 275 DATSKYESVMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp HHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHh
Confidence 9999999999852 2222223568899999999999999999999999998 788889999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH------------HHhc-----hHHHHHHHHHHHHHhhhhhh
Q 007930 506 GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL------------KETG-----RARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 506 g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~------------~~~g-----~~~~A~~~~l~~~~~~~~~~ 568 (584)
|++++|+.+|++++++ +|+...++..++.+. ..+| +.+++...+.+.++..+|+.
T Consensus 343 ~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred cCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999997 788888999999554 4444 34455634444466655553
Q ss_pred h------------HHHHHhHhhcCCC
Q 007930 569 V------------KKEVTKRRSGFGF 582 (584)
Q Consensus 569 ~------------~~~~~~~~~~~~~ 582 (584)
. ...+.++|..||+
T Consensus 415 ~~~~~~~~~a~~~~~~i~~ay~~L~d 440 (450)
T 2y4t_A 415 FQNEEEKKKAEKKFIDIAAAKEVLSD 440 (450)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHSSG
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 2 2246667777765
No 12
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-30 Score=251.21 Aligned_cols=344 Identities=17% Similarity=0.172 Sum_probs=301.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
.+.++..+|.++...|++++|+.+|++++... +.++.....++..+|.++...|++++|+.++++++.+....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 80 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-- 80 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--
Confidence 46677899999999999999999999999873 34444444679999999999999999999999999998765
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc----------------
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKAD---------------- 257 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~---------------- 257 (584)
.+.+....++..+|.++...|++++|+.++++++++.+... +....+.++..+|.++...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 44577889999999999999999999999999999999887 446677889999999999999
Q ss_pred ----HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHH
Q 007930 258 ----YESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADL 333 (584)
Q Consensus 258 ----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 333 (584)
+++|+.++.+++.+....++.+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.+
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999987753 345667799999999
Q ss_pred HHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 007930 334 YYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQ 413 (584)
Q Consensus 334 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 413 (584)
+...|++++|+.++++++.+... ..++.....++..+|.++...|++++|+.++++++.+.+.. +.......++..
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~ 312 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-NDRIGEGRACWS 312 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHh---CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 99999999999999999999876 34566778899999999999999999999999999999887 556667888999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 414 MGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
+|.++...|++++|+.++++++++....+. .+....++..+|.++...|+...+...+.
T Consensus 313 la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 999999999999999999999999888753 34567889999999999998754443333
No 13
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.2e-31 Score=253.55 Aligned_cols=343 Identities=16% Similarity=0.142 Sum_probs=299.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDP-RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA 237 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 237 (584)
..+..+|.++...|++++|+.+|++++.. .+.++ ....++..+|.++...|++++|+.++++++.+.+... +
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 82 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D 82 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--c
Confidence 45788999999999999999999999998 22233 3468999999999999999999999999999988776 4
Q ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC--------------------
Q 007930 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR-------------------- 297 (584)
Q Consensus 238 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------- 297 (584)
.+..+.++..+|.++...|++++|+.++++++.+....++......++..+|.++...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 567788899999999999999999999999999999888888889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 007930 298 FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIY 377 (584)
Q Consensus 298 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 377 (584)
+++|+.++++++.+..... +.+....++..+|.++...|++++|+.++++++.+... ..++.....++..+|.++
T Consensus 163 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---FGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHH
Confidence 9999999999999987764 45777889999999999999999999999999999877 345667788999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 007930 378 EALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMG 457 (584)
Q Consensus 378 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (584)
...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.++++++.+....+. .+....++..+|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la 314 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSLG 314 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHH
Confidence 99999999999999999999886 556667888999999999999999999999999999887653 345678899999
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 458 LACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.++...|++++|+.++++++++...... .+....++..+|.++...|+...+...+.+.
T Consensus 315 ~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 373 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 9999999999999999999999877644 5577889999999999999885544443333
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=6.2e-31 Score=262.85 Aligned_cols=391 Identities=13% Similarity=0.076 Sum_probs=304.2
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
.+|.....+..+|.++...|+ +++|+..+++++.. +|....++..+|.++...|++++|+..|+ ++...
T Consensus 54 ~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~ 122 (537)
T 3fp2_A 54 LDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEI---------KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLN 122 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--
T ss_pred hCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---------CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC
Confidence 367788999999999999999 99999999999986 34457789999999999999999999995 66554
Q ss_pred HhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC-----------------------------C
Q 007930 146 DIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDS-----------------------------D 196 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------------------~ 196 (584)
+.. ... ....+...+...+|+..+++++.......... +
T Consensus 123 ~~~-----~~~-------~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 123 GDF-----DGA-------SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred CCC-----ChH-------HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 221 111 11123334445677777777755421111111 1
Q ss_pred hHHHHHHHHHH--------HHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 197 PRVAETCRYLA--------EAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLA 268 (584)
Q Consensus 197 ~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a 268 (584)
+........++ ......|++++|+..++++++..+.... .....+.++..+|.++...|++++|+..++++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~-~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP-LRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch-hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 11111222222 2233445788888888888876554321 11234667999999999999999999999999
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 007930 269 SMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCE 348 (584)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 348 (584)
+.. .+. ..++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..++
T Consensus 270 ~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 270 INL------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 875 444 788999999999999999999999999988 67788899999999999999999999999
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHH
Q 007930 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEAR 428 (584)
Q Consensus 349 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 428 (584)
+++..... ...++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+
T Consensus 335 ~a~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 335 KAQSLNPE---------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-------PEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHHHHCTT---------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------THHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhCCHHHHH
Confidence 99998533 24678999999999999999999999999986554 457788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh----------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 429 SSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL----------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
.+|++++........... ....+..+|.++... |++++|+.+|+++++. +|....++..+
T Consensus 399 ~~~~~a~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l 468 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGL 468 (537)
T ss_dssp HHHHHHHHHHHHCSSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHHHHHHcCCcchhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 999999998766543221 234467788999999 9999999999999998 88888999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
|.+|...|++++|+.+|++++++
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999998
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=9.5e-31 Score=247.22 Aligned_cols=334 Identities=16% Similarity=0.136 Sum_probs=284.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..++.+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+..++++++..+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----- 70 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF----- 70 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----
Confidence 45889999999999999999999999998 67778999999999999999999999999999875432
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc---hHHHHHHHH------------HHHHHHcCChhHHHH
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN---EVAAIDVSI------------GNIYMSLCRFDEAIF 303 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~~ 303 (584)
..++..+|.++...|++++|+..+++++.. .+ ....++..+ |.++...|++++|+.
T Consensus 71 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 71 ---TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---chHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 256899999999999999999999998763 44 555555555 799999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCH
Q 007930 304 SYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH 383 (584)
Q Consensus 304 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 383 (584)
.++++++. .|....++..+|.++...|++++|+..+++++..... ...++..+|.++...|++
T Consensus 142 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 142 FLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD---------NTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC---------CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCH
Confidence 99999987 6777889999999999999999999999999987422 357899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccc-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Q 007930 384 EEALKLLQKAMKLLEDTPGYHST-----IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGL 458 (584)
Q Consensus 384 ~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 458 (584)
++|+..++++++..+........ .......+|.++...|++++|+..+++++... +........++..+|.
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERICH 280 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHH
Confidence 99999999999876554110000 01123356899999999999999999999862 2222333466788999
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 007930 459 ACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 459 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~ 538 (584)
++...|++++|+.+++++++. +|....++..+|.++...|++++|..+|++++++ +|+...+..
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~ 344 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIRE 344 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHH
Confidence 999999999999999999998 7888899999999999999999999999999998 888889999
Q ss_pred HHHHHHHHhchHH
Q 007930 539 RLAELLKETGRAR 551 (584)
Q Consensus 539 ~l~~~~~~~g~~~ 551 (584)
.++.++..+++.+
T Consensus 345 ~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 345 GLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999988776543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=8.5e-30 Score=240.68 Aligned_cols=336 Identities=16% Similarity=0.090 Sum_probs=279.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
+..+..+|.+++..|++++|+..|++++... +..+ .++..+|.++...|++++|+..++++++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIAL------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 5678899999999999999999999999874 2333 45899999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---HhCCCC----CHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 195 SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHR---EHGHSA----SLEEAADRRLMALVYEAKADYESALEHLVL 267 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~----~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~ 267 (584)
.|....++..+|.++...|++++|+..++++++..+ ...... .......+..+|.++...|++++|+..+++
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 677779999999999999999999999999998755 322110 000011233448999999999999999999
Q ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHH
Q 007930 268 ASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYC 347 (584)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 347 (584)
++.. .+....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+
T Consensus 146 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 146 ILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8875 4555688999999999999999999999999987 6778899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHHHHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Q 007930 348 ENALRVCAKPAPATAPEEIAN---------GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418 (584)
Q Consensus 348 ~~al~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (584)
+++++.... .+.... ....+|.++...|++++|+..+++++...+.. ......++..+|.++
T Consensus 212 ~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 212 RECLKLDQD------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV---AEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHH
T ss_pred HHHHhhCcc------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHH
Confidence 999988533 222211 23456899999999999999999999876542 333445677899999
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
...|++++|+.+++++++. .+....++..+|.++...|++++|+.+|++++++ .|+...++..+
T Consensus 283 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l 346 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGL 346 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHH
Confidence 9999999999999999986 2334678999999999999999999999999998 78888888888
Q ss_pred HHHHHHcC
Q 007930 499 AATYDALG 506 (584)
Q Consensus 499 a~~~~~~g 506 (584)
+.++...+
T Consensus 347 ~~~~~~~~ 354 (359)
T 3ieg_A 347 EKAQRLLK 354 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876554
No 17
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.98 E-value=5.1e-29 Score=239.90 Aligned_cols=314 Identities=18% Similarity=0.209 Sum_probs=279.7
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 007930 112 LELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA 191 (584)
Q Consensus 112 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (584)
+..+..+..+|..+...|++++|+.+|+++++.. +.++.....++..+|.++...|++++|+.++++++.+....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 4456777889999999999999999999999873 44444444679999999999999999999999999998775
Q ss_pred hCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc--------------
Q 007930 192 LGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKAD-------------- 257 (584)
Q Consensus 192 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~-------------- 257 (584)
.+++....++..+|.++...|++++|+.++++++++.+... +.+..+.++..+|.++...|+
T Consensus 120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 44678889999999999999999999999999999988876 456778889999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q 007930 258 ---YESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334 (584)
Q Consensus 258 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 334 (584)
+++|+.++++++.+....++.+....++..+|.++...|++++|+.++++++++..... +......++..+|.++
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999999999999999999987743 3455677999999999
Q ss_pred HHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007930 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQM 414 (584)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 414 (584)
...|++++|+.++++++.+... ..+......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l 349 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVE---LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDRIGEARACWSL 349 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHH
Confidence 9999999999999999999876 34556678899999999999999999999999999998887 5566677889999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
|.++...|++++|..++++++++.+.
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999997544
No 18
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.98 E-value=1.4e-28 Score=230.11 Aligned_cols=312 Identities=18% Similarity=0.206 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
...+...|..+...|++++|+.+|+++++.. +.++.....++..+|.++...|++++|+.++++++.+.... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 77 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 77 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence 4567788999999999999999999999873 34444444679999999999999999999999999998776 3
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc-----------------
Q 007930 195 SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKAD----------------- 257 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~----------------- 257 (584)
+.+....++..+|.++...|++++|+..+++++++.+... +....+.++..+|.++...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 4567789999999999999999999999999999998876 446667889999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q 007930 258 ---YESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334 (584)
Q Consensus 258 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 334 (584)
+++|+.++++++......++.+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.++
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHH
Confidence 99999999999999988888888999999999999999999999999999999987753 3456677999999999
Q ss_pred HHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Q 007930 335 YRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQM 414 (584)
Q Consensus 335 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 414 (584)
...|++++|+.++++++.+... ..++.....++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l 309 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSL 309 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 9999999999999999999876 34566778899999999999999999999999999998876 5566677888999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 415 GVMLYVVGRYGEARSSFESAVVKLRAS 441 (584)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~a~~~~~~~ 441 (584)
|.++...|++++|..++++++.+.+..
T Consensus 310 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999976543
No 19
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.98 E-value=8.8e-29 Score=238.21 Aligned_cols=313 Identities=16% Similarity=0.187 Sum_probs=278.9
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
.+.....+..+|..+...|++++|+.+|+++++..+. +....+.++..+|.++...|++++|+.++++++.+....
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3567778889999999999999999999999997332 334456789999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc----------------
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK---------------- 339 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------- 339 (584)
++.+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.++...|+
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 88999999999999999999999999999999999987764 457788999999999999999
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Q 007930 340 -LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418 (584)
Q Consensus 340 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (584)
+++|+.++++++.+... ..+++....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.++
T Consensus 198 ~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 198 ALTRAVEFYQENLKLMRD---LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHH
Confidence 99999999999998876 34557778899999999999999999999999999999886 55566677899999999
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
...|++++|+.++++++.+....+. ......++..+|.++...|++++|+.++++++.+...... .+....++..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l 349 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSL 349 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hHHHHHHHHHH
Confidence 9999999999999999999887643 3445788999999999999999999999999999877643 45667899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
|.+|...|++++|..+|++++++.
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999999999999999984
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=1.3e-27 Score=234.65 Aligned_cols=396 Identities=13% Similarity=0.097 Sum_probs=324.3
Q ss_pred CCcHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh----cCChhhHHHHHH
Q 007930 68 PDLGPFLLKLARETIS----SGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCS----LGRFEEAVPVLE 139 (584)
Q Consensus 68 ~~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 139 (584)
+..+..++.+|..+.. .++ +++|+.+|+++.+. . ...+++.||.+|.. .+++++|+.+|+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQ--------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT--------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHC--------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4567889999999988 788 99999999999863 1 25688899999999 999999999999
Q ss_pred HHHHHHHhccCCchhhhHHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH---
Q 007930 140 RSIEVVDIGKGSDRALAKFSGYMQLGDTCSS----MGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQ--- 212 (584)
Q Consensus 140 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--- 212 (584)
++.+. .++ .+++.+|.+|.. .+++++|+.+|+++.+. ....++..+|.+|..
T Consensus 104 ~a~~~-------~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 104 KAALK-------GLP----QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp HHHHT-------TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred HHHHC-------CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCC
Confidence 99753 122 347889999998 89999999999998764 246788999999998
Q ss_pred -hCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 213 -AMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA----KADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 213 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
.+++++|+.+|+++.+. . ...++..+|.+|.. .+++++|+.+|+++... ....++..
T Consensus 163 ~~~d~~~A~~~~~~a~~~----~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~ 224 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQ----G------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------GDELGQLH 224 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT----T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC----C------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHH
Confidence 88999999999999864 1 13568999999998 89999999999998752 23567889
Q ss_pred HHHHHHH----cCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHhcCCC
Q 007930 288 IGNIYMS----LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR----IGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 288 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
+|.+|.. .+++++|+.+|+++++. ....++..+|.+|.. .+++++|+.+|+++.+..
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----- 289 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----- 289 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-----
Confidence 9999997 89999999999998764 235688899999998 899999999999997541
Q ss_pred CCChHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc---cHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEAL-----NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG---RYGEARSSF 431 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 431 (584)
...++..+|.+|... +++++|+.+|+++.+. +. ..++..+|.+|...| ++++|+.+|
T Consensus 290 ------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 290 ------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----GD----ATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp ------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----CC----HHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 246888999999998 8999999999999864 11 457789999999866 899999999
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH---
Q 007930 432 ESAVVKLRASGESKSAFFGIVLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA--- 504 (584)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--- 504 (584)
+++++. . ...+++.+|.+|.. .+++++|+.+|+++++. ....++.+||.+|..
T Consensus 355 ~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 355 RKAAAK-------G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCC
Confidence 999873 1 25789999999999 89999999999999875 236799999999999
Q ss_pred -cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 505 -LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 505 -~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
.+++++|..+|+++++.. ++.|....+..+++.++... .+.|. ...+..++..++.....
T Consensus 415 ~~~d~~~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~~--~~~a~-~~a~~~~~~~~~~~~~~ 475 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND-----MNLFGTENRNITEKKLTAKQ--LQQAE-LLSQQYIEKYAPEAWAR 475 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHHH--HHHHH-HHHHHHHHHHCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHhH--HHHHH-HHHHHHHHHHHHHHHHH
Confidence 899999999999999972 11266888999999887653 34444 33444454445444433
No 21
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.97 E-value=8.2e-28 Score=224.92 Aligned_cols=312 Identities=16% Similarity=0.179 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc
Q 007930 199 VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278 (584)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 278 (584)
....+...|..+...|++++|+.+++++++..+. +....+.++..+|.++...|++++|+.++++++......++.
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 79 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc
Confidence 3456778899999999999999999999997322 334456789999999999999999999999999999988888
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc-------------------
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK------------------- 339 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 339 (584)
+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.++...|+
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 89999999999999999999999999999999987754 345667899999999999999
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Q 007930 340 -LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML 418 (584)
Q Consensus 340 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (584)
+++|+.++++++.+.+. ..+.+....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.++
T Consensus 158 ~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHH
Confidence 99999999999998776 34567778899999999999999999999999999998886 55666677899999999
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
...|++++|+.++++++.+....+. +.....++..+|.++...|++++|+.++++++.+...... .+....++..+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l 309 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSL 309 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHH
Confidence 9999999999999999998877543 3456788999999999999999999999999999877644 45667799999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
|.+|...|++++|..++++++++..+
T Consensus 310 a~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998543
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=8.7e-29 Score=230.76 Aligned_cols=301 Identities=15% Similarity=0.156 Sum_probs=260.9
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 197 PRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG 276 (584)
Q Consensus 197 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 276 (584)
+.....+..+|..+...|++++|+..++++++..+..... +..++.++...|++++|+..+++++..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--------~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 85 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASC--------LPVHIGTLVELNKANELFYLSHKLVDL----- 85 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTT--------HHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhh--------HHHHHHHHHHhhhHHHHHHHHHHHHHh-----
Confidence 3345677889999999999999999999999887665533 778889999999999999999998874
Q ss_pred CcchHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 277 QENEVAAIDVSIGNIYMSLC-RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
.+....++..+|.++...| ++++|+.+++++++. .|....++..+|.++...|++++|+.++++++....
T Consensus 86 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 86 -YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp -CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred -CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 4556678899999999999 999999999999987 577788899999999999999999999999999864
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
. ....+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++
T Consensus 157 ~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 157 G---------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp T---------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred c---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 23567779999999999999999999999876554 5788899999999999999999999999
Q ss_pred HHHHHcCCCCC-chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 436 VKLRASGESKS-AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 436 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
......+.... +....++..+|.++...|++++|+.++++++++ .|....++..+|.++...|++++|..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHH
Confidence 98766543322 334578999999999999999999999999998 777788999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HHhchHH
Q 007930 515 LEYILKVREEKLGTANPDIDDEKERLAELL-KETGRAR 551 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 551 (584)
|++++++ +|+...++..++.++ ...|+.+
T Consensus 293 ~~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 293 FHTALGL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 9999997 788899999999998 4555543
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=4.1e-26 Score=223.99 Aligned_cols=353 Identities=14% Similarity=0.065 Sum_probs=300.3
Q ss_pred HHHHHHHHHHHHHh----cCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 007930 114 LVMSLHMLAAIYCS----LGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSS----MGLLDRSVWCYESGL 185 (584)
Q Consensus 114 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al 185 (584)
.+.+++.+|.+|.. .+++++|+.+|+++.+. .++ .+++.+|.+|.. .+++++|+.+|+++.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 106 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------GYT----PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA 106 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 36788899999999 89999999999999864 122 458899999999 999999999999997
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH----hcc
Q 007930 186 EIQIEALGDSDPRVAETCRYLAEAHIQ----AMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEA----KAD 257 (584)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~----~g~ 257 (584)
+. ....+++.||.+|.. .+++++|+.+|+++.+.. ...++..+|.+|.. .++
T Consensus 107 ~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 107 LK----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----------RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp HT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCC
T ss_pred HC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCC
Confidence 64 245778899999998 899999999999997641 13568999999998 889
Q ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHH
Q 007930 258 YESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS----LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADL 333 (584)
Q Consensus 258 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 333 (584)
+++|+.+|+++... ....++..+|.+|.. .+++++|+.+|+++.+. ....++..+|.+
T Consensus 167 ~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~ 228 (490)
T 2xm6_A 167 YVMAREWYSKAAEQ--------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----------GDELGQLHLADM 228 (490)
T ss_dssp HHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHH
Confidence 99999999998752 236788999999998 89999999999999864 235688999999
Q ss_pred HHH----cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 334 YYR----IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA----LNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 334 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
|.. .+++++|+.+|+++++.. ...++..+|.+|.. .+++++|+.+|+++.+. +.
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~~-- 290 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQG-----------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----GN-- 290 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----TC--
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----CC--
Confidence 997 899999999999998642 24688899999998 89999999999998753 11
Q ss_pred cHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC---CHHHHHHHHHHHH
Q 007930 406 TIAGIEAQMGVMLYVV-----GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY---RINEATELFEEAR 477 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~ 477 (584)
..++..+|.+|... +++++|+.+|+++.+. . ...+++.+|.++...| ++++|+.+|++++
T Consensus 291 --~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 291 --SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp --HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 45777899999998 9999999999999873 1 2468899999999866 8999999999998
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hch
Q 007930 478 GVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE----TGR 549 (584)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~ 549 (584)
+. ....+++.||.+|.. .+++++|+.+|+++++. ....++.+||.+|.. .++
T Consensus 359 ~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 359 AK----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp HT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCCCCC
Confidence 75 346799999999999 89999999999999884 236789999999999 899
Q ss_pred HHHHHHHHHHHHHhhhh
Q 007930 550 ARNRKGKSLENLLDSNA 566 (584)
Q Consensus 550 ~~~A~~~~l~~~~~~~~ 566 (584)
+++|. ..++.+++.++
T Consensus 419 ~~~A~-~~~~~A~~~~~ 434 (490)
T 2xm6_A 419 YVQAW-AWFDTASTNDM 434 (490)
T ss_dssp HHHHH-HHHHHHHHHHC
T ss_pred HHHHH-HHHHHHHHCCC
Confidence 99999 88888888773
No 24
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.96 E-value=3e-26 Score=217.71 Aligned_cols=353 Identities=13% Similarity=0.080 Sum_probs=278.8
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HHHHHHhcCChhhHH-----------H
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHM-LAAIYCSLGRFEEAV-----------P 136 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~-----------~ 136 (584)
+.+...+......+..++ +++|....+++.+.+..+. .+++....+.. ........++++.+. .
T Consensus 10 ~~v~~~l~~w~~~i~~~~-~~~A~~l~~~i~~~~~~~~---~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~ 85 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFS-IPDAEYLRREIKQELDQME---EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD 85 (383)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence 456677788888889999 9999999999988776543 22333322222 223333445555555 5
Q ss_pred HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCH
Q 007930 137 VLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQF 216 (584)
Q Consensus 137 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 216 (584)
.+++.-.... ..........++..|.++...|++++|+.+|++++.+.... ++.+..+.++..+|.++...|++
T Consensus 86 ~~~~i~~~~~----~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~ 159 (383)
T 3ulq_A 86 LLLEIDKKQA----RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQT 159 (383)
T ss_dssp HHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCC----CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCH
Confidence 5555332211 11222222346679999999999999999999999886553 34556889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 007930 217 DEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC 296 (584)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 296 (584)
++|+.++++++++.+...+ .....+.++..+|.++...|++++|+.++++++.+....++.+..+.++.++|.+|..+|
T Consensus 160 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 9999999999999988763 256778899999999999999999999999999999999888999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 007930 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI 376 (584)
Q Consensus 297 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 376 (584)
++++|+.++++++++.+... +.+....++.++|.++...|++++|+.++++++.+.... .+ +.....+..+|.+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~-~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GD-VIYLSEFEFLKSL 312 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TC-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CC-HHHHHHHHHHHHH
Confidence 99999999999999987764 227789999999999999999999999999999998663 22 2333347789999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 377 YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
+...|++ ..+++++...... +..+....++..+|.+|...|++++|..++++++.+.+.+..
T Consensus 313 ~~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 313 YLSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HTSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HhCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999995 4455555555555 556666788889999999999999999999999998776644
No 25
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.96 E-value=6.6e-26 Score=215.38 Aligned_cols=349 Identities=11% Similarity=-0.008 Sum_probs=268.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHH--HHHHHhcCChHHHH-----------HHH
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQL--GDTCSSMGLLDRSV-----------WCY 181 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~-----------~~~ 181 (584)
.....+-...+...+++++|...++++.+............. ++.+ .......++++.+. ..+
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~----y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHL----YYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHH----HHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHH----HHHHHHHHHHHHHhhcCcccccccccccchhhHH
Confidence 334444456677899999999999999877655432222221 2221 22223334444444 444
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHH
Q 007930 182 ESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESA 261 (584)
Q Consensus 182 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A 261 (584)
++.-...... +.......++.+|.++...|++++|+.++++++++..... +....+.++..+|.+|...|++++|
T Consensus 88 ~~i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~~~~~~A 162 (383)
T 3ulq_A 88 LEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK--DRIEKAEFFFKMSESYYYMKQTYFS 162 (383)
T ss_dssp HHHHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4432221110 0011223556699999999999999999999999877655 4566788999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccH
Q 007930 262 LEHLVLASMVMIANGQ-ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL 340 (584)
Q Consensus 262 ~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 340 (584)
+.++.+++.+....++ .+..+.++.++|.++...|++++|+.++++++++.++.. +.+..+.++.++|.+|..+|++
T Consensus 163 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 163 MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCH
Confidence 9999999999998877 778899999999999999999999999999999988763 4567788999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 007930 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV 420 (584)
Q Consensus 341 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (584)
++|+.++++++++.+.. .+.+....++.++|.++...|++++|+.++++++.+.+.. ++...... +..+|.++..
T Consensus 241 ~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~-~~~l~~~~~~ 315 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEES---NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA-GDVIYLSE-FEFLKSLYLS 315 (383)
T ss_dssp HHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHH-HHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHHH-HHHHHHHHhC
Confidence 99999999999998763 2335668999999999999999999999999999998876 33333333 5679999999
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
.|++ ..+++++..++... ..+....++..+|.+|...|++++|..++++++++.+++..
T Consensus 316 ~~~~----~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 316 GPDE----EAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp SCCH----HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred CCcH----HHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9995 44555555555442 34556788999999999999999999999999999766544
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=8.8e-29 Score=234.51 Aligned_cols=312 Identities=14% Similarity=0.098 Sum_probs=248.3
Q ss_pred HHHhcCChHHHHH-HHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 007930 167 TCSSMGLLDRSVW-CYESGLEIQIEALGDSDPR-VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAAD 244 (584)
Q Consensus 167 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~ 244 (584)
++...|+|++|+. .|++++.+. +++|. ....++.+|.++...|++++|+..++++++..+.. ..+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~ 100 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH--------MEA 100 (368)
T ss_dssp ------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--------HHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------HHH
Confidence 5667799999999 999888662 22222 35678899999999999999999999999864432 356
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 324 (584)
+..+|.++...|++++|+..+++++.. .+....++..+|.++...|++++|+..+++++... |...
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~ 166 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLEL------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--------PAYA 166 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--------TTTG
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCcH
Confidence 899999999999999999999999875 45567789999999999999999999999999862 2222
Q ss_pred HHH----------------HHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHH
Q 007930 325 SIF----------------IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALK 388 (584)
Q Consensus 325 ~~~----------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 388 (584)
..+ ..++.++ ..|++++|+.++++++...... ....++..+|.++...|++++|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS-------IDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp GGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS-------CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc-------ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 222 2466666 8999999999999999985331 036788999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH
Q 007930 389 LLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE 468 (584)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (584)
++++++.+.+.. ..++..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++++
T Consensus 239 ~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 239 CFTAALSVRPND-------YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHH
Confidence 999999986554 568889999999999999999999999986 23346889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 469 ATELFEEARGVLEQECGS---CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 469 A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
|+.+|++++.+.....++ .++....++..+|.++..+|++++|..+++++++.+.+.++.
T Consensus 304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 366 (368)
T 1fch_A 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGL 366 (368)
T ss_dssp HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCC
Confidence 999999999985433111 123447899999999999999999999999999998877664
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=5.4e-28 Score=229.07 Aligned_cols=313 Identities=15% Similarity=0.109 Sum_probs=243.4
Q ss_pred HHHHhCCHHHHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 209 AHIQAMQFDEAEN-LCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 209 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
++...|++++|+. .+++++.+.+.... ..+..++.+|.++...|++++|+..+++++.. .|....++..
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 103 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPL----RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEAWQY 103 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTT----TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcc----cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence 5667799999999 99988876544321 11234789999999999999999999999873 5667788999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC-----
Q 007930 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA----- 362 (584)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 362 (584)
+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..+++++...........
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 999999999999999999999998 6778889999999999999999999999999987543210000
Q ss_pred --hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 363 --PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 363 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
.......+..++.++ ..|++++|+.++++++...+... ...++..+|.++...|++++|+.+|++++.+
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 246 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--- 246 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 000011222566666 89999999999999999866521 2577889999999999999999999999986
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007930 441 SGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK 520 (584)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 520 (584)
.+....++..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+.+|++++.
T Consensus 247 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 247 -----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2334678999999999999999999999999998 788889999999999999999999999999999
Q ss_pred HHHHHhC---CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 521 VREEKLG---TANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 521 ~~~~~~~---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+.....+ ..++....++..++.++..+|++++|. ...+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l 357 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADARDL 357 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHTTCH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHHHHH
Confidence 8543311 122344889999999999999999998 4444333
No 28
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=222.92 Aligned_cols=294 Identities=14% Similarity=0.106 Sum_probs=255.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHH
Q 007930 161 YMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLE 240 (584)
Q Consensus 161 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (584)
+..+|..+...|++++|+..+++++.. +|....++..++.++...|++++|+..++++++..+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------ 90 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP------ 90 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH------
Confidence 778899999999999999999999987 677778888899999999999999999999998755433
Q ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 241 EAADRRLMALVYEAKA-DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
.++..+|.++...| ++++|+.++++++.. .+....++..+|.++...|++++|+..++++++.
T Consensus 91 --~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------- 154 (330)
T 3hym_B 91 --VSWFAVGCYYLMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-------- 154 (330)
T ss_dssp --HHHHHHHHHHHHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred --HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 45899999999999 999999999998763 5556678999999999999999999999999998
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.|....++..+|.++...|++++|+.++++++..... ...++..+|.++...|++++|+.++++++...+.
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE---------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 5666677888999999999999999999999987532 3678999999999999999999999999999876
Q ss_pred CCCCc--ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 007930 400 TPGYH--STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEAR 477 (584)
Q Consensus 400 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 477 (584)
..... +....++..+|.++...|++++|+.++++++++. +....++..+|.++...|++++|+.+|++++
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 53321 3335678899999999999999999999999862 2335789999999999999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHH-HHcCChH
Q 007930 478 GVLEQECGSCHLDTLGVYSNLAATY-DALGRVE 509 (584)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 509 (584)
++ .|+...++..++.++ ...|+.+
T Consensus 298 ~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 298 GL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred cc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 98 888889999999998 4555543
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=3.5e-26 Score=216.13 Aligned_cols=277 Identities=14% Similarity=0.066 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
..++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++++ .|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~ 131 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPN 131 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC
Confidence 45889999999999999999999999875 5566889999999999999999999999999998 677
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA-PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP 401 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 401 (584)
...++..+|.++...|++++|+.++++++++.+....... .......+..+|.++...|++++|+.++++++...+...
T Consensus 132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 211 (365)
T 4eqf_A 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence 8899999999999999999999999999997543100000 001234455679999999999999999999999865521
Q ss_pred CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 007930 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLE 481 (584)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 481 (584)
...++..+|.++...|++++|+.+|++++++ .+....++..+|.++...|++++|+.+|++++++
T Consensus 212 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 276 (365)
T 4eqf_A 212 -----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-- 276 (365)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 1567889999999999999999999999986 2334678999999999999999999999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHHHHhchHHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD----IDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+|....++..+|.+|...|++++|+.+|++++++.....++.++. ...++..++.++..+|+.+.+.
T Consensus 277 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 277 ------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred ------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 888899999999999999999999999999999976554433322 3678999999999999999887
No 30
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.95 E-value=1.7e-24 Score=204.98 Aligned_cols=347 Identities=14% Similarity=0.087 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH--HHHHhcCChhhHH---------HHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLA--AIYCSLGRFEEAV---------PVLE 139 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~---------~~~~ 139 (584)
+..++..-...+..++ +++|....+++...+..+.. +.... .++.+- ......+.+..+. ..++
T Consensus 12 v~~~l~~wy~~i~~~~-~~~A~~l~~~i~~~~~~~~~---~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 12 VGVKINEWYKMIRQFS-VPDAEILKAEVEQDIQQMEE---DQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHGGGBCC---CHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHhcc---cHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 3334444444567888 99999999998887665531 22222 222222 2222234444443 4444
Q ss_pred HHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHH
Q 007930 140 RSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEA 219 (584)
Q Consensus 140 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 219 (584)
+.- ......+.......++..|..+...|++++|+..|++++.+.... .+.+..+.++..+|.++...|++++|
T Consensus 87 ~i~----~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A 160 (378)
T 3q15_A 87 TIE----TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVS 160 (378)
T ss_dssp HHH----GGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHh----ccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHH
Confidence 322 111122222333457889999999999999999999999886553 34567889999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChh
Q 007930 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFD 299 (584)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 299 (584)
+.++++++++.+...+ .....+.++..+|.++...|++++|++++++++.+....++....+.++.++|.+|...|+++
T Consensus 161 ~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 161 MYHILQALDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 9999999999987653 234678899999999999999999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA 379 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 379 (584)
+|+.++++++++.+... ++....++..+|.++...|++++|+.++++++++.... + + +.....+..++.++..
T Consensus 240 ~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~-~-~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR--S-H-KFYKELFLFLQAVYKE 312 (378)
T ss_dssp HHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT--C-C-SCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--C-C-HHHHHHHHHHHHHHhC
Confidence 99999999999987764 56669999999999999999999999999999997663 1 1 2233456788888888
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS 441 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 441 (584)
.++. ..+.+++...... +..+....++..+|.+|...|++++|..+|++++++.+.+
T Consensus 313 ~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 313 TVDE----RKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp SCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcH----HHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 8883 3334444444443 4455567788899999999999999999999999976553
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=3.9e-26 Score=215.79 Aligned_cols=286 Identities=14% Similarity=0.074 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhC
Q 007930 114 LVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALG 193 (584)
Q Consensus 114 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (584)
....++.+|..+...|++++|+.+|++++... +... .++..+|.++...|++++|+..|++++++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 128 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-----PGDA----EAWQFLGITQAENENEQAAIVALQRCLEL------ 128 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence 34567899999999999999999999999875 2232 45899999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 194 DSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASL--EEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 194 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
+|....++..+|.++...|++++|+..+++++++.+........ ..+..+..+|.++...|++++|+.++++++..
T Consensus 129 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 129 --QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 67788999999999999999999999999999998876643111 12344567799999999999999999999875
Q ss_pred HHHcCCcch--HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 007930 272 MIANGQENE--VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349 (584)
Q Consensus 272 ~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 349 (584)
.+. ...++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+|++
T Consensus 207 ------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 207 ------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp ------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333 5678899999999999999999999999998 677888999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC-----cccHHHHHHHHHHHHHHhccH
Q 007930 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY-----HSTIAGIEAQMGVMLYVVGRY 424 (584)
Q Consensus 350 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~ 424 (584)
++++.. ....++..+|.++...|++++|+.+|++++++.++..+. ......++..++.++...|+.
T Consensus 273 al~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 273 ALEIQP---------GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHCT---------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHhcCC---------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 999853 236789999999999999999999999999999886442 112356788999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007930 425 GEARSSFESAVVKLR 439 (584)
Q Consensus 425 ~~A~~~~~~a~~~~~ 439 (584)
+.+.....+.+..++
T Consensus 344 ~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 344 ELFQAANLGDLDVLL 358 (365)
T ss_dssp HHHHHHHTTCCGGGT
T ss_pred HHHHHHHHhhHHHHH
Confidence 999888877665443
No 32
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.95 E-value=1.9e-24 Score=204.75 Aligned_cols=339 Identities=13% Similarity=0.100 Sum_probs=256.9
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--HHHhCCHHHHH---------HHHHHHHHHHHHhCCC
Q 007930 168 CSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEA--HIQAMQFDEAE---------NLCKKILEIHREHGHS 236 (584)
Q Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~---------~~~~~al~~~~~~~~~ 236 (584)
+...+++++|...++++....... ..+.... .++.+-.. ....+.+..+. ..+++.-......
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~--- 95 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQM--EEDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL--- 95 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGB--CCCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH---
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHh--cccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC---
Confidence 477899999999999886654332 1233332 33333221 12222322222 3333321111111
Q ss_pred CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhh
Q 007930 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 237 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 316 (584)
+.......++..|..+...|++++|+.++++++.+....++.+..+.++..+|.+|...|++++|+.+++++++++....
T Consensus 96 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 175 (378)
T 3q15_A 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP 175 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST
T ss_pred ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC
Confidence 12233446788999999999999999999999998888888889999999999999999999999999999999987653
Q ss_pred cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 317 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
+. .+..+.++.++|.++...|++++|+.++++++++.++ ..+....+.++.++|.+|..+|++++|+.++++++.+
T Consensus 176 ~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 176 LY-SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD---IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp TC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Cc-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 21 3467889999999999999999999999999999876 3455677889999999999999999999999999998
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
.... +.+ ....++..+|.++...|++++|+.++++++.+....++. .....+..++.++...++. ..+.++
T Consensus 252 ~~~~-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~ly~~~~~~----~~~~~a 322 (378)
T 3q15_A 252 SREK-VPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK---FYKELFLFLQAVYKETVDE----RKIHDL 322 (378)
T ss_dssp HHHH-CGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS---CHHHHHHHHHHHHSSSCCH----HHHHHH
T ss_pred HHhh-CCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhCCCcH----HHHHHH
Confidence 8765 333 337889999999999999999999999999987665432 2344567888888888883 333344
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
+..+++.. ..+.....+..+|.+|...|++++|..+|++++++.+++..
T Consensus 323 l~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 323 LSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 44433322 25567788899999999999999999999999999776544
No 33
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.1e-24 Score=198.09 Aligned_cols=285 Identities=18% Similarity=0.167 Sum_probs=231.9
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 007930 60 IDESSLDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLE 139 (584)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 139 (584)
....+.++|..+..+..+|..++..|+ +++|+.++++++++.+... +...+....++..+|.++...|++++|+.+++
T Consensus 16 ~q~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (311)
T 3nf1_A 16 FQGGGYEIPARLRTLHNLVIQYASQGR-YEVAVPLCKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKDAANLLN 93 (311)
T ss_dssp CSSSCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH-CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCcchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345566889999999999999999999 9999999999999988775 23457788999999999999999999999999
Q ss_pred HHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHH
Q 007930 140 RSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEA 219 (584)
Q Consensus 140 ~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 219 (584)
+++.+.....+.+.+.. ..++..+|.++...|++++|+.++++++++.....+.+++....++..+|.++...|++++|
T Consensus 94 ~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 94 DALAIREKTLGKDHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp HHHHHHHHHHCTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCCChHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876544443332 36799999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC---C------cchHHHHHHHHHH
Q 007930 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG---Q------ENEVAAIDVSIGN 290 (584)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~------~~~~~~~~~~la~ 290 (584)
+.++++++++.......+.+....++..+|.++...|++++|+.++++++....... . .......+..++.
T Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (311)
T 3nf1_A 173 EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKG 252 (311)
T ss_dssp HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcC
Confidence 999999999988876666788888999999999999999999999999988754321 1 1123344455566
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
.+...+.+.++...+.++... .+....++..+|.+|...|++++|+.++++++++.+
T Consensus 253 ~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 253 KQKDGTSFGEYGGWYKACKVD--------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp -----CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHhhcCCC--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 666777788888888877765 688899999999999999999999999999999864
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=5.1e-25 Score=204.91 Aligned_cols=269 Identities=16% Similarity=0.089 Sum_probs=231.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
..++.+|..+...|++++|+..+++++.. .+....++..+|.++...|++++|+.+++++++. .|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~ 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA------APEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcC
Confidence 44789999999999999999999998874 4556778899999999999999999999999998 677
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH-------------H-HH-HHHHhcCHHHHH
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE-------------I-SA-IYEALNEHEEAL 387 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-------------l-a~-~~~~~g~~~~A~ 387 (584)
...++..+|.++...|++++|+.++++++...... ...+.. + +. ++...|++++|+
T Consensus 88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY---------EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT---------TTC--------------------CCTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 78899999999999999999999999999875432 112222 2 44 588899999999
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHH
Q 007930 388 KLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRIN 467 (584)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (584)
.+++++++..+.. ..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|+++
T Consensus 159 ~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 159 TLLHAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp HHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHH
Confidence 9999999886554 577889999999999999999999999986 2334678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh------------HHH
Q 007930 468 EATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD------------IDD 535 (584)
Q Consensus 468 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~------------~~~ 535 (584)
+|+.+++++++. .|....++..+|.++...|++++|+.++++++.+ +|. ...
T Consensus 224 ~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~ 287 (327)
T 3cv0_A 224 EALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--------QVGGTTPTGEASREATRS 287 (327)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HTTSCC-----CCTHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccccccccchhhcCHH
Confidence 999999999998 7888899999999999999999999999999998 455 789
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 536 EKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
++..++.++..+|++++|. ..++.++...+
T Consensus 288 ~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~ 317 (327)
T 3cv0_A 288 MWDFFRMLLNVMNRPDLVE-LTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHH-HHTTCCSHHHH
T ss_pred HHHHHHHHHHhcCCHHHHH-HHHHHHHHhcc
Confidence 9999999999999999999 66665555444
No 35
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.5e-24 Score=196.96 Aligned_cols=280 Identities=20% Similarity=0.176 Sum_probs=230.4
Q ss_pred hCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 192 LGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 192 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
.+.++|....++..+|.++...|++++|+.++++++++.....+...+..+.++..+|.++...|++++|+.++++++..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35668899999999999999999999999999999999888776667888899999999999999999999999999998
Q ss_pred HHHc--CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 007930 272 MIAN--GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCEN 349 (584)
Q Consensus 272 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 349 (584)
.... ++.+....++..+|.++...|++++|+.++++++++.....+.+.+....++..+|.++...|++++|+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8776 67788899999999999999999999999999999998887777888999999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC----C----CcccHHHHHHHHHHHHHHh
Q 007930 350 ALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP----G----YHSTIAGIEAQMGVMLYVV 421 (584)
Q Consensus 350 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~----~~~~~~~~~~~l~~~~~~~ 421 (584)
++.+..... +.+.+....++..+|.++...|++++|+.+++++++..+... . ........+..++..+...
T Consensus 179 a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 179 ALEIYQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 999977642 455677889999999999999999999999999998865420 0 1111233344455556666
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 007930 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480 (584)
Q Consensus 422 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 480 (584)
+.+.+|...+.++.. ..+....++..+|.++...|++++|+.+|++++++.
T Consensus 258 ~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 258 TSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 777777777777766 356678899999999999999999999999999983
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=3.9e-25 Score=205.69 Aligned_cols=277 Identities=15% Similarity=0.117 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
.....++.+|..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+..+++++..
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 84 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER--------EEAWRSLGLTQAENEKDGLAIIALNHARML------ 84 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 345678899999999999999999999999875432 356889999999999999999999999875
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHH--------------HH-HHHHcccHHH
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL--------------AD-LYYRIGKLRE 342 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~ 342 (584)
.+....++..+|.++...|++++|+..++++++. .|.....+..+ +. ++...|++++
T Consensus 85 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 85 DPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--------QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------STTTTTC--------------------CCTTSHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence 4555778999999999999999999999999886 23333333333 55 5888999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc
Q 007930 343 SKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG 422 (584)
Q Consensus 343 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 422 (584)
|+.+++++++.... ...++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|
T Consensus 157 A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 157 CRTLLHAALEMNPN---------DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-------AQLWNKLGATLANGN 220 (327)
T ss_dssp HHHHHHHHHHHSTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcC
Confidence 99999999988532 36789999999999999999999999999886544 567889999999999
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc------------
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD------------ 490 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------ 490 (584)
++++|+.+++++++. .+....++..+|.++...|++++|+.++++++.+ .|.
T Consensus 221 ~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~ 284 (327)
T 3cv0_A 221 RPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--------QVGGTTPTGEASREA 284 (327)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HTTSCC-----CCTH
T ss_pred CHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccccccccchhhc
Confidence 999999999999985 2334678999999999999999999999999998 444
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
...++..+|.++..+|++++|...++++++.+...++.
T Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 322 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGL 322 (327)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhH
Confidence 78899999999999999999999999999987776553
No 37
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.94 E-value=6.7e-23 Score=194.11 Aligned_cols=312 Identities=17% Similarity=0.094 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCc
Q 007930 199 VAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQE 278 (584)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 278 (584)
...++..+|.++...|++++|+..+++++...+.. +....+.++..+|.++...|++++|+..+++++.+....++.
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 45677888999999999999999999999865321 233456678999999999999999999999999998888877
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
.....++..+|.++...|++++|+.++++++.+.....+..++....++.++|.++...|++++|..++++++.+....
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~- 168 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY- 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-
Confidence 7778889999999999999999999999999998877654456788899999999999999999999999999997653
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH-STIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
+ ++....++..+|.++...|++++|..++++++.+.+.. +.. .........++.++...|++++|..++++++..
T Consensus 169 -~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 169 -Q--PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp -C--GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred -C--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 1 22356788999999999999999999999999887654 222 111222224556688999999999999988752
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
. ..........+..+|.++...|++++|...+++++........ .+....++..+|.++...|++++|...+++
T Consensus 245 ~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 245 E----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp C----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred C----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1 1111222346788999999999999999999999998766422 234456889999999999999999999999
Q ss_pred HHHHHHH
Q 007930 518 ILKVREE 524 (584)
Q Consensus 518 a~~~~~~ 524 (584)
++.+...
T Consensus 319 al~~~~~ 325 (373)
T 1hz4_A 319 ALKLANR 325 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.9e-23 Score=185.82 Aligned_cols=235 Identities=17% Similarity=0.144 Sum_probs=211.9
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
..+..+..+|.++...|++++|+.+|+++++. . ....++..+|.++...|++++|+.++++++.+.+..
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-- 71 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-- 71 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--
Confidence 34678899999999999999999999999998 3 556789999999999999999999999999998663
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
..+.+....++..+|.++...|++++|+.++++++.+.+. +.++...|++++|+..+++++.
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~--- 133 (258)
T 3uq3_A 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------------ADILTKLRNAEKELKKAEAEAY--- 133 (258)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------------hHHHHHHhHHHHHHHHHHHHHH---
Confidence 3345555889999999999999999999999999987432 4578888999999999999988
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
..+....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++
T Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 134 -----VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35667889999999999999999999999999998 78888999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 520 KVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
++ +|+...++..+|.++..+|++++|. ..++.++...
T Consensus 201 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~ 237 (258)
T 3uq3_A 201 EK--------DPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKD 237 (258)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred Hh--------CHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhC
Confidence 98 7888999999999999999999999 8899988877
No 39
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.93 E-value=1.5e-22 Score=191.72 Aligned_cols=314 Identities=12% Similarity=0.005 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh
Q 007930 113 ELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEAL 192 (584)
Q Consensus 113 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (584)
....++..+|.++...|++++|+.++++++...+ ...+.....++..+|.++...|++++|+..+++++.+.+..
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 86 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH- 86 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-
Confidence 3467788899999999999999999999998652 22233334568899999999999999999999999997763
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 193 GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 193 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
.+......++..+|.++...|++++|+.++++++++.+......++..+.++..+|.++...|++++|..++++++...
T Consensus 87 -~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 87 -DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 2223456678899999999999999999999999999887765456677889999999999999999999999999876
Q ss_pred HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHH--HHHHHHHHHHcccHHHHHHHHHHH
Q 007930 273 IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASI--FIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 273 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
...+... ...++..+|.++...|++++|..++++++.+..... .+..... ...++.++...|++++|..+++++
T Consensus 166 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 166 SSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---YHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp TTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 6554433 567889999999999999999999999998854421 1211122 224556688999999999999998
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 351 LRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
+.... +.. ......+..++.++...|++++|...+++++...+.. +.......++..+|.++...|++++|...
T Consensus 242 ~~~~~----~~~-~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 242 AKPEF----ANN-HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp CCCCC----TTC-GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCC----Ccc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 75431 111 1223357889999999999999999999999998875 44445556888999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 007930 431 FESAVVKLRASG 442 (584)
Q Consensus 431 ~~~a~~~~~~~~ 442 (584)
+++++.+....+
T Consensus 316 l~~al~~~~~~g 327 (373)
T 1hz4_A 316 LLDALKLANRTG 327 (373)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHhcccc
Confidence 999999876543
No 40
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=3.1e-22 Score=198.53 Aligned_cols=429 Identities=12% Similarity=-0.003 Sum_probs=304.3
Q ss_pred CCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 66 DNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 66 ~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
.+|.....+..++.. ...|+ +++|...|++++.. .|.....+..++..+...|++++|+..|++++...
T Consensus 8 ~~P~~~~~w~~l~~~-~~~~~-~~~a~~~~e~al~~---------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQNQP-IDKARKTYERLVAQ---------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp HCTTCHHHHHHHHHH-HHSSC-HHHHHHHHHHHHTT---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred hCCCCHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 467888888888884 67888 99999999999985 45567788899999999999999999999999764
Q ss_pred HhccCCchhhhHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH---------hCC
Q 007930 146 DIGKGSDRALAKFSGYMQLGD-TCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQ---------AMQ 215 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~ 215 (584)
+ +. ..+..++. .....|++++|.+.+.++.+......|. ++....+|...+..... .|+
T Consensus 77 -----p-~~----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 77 -----L-HI----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM-EIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp -----C-CH----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTT-STTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred -----C-Ch----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 2 11 22555553 4456788888877443333333222332 33445666666666554 789
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHHHHHHcCC-----
Q 007930 216 FDEAENLCKKILEIHREHGHSASLEEAADRRLMALV-------------YEAKADYESALEHLVLASMVMIANGQ----- 277 (584)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~-------------~~~~g~~~~A~~~~~~a~~~~~~~~~----- 277 (584)
+++|..+|+++++. |.. . ....+...... ....+++..|...+............
T Consensus 146 ~~~a~~~y~~al~~-P~~----~--~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 146 ITAVRRVYQRGCVN-PMI----N--IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp HHHHHHHHHHHTTS-CCT----T--HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HHHHHHHHHHHHhc-hhh----h--HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 99999999999972 211 1 11122222111 12346677777776654333222221
Q ss_pred cch-------HHHHHHHHHHHHHHc----CCh----hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH------
Q 007930 278 ENE-------VAAIDVSIGNIYMSL----CRF----DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR------ 336 (584)
Q Consensus 278 ~~~-------~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------ 336 (584)
.+. ....+.......... ++. .+++..|++++.. .|....++..+|.++..
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhchhhh
Confidence 111 123333332222221 232 3778899999987 57888999999999986
Q ss_pred -cccHH-------HHHHHHHHHHH-HHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccH
Q 007930 337 -IGKLR-------ESKSYCENALR-VCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTI 407 (584)
Q Consensus 337 -~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 407 (584)
.|+++ +|+..|++++. +. |.....+..++.++...|++++|...|++++++.+.. .
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~---------p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~ 355 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLL---------KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID------P 355 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTC---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC------H
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhC---------cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC------c
Confidence 79987 89999999886 43 2346789999999999999999999999999863321 1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA-CLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
..++..++.++...|++++|...|+++++. ++.....+...+.+ +...|++++|..+|+++++.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~------- 420 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------- 420 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-------
Confidence 347888999999999999999999999873 12122344444444 34689999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD-IDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
.|+...++..++.++...|+.++|..+|++++.. .+.+|+ ....+..........|+.+.+. ...+.++...
T Consensus 421 -~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e~~~G~~~~~~-~~~~r~~~~~ 493 (530)
T 2ooe_A 421 -YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAF 493 (530)
T ss_dssp -HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHHHHSSCHHHHH-HHHHHHHHHT
T ss_pred -CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHC
Confidence 6777889999999999999999999999999985 223453 3457777788888999999998 7777777776
Q ss_pred hhh
Q 007930 566 AYR 568 (584)
Q Consensus 566 ~~~ 568 (584)
|+.
T Consensus 494 p~~ 496 (530)
T 2ooe_A 494 REE 496 (530)
T ss_dssp HHH
T ss_pred chh
Confidence 643
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=4.6e-24 Score=198.66 Aligned_cols=255 Identities=9% Similarity=-0.021 Sum_probs=224.3
Q ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHhh
Q 007930 238 SLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR-FDEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 238 ~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~ 316 (584)
.+....++..+|.++...|++++|+..+++++.+ .|....++.++|.++..+|+ +++|+..|++++.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----- 161 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----- 161 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----
Confidence 3445567899999999999999999999999986 77888999999999999997 99999999999998
Q ss_pred cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 317 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
.|....+++++|.++..+|++++|+.+|++++++..+ ...+|.++|.++...|++++|+.+|++++++
T Consensus 162 ---~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~---------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 162 ---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK---------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999998633 4689999999999999999999999999999
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHH-hccHHHH-----HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC--CHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYV-VGRYGEA-----RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY--RINE 468 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~ 468 (584)
.+.. ..+++++|.++.. .|.+++| +.+|++++.+ .|....+|+++|.++...| ++++
T Consensus 230 ~P~~-------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 230 DVRN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp CTTC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGGCHH
T ss_pred CCCC-------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccchHH
Confidence 8776 7788999999999 5555888 5889999986 3445689999999999988 6899
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HHHHHHHhCCCChhHHHHHH
Q 007930 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG--------R-VEDAIEILEYI-LKVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 469 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-~~~~~~~~~~~~p~~~~~~~ 538 (584)
|++.++++ +. .|+...++..+|.+|..+| + +++|+.+|+++ +++ +|.....|.
T Consensus 295 a~~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~r~~~w~ 357 (382)
T 2h6f_A 295 LLNQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTIRKEYWR 357 (382)
T ss_dssp HHHHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGGGHHHHH
T ss_pred HHHHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------CchhHHHHH
Confidence 98888776 43 7788899999999999985 2 58899999888 776 899999999
Q ss_pred HHHHHHHHh
Q 007930 539 RLAELLKET 547 (584)
Q Consensus 539 ~l~~~~~~~ 547 (584)
.++..+..+
T Consensus 358 ~~~~~l~~~ 366 (382)
T 2h6f_A 358 YIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887765
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.2e-23 Score=184.73 Aligned_cols=254 Identities=14% Similarity=0.134 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 240 EEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 240 ~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
..+..+..+|.++...|++++|+.++++++... ....++..+|.++...|++++|+.++++++++..... ++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~ 74 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-AD 74 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-cc
Confidence 346679999999999999999999999998762 3356889999999999999999999999999865432 12
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.+....++..+|.++...|++++|+.++++++.+... +.++...|++++|+..+++++...+.
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~~~~~~a~~~~~~~~~~~~~ 137 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----------------ADILTKLRNAEKELKKAEAEAYVNPE 137 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----------------hHHHHHHhHHHHHHHHHHHHHHcCcc
Confidence 2334789999999999999999999999999997422 35677889999999999999886554
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+++++++.
T Consensus 138 ~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 138 K-------AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp H-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3 678889999999999999999999999986 2334678999999999999999999999999998
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAEL 543 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~ 543 (584)
.|....++..+|.++...|++++|..+|++++++..+... .|....++..++.+
T Consensus 203 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 --------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA 256 (258)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence 7888899999999999999999999999999999654432 37777777776654
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=8.8e-24 Score=196.78 Aligned_cols=245 Identities=9% Similarity=0.018 Sum_probs=217.9
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHh
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK-LRESKSYCENALRVCA 355 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 355 (584)
..+....++..+|.++...|++++|+..+++++.+ +|....+++++|.++..+|+ +++|+.+|++++.+..
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence 36678889999999999999999999999999998 79999999999999999997 9999999999999863
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
+ ...+|+++|.++..+|++++|+..|++++++.+.. ..++.++|.++..+|++++|+.+|++++
T Consensus 164 ~---------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 164 K---------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp T---------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred C---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3 47899999999999999999999999999998776 7889999999999999999999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHh-hCCHHHH-----HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC--C
Q 007930 436 VKLRASGESKSAFFGIVLNQMGLACLQ-LYRINEA-----TELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG--R 507 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~ 507 (584)
++ .+....+|+++|.++.. .|.+++| +.+|++++.+ +|+...++.++|.++...| +
T Consensus 228 ~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 228 KE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGG
T ss_pred Hh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccc
Confidence 96 44567899999999999 5665888 5999999999 8999999999999999988 6
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc--------h-HHHHHHHHHHHH-HhhhhhhhHH
Q 007930 508 VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG--------R-ARNRKGKSLENL-LDSNAYRVKK 571 (584)
Q Consensus 508 ~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~-~~~A~~~~l~~~-~~~~~~~~~~ 571 (584)
+++|++.++++ +. +|+...++..+|.+|..+| + +++|+ ..++.+ ++.+|.+...
T Consensus 292 ~~~a~~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~-~~~~~l~~~~DP~r~~~ 355 (382)
T 2h6f_A 292 YPNLLNQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL-ELCEILAKEKDTIRKEY 355 (382)
T ss_dssp CHHHHHHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH-HHHHHHHHTTCGGGHHH
T ss_pred hHHHHHHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH-HHHHHHHHHhCchhHHH
Confidence 88998888765 43 7888999999999999985 3 58888 888888 8888876553
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=6.3e-24 Score=191.73 Aligned_cols=263 Identities=13% Similarity=0.039 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcch
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE 280 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 280 (584)
..+..+|.++...|++++|+..++++++..|.... ++..+|.++...|++++|+..+++++.. ..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------IYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKA 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------THHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhH
Confidence 46778999999999999999999999988765543 3899999999999999999999998762 233444
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 360 (584)
...++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++..
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------ 138 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------ 138 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS------
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC------
Confidence 5778999999999999999999999999998 67778899999999999999999999999998773
Q ss_pred CChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHH
Q 007930 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGR---YGEARSSFESAVVK 437 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~ 437 (584)
+....++..+|......+++++|+.+++++++..+.. ...+..+|.++...|+ +++|+..+++++++
T Consensus 139 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 139 ---TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 2336788999945555669999999999999987665 5678889999999999 99999999999998
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC
Q 007930 438 LRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG 506 (584)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 506 (584)
.....+........++..+|.++...|++++|+.+|++++++ +|+...++..++.+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcccc
Confidence 755433212234578999999999999999999999999999 8888888888877765543
No 45
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.92 E-value=3.5e-23 Score=188.06 Aligned_cols=269 Identities=16% Similarity=0.138 Sum_probs=223.0
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 007930 168 CSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRL 247 (584)
Q Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 247 (584)
....|++++|+.+|++++++..+..+.++|....++..+|.++...|++++|+.++++++++.....+.+.+..+.++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45679999999999999999999988888999999999999999999999999999999999988765677888999999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH
Q 007930 248 MALVYEAKADYESALEHLVLASMVMIAN--GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS 325 (584)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 325 (584)
+|.++...|++++|+.++.+++...... .+++....++.++|.++...|++++|+.++++++++.....+++.+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999999987765 44678899999999999999999999999999999998888777888999
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
++..+|.++...|++++|+.++++++.+......+...+.....+..++..+...+....+. .+..+...........+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA-PYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhcCCCCH
Confidence 99999999999999999999999999986542222233344556667777776655554443 35555555555545667
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
....++..+|.+|...|++++|+.++++++++
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77889999999999999999999999999864
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=7.9e-24 Score=191.09 Aligned_cols=251 Identities=15% Similarity=0.113 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
..+...|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++... .+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~ 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV------NA 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS------CT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc------Cc
Confidence 45678999999999999999999999987 56677789999999999999999999999999832 22
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
......++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.+|++++..
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 33346789999999999999999999999999987655 467889999999999999999999999884
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR---VEDAIEILEYIL 519 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~ 519 (584)
.+....++..+|......+++++|+.+|++++++ .|....++..+|.++...|+ +++|+..|++++
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 3445688999995555566999999999999998 78888999999999999999 999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 520 KVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
++.....++..+....++..+|.++...|++++|. ..++.++..+|+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD-AAWKNILALDPTNKKA 257 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCccHHHH
Confidence 98654332222335689999999999999999999 9999999988876553
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=1e-23 Score=203.33 Aligned_cols=373 Identities=14% Similarity=0.107 Sum_probs=262.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCCh---hhHHHHHHHHHHHHHhccCC
Q 007930 75 LKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRF---EEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 75 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~ 151 (584)
..+|..++..|+ +++|+.+|+++.+. + ...+++.+|.+|...|++ ++|+.+|+++++.
T Consensus 7 ~~la~~~~~~g~-~~~A~~~~~~aa~~------g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------- 67 (452)
T 3e4b_A 7 QRLANEALKRGD-TVTAQQNYQQLAEL------G-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------- 67 (452)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH------T-----CCTGGGTCC--------------------------------
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHC------C-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------
Confidence 467889999999 99999999999764 1 234667899999999999 9999999999854
Q ss_pred chhhhHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMG-----LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
++ .+++.+|.++...+ ++++|+.+|+++++. + + ..+++.||.+|...+...++...++..
T Consensus 68 -~~----~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-----g--~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~ 132 (452)
T 3e4b_A 68 -SP----RAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-----G--E---GNTLIPLAMLYLQYPHSFPNVNAQQQI 132 (452)
T ss_dssp --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-----T--C---SSCHHHHHHHHHHCGGGCTTCCHHHHH
T ss_pred -CH----HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-----C--C---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 11 34788999777666 889999999999874 1 2 238889999999888776665555554
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC---ChhHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC---RFDEAIF 303 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~ 303 (584)
....+... ..+++.+|.+|...+.++++............. .++. +++.+|.+|...| ++++|+.
T Consensus 133 ~~a~~~g~-------~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--~~~~---a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 133 SQWQAAGY-------PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--TTDI---CYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp HHHHHHTC-------TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--TCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCC-------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--CCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence 44443322 235889999999999766666553333222111 2222 8899999999999 9999999
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH-H-
Q 007930 304 SYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI----GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI-Y- 377 (584)
Q Consensus 304 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~- 377 (584)
+|+++.+. .+..+..++++|.+|... +++++|+.+|+++. .. ...+++++|.+ +
T Consensus 201 ~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g---------~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 201 QMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG---------YPASWVSLAQLLYD 260 (452)
T ss_dssp HHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG---------STHHHHHHHHHHHH
T ss_pred HHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC---------CHHHHHHHHHHHHh
Confidence 99999886 566777779999999765 79999999999987 22 25788999998 4
Q ss_pred -HHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHcCCCCCchHHH
Q 007930 378 -EALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG-----RYGEARSSFESAVVKLRASGESKSAFFGI 451 (584)
Q Consensus 378 -~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 451 (584)
...+++++|+.+|+++.+. + ...+++++|.+|. .| ++++|+.+|+++. . . ...
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g---~~~ 319 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------R---EVA 319 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------T---CHH
T ss_pred CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------C---CHH
Confidence 5688999999999998853 2 1567789999998 66 9999999999987 1 1 257
Q ss_pred HHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHH
Q 007930 452 VLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 452 ~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~ 523 (584)
+++++|.+|.. ..++++|+.+|+++.+. ....+.++||.+|.. ..++.+|..+|+++.+.
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-- 387 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN----------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ-- 387 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT----------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh----------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--
Confidence 89999999887 34999999999999864 234688999999985 46899999999999874
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHh--chHHHHH
Q 007930 524 EKLGTANPDIDDEKERLAELLKET--GRARNRK 554 (584)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~ 554 (584)
.++ .+...++.+...+ ++..+|.
T Consensus 388 -----g~~---~a~~~l~~l~~~~~~~~~~~a~ 412 (452)
T 3e4b_A 388 -----DTP---EANDLATQLEAPLTPAQRAEGQ 412 (452)
T ss_dssp -----CCH---HHHHHHHHHHTTCCHHHHHHHH
T ss_pred -----CCH---HHHHHHHHHHHhCCHHHHHHHH
Confidence 233 3445555554333 3444554
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=2.4e-23 Score=179.77 Aligned_cols=198 Identities=18% Similarity=0.208 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
..++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++++.+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P------ 70 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP------ 70 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Confidence 457789999999999999999999999987 789999999999999999999999999999999853
Q ss_pred ChHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEAL-----------NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSS 430 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (584)
....++..+|.++... |++++|+..+++++++.|+. ..++..+|.++...|++++|+..
T Consensus 71 ---~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 71 ---RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------APLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp ---TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCChHHHHHH
Confidence 3467899999999999 99999999999999997765 67888999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED 510 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 510 (584)
|++++++. ....++..+|.++...|++++|+..|++++++ +|+...++..+|.++...|++++
T Consensus 141 ~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 141 LKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC------
T ss_pred HHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHH
Confidence 99999972 23678999999999999999999999999999 88899999999999999999999
Q ss_pred HHHHHHHHHH
Q 007930 511 AIEILEYILK 520 (584)
Q Consensus 511 A~~~~~~a~~ 520 (584)
|+..|+++-.
T Consensus 204 A~~~~~~~~~ 213 (217)
T 2pl2_A 204 AARAAALEHH 213 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=3.2e-23 Score=178.97 Aligned_cols=199 Identities=20% Similarity=0.170 Sum_probs=168.6
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
|..+.++..+|.++...|++++|+..|+++++... ....++..+|.++...|++++|+..+++++++.|+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP---------QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS---------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 34456889999999999999999999999998753 346889999999999999999999999999997766
Q ss_pred CCCcccHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHH
Q 007930 401 PGYHSTIAGIEAQMGVMLYVV-----------GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEA 469 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (584)
..++..+|.++... |++++|+..|++++++ .|....++..+|.++...|++++|
T Consensus 73 -------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 73 -------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp -------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHH
Confidence 67888999999999 9999999999999996 344568899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 470 TELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 470 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
+..|++++++ . +...++..+|.++...|++++|+..|++++++ +|+...++.++|.++..+|+
T Consensus 138 ~~~~~~al~~--------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 138 EASLKQALAL--------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHH--------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhc--------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccC
Confidence 9999999999 6 77889999999999999999999999999998 89999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 007930 550 ARNRKGKSLENL 561 (584)
Q Consensus 550 ~~~A~~~~l~~~ 561 (584)
+++|+ ..++.+
T Consensus 201 ~~~A~-~~~~~~ 211 (217)
T 2pl2_A 201 AEEAA-RAAALE 211 (217)
T ss_dssp ------------
T ss_pred HHHHH-HHHHHH
Confidence 99999 555543
No 50
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.91 E-value=3.6e-22 Score=181.38 Aligned_cols=268 Identities=19% Similarity=0.160 Sum_probs=219.6
Q ss_pred HHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 007930 125 YCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCR 204 (584)
Q Consensus 125 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (584)
....|++++|+.+|++++++.....+.+++.. ..++..+|.++...|++++|+.++++++.+.....+.+++....++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDV-ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 45689999999999999999987765554433 36799999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc--CCcchHH
Q 007930 205 YLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN--GQENEVA 282 (584)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~ 282 (584)
.+|.++...|++++|+.++++++.+.....+.+.+....++..+|.++...|++++|+.++++++...... ++.+...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999999999888776778889999999999999999999999999999987655 4477888
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhc-CCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRG-EDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
.++..+|.++...|++++|+.++++++++...... ...+.....+..++..+...+....+.. +..+....... ..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~ 246 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKAC--KV 246 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CC--CC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhc--CC
Confidence 99999999999999999999999999998665432 2244555666777777766655554443 44455544442 45
Q ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
.++....++..+|.++...|++++|+.++++++++
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66788899999999999999999999999999864
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=6.9e-23 Score=197.49 Aligned_cols=353 Identities=13% Similarity=0.050 Sum_probs=249.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHhCCCC
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLL---DRSVWCYESGLEIQIEALGDSD 196 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~ 196 (584)
.+|..+...|++++|+.+|+++.+.. ++ .+++.+|.+|...|++ ++|+.+|+++++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g-------~~----~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------- 67 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG-------YS----EAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-------CC----TGGGTCC----------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-------CH----HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------
Confidence 57899999999999999999987641 12 2367899999999998 9999999999854
Q ss_pred hHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 197 PRVAETCRYLAEAHIQAM-----QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 197 ~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
...+++.+|.++...+ ++++|+.+|+++++. ... .+++.+|.+|...+..+++...++.....
T Consensus 68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~--------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a 135 (452)
T 3e4b_A 68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEG--------NTLIPLAMLYLQYPHSFPNVNAQQQISQW 135 (452)
T ss_dssp -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCS--------SCHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCH--------HHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 3467889999776666 889999999999873 122 14889999999888766554444433222
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc---cHHHHHHHHH
Q 007930 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG---KLRESKSYCE 348 (584)
Q Consensus 272 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~ 348 (584)
... ....+.+.+|.+|...+.++++............. .++. +++.+|.+|...| ++++|+.+|+
T Consensus 136 ~~~-----g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 136 QAA-----GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDI---CYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp HHH-----TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTT---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHC-----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHH---HHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 211 22457789999999999888877764443333211 1233 8899999999999 9999999999
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH-H--HHh
Q 007930 349 NALRVCAKPAPATAPEEIANGLTEISAIYEAL----NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVM-L--YVV 421 (584)
Q Consensus 349 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~ 421 (584)
++.+.... .+..++++|.+|... +++++|+.+|+++. +.. ..+++++|.+ + ...
T Consensus 204 ~aa~~g~~---------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~-------~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 204 AGVSRGTV---------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY-------PASWVSLAQLLYDFPEL 264 (452)
T ss_dssp HHHHTTCS---------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-------THHHHHHHHHHHHSGGG
T ss_pred HHHHCCCH---------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-------HHHHHHHHHHHHhCCCC
Confidence 99887422 245668899999765 79999999999987 443 4677899998 4 578
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Q 007930 422 GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY-----RINEATELFEEARGVLEQECGSCHLDTLGVYS 496 (584)
Q Consensus 422 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 496 (584)
+++++|+.+|+++.+. . ...+++++|.+|. .| ++++|+.+|+++. . ....+++
T Consensus 265 ~d~~~A~~~~~~Aa~~--------g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----------g~~~A~~ 322 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAA--------D--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----------REVAADY 322 (452)
T ss_dssp CCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----------TCHHHHH
T ss_pred CCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----------CCHHHHH
Confidence 9999999999999863 1 3578999999998 56 9999999999987 2 4457999
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhhhhh
Q 007930 497 NLAATYDA----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE----TGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 497 ~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+||.+|.. ..++++|..+|+++.+. ....+.++||.+|.. ..+..+|. ..++.+.+..+..
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARN----------GQNSADFAIAQLFSQGKGTKPDPLNAY-VFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTT----------TCTTHHHHHHHHHHSCTTBCCCHHHHH-HHHHHHHTTCCHH
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhh----------ChHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHCCCHH
Confidence 99999987 44999999999999863 335678999999985 45888888 7777777655443
No 52
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=6.7e-22 Score=178.43 Aligned_cols=280 Identities=13% Similarity=0.088 Sum_probs=221.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Q 007930 208 EAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVS 287 (584)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 287 (584)
...+..|+|..|+..+++.....|.. .......++.+|...|+++.|+..++. ..+....++..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~-------~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~~~~~~a~~~ 70 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPER-------DVERDVFLYRAYLAQRKYGVVLDEIKP---------SSAPELQAVRM 70 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHH-------HHHHHHHHHHHHHHTTCHHHHHHHSCT---------TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchh-------hHHHHHHHHHHHHHCCCHHHHHHHhcc---------cCChhHHHHHH
Confidence 34567899999999887765433322 123467789999999999999987653 24446778889
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHH
Q 007930 288 IGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIA 367 (584)
Q Consensus 288 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 367 (584)
++..+...|++++|+..+++.+.. ...|....++..+|.++...|++++|+..+++ . ...
T Consensus 71 la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~---------~~~ 130 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G---------DSL 130 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C---------CSH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C---------CCH
Confidence 999999999999999999988763 01477888999999999999999999999987 1 125
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA 447 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 447 (584)
.++..+|.++..+|++++|+..++++++..++. ........+..++...|++++|+..|+++++. .|
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p 197 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CS 197 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CC
Confidence 688999999999999999999999999885432 11111111223344558999999999999985 23
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHh
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED-AIEILEYILKVREEKL 526 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~~~~ 526 (584)
....+++++|.++...|++++|+..|+++++. +|+.+.++.++|.++...|++.+ +..++++++++
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~----- 264 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA----- 264 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----
Confidence 34689999999999999999999999999999 89999999999999999999976 57899999998
Q ss_pred CCCChhHHHHHHHHHHHHHHhchHHHHHHH
Q 007930 527 GTANPDIDDEKERLAELLKETGRARNRKGK 556 (584)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (584)
+|+.+.+. .+..+.+.++++..+
T Consensus 265 ---~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 265 ---HRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp ---CTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred ---CCCChHHH----HHHHHHHHHHHHHHH
Confidence 67665543 456777778877643
No 53
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=1.4e-20 Score=186.54 Aligned_cols=387 Identities=12% Similarity=0.006 Sum_probs=272.2
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 007930 111 ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE 190 (584)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 190 (584)
+|....++..++.. ...|++++|...|+++++.. +... ..|..++..+...|++++|...|++++..
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-----P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~--- 75 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-----PSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMK--- 75 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTT---
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Confidence 45556777788874 77999999999999999765 2232 44888999999999999999999999988
Q ss_pred HhCCCChHHHHHHHHHHH-HHHHhCCHHHHHH----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH---------hc
Q 007930 191 ALGDSDPRVAETCRYLAE-AHIQAMQFDEAEN----LCKKILEIHREHGHSASLEEAADRRLMALVYEA---------KA 256 (584)
Q Consensus 191 ~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~---------~g 256 (584)
.|. ...|..++. .....|++++|.+ .|++++...... +....+|...+..... .|
T Consensus 76 -----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~ 144 (530)
T 2ooe_A 76 -----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGME-----IMSYQIWVDYINFLKGVEAVGSYAENQ 144 (530)
T ss_dssp -----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTS-----TTCHHHHHHHHHHHHHSCCCSSTTHHH
T ss_pred -----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCC-----cccHHHHHHHHHHHhcCCCcccHHHHh
Confidence 553 446666664 4456688887776 566665543211 1123456666666554 78
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-------------HHcCChhHHHHHHHHHHHHHHHhhcC---Cc
Q 007930 257 DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIY-------------MSLCRFDEAIFSYQKGLTVFKATRGE---DH 320 (584)
Q Consensus 257 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~---~~ 320 (584)
++++|...|++++.. +. ......+....... ...+++.+|...+.+........... -.
T Consensus 145 ~~~~a~~~y~~al~~----P~-~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 145 RITAVRRVYQRGCVN----PM-INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp HHHHHHHHHHHHTTS----CC-TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred HHHHHHHHHHHHHhc----hh-hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 999999999998762 11 11222222222211 13455667766665533332222100 01
Q ss_pred cc-------HHHHHHHHHHHHHHc----ccH----HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH------
Q 007930 321 LS-------VASIFIRLADLYYRI----GKL----RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA------ 379 (584)
Q Consensus 321 ~~-------~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~------ 379 (584)
|. ....+.......... ++. ..++..|++++..... ...+|..+|.++..
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~---------~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH---------HPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhchhhh
Confidence 11 123333333222211 222 4788899999998633 36889999999886
Q ss_pred -hcCHH-------HHHHHHHHHHH-HHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH
Q 007930 380 -LNEHE-------EALKLLQKAMK-LLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450 (584)
Q Consensus 380 -~g~~~-------~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 450 (584)
.|+++ +|+..|+++++ +.++. ..++..++.++...|++++|...|++++++ .+....
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~ 356 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAI-------EDIDPT 356 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------SSSCHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-------cccCch
Confidence 79987 88999999886 44433 678889999999999999999999999984 122224
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 451 IVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT-YDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
.+|..++.++...|++++|...|+++++. .|.....+...+.+ +...|++++|...|+++++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-------- 420 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-------- 420 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--------
Confidence 68999999999999999999999999986 44444555555554 44699999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 530 NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
+|+...++..++.++...|+.++|. ..++.++...|
T Consensus 421 ~p~~~~~~~~~~~~~~~~g~~~~Ar-~~~~~al~~~~ 456 (530)
T 2ooe_A 421 YGDIPEYVLAYIDYLSHLNEDNNTR-VLFERVLTSGS 456 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTTCHHHHH-HHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHhCCCHhhHH-HHHHHHHhccC
Confidence 6788899999999999999999999 88888887654
No 54
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=1.6e-21 Score=175.92 Aligned_cols=264 Identities=15% Similarity=0.075 Sum_probs=212.3
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchH-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEV-AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFI 328 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 328 (584)
...+..|+|..|+..+++... ..|.. ......++.+|..+|++++|+..++.. .+....++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----------~~~~~~a~~ 69 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----------SAPELQAVR 69 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----------SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----------CChhHHHHH
Confidence 345678999999998875322 23333 456788899999999999999766441 345678889
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHH
Q 007930 329 RLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408 (584)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 408 (584)
.++..+...|++++|++.+++.+.... .|....++..+|.++...|++++|+..+++ +. ..
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~-------~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~-------~~ 130 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSV-------DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GD-------SL 130 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CC-------SH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhccc-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CC-------CH
Confidence 999999999999999999999876420 123356789999999999999999999987 21 14
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.++..+|.++..+|++++|+..+++++... + .. ........+..++...|++++|+..|+++++. .
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p-~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~ 196 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQD----E-DA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------C 196 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-TC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----c-Cc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------C
Confidence 677889999999999999999999999861 1 11 11111112223344569999999999999998 7
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
|....++..+|.++..+|++++|+..|++++.+ +|+++.++.++|.++..+|+..++...+++.++..+|+.
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 888899999999999999999999999999998 899999999999999999999887658999999888887
Q ss_pred hHH
Q 007930 569 VKK 571 (584)
Q Consensus 569 ~~~ 571 (584)
+..
T Consensus 269 ~~~ 271 (291)
T 3mkr_A 269 PFI 271 (291)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 55
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.89 E-value=3.5e-21 Score=174.65 Aligned_cols=250 Identities=13% Similarity=0.067 Sum_probs=196.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH
Q 007930 257 DYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR 336 (584)
Q Consensus 257 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 336 (584)
++++|+..|.++ |.+|...|++++|+.+|++++++..+.. +.+..+.++.++|.+|..
T Consensus 32 ~~~~A~~~~~~a--------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------------ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHH--------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHH
Confidence 588898888875 5577889999999999999999987764 345568899999999999
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 007930 337 IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL-NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMG 415 (584)
Q Consensus 337 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 415 (584)
+|++++|+.++++++.+... ..+....+.++.++|.+|... |++++|+.+|++++++.+.. +.......++.++|
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~---~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTH---RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCA 165 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 99999999999999999876 334556678999999999996 99999999999999999876 44445567889999
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHH
Q 007930 416 VMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVY 495 (584)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 495 (584)
.++..+|++++|+.+|++++.+...... .......++.++|.++..+|++++|+.+|++++++...... ......+
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l 241 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRL-SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFL 241 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTT-TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCc-ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHH
Confidence 9999999999999999999986332211 01123457899999999999999999999999987322111 1112345
Q ss_pred HHHHHHHH--HcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 496 SNLAATYD--ALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 496 ~~la~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
..++..+. ..+++++|+..|++++.+ +|.....+..+-...
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence 56666664 456788888888888776 788777766665554
No 56
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.89 E-value=3.3e-21 Score=174.75 Aligned_cols=250 Identities=13% Similarity=0.084 Sum_probs=198.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 007930 215 QFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS 294 (584)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 294 (584)
++++|+..|+++ |.+|...|++++|+..|.+++.+....++.+..+.++.++|.+|..
T Consensus 32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 488888887776 4467788999999999999999998888888889999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 007930 295 LCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI-GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEI 373 (584)
Q Consensus 295 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 373 (584)
+|++++|+.+|++++++..... +....+.++.++|.+|... |++++|+.+|++++++.+. ..+......++.++
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~---~~~~~~~~~~~~~l 164 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRG--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ---DQSVALSNKCFIKC 164 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHH
Confidence 9999999999999999987654 2344578899999999996 9999999999999999865 22344556789999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHH
Q 007930 374 SAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVL 453 (584)
Q Consensus 374 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 453 (584)
|.++..+|++++|+.+|++++.+.+...........++.++|.++..+|++++|+.+|++++.+....... .....+
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~~~l 241 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS---RESNFL 241 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc---HHHHHH
Confidence 99999999999999999999998766533333456678899999999999999999999999865443221 123455
Q ss_pred HHHHHHHH--hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 007930 454 NQMGLACL--QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502 (584)
Q Consensus 454 ~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 502 (584)
..++..+. ..+++++|+..|++++.+ +|....++..+-...
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence 66676665 457899999999888776 666655555554443
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.88 E-value=5.9e-20 Score=165.46 Aligned_cols=222 Identities=18% Similarity=0.130 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHhhc
Q 007930 242 AADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS----LCRFDEAIFSYQKGLTVFKATRG 317 (584)
Q Consensus 242 a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 317 (584)
+.+++.+|.++...|++++|+.+|++++. +....++..+|.++.. .+++++|+.+|+++++.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------ 71 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------ 71 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------
Confidence 45689999999999999999999999876 2334678999999999 99999999999999876
Q ss_pred CCcccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCHHHHHHH
Q 007930 318 EDHLSVASIFIRLADLYYR----IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA----LNEHEEALKL 389 (584)
Q Consensus 318 ~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 389 (584)
....++..+|.++.. .+++++|+.+|+++++.. ...++..+|.+|.. .+++++|+.+
T Consensus 72 ----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 136 (273)
T 1ouv_A 72 ----NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----------YAEGCASLGGIYHDGKVVTRDFKKAVEY 136 (273)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred ----CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----------CccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 156789999999999 999999999999998762 25789999999999 9999999999
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh---
Q 007930 390 LQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV----VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ--- 462 (584)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 462 (584)
|+++++.. . ..++..+|.++.. .+++++|+.+|+++++. . ...++..+|.++..
T Consensus 137 ~~~a~~~~--~-------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 137 FTKACDLN--D-------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------K---DSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HHHHHHTT--C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTCS
T ss_pred HHHHHhcC--c-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCC
Confidence 99999752 1 4577899999999 99999999999999874 1 24788999999999
Q ss_pred -hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 007930 463 -LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKV 521 (584)
Q Consensus 463 -~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 521 (584)
.+++++|+.+|+++++. .+ ..++..+|.+|.. .+++++|+.+|++++++
T Consensus 198 ~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 198 ATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 99999999999999986 33 5789999999999 99999999999999998
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=2.2e-21 Score=171.77 Aligned_cols=222 Identities=16% Similarity=0.145 Sum_probs=170.3
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
...+..+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++.....
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-- 89 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-- 89 (243)
T ss_dssp ----------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--
Confidence 345667888999999999999999999999875 5677889999999999999999999999999987532
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
...++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++..
T Consensus 90 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~- 154 (243)
T 2q7f_A 90 -------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL- 154 (243)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-
T ss_pred -------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 36788899999999999999999999999876544 567788999999999999999999999885
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.+....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|..+++++
T Consensus 155 -------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 155 -------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred -------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2233578899999999999999999999999998 7777889999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 519 LKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 519 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
+++ +|+...++..++.+....|
T Consensus 220 ~~~--------~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 220 IDI--------QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHH--------CTTCHHHHHHHTC------
T ss_pred Hcc--------CcchHHHHHHHHHHHhhcc
Confidence 998 7888888888877765544
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.88 E-value=7.3e-20 Score=164.86 Aligned_cols=233 Identities=16% Similarity=0.125 Sum_probs=203.1
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHh
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR----IGKLRESKSYCENALRVCA 355 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 355 (584)
..+.++..+|.++...|++++|+.+|+++++. ....++..+|.++.. .+++++|+.+|+++++..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 34567899999999999999999999999872 234688999999999 999999999999998762
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH----hccHHHH
Q 007930 356 KPAPATAPEEIANGLTEISAIYEA----LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV----VGRYGEA 427 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 427 (584)
...++..+|.++.. .+++++|+.+|+++++.. ...++..+|.+|.. .+++++|
T Consensus 73 ----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 73 ----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp ----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred ----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHH
Confidence 25789999999999 999999999999998751 15678899999999 9999999
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 007930 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYD 503 (584)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 503 (584)
+.+|+++++. . ...++..+|.++.. .+++++|+.+|+++++. ....++..+|.+|.
T Consensus 134 ~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 134 VEYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH
Confidence 9999999984 1 24688999999998 99999999999999975 23578999999999
Q ss_pred H----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhhhhhhHHHH
Q 007930 504 A----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE----TGRARNRKGKSLENLLDSNAYRVKKEV 573 (584)
Q Consensus 504 ~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~l~~~~~~~~~~~~~~~ 573 (584)
. .+++++|+.+|+++++. .| ..++..+|.+|.. .+++++|. .+++.+++.+|+.....+
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~-~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHHTCHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHH-HHHHHHHHcCCHHHHHHH
Confidence 9 99999999999999986 33 6789999999999 99999999 999999988887665443
No 60
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=5.4e-19 Score=180.57 Aligned_cols=355 Identities=15% Similarity=0.107 Sum_probs=211.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHH-------------------------HHHHHHhcC
Q 007930 75 LKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHM-------------------------LAAIYCSLG 129 (584)
Q Consensus 75 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-------------------------l~~~~~~~g 129 (584)
-..++.+...|. +.+|++.+++++-- .+.. ..+++.... .. +|.++...|
T Consensus 989 s~~vKaf~~agl-p~EaieLLEKivl~-~s~f--s~n~~Lqnl-Li~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 989 SVTVKAFMTADL-PNELIELLEKIVLD-NSVF--SEHRNLQNL-LILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHcC-CCcc--cccHHHHHH-HHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 345567778898 99999999999821 1101 011121111 11 245555555
Q ss_pred ChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 007930 130 RFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEA 209 (584)
Q Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 209 (584)
.+++|..+|+++-.. ...+...+...+++++|+++++++ ....+|..+|.+
T Consensus 1064 lyEEAf~IYkKa~~~----------------~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDVN----------------TSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQLAKA 1114 (1630)
T ss_pred CHHHHHHHHHHcCCH----------------HHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHHHHHH
Confidence 555555555553100 001111122444444444444322 124556666666
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 007930 210 HIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIG 289 (584)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 289 (584)
+...|++++|+..|.++ .+ ...+..+|.++...|++++|+++|..+..... . ..+...+|
T Consensus 1115 ql~~G~~kEAIdsYiKA-------dD------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~----e---~~Idt~La 1174 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA-------DD------PSSYMEVVQAANTSGNWEELVKYLQMARKKAR----E---SYVETELI 1174 (1630)
T ss_pred HHhCCCHHHHHHHHHhc-------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----c---ccccHHHH
Confidence 66666666666666554 10 12355666666666666666666666544311 0 01112356
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 290 NIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
.+|.+++++++ ++.|. . .+.. ..+..+|..+...|+|++|..+|.++ ..
T Consensus 1175 faYAKl~rlee-le~fI---~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-----------------~n 1223 (1630)
T 1xi4_A 1175 FALAKTNRLAE-LEEFI---N---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SN 1223 (1630)
T ss_pred HHHHhhcCHHH-HHHHH---h---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-----------------hH
Confidence 66666666553 22221 1 1222 23445777777777777777776663 24
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchH
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFF 449 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 449 (584)
|..++.++..+|++++|++.++++.. ..+|...+.++...|+|..|..+....+. .
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA~n------------~~aWkev~~acve~~Ef~LA~~cgl~Iiv------------~ 1279 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKANS------------TRTWKEVCFACVDGKEFRLAQMCGLHIVV------------H 1279 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCC------------HHHHHHHHHHHhhhhHHHHHHHHHHhhhc------------C
Confidence 55666667777777777777766622 24555666666677777776666553211 1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHhC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA--LGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
+..+..++..|...|.+++|+.++++++.+ ++.....+..||.+|.+ -++..+++++|...+.+
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini------ 1345 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI------ 1345 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc------
Confidence 345668888899999999999999999988 66777788788887765 45667777777777665
Q ss_pred CCCh-----hHHHHHHHHHHHHHHhchHHHHH
Q 007930 528 TANP-----DIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 528 ~~~p-----~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
.+ +.+..|..+..+|.+-|+++.|.
T Consensus 1346 --~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1346 --PKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred --chHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34 56778999999999999999998
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=1.7e-20 Score=157.96 Aligned_cols=172 Identities=16% Similarity=0.204 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
.+.+|.++|.++..+|++++|+.+|++++++.|+. ..++..+|.++...|++++|+..+.+++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-------VETLLKLGKTYMDIGLPNDAIESLKKFVVL-------- 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 36789999999999999999999999999997765 678899999999999999999999999885
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+....++..+|.++...++++.|...+.+++.+ .|....++..+|.++..+|++++|+..|++++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---- 136 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---- 136 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh----
Confidence 3344678999999999999999999999999998 8888899999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhh
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
+|....++.++|.++..+|++++|+ ..++.+++.+|+..
T Consensus 137 ----~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~a 175 (184)
T 3vtx_A 137 ----KPGFIRAYQSIGLAYEGKGLRDEAV-KYFKKALEKEEKKA 175 (184)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTHHHH
T ss_pred ----cchhhhHHHHHHHHHHHCCCHHHHH-HHHHHHHhCCccCH
Confidence 8999999999999999999999999 99999999888653
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=1.6e-20 Score=169.73 Aligned_cols=255 Identities=11% Similarity=-0.034 Sum_probs=204.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 007930 249 ALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFI 328 (584)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 328 (584)
+......|++++|+..+++++.. ...+.+....++..+|.++...|++++|+.+|+++++. .|....++.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~ 81 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFN 81 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhc--ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHH
Confidence 33444568999999999988763 11234678899999999999999999999999999998 677888999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHH
Q 007930 329 RLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIA 408 (584)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 408 (584)
.+|.++...|++++|+.++++++.+... ...++..+|.++...|++++|+.++++++++.+.. .
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~ 145 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELDPT---------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------P 145 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCcc---------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------h
Confidence 9999999999999999999999998533 25789999999999999999999999999876554 1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.... ...++...|++++|+..+++++.... .. .....++.++...++.++|+..+++++...... .
T Consensus 146 ~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 211 (275)
T 1xnf_A 146 FRSL-WLYLAEQKLDEKQAKEVLKQHFEKSD----KE-----QWGWNIVEFYLGNISEQTLMERLKADATDNTSL----A 211 (275)
T ss_dssp HHHH-HHHHHHHHHCHHHHHHHHHHHHHHSC----CC-----STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred HHHH-HHHHHHHhcCHHHHHHHHHHHHhcCC----cc-----hHHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence 2222 23344677999999999999887521 11 122347778888899999999999988763322 2
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+....++..+|.++...|++++|+.+|++++.+ +|.... ..+.++..+|++++|+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~---~~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNFV---EHRYALLELSLLGQDQ 266 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTCH---HHHHHHHHHHHHHHC-
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhHH---HHHHHHHHHHHHHhhH
Confidence 344689999999999999999999999999987 565433 3477889999999998
No 63
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.86 E-value=1.3e-19 Score=161.36 Aligned_cols=213 Identities=14% Similarity=0.054 Sum_probs=185.7
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP 359 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 359 (584)
....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++.....
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--- 103 (252)
T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR--- 103 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---
Confidence 34888999999999999999999999999987 5777889999999999999999999999999988532
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 360 ATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 360 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 439 (584)
...++..+|.++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.++++++..
T Consensus 104 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 170 (252)
T 2ho1_A 104 ------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-- 170 (252)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 357889999999999999999999999887 1234445678889999999999999999999999985
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.+....++..+|.++...|++++|+.+++++++. .|....++..++.++...|++++|..++++++
T Consensus 171 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 171 ------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp ------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2233678899999999999999999999999887 67778899999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHH
Q 007930 520 KVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~ 538 (584)
++ .|+......
T Consensus 237 ~~--------~p~~~~~~~ 247 (252)
T 2ho1_A 237 RL--------YPGSLEYQE 247 (252)
T ss_dssp HH--------CTTSHHHHH
T ss_pred HH--------CCCCHHHHH
Confidence 97 566555443
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.86 E-value=4.5e-20 Score=155.30 Aligned_cols=172 Identities=14% Similarity=0.246 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
.+.+|+++|.++..+|++++|+.+|++++++.+ ....++..+|.++...|++++|+..+.+++...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP---------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--
Confidence 467899999999999999999999999999853 346789999999999999999999999998876554
Q ss_pred CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
..++..+|.++...++++.|...+.+++.+ .+....++..+|.++...|++++|+..|++++++
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 73 -----AEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 667788999999999999999999999985 3344678999999999999999999999999999
Q ss_pred HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 007930 483 ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDID 534 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~ 534 (584)
+|....++..+|.+|..+|++++|+.+|++++++ +|+.+
T Consensus 137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~a 175 (184)
T 3vtx_A 137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--------EEKKA 175 (184)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------THHHH
T ss_pred -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------CccCH
Confidence 8899999999999999999999999999999998 78764
No 65
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.86 E-value=1.1e-19 Score=166.14 Aligned_cols=248 Identities=12% Similarity=0.062 Sum_probs=199.9
Q ss_pred hcCChHHHHHHHHHHHHHHHH-Hh--CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 007930 170 SMGLLDRSVWCYESGLEIQIE-AL--GDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRR 246 (584)
Q Consensus 170 ~~g~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~ 246 (584)
..|++++|..+++++.+.... .+ +.+.......+...|.+|...|++++|+..|.+++++.+... +....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 356788888888888776542 12 223344456677778899999999999999999999998876 4566788899
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHH
Q 007930 247 LMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASI 326 (584)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 326 (584)
.+|.+|..+|++++|+.+|++++.+....++....+.++.++|.+|.. |++++|+.+|++++++..... +......+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~~~~~~~~ 157 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--RLRQAAEL 157 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--ChhHHHHH
Confidence 999999999999999999999999998888888888999999999999 999999999999999987643 23445789
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST 406 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 406 (584)
+.++|.++..+|++++|+.+|++++.+.... .........+..+|.++...|++++|+.+|++++ +.+.... ..
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~--~~ 231 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEM---ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG--SE 231 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT--SH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC--CH
Confidence 9999999999999999999999999998763 2345566789999999999999999999999999 7655432 22
Q ss_pred HHHHHHHHHHHHHHhccHHHHHH
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARS 429 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~ 429 (584)
....+..++..+ ..|+.+....
T Consensus 232 e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 232 DCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHH
Confidence 334455566655 5666554444
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.86 E-value=5.1e-20 Score=178.64 Aligned_cols=214 Identities=14% Similarity=0.110 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKL-RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYE 378 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 378 (584)
.....+++++..+..... ..+..+.++..+|.++...|++ ++|+.+|++++++.. ....++..+|.+|.
T Consensus 79 ~~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p---------~~~~a~~~lg~~~~ 148 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP---------ELVEAWNQLGEVYW 148 (474)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC---------CCHHHHHHHHHHHH
Confidence 344445555555444332 2577899999999999999999 999999999999853 34679999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHHHHHcCCCCCchH
Q 007930 379 ALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV---------GRYGEARSSFESAVVKLRASGESKSAFF 449 (584)
Q Consensus 379 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 449 (584)
..|++++|+.+|++++++.+. ..++..+|.++... |++++|+.+|++++++ .+..
T Consensus 149 ~~g~~~~A~~~~~~al~~~p~--------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~ 212 (474)
T 4abn_A 149 KKGDVTSAHTCFSGALTHCKN--------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLD 212 (474)
T ss_dssp HHTCHHHHHHHHHHHHTTCCC--------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred HcCCHHHHHHHHHHHHhhCCC--------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCC
Confidence 999999999999999976421 47888999999999 9999999999999996 3345
Q ss_pred HHHHHHHHHHHHhh--------CCHHHHHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQL--------YRINEATELFEEARGVLEQECGSCHL---DTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 450 ~~~~~~l~~~~~~~--------g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
..++..+|.++... |++++|+.+|++++++ +| ....++.++|.+|...|++++|+.+|+++
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 68999999999999 9999999999999999 77 88999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHH
Q 007930 519 LKVREEKLGTANPDIDDEKERLAELLKETGRARNRKG 555 (584)
Q Consensus 519 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (584)
+++ +|+...++..++.++..+|++++|..
T Consensus 285 l~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 285 AAL--------DPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 89999999999999999999999983
No 67
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.86 E-value=3.1e-19 Score=163.10 Aligned_cols=249 Identities=14% Similarity=0.093 Sum_probs=198.1
Q ss_pred hcCChhhHHHHHHHHHHHHHhc-cC-CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 007930 127 SLGRFEEAVPVLERSIEVVDIG-KG-SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCR 204 (584)
Q Consensus 127 ~~g~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (584)
..|++++|.++++++.+..+.. .. .......+..+...|.+|...|++++|+..|.+++++.... .+....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 4577888888888888766531 11 12233344567778899999999999999999999998764 23446688999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 007930 205 YLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAI 284 (584)
Q Consensus 205 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 284 (584)
.+|.+|...|++++|+.+|++++++.+..+ +....+.++..+|.+|.. |++++|+.+|++++.+....++......+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 999999999999999999999999988766 344567889999999999 99999999999999999887777778899
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChH
Q 007930 285 DVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPE 364 (584)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 364 (584)
+.++|.++..+|++++|+.+|++++.+..... ..+....++..+|.++..+|++++|+.+|++++ +.+.. ...
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~----~~~ 230 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF----SGS 230 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS----TTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC----CCC
Confidence 99999999999999999999999999977653 133456688999999999999999999999999 65331 112
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHH
Q 007930 365 EIANGLTEISAIYEALNEHEEALK 388 (584)
Q Consensus 365 ~~~~~~~~la~~~~~~g~~~~A~~ 388 (584)
.....+..++..+ ..|+.+....
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2344555666655 4566554444
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=2.1e-19 Score=156.88 Aligned_cols=213 Identities=19% Similarity=0.143 Sum_probs=187.8
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.+....++..+|.++...|++++|+.++++++..... ...++..+|.++...|++++|+.++++++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 5778899999999999999999999999999998532 3578899999999999999999999999988654
Q ss_pred CCCCcccHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVV-GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
. ..++..+|.++... |++++|+.++++++. ....+....++..+|.++...|++++|+.+++++++
T Consensus 75 ~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 75 S-------AEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp C-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 56788999999999 999999999999987 112344578899999999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhchHHHHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP-DIDDEKERLAELLKETGRARNRKGKS 557 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (584)
. .|....++..+|.++...|++++|..++++++.. .| .....+..++.++...|+.++|. .+
T Consensus 142 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~-~~ 204 (225)
T 2vq2_A 142 A--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAY-EY 204 (225)
T ss_dssp H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred h--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHH-HH
Confidence 8 7777889999999999999999999999999997 56 67778889999999999999998 88
Q ss_pred HHHHHhhhhhhhHH
Q 007930 558 LENLLDSNAYRVKK 571 (584)
Q Consensus 558 l~~~~~~~~~~~~~ 571 (584)
++.++...|+....
T Consensus 205 ~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 205 EAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHCTTCHHH
T ss_pred HHHHHHhCCCCHHH
Confidence 88888777766554
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=4.5e-19 Score=154.75 Aligned_cols=216 Identities=14% Similarity=0.105 Sum_probs=185.1
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
..+....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 35677888999999999999999999999999987 5677889999999999999999999999999987532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEAL-NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
...++..+|.++... |++++|+.+++++++ . +..+....++..+|.++...|++++|+.++++++
T Consensus 75 ---------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 75 ---------SAEINNNYGWFLCGRLNRPAESMAYFDKALA-D----PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp ---------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S----TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356889999999999 999999999999987 1 2334456788899999999999999999999998
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcCChHHHHHH
Q 007930 436 VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL-DTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
+. .+....++..+|.++...|++++|+.+++++++. .| .....+..++.++...|++++|..+
T Consensus 141 ~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 141 AA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp HH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred Hh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 85 2233578999999999999999999999999998 56 6677888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHH
Q 007930 515 LEYILKVREEKLGTANPDIDDEKE 538 (584)
Q Consensus 515 ~~~a~~~~~~~~~~~~p~~~~~~~ 538 (584)
++.+... .|+...+..
T Consensus 205 ~~~~~~~--------~p~~~~~~~ 220 (225)
T 2vq2_A 205 EAQLQAN--------FPYSEELQT 220 (225)
T ss_dssp HHHHHHH--------CTTCHHHHH
T ss_pred HHHHHHh--------CCCCHHHHH
Confidence 9998876 566555543
No 70
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.86 E-value=2.8e-20 Score=164.61 Aligned_cols=220 Identities=20% Similarity=0.193 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.+..+..+|.++...|++++|+..+++++. ..+....++..+|.++...|++++|+..++++++. .
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~ 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE------ENKEDAIPYINFANLLSSVNELERALAFYDKALEL--------D 87 (243)
T ss_dssp --------------------CCTTHHHHHT------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Confidence 456688999999999999999999999876 35556788999999999999999999999999988 5
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
+....++..+|.++...|++++|+.+++++++.... ...++..+|.++...|++++|+.+++++++..+..
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC---------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 777889999999999999999999999999998633 25678999999999999999999999999886554
Q ss_pred CCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 007930 401 PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 480 (584)
..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++++
T Consensus 159 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 222 (243)
T 2q7f_A 159 -------TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI- 222 (243)
T ss_dssp -------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-
Confidence 567889999999999999999999999885 2234578999999999999999999999999998
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHcC
Q 007930 481 EQECGSCHLDTLGVYSNLAATYDALG 506 (584)
Q Consensus 481 ~~~~~~~~~~~~~~~~~la~~~~~~g 506 (584)
.|+...++..++.+....|
T Consensus 223 -------~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 -------QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp -------CTTCHHHHHHHTC------
T ss_pred -------CcchHHHHHHHHHHHhhcc
Confidence 7888888888877665544
No 71
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.85 E-value=3.3e-20 Score=167.61 Aligned_cols=258 Identities=11% Similarity=0.021 Sum_probs=203.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 007930 207 AEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDV 286 (584)
Q Consensus 207 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (584)
+......|++++|+..++++++..+ ...+..+.++..+|.++...|++++|+..|++++.. .+....++.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~ 81 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRA----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFN 81 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhccc----ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc------CCCcHHHHH
Confidence 3344556889999999999987521 123456778999999999999999999999999875 556677899
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 007930 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEI 366 (584)
Q Consensus 287 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 366 (584)
.+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++++... .+
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~-- 145 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN------DP-- 145 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH--
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------Ch--
Confidence 9999999999999999999999998 5777889999999999999999999999999998533 11
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
.....+ .+....|++++|+..+++++...+.. . ....++.++...++.++|+..+++++...... .
T Consensus 146 -~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 211 (275)
T 1xnf_A 146 -FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKE---Q-----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----A 211 (275)
T ss_dssp -HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCCC---S-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred -HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCcc---h-----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence 222222 34467799999999999998875433 1 11357778888999999999999988753321 1
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEIL 515 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 515 (584)
+....++..+|.++...|++++|+.+|++++.+ +|... ...+.++..+|++++|++.+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence 233688999999999999999999999999987 55432 34477888999999998877
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=6e-20 Score=178.14 Aligned_cols=204 Identities=14% Similarity=0.088 Sum_probs=183.4
Q ss_pred CcchHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 277 QENEVAAIDVSIGNIYMSLCRF-DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
..+..+.++..+|.++...|++ ++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++++.
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~- 167 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC- 167 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 4667788999999999999999 9999999999998 68889999999999999999999999999999874
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh-----
Q 007930 356 KPAPATAPEEIANGLTEISAIYEAL---------NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVV----- 421 (584)
Q Consensus 356 ~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 421 (584)
+. ..++..+|.++... |++++|+.+|++++++.+.. ..++..+|.++...
T Consensus 168 --------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 168 --------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-------GRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp --------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHTT
T ss_pred --------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHhhc
Confidence 12 47899999999999 99999999999999987665 67888999999999
Q ss_pred ---ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 422 ---GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 422 ---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
|++++|+.+|++++.+... .+....++.++|.++...|++++|+..|++++++ +|+...++..+
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~l 298 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQQRE 298 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 9999999999999996110 0145789999999999999999999999999999 88889999999
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a 518 (584)
+.++..+|++++|+..+.+.
T Consensus 299 ~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999877654
No 73
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=1.5e-19 Score=160.88 Aligned_cols=213 Identities=17% Similarity=0.110 Sum_probs=188.3
Q ss_pred cccH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 320 HLSV-ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 320 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
+|.. +.++..+|.++...|++++|+.++++++..... ...++..+|.++...|++++|+.+++++++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---------SADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3443 889999999999999999999999999988422 367899999999999999999999999998865
Q ss_pred hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 399 DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.. ..++..+|.++...|++++|+.++++++. ....+....++..+|.++...|++++|+.+++++++
T Consensus 103 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 103 RN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43 56788999999999999999999999987 112345678899999999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSL 558 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l 558 (584)
. .|....++..+|.++...|++++|..+++++++. .|....++..++.++...|++++|. ..+
T Consensus 170 ~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~-~~~ 232 (252)
T 2ho1_A 170 L--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAA-SYG 232 (252)
T ss_dssp H--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred c--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHH-HHH
Confidence 8 7777899999999999999999999999999886 6778889999999999999999999 899
Q ss_pred HHHHhhhhhhhHH
Q 007930 559 ENLLDSNAYRVKK 571 (584)
Q Consensus 559 ~~~~~~~~~~~~~ 571 (584)
+.++...|+....
T Consensus 233 ~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 233 LQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHCTTSHHH
T ss_pred HHHHHHCCCCHHH
Confidence 9999888776553
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=4e-20 Score=185.84 Aligned_cols=174 Identities=22% Similarity=0.275 Sum_probs=161.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.|..+.+++++|.++..+|++++|+.+|++++++.++. ..++.++|.+|..+|++++|+.+|++++++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----- 72 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRI----- 72 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 46778999999999999999999999999999997765 788999999999999999999999999996
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
.+....++.++|.++..+|++++|++.|++++++ +|+...++.++|.+|..+|++++|+..|++++++
T Consensus 73 ---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l- 140 (723)
T 4gyw_A 73 ---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL- 140 (723)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 3455789999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 523 EEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+|+...++.+||.++..+|++++|. ..++.+++..++.
T Consensus 141 -------~P~~~~a~~~L~~~l~~~g~~~~A~-~~~~kal~l~~~~ 178 (723)
T 4gyw_A 141 -------KPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQ 178 (723)
T ss_dssp -------CSCCHHHHHHHHHHHHHTTCCTTHH-HHHHHHHHHHHHH
T ss_pred -------CCCChHHHhhhhhHHHhcccHHHHH-HHHHHHHHhChhH
Confidence 8999999999999999999999999 7888877665543
No 75
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.2e-17 Score=170.97 Aligned_cols=353 Identities=14% Similarity=0.088 Sum_probs=262.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhh
Q 007930 77 LARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALA 156 (584)
Q Consensus 77 ~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (584)
.|..+...|. +++|...|+++-.. .. .+...+...|++++|.++++++. .+
T Consensus 1055 IA~Iai~lgl-yEEAf~IYkKa~~~-------------~~---A~~VLie~i~nldrAiE~Aervn----------~p-- 1105 (1630)
T 1xi4_A 1055 IANIAISNEL-FEEAFAIFRKFDVN-------------TS---AVQVLIEHIGNLDRAYEFAERCN----------EP-- 1105 (1630)
T ss_pred HHHHHHhCCC-HHHHHHHHHHcCCH-------------HH---HHHHHHHHHhhHHHHHHHHHhcC----------CH--
Confidence 4888888998 89999988886421 11 12223447788888888888641 22
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC
Q 007930 157 KFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS 236 (584)
Q Consensus 157 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (584)
.+|..+|.++...|++++|+..|.++ +....+..+|.++...|++++|++++..+.+..+...
T Consensus 1106 --~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-- 1168 (1630)
T 1xi4_A 1106 --AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-- 1168 (1630)
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--
Confidence 45999999999999999999999775 2356778899999999999999999999988653321
Q ss_pred CCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhh
Q 007930 237 ASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATR 316 (584)
Q Consensus 237 ~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 316 (584)
+...+|.+|.+++++++ ++.|.. .+.. ..+..+|..+...|+|++|..+|.++
T Consensus 1169 -------Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1169 -------VETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred -------ccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 12348899999999885 444421 2333 34567999999999999999999985
Q ss_pred cCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007930 317 GEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 317 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 396 (584)
..|..++.++.++|++++|++.++++.. ..+|...+.++...|++..|..+... +..
T Consensus 1222 --------~ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv 1278 (1630)
T 1xi4_A 1222 --------SNFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV 1278 (1630)
T ss_pred --------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc
Confidence 2677899999999999999999998832 36888999999999999999987764 322
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh--hCCHHHHHHHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ--LYRINEATELFE 474 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~ 474 (584)
. +..+..++..|...|.+++|+.+++.++.+ .+.....+..+|.++.+ .++..+++++|.
T Consensus 1279 ~----------~deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1279 H----------ADELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred C----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 234457899999999999999999999985 23345667777777765 467778888888
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------HHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV------REEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
..+.+-+-+. --+.+..|..+..+|.+-|+++.|.....+.... +..... ++.+++.++.....|...+
T Consensus 1341 ~rini~k~~r---~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1341 SRVNIPKVLR---AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhcccchHhH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 7776511000 0145678899999999999999999555444321 222222 4566788888888887555
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=1.6e-19 Score=181.43 Aligned_cols=175 Identities=19% Similarity=0.206 Sum_probs=162.0
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.|..+.++++||.++..+|++++|+.+|++++++.. ....++.++|.++..+|++++|+.+|++++++.++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P---------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP---------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 688999999999999999999999999999999853 34789999999999999999999999999999776
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ..++.++|.++..+|++++|+++|++++++ .+....++.++|.++..+|++++|+..|++++++
T Consensus 76 ~-------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 76 F-------ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6 788999999999999999999999999996 3445789999999999999999999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
+|+...++.++|.++..+|++++|.+.+++++++.....
T Consensus 141 --------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 141 --------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp --------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred --------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 899999999999999999999999999999999976543
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.82 E-value=8.2e-19 Score=153.22 Aligned_cols=189 Identities=15% Similarity=0.101 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHL-SVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPA 360 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 360 (584)
...+..+|.++...|++++|+..|++++++ .| ....++..+|.++...|++++|+.++++++...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------ 72 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN------ 72 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------
Confidence 367889999999999999999999999998 33 555778889999999999999999999999874
Q ss_pred CChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
|....++..+|.++..+|++++|+..+++++++.+.........+.++..+|.++...|++++|+.+|++++++
T Consensus 73 ---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--- 146 (228)
T 4i17_A 73 ---YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--- 146 (228)
T ss_dssp ---CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---
T ss_pred ---cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---
Confidence 33578899999999999999999999999999877653223334577899999999999999999999999984
Q ss_pred cCCCCCch--HHHHHHHHHHHHHhhCCH---------------------------HHHHHHHHHHHHHHHHHhCCCCCch
Q 007930 441 SGESKSAF--FGIVLNQMGLACLQLYRI---------------------------NEATELFEEARGVLEQECGSCHLDT 491 (584)
Q Consensus 441 ~~~~~~~~--~~~~~~~l~~~~~~~g~~---------------------------~~A~~~~~~a~~~~~~~~~~~~~~~ 491 (584)
.|. ...++..+|.++...|+. ++|+.+|++++++ .|+.
T Consensus 147 -----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~ 213 (228)
T 4i17_A 147 -----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNR 213 (228)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCC
Confidence 566 678999999999999888 8999999999998 7888
Q ss_pred HHHHHHHHHHHH
Q 007930 492 LGVYSNLAATYD 503 (584)
Q Consensus 492 ~~~~~~la~~~~ 503 (584)
..+...++.+..
T Consensus 214 ~~~~~~l~~i~~ 225 (228)
T 4i17_A 214 TEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 788887777653
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=4.4e-18 Score=151.89 Aligned_cols=224 Identities=13% Similarity=0.078 Sum_probs=180.3
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
.+.....++.+|..++..|++++|+..|+++++.. ++++....+++.+|.++...|++++|+..|++++...+.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~- 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI- 84 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-
Confidence 45567788999999999999999999999998861 223444899999999999999999999999999998543
Q ss_pred CCCCChHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEA--------LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARS 429 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 429 (584)
++....+++.+|.++.. .|++++|+..|++++...++... +. .+..
T Consensus 85 -----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~--------------~a~~ 138 (261)
T 3qky_A 85 -----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL-------VD--------------DATQ 138 (261)
T ss_dssp -----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT-------HH--------------HHHH
T ss_pred -----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh-------HH--------------HHHH
Confidence 24567889999999999 99999999999999998766521 10 1111
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc----
Q 007930 430 SFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL---- 505 (584)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---- 505 (584)
.+..... .....++.+|.++...|++++|+..|+++++. .|+++....+++.+|.+|..+
T Consensus 139 ~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~ 202 (261)
T 3qky_A 139 KIRELRA-----------KLARKQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQS 202 (261)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccc
Confidence 1111111 12345788999999999999999999999998 333444788999999999987
Q ss_pred ------CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHH
Q 007930 506 ------GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 506 ------g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (584)
|++++|+..|+++++.. |++|....+...++.++..+|+++++.
T Consensus 203 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 203 VRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999872 556677889999999999999987765
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.80 E-value=7.6e-18 Score=147.04 Aligned_cols=173 Identities=16% Similarity=0.112 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLE-DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
...+..+|.++...|++++|+..|++++++.+ .. ..++..+|.++...|++++|+.+|++++..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-------SVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 37889999999999999999999999999875 32 356677999999999999999999999984
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH-------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL-------GVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.+....++..+|.++...|++++|+..+++++++ .|... .++..+|.++...|++++|+.+|+++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 5567889999999999999999999999999998 66655 67999999999999999999999999
Q ss_pred HHHHHHHhCCCChh--HHHHHHHHHHHHHHhchH---------------------------HHHHHHHHHHHHhhhhhhh
Q 007930 519 LKVREEKLGTANPD--IDDEKERLAELLKETGRA---------------------------RNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 519 ~~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~---------------------------~~A~~~~l~~~~~~~~~~~ 569 (584)
+++ +|+ ...++.++|.++...|+. ++|. ..++.+++.+|+..
T Consensus 144 l~~--------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 144 TDV--------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAV-DYLGEAVTLSPNRT 214 (228)
T ss_dssp TTS--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTTCH
T ss_pred Hhc--------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCCH
Confidence 997 899 899999999999999999 8888 89999998888766
Q ss_pred HH
Q 007930 570 KK 571 (584)
Q Consensus 570 ~~ 571 (584)
..
T Consensus 215 ~~ 216 (228)
T 4i17_A 215 EI 216 (228)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.78 E-value=4.2e-17 Score=145.57 Aligned_cols=205 Identities=14% Similarity=0.148 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..++.+|..+...|++++|+..|++++... ++++....+++.+|.++...|++++|+..|+++++..|...
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~---- 86 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP---- 86 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc----
Confidence 458899999999999999999999999872 33445589999999999999999999999999999876432
Q ss_pred HHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHcCCcchHHHHH--------------HHHHHHHHHcC
Q 007930 239 LEEAADRRLMALVYEA--------KADYESALEHLVLASMVMIANGQENEVAAID--------------VSIGNIYMSLC 296 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------------~~la~~~~~~g 296 (584)
....+++.+|.++.. .|++++|+..|++++.. .++.+....+. +.+|.+|...|
T Consensus 87 -~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 87 -RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp -THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345679999999999 99999999999988764 33344444444 88999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc----------ccHHHHHHHHHHHHHHHhcCCCCCChHHH
Q 007930 297 RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI----------GKLRESKSYCENALRVCAKPAPATAPEEI 366 (584)
Q Consensus 297 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 366 (584)
++++|+..|+++++.. ++.+....++..+|.+|..+ |++++|+..|+++++..+. ++..
T Consensus 163 ~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~ 231 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD------SPLL 231 (261)
T ss_dssp CHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT------CTHH
T ss_pred CHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC------ChHH
Confidence 9999999999999872 22344788999999999977 9999999999999998533 4566
Q ss_pred HHHHHHHHHHHHHhcCHHHHH
Q 007930 367 ANGLTEISAIYEALNEHEEAL 387 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~ 387 (584)
..+...++.++...++++++.
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 778888888888888776544
No 81
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=5.7e-17 Score=148.29 Aligned_cols=225 Identities=13% Similarity=0.048 Sum_probs=185.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH-------cccH-------HHHHHHHHHHHH-HHhcCCCCCCh
Q 007930 299 DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR-------IGKL-------RESKSYCENALR-VCAKPAPATAP 363 (584)
Q Consensus 299 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~ 363 (584)
++|+..|++++.. .|....++..+|.++.. .|++ ++|+..|++++. +.
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--------- 95 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--------- 95 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---------
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---------
Confidence 6888999999988 68889999999998874 4776 899999999998 43
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
|....+|..+|.++...|++++|...|++++++.+.. . ..++..+|.++...|++++|+..|+++++..
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----- 164 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----P--TLVYIQYMKFARRAEGIKSGRMIFKKAREDA----- 164 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----T--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-----
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC----c--cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----
Confidence 2346789999999999999999999999999864432 1 1277889999999999999999999998741
Q ss_pred CCCchHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQ-LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+....++...+.+... .|++++|...|+++++. .|....++..++.++...|++++|..+|++++...
T Consensus 165 ---p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 165 ---RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp ---TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred ---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 1223455555555433 69999999999999998 67788999999999999999999999999999840
Q ss_pred HHHhCCCCh-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 523 EEKLGTANP-DIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 523 ~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
...| .....+..++.++...|+.++|. ..++.++...|+.
T Consensus 234 -----~l~p~~~~~l~~~~~~~~~~~g~~~~a~-~~~~~a~~~~p~~ 274 (308)
T 2ond_A 234 -----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAFREE 274 (308)
T ss_dssp -----SSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHTTTT
T ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHcccc
Confidence 0145 36778899999999999999999 8888888887763
No 82
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.8e-16 Score=152.05 Aligned_cols=240 Identities=17% Similarity=0.167 Sum_probs=205.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC---------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 007930 203 CRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS---------LEEAADRRLMALVYEAKADYESALEHLVLASMVMI 273 (584)
Q Consensus 203 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 273 (584)
....|..+...|++++|++.|.++++..+...+... .....++..+|.+|...|++++|++++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 445677788999999999999999987766543211 22345688999999999999999999999998887
Q ss_pred HcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 007930 274 ANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353 (584)
Q Consensus 274 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 353 (584)
..++......+...++.++...|++++|+.++++++....... +......++..+|.++...|++++|..++++++..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 7666666667788899999999999999999999999987754 45677889999999999999999999999999998
Q ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 354 CAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
... ..+.+....++..++.+|...|++++|..++++++.+.+.....+...+.++..+|.++...|++.+|..+|.+
T Consensus 165 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 165 FKK---LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HTT---SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHh---cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 876 34567788999999999999999999999999999999888666666788889999999999999999999999
Q ss_pred HHHHHHHcCCCCCc
Q 007930 434 AVVKLRASGESKSA 447 (584)
Q Consensus 434 a~~~~~~~~~~~~~ 447 (584)
++..+...+.....
T Consensus 242 a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 242 SFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHTTTSSCH
T ss_pred HHHHhhhhhhhhhH
Confidence 99998877655443
No 83
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=5.1e-19 Score=162.10 Aligned_cols=331 Identities=14% Similarity=0.087 Sum_probs=155.7
Q ss_pred HcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHH
Q 007930 83 SSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYM 162 (584)
Q Consensus 83 ~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 162 (584)
..|+ .++|.+++++.- + ..+|..+|.++...|++++|++.|.++- ++ ..+.
T Consensus 15 ~~~~-ld~A~~fae~~~-----------~---~~vWs~La~A~l~~g~~~eAIdsfika~----------D~----~~y~ 65 (449)
T 1b89_A 15 HIGN-LDRAYEFAERCN-----------E---PAVWSQLAKAQLQKGMVKEAIDSYIKAD----------DP----SSYM 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccC-HHHHHHHHHhCC-----------C---hHHHHHHHHHHHHcCCHHHHHHHHHcCC----------CH----HHHH
Confidence 4565 677777777651 2 2488899999999999999999997741 11 2378
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 007930 163 QLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEA 242 (584)
Q Consensus 163 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 242 (584)
.++..+...|++++|+.+++.+.+. .++ ..+...++.+|.+.|++.++.++++. + + .
T Consensus 66 ~V~~~ae~~g~~EeAi~yl~~ark~--------~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~--------p--n----~ 122 (449)
T 1b89_A 66 EVVQAANTSGNWEELVKYLQMARKK--------ARE-SYVETELIFALAKTNRLAELEEFING--------P--N----N 122 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTTC--------C--------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh--------Ccc-chhHHHHHHHHHHhCCHHHHHHHHcC--------C--c----H
Confidence 8888999999999999999888775 122 45677899999999999999888752 1 1 1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
.++..+|..+...|.|++|..+|.++ ..+..+|.++..+|++++|++.++++.
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~------------- 175 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN------------- 175 (449)
T ss_dssp --------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC-------------
Confidence 26999999999999999999999965 367889999999999999999999871
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
...+|.....++...|+++.|..+... +. .+++. ...+..+|...|++++|+.++++++.+.+..
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~-------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah-- 240 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLH---IV-------VHADE---LEELINYYQDRGYFEELITMLEAALGLERAH-- 240 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTT---TT-------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC--
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHH---HH-------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH--
Confidence 356778889999999999999666554 11 12222 3458889999999999999999998765443
Q ss_pred CcccHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH--
Q 007930 403 YHSTIAGIEAQMGVMLYV--VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG-- 478 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-- 478 (584)
..++..+|.+|.+ .++..+.++.|...+.+-+-+.. -.....|..+..+|...++++.|+...-+...
T Consensus 241 -----~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a 312 (449)
T 1b89_A 241 -----MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA 312 (449)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTT
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhh
Confidence 4566677777654 56777777777666554321100 01235678889999999999999876544321
Q ss_pred ----HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007930 479 ----VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYIL 519 (584)
Q Consensus 479 ----~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 519 (584)
.+..+.. .+...+.++.....|. +....++..+..++
T Consensus 313 ~~~~~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 313 WKEGQFKDIIT--KVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp CCHHHHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred hhhHHHHHHHh--chhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 1122211 3445567777777766 45555666666665
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.76 E-value=4.2e-18 Score=136.87 Aligned_cols=147 Identities=11% Similarity=0.045 Sum_probs=128.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHH
Q 007930 372 EISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGI 451 (584)
Q Consensus 372 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 451 (584)
.||.++...|++++|+..+++++...++. ...++.+|.+|...|++++|+.+|++++++ .|....
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~-------~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~ 66 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK-------SIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK 66 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH-------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 47888999999999999999998776665 556678999999999999999999999996 344578
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHHhCCCC
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI-LEYILKVREEKLGTAN 530 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~~~~~~~~~ 530 (584)
++..+|.++...|++++|+.+|++++++ +|+...++..+|.+|...|++++|... +++++++ +
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------~ 130 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------F 130 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------C
Confidence 9999999999999999999999999999 899999999999999999999887765 5999999 8
Q ss_pred hhHHHHHHHHHHHHHHhch
Q 007930 531 PDIDDEKERLAELLKETGR 549 (584)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~ 549 (584)
|+++.++...+.++...|+
T Consensus 131 P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999988875
No 85
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.76 E-value=5.8e-17 Score=154.73 Aligned_cols=148 Identities=11% Similarity=-0.049 Sum_probs=138.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 492 (584)
..+..+..+|+|++|+.++++++++.....+..++..+.++.++|.+|..+|+|++|+.++++++++.++.+|++||+++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34455678999999999999999999988777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENL 561 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~ 561 (584)
..+.+||.+|..+|++++|+.+|++|+++.+..+|++||.+.+....|+.++..+|++++|. ..+..+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae-~~~~~~ 461 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE-FMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 444443
No 86
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.1e-16 Score=146.42 Aligned_cols=221 Identities=13% Similarity=0.049 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-HHHHhhcCCcccH
Q 007930 259 ESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS-------LCRF-------DEAIFSYQKGLT-VFKATRGEDHLSV 323 (584)
Q Consensus 259 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~~~ 323 (584)
++|+..|++++.. .|....++..+|.++.. .|++ ++|+..|+++++ + .|..
T Consensus 33 ~~a~~~~~~al~~------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p~~ 98 (308)
T 2ond_A 33 KRVMFAYEQCLLV------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKN 98 (308)
T ss_dssp HHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TTTC
T ss_pred HHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------Cccc
Confidence 6888899998875 56677888888888764 5886 899999999988 5 5778
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
..++..+|.++...|++++|...|++++++... + + ..++..+|.++...|++++|+..|+++++..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~-~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--- 167 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----D-P--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--- 167 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-----C-T--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-----C-c--cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---
Confidence 889999999999999999999999999986422 1 1 1288999999999999999999999999865432
Q ss_pred cccHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYV-VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
..++...+.+... .|++++|+.+|+++++.. |....++..+|.++...|++++|..+|++++..
T Consensus 168 ----~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--- 232 (308)
T 2ond_A 168 ----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS--- 232 (308)
T ss_dssp ----THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS---
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 3344444554333 799999999999999963 223678999999999999999999999999984
Q ss_pred HhCCCCC-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 483 ECGSCHL-DTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 483 ~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
....| ....++..++..+...|++++|...++++++.
T Consensus 233 --~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 233 --GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp --SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred --cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 01133 35678899999999999999999999999998
No 87
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.75 E-value=1.9e-16 Score=135.52 Aligned_cols=194 Identities=12% Similarity=0.133 Sum_probs=157.4
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 007930 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE 372 (584)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 372 (584)
+..|++++|...++.... +......++..+|.++...|++++|+.++++++.+.+. ..+.+....++.+
T Consensus 3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~ 71 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK---SGDHTAEHRALHQ 71 (203)
T ss_dssp ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHH
Confidence 467899999885544321 24577899999999999999999999999999999887 3456778899999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 007930 373 ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452 (584)
Q Consensus 373 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (584)
+|.++...|++++|+.++++++.+.............++.++|.++...|++++|+.++++++.+.+..+. ......+
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 149 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIACA 149 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHHH
Confidence 99999999999999999999999998763344467888999999999999999999999999998877553 3345677
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 501 (584)
+..+|.++...|++++|..++++++++.++... ......++..++.+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELED--SEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHhcccch
Confidence 899999999999999999999999999877643 23344444444443
No 88
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.75 E-value=2.5e-16 Score=134.79 Aligned_cols=193 Identities=14% Similarity=0.142 Sum_probs=159.4
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 007930 169 SSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLM 248 (584)
Q Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 248 (584)
...|++++|...++.... +.+....++..+|.++...|++++|+.++++++.+..... ..+..+.++..+
T Consensus 3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHH
Confidence 467899999885544321 2346788999999999999999999999999999998776 456778889999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHH
Q 007930 249 ALVYEAKADYESALEHLVLASMVMIANGQEN-EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIF 327 (584)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 327 (584)
|.++...|++++|+.++++++.+....++.+ ....++.++|.++...|++++|+.++++++.+.+... +......++
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~ 150 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIACAF 150 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHHHHH
Confidence 9999999999999999999999999887544 7888999999999999999999999999999877654 234557778
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 007930 328 IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI 376 (584)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 376 (584)
..+|.++...|++++|+.++++++++.+. ..+......+...++.+
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAE---LEDSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHhcccch
Confidence 99999999999999999999999999887 33455555666555544
No 89
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=8.1e-18 Score=154.23 Aligned_cols=334 Identities=14% Similarity=0.085 Sum_probs=157.7
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Q 007930 124 IYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETC 203 (584)
Q Consensus 124 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (584)
.....|+.++|.+++++. +++ .+|..+|.++...|++++|++.|.++- ....+
T Consensus 12 ll~~~~~ld~A~~fae~~----------~~~----~vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y 64 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC----------NEP----AVWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSY 64 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC----------CCh----HHHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHH
Confidence 344678899999999885 122 348899999999999999999997641 23467
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHH
Q 007930 204 RYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAA 283 (584)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 283 (584)
..++..+...|++++|+.+++.+++..+. +.+...++.+|.+.|++.++.+++.. |.. .
T Consensus 65 ~~V~~~ae~~g~~EeAi~yl~~ark~~~~---------~~i~~~Li~~Y~Klg~l~e~e~f~~~-----------pn~-~ 123 (449)
T 1b89_A 65 MEVVQAANTSGNWEELVKYLQMARKKARE---------SYVETELIFALAKTNRLAELEEFING-----------PNN-A 123 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTTC-----------C----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCcc---------chhHHHHHHHHHHhCCHHHHHHHHcC-----------CcH-H
Confidence 77888899999999999999988874322 13466789999999999999887752 222 3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCCh
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAP 363 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 363 (584)
.+..+|..+...|+|++|..+|.++ ..+..+|.++..+|++++|++.++++. .
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----~------- 176 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN----S------- 176 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT----C-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC----C-------
Confidence 8899999999999999999999975 257789999999999999999999982 1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
..+|..++.++...|+++.|..+....+ . + +.-...+..+|.+.|++++|+.++++++.+
T Consensus 177 ---~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~-------~---ad~l~~lv~~Yek~G~~eEai~lLe~aL~l------ 236 (449)
T 1b89_A 177 ---TRTWKEVCFACVDGKEFRLAQMCGLHIV-V-------H---ADELEELINYYQDRGYFEELITMLEAALGL------ 236 (449)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHTTTTTT-T-------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred ---chhHHHHHHHHHHcCcHHHHHHHHHHHH-h-------C---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCC------
Confidence 4788889999999999999966655311 1 1 122336788999999999999999999874
Q ss_pred CCCchHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 007930 444 SKSAFFGIVLNQMGLACLQ--LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK- 520 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 520 (584)
.+....++..+|.+|.+ .++..+.++.|...+.+-+-+.. -+.+..|..+..+|..-++++.|.....+...
T Consensus 237 --e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 237 --ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp --TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred --cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHHHHHHHHHhCChh
Confidence 22335677788877764 46777777777766665210000 03345788999999999999999876654321
Q ss_pred -----HHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 521 -----VREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 521 -----~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
.+..+.. ++.+.+.++.....|. +...... ..|..++
T Consensus 312 a~~~~~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l-~~ll~~l 353 (449)
T 1b89_A 312 AWKEGQFKDIIT--KVANVELYYRAIQFYL--EFKPLLL-NDLLMVL 353 (449)
T ss_dssp TCCHHHHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGH-HHHHHHH
T ss_pred hhhhHHHHHHHh--chhHHHHHHHHHHHHH--hcCHHHH-HHHHHHH
Confidence 1111111 3455778888877777 6666666 4444444
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.74 E-value=1e-16 Score=134.97 Aligned_cols=174 Identities=14% Similarity=0.156 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC
Q 007930 365 EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES 444 (584)
Q Consensus 365 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 444 (584)
.....+..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------- 71 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLAD------- 71 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence 456788999999999999999999999887654332 577889999999999999999999999986
Q ss_pred CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
.+....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 72 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 139 (186)
T 3as5_A 72 -APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--- 139 (186)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred -CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---
Confidence 2234678999999999999999999999999998 7778899999999999999999999999999998
Q ss_pred HhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 525 KLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.|....++..+|.++...|++++|. ..++.++...|+...
T Consensus 140 -----~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 140 -----RPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANELDEGASV 179 (186)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHCCCG
T ss_pred -----CccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCchh
Confidence 6888899999999999999999999 888888877776543
No 91
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.4e-15 Score=144.39 Aligned_cols=240 Identities=14% Similarity=0.080 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCC--------CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGS--------GQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
...+..|+.+...|+ |++|++.|.++++..+..... ........++..+|.+|...|++++|++++.+++.
T Consensus 5 ~~~l~~a~~l~~~~~-y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQ-YNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp THHHHHHHHHHHHTC-HHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346788999999999 999999999999865543221 11234556788999999999999999999999999
Q ss_pred HHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 007930 144 VVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLC 223 (584)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (584)
..+... .......+...+|.++...|++++|+.++++++...... .+.+....++..+|.++...|++++|..++
T Consensus 84 ~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 84 YMMQFA---KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp HHHTSC---HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHcc---chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 886532 222223457788999999999999999999999998764 335567889999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHHcCChhHHH
Q 007930 224 KKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQEN-EVAAIDVSIGNIYMSLCRFDEAI 302 (584)
Q Consensus 224 ~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 302 (584)
++++....... +....+.++..+|.+|...|++++|..++++++.......+++ ....++..+|.++...|++.+|.
T Consensus 159 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 159 NDLLREFKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99998887766 5567788999999999999999999999999998887776553 45778889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 007930 303 FSYQKGLTVFKATRGED 319 (584)
Q Consensus 303 ~~~~~al~~~~~~~~~~ 319 (584)
.+|.++++.+.......
T Consensus 237 ~~~~~a~~~~~~~~~~~ 253 (434)
T 4b4t_Q 237 SYFFESFESYHNLTTHN 253 (434)
T ss_dssp HHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHhhhhhhhh
Confidence 99999999987765443
No 92
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.74 E-value=3.1e-16 Score=142.33 Aligned_cols=198 Identities=12% Similarity=-0.048 Sum_probs=161.9
Q ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 321 LSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
+.....+...+..+...|++++|++.+.++++.... ..........+..+|.++...|++++|+.++++++......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC---ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 444556677888999999999999999999987533 11223345667789999999999999999999999876554
Q ss_pred CCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 007930 401 PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 480 (584)
.+....+.++.++|.+|...|++++|+.+|++++++.+..... ......++.++|.+|..+|++++|+.++++++++.
T Consensus 149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344467789999999999999999999999999987775432 22233789999999999999999999999999997
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 007930 481 EQECGSCHLDTLGVYSNLAATYDALGRVEDA-IEILEYILKVREEK 525 (584)
Q Consensus 481 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~ 525 (584)
.... .......++.++|.+|..+|++++| ..++++++.+.+..
T Consensus 227 ~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 227 CRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 5432 3556788999999999999999999 88899999987653
No 93
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.74 E-value=3.7e-16 Score=141.87 Aligned_cols=195 Identities=12% Similarity=-0.052 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 324 ASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
...+...+..+...|++++|...+++++..... ..+.......+..+|.++...|++++|+.++++++.+.... .+
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~-~~ 150 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-ID 150 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC-SC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccC---ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc-cc
Confidence 344455677889999999999999999875322 11111224456679999999999999999999999965443 34
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
......++.++|.+|...|++++|+.+|+++++..+.... ..+....++.++|.+|..+|++++|+.++++++++....
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 4456778999999999999999999999999998887633 455677899999999999999999999999999998776
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGR-VEDAIEILEYILKVREEK 525 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~ 525 (584)
.. ....+.++..+|.+|..+|+ +++|+.+|++|+.+++..
T Consensus 230 ~~--~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 230 NS--MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp TB--CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred Cc--HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 44 56678999999999999995 699999999999998754
No 94
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.74 E-value=7.4e-16 Score=139.83 Aligned_cols=199 Identities=11% Similarity=0.003 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 007930 112 LELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEA 191 (584)
Q Consensus 112 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (584)
+.....+...+..+...|+|++|+..++++++..+. ..........+..+|.++...|++++|+.++++++......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC---ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 445566677899999999999999999999876422 11122233456779999999999999999999999764321
Q ss_pred hCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 192 LGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 192 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 271 (584)
.+......++..+|.+|...|++++|+.+|++++++....... ....+.++.++|.+|..+|++++|+.++++++.+
T Consensus 149 --~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 149 --IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp --SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2233457799999999999999999999999999988776532 2223378999999999999999999999999999
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHHHHhh
Q 007930 272 MIANGQENEVAAIDVSIGNIYMSLCRFDEA-IFSYQKGLTVFKATR 316 (584)
Q Consensus 272 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~ 316 (584)
....++....+.++.++|.+|..+|++++| ..++++++.+++...
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 877777778899999999999999999999 888999999987654
No 95
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.73 E-value=3.1e-16 Score=142.30 Aligned_cols=194 Identities=13% Similarity=0.052 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcch---HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENE---VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
..+...+..+...|++++|+..+++++.. ....+. ....+..+|.++...|++++|+.++++++.+.... .+
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~ 150 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKK---EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--ID 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcc---ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--cc
Confidence 33455677888999999999999988652 122222 24455679999999999999999999999853221 12
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
......++.++|.+|...|++++|+.+++++++..+.. ..+.+..+.++.++|.+|..+|++++|+.++++++++.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33456789999999999999999999999999988763 3467788889999999999999999999999999999988
Q ss_pred CCCCcccHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHcCCC
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVG-RYGEARSSFESAVVKLRASGES 444 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~ 444 (584)
. +.....+.++.++|.++..+| ++++|+.+|++++.+++..+..
T Consensus 229 ~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 229 I-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp T-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred c-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 7 666777899999999999999 5799999999999999887654
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.73 E-value=2.4e-16 Score=134.72 Aligned_cols=173 Identities=10% Similarity=0.035 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH----------------HHHHHHHhccHHHHHHH
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQ----------------MGVMLYVVGRYGEARSS 430 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~ 430 (584)
+..+...|..+...|++++|+.+|++++...++. ..++.. +|.++...|++++|+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4567788999999999999999999999987765 455566 99999999999999999
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh--
Q 007930 431 FESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV-- 508 (584)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-- 508 (584)
|++++++ .|....++..+|.++...|++++|+.+|++++++ +|+...++..+|.+|...|+.
T Consensus 77 ~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 77 YKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHH
Confidence 9999996 3445789999999999999999999999999999 899999999999999877653
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 509 EDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 509 ~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
..+...+++++. + .| ...+++++|.++...|++++|+ ..++.++..+|+.....
T Consensus 141 ~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~-~~~~~al~l~P~~~~~~ 194 (208)
T 3urz_A 141 KKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKAR-NSLQKVILRFPSTEAQK 194 (208)
T ss_dssp HHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHH-HHHHHHTTTSCCHHHHH
T ss_pred HHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCHHHHH
Confidence 445555555443 1 33 3357788999999999999999 99999999888754443
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.72 E-value=3.2e-17 Score=131.65 Aligned_cols=135 Identities=14% Similarity=0.032 Sum_probs=120.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL 492 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 492 (584)
.||.++...|++++|+..+++++.. .+.....++.+|.+|...|++++|+.+|++++++ +|+..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 4788999999999999999999873 4556778899999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
.++..+|.+|...|++++|+.+|++++++ +|+...++.++|.++...|++++|...+++.+++.+|+.+..
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 99999999999999999999999999999 899999999999999999999988756789999988877654
No 98
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.72 E-value=7.6e-13 Score=131.49 Aligned_cols=450 Identities=9% Similarity=-0.011 Sum_probs=290.5
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCC---hhhHHHHHHHH
Q 007930 65 LDNPDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGR---FEEAVPVLERS 141 (584)
Q Consensus 65 ~~~~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a 141 (584)
..+|.....+...+......+. ++.+...|++++..+. .....+......-...|+ ++.+..+|+++
T Consensus 60 ~~np~d~~~W~~yi~~~~~~~~-~~~aR~vyEraL~~fP---------~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 60 EEQPTDIFLYVKLLKHHVSLKQ-WKQVYETFDKLHDRFP---------LMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHCcCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 4578889999999999988888 9999999999999743 234455566677778888 99999999999
Q ss_pred HHHHHhccCCchhhhHHHHHHHHHHHHHhcCCh----HHHH----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH---
Q 007930 142 IEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLL----DRSV----WCYESGLEIQIEALGDSDPRVAETCRYLAEAH--- 210 (584)
Q Consensus 142 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~--- 210 (584)
+...+. .+.. ..|..........++. +++. ..|++|+.. .|.-++....+|.......
T Consensus 130 l~~~~~-----~~sv--~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~----vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 130 LSKELG-----NNDL--SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK----CAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp TCSSSC-----CCCH--HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH----TTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHhcCC-----CCCH--HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----hCcccccchHHHHHHHHHHHhc
Confidence 865410 1222 1233333333333433 3444 555555543 3440122223333332222
Q ss_pred ------HHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-------------HHHHhccHHHHHHHHHHHHHH
Q 007930 211 ------IQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMAL-------------VYEAKADYESALEHLVLASMV 271 (584)
Q Consensus 211 ------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~-------------~~~~~g~~~~A~~~~~~a~~~ 271 (584)
..+++.+.+..+|++++.+ |. ... ..++..... +-....+|+.|...+.+....
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~i-P~----~~~--~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQ-PM----DCL--ESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTS-CC----SSH--HHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhC-cc----HHH--HHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2345577888888888752 11 001 111111100 111123444444444332221
Q ss_pred HHHcCC--------------------cchHHHHHHHHHHHHHHcCC---------hhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 272 MIANGQ--------------------ENEVAAIDVSIGNIYMSLCR---------FDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 272 ~~~~~~--------------------~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
...... .......+... +-+...+ .......|++++.. .|.
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~y--i~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--------~p~ 341 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEW--IRWESDNKLELSDDLHKARMTYVYMQAAQH--------VCF 341 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TTT
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHH--HHHHHhCCccccchhhHHHHHHHHHHHHHH--------cCC
Confidence 111110 00222333333 3333332 23355678888887 678
Q ss_pred HHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh--
Q 007930 323 VASIFIRLADLYYRIGKLRESK-SYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED-- 399 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-- 399 (584)
...+|...+..+...|+.++|. ..|++++..... ....+...+.+....|++++|...|++++...+.
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~---------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~ 412 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN---------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDL 412 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999997 999999986532 2467788899999999999999999999986431
Q ss_pred ------CCCC-------cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC-C
Q 007930 400 ------TPGY-------HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY-R 465 (584)
Q Consensus 400 ------~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~ 465 (584)
.+.. ......++...+.+..+.|+.+.|...|.+|++.. +.....++...+.+....+ +
T Consensus 413 ~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 413 AALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHHHHHHHHHHHTTTSC
T ss_pred hhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHHHHHHHHHHHHhCCC
Confidence 1110 01234567778888888999999999999998741 1111245556666666655 5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLK 545 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (584)
++.|..+|+.+++. .|.....+...+......|+.+.|..+|++++... ++.......+......-.
T Consensus 486 ~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-----~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 486 TKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-----SDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp CHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-----SSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHH
Confidence 99999999999998 55666777788888889999999999999999861 001256677888888889
Q ss_pred HhchHHHHHHHHHHHHHhhhhhhhHHH-HHhHhhcCCC
Q 007930 546 ETGRARNRKGKSLENLLDSNAYRVKKE-VTKRRSGFGF 582 (584)
Q Consensus 546 ~~g~~~~A~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 582 (584)
..|+.+.+. +..+.+....|+..... ...+|+-.++
T Consensus 553 ~~G~~~~~~-~v~~R~~~~~P~~~~~~~f~~ry~~~~~ 589 (679)
T 4e6h_A 553 KVGSLNSVR-TLEKRFFEKFPEVNKLEEFTNKYKVLDV 589 (679)
T ss_dssp HTCCSHHHH-HHHHHHHHHSTTCCHHHHHHHHTCBTTB
T ss_pred HcCCHHHHH-HHHHHHHHhCCCCcHHHHHHHHhcCCcc
Confidence 999999988 88888888888765554 6667765554
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.72 E-value=4.2e-16 Score=133.24 Aligned_cols=164 Identities=11% Similarity=0.157 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH----------------HHHHHHHcccHHHHHHH
Q 007930 283 AIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR----------------LADLYYRIGKLRESKSY 346 (584)
Q Consensus 283 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~ 346 (584)
..+...|..+...|++++|+..|+++++. .|....++.. +|.++...|++++|+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45677888999999999999999999998 6777888888 99999999999999999
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccH--
Q 007930 347 CENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRY-- 424 (584)
Q Consensus 347 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 424 (584)
|++++++.+ ....++..+|.++...|++++|+.+|++++++.|.. ..++.++|.+|...|+.
T Consensus 77 ~~~al~~~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 77 YKELLQKAP---------NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------LAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHHCT---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhHHHH
Confidence 999999853 346889999999999999999999999999997766 67888999999877653
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 425 GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 425 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
..+...+++++. +.....+++.+|.++...|++++|+.+|++++++
T Consensus 141 ~~~~~~~~~~~~---------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 141 KKLETDYKKLSS---------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHC---C---------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC---------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 445555655542 2223456788899999999999999999999998
No 100
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.72 E-value=5.6e-16 Score=130.40 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=150.8
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.......+..+|.++...|++++|+..+++++.... ....++..+|.++...|++++|+.+++++++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 74 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA---------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 345677889999999999999999999999876542 23678899999999999999999999999988554
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
. ..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+++++++.
T Consensus 75 ~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 75 N-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 3 567889999999999999999999999986 2234578899999999999999999999999998
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
.|....++..+|.++...|++++|..++++++++.
T Consensus 140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 67778999999999999999999999999999873
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.71 E-value=6.9e-17 Score=163.79 Aligned_cols=200 Identities=8% Similarity=-0.061 Sum_probs=166.1
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q 007930 293 MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE 372 (584)
Q Consensus 293 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 372 (584)
...|++++|+..++++++..-.......|....++..+|.++...|++++|+..|+++++.... ...+++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~ 472 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW---------RWRLVWY 472 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---------CHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---------hHHHHHH
Confidence 7889999999999999821111111126788889999999999999999999999999998643 3689999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 007930 373 ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIV 452 (584)
Q Consensus 373 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (584)
+|.++...|++++|+..|++++++.+.. ..++.++|.++...|++++ +..|++++++ .+....+
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a 536 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGE-------LAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISA 536 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHH
Confidence 9999999999999999999999998776 5678899999999999999 9999999986 3445679
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 007930 453 LNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDA-IEILEYILKVREEK 525 (584)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~ 525 (584)
++++|.++...|++++|+..|++++++ +|....++.++|.++...|+.+++ ...++++++.....
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999999998 899999999999999888876666 67777777776554
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.71 E-value=4.3e-17 Score=165.32 Aligned_cols=192 Identities=10% Similarity=-0.022 Sum_probs=160.5
Q ss_pred cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC
Q 007930 322 SVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP 401 (584)
Q Consensus 322 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 401 (584)
....++...+ ...|++++|++.+++++...-.. .....+....++..+|.++...|++++|+..|+++++..++.
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~-~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~- 466 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDA-DGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR- 466 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC--------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC-
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccc-cccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch-
Confidence 3333444444 77899999999999998211000 011224456789999999999999999999999999998776
Q ss_pred CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 007930 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLE 481 (584)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 481 (584)
..+++.+|.++...|++++|+..|++++++ .+....++.++|.++...|++++ +.+|++++++
T Consensus 467 ------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-- 529 (681)
T 2pzi_A 467 ------WRLVWYRAVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST-- 529 (681)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--
Confidence 678899999999999999999999999996 33346789999999999999999 9999999999
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
+|+...+++++|.++..+|++++|+..|++++++ +|+...++.++|.++...|+
T Consensus 530 ------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 530 ------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC----
T ss_pred ------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCC
Confidence 8999999999999999999999999999999998 89999999999999977665
No 103
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.70 E-value=1.1e-15 Score=145.88 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=145.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCch
Q 007930 74 LLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDR 153 (584)
Q Consensus 74 l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 153 (584)
++..+..+..+|+ |++|+..+++++++.++.. +..+|..+.++.+||.+|..+|+|++|+.++++++.+.....|+++
T Consensus 312 ~le~a~~~~~qg~-~~eA~~l~~~aL~~~~~~l-g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 312 TLEKIDKARSEGL-YHEVVKLCRECLEKQEPVF-ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHTTTC-HHHHHHHHHHHHHHHTTTB-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4455666778999 9999999999999999988 6778999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 007930 154 ALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHRE 232 (584)
Q Consensus 154 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 232 (584)
|.+. .+++++|.+|..+|++++|+.+|++++++.+..+|++||.+......++.++..++.+.+|...|.++.+...+
T Consensus 390 p~~a-~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 390 AQLG-MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9876 78999999999999999999999999999999999999999999999999999999999999999999776543
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.69 E-value=2.8e-15 Score=130.06 Aligned_cols=183 Identities=10% Similarity=0.019 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
...++.+|..+...|++++|+..|++++...+.. +....++..+|.++...|++++|+..|+++++... .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-----~~ 74 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-----TH 74 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-----CC
Confidence 4678899999999999999999999999876543 23356788999999999999999999999998632 23
Q ss_pred chHHHHHHHHHHHHHh------------------hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHH--------------
Q 007930 447 AFFGIVLNQMGLACLQ------------------LYRINEATELFEEARGVLEQECGSCHLDTLGV-------------- 494 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-------------- 494 (584)
+....+++.+|.++.. .|++++|+..|+++++. .|+++....+
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHHH
Confidence 3345688888988876 57899999999999987 2333332222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhh
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
...+|.+|...|++++|+..|+++++.. |++|....++..+|.++..+|++++|. ..++.+....|++.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~-~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAE-KVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhCCCch
Confidence 2578999999999999999999999972 334556689999999999999999999 88888887776543
No 105
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.68 E-value=5.6e-15 Score=121.26 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=126.7
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
+....+.++..+|.++...|++++|+.++++++++..... +......++..+|.++...|++++|+.++++++.+.+.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4455677788888888888888888888888888876643 23455678888888888888888888888888888766
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 357 PAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 357 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
..+++....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.+++++++
T Consensus 82 ---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34456667788889999999999999999999998888776 55566677888899999999999999999999888
Q ss_pred HHHH
Q 007930 437 KLRA 440 (584)
Q Consensus 437 ~~~~ 440 (584)
+.+.
T Consensus 158 ~~~~ 161 (164)
T 3ro3_A 158 ISRE 161 (164)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7654
No 106
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.68 E-value=7.9e-15 Score=120.38 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=142.7
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 196 DPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN 275 (584)
Q Consensus 196 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 275 (584)
.+..+.++..+|.++...|++++|+.++++++++.+... +....+.++..+|.++...|++++|+.++++++......
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 356678999999999999999999999999999998876 446667889999999999999999999999999999888
Q ss_pred CCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 276 GQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 276 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
++.+....++..+|.++...|++++|+.++++++++..... +.+....++..+|.++...|++++|+.++++++++.+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999987654 3466788999999999999999999999999999876
Q ss_pred c
Q 007930 356 K 356 (584)
Q Consensus 356 ~ 356 (584)
+
T Consensus 161 ~ 161 (164)
T 3ro3_A 161 E 161 (164)
T ss_dssp T
T ss_pred H
Confidence 5
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.68 E-value=3e-15 Score=129.84 Aligned_cols=199 Identities=12% Similarity=0.035 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
..++.+|..+...|++++|+..|++++... +.++....+++.+|.++...|++++|+..|+++++..|...
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~---- 75 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---- 75 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC----
Confidence 348889999999999999999999999872 33455678999999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC
Q 007930 239 LEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE 318 (584)
Q Consensus 239 ~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 318 (584)
....+++.+|.++...|.. ....+..++..+...|++++|+..|+++++...
T Consensus 76 -~~~~a~~~~g~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P----- 127 (225)
T 2yhc_A 76 -NIDYVMYMRGLTNMALDDS----------------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP----- 127 (225)
T ss_dssp -THHHHHHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHHHTTCT-----
T ss_pred -cHHHHHHHHHHHHHhhhhh----------------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-----
Confidence 2344688888888764421 001122334444445555555555555544311
Q ss_pred Cccc--------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHH
Q 007930 319 DHLS--------------VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE 384 (584)
Q Consensus 319 ~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 384 (584)
+++. .......+|.+|...|++++|+..|+++++..+. .+....++..+|.++..+|+++
T Consensus 128 ~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 128 NSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD------TQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------SHHHHHHHHHHHHHHHHTTCHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC------CCccHHHHHHHHHHHHHcCCcH
Confidence 0111 1123357899999999999999999999998643 3556689999999999999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 007930 385 EALKLLQKAMKLLEDT 400 (584)
Q Consensus 385 ~A~~~~~~a~~~~~~~ 400 (584)
+|+..++++....++.
T Consensus 202 ~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 202 QAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHhhCCCc
Confidence 9999999877665544
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.68 E-value=1.5e-15 Score=117.54 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=108.0
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
.+..+..+.++|..++..|++++|+..|++++++ .|....++.++|.++..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 4556888899999999999999999999999986 3445789999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
+|....++..+|.++..+|++++|+..|++++++ +|++..++..|+.++
T Consensus 77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 8899999999999999999999999999999999 899999999998764
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.63 E-value=1.1e-13 Score=123.38 Aligned_cols=233 Identities=11% Similarity=0.046 Sum_probs=196.9
Q ss_pred HHcCCh-hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 293 MSLCRF-DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG--KLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 293 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
...|.+ ++|+..+.+++.+ +|....+++..+.++...| ++++++.++.+++....+ ...+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk---------~y~a 105 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK---------NYQI 105 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT---------CCHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc---------cHHH
Confidence 344544 6899999999999 8999999999999999999 999999999999998644 3578
Q ss_pred HHHHHHHH----HHh---cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHH
Q 007930 370 LTEISAIY----EAL---NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYG--EARSSFESAVVKLRA 440 (584)
Q Consensus 370 ~~~la~~~----~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~a~~~~~~ 440 (584)
|+..+.++ ... +++++++.++.++++..++. ..++...+.++...|.++ +++++++++++.
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--- 175 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--- 175 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---
Confidence 88888888 666 78999999999999988777 678889999999999998 999999999985
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhCC------HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHH-HHH
Q 007930 441 SGESKSAFFGIVLNQMGLACLQLYR------INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVED-AIE 513 (584)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~ 513 (584)
++....+|...+.+....++ ++++++++.+++.. +|....++..++.++...|+..+ ...
T Consensus 176 -----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 176 -----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp -----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred -----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 34456789999999999887 99999999999999 99999999999999999998655 444
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-hhhhhhHH
Q 007930 514 ILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLD-SNAYRVKK 571 (584)
Q Consensus 514 ~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~-~~~~~~~~ 571 (584)
+..+++.+ +..+|....++..++.++.+.|+.++|. +.++.+.+ .+|-+.+.
T Consensus 243 ~~~~~~~~-----~~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 243 FSLQFVDL-----EKDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHTTEEG-----GGTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCGGGHHH
T ss_pred HHHHHHhc-----cCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhccChHHHHH
Confidence 66666553 1124777889999999999999999999 88888886 57765553
No 110
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.63 E-value=6.9e-15 Score=138.05 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=116.6
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 499 (584)
..|+|++|+..+++++++.....++.++..+.++.++|.+|..+|+|++|+.++++++++.++.+|++||+.+..+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999999999998887778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 500 ATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
.+|..+|++++|+.+|++|+++.+..+|++||.+.++..+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999998887764
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.63 E-value=1.1e-14 Score=112.67 Aligned_cols=117 Identities=12% Similarity=0.071 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.|..+..+.++|..++..|++++|+.+|++++++.+.. ..++.++|.++..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------AILYSNRAACLTKLMEFQRALDDCDTCIRL----- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----
Confidence 47789999999999999999999999999999987765 678899999999999999999999999996
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 007930 443 ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY 502 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 502 (584)
.+....++..+|.++..+|++++|+..|++++++ +|+...++..|+.++
T Consensus 77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 3345689999999999999999999999999999 899889999988764
No 112
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.62 E-value=8.7e-15 Score=137.92 Aligned_cols=132 Identities=13% Similarity=-0.014 Sum_probs=124.2
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Q 007930 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYS 496 (584)
Q Consensus 417 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 496 (584)
-+..+|++++|+..+++++++.....+..++..+.++.++|.+|..+|+|++|+.+++++++++++.+|++||+.+..++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 35578999999999999999887777778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 497 NLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 497 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
+||.+|..+|++++|+.+|++|+++++..+|++||.+.+++.+|+.+...++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999876553
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.62 E-value=2.3e-15 Score=119.76 Aligned_cols=111 Identities=12% Similarity=0.016 Sum_probs=103.2
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.|....+++.+|.++...|++++|+.+|++++.+ +|....++.++|.++..+|++++|+..|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 5667889999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHHH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKEV 573 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~ 573 (584)
+|+.+.+++++|.+|..+|++++|. ..++.++...|+....+.
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~-~~~~~al~l~~~~~~~~~ 142 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAK-ECFELVIQHSNDEKLKIK 142 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCCHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCHHHHHH
Confidence 8999999999999999999999999 999999988877664443
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.61 E-value=4.3e-15 Score=123.31 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA 447 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 447 (584)
..+..+|..+...|++++|+..|+++++..|+. ..++..+|.++...|++++|+..+++++.. .+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p 71 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR-------GDVKLAKADCLLETKQFELAQELLATIPLE--------YQ 71 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--------GC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--------cC
Confidence 457788999999999999999999999999887 678899999999999999999999998764 11
Q ss_pred hHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 448 FFGIVLNQMGLACL-QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 448 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
.......++.+.. ..++..+|+..++++++. +|+...+++.+|.++...|++++|+..|+++++.
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 137 (176)
T 2r5s_A 72 -DNSYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV----- 137 (176)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----
T ss_pred -ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----
Confidence 1233333443322 334455689999999998 8888999999999999999999999999999987
Q ss_pred CCCChhH--HHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 527 GTANPDI--DDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 527 ~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+|.. ..++..++.++..+|+.++|. ..++.++
T Consensus 138 ---~p~~~~~~a~~~l~~~~~~~g~~~~A~-~~y~~al 171 (176)
T 2r5s_A 138 ---NLGAQDGEVKKTFMDILSALGQGNAIA-SKYRRQL 171 (176)
T ss_dssp ---CTTTTTTHHHHHHHHHHHHHCSSCHHH-HHHHHHH
T ss_pred ---CcccChHHHHHHHHHHHHHhCCCCcHH-HHHHHHH
Confidence 6654 568999999999999999999 5555554
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.61 E-value=2.8e-13 Score=120.66 Aligned_cols=237 Identities=11% Similarity=-0.034 Sum_probs=198.8
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 007930 255 KADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC--RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLAD 332 (584)
Q Consensus 255 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 332 (584)
....++|+..+.+++.+ .|....+++..+.++...| ++++++..+.+++.. +|....+++..+.
T Consensus 46 ~e~s~~aL~~t~~~L~~------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~ 111 (306)
T 3dra_A 46 EEYSERALHITELGINE------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQL 111 (306)
T ss_dssp TCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHH
Confidence 34447899999999886 8888999999999999999 999999999999998 7888889999999
Q ss_pred HH----HHc---ccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHhCCCC
Q 007930 333 LY----YRI---GKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE--EALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 333 ~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~~~~~ 403 (584)
++ ... +++++++.++.++++...+ ...+|...+.+....|.++ ++++++.++++..+.+
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk---------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--- 179 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPK---------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--- 179 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC---
Confidence 88 666 7899999999999998644 3689999999999999998 9999999999887766
Q ss_pred cccHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH-HHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGR------YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE-ATELFEEA 476 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a 476 (584)
..++...+.++...++ ++++++++++++.. .+....+|+.++.++...|+..+ ...++.++
T Consensus 180 ----~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 180 ----NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp ----HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred ----HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 6678888999988887 99999999999985 44456889999999999988554 44466655
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHHhCCCChhHHHHHHHHHH
Q 007930 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILK-VREEKLGTANPDIDDEKERLAE 542 (584)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~p~~~~~~~~l~~ 542 (584)
+.+ +...+....++..++.+|.+.|+.++|+++|+.+.+ + +|.....+...+.
T Consensus 248 ~~~-----~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~--------Dpir~~yW~~~~~ 301 (306)
T 3dra_A 248 VDL-----EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY--------NPIRSNFWDYQIS 301 (306)
T ss_dssp EEG-----GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CGGGHHHHHHHHH
T ss_pred Hhc-----cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc--------ChHHHHHHHHHHh
Confidence 553 111366778999999999999999999999999886 4 8888777766554
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.61 E-value=2e-14 Score=129.52 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
....+..+|..+...|++++|+..|++++...++. ..++..+|.++...|++++|+..+++++..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-------- 180 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQ-------- 180 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchh--------
Confidence 35678899999999999999999999999998776 678889999999999999999999998764
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+.........+..+...++.++|+..+++++.. +|+...+++.+|.++...|++++|+..|++++..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---- 248 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX---- 248 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----
Confidence 2334566667777788899999999999999999 8999999999999999999999999999999998
Q ss_pred hCCCChhH--HHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 526 LGTANPDI--DDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 526 ~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
+|+. ..++.+++.++..+|+.++|. ..++..+
T Consensus 249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a~-~~~r~al 282 (287)
T 3qou_A 249 ----DLTAADGQTRXTFQEILAALGTGDALA-SXYRRQL 282 (287)
T ss_dssp ----CTTGGGGHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred ----ccccccchHHHHHHHHHHHcCCCCcHH-HHHHHHH
Confidence 7877 889999999999999999998 4444444
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.60 E-value=7.4e-15 Score=135.37 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=139.1
Q ss_pred HhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC-------CchHHH
Q 007930 379 ALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK-------SAFFGI 451 (584)
Q Consensus 379 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~ 451 (584)
.++++++|+..+++++...+.. +.++..+|.++...|++++|+.+|++++.+........ .+....
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~-------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQ-------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 4567778888888877766554 77889999999999999999999999999743221000 011257
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
++.++|.++...|++++|+.+|++++++ +|....+++.+|.+|..+|++++|+.+|++++++ +|
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 261 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP 261 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence 8999999999999999999999999999 8888999999999999999999999999999999 89
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
....++..++.++..+|++++|....++.++..
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976777776643
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.59 E-value=5.5e-15 Score=122.67 Aligned_cols=169 Identities=15% Similarity=0.012 Sum_probs=135.1
Q ss_pred CCcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Q 007930 68 PDLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDI 147 (584)
Q Consensus 68 ~~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 147 (584)
|.....++.+|..+...|+ +++|+..|+++++. +|....++..+|.++...|++++|+..+++++...
T Consensus 3 ~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~---------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-- 70 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGE-HAQALNVIQTLSDE---------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-- 70 (176)
T ss_dssp ---CTTHHHHHHHHHHTTC-HHHHHHHHHTSCHH---------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--
T ss_pred CCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--
Confidence 3344568899999999999 99999999999986 56668889999999999999999999999987653
Q ss_pred ccCCchhhhHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 007930 148 GKGSDRALAKFSGYMQLGDT-CSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKI 226 (584)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 226 (584)
+ ++.. ...++.+ +...+...+|+..++++++. +|....+++.+|.++...|++++|+..|+++
T Consensus 71 ---p-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 71 ---Q-DNSY----KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp ---C-CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---C-ChHH----HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2 2211 2223322 22334455689999999998 7888999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 227 LEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASM 270 (584)
Q Consensus 227 l~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 270 (584)
++..|.... ..++..+|.++...|+.++|+..|++++.
T Consensus 135 l~~~p~~~~------~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 135 LKVNLGAQD------GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HTTCTTTTT------THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHhCcccCh------HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 987665432 13588899999999999999999998765
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.59 E-value=3.8e-14 Score=122.85 Aligned_cols=221 Identities=12% Similarity=-0.034 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-------HHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEI-------SAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.++..|.-+ ..+++..|...|.+++.+. |..+.+|..+ +.++...++..+++..+++.+.+.+
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~d---------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p 78 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYD---------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM 78 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhC---------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 344445555 5799999999999999996 4468999999 8999999999999999999999877
Q ss_pred hCCCCccc--------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC
Q 007930 399 DTPGYHST--------------IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY 464 (584)
Q Consensus 399 ~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (584)
...+.... ...+...++.++...|++++|.+.|+..+. ..+... ..+.+|.++...+
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~~~ 149 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGAAE 149 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHHTT
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHHcC
Confidence 76553332 245566789999999999999999988765 234445 8899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHH
Q 007930 465 RINEATELFEEARGVLEQECGSCHLD-TLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD-IDDEKERLAE 542 (584)
Q Consensus 465 ~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~-~~~~~~~l~~ 542 (584)
++++|+.+|+++... + ++. ...+++.+|.++..+|++++|+.+|++++. ++..|. ..++.+++|.
T Consensus 150 r~~dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 150 RWTDVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAM 216 (282)
T ss_dssp CHHHHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhcc------C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHH
Confidence 999999999876553 1 222 245899999999999999999999999874 232266 7789999999
Q ss_pred HHHHhchHHHHHHHHHHHHHhhhhhhhHHHHHhHhhcCCC
Q 007930 543 LLKETGRARNRKGKSLENLLDSNAYRVKKEVTKRRSGFGF 582 (584)
Q Consensus 543 ~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 582 (584)
++..+|+.++|. ..++.++..+|+ .+.........|
T Consensus 217 aL~~lGr~deA~-~~l~~a~a~~P~---~~~~~aL~~~~~ 252 (282)
T 4f3v_A 217 ARRSQGNESAAV-ALLEWLQTTHPE---PKVAAALKDPSY 252 (282)
T ss_dssp HHHHHTCHHHHH-HHHHHHHHHSCC---HHHHHHHHCTTC
T ss_pred HHHHcCCHHHHH-HHHHHHHhcCCc---HHHHHHHhCCCC
Confidence 999999999999 999999999887 334444444444
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.58 E-value=3.1e-14 Score=142.26 Aligned_cols=157 Identities=11% Similarity=0.041 Sum_probs=127.3
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA 459 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (584)
.|++++|+..++++++..+.. ..++..+|.++...|++++|+.+|++++++ .+....++..+|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRV 66 (568)
T ss_dssp -------------------CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 478999999999999887665 678899999999999999999999999984 34457899999999
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 007930 460 CLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKER 539 (584)
Q Consensus 460 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~ 539 (584)
+...|++++|+.+|++++++ +|+...++..+|.++...|++++|+.+|++++++ +|+...++.+
T Consensus 67 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~ 130 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQ 130 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 99999999999999999999 8888899999999999999999999999999998 8888999999
Q ss_pred HHHHHHHh---chHHHHHHHHHHHHHhhhhhh
Q 007930 540 LAELLKET---GRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 540 l~~~~~~~---g~~~~A~~~~l~~~~~~~~~~ 568 (584)
++.++..+ |++++|. ..++.+++.+|..
T Consensus 131 l~~~~~~~~~~g~~~~A~-~~~~~al~~~p~~ 161 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLS-AQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHTTCCTTHHHHH-HHHHHHHHHTCCC
T ss_pred HHHHHHHhhccccHHHHH-HHHHHHHhcCCcc
Confidence 99999999 9999999 8888888877764
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.58 E-value=1.8e-13 Score=117.07 Aligned_cols=174 Identities=16% Similarity=0.071 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Q 007930 300 EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA 379 (584)
Q Consensus 300 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 379 (584)
+|+.+|+++.+. ..+.+++.+|.+|...+++++|+.+|+++.+.. ...+++++|.+|..
T Consensus 4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----------~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----------DGDALALLAQLKIR 62 (212)
T ss_dssp CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHc
Confidence 567777777653 457789999999999999999999999998752 25789999999998
Q ss_pred hc----CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHcCCCCCc--hH
Q 007930 380 LN----EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV----VGRYGEARSSFESAVVKLRASGESKSA--FF 449 (584)
Q Consensus 380 ~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~--~~ 449 (584)
+ ++++|+.+|+++.+. .. ..++.++|.+|.. .+++++|+.+|+++.+. .+ ..
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~--g~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~~~~ 124 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA--GS-------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------SESDAA 124 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT--TC-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------TTSHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------CCCcch
Confidence 7 899999999999642 11 5677899999988 88999999999999873 22 34
Q ss_pred HHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL-G-----RVEDAIEILEYIL 519 (584)
Q Consensus 450 ~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a~ 519 (584)
+.+++++|.+|.. .+++++|+.+|+++.+. +....++++||.+|... | ++++|+.+|+++.
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 6899999999999 88999999999999874 23345899999999875 3 8999999999999
Q ss_pred HH
Q 007930 520 KV 521 (584)
Q Consensus 520 ~~ 521 (584)
+.
T Consensus 196 ~~ 197 (212)
T 3rjv_A 196 LE 197 (212)
T ss_dssp HH
T ss_pred Hc
Confidence 86
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.58 E-value=1e-14 Score=115.97 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=94.6
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
.+....+++.+|.++...|++++|+.+|++++.+ .|....+|.++|.++...|++++|+..|++++++
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 4445788899999999999999999999999996 4455789999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+|+.+.+++++|.+|..+|++++|+..|++++++
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999998
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.58 E-value=9.9e-14 Score=118.70 Aligned_cols=182 Identities=12% Similarity=-0.019 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 007930 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYV 420 (584)
Q Consensus 341 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (584)
.+|+.+|+++.+.. .+.+++.+|.+|...+++++|+.+|+++.+. ++ ..+++++|.+|..
T Consensus 3 ~eA~~~~~~aa~~g-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~----~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG-----------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GD----GDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHCC-----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHHc
Confidence 35778888887651 2678999999999999999999999999764 21 5678899999998
Q ss_pred hc----cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHHhCCCCC--c
Q 007930 421 VG----RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ----LYRINEATELFEEARGVLEQECGSCHL--D 490 (584)
Q Consensus 421 ~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~--~ 490 (584)
+ ++++|+.+|+++.+. ....+++++|.+|.. .+++++|+.+|+++.+. .+ .
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~~~ 123 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------SESDA 123 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------TTSHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------CCCcc
Confidence 7 999999999999762 235789999999998 89999999999999986 44 3
Q ss_pred hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh-c-----hHHHHHHHHHHH
Q 007930 491 TLGVYSNLAATYDA----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET-G-----RARNRKGKSLEN 560 (584)
Q Consensus 491 ~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~l~~ 560 (584)
.+.++++||.+|.. .+++++|+.+|+++++. +....++++||.+|... | ++++|+ ..++.
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~-~~~~~ 193 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKAL-HWLNV 193 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHH-HHHHH
Confidence 57899999999999 89999999999999884 34456899999999865 3 899999 89999
Q ss_pred HHhhhhhhhHH
Q 007930 561 LLDSNAYRVKK 571 (584)
Q Consensus 561 ~~~~~~~~~~~ 571 (584)
+.+........
T Consensus 194 A~~~g~~~A~~ 204 (212)
T 3rjv_A 194 SCLEGFDTGCE 204 (212)
T ss_dssp HHHHTCHHHHH
T ss_pred HHHcCCHHHHH
Confidence 88776655443
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.57 E-value=2.9e-14 Score=123.58 Aligned_cols=217 Identities=15% Similarity=0.080 Sum_probs=171.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHH-------HHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 286 VSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRL-------ADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 286 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
+..|.-+ ..+++..|...|.+++.+ +|..+.+|.++ +.++...++..+++..+.+.+.+.....
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l 81 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTL 81 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGG
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 4444454 589999999999999999 89999999999 8999999999999999999988654322
Q ss_pred CCCCh------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHH
Q 007930 359 PATAP------------EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGE 426 (584)
Q Consensus 359 ~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 426 (584)
..... .....+...++.++...|++++|.+.|...+.. .+... ..+.+|.++...+++++
T Consensus 82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------~p~~~-~~~~~a~l~~~~~r~~d 153 (282)
T 4f3v_A 82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-------GSEHL-VAWMKAVVYGAAERWTD 153 (282)
T ss_dssp CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------TCHHH-HHHHHHHHHHHTTCHHH
T ss_pred hhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCchH-HHHHHHHHHHHcCCHHH
Confidence 11000 112456677899999999999999999876542 22224 77899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHH
Q 007930 427 ARSSFESAVVKLRASGESKSAF-FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD-TLGVYSNLAATYDA 504 (584)
Q Consensus 427 A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~ 504 (584)
|+.+|+++... .++. ...+++.+|.++..+|++++|+.+|++++.. +..|. ...+++.+|.++..
T Consensus 154 A~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g------~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 154 VIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS------PAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------TTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC------CCCccccHHHHHHHHHHHHH
Confidence 99999866542 1222 2458999999999999999999999999742 22255 77899999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 505 LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 505 ~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
+|+.++|...|++++.. +|+ ..+...|.
T Consensus 221 lGr~deA~~~l~~a~a~--------~P~-~~~~~aL~ 248 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTT--------HPE-PKVAAALK 248 (282)
T ss_dssp HTCHHHHHHHHHHHHHH--------SCC-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--------CCc-HHHHHHHh
Confidence 99999999999999998 787 66655553
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.57 E-value=5.2e-14 Score=126.77 Aligned_cols=170 Identities=14% Similarity=0.035 Sum_probs=148.6
Q ss_pred cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 320 HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
.|.....+..+|..+...|++++|+..|++++..... ...++..+|.++...|++++|+..+++++...+.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 3667788899999999999999999999999998633 3678999999999999999999999998765432
Q ss_pred CCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
........+..+...++.++|+..+++++.. .|....+++.+|.++...|++++|+..|++++..
T Consensus 184 -------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 184 -------TRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp -------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 2344556677788899999999999999985 4455789999999999999999999999999999
Q ss_pred HHHHhCCCCCch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 480 LEQECGSCHLDT--LGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 480 ~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+|+. ..++..++.++...|+.++|...|++++..
T Consensus 249 --------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 249 --------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp --------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 7777 789999999999999999999999999875
No 126
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=3.9e-11 Score=119.31 Aligned_cols=413 Identities=9% Similarity=-0.006 Sum_probs=260.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHH
Q 007930 88 PNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDT 167 (584)
Q Consensus 88 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 167 (584)
..+-+..+++++.. +|.....+..+.......++++.+...|++++..++. .. ..|......
T Consensus 48 ~~d~i~~lE~~l~~---------np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-----~~----~lW~~Yi~~ 109 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE---------QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-----MA----NIWCMRLSL 109 (679)
T ss_dssp CSCHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CH----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHH---------CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-----CH----HHHHHHHHH
Confidence 45566677777764 4556778888888888899999999999999988632 22 236666677
Q ss_pred HHhcCC---hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCH----HH----HHHHHHHHHHHHHH-hCC
Q 007930 168 CSSMGL---LDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQF----DE----AENLCKKILEIHRE-HGH 235 (584)
Q Consensus 168 ~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~~~~-~~~ 235 (584)
-...|+ ++.+...|++++.... .+| ....|..........++. ++ ....|++++..... ..
T Consensus 110 E~~~~~~~~~~~v~~lfeRal~~~~-----~~~-sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~- 182 (679)
T 4e6h_A 110 EFDKMEELDAAVIEPVLARCLSKEL-----GNN-DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP- 182 (679)
T ss_dssp HHTC--CCCHHHHHHHHHHHTCSSS-----CCC-CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS-
T ss_pred HHhhCCcchHHHHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc-
Confidence 778888 9999999999988620 002 233444444444444433 33 44677777765433 22
Q ss_pred CCCHHHHHHHHHHHHHH---------HHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-------------
Q 007930 236 SASLEEAADRRLMALVY---------EAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYM------------- 293 (584)
Q Consensus 236 ~~~~~~a~~~~~l~~~~---------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~------------- 293 (584)
.+. .+|....... ..+++.+.+...|.+++.+ + ......++......-.
T Consensus 183 -~s~---~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i----P-~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e 253 (679)
T 4e6h_A 183 -KSI---QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ----P-MDCLESMWQRYTQWEQDVNQLTARRHIGE 253 (679)
T ss_dssp -SCH---HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS----C-CSSHHHHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred -cch---HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC----c-cHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 221 2233333222 2345677788888887642 1 1112222211111111
Q ss_pred HcCChhHHHHHHHHHHHHHHHhhc--CCc---------c-------cHHHHHHHHHHHHHHcc-------cHHHHHHHHH
Q 007930 294 SLCRFDEAIFSYQKGLTVFKATRG--EDH---------L-------SVASIFIRLADLYYRIG-------KLRESKSYCE 348 (584)
Q Consensus 294 ~~g~~~~A~~~~~~al~~~~~~~~--~~~---------~-------~~~~~~~~la~~~~~~g-------~~~~A~~~~~ 348 (584)
...+|+.|...+.+.-.+...+.. +.. | .....|......-...+ ..+.....|+
T Consensus 254 ~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye 333 (679)
T 4e6h_A 254 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYM 333 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 112333344443332222111110 000 1 12233333333322221 1344567899
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHH
Q 007930 349 NALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEAL-KLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEA 427 (584)
Q Consensus 349 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 427 (584)
+++.... .....|...+..+...|+.++|. ..|++|+..+|.. ..++...+.+....|++++|
T Consensus 334 ~aL~~~p---------~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 334 QAAQHVC---------FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp HHHHHTT---------TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcC---------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHH
Confidence 9998863 34688999999999999999997 9999999876654 45667889999999999999
Q ss_pred HHHHHHHHHHHHHc-------CCCC-------CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHH
Q 007930 428 RSSFESAVVKLRAS-------GESK-------SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLG 493 (584)
Q Consensus 428 ~~~~~~a~~~~~~~-------~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 493 (584)
...|++++...... .+.. ......+|...+.+....|+.+.|...|.+|++.. .+....
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~ 470 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPD 470 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChH
Confidence 99999999864210 0100 01245578888888888999999999999998751 111234
Q ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhh
Q 007930 494 VYSNLAATYDALGR-VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNA 566 (584)
Q Consensus 494 ~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~ 566 (584)
++...|.+....|+ .+.|...|+++++. .|+....+...+......|+.+.|. ..++.++...+
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR-~lferal~~~~ 535 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVK-SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHTTTSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHH-HHHHHHHHhcC
Confidence 56666776666654 89999999999998 4556666777888888999999999 88999887666
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.56 E-value=2.9e-14 Score=142.51 Aligned_cols=165 Identities=10% Similarity=-0.005 Sum_probs=128.5
Q ss_pred cccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 007930 337 IGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGV 416 (584)
Q Consensus 337 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 416 (584)
.|++++|+..++++++... ....++..+|.++...|++++|+.+|+++++..+.. ..++..+|.
T Consensus 2 ~g~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP---------QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-------PEAVARLGR 65 (568)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-------HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHH
Confidence 4789999999999998753 336789999999999999999999999999876554 678889999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Q 007930 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYS 496 (584)
Q Consensus 417 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 496 (584)
++...|++++|+.+|++++++ .+....++..+|.++...|++++|+.+|++++++ +|....++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 129 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 999999999999999999986 2334688999999999999999999999999999 888889999
Q ss_pred HHHHHHHHc---CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 497 NLAATYDAL---GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 497 ~la~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
.+|.++..+ |++++|...++++++. +|.....+..++
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 169 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ--------GVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHH--------TCCCSCHHHHTT
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhc--------CCcccChHHHhC
Confidence 999999999 9999999999999997 555444444444
No 128
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.53 E-value=2.3e-13 Score=105.42 Aligned_cols=110 Identities=18% Similarity=0.348 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
++.+.++.++|..++..|+|++|+.+|++++++ .|....++.++|.+|..+|++++|+..+++++++.+..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 355677889999999999999999999999998 78889999999999999999999999999999998763
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLE 398 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 398 (584)
.......+.++.++|.++..+|++++|+++|++++...+
T Consensus 76 -~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 76 -RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred -chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 455677788999999999999999999999999998643
No 129
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.52 E-value=4.9e-13 Score=103.54 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
..+.++.++|..++..|++++|+.+|++++++ +|....++.++|.+|..+|++++|+..+++++++......
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 35678899999999999999999999999999 8899999999999999999999999999999998655332
Q ss_pred CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 528 TANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 528 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
.++....++.++|.++..+|++++|+ ..++.++...|+
T Consensus 78 -~~~~~a~~~~~lg~~~~~~~~~~~A~-~~~~kal~~~~~ 115 (127)
T 4gcn_A 78 -DYKLIAKAMSRAGNAFQKQNDLSLAV-QWFHRSLSEFRD 115 (127)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSCC
T ss_pred -hhHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCcC
Confidence 35566789999999999999999999 888888876554
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.52 E-value=7e-14 Score=118.57 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=114.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC------
Q 007930 373 ISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS------ 446 (584)
Q Consensus 373 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------ 446 (584)
.+......|+++++.+.+.......... +..+..+|..+...|++++|+.+|++++.+.........
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQS-------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 3444455566666665555443332222 556667788888888888888888887775322110000
Q ss_pred --chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 447 --AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 447 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
.....++.++|.++...|++++|+.++++++.+ .|....+++.+|.++..+|++++|+.+|++++++
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--- 151 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--- 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---
Confidence 001378999999999999999999999999998 7888899999999999999999999999999998
Q ss_pred HhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 525 KLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
+|....++..++.++..+|+..++....+..++.
T Consensus 152 -----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 152 -----NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -----STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999987555555543
No 131
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.52 E-value=7.9e-13 Score=104.32 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 35678999999999999999999999875 2223578889999999999999999999999988 6
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
|....++..+|.++...|++++|+.++++++.. .|....++..++.++...|++++|. ..++.++...|.
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~ 135 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHccCCC
Confidence 777789999999999999999999999999997 6777889999999999999999999 888888876664
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.51 E-value=1.6e-13 Score=126.37 Aligned_cols=163 Identities=14% Similarity=0.063 Sum_probs=140.9
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCC-------CHHHH
Q 007930 170 SMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSA-------SLEEA 242 (584)
Q Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~a 242 (584)
.++++++|+..+++++.. .|..+.++..+|.++...|++++|+..|++++++.+...... ....+
T Consensus 125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 196 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 196 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 567888899999888887 688899999999999999999999999999999987653211 12235
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
.++.++|.++...|++++|+..|++++.+ .+....+++++|.++..+|++++|+..|++++++ .|.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~ 262 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPN 262 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCC
Confidence 77999999999999999999999999886 5667889999999999999999999999999998 688
Q ss_pred HHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHH
Q 007930 323 VASIFIRLADLYYRIGKLRES-KSYCENALRVC 354 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 354 (584)
...++..++.++..+|++++| ...|++++...
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999998 45677666543
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.51 E-value=1.7e-13 Score=109.32 Aligned_cols=108 Identities=17% Similarity=0.039 Sum_probs=100.1
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+....+++.+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+.+|++++.+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---- 84 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4556788999999999999999999999999999 8888999999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|+...+++++|.++..+|++++|. ..++.++...|+.+.
T Consensus 85 ----~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 85 ----DIXEPRFPFHAAECLLQXGELAEAE-SGLFLAQELIANXPE 124 (148)
T ss_dssp ----STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTTCGG
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcCCCc
Confidence 8889999999999999999999999 999999988776443
No 134
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.51 E-value=6e-13 Score=124.97 Aligned_cols=126 Identities=11% Similarity=0.101 Sum_probs=116.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHH
Q 007930 79 RETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKF 158 (584)
Q Consensus 79 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (584)
......|+ |++|+..+++++++.++.. ++.+|..+.++.++|.+|..+|+|++|+.++++++.+.....|+++|.+.
T Consensus 306 ~~~~~~g~-~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a- 382 (433)
T 3qww_A 306 RRAKHYKS-PSELLEICELSQEKMSSVF-EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA- 382 (433)
T ss_dssp HHHTTTSC-HHHHHHHHHHHHHHHTTTB-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-
T ss_pred HHhhhccC-HHHHHHHHHHHHHHhhCcc-ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH-
Confidence 33344677 9999999999999999988 77789999999999999999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLA 207 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 207 (584)
..++++|.+|..+|++++|+.+|++|+++....+|++||.+..+..+|.
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 7799999999999999999999999999999999999999998877664
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=9.2e-13 Score=102.33 Aligned_cols=122 Identities=12% Similarity=0.044 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
.+..+..+|..+...|++++|+.+|++++.+ .+....++.++|.++...|++++|+..+++++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3567789999999999999999999999986 3334689999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
+|....++..+|.++..+|++++|+..|++++++...... .|....++..++.+...
T Consensus 68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCC--chhHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999999999433322 27777888888777654
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.50 E-value=2.3e-13 Score=108.62 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
....++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------- 84 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM------- 84 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence 3677889999999999999999999999985 3445688999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+|+...+++.+|.+|..+|++++|+.+|++++++.
T Consensus 85 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 -DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp -STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78888999999999999999999999999999983
No 137
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.50 E-value=2.1e-11 Score=109.14 Aligned_cols=230 Identities=11% Similarity=0.018 Sum_probs=188.2
Q ss_pred HHcCChh-HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHHhcCCCCC
Q 007930 293 MSLCRFD-EAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK----------LRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 293 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~ 361 (584)
...|+++ +|+..+.+++.+ +|....+++..+.+....+. +++++.++..++....+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK----- 106 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----- 106 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-----
Confidence 4567776 789999999988 78999999999999988776 68899999999887543
Q ss_pred ChHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEALNE--HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGR-YGEARSSFESAVVKL 438 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~ 438 (584)
...+|...+.++...|+ +++++.++.++++..+.+ ..++...+.+....|. ++++++++.++++.
T Consensus 107 ----ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~- 174 (331)
T 3dss_A 107 ----SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR- 174 (331)
T ss_dssp ----CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred ----CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-
Confidence 46899999999999984 899999999999988777 6788889999999998 69999999999985
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhh--------------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQL--------------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA 504 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 504 (584)
++....+|..++.++... +.++++++++.+++.+ +|+...+++.+..++..
T Consensus 175 -------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 175 -------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp -------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHS
T ss_pred -------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHh
Confidence 344567899999988877 5689999999999999 89998999877666655
Q ss_pred c-----------CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH---hchHHHHHHHHHHHHHhhhhhhhH
Q 007930 505 L-----------GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE---TGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 505 ~-----------g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
. +.++++++++++++++ .|++..++..++.+... .|..++.. ..+..+++.+|.+..
T Consensus 240 ~~~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 240 GSGRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPMRAA 310 (331)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHH-HHHHHHHHHCGGGHH
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHH-HHHHHHHHhCcchhh
Confidence 4 3567888888888887 78887777666655443 46666766 899999988887655
Q ss_pred H
Q 007930 571 K 571 (584)
Q Consensus 571 ~ 571 (584)
.
T Consensus 311 ~ 311 (331)
T 3dss_A 311 Y 311 (331)
T ss_dssp H
T ss_pred H
Confidence 3
No 138
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.50 E-value=1.7e-12 Score=102.33 Aligned_cols=131 Identities=22% Similarity=0.288 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCc
Q 007930 368 NGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSA 447 (584)
Q Consensus 368 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 447 (584)
.++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.. .+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~ 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP 66 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CC
Confidence 467889999999999999999999998875433 567788999999999999999999999875 12
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|..++++++..
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 23567889999999999999999999999998 6777789999999999999999999999999987
No 139
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.48 E-value=6.6e-13 Score=108.38 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=115.4
Q ss_pred ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC---CC-------CchHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 007930 405 STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE---SK-------SAFFGIVLNQMGLACLQLYRINEATELFE 474 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (584)
...+..+...|..++..|++++|+..|.+++.+...... .. .+....++.++|.++...|++++|+..++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345677889999999999999999999999998654321 11 34456899999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH-HHHHHHHHHHHHhchHHHH
Q 007930 475 EARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDID-DEKERLAELLKETGRARNR 553 (584)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A 553 (584)
+++.+ +|....+++.+|.+|..+|++++|+..|++++.+ +|++. .+...++.+....++..+.
T Consensus 88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 8899999999999999999999999999999999 89888 6677888888877776655
Q ss_pred H
Q 007930 554 K 554 (584)
Q Consensus 554 ~ 554 (584)
.
T Consensus 152 ~ 152 (162)
T 3rkv_A 152 S 152 (162)
T ss_dssp S
T ss_pred H
Confidence 4
No 140
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.48 E-value=8.3e-13 Score=124.49 Aligned_cols=139 Identities=15% Similarity=0.075 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
..++.....+..+|+ +++|+..+++++++.++.. ++.++..+.++.++|.+|..+|+|++|+.++++++.+.....++
T Consensus 288 ~~ll~~ie~~~~~g~-~~~a~~~~~~~L~~~~~~l-g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 288 QESLKKIEELKAHWK-WEQVLAMCQAIISSNSERL-PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHTCSSCCC-CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhhcc-HHHHHHHHHHHHHhccCcC-CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 345555666778898 9999999999999888877 67789999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQA 213 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 213 (584)
++|... ..++++|.+|..+|++++|+.++++++++....+|++||....++.+|+.+....
T Consensus 366 ~Hp~~a-~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 366 SHPVRG-VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp SCHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred CChHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999876 6799999999999999999999999999999999999999999999999887654
No 141
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.48 E-value=7.9e-13 Score=113.72 Aligned_cols=143 Identities=12% Similarity=-0.012 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..++.+|.++...|++++|+..|++++. . ...++..+|.++...|++++|+.+|++++.+ +
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~--------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 67 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD--------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D 67 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS--------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC--------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 4567899999999999999999998852 1 2578999999999999999999999999998 7
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKL--------GTANPDIDDEKERLAELLKETGRARNRKGKSLEN 560 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~ 560 (584)
|....++..+|.++...|++++|+.+|++++++..... ....|....++.++|.++..+|++++|. ..++.
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~ 146 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLAL 146 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHHHH
Confidence 88889999999999999999999999999998621100 0023456799999999999999999999 99999
Q ss_pred HHhhhhhhhHH
Q 007930 561 LLDSNAYRVKK 571 (584)
Q Consensus 561 ~~~~~~~~~~~ 571 (584)
++...|+....
T Consensus 147 al~~~p~~~~~ 157 (213)
T 1hh8_A 147 ATSMKSEPRHS 157 (213)
T ss_dssp HHTTCCSGGGG
T ss_pred HHHcCcccccc
Confidence 99887755433
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.47 E-value=4.8e-12 Score=103.89 Aligned_cols=132 Identities=18% Similarity=0.083 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Q 007930 407 IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGS 486 (584)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 486 (584)
.+..+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------- 76 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 76 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 3567789999999999999999999999986 2334688999999999999999999999999998
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH--HHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEK--ERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
.|....++..+|.++...|++++|+.+|++++.+ +|....++ ..++..+...|++++|. ..++....
T Consensus 77 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~ 145 (166)
T 1a17_A 77 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDEHKRS 145 (166)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH-HcccchHH
Confidence 7888899999999999999999999999999998 66666666 44555588999999999 55555443
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.47 E-value=1.1e-13 Score=133.34 Aligned_cols=161 Identities=18% Similarity=0.206 Sum_probs=132.1
Q ss_pred HhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC-------CCchHHH
Q 007930 379 ALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES-------KSAFFGI 451 (584)
Q Consensus 379 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~ 451 (584)
..+++++|+..++.++...+.. +..+..+|.++...|++++|+..|++++.+....... ..+....
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~-------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQ-------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHH-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 4566777777777777665554 7788899999999999999999999999975432100 0112357
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
++.++|.++..+|++++|+.+|++++++ +|....+++++|.+|..+|++++|+.+|++++++ +|
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NP 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Confidence 8999999999999999999999999999 8888999999999999999999999999999998 89
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLL 562 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~ 562 (584)
++..++..++.++..+|++++|....++.++
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998866655554
No 144
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.46 E-value=4.1e-12 Score=104.26 Aligned_cols=138 Identities=16% Similarity=0.043 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
...+..+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++.+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 3457789999999999999999999999999986654 678889999999999999999999999986
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH--HHHHHHHcCChHHHHHHHHHHHHH
Q 007930 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSN--LAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+....++..+|.++...|++++|+.+|++++++ .|....++.. ++..+...|++++|+..+.++..+
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 2334678999999999999999999999999998 6666666644 455588899999999999999888
Q ss_pred HHH
Q 007930 522 REE 524 (584)
Q Consensus 522 ~~~ 524 (584)
...
T Consensus 147 ~~~ 149 (166)
T 1a17_A 147 VDS 149 (166)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.46 E-value=2.2e-12 Score=101.40 Aligned_cols=123 Identities=13% Similarity=0.172 Sum_probs=111.5
Q ss_pred CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
..+.....+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--- 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 34566788899999999999999999999999974 3334688999999999999999999999999998
Q ss_pred HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhch
Q 007930 483 ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
.|....++..+|.++...|++++|+.+|++++.+ +|....++..++.++..+|+
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 7888899999999999999999999999999998 89999999999999998774
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.45 E-value=3.8e-13 Score=120.58 Aligned_cols=195 Identities=12% Similarity=0.086 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
+..+..+|..++..|++++|+..|++++... +..+ .++..+|.++...|++++|+..+++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA----VYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 5678899999999999999999999999874 3333 45899999999999999999999999988
Q ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 195 SDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIA 274 (584)
Q Consensus 195 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 274 (584)
+|....+++.+|.++...|++++|+..|++++++.+......... . +..+ .......+. .... ..
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~-~--~~~~--~~~~~~~~~------~~~~---~~ 132 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD-I--PSAL--RIAKKKRWN------SIEE---RR 132 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH-H--HHHH--HHHHHHHHH------HHHH---TC
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH-H--HHHH--HHHHHHHHH------HHHH---HH
Confidence 788889999999999999999999999999999999765321111 1 1111 111111111 1100 11
Q ss_pred cCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHH
Q 007930 275 NGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI-GKLRESKSYCENALRV 353 (584)
Q Consensus 275 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 353 (584)
....+.. ...++.++ .|++++|++.++++++. .|........++.++... +.+++|...|.++.+.
T Consensus 133 ~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 133 IHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2223332 33344443 68999999999988876 566677777777777766 7788999999887654
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.45 E-value=3.7e-13 Score=120.65 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCC
Q 007930 282 AAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPAT 361 (584)
Q Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 361 (584)
+..+..+|..+...|++++|+..|++++.. .|....++.++|.++...|++++|+..+++++++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------- 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD------- 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence 567788999999999999999999999998 68889999999999999999999999999999874
Q ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS 441 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 441 (584)
+....+++.+|.++...|++++|+..|++++++.++............ .... ++....... ...
T Consensus 69 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~----~~~~------~~~~~~~~~----~~~ 132 (281)
T 2c2l_A 69 --GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA----LRIA------KKKRWNSIE----ERR 132 (281)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH----HHHH------HHHHHHHHH----HTC
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH----HHHH------HHHHHHHHH----HHH
Confidence 234678999999999999999999999999999987643222221111 1111 111111111 111
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 007930 442 GESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL-GRVEDAIEILEYILK 520 (584)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 520 (584)
.. ..+ .+...++.++ .|++++|++.++++++. .|........++.++... +.+++|...|.++.+
T Consensus 133 ~~-~~~---~i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 133 IH-QES---ELHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CC-CCC---HHHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred Hh-hhH---HHHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11 122 3344445543 68999999999999987 777777777787777766 678888888887765
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.45 E-value=2.2e-10 Score=102.57 Aligned_cols=236 Identities=9% Similarity=-0.040 Sum_probs=185.4
Q ss_pred HhccHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 254 AKADYE-SALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR----------FDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 254 ~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
..|+++ +|+..+.+++. ..|....+++..+.++...+. +++++.++..++.. +|.
T Consensus 41 ~~~e~s~eaL~~t~~~L~------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PK 106 (331)
T 3dss_A 41 QAGELDESVLELTSQILG------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPK 106 (331)
T ss_dssp HTTCCSHHHHHHHHHHHT------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTT
T ss_pred HcCCCCHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CCC
Confidence 345554 78898888876 478888899999999887776 67888888888877 789
Q ss_pred HHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHh
Q 007930 323 VASIFIRLADLYYRIGK--LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNE-HEEALKLLQKAMKLLED 399 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~ 399 (584)
...++...+.++...|+ +++++.++.++++...+ ...+|...+.+....|. ++++++++.+++...+.
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr---------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER---------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 99999999999999994 89999999999998644 36789999999999998 69999999999988766
Q ss_pred CCCCcccHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh--
Q 007930 400 TPGYHSTIAGIEAQMGVMLYVV--------------GRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL-- 463 (584)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 463 (584)
. ..++..++.++... +.++++++++.+++.+ .|....+|+.+..++...
T Consensus 178 N-------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 178 N-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp C-------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHSSSC
T ss_pred C-------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccC
Confidence 5 56777888888777 5689999999999986 344456776555555544
Q ss_pred ---------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 464 ---------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYD---ALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 464 ---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
+.++++++++++++++ .|+..-++..++.+.. ..|..++...++.+.+++ +|
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------Dp 306 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------DP 306 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------CG
T ss_pred ccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------Cc
Confidence 4578999999999998 7776555555554433 357788999999999998 89
Q ss_pred hHHHHHHHHHHH
Q 007930 532 DIDDEKERLAEL 543 (584)
Q Consensus 532 ~~~~~~~~l~~~ 543 (584)
....-|..++.-
T Consensus 307 ~r~~~y~d~~~~ 318 (331)
T 3dss_A 307 MRAAYLDDLRSK 318 (331)
T ss_dssp GGHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 876666555443
No 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.44 E-value=3e-12 Score=99.88 Aligned_cols=117 Identities=14% Similarity=0.001 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC--C--CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC--H--LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
+..+.++|..++..|++++|+..|++++++........ + |....+|.++|.++..+|++++|+..|+++++++.+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 56788999999999999999999999999932100000 0 0123499999999999999999999999999986655
Q ss_pred hCCCChhHHHHH----HHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 526 LGTANPDIDDEK----ERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 526 ~~~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
. .-+|+...+| +++|.++..+|++++|+ .+++.+++..|++
T Consensus 91 ~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl-~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 G-ELNQDEGKLWISAVYSRALALDGLGRGAEAM-PEFKKVVEMIEER 135 (159)
T ss_dssp C-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHC
T ss_pred c-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHH-HHHHHHHhcCCCc
Confidence 4 4478999999 99999999999999999 9999999888875
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.44 E-value=8.5e-12 Score=97.29 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC----CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE----DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
.+..+.+.|..++..|+|++|+..|++++++....... ..+....+|.++|.++..+|++++|+..++++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 35567889999999999999999999999984331000 01224559999999999999999999999999998433
Q ss_pred CCCCCChHHHHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHH
Q 007930 357 PAPATAPEEIANGL----TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGI 410 (584)
Q Consensus 357 ~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 410 (584)
. +.-.|+...+| +++|.++..+|++++|+..|++++++.++..+....+..+
T Consensus 90 ~--~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 90 R--GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp H--CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred c--ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 2 23335567788 9999999999999999999999999999987766555444
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.44 E-value=2.4e-12 Score=105.27 Aligned_cols=115 Identities=15% Similarity=0.020 Sum_probs=100.8
Q ss_pred CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 403 YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
.....+..+..+|.++...|++++|+.+|++++.+ .+....++.++|.++...|++++|+.+|++++++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 34556788899999999999999999999999996 3334689999999999999999999999999999
Q ss_pred HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 483 ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
+|....+++.+|.+|..+|++++|+.+|++++++ +|+...++...+
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~ 120 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA--------EGNGGSDAMKRG 120 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HSSSCCHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 8888999999999999999999999999999998 565555444443
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.44 E-value=3.1e-12 Score=101.58 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=93.3
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQE 483 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 483 (584)
.+.....++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3444677889999999999999999999999985 3445688999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 007930 484 CGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 484 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 522 (584)
+|+...+++.+|.++..+|++++|+.+|++++++.
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 78888899999999999999999999999999983
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.44 E-value=6.2e-13 Score=112.70 Aligned_cols=165 Identities=13% Similarity=0.048 Sum_probs=119.9
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCccc--
Q 007930 329 RLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHST-- 406 (584)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-- 406 (584)
..+......|+++++.+.+....... ...+..+..+|..+...|++++|+.+|++++.+.+........
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEK---------VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL 79 (198)
T ss_dssp -------------CCCSGGGCCHHHH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhH
Confidence 34555566777777777666544332 4457788999999999999999999999999887665322111
Q ss_pred -------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 407 -------IAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 407 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
...++.++|.++...|++++|+.++++++.+ .+....+++.+|.++...|++++|+.+|++++++
T Consensus 80 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 80 LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1378889999999999999999999999996 2334688999999999999999999999999999
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAI-EILEYI 518 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a 518 (584)
.|....++..++.++...++..++. ..|.+.
T Consensus 152 --------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 152 --------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp --------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred --------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999988887776 334443
No 154
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.43 E-value=3.2e-12 Score=109.94 Aligned_cols=137 Identities=18% Similarity=0.149 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 367 ANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 367 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
...++.+|.++...|++++|+..|++++. . ...++..+|.++...|++++|+.+|++++.+ .
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~---~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 67 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD---P-------HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D 67 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS---C-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC---C-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 45678899999999999999999998841 1 1568889999999999999999999999986 2
Q ss_pred chHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 447 AFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC--------GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
+....++..+|.++...|++++|+..|+++++...... ....|....++..+|.++...|++++|+.+|+++
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33468899999999999999999999999999721100 0013456689999999999999999999999999
Q ss_pred HHH
Q 007930 519 LKV 521 (584)
Q Consensus 519 ~~~ 521 (584)
+++
T Consensus 148 l~~ 150 (213)
T 1hh8_A 148 TSM 150 (213)
T ss_dssp HTT
T ss_pred HHc
Confidence 997
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.1e-12 Score=98.64 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 449 FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT 528 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 528 (584)
.+..+..+|..+...|++++|+.+|++++++ .|....++.++|.++..+|++++|+..+++++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4678899999999999999999999999999 8888999999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 529 ANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
+|....++..+|.++..+|++++|. ..++.++..+
T Consensus 68 -~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~ 102 (126)
T 3upv_A 68 -DPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKD 102 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHhC
Confidence 8999999999999999999999999 9999998887
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.43 E-value=5.5e-12 Score=98.72 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh
Q 007930 405 STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
+.....+..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 75 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----
Confidence 344677889999999999999999999999985 2233678999999999999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchH
Q 007930 485 GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 485 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (584)
.|....++..+|.++...|++++|+.++++++.+ +|....++..++.++..+|++
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred ---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 7777899999999999999999999999999998 788889999999999999875
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.42 E-value=4.3e-12 Score=100.72 Aligned_cols=108 Identities=16% Similarity=0.071 Sum_probs=100.0
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+.....++.+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+.+|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4556788999999999999999999999999998 8888999999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|+...+++++|.++..+|++++|. ..++.++...|+...
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAE-SGFYSARALAAAQPA 121 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHTCGG
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCcc
Confidence 8889999999999999999999999 899999988776543
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.41 E-value=3.9e-12 Score=97.42 Aligned_cols=100 Identities=21% Similarity=0.094 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
.++.+|..+...|++++|+..|+++++. +|....+++.+|.++...|++++|+..|++++++ +|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 4678999999999999999999999999 8999999999999999999999999999999999 89
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhh
Q 007930 532 DIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+...++..+|.++...|++++|. ..++.++..+|+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P~~ 118 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAAL-ASLRAWLLSQPQY 118 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcCC
Confidence 99999999999999999999999 8999999887754
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.41 E-value=4e-11 Score=107.70 Aligned_cols=249 Identities=8% Similarity=-0.034 Sum_probs=189.7
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHhcCC
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIG-KLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 358 (584)
....++..+..+....+..++|+..+.+++.+ +|....+++..+.++...| .+++++.++.+++....+
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-- 121 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-- 121 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--
Confidence 33445555555556666778899999999998 7889999999999999999 599999999999987544
Q ss_pred CCCChHHHHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHH--------HHH
Q 007930 359 PATAPEEIANGLTEISAIYEAL-N-EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYG--------EAR 428 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~ 428 (584)
...+|+..+.++... + +++++++++.++++..+++ ..++...+.+....|.++ +++
T Consensus 122 -------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 122 -------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp -------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 367889999999888 7 8899999999988776655 667788888888888887 899
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC-------HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 007930 429 SSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR-------INEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT 501 (584)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 501 (584)
++++++++. ++....+|..++.++...++ ++++++++.+++.+ +|....++..+..+
T Consensus 188 e~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~L 251 (349)
T 3q7a_A 188 DWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGF 251 (349)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 999999885 34456899999999998887 79999999999999 99999999999999
Q ss_pred HHHcCChHH------------HHH-HHHHHHHHHHHHhCC-----CChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHH-
Q 007930 502 YDALGRVED------------AIE-ILEYILKVREEKLGT-----ANPDIDDEKERLAELLKETGRARNRKGKSLENLL- 562 (584)
Q Consensus 502 ~~~~g~~~~------------A~~-~~~~a~~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~- 562 (584)
+...|+... .+. .+....+.+....+. ..+....++.-|+.+|...|+.++|. +.++.+.
T Consensus 252 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~-~~~~~l~~ 330 (349)
T 3q7a_A 252 LKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA-KVFEKLSS 330 (349)
T ss_dssp HHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred HHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHh
Confidence 998887511 000 011222222222222 12567789999999999999999999 7777776
Q ss_pred hhhhhhh
Q 007930 563 DSNAYRV 569 (584)
Q Consensus 563 ~~~~~~~ 569 (584)
+.+|-+.
T Consensus 331 ~~dpir~ 337 (349)
T 3q7a_A 331 EYDQMRA 337 (349)
T ss_dssp TTCGGGH
T ss_pred hhChHHH
Confidence 4455433
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.40 E-value=6.9e-12 Score=102.53 Aligned_cols=108 Identities=21% Similarity=0.171 Sum_probs=100.9
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
.+..+..+..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 3456789999999999999999999999999999 8888999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 526 LGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|....+++++|.++..+|++++|+ ..++.++..+|+...
T Consensus 75 ----~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 75 ----DPKYSKAWSRLGLARFDMADYKGAK-EAYEKGIEAEGNGGS 114 (164)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHSSSCC
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCchH
Confidence 8999999999999999999999999 999999988887655
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.39 E-value=2e-11 Score=95.43 Aligned_cols=125 Identities=21% Similarity=0.176 Sum_probs=110.8
Q ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Q 007930 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS 441 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 441 (584)
..+.....+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI---- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc----
Confidence 456678899999999999999999999999999886544 567889999999999999999999999985
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChH
Q 007930 442 GESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVE 509 (584)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 509 (584)
.+....++..+|.++...|++++|+.+++++++. .|....++..++.++...|+++
T Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 76 ----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTCC
T ss_pred ----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcCC
Confidence 2233678999999999999999999999999998 7778889999999999998863
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.38 E-value=1.4e-11 Score=97.23 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+..+++++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------- 72 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 72 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 677889999999999999999999999986 2334689999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRAR 551 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (584)
+|....++..+|.++...|++++|+.+|++++.+....... ....+...+..+........
T Consensus 73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~---~~~~~~~~l~~~~~~~~~~~ 133 (137)
T 3q49_B 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN---FGDDIPSALRIAKKKRWNSI 133 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---CTTHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999984331111 14455556666655544433
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.38 E-value=2.9e-11 Score=93.60 Aligned_cols=117 Identities=22% Similarity=0.317 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 567789999999999999999999999985 2223578899999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
.|....++..+|.++...|++++|..++++++.+ +|....++..++.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 6777889999999999999999999999999998 7888899999999988765
No 164
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.38 E-value=4.8e-12 Score=105.06 Aligned_cols=128 Identities=10% Similarity=0.061 Sum_probs=110.8
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Q 007930 418 LYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSN 497 (584)
Q Consensus 418 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 497 (584)
+...|++++|+..+++++.. .+....++..+|.++...|++++|+.+|++++++ .|....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence 45678999999999999985 3344688999999999999999999999999998 6777889999
Q ss_pred HHHH-HHHcCCh--HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 498 LAAT-YDALGRV--EDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 498 la~~-~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|.+ +...|++ ++|+.++++++.+ +|....++..+|.++...|++++|. ..++.++...|+...
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTCCTTSC
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhCCCCcc
Confidence 9999 8899999 9999999999998 8888999999999999999999999 889999988776543
No 165
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.37 E-value=8.5e-12 Score=97.97 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007930 361 TAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRA 440 (584)
Q Consensus 361 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 440 (584)
...+.....+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 79 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQL--- 79 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 3455678899999999999999999999999999875443 678889999999999999999999999986
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC
Q 007930 441 SGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR 507 (584)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 507 (584)
.+....++..+|.++...|++++|+.+|+++++. .|....++..++.++...|+
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 2334678999999999999999999999999998 78888899999999988774
No 166
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.36 E-value=5.2e-12 Score=104.87 Aligned_cols=122 Identities=12% Similarity=0.146 Sum_probs=105.0
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 007930 377 YEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQM 456 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (584)
+...|++++|+..+++++...+.. ..++..+|.++...|++++|+.+|++++.+. +....++..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l 84 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAAL 84 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHH
Confidence 346788999999999999886554 5788899999999999999999999999863 2235788999
Q ss_pred HHH-HHhhCCH--HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 457 GLA-CLQLYRI--NEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 457 ~~~-~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
|.+ +...|++ ++|+.+++++++. +|....++..+|.++...|++++|+.+|++++.+
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999 8899999 9999999999998 8888899999999999999999999999999997
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.35 E-value=2.2e-10 Score=102.96 Aligned_cols=257 Identities=10% Similarity=-0.048 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhhcCC
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC-RFDEAIFSYQKGLTVFKATRGED 319 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 319 (584)
...++..+..+....+..++|++.+.+++.+ +|....+++..+.++...| .+++++..+.+++..
T Consensus 53 y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-------- 118 (349)
T 3q7a_A 53 YKDAMDYFRAIAAKEEKSERALELTEIIVRM------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-------- 118 (349)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------
Confidence 3444555555666667778999999999886 7888889999999999999 599999999999987
Q ss_pred cccHHHHHHHHHHHHHHc-c-cHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHH--------HHHHH
Q 007930 320 HLSVASIFIRLADLYYRI-G-KLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHE--------EALKL 389 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~ 389 (584)
+|....+++..+.++... + ++++++.++.++++...+ ...+|...+.+....|.++ +++++
T Consensus 119 nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk---------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK---------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT---------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 799999999999999988 7 899999999999876433 3678899999999888887 99999
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHh
Q 007930 390 LQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGR-------YGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQ 462 (584)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (584)
++++++..+.+ ..++...+.++...++ ++++++++++++.+ .+....+|+.+..++..
T Consensus 190 ~~k~I~~dp~N-------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 190 CNEMLRVDGRN-------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHCTTC-------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHh
Confidence 99999987766 6788889999988886 78999999999985 34456788888878877
Q ss_pred hCCHHH------------HHH-HHHHHHHHHHHHhCC-----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 463 LYRINE------------ATE-LFEEARGVLEQECGS-----CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 463 ~g~~~~------------A~~-~~~~a~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
.|+... .+. .+....+.+....+. ..+....++..|+.+|...|+.++|.++++...+-
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~--- 331 (349)
T 3q7a_A 255 FSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE--- 331 (349)
T ss_dssp TTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred cCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Confidence 766410 000 011111221111111 12456779999999999999999999888887643
Q ss_pred HhCCCChhHHHHHHHHHH
Q 007930 525 KLGTANPDIDDEKERLAE 542 (584)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~ 542 (584)
.+|-....+...+.
T Consensus 332 ----~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 332 ----YDQMRAGYWEFRRR 345 (349)
T ss_dssp ----TCGGGHHHHHHHHH
T ss_pred ----hChHHHHHHHHHHH
Confidence 37776665554443
No 168
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.35 E-value=1e-11 Score=115.50 Aligned_cols=133 Identities=11% Similarity=0.117 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC--------CCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG--------ESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
+..+..+|..+...|++++|+..|++++++..... ....+....++.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999654420 0013446789999999999999999999999999998
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHH
Q 007930 480 LEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGK 556 (584)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (584)
+|....+++.+|.+|..+|++++|+.+|++++++ +|+...++..++.++..+++.+++...
T Consensus 303 --------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 --------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999998 888899999999999999999988743
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.34 E-value=3.3e-11 Score=98.19 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC-----C------cccHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 007930 365 EIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG-----Y------HSTIAGIEAQMGVMLYVVGRYGEARSSFES 433 (584)
Q Consensus 365 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (584)
..+..+...|..+...|++++|+..|.+++.+.+.... . .+....++.++|.++..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45788999999999999999999999999998554211 0 334467899999999999999999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHcCCh
Q 007930 434 AVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTL-GVYSNLAATYDALGRV 508 (584)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~ 508 (584)
++.+ .|....+++.+|.++...|++++|+..|++++.+ +|... .+...++.+....++.
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHH
Confidence 9996 3445789999999999999999999999999999 78776 5666777766554433
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.34 E-value=4.9e-12 Score=121.78 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=131.6
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCC-------CCHHHH
Q 007930 170 SMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHS-------ASLEEA 242 (584)
Q Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~a 242 (584)
..+++++|+..|+.++.. .|..+..+..+|.+++..|++++|+..|++++++.+..... .....+
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 567888899888888877 67889999999999999999999999999999988765310 012235
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 243 ADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
.++.++|.++..+|++++|+..|++++.+ .+....+++++|.+|..+|++++|+..|++++++ .|.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~ 383 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGL------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQ 383 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC
Confidence 77999999999999999999999999886 5667889999999999999999999999999998 688
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHH
Q 007930 323 VASIFIRLADLYYRIGKLRESKSY 346 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~ 346 (584)
...++..++.++...++++++...
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999887653
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.33 E-value=1e-11 Score=95.00 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
.++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++++ +|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 3568899999999999999999999996 3445789999999999999999999999999999 88
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+...++..+|.++...|++++|+..|++++++
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999987
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.33 E-value=2.2e-11 Score=96.10 Aligned_cols=103 Identities=15% Similarity=0.015 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
..+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------ 72 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------ 72 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 34678999999999999999999999999999 7888899999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 528 TANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 528 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+|....++..+|.++..+|++++|. ..++.++...|+
T Consensus 73 --~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 --DGQSVKAHFFLGQCQLEMESYDEAI-ANLQRAYSLAKE 109 (137)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred --CchhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHChh
Confidence 8889999999999999999999999 899998887776
No 173
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.33 E-value=5e-11 Score=91.15 Aligned_cols=113 Identities=20% Similarity=0.111 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+..+|.++...|++++|+..|++++.. .+....++..+|.++...|++++|+.+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 466788999999999999999999999985 2234678999999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELL 544 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (584)
.|....++..+|.++...|++++|..++++++++ +|....++..++.+.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 7788899999999999999999999999999987 788888888887765
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.30 E-value=6.7e-13 Score=128.23 Aligned_cols=165 Identities=16% Similarity=0.075 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE 443 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 443 (584)
+..+..+..+|.++...|++++|+++|++++++.+.. ..++.++|.++..+|++++|+.++++++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------ 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL------ 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 3445677788899999999999999999999986655 778899999999999999999999999985
Q ss_pred CCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH--HHHcCChHHHHHHHH-----
Q 007930 444 SKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAAT--YDALGRVEDAIEILE----- 516 (584)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~----- 516 (584)
.+....++.++|.++..+|++++|+.+|++++++ +|+...++..++.+ +...|++++|+..++
T Consensus 70 --~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 70 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 3445789999999999999999999999999998 67666788888888 889999999999999
Q ss_pred ------HHHHHHHHHhCCCChh---HHHHHHHHHHHHHHhchHH
Q 007930 517 ------YILKVREEKLGTANPD---IDDEKERLAELLKETGRAR 551 (584)
Q Consensus 517 ------~a~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~ 551 (584)
+++.+.....++.++. .......+...+...+...
T Consensus 140 ~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~ 183 (477)
T 1wao_1 140 VDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLH 183 (477)
T ss_dssp TTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCC
T ss_pred HhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCC
Confidence 6666655555555554 2334444555555444443
No 175
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.30 E-value=1.2e-10 Score=90.02 Aligned_cols=118 Identities=21% Similarity=0.246 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
...++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 46788999999999999999999999999875443 567789999999999999999999999985
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG 506 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 506 (584)
.+....++..+|.++...|++++|+.++++++.. .|....++..++.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 2223578899999999999999999999999998 7888889999999987765
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.29 E-value=7.2e-11 Score=92.26 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++...... ...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~ 74 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RED 74 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-chh
Confidence 567789999999999999999999999986 22346789999999999999999999999999984321 111
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchH
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (584)
.+....++..+|.++...|++++|..+|++++.+ .| .......++.+....++.
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHHHHh
Confidence 1122789999999999999999999999999997 55 367777788777766553
No 177
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=2.7e-10 Score=100.20 Aligned_cols=259 Identities=8% Similarity=-0.025 Sum_probs=170.9
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Q 007930 250 LVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIR 329 (584)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 329 (584)
.-.+..|+|..++.-..+. .+..+. .....+.++|..+|++.... .+.|. ..+...
T Consensus 21 kn~fy~G~yq~~i~e~~~~------~~~~~~--~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~ 76 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF------SKVTDN--TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL 76 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS------SCCCCH--HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhc------CccchH--HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence 3456679998888743321 112222 35566778888889887421 11232 223334
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHH
Q 007930 330 LADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAG 409 (584)
Q Consensus 330 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 409 (584)
++..+. ++ |+..+++.+... ... ...+..+|.++...|++++|+.++.+.+...+ ......
T Consensus 77 la~~~~--~~---a~~~l~~l~~~~------~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~le 137 (310)
T 3mv2_B 77 YVQFLD--TK---NIEELENLLKDK------QNS---PYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTE 137 (310)
T ss_dssp HHHHHT--TT---CCHHHHHTTTTS------CCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHH
T ss_pred HHHHhc--cc---HHHHHHHHHhcC------CCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHH
Confidence 444332 22 666666655331 111 23456899999999999999999998854322 123466
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCch----HHHHHHHH--HHHHHhhC--CHHHHHHHHHHHHHHHH
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAF----FGIVLNQM--GLACLQLY--RINEATELFEEARGVLE 481 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l--~~~~~~~g--~~~~A~~~~~~a~~~~~ 481 (584)
++..++.++..+|+.+.|.+.+++..+. .+. .-.++..+ +++....| ++++|...|+++...
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-- 207 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-- 207 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--
Confidence 7778999999999999999999998775 220 12333444 44466556 999999999997665
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 007930 482 QECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA--NPDIDDEKERLAELLKETGRARNRKGKSLE 559 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~ 559 (584)
.|+.......+. ++..+|++++|...++.+++.....-..+ +|+++.++.+++.+...+|+ +|. .+++
T Consensus 208 ------~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~-~l~~ 277 (310)
T 3mv2_B 208 ------FPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE-DLTN 277 (310)
T ss_dssp ------SCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH-HHHH
T ss_pred ------CCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH-HHHH
Confidence 555222222233 89999999999999997776632210100 36788999999999999997 776 8899
Q ss_pred HHHhhhhhhhHH
Q 007930 560 NLLDSNAYRVKK 571 (584)
Q Consensus 560 ~~~~~~~~~~~~ 571 (584)
.+...+|+.+..
T Consensus 278 qL~~~~P~hp~i 289 (310)
T 3mv2_B 278 QLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTCCCHHH
T ss_pred HHHHhCCCChHH
Confidence 999888877654
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.29 E-value=2.3e-10 Score=89.04 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 410 IEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHL 489 (584)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 489 (584)
.++.+|.++...|++++|+..|++++.... .++....+++.+|.++...|++++|+.+|++++.. .++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 356889999999999999999999988521 23334578999999999999999999999999998 23333
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 007930 490 DTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAEL 543 (584)
Q Consensus 490 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~ 543 (584)
....+++.+|.++..+|++++|+.+|++++.. +|+...+......+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~a~~~l 119 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ--------YPGSDAARVAQERL 119 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCChHHHHHHHHH
Confidence 33889999999999999999999999999997 55555444444333
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.9e-11 Score=93.76 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=103.6
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
.....+..+|..+...|++++|+.+|++++... +.++....++..+|.++...|++++|+.++++++..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------ 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------
Confidence 446778899999999999999999999998741 111123788999999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 007930 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE 546 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (584)
+|....++..+|.++...|++++|+.+|++++.+ +|....++..++.+...
T Consensus 95 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 --DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNISGP 145 (148)
T ss_dssp --TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHCS
T ss_pred --CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHhh
Confidence 7778899999999999999999999999999998 78877888777776543
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.27 E-value=2e-12 Score=124.90 Aligned_cols=126 Identities=19% Similarity=0.113 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
..+..+|.++...|++++|+.+|++++++ .+....++.++|.++..+|++++|+.++++++++ +
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 70 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D 70 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence 34456788899999999999999999996 3344789999999999999999999999999998 8
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--HHHhchHHHHHHHHHH
Q 007930 489 LDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAEL--LKETGRARNRKGKSLE 559 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~l~ 559 (584)
|....++.++|.+|..+|++++|+.+|++++++ +|+...++..++.+ +..+|++++|. ..++
T Consensus 71 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~-~~~~ 134 (477)
T 1wao_1 71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDE 134 (477)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 888999999999999999999999999999998 78888888889888 88999999999 6665
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.26 E-value=8.1e-11 Score=91.72 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 007930 452 VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
.++.+|.++...|++++|+..|+++++. .++++....+++.+|.++...|++++|+.+|++++.. +|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--------~p 70 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--------YP 70 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------CC
Confidence 4678999999999999999999999998 3444444589999999999999999999999999997 55
Q ss_pred hH---HHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhHHH
Q 007930 532 DI---DDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVKKE 572 (584)
Q Consensus 532 ~~---~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~~ 572 (584)
+. ..+++.+|.++..+|++++|. ..++.++...|+.....
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQ-QTLQQVATQYPGSDAAR 113 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTSHHHH
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCCCChHHH
Confidence 55 899999999999999999999 89999998887765543
No 182
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.26 E-value=5.8e-10 Score=98.09 Aligned_cols=255 Identities=13% Similarity=-0.002 Sum_probs=165.1
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 007930 209 AHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSI 288 (584)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 288 (584)
-.+..|+|..++.-..+ ... .... .....+.+.|..+|++.... .+.+. ..+...+
T Consensus 22 n~fy~G~yq~~i~e~~~-------~~~-~~~~--~~~~~~~Rs~iAlg~~~~~~-------------~~~~~-~~a~~~l 77 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEK-------FSK-VTDN--TLLFYKAKTLLALGQYQSQD-------------PTSKL-GKVLDLY 77 (310)
T ss_dssp HHHTTTCHHHHTHHHHT-------SSC-CCCH--HHHHHHHHHHHHTTCCCCCC-------------SSSTT-HHHHHHH
T ss_pred HHHHhhHHHHHHHHHHh-------cCc-cchH--HHHHHHHHHHHHcCCCccCC-------------CCCHH-HHHHHHH
Confidence 45678999888873221 111 1122 23556677788888876321 12222 2233333
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 007930 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIAN 368 (584)
Q Consensus 289 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 368 (584)
+..+. ++ |+..+++.++. .+.....+..+|.++...|++++|+.++.+++...+ ......
T Consensus 78 a~~~~--~~---a~~~l~~l~~~--------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-------~~~~le 137 (310)
T 3mv2_B 78 VQFLD--TK---NIEELENLLKD--------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-------AEGTTE 137 (310)
T ss_dssp HHHHT--TT---CCHHHHHTTTT--------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-------STTHHH
T ss_pred HHHhc--cc---HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-------CcCcHH
Confidence 43332 22 56666655432 122244557999999999999999999999865421 124578
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHcCCCCC
Q 007930 369 GLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG--RYGEARSSFESAVVKLRASGESKS 446 (584)
Q Consensus 369 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~ 446 (584)
++..++.++..+|+.+.|.+.+++..+..++.. .......+...-+++....| ++.+|..+|+++.+. .
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~-~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------~ 208 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV-SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------F 208 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------S
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc-ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------C
Confidence 888999999999999999999999877644100 00011223223344466666 999999999997652 3
Q ss_pred ch--HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 447 AF--FGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC--HLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 447 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+. ....+.+ ++..+|++++|...++.+++........+ .|+.+.++.+++.+...+|+ +|.++++++.+.
T Consensus 209 p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 209 PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 32 2233333 89999999999999997776632211100 36788899999999999998 888999998887
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.24 E-value=1.7e-11 Score=112.84 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC--CC-------CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGE--SK-------SAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
+..+..+|..+...|++++|+..|++++.+...... .. ......++.++|.++..+|++++|+.+|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456678999999999999999999999986321000 00 000013889999999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh-chHHHHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET-GRARNRKGKS 557 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~ 557 (584)
+ +|....+++++|.+|..+|++++|+.+|++++++ +|++..++..|+.+.... +..+++. ..
T Consensus 259 ~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~-~~ 321 (338)
T 2if4_A 259 E--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK-EM 321 (338)
T ss_dssp H--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 8 8888999999999999999999999999999998 788899999999995555 4455555 78
Q ss_pred HHHHHhhhhhhh
Q 007930 558 LENLLDSNAYRV 569 (584)
Q Consensus 558 l~~~~~~~~~~~ 569 (584)
++.++...|+..
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 888887777654
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.24 E-value=3.3e-10 Score=88.41 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCC
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESK 445 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 445 (584)
.+..+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++........ .
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-D 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-h
Confidence 46788999999999999999999999999886544 567889999999999999999999999998665322 2
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG 506 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 506 (584)
......++..+|.++...|++++|+.+|+++++. .|+ ......++.+....+
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HRT-PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHHH
Confidence 2233678999999999999999999999999998 553 567777777766544
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.23 E-value=3.1e-11 Score=92.02 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=76.7
Q ss_pred HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 007930 420 VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLA 499 (584)
Q Consensus 420 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 499 (584)
.+|++++|+.+|++++++. ...+....++..+|.++...|++++|+.+|++++++ +|+...++..+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 4689999999999999841 013567889999999999999999999999999999 888899999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHH
Q 007930 500 ATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++...|++++|+.++++++..
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999997
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.23 E-value=1.8e-10 Score=107.10 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC---------CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP---------GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVV 436 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 436 (584)
.+..+..+|..+...|++++|+..|++++++.+... ...+....++.++|.++..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 356788999999999999999999999999655421 12344578899999999999999999999999998
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 007930 437 KLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEI 514 (584)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 514 (584)
+ .+....+++.+|.++..+|++++|+..|++++++ .|....++..++.++..+++.+++...
T Consensus 302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3445789999999999999999999999999999 888889999999999999888877653
No 187
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.22 E-value=2.7e-10 Score=87.03 Aligned_cols=104 Identities=24% Similarity=0.233 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
+..+..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 567889999999999999999999999998 7778899999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 530 NPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|....++..+|.++...|++++|. ..++.++..+|+...
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEANNPQ 107 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTTCHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHcCCCCHH
Confidence 7888899999999999999999999 888999988776544
No 188
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.20 E-value=3.1e-11 Score=91.34 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
..++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 69 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------- 69 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 456788999999999999999999999998 7788899999999999999999999999999997
Q ss_pred Chh--HHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhhhhhh
Q 007930 530 NPD--IDDEKERLAELLKET-GRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 530 ~p~--~~~~~~~l~~~~~~~-g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+|. ...++..+|.++... |++++|. ..++.++...|..
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~~p~~ 110 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAE-IAEARAKLEHHHH 110 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHH-HHHHHHGGGCCCC
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHH-HHHHHHhhcccCC
Confidence 677 889999999999999 9999999 9999998877754
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=3e-10 Score=111.54 Aligned_cols=177 Identities=8% Similarity=0.020 Sum_probs=156.2
Q ss_pred Hccc-HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHhCCCCc
Q 007930 336 RIGK-LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNE----------HEEALKLLQKAMKLLEDTPGYH 404 (584)
Q Consensus 336 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~~ 404 (584)
..|+ .++|++.+.+++.+.. ....+|+..+.++...|+ ++++++++++++...++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP---------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---- 106 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANP---------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---- 106 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----
T ss_pred HcCCCCHHHHHHHHHHHHHCc---------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----
Confidence 3344 4688999999999853 347899999999999998 999999999999988777
Q ss_pred ccHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHH
Q 007930 405 STIAGIEAQMGVMLYVVG--RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLY-RINEATELFEEARGVLE 481 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~ 481 (584)
..+|...+.++...| +++++++++++++++ ++....+|...+.+....| .++++++++.++++.
T Consensus 107 ---y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 107 ---YGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp ---HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred ---HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 778999999999999 779999999999996 3445689999999999999 999999999999998
Q ss_pred HHhCCCCCchHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 482 QECGSCHLDTLGVYSNLAATYDAL--------------GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
+|....+|...+.++..+ +.+++|++++.+++.+ +|++..+|+.++.++...
T Consensus 174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence 899999999999999886 5578999999999998 899999999999999998
Q ss_pred chHHH
Q 007930 548 GRARN 552 (584)
Q Consensus 548 g~~~~ 552 (584)
+++++
T Consensus 240 ~~~~~ 244 (567)
T 1dce_A 240 EPHDV 244 (567)
T ss_dssp CCCSC
T ss_pred CCccc
Confidence 88655
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.16 E-value=1.6e-10 Score=89.84 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=82.3
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCH----------HHHHHHHHHHHHHHHHHhCCCC
Q 007930 419 YVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRI----------NEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.+.+.+++|+..+++++++ .|..+.++.++|.++...+++ ++|+..|++++++ +
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence 4567899999999999996 455678999999999998875 5999999999999 9
Q ss_pred CchHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 007930 489 LDTLGVYSNLAATYDALG-----------RVEDAIEILEYILKVREEKLGTANPDIDD 535 (584)
Q Consensus 489 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~p~~~~ 535 (584)
|+...+++++|.+|..+| ++++|+.+|++|+++ +|++..
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--------~P~~~~ 126 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTH 126 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHH
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--------CCCCHH
Confidence 999999999999999885 899999999999999 787643
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.16 E-value=4.4e-11 Score=110.13 Aligned_cols=140 Identities=17% Similarity=0.101 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC--Cc--------ccHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPG--YH--------STIAGIEAQMGVMLYVVGRYGEARSSFESAV 435 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 435 (584)
.+..+..+|..+...|++++|+.+|++++.+.+.... .. .....++.++|.++..+|++++|+.+|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567888999999999999999999999988654310 00 0001378899999999999999999999999
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHcCChHHHHHH
Q 007930 436 VKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATY-DALGRVEDAIEI 514 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~ 514 (584)
.+ .+....+++++|.++..+|++++|+..|++++++ .|....++..++.+. ...+..+++...
T Consensus 258 ~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 258 TE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp HH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 2345689999999999999999999999999998 777778889999884 456777888899
Q ss_pred HHHHHHH
Q 007930 515 LEYILKV 521 (584)
Q Consensus 515 ~~~a~~~ 521 (584)
|.+++..
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 9998876
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=1.4e-09 Score=106.85 Aligned_cols=177 Identities=10% Similarity=-0.010 Sum_probs=155.5
Q ss_pred HcCCh-hHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHHhcCCCCCC
Q 007930 294 SLCRF-DEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGK----------LRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 294 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
..|++ ++|+..+.+++.+ +|....+|+..+.++...|+ +++++.++++++....+
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK------ 105 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------ 105 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC------
Confidence 44544 5779999999998 89999999999999999998 99999999999988644
Q ss_pred hHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Q 007930 363 PEEIANGLTEISAIYEALN--EHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVG-RYGEARSSFESAVVKLR 439 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~ 439 (584)
...+|...+.++...| ++++++++++++++..+.. ..+|...+.+....| .++++++++.++++.
T Consensus 106 ---~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 106 ---SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp ---CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred ---CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 4689999999999999 7799999999999998776 678889999999999 899999999999873
Q ss_pred HcCCCCCchHHHHHHHHHHHHHhh--------------CCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 440 ASGESKSAFFGIVLNQMGLACLQL--------------YRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
.+....+|..++.++... +.+++|++++.+|+.+ +|+...+|+.++.++...
T Consensus 174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence 445568999999998875 6689999999999999 888889999999999998
Q ss_pred CChHH
Q 007930 506 GRVED 510 (584)
Q Consensus 506 g~~~~ 510 (584)
+++++
T Consensus 240 ~~~~~ 244 (567)
T 1dce_A 240 EPHDV 244 (567)
T ss_dssp CCCSC
T ss_pred CCccc
Confidence 88665
No 193
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=7.1e-10 Score=88.69 Aligned_cols=106 Identities=14% Similarity=0.017 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDT---LGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
.....+..+|..+...|++++|+.+|+++++. .|+. ..++..+|.++...|++++|+.++++++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--- 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence 45688999999999999999999999999987 6665 889999999999999999999999999998
Q ss_pred HhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 525 KLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
+|....+++.+|.++..+|++++|. ..++.++..+|+...
T Consensus 95 -----~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 95 -----DGGDVKALYRRSQALEKLGRLDQAV-LDLQRCVSLEPKNKV 134 (148)
T ss_dssp -----TSCCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCSSCHH
T ss_pred -----CccCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCcHH
Confidence 7888999999999999999999999 899999888776544
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.12 E-value=2.5e-10 Score=88.83 Aligned_cols=93 Identities=10% Similarity=0.079 Sum_probs=85.0
Q ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHHHhCCCCh
Q 007930 462 QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV----------EDAIEILEYILKVREEKLGTANP 531 (584)
Q Consensus 462 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~~~~~~~~~p 531 (584)
+.+.+++|+..+++++++ +|..+.++.++|.++...+++ ++|+..|++++++ +|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 457899999999999999 999999999999999999876 4999999999999 99
Q ss_pred hHHHHHHHHHHHHHHhc-----------hHHHHHHHHHHHHHhhhhhhhHH
Q 007930 532 DIDDEKERLAELLKETG-----------RARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 532 ~~~~~~~~l~~~~~~~g-----------~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+...+++++|.+|..+| ++++|+ .+++.+++.+|+....
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~-~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT-QFFQQAVDEQPDNTHY 127 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH-HHHHHHHHhCCCCHHH
Confidence 99999999999999885 899999 9999999999876543
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.11 E-value=1.3e-09 Score=78.57 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=79.6
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
++....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++++
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3445788999999999999999999999999998 7788899999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHHHHHhc
Q 007930 526 LGTANPDIDDEKERLAELLKETG 548 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g 548 (584)
+|....++.++|.++..+|
T Consensus 73 ----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ----CTTCHHHHHHHHHHHHHHC
T ss_pred ----CCCCHHHHHHHHHHHHhcC
Confidence 8888999999999998765
No 196
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.10 E-value=1.4e-10 Score=88.38 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=80.6
Q ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 007930 462 QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLA 541 (584)
Q Consensus 462 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~ 541 (584)
.+|++++|+.+|++++++ +..+|....++..+|.+|..+|++++|+.+|++++++ +|+...++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999986 2224778899999999999999999999999999998 899999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHHhhhhhhhH
Q 007930 542 ELLKETGRARNRKGKSLENLLDSNAYRVK 570 (584)
Q Consensus 542 ~~~~~~g~~~~A~~~~l~~~~~~~~~~~~ 570 (584)
.++..+|++++|. ..++.++...|+...
T Consensus 69 ~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 69 MVLYNLGRYEQGV-ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHTCHHHHH-HHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHH-HHHHHHHHhCCCcHH
Confidence 9999999999999 888888887766544
No 197
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.08 E-value=3.3e-07 Score=88.60 Aligned_cols=214 Identities=11% Similarity=-0.004 Sum_probs=117.3
Q ss_pred hcC-ChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 007930 127 SLG-RFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRY 205 (584)
Q Consensus 127 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 205 (584)
..| +.+.|...|++++...+. |+++.+...|++++.. .| ....|..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~------------------------~~~e~~~~iferal~~--------~p-s~~LW~~ 52 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS------------------------KDYRSLESLFGRCLKK--------SY-NLDLWML 52 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT------------------------TCHHHHHHHHHHHSTT--------CC-CHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC------------------------CCHHHHHHHHHHHhcc--------CC-CHHHHHH
Confidence 356 478888888888877632 6788888888888875 33 3334444
Q ss_pred HHHHHHHhCC-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHcCCcch
Q 007930 206 LAEAHIQAMQ-FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYE----AKADYESALEHLVLASMVMIANGQENE 280 (584)
Q Consensus 206 la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~ 280 (584)
........++ .+.....|+.++....... .+ ..+|......+. ..++.+.+...|++++.. + ...
T Consensus 53 Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~--~s---~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~----P-~~~ 122 (493)
T 2uy1_A 53 YIEYVRKVSQKKFKLYEVYEFTLGQFENYW--DS---YGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT----P-MGS 122 (493)
T ss_dssp HHHHHHHHC----CTHHHHHHHHHHSTTCT--TC---HHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS----C-CTT
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHcCCCc--cc---HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC----h-hhh
Confidence 4444444442 3455667777776532111 11 234544444432 356788888888888752 1 111
Q ss_pred HHHHHHHHHHHH-------------HHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc--c-----cH
Q 007930 281 VAAIDVSIGNIY-------------MSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI--G-----KL 340 (584)
Q Consensus 281 ~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g-----~~ 340 (584)
....+......- ...+.+..|...++.+...... .....+......-... | ..
T Consensus 123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~-------~s~~~W~~y~~~E~~~~~~~~~~~~~ 195 (493)
T 2uy1_A 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG-------WSVKNAARLIDLEMENGMKLGGRPHE 195 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CSHHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhcCCccCcchhhH
Confidence 122221111111 1123344445445544443221 0112333333322211 0 13
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 341 RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 341 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
+.....|++++..... ....|...+..+...|+.++|...|++++.. |..
T Consensus 196 ~Rv~~~ye~al~~~p~---------~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~ 245 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYY---------AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG 245 (493)
T ss_dssp HHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS
T ss_pred HHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc
Confidence 4567789998887532 2678888999999999999999999999988 543
No 198
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.06 E-value=3.2e-10 Score=85.65 Aligned_cols=97 Identities=22% Similarity=0.139 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.+++++++. .
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~ 70 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------I 70 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------S
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence 35568899999999999999999999986 2234578999999999999999999999999998 6
Q ss_pred Cc--hHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 007930 489 LD--TLGVYSNLAATYDAL-GRVEDAIEILEYILKV 521 (584)
Q Consensus 489 ~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 521 (584)
|. ...++..+|.++... |++++|+.++++++..
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 77 789999999999999 9999999999999876
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=7.9e-10 Score=83.33 Aligned_cols=89 Identities=17% Similarity=0.086 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
...+..+|.++...|++++|+..|++++++ .|....++.++|.++..+|++++|+..+++++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 567899999999999999999999999999 8888899999999999999999999999999997
Q ss_pred ChhH------HHHHHHHHHHHHHhchHHHHH
Q 007930 530 NPDI------DDEKERLAELLKETGRARNRK 554 (584)
Q Consensus 530 ~p~~------~~~~~~l~~~~~~~g~~~~A~ 554 (584)
+|+. ..++..+|.++..+|++++|.
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 6776 889999999999999888876
No 200
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=2.7e-06 Score=82.20 Aligned_cols=340 Identities=9% Similarity=0.009 Sum_probs=181.3
Q ss_pred cCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHH
Q 007930 84 SGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQ 163 (584)
Q Consensus 84 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 163 (584)
.|++...|...|++++..++. |+++.+...|++++... + +. ..|..
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~------------------------~~~e~~~~iferal~~~-----p-s~----~LW~~ 52 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS------------------------KDYRSLESLFGRCLKKS-----Y-NL----DLWML 52 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT------------------------TCHHHHHHHHHHHSTTC-----C-CH----HHHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC------------------------CCHHHHHHHHHHHhccC-----C-CH----HHHHH
Confidence 453367788888888877542 77889999999988642 1 11 12333
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHhCCCCC
Q 007930 164 LGDTCSSMG-LLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHI----QAMQFDEAENLCKKILEIHREHGHSAS 238 (584)
Q Consensus 164 l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (584)
........+ ..+.....|+.++.. .|. ++....+|......+. ..++.+.+..+|++++.. |.. .
T Consensus 53 Y~~f~~~~~~~~~~i~~~fe~al~~----vg~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~----~ 122 (493)
T 2uy1_A 53 YIEYVRKVSQKKFKLYEVYEFTLGQ----FEN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMG----S 122 (493)
T ss_dssp HHHHHHHHC----CTHHHHHHHHHH----STT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCT----T
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHH----cCC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhh----h
Confidence 333333333 234455666766664 232 2333455555554432 356788899999999873 211 1
Q ss_pred HHHHHHHHHHHH-------------HHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCC--------
Q 007930 239 LEEAADRRLMAL-------------VYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCR-------- 297 (584)
Q Consensus 239 ~~~a~~~~~l~~-------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------- 297 (584)
. ...|..... +-...+.+..|...+..+....... ....+..... +..++
T Consensus 123 ~--~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~-----s~~~W~~y~~--~E~~~~~~~~~~~ 193 (493)
T 2uy1_A 123 L--SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW-----SVKNAARLID--LEMENGMKLGGRP 193 (493)
T ss_dssp H--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----SHHHHHHHHH--HHHTCTTCCCHHH
T ss_pred H--HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-----cHHHHHHHHH--HHhcCCccCcchh
Confidence 1 111111111 1112234445555555544332210 1122322222 22232
Q ss_pred -hhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 007930 298 -FDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAI 376 (584)
Q Consensus 298 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 376 (584)
.......|++++.. .|.....+...+..+...|+.++|...|++++.. +.. . ..+...+..
T Consensus 194 ~~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~----~-----~l~~~y~~~ 255 (493)
T 2uy1_A 194 HESRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG----M-----FLSLYYGLV 255 (493)
T ss_dssp HHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS----S-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc----H-----HHHHHHHhh
Confidence 23456788888776 4666889999999999999999999999999998 442 1 112211211
Q ss_pred HHHhcCHHHHHHHHHHHHHH---HH---hCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHH
Q 007930 377 YEALNEHEEALKLLQKAMKL---LE---DTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFG 450 (584)
Q Consensus 377 ~~~~g~~~~A~~~~~~a~~~---~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 450 (584)
. +.++. ++...+. .. ...........++...+....+.++.+.|...|+++ .. . ....
T Consensus 256 ~----e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~----~~~~ 319 (493)
T 2uy1_A 256 M----DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----E----GVGP 319 (493)
T ss_dssp T----TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----S----CCCH
T ss_pred c----chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----C----CCCh
Confidence 0 00111 1111111 00 000111112345566666766777788888888877 21 1 1113
Q ss_pred HHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 451 IVLNQMGLACLQLY-RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 451 ~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.++...+.+....+ +.+.|...|+.+++. .|+....+...+......|+.+.|...|+++
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~--------~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLK--------HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555565555555 588888888888876 3444445555666667778888887777765
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.98 E-value=5.7e-09 Score=79.03 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Q 007930 426 EARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDAL 505 (584)
Q Consensus 426 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 505 (584)
+|+..|++++.. .+....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 577788888773 3345689999999999999999999999999998 888889999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchH
Q 007930 506 GRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 506 g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (584)
|++++|+.+|++++++.... ........+...+..+|+.
T Consensus 67 g~~~~A~~~~~~al~~~~~~------~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQSR------GDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccc------ccHHHHHHHHHHHHHhccc
Confidence 99999999999999984321 1234444555555554443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.4e-09 Score=82.00 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC
Q 007930 408 AGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSC 487 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 487 (584)
+..+..+|.++...|++++|+..|++++.+ .+....++.++|.++...|++++|+..+++++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 467789999999999999999999999986 2334688999999999999999999999999998
Q ss_pred CCch------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 007930 488 HLDT------LGVYSNLAATYDALGRVEDAIEILEY 517 (584)
Q Consensus 488 ~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 517 (584)
.|.. ..++..+|.++...|++++|+..+++
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 6666 78999999999999998887765543
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.88 E-value=3.4e-08 Score=70.97 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
....++..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------ 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34667889999999999999999999999986 2234678999999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHHcC
Q 007930 486 SCHLDTLGVYSNLAATYDALG 506 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g 506 (584)
+|....++..+|.++...|
T Consensus 73 --~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 --DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --CTTCHHHHHHHHHHHHHHC
T ss_pred --CCCCHHHHHHHHHHHHhcC
Confidence 7888899999999998765
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.87 E-value=1.9e-08 Score=76.07 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 007930 468 EATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKET 547 (584)
Q Consensus 468 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (584)
+|+..|+++++. +|....++..+|.++...|++++|+.+|++++.+ +|....++..+|.++..+
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 578888888887 7888899999999999999999999999999998 888899999999999999
Q ss_pred chHHHHHHHHHHHHHhhhhhhh
Q 007930 548 GRARNRKGKSLENLLDSNAYRV 569 (584)
Q Consensus 548 g~~~~A~~~~l~~~~~~~~~~~ 569 (584)
|++++|. ..++.++...|...
T Consensus 67 g~~~~A~-~~~~~al~~~~~~~ 87 (115)
T 2kat_A 67 GDRAGAR-QAWESGLAAAQSRG 87 (115)
T ss_dssp TCHHHHH-HHHHHHHHHHHHHT
T ss_pred CCHHHHH-HHHHHHHHhccccc
Confidence 9999999 88888887766543
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.86 E-value=2.4e-08 Score=73.13 Aligned_cols=88 Identities=22% Similarity=0.257 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
....+++.+|.++...|++++|+.+|++++++ +|....++..+|.+|...|++++|+..|++++++....
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~-- 74 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE-- 74 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC--
Confidence 34678999999999999999999999999999 78888899999999999999999999999999984331
Q ss_pred CCChhHHHHHHHHHHHHHHhch
Q 007930 528 TANPDIDDEKERLAELLKETGR 549 (584)
Q Consensus 528 ~~~p~~~~~~~~l~~~~~~~g~ 549 (584)
........+..++...+.
T Consensus 75 ----~~~~~~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 75 ----GTQKDLSELQDAKLKAEG 92 (100)
T ss_dssp ----SCHHHHHHHHHHHHHHHT
T ss_pred ----CchhHHHHHHHHHHHccc
Confidence 123344455555544443
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.83 E-value=4.1e-08 Score=76.70 Aligned_cols=111 Identities=13% Similarity=0.017 Sum_probs=94.4
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHH
Q 007930 380 LNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLA 459 (584)
Q Consensus 380 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (584)
.+++++|+.+|+++.+.. +.. .. +|.+|...+..++|+.+|+++.+. ....+++++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g-----~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~ 66 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-----EMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC-----CHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 357899999999998652 221 22 899999999999999999999874 135789999999
Q ss_pred HHh----hCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 007930 460 CLQ----LYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA----LGRVEDAIEILEYILKV 521 (584)
Q Consensus 460 ~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 521 (584)
|.. .+++++|+.+|+++.+. ....++++||.+|.. .+++++|+.+|+++.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 998 89999999999999875 346799999999999 89999999999999985
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.80 E-value=2.7e-08 Score=72.89 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=73.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 007930 454 NQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLG-VYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPD 532 (584)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~ 532 (584)
...|.++...|++++|+..|+++++. +|.... ++..+|.++...|++++|+.+|++++++ +|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence 46788999999999999999999998 888888 9999999999999999999999999998 777
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 533 IDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
...++.+ +.+.++. ..++.++..+|+
T Consensus 68 ~~~~~~~--------~~~~~a~-~~~~~~~~~~p~ 93 (99)
T 2kc7_A 68 SPALQAR--------KMVMDIL-NFYNKDMYNQLE 93 (99)
T ss_dssp STHHHHH--------HHHHHHH-HHHCCTTHHHHC
T ss_pred cHHHHHH--------HHHHHHH-HHHHHHhccCcc
Confidence 7766633 5566666 555555555554
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.77 E-value=2.7e-08 Score=72.81 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=65.7
Q ss_pred CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhhhh
Q 007930 488 HLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSNAY 567 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~~~ 567 (584)
+|+...+++.+|.+|...|++++|+.+|++++++ +|+...++..+|.++..+|++++|+ ..++.++...+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAI-DTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhhc
Confidence 5777889999999999999999999999999998 8999999999999999999999999 888888876665
Q ss_pred hhH
Q 007930 568 RVK 570 (584)
Q Consensus 568 ~~~ 570 (584)
...
T Consensus 74 ~~~ 76 (100)
T 3ma5_A 74 EGT 76 (100)
T ss_dssp HSC
T ss_pred CCc
Confidence 433
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.72 E-value=2.2e-07 Score=72.52 Aligned_cols=115 Identities=10% Similarity=-0.004 Sum_probs=96.3
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 007930 421 VGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAA 500 (584)
Q Consensus 421 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 500 (584)
.+++++|+.+|+++.+. .++ .+. +|.+|...+..++|+.+|+++.+. ..+.++++||.
T Consensus 8 ~~d~~~A~~~~~~aa~~-------g~~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~ 65 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-------NEM---FGC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCT---THH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-------CCH---hhh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence 35789999999999874 122 223 999999999999999999999885 44689999999
Q ss_pred HHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhhhhhh
Q 007930 501 TYDA----LGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKE----TGRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 501 ~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~l~~~~~~~~~~ 568 (584)
+|.. .+++++|+.+|+++.+. ....+.++||.+|.. .+++++|. ..++.+.+.....
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~-~~~~~Aa~~g~~~ 130 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAV-KTFEKACRLGSED 130 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHH-HHHHHHHHTTCHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHH-HHHHHHHHCCCHH
Confidence 9999 89999999999999874 346889999999999 89999999 8888888765543
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.57 E-value=1.6e-07 Score=68.64 Aligned_cols=86 Identities=15% Similarity=0.046 Sum_probs=70.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGI-VLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLD 490 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 490 (584)
...|.++...|++++|+..|+++++. .+.... ++..+|.++...|++++|+.+|++++++ +|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence 46799999999999999999999985 233456 8999999999999999999999999998 676
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 491 TLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 491 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
...++.. +.+.+++..|+++...
T Consensus 68 ~~~~~~~--------~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 68 SPALQAR--------KMVMDILNFYNKDMYN 90 (99)
T ss_dssp STHHHHH--------HHHHHHHHHHCCTTHH
T ss_pred cHHHHHH--------HHHHHHHHHHHHHhcc
Confidence 6665533 5566777777777665
No 211
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.50 E-value=5.3e-05 Score=69.32 Aligned_cols=214 Identities=14% Similarity=0.078 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHhcCCCCCC
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR-IGKLRESKSYCENALRVCAKPAPATA 362 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 362 (584)
+...+|.+|...|++++-.+++......+.... ....+.....+-..+.. -+..+.-++.+.++++..... ..
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~r 94 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS---KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---KR 94 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---HH
Confidence 456788888888888887777766555433321 22333444444444433 244566677777888776541 11
Q ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 363 PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 363 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
.......-..+|.+|...|+|.+|.+.+.+..+.+... ++...+..++.....+|...+++.++..++.++......+.
T Consensus 95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence 11112244589999999999999999999999888775 55667788888899999999999999999999998876653
Q ss_pred CCCCchHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCCh
Q 007930 443 ESKSAFFGIVLNQMGLACL-QLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRV 508 (584)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 508 (584)
.++...+.....-|..+. ..++|.+|..+|-++.+-+... ..+....+...++.+-...++.
T Consensus 174 -~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 174 -CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCG
T ss_pred -CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCH
Confidence 234456677777789999 8999999999999987665322 2333344555566666666664
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.50 E-value=2.6e-06 Score=62.40 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTA 529 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 529 (584)
+.-.+.+|..++..|+|..|+.+|++|++....... .......++..||.++.++|++++|+.++++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-------- 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 345678999999999999999999999987643211 13467789999999999999999999999999998
Q ss_pred ChhHHHHHHHHHH
Q 007930 530 NPDIDDEKERLAE 542 (584)
Q Consensus 530 ~p~~~~~~~~l~~ 542 (584)
.|+...+..+++.
T Consensus 76 ~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 76 DPEHQRANGNLKY 88 (104)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCHHHHhhHHH
Confidence 8888888888773
No 213
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.44 E-value=8.4e-05 Score=68.02 Aligned_cols=211 Identities=14% Similarity=0.074 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHhhcCCccc
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMS-LCRFDEAIFSYQKGLTVFKATRGEDHLS 322 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 322 (584)
+...+|.+|...|++++-.+++......+... .....+.+...+-..+.. -+..+.-++.+.++++-++.. ...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r~ 95 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSI-SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KRT 95 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS-CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HHH
Confidence 47889999999999999988887543322211 122333444444444443 344555666777777665432 233
Q ss_pred HHH--HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Q 007930 323 VAS--IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 323 ~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 400 (584)
... .-..+|.+|...|+|.+|...+.+.++..++. ++.....+++.....+|...+++.++...+.++.......
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 333 44589999999999999999999999988773 4467788899999999999999999999999999988776
Q ss_pred CCCcccHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCC
Q 007930 401 PGYHSTIAGIEAQMGVMLY-VVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYR 465 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (584)
+.++...+.+...-|.++. ..++|.+|..+|-++..-+...+ .+....++..++.+-...++
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCC
Confidence 5556666777778888999 89999999999999876655432 22223444445555555554
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.41 E-value=2.2e-05 Score=70.49 Aligned_cols=132 Identities=11% Similarity=0.089 Sum_probs=93.5
Q ss_pred HHHHHHHHh---cCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHcCCC
Q 007930 372 EISAIYEAL---NEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRY----GEARSSFESAVVKLRASGES 444 (584)
Q Consensus 372 ~la~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~a~~~~~~~~~~ 444 (584)
..|..+... .+..+|+.+|++++++.|+. +.++..++.+|.....+ ......+..++.......
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~-------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~-- 271 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEF-------TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP-- 271 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc--
Confidence 344444443 34689999999999998776 55555566665422111 122233334443222211
Q ss_pred CCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 445 KSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
..+..+.++..++..+...|++++|+..+++|+.+ ++. ..++..+|.++...|++++|++.|++|+.+
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 12334678888888888899999999999999999 665 467889999999999999999999999999
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.41 E-value=7.7e-06 Score=70.07 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHHhCCCChhH-HHH
Q 007930 465 RINEATELFEEARGVLEQECGSCHLD--TLGVYSNLAATYDAL-----GRVEDAIEILEYILKVREEKLGTANPDI-DDE 536 (584)
Q Consensus 465 ~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~p~~-~~~ 536 (584)
...+|...+++++++ +|. ...++..||.+|... |+.++|..+|++++++ +|+. ..+
T Consensus 178 ~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~ 241 (301)
T 3u64_A 178 TVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDH 241 (301)
T ss_dssp HHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHH
T ss_pred hHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchH
Confidence 457899999999999 888 456999999999995 9999999999999999 8875 999
Q ss_pred HHHHHHHHHHh-chHHHHHHHHHHHHHhhhhhh
Q 007930 537 KERLAELLKET-GRARNRKGKSLENLLDSNAYR 568 (584)
Q Consensus 537 ~~~l~~~~~~~-g~~~~A~~~~l~~~~~~~~~~ 568 (584)
++..|..+... |++++|. ..++.++..+|..
T Consensus 242 ~v~YA~~l~~~~gd~~~a~-~~L~kAL~a~p~~ 273 (301)
T 3u64_A 242 HITYADALCIPLNNRAGFD-EALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHTTTTTTCHHHHH-HHHHHHHHCCGGG
T ss_pred HHHHHHHHHHhcCCHHHHH-HHHHHHHcCCCCC
Confidence 99999999885 9999999 9999999776653
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.40 E-value=7.4e-06 Score=59.98 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCH 488 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 488 (584)
.-++.+|..++..|+|..|+..|++|+........ .......++..+|.++..+|++++|+.++++++++ .
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~ 76 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D 76 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence 44568999999999999999999999997654321 23346789999999999999999999999999999 7
Q ss_pred CchHHHHHHHH
Q 007930 489 LDTLGVYSNLA 499 (584)
Q Consensus 489 ~~~~~~~~~la 499 (584)
|+...+..+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 88777777776
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.39 E-value=2.2e-06 Score=60.86 Aligned_cols=75 Identities=20% Similarity=0.123 Sum_probs=67.1
Q ss_pred CCchHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q 007930 488 HLDTLGVYSNLAATYDALGR---VEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDS 564 (584)
Q Consensus 488 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~ 564 (584)
+|+.+.++..+|.++...++ .++|..++++++++ +|++..++..+|.++...|++++|+ ..++.+++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai-~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAI-DTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence 56777899999999987766 79999999999999 9999999999999999999999999 999999988
Q ss_pred hhhhhHH
Q 007930 565 NAYRVKK 571 (584)
Q Consensus 565 ~~~~~~~ 571 (584)
+|+.+..
T Consensus 73 ~p~~~~~ 79 (93)
T 3bee_A 73 NDPNLDR 79 (93)
T ss_dssp CCTTCCH
T ss_pred CCCCccH
Confidence 8874443
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.36 E-value=5e-05 Score=73.42 Aligned_cols=168 Identities=9% Similarity=-0.038 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHH
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI---------GKLRESKSYCENALRVC 354 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~ 354 (584)
++..+-..+.+.|+.++|+++|++..+. .......+|+.+-.++... +..++|.+.|++.....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G 100 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK 100 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC
Confidence 3455667888999999999999987764 1233445666666666543 44788999988876542
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 355 AKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
-. |+ ..+|+.+...+.+.|++++|.+++++..+. |..+. ..+|..+-..|.+.|+.++|.++|++.
T Consensus 101 ~~-------Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 101 VV-------PN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPR-LRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp CC-------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC-------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc-cceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 22 468889999999999999999999887542 32222 456778889999999999999999987
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 435 VVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.+. +- .| ...++..+-..+...|+.++|.+++++..+.
T Consensus 167 ~~~----G~--~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 167 VES----EV--VP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHT----TC--CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhc----CC--CC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 652 21 12 2468889999999999999999999987664
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=7e-06 Score=63.06 Aligned_cols=79 Identities=16% Similarity=0.084 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHhCCCC-C-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLY---RINEATELFEEARGVLEQECGSCH-L-DTLGVYSNLAATYDALGRVEDAIEILEYILKVRE 523 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 523 (584)
...+.+++|.++...+ +.++++.+++..++. + | ...+++++||..+.++|+|++|..++++++++
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-- 100 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-- 100 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence 4688999999999988 677999999999887 4 5 56789999999999999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHH
Q 007930 524 EKLGTANPDIDDEKERLAEL 543 (584)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~ 543 (584)
+|++..+....-.+
T Consensus 101 ------eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 101 ------EPQNNQAKELERLI 114 (152)
T ss_dssp ------CTTCHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHH
Confidence 88777666544433
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.32 E-value=4.8e-05 Score=68.35 Aligned_cols=148 Identities=9% Similarity=-0.032 Sum_probs=103.9
Q ss_pred HHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh---C-CHHHHHHHHHHHHHHHHHHhC
Q 007930 413 QMGVMLYVVG---RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL---Y-RINEATELFEEARGVLEQECG 485 (584)
Q Consensus 413 ~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~a~~~~~~~~~ 485 (584)
..|..+...+ +..+|+.+|++++++ .|..+.++..++.++... + .......-+.+++..... .
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--~ 270 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--L 270 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--c
Confidence 4455555443 468999999999996 455667777777766532 1 112222333344432211 1
Q ss_pred CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 486 SCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
...|..+.++..++..+...|++++|+..+++++.+ +|. ..++..+|.++...|++++|. ..++.++..+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~-e~~~~AlrL~ 340 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAA-DAYLTAFNLR 340 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHS
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcC
Confidence 235677889999999999999999999999999999 564 567889999999999999999 8889999888
Q ss_pred hhhhHHHHHhHhhcCCCC
Q 007930 566 AYRVKKEVTKRRSGFGFR 583 (584)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~ 583 (584)
|.... ..-+..+.|.
T Consensus 341 P~~~t---~~~~~~l~F~ 355 (372)
T 3ly7_A 341 PGANT---LYWIENGIFQ 355 (372)
T ss_dssp CSHHH---HHHHHHSSSC
T ss_pred CCcCh---HHHHhCceee
Confidence 85532 3344455554
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.27 E-value=0.0001 Score=71.25 Aligned_cols=168 Identities=7% Similarity=-0.042 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHH
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEAL---------NEHEEALKLLQKAMKL 396 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~ 396 (584)
.+..+-..+.+.|+.++|+++|++..+..-. |+ ..+|+.+-.++... +..++|.+.|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~-------pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~ 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQ-------LS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC-------CC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------CC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh
Confidence 3455567888999999999999998875322 11 34566666665543 3467888888776542
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 397 LEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
|..+. ..+|..+...|.+.|++++|..+|++.... +- .| ...+|..+-..|...|+.++|.++|++.
T Consensus 100 -----G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~--~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 -----KVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF----GI--QP-RLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp -----TCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC--CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CC-ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 32222 356788999999999999999999987652 21 12 2467888999999999999999999988
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 477 RGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+. ...|+. .++..|-.+|.+.|+.++|.+++++..+.
T Consensus 167 ~~~------G~~Pd~-~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 167 VES------EVVPEE-PELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHT------TCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhc------CCCCCH-HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 764 224444 68999999999999999999999987664
No 222
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.26 E-value=1.9e-05 Score=60.93 Aligned_cols=113 Identities=6% Similarity=-0.068 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKG 150 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 150 (584)
...+++....++..|. |+.|+-....++.+.+.-.+.-.......++..+|..++..|+|..|...|+++++..+....
T Consensus 20 ~~~l~dqik~L~d~~L-Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGL-HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp -CCHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4457888899999999 999999999999886543322234456888999999999999999999999999998864321
Q ss_pred Cch----------------hhhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007930 151 SDR----------------ALAKFSGYMQLGDTCSSMGLLDRSVWCYESG 184 (584)
Q Consensus 151 ~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 184 (584)
... .....++.+.++.||...+++++|+..++..
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111 0112256789999999999999999987654
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.25 E-value=1.1e-05 Score=57.16 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYR---INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+..+..+|.+++..++ .++|..++++++++ +|+...++..+|..++..|++++|+.+|+++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35788899999976665 79999999999999 9999999999999999999999999999999886
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.25 E-value=0.00031 Score=60.35 Aligned_cols=83 Identities=17% Similarity=-0.005 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCch--HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHHHHHHHhCCCCCch-HHH
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAF--FGIVLNQMGLACLQL-----YRINEATELFEEARGVLEQECGSCHLDT-LGV 494 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~ 494 (584)
....|...+++++++ .+. ...++..+|.+|... |+.++|.++|++|+++ +|+. ..+
T Consensus 178 ~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~ 241 (301)
T 3u64_A 178 TVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDH 241 (301)
T ss_dssp HHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHH
T ss_pred hHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchH
Confidence 457888888999886 233 567999999999985 9999999999999999 8864 889
Q ss_pred HHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 007930 495 YSNLAATYDA-LGRVEDAIEILEYILKV 521 (584)
Q Consensus 495 ~~~la~~~~~-~g~~~~A~~~~~~a~~~ 521 (584)
++..|..+.. .|++++|..++++++..
T Consensus 242 ~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 242 HITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 9999999988 59999999999999996
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.21 E-value=3.4e-05 Score=59.56 Aligned_cols=111 Identities=14% Similarity=-0.028 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Q 007930 115 VMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGD 194 (584)
Q Consensus 115 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (584)
..+++.-...++..|.|+.|+-....++.+.....+.-.+...+.++..+|..++..++|..|...|+++++..+.+...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455667778899999999999999999876655554666677889999999999999999999999999987643211
Q ss_pred C-----------------ChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 007930 195 S-----------------DPRVAETCRYLAEAHIQAMQFDEAENLCKK 225 (584)
Q Consensus 195 ~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 225 (584)
. .+...++.+.++.||...+++++|+..++.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1 122347889999999999999999998764
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=2.9e-05 Score=59.70 Aligned_cols=89 Identities=13% Similarity=0.030 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHhCCCC-h-hHHHHHHHH
Q 007930 466 INEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALG---RVEDAIEILEYILKVREEKLGTAN-P-DIDDEKERL 540 (584)
Q Consensus 466 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~-p-~~~~~~~~l 540 (584)
...+.+.|.+.+.. .+...++.+++|.++.+.+ +.++++.++++.++. + | ...+++++|
T Consensus 14 l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~L 77 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYL 77 (152)
T ss_dssp HHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHH
Confidence 34455555555543 4456789999999999988 666899999998886 4 7 678999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 541 AELLKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 541 ~~~~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
|..+.++|++++|. .+++.+++.+|+....
T Consensus 78 Av~~~kl~~Y~~A~-~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 78 AVGNYRLKEYEKAL-KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHTSCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHHHHHccCHHHHH-HHHHHHHhcCCCCHHH
Confidence 99999999999999 9999999999976544
No 227
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.0041 Score=58.91 Aligned_cols=219 Identities=12% Similarity=0.027 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 007930 214 MQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYM 293 (584)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 293 (584)
|+++.|++.+...-+..+... +......+...+..++...|+++...+++.. +....+..............-+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~--d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~---Lskkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQAS--DLASSKEVLAKIVDLLASRNKWDDLNEQLTL---LSKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSC--STTTCHHHHHHHHHHHHHHSCHHHHHHHHHH---HHTTTTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhcc--chhhHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHH
Confidence 667777776644333333222 3334455677888889999999888776642 22222332222222222222222
Q ss_pred -HcCChhHHHHHHHHHHHHHHHhhcCC---cccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 007930 294 -SLCRFDEAIFSYQKGLTVFKATRGED---HLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANG 369 (584)
Q Consensus 294 -~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 369 (584)
.....+. ......++......... ....+.....|+.++...|++.+|...+.....-... ..+.......
T Consensus 105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---~~~~~~kve~ 179 (445)
T 4b4t_P 105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG---SMEMSEKIQF 179 (445)
T ss_dssp HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---SSCHHHHHHH
T ss_pred hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cccHHHHHHH
Confidence 1222221 11112222111111100 1125667788999999999999999999988755433 4456677889
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG 442 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 442 (584)
+.....++...+++.+|...+.++..........+......+...|.++...++|.+|-.+|..+.......+
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~ 252 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKS 252 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccC
Confidence 9999999999999999999999987666555455556677888899999999999999999999988665443
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.024 Score=53.69 Aligned_cols=219 Identities=12% Similarity=0.003 Sum_probs=139.6
Q ss_pred hccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q 007930 255 KADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLY 334 (584)
Q Consensus 255 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 334 (584)
.|+++.|++.+....+..+...+......+...+..++...|+++...+++.-.... .+.- ............-+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk----r~ql-k~ai~~~V~~~~~~ 103 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK----HGQL-KLSIQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT----TTTS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----hhhh-HHHHHHHHHHHHHH
Confidence 367888888775544444455666777788888999999999998877765432211 1111 11111111111112
Q ss_pred H-HcccHHHHHHHHHHHHHHHhcCCCCCC--hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHH
Q 007930 335 Y-RIGKLRESKSYCENALRVCAKPAPATA--PEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIE 411 (584)
Q Consensus 335 ~-~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 411 (584)
. .....+. ......+........+.- ....+.....|+.++...|++.+|...+.....-.... .+......++
T Consensus 104 l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~ 180 (445)
T 4b4t_P 104 LKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFI 180 (445)
T ss_dssp HHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHH
T ss_pred HhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 1 1222221 222233333322211211 12346677889999999999999999998876433222 3445567788
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 412 AQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
.....++...+++.+|...+.++......... .+......+...|.++...++|.+|..+|.++......
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~-~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKILKKTFKNPK-YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC-cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 88999999999999999999998654443322 23345667788899999999999999999999886543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.48 E-value=0.002 Score=47.48 Aligned_cols=97 Identities=15% Similarity=0.080 Sum_probs=69.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH---HHHHHHHHHHHHHHHhCCCCC-chHHHHHHH
Q 007930 423 RYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE---ATELFEEARGVLEQECGSCHL-DTLGVYSNL 498 (584)
Q Consensus 423 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 498 (584)
....+...|.+.... +. ....+.+++|+++....+... ++.+++..+.. ..| ..-+.++.|
T Consensus 16 ~l~~~~~~y~~e~~~----~~----~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~L 80 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA----GS----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHHH----SC----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc----CC----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHH
Confidence 344455555555442 11 235788999999998877665 66655555443 334 567899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAE 542 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~ 542 (584)
|..+.++|+|++|..+++..+++ .|++..+......
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~--------eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 99999999999999999999999 8877666544433
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.34 E-value=0.0038 Score=46.06 Aligned_cols=94 Identities=13% Similarity=-0.002 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHH
Q 007930 465 RINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANP-DIDDEKERLAEL 543 (584)
Q Consensus 465 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p-~~~~~~~~l~~~ 543 (584)
....+...|.+.... .+....+.+++|+++.+..+... .++.+.+.+.++..++| ...++++.||..
T Consensus 16 ~l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 344455556555554 34556899999999999887765 23444555555555446 788999999999
Q ss_pred HHHhchHHHHHHHHHHHHHhhhhhhhHH
Q 007930 544 LKETGRARNRKGKSLENLLDSNAYRVKK 571 (584)
Q Consensus 544 ~~~~g~~~~A~~~~l~~~~~~~~~~~~~ 571 (584)
+.++|+|++|. .+.+.+|+..|+....
T Consensus 84 ~yklg~Y~~A~-~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 84 NYRLKEYEKAL-KYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHHhhhHHHHH-HHHHHHHHhCCCCHHH
Confidence 99999999999 9999999999876543
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.22 E-value=0.0088 Score=45.18 Aligned_cols=109 Identities=12% Similarity=0.063 Sum_probs=84.2
Q ss_pred cccHHHHHHHHHHHHHHcccH------HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 007930 320 HLSVASIFIRLADLYYRIGKL------RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKA 393 (584)
Q Consensus 320 ~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 393 (584)
.|.....+..........|+. ++-++.|++++...+-.. .......+..|...|.. ...++.++|.+.|+.+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 355566666666777777888 888899999988764321 33445667778888866 5679999999999999
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 394 MKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
+.+... . +.++...|..-.++|+..+|...+.+++.+
T Consensus 87 ~~~hKk-----F--AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 87 RANCKK-----F--AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHCTT-----B--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhHH-----H--HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 997221 1 888889999999999999999999999984
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.15 E-value=0.0072 Score=45.62 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 409 GIEAQMGVMLYVVGRY------GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
..+........+.|+. ++-++.|++|+.............+...|...+.. ...++.++|.+.|+.++.+
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--- 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--- 89 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence 4444555666666777 77788899888865433333444566677777755 5669999999999999997
Q ss_pred HhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 483 ECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+...+.++...|..-.++|+...|.+.+.+++.+
T Consensus 90 -----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 90 -----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp -----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 5566899999999999999999999999999996
No 233
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.008 Score=56.72 Aligned_cols=112 Identities=20% Similarity=0.112 Sum_probs=90.8
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcC
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKP 357 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 357 (584)
......++..+|..|...|++++|.+.|.++...... .......+..+..++...+++..+..++.++......
T Consensus 127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~- 200 (429)
T 4b4t_R 127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK- 200 (429)
T ss_dssp CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-
Confidence 4455667889999999999999999999998776432 3466788888999999999999999999999888765
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007930 358 APATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLL 397 (584)
Q Consensus 358 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 397 (584)
+.++..........|.++...++|.+|..+|-.+....
T Consensus 201 --~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 201 --GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp --CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred --CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 44555555666777888889999999999998876543
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.73 E-value=0.04 Score=40.75 Aligned_cols=78 Identities=5% Similarity=-0.051 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRI---NEATELFEEARGVLEQECGSCHL-DTLGVYSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
..+.+++|+++....+. .+++.+++..+.. +| ...+.++.||..+.++|+|++|..+.+..+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---- 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---- 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----
Confidence 57888899998887654 5677777777665 45 56789999999999999999999999999998
Q ss_pred hCCCChhHHHHHHHHHHH
Q 007930 526 LGTANPDIDDEKERLAEL 543 (584)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~ 543 (584)
.|++..+......+
T Consensus 108 ----eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 108 ----ERNNKQVGALKSMV 121 (134)
T ss_dssp ----CTTCHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHH
Confidence 78877666544433
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.43 E-value=0.055 Score=40.62 Aligned_cols=75 Identities=5% Similarity=-0.058 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 007930 449 FGIVLNQMGLACLQLYRI---NEATELFEEARGVLEQECGSCHL-DTLGVYSNLAATYDALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 524 (584)
...+.+++|+++....+. .+++.+++..+.. +| ..-+.++.||..+.++|+|++|..+.+..+++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--- 106 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--- 106 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---
Confidence 357888999999887654 4677777776664 34 57789999999999999999999999999998
Q ss_pred HhCCCChhHHHHHHH
Q 007930 525 KLGTANPDIDDEKER 539 (584)
Q Consensus 525 ~~~~~~p~~~~~~~~ 539 (584)
.|++..+...
T Consensus 107 -----eP~n~QA~~L 116 (144)
T 1y8m_A 107 -----ERNNKQVGAL 116 (144)
T ss_dssp -----CCCCHHHHHH
T ss_pred -----CCCcHHHHHH
Confidence 7877665543
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.30 E-value=0.29 Score=50.92 Aligned_cols=76 Identities=16% Similarity=0.029 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHH
Q 007930 246 RLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVAS 325 (584)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 325 (584)
..+...+...|.+++|++..+.. . .........|++++|.+..+. .....
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~-----------~------~~f~~~l~~~~~~~A~~~~~~-------------~~~~~ 682 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ-----------D------QKFELALKVGQLTLARDLLTD-------------ESAEM 682 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH-----------H------HHHHHHHHHTCHHHHHHHHTT-------------CCCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc-----------c------hheehhhhcCCHHHHHHHHHh-------------hCcHh
Confidence 45566677788888887655321 1 112345678899888876432 23446
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENAL 351 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al 351 (584)
.+..+|..+...|+++.|+.+|.++-
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 78899999999999999999998763
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.23 E-value=0.18 Score=37.30 Aligned_cols=75 Identities=8% Similarity=-0.075 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh
Q 007930 408 AGIEAQMGVMLYVVGRY---GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
..+.+++|+++.+..+. .+++.+++..+.. .+.....+++.+|..+.+.|+|++|..+.+..+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~----- 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----- 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----
Confidence 46677889998887654 4677777776653 33356789999999999999999999999999998
Q ss_pred CCCCCchHHHHHH
Q 007930 485 GSCHLDTLGVYSN 497 (584)
Q Consensus 485 ~~~~~~~~~~~~~ 497 (584)
.|+...+...
T Consensus 108 ---eP~N~QA~~L 117 (134)
T 3o48_A 108 ---ERNNKQVGAL 117 (134)
T ss_dssp ---CTTCHHHHHH
T ss_pred ---CCCCHHHHHH
Confidence 7776555443
No 238
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.018 Score=54.36 Aligned_cols=109 Identities=18% Similarity=0.046 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCC
Q 007930 198 RVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
....++..+|..|...|++++|.+.|.++........ ....++..+..++...+++..+..++.++.......++
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d 203 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD 203 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC
Confidence 4556788999999999999999999999887654332 24566888889999999999999999999887777777
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV 311 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 311 (584)
...........|.++...++|.+|..+|..+...
T Consensus 204 ~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 204 WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 6666677777888899999999999999887654
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.11 E-value=0.13 Score=47.73 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=82.6
Q ss_pred HHhccHHHHHHHHHHHHHHHHHcC--CC-CCc-----------hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh
Q 007930 419 YVVGRYGEARSSFESAVVKLRASG--ES-KSA-----------FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 419 ~~~g~~~~A~~~~~~a~~~~~~~~--~~-~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
...|+.+.|...+.+++.+++.-. +. ..+ ....+...++..+...|++.+|+..+..++..
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----- 200 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE----- 200 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 345677777777777777653210 00 000 11234556778888999999999999999998
Q ss_pred CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC-CChhHHHHHH
Q 007930 485 GSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGT-ANPDIDDEKE 538 (584)
Q Consensus 485 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~p~~~~~~~ 538 (584)
+|..-..+..+..++...|+..+|+..|+++...+.+.+|- ..|.....+.
T Consensus 201 ---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 201 ---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp ---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 88888899999999999999999999999999998888773 3444444443
No 240
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.1 Score=49.19 Aligned_cols=144 Identities=13% Similarity=0.024 Sum_probs=65.0
Q ss_pred HHHhCCHHHHHHHHHHHH--HHHHH-hCCCCCHHHHHHHHHHHHHHHHhccHHHHH----------HHHHHHHHHHHHcC
Q 007930 210 HIQAMQFDEAENLCKKIL--EIHRE-HGHSASLEEAADRRLMALVYEAKADYESAL----------EHLVLASMVMIANG 276 (584)
Q Consensus 210 ~~~~g~~~~A~~~~~~al--~~~~~-~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~----------~~~~~a~~~~~~~~ 276 (584)
+...+++++|.++....+ +.... +...-+...+.+|+..+.++...|+..... ..+-.+++......
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 456778888888877655 22221 111123345677888888888777765532 22222333322344
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
+....+.+++.+-+.|...+.+++|..+..++.- .... ..+...+..++.+|.++..+++|.+|.+++..|+..+..
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~-~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Cccc-CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 5667788889999999999999999999888731 1100 012345777888999999999999999999999876643
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.17 Score=50.76 Aligned_cols=123 Identities=12% Similarity=0.010 Sum_probs=83.4
Q ss_pred hcC-HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHc----CCCC------
Q 007930 380 LNE-HEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVML---YVVGRYGEARSSFESAVVKLRAS----GESK------ 445 (584)
Q Consensus 380 ~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~a~~~~~~~----~~~~------ 445 (584)
.++ ++.|+.++++.....+.. .++...+.+. ....+--+|+..+.++++..... ....
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~--------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIH--------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCch--------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 444 577888888866554332 1222222221 12234556788887777543211 1111
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
.+.....+..-+..+...|+++-|+++.++|+.. .|....+|+.|+.+|..+|+++.|+-.+.-+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0112345666688888999999999999999999 8999999999999999999999999888766
No 242
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.25 Score=46.62 Aligned_cols=151 Identities=9% Similarity=-0.014 Sum_probs=63.9
Q ss_pred HHHHcCCChHHHHHHHHHHH--HHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-------HHHHHHHhccC
Q 007930 80 ETISSGDNPNKALDYAIRAS--KSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLE-------RSIEVVDIGKG 150 (584)
Q Consensus 80 ~~~~~g~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------~al~~~~~~~~ 150 (584)
.++..++ +++|..+....+ ..........-+.-.+.+|+..+.++...|+......... ..+...+....
T Consensus 145 ~L~d~k~-~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 145 FLWDSKE-LEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHhcccc-HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 4455666 899998887666 3333332223345567778888888877777665432211 22222222222
Q ss_pred CchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 151 SDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
..+.......+..+-..|...+.|+.|..+..++.-. .. ...+...+..++.+|.++..+++|.+|.+++..|+...
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3333444466888899999999999999988877311 00 01234557788899999999999999999999999876
Q ss_pred HHhC
Q 007930 231 REHG 234 (584)
Q Consensus 231 ~~~~ 234 (584)
+...
T Consensus 301 p~~~ 304 (523)
T 4b4t_S 301 PHNS 304 (523)
T ss_dssp SCSS
T ss_pred Ccch
Confidence 6443
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.73 E-value=0.15 Score=53.15 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=34.7
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007930 124 IYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGL 185 (584)
Q Consensus 124 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 185 (584)
.....|++++|.+..+. .+.+ ..|..+|..+...|+++.|+..|.++-
T Consensus 661 ~~l~~~~~~~A~~~~~~----------~~~~----~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD----------ESAE----MKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTT----------CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHh----------hCcH----hHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34566777777666432 1122 348899999999999999999998863
No 244
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.49 E-value=0.25 Score=50.94 Aligned_cols=105 Identities=8% Similarity=-0.124 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
....+++.+-..|.+.|+.++|...|.+..++...-. .+ ...+|+.+-..|.+.|+.++|.++|++..+.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------ 194 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA------ 194 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Confidence 4456788899999999999999999988765432211 12 2468999999999999999999999998764
Q ss_pred CCCCchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 007930 486 SCHLDTLGVYSNLAATYDALGRV-EDAIEILEYILKV 521 (584)
Q Consensus 486 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~ 521 (584)
...|+. .+|..+-.++.+.|+. ++|.+++++..+.
T Consensus 195 G~~PDv-vTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 GLTPDL-LSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp TCCCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCcH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 235554 6888888899999985 7888999888764
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.68 Score=36.59 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=67.2
Q ss_pred HHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHH
Q 007930 333 LYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEA 412 (584)
Q Consensus 333 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 412 (584)
+....|+++.|.+..++. . ....|..||......|+++-|..+|.++-.. .
T Consensus 14 LAL~lg~l~~A~e~a~~l----~----------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------------~ 64 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL----N----------DSITWERLIQEALAQGNASLAEMIYQTQHSF---------------D 64 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH----C----------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------------H
T ss_pred HHHhcCCHHHHHHHHHHh----C----------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------------H
Confidence 345678899888876543 1 1468899999999999999999999875332 1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEA 476 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 476 (584)
.+..+|...|+.++-...-+.+.. .+ . ++....+++..|++++++++|.+.
T Consensus 65 ~L~~Ly~~tg~~e~L~kla~iA~~----~g----~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKMQNIAQT----RE----D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH----TT----C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH----Cc----c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 455667777877554433333322 11 1 222334566788999888888654
No 246
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.86 E-value=0.42 Score=49.31 Aligned_cols=104 Identities=7% Similarity=-0.123 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCc
Q 007930 241 EAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDH 320 (584)
Q Consensus 241 ~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 320 (584)
.-..++.+-..|++.|+.++|...|.+....... ...-...+|+.+...|.+.|+.++|.++|++..+. ..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k--G~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-------G~ 196 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK--RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-------GL 196 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH--HTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc--CCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CC
Confidence 3445555555666666666666555543221110 12234455555666666666666666655554332 12
Q ss_pred ccHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHH
Q 007930 321 LSVASIFIRLADLYYRIGKL-RESKSYCENALRV 353 (584)
Q Consensus 321 ~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 353 (584)
.....+|+.+-.++.+.|+. ++|.+++++..+.
T Consensus 197 ~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 22334455555555555553 4555555555543
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.71 E-value=0.98 Score=33.99 Aligned_cols=74 Identities=8% Similarity=-0.063 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHh
Q 007930 408 AGIEAQMGVMLYVVGRY---GEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQEC 484 (584)
Q Consensus 408 ~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 484 (584)
..+.+++|+++.+..+. .+++.+++..+.. .+...-.+++.+|..+.+.|+|++|..+.+..+++
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~----- 106 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----- 106 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----
Confidence 56778899999888754 4567777766652 33346789999999999999999999999999998
Q ss_pred CCCCCchHHHHH
Q 007930 485 GSCHLDTLGVYS 496 (584)
Q Consensus 485 ~~~~~~~~~~~~ 496 (584)
.|+...+..
T Consensus 107 ---eP~n~QA~~ 115 (144)
T 1y8m_A 107 ---ERNNKQVGA 115 (144)
T ss_dssp ---CCCCHHHHH
T ss_pred ---CCCcHHHHH
Confidence 676654443
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.59 Score=36.98 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=67.5
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Q 007930 291 IYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGL 370 (584)
Q Consensus 291 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 370 (584)
+....|+++.|.+..+.. .....|..+|......|+++-|..+|.++-..
T Consensus 14 LAL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------- 63 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------- 63 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------------
T ss_pred HHHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------------
Confidence 445789999988876542 23567899999999999999999999886433
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 007930 371 TEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESA 434 (584)
Q Consensus 371 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 434 (584)
..+..+|...|+.+.-....+.+ ... ++ +.....+++..|+++++++.|.+.
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA----~~~-g~-------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIA----QTR-ED-------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH----HHT-TC-------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----HHC-cc-------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 23445566677765544333322 222 11 112345667889998888888664
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.43 E-value=1.3 Score=34.21 Aligned_cols=99 Identities=20% Similarity=0.056 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH----------HHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTV----------FKA 314 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~ 314 (584)
-..++.++...|+|..++-++.. ...+...+.-+.||....+|..|+..++..++- .-+
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-----------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-----------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-----------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 45677888889999999877752 233455566788999999999999999998732 111
Q ss_pred hhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 007930 315 TRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVC 354 (584)
Q Consensus 315 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 354 (584)
..-.+..+.-..+..+|.++...|+.++|+.++.......
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 1111234455678889999999999999999999887653
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.38 E-value=0.89 Score=42.08 Aligned_cols=106 Identities=13% Similarity=0.001 Sum_probs=80.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCch---h----------hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDR---A----------LAKFSGYMQLGDTCSSMGLLDRSVWCYESGLE 186 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 186 (584)
..|......|+.+.|...+.+|+.+.....-.+. . .....+...++..+...|++.+++..+..++.
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344445568999999999999987642211111 0 11123456677888899999999999999988
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 007930 187 IQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIHREH 233 (584)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (584)
. +|..-.++..+..++...|+..+|+..|++..+.....
T Consensus 200 ~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~e 238 (388)
T 2ff4_A 200 E--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD 238 (388)
T ss_dssp H--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 8 78888899999999999999999999999998876543
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.30 E-value=2.7 Score=37.31 Aligned_cols=233 Identities=13% Similarity=0.062 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccH
Q 007930 244 DRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSV 323 (584)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 323 (584)
.+..++.=|...++|++|++.+... +..+.+.|++..|.++..-.++.+.+.. .+..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G--------------------A~~ll~~~Q~~sg~DL~~llvevy~~~~---~~~~ 93 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV--------------------SQTLLRSGQGGSGGDLAVLLVDTFRQAG---QRVD 93 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHT---CCCC
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCC
Confidence 3445555566666777666665544 4445555555555555555555554432 1112
Q ss_pred HHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------
Q 007930 324 ASIFIRLADLYYRIGKL-RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQK---------- 392 (584)
Q Consensus 324 ~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------- 392 (584)
......+..++.....- ..=..+.++++....+. +.........+..+|..|...+++.+|..+|--
T Consensus 94 ~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a 171 (336)
T 3lpz_A 94 GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF--GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLA 171 (336)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHH
Confidence 23344444444433321 12244666677665542 222233356778899999999999999877621
Q ss_pred -H-HHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCC--------C------CchHHH-HHHH
Q 007930 393 -A-MKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGES--------K------SAFFGI-VLNQ 455 (584)
Q Consensus 393 -a-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--------~------~~~~~~-~~~~ 455 (584)
. .+..... + ..............|...++...|...+....+........ . .+..+. -+..
T Consensus 172 ~mL~ew~~~~-~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~ 249 (336)
T 3lpz_A 172 RMEYEWYKQD-E-SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFIS 249 (336)
T ss_dssp HHHHHHHHTS-C-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHH
T ss_pred HHHHHHHHhc-C-CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHH
Confidence 1 1111111 1 22222223334445788999999999888777655332111 0 011111 1112
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC
Q 007930 456 MGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR 507 (584)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 507 (584)
+-..-++.+. ...|....+.+......+.+.....+..+|..|+....
T Consensus 250 lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~ 297 (336)
T 3lpz_A 250 MLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQR 297 (336)
T ss_dssp HHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCC
T ss_pred HHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCC
Confidence 2223333443 34555555555554443322677889999999987643
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.03 E-value=5.7 Score=40.05 Aligned_cols=121 Identities=9% Similarity=-0.019 Sum_probs=81.6
Q ss_pred hCC-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHH----cCC-------
Q 007930 213 AMQ-FDEAENLCKKILEIHREHGHSASLEEAADRRLMALVY---EAKADYESALEHLVLASMVMIA----NGQ------- 277 (584)
Q Consensus 213 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~---~~~g~~~~A~~~~~~a~~~~~~----~~~------- 277 (584)
.++ ++.|+..+++.....+... ++...+.+. ....+--+|+..+.++++.... ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~---------~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHD---------IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGH---------HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchh---------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444 5778888888766543221 122222221 1223455677777776643221 111
Q ss_pred -cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 278 -ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 278 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
.+.....+..-+..+...|+++-|+.+.++|+.. .|....+|..|+.+|..+|+|+.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1122345666788888999999999999999998 7999999999999999999999999877665
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.94 E-value=3.1 Score=36.67 Aligned_cols=122 Identities=14% Similarity=-0.046 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVA 324 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 324 (584)
+..+..=|...+++++|++.+.. -+..+.+.|++..|.+...-.++.+.+.. .+...
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~--------------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~ 92 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ--------------------GALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDD 92 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH--------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH--------------------HHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCH
Confidence 44444455555566666555444 44455556666666666655555555543 22233
Q ss_pred HHHHHHHHHHHHcccH-HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 007930 325 SIFIRLADLYYRIGKL-RESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQ 391 (584)
Q Consensus 325 ~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 391 (584)
.....+..++.....- ..=..+.++++....+. +.........+..+|..+...|++.+|..+|-
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF--SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3444455554432211 12356667777776553 22223345678888999999888888887774
No 254
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.84 E-value=0.27 Score=46.82 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
..++..+|.+......+..|..+|.+|..+ .|.....+..||.+....|+.-+|.-+|.+++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 357788999999999999999999999999 9999999999999999999999999999988753
No 255
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.26 E-value=1.5 Score=33.90 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----------H
Q 007930 119 HMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEI----------Q 188 (584)
Q Consensus 119 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~ 188 (584)
..++..++-.|+|..++-.+... +.. .+.+.-+.||....+|..|+..++..+.- .
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~l----------NT~----Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHKL----------NTC----TSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC----------CBH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred hhhhhhhhhcchHhHHHHHHHhc----------chH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 36778888899998887766541 111 33666788999999999999999988732 1
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 007930 189 IEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCKKILEIH 230 (584)
Q Consensus 189 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 230 (584)
-..+--+..+.--.+..+|.++...|+.++|+.++.......
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 111111112233467788999999999999999999887653
No 256
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.52 E-value=14 Score=38.16 Aligned_cols=177 Identities=13% Similarity=0.110 Sum_probs=98.0
Q ss_pred ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCC---cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 362 APEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGY---HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 362 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
+.....-++..+|.++...++ ++..++...+.......+. ......+...+|.++.-.++ +++.+.+...+.-
T Consensus 408 ~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~d- 483 (963)
T 4ady_A 408 SRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYN- 483 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHT-
T ss_pred cHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhc-
Confidence 344556777788887776654 6777777766543211121 11222344577777776665 3455555555441
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYI 518 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 518 (584)
........+-..+|.++...|+-+-...++..+.+- ..+...-...+|..+...|+.+.+....+..
T Consensus 484 -----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~~e~vrR~aalgLGll~~g~~e~~~~li~~L 550 (963)
T 4ady_A 484 -----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------QHGNITRGLAVGLALINYGRQELADDLITKM 550 (963)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHH
T ss_pred -----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Confidence 111111245667888888888877666666555431 2222222344444555678877776666554
Q ss_pred HHHHHHHhCCCChhHHH-HHHHHHHHHHHhchHHHHHHHHHHHHHh
Q 007930 519 LKVREEKLGTANPDIDD-EKERLAELLKETGRARNRKGKSLENLLD 563 (584)
Q Consensus 519 ~~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~l~~~~~ 563 (584)
... .+|.... +...+|..|...|+. .|++..|..+.+
T Consensus 551 ~~~-------~dp~vRygaa~alglAyaGTGn~-~aIq~LL~~~~~ 588 (963)
T 4ady_A 551 LAS-------DESLLRYGGAFTIALAYAGTGNN-SAVKRLLHVAVS 588 (963)
T ss_dssp HHC-------SCHHHHHHHHHHHHHHTTTSCCH-HHHHHHHHHHHH
T ss_pred HhC-------CCHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHhcc
Confidence 432 2444433 345567777778875 444356666553
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.15 E-value=1.3 Score=42.22 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 409 GIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.++..+|++......+..|..+|.+|..+ .|..+..++.||.+....|+.-+|+-+|-+++.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 45678999999999999999999999997 445678999999999999999999999988875
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.63 E-value=18 Score=39.08 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH-----------------HHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007930 245 RRLMALVYEAKADYESALEHLVLASMVM-----------------IANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQK 307 (584)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 307 (584)
.+.+|.++...|++++|..+|.++...+ ............|..+..++...+.++.+++..+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999998763211 11111222345677888899999999999999999
Q ss_pred HHHHHHHhhcCCccc-HHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 007930 308 GLTVFKATRGEDHLS-VASIFIRLADLYYRIGKLRESKSYCENA 350 (584)
Q Consensus 308 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 350 (584)
|++.. +.+.+. ....+.++-..+...|+|++|...+...
T Consensus 925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 98762 122222 3346778888889999999997776543
No 259
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=89.37 E-value=11 Score=33.32 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=61.4
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHH
Q 007930 269 SMVMIANGQENEVAAIDVSIGNIYMSL--CRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSY 346 (584)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 346 (584)
+-++-..+.-.....++.+||.+-... .....++.+|.+++...+..++.. ...-|..+|..+++.+++.+|+..
T Consensus 242 LWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~---HvYPYtylgGy~yR~~~~reAl~~ 318 (472)
T 3re2_A 242 LWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDH---HIYPYTYLGGYYYRKKKYYEAIAS 318 (472)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTC---CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccC---CccchhhhhhhhhhcchHHHHHHH
Confidence 333344445555566667777665532 222348999999999988877433 345667788899999999999999
Q ss_pred HHHHHHHHhcC
Q 007930 347 CENALRVCAKP 357 (584)
Q Consensus 347 ~~~al~~~~~~ 357 (584)
+-++-...+..
T Consensus 319 WA~Aa~Vi~~Y 329 (472)
T 3re2_A 319 WVDAGYVAGKY 329 (472)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHc
Confidence 99998887664
No 260
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.31 E-value=13 Score=34.23 Aligned_cols=131 Identities=9% Similarity=0.017 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc-----------CCcchHHHHHHHH
Q 007930 220 ENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIAN-----------GQENEVAAIDVSI 288 (584)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----------~~~~~~~~~~~~l 288 (584)
+++|+..+.-+.....+ ...+ ..+..+.....+.++|++++++........ ........+...+
T Consensus 59 ~~ly~~fi~~f~~kin~--L~lv---~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i 133 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKINQ--LSVV---KYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI 133 (393)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHH---HTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--HHHH---HHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence 45666666555544432 2111 112345556778899999888653322211 0123455677788
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Q 007930 289 GNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCA 355 (584)
Q Consensus 289 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 355 (584)
+..|...|+.++|..+++++-.......+.+.......+...+..+...+++..+....-..+....
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988887766554455667777778888889999988887777776654
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.24 E-value=23 Score=36.77 Aligned_cols=175 Identities=12% Similarity=0.028 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcC--CcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCC
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGE--DHLSVASIFIRLADLYYRIGKLRESKSYCENALRVCAKPA 358 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 358 (584)
...+++.+|.++...+ .++..++...+.-.....++ .......+...||.++...++ +++.+.+...+.-.
T Consensus 412 k~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd---- 484 (963)
T 4ady_A 412 KGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND---- 484 (963)
T ss_dssp HHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC----
Confidence 4556666777766555 46777666655431100000 012223455677877776665 45556665555421
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 359 PATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKL 438 (584)
Q Consensus 359 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 438 (584)
+......+-..+|.++...|+.+-...++..+.+ . . +..+. -...+|..+...|+.+.+....+.....
T Consensus 485 ---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e----~-~-~e~vr-R~aalgLGll~~g~~e~~~~li~~L~~~- 553 (963)
T 4ady_A 485 ---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE----T-Q-HGNIT-RGLAVGLALINYGRQELADDLITKMLAS- 553 (963)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH----C-S-CHHHH-HHHHHHHHHHTTTCGGGGHHHHHHHHHC-
T ss_pred ---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc----c-C-cHHHH-HHHHHHHHhhhCCChHHHHHHHHHHHhC-
Confidence 1111224556778888888887655555544432 2 1 11111 1134455555667776666555544331
Q ss_pred HHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 439 RASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
.++.....+...+|..|...|+...-..++..+..
T Consensus 554 -----~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 554 -----DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp -----SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 11122223345677778888886554446655553
No 262
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=87.35 E-value=16 Score=32.95 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=55.5
Q ss_pred CcchHHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 007930 277 QENEVAAIDVSIGNIYMSL---CRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKSYCENALRV 353 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 353 (584)
.-.....++.+||.+-... |+. .++.+|.+++...+..++.. ...-|..+|..+++.+++.+|+..+-++-..
T Consensus 272 hL~rYPmALgnLgDLEe~~pt~gr~-~~~~L~~~AI~sa~~~Y~n~---HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 272 HLERYPMALGNLADLEELEPTPGRP-DPLTLYHKGIASAKTYYRDE---HIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp TTTTCHHHHHHHHHHHHHSCCTTCC-CHHHHHHHHHHHHHHHSTTC---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhCchhhcchhhHhhcCCCCCCC-CHHHHHHHHHHHHHHHhccC---CccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 3344455555666554422 222 48899999999988877433 3456777889999999999999999999988
Q ss_pred HhcC
Q 007930 354 CAKP 357 (584)
Q Consensus 354 ~~~~ 357 (584)
.+..
T Consensus 348 i~~Y 351 (550)
T 3u84_A 348 IQDY 351 (550)
T ss_dssp HTTS
T ss_pred HHHc
Confidence 8764
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.30 E-value=36 Score=36.82 Aligned_cols=187 Identities=11% Similarity=-0.038 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCC--------------CCChHHHHHHHHHHHHHHHHhcCHHHHHH
Q 007930 323 VASIFIRLADLYYRIGKLRESKSYCENALRVCAKPAP--------------ATAPEEIANGLTEISAIYEALNEHEEALK 388 (584)
Q Consensus 323 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 388 (584)
.....+.+|.++...|++++|..+|+++......... ..........|..+..++...+.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444588999999999999999999887432111000 00011123467778889999999999999
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHH
Q 007930 389 LLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINE 468 (584)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (584)
..+.|++.... ++.......+.++=..+...|+|++|...+...-. ......++..+-...+..|+.+.
T Consensus 921 fa~lAi~~~~~--~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 921 FSLLADASKET--DDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCS--CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHhccC--CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhh
Confidence 99999876322 22222344677788889999999999777744321 11112445555555555554443
Q ss_pred HHHH--------HHHHHHH-HHHHhC-CCCCchHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHH
Q 007930 469 ATEL--------FEEARGV-LEQECG-SCHLDTLGVYSNLAATYDALGRVED-AIEILEYILKVRE 523 (584)
Q Consensus 469 A~~~--------~~~a~~~-~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~ 523 (584)
=..+ .+..+.. .+.... ...|. .|..|=..+...|++.. |...|+.+.++..
T Consensus 990 L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~---Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~ 1052 (1139)
T 4fhn_B 990 LLNYSMPTLRQDVDNLLERKAFQMINVESQPC---WYNILFSWRYKHQNYRDAAAIIYEKLSRYIS 1052 (1139)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTH---HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hhCCCCccHHHHHHHHHHHHHHhCCccccCCC---HHHHhHhhhhccCChHHHHHHHHHHHHHhhh
Confidence 3221 1112211 111101 11232 23333334455677665 5567777777644
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.30 E-value=15 Score=32.57 Aligned_cols=254 Identities=10% Similarity=0.017 Sum_probs=141.7
Q ss_pred CCcHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 007930 68 PDLGPFLLKLARETISSGDNP---NKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV 144 (584)
Q Consensus 68 ~~~~~~l~~~a~~~~~~g~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 144 (584)
...+.-.+.+-...+..|+ | =+|.+.++-....+-+ .....+..+.++.-+..+.+.|++..|.++..-.++.
T Consensus 9 ~~~~~~~i~rl~~~I~~G~-y~~~YEAHQ~~RTi~~Ry~~---~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvev 84 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQ-PEEQYEAAQETRLVAARYSK---QGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDT 84 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccccHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHH
Confidence 3444555566667778888 8 6777766665554433 2344556677777788888888888888887777776
Q ss_pred HHhccCCchhhhHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 007930 145 VDIGKGSDRALAKFSGYMQLGDTCSSMGLL-DRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLC 223 (584)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 223 (584)
..+..-+.+. .....+..++.....- ..=..+.++++....+ .|...-.....+..+|..|...+++.+|..+|
T Consensus 85 y~~~~~~~~~----~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 85 FRQAGQRVDG----ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTCCCCH----HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCCCCH----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6554322222 2244555555555432 2335566777777665 33333344577788999999999999998876
Q ss_pred HH-----------HHHHHHHhCCCCCHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHc-CC-------------
Q 007930 224 KK-----------ILEIHREHGHSASLEEAADRRLM-ALVYEAKADYESALEHLVLASMVMIAN-GQ------------- 277 (584)
Q Consensus 224 ~~-----------al~~~~~~~~~~~~~~a~~~~~l-~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~------------- 277 (584)
-. .+-..-...+ +.....+... -..|...++...|...+..-....... ..
T Consensus 160 ilg~~~s~~~~a~mL~ew~~~~~---~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~ 236 (336)
T 3lpz_A 160 VLGTKESPEVLARMEYEWYKQDE---SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAEL 236 (336)
T ss_dssp TTSCTTHHHHHHHHHHHHHHTSC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCC
T ss_pred HhcCCchHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCccc
Confidence 21 1111111111 2223333333 344677889998888776655544221 11
Q ss_pred --cchHHH-HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHc
Q 007930 278 --ENEVAA-IDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRI 337 (584)
Q Consensus 278 --~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 337 (584)
.+.... -+..+...-...+. ...|....+.+......+.+.....+..+|.+|+..
T Consensus 237 ~~~p~~PLLNFl~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 237 RIFPSLPLLNFISMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp EECTTCHHHHHHHHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred ccCCCCchHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 011111 11222223334443 345555555554444333225667777778777754
No 265
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.11 E-value=21 Score=32.92 Aligned_cols=137 Identities=9% Similarity=-0.053 Sum_probs=91.3
Q ss_pred ChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC---------ChHHH
Q 007930 130 RFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDS---------DPRVA 200 (584)
Q Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~ 200 (584)
..+.-+++|+..+.-+..... +... ...+..+.....+.++|++++++............ .....
T Consensus 54 ~~~~~~~ly~~fi~~f~~kin---~L~l---v~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l 127 (393)
T 4b4t_O 54 STPLRLRLYDNFVSKFYDKIN---QLSV---VKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGIL 127 (393)
T ss_dssp SCCCCHHHHHHHHHHHHHHSC---SHHH---HHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHH
T ss_pred cchHHHHHHHHHHHHHHHhcC---HHHH---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHH
Confidence 344455667766655543211 1111 11233455567789999999887654433322211 12345
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVM 272 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 272 (584)
.+...++..|...|+.++|..+++++-.......+.+....+..+...+..+...+++..+....-..+...
T Consensus 128 ~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 128 LIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 667788999999999999999999999888887766666777888888888999999988777666555443
No 266
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=85.86 E-value=4.6 Score=27.38 Aligned_cols=45 Identities=16% Similarity=-0.044 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVM 116 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 116 (584)
+..+...|...-..|+ +++|+.+|.++++.+-......+++..-.
T Consensus 16 A~~lv~~Ave~D~~g~-y~eAl~lY~~Aie~ll~alk~e~d~~~k~ 60 (86)
T 4a5x_A 16 AATVLKRAVELDSESR-YPQALVCYQEGIDLLLQVLKGTKDNTKRC 60 (86)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Confidence 4457788888888898 99999999999998877654444444433
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.74 E-value=7.1 Score=33.23 Aligned_cols=55 Identities=24% Similarity=0.144 Sum_probs=49.4
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 459 ACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 459 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+.+.|+.++|++..+..++. +|..+.....|..++.-.|+++.|.+.++.+.++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345679999999999999987 8999999999999999999999999999888766
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.42 E-value=19 Score=31.75 Aligned_cols=144 Identities=10% Similarity=-0.030 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCC
Q 007930 72 PFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGS 151 (584)
Q Consensus 72 ~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 151 (584)
.-.+..-......|+ |=+|.+.++-....+-+.. ...+..+.++.-+..+.+.|++..|.++..-.++...+...+
T Consensus 14 ~r~l~rl~~~I~~G~-yYEAhQ~~Rtl~~Ry~~~~---~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~ 89 (312)
T 2wpv_A 14 AKTLQRFENKIKAGD-YYEAHQTLRTIANRYVRSK---SYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVK 89 (312)
T ss_dssp HHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC
Confidence 334455556677888 8888887777666554432 344566667777777888888888888777777766554333
Q ss_pred chhhhHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 007930 152 DRALAKFSGYMQLGDTCSSMGLLD-RSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFDEAENLCK 224 (584)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 224 (584)
.+. .....+..++.....-+ .=..+.++++....+. +...-.....+..+|..+...|++.+|..+|-
T Consensus 90 ~~~----~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 90 VDD----ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CSH----HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCH----HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 222 22445555554433222 2345666666665553 22222345677788888888888888877764
No 269
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=85.09 E-value=6 Score=26.74 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Q 007930 448 FFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECG 485 (584)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 485 (584)
..+..+...+..+...|+|++|+++.+++.....+...
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 45667778899999999999999999999987655444
No 270
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=84.75 E-value=23 Score=32.15 Aligned_cols=88 Identities=13% Similarity=0.079 Sum_probs=62.8
Q ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHcccHHHHHH
Q 007930 268 ASMVMIANGQENEVAAIDVSIGNIYMSLC--RFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYRIGKLRESKS 345 (584)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 345 (584)
.+-++-..+.......++.+||.+-...- ....++.+|++++...+..+... ....|..+|-.+.+.+++.+|+.
T Consensus 248 LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~---hvYPYtYlgG~~~R~~~~~eAl~ 324 (489)
T 4gq4_A 248 LLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDE---HIYPYMYLAGYHCRNRNVREALQ 324 (489)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTC---CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccC---cccceeecchHHHHhhhHHHHHH
Confidence 33344444555555666677776654322 22357889999999998887443 35667788999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 007930 346 YCENALRVCAKPA 358 (584)
Q Consensus 346 ~~~~al~~~~~~~ 358 (584)
.+.++-.......
T Consensus 325 ~wa~aa~Vi~~Yn 337 (489)
T 4gq4_A 325 AWADTATVIQDYN 337 (489)
T ss_dssp HHHHHHHHHTTSC
T ss_pred Hhhhhhhhhhhcc
Confidence 9999998877643
No 271
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=81.21 E-value=10 Score=25.64 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCc
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQ 110 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~ 110 (584)
+...-.++..+...|. |++||++.++|...+........
T Consensus 15 AH~~~RrAe~ll~~gk-ydeAIech~kAa~yL~eAmkltq 53 (97)
T 2crb_A 15 AHQQSRRADRLLAAGK-YEEAISCHRKATTYLSEAMKLTE 53 (97)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhHhhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566788999999999 99999999999988776554333
No 272
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=80.54 E-value=26 Score=29.76 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHH--hcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhCC
Q 007930 325 SIFIRLADLYYRIGKLRESKSYCENALRVC--AKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDTP 401 (584)
Q Consensus 325 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~ 401 (584)
.-+..++.+....++|++...+++++.... .. ....-.+.+..+|-. .|....+...+....+ .....
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~e--------Lt~EERnLLSvaYKNvig~rR~swRiissieq-ke~~k 79 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEE--------LTVEERNLLSVAYKNVIGARRASWRIISSIEQ-KEESR 79 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCC--------CCHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-Hhhcc
Confidence 445577888889999999999999988853 21 112223333333322 2333334444433222 11111
Q ss_pred CCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC---CCCCchHHHHHHHHHHHHHhh-----C-----CHHH
Q 007930 402 GYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG---ESKSAFFGIVLNQMGLACLQL-----Y-----RINE 468 (584)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~-----g-----~~~~ 468 (584)
+.... ..+..-|. ..=-.+=..++...+.+....- ..........+...|..|.-. | -.+.
T Consensus 80 ~~~~~-----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~ 153 (260)
T 1o9d_A 80 GNEEH-----VNSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAES 153 (260)
T ss_dssp TCHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred CcHHH-----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHH
Confidence 21110 11111111 1111223344455555444321 111112222333345555422 2 2357
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 007930 469 ATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA-LGRVEDAIEILEYILKVR 522 (584)
Q Consensus 469 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~ 522 (584)
|...|++|.++......|.||-......+.+..|+. ++++++|....++++.-.
T Consensus 154 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 154 TLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 889999999999888888899887777777776665 799999998888877654
No 273
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=78.93 E-value=11 Score=25.93 Aligned_cols=47 Identities=15% Similarity=-0.050 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHHH
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVMS 117 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 117 (584)
.+-.+...|...-..|+ |++|+.+|..+++.+.......+++..-..
T Consensus 14 ~Ai~lv~~Ave~D~~g~-y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~ 60 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESR-YQQALVCYQEGIDMLLQVLKGTKESSKRCV 60 (93)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 34557788888888888 999999999999998876544444444333
No 274
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=78.84 E-value=6.2 Score=26.51 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhc
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFS 106 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~ 106 (584)
+-.+...|...-..|+ +++|+.+|.++++.+....
T Consensus 19 Ai~lv~~Ave~D~~g~-y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 19 ARKYAINAVKADKEGN-AEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHH
Confidence 4456777878888888 9999999999999877654
No 275
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=77.86 E-value=9.9 Score=25.67 Aligned_cols=46 Identities=9% Similarity=-0.135 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHHHH
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELELVM 116 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 116 (584)
.+..+...|...-..|+ +++|+.+|..+++.+-......+++..-.
T Consensus 12 ~A~~l~~~Av~~D~~g~-y~eAl~~Y~~aie~l~~a~k~e~~~~~k~ 57 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQ-YEEAYTAYYNGLDYLMLALKYEKNPKSKD 57 (85)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 34557777877778888 99999999999998776543333333333
No 276
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=77.55 E-value=7.3 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhc
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFS 106 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~ 106 (584)
+-.+...|...-..|+ +++|+.+|.++++.+....
T Consensus 11 Ai~lv~~Ave~D~~g~-y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 11 ARKYAILAVKADKEGK-VEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHH
Confidence 4456777877888888 9999999999999877654
No 277
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=76.60 E-value=7.3 Score=25.70 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcC
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSG 107 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 107 (584)
..-...+|+-+...|+ |+.|+.+|+.+++.+.+...
T Consensus 12 i~e~~k~ARe~Al~Gn-Ydta~~yY~g~~~qI~k~l~ 47 (78)
T 2rpa_A 12 IVENVKLAREYALLGN-YDSAMVYYQGVLDQMNKYLY 47 (78)
T ss_dssp HHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHH
Confidence 3446789999999999 99999999999998776553
No 278
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=74.95 E-value=36 Score=28.40 Aligned_cols=186 Identities=12% Similarity=0.032 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhCCCCc
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDTPGYH 404 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~ 404 (584)
-+..++.+....++|++...+++++....... ...-.+.++.+|-. .|....+...+....+..... +..
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eL--------t~EERnLLsvayKnvig~rR~swRiissieqk~~~k-~~~ 77 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVEL--------TVEERNLLSVAYKNVIGARRASWRIISSIEQKEENK-GGE 77 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCC--------CHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc-Cch
Confidence 34567888888999999999999988753221 12223333333322 122233333332211111100 111
Q ss_pred ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC---CCCCchHHHHHHHHHHHHHhh----------CCHHHHHH
Q 007930 405 STIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG---ESKSAFFGIVLNQMGLACLQL----------YRINEATE 471 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~ 471 (584)
.. ..+..-| +..=-.+=...+...+.+....- ...+......+...|..|.-. .-.+.|..
T Consensus 78 ~~-----~~~i~~y-r~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~ 151 (234)
T 2br9_A 78 DK-----LKMIREY-RQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLV 151 (234)
T ss_dssp HH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHH-HHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHH
Confidence 00 0111111 11111222334445555444321 011111222233345444422 12357889
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHh
Q 007930 472 LFEEARGVLEQECGSCHLDTLGVYSNLAATYDA-LGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 472 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
.|++|.++......|.||-......+.+..|.. ++++++|....++++.-.-..+
T Consensus 152 aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~el 207 (234)
T 2br9_A 152 AYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAEL 207 (234)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999888888899887777777776665 8999999999988887554433
No 279
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=73.90 E-value=39 Score=28.38 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhCCCCcc
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDTPGYHS 405 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 405 (584)
+..++.+....++|++...+.+++....... ...-.+.+..+|-. .|....+...+....+. ....+...
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eL--------t~EERnLLSvAYKNvig~rR~swRiissieqk-e~~~~~~~ 77 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPL--------SNEERNLLSVAYKNVVGARRSSWRVISSIEQK-TSADGNEK 77 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC---CCC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-hhccCCHH
Confidence 4567888889999999999999887653221 12233344444432 23333444444322222 11112211
Q ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc--C-CCCC--chHHHHHHHHHHHHHhh-----C-----CHHHHH
Q 007930 406 TIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS--G-ESKS--AFFGIVLNQMGLACLQL-----Y-----RINEAT 470 (584)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~-~~~~--~~~~~~~~~l~~~~~~~-----g-----~~~~A~ 470 (584)
.. .+..-|. ..=-.+=...+...+.+.... . .... ......+...|..|.-. | -.+.|.
T Consensus 78 ~~-----~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~ 151 (248)
T 3uzd_A 78 KI-----EMVRAYR-EKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSE 151 (248)
T ss_dssp -H-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HH-----HHHHHHH-HHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHH
Confidence 11 1111111 111112233444555544332 0 1111 22233333445555432 1 236788
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHH
Q 007930 471 ELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA-LGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 471 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~ 525 (584)
..|++|.++......|.||-......+.+..|+. ++++++|....++|+.-.-..
T Consensus 152 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~e 207 (248)
T 3uzd_A 152 KAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAE 207 (248)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888899887777777766655 799999999988887765443
No 280
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=73.70 E-value=40 Score=28.48 Aligned_cols=183 Identities=11% Similarity=0.050 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhCCCCc
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDTPGYH 404 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~ 404 (584)
-+..+|.+....++|++...+.+++.+..... ...-.+.|+.+|.. .|....+...+....+. ....|..
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eL--------t~EERNLLSvAYKNvIgarR~swRiissieqk-ee~~g~~ 103 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKKVAGMDVEL--------TVEERNLLSVAYKNVIGARRASWRIISSIEQK-EENKGGE 103 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhccCCchhHHHHHhHHHHh-hhccccH
Confidence 45567788888999999999999887653221 12233344444432 23333344433322221 1111211
Q ss_pred ccHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHc--C-CCCCchHHHHHHHHHHHHHhh-----C-----CHHHHH
Q 007930 405 STIAGIEAQMGVMLYVVGRY-GEARSSFESAVVKLRAS--G-ESKSAFFGIVLNQMGLACLQL-----Y-----RINEAT 470 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~-----g-----~~~~A~ 470 (584)
... .+..-|. .+. .+=...+...+.+.... . ..........+...|..|.-. | -.+.|.
T Consensus 104 ~~~-----~~i~~yr--~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~ 176 (261)
T 3ubw_A 104 DKL-----KMIREYR--QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSL 176 (261)
T ss_dssp HHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHH
Confidence 110 1111111 111 12233444555544332 0 111111222233345555422 2 236788
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 007930 471 ELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA-LGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 471 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~ 524 (584)
..|++|.++......|.||-......+.+..|.. ++++++|....++|.+-.-.
T Consensus 177 ~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~ 231 (261)
T 3ubw_A 177 VAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 231 (261)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999888888899887777777776665 79999999998888775443
No 281
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=72.87 E-value=17 Score=26.42 Aligned_cols=36 Identities=19% Similarity=0.089 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhc
Q 007930 70 LGPFLLKLARETISSGDNPNKALDYAIRASKSFERFS 106 (584)
Q Consensus 70 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~ 106 (584)
.+..++..|...-..|+ |++|+.+|..|++++-...
T Consensus 17 kAi~lv~~Ave~D~ag~-y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGN-YEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHH
Confidence 34556777877778888 9999999999999887665
No 282
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.28 E-value=79 Score=31.21 Aligned_cols=27 Identities=7% Similarity=-0.136 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHH
Q 007930 279 NEVAAIDVSIGNIYMSLCRFDEAIFSY 305 (584)
Q Consensus 279 ~~~~~~~~~la~~~~~~g~~~~A~~~~ 305 (584)
+......+.........|+-.+|....
T Consensus 99 p~~~~~~c~~~~A~~~~G~~~~a~~~~ 125 (618)
T 1qsa_A 99 PGTTEAQCNYYYAKWNTGQSEEAWQGA 125 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 344444455555666667765554433
No 283
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.40 E-value=23 Score=26.52 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=39.9
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 460 CLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 460 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
+..+|+-++-.+.+...+. +.+-.+..+..+|.+|.+.|+..+|.+++.+|.+-
T Consensus 101 lv~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4456666665555544332 14555789999999999999999999999999874
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.16 E-value=22 Score=27.64 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcc
Q 007930 344 KSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGIEAQMGVMLYVVGR 423 (584)
Q Consensus 344 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 423 (584)
..++++++..+.....-.+.+....+|...+... ++ +.+.|..... . +.....+..|...|..+...|+
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~---~--~IG~~~AlfY~~wA~~lE~~~~ 111 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHN---Q--GIGVSLAQFYISWAEEYEAREN 111 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHH---T--TSSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHH---C--CcchhhHHHHHHHHHHHHHcCC
Confidence 4466777776544222234456677777766653 33 4445543322 2 3333447788899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007930 424 YGEARSSFESAVVK 437 (584)
Q Consensus 424 ~~~A~~~~~~a~~~ 437 (584)
+.+|.++|+.+++.
T Consensus 112 ~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 112 FRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999983
No 285
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=70.03 E-value=50 Score=28.03 Aligned_cols=69 Identities=17% Similarity=0.103 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCC----------hHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Q 007930 161 YMQLGDTCSSMGL----------LDRSVWCYESGLEIQIEAL--GDSDPRVAETCRYLAEAHI-QAMQFDEAENLCKKIL 227 (584)
Q Consensus 161 ~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 227 (584)
+-..|..|..... .+.|...|++|.++....+ .+.+|-......+.+..|+ ..++.++|..+.++++
T Consensus 145 ~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AF 224 (268)
T 3efz_A 145 IKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAI 224 (268)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455777654432 3678899999999998777 7788888777777777766 5799999999999988
Q ss_pred HH
Q 007930 228 EI 229 (584)
Q Consensus 228 ~~ 229 (584)
+-
T Consensus 225 de 226 (268)
T 3efz_A 225 QA 226 (268)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=69.67 E-value=46 Score=27.42 Aligned_cols=125 Identities=12% Similarity=0.057 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHhCCC--CcccHHHHHHHHH
Q 007930 340 LRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEH--EEALKLLQKAMKLLEDTPG--YHSTIAGIEAQMG 415 (584)
Q Consensus 340 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~ 415 (584)
.+.-...|+..+..... ++++-+...-|..-..-.+-.|.. ..=..++++++..+.+... +.+....++...+
T Consensus 51 l~~~r~~fE~~i~~~~~---~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya 127 (223)
T 4aez_C 51 LQKERMGHERKIETSES---LDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYV 127 (223)
T ss_dssp HHHHHHHHHHHHHHGGG---SSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---CCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHH
Confidence 34455556666655322 445544333332222222223321 1234677788777665532 3444455555555
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 416 VMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
.. .+.+..+|.-... ..+| ...+..|...|..+...|++.+|...|+..++.
T Consensus 128 ~~------~~~p~~if~~L~~--~~IG----~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 128 NY------IDEPVELFSFLAH--HHIG----QESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp TT------CSCHHHHHHHHHH--TTCS----TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hc------cCCHHHHHHHHHH--CCcc----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 42 2355566655443 1222 234678889999999999999999999999986
No 287
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=69.33 E-value=49 Score=27.59 Aligned_cols=184 Identities=16% Similarity=0.092 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHcCCcch
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAK-ADYESALEHLVLASMVMIANGQENE 280 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~ 280 (584)
-+..++.+..+.++|++...+.+++.+..+... . .-.+.++.+|... |....+...+....+.-...++...
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt----~---EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~ 79 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELT----V---EERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDK 79 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCC----H---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHH
Confidence 345678888889999999999999887532211 1 1133344443321 2233333333221111000111111
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC--c-ccHHHHHHHHHHHHHHccc----------HHHHHHHH
Q 007930 281 VAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED--H-LSVASIFIRLADLYYRIGK----------LRESKSYC 347 (584)
Q Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~-~~~~~~~~~la~~~~~~g~----------~~~A~~~~ 347 (584)
..+..-|. ..=-.+-...+...+.+.....-+. . ...+..+-..|..|...-. .+.|...|
T Consensus 80 -----~~~i~~yr-~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY 153 (234)
T 2br9_A 80 -----LKMIREYR-QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAY 153 (234)
T ss_dssp -----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHH-HHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 11111111 1111223344555555554432111 1 1122233344555543222 35788899
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHh
Q 007930 348 ENALRVCAKPAPATAPEEIANGLTEISAIYE-ALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 348 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 399 (584)
++|.++..... .+.+|.......+.+..|. -.++.++|....++++.-.-.
T Consensus 154 ~~A~~iA~~~L-~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 154 KAASDIAMTEL-PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999987543 4455555555555555555 479999999988887765433
No 288
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=69.30 E-value=62 Score=28.79 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 427 ARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 427 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
++.+|.+++...+....+.+. .-|..+|-.+++.+++.+|+..+..+-...+.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 788999999988887665543 44667888999999999999999998887543
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=68.31 E-value=40 Score=26.21 Aligned_cols=83 Identities=11% Similarity=0.099 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhc
Q 007930 92 LDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSM 171 (584)
Q Consensus 92 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (584)
..++++++..+.....=.+++-....+...+... +++..+|..... +..|..... .|...|..+...
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~---~~IG~~~Al----fY~~wA~~lE~~ 109 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHN---QGIGVSLAQ----FYISWAEEYEAR 109 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHH---TTSSTTBHH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHH---CCcchhhHH----HHHHHHHHHHHc
Confidence 5677888877765443345566677666666542 446667766443 223344432 388889999999
Q ss_pred CChHHHHHHHHHHHHH
Q 007930 172 GLLDRSVWCYESGLEI 187 (584)
Q Consensus 172 g~~~~A~~~~~~al~~ 187 (584)
|++.+|..+|+.+++.
T Consensus 110 ~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 110 ENFRKADAIFQEGIQQ 125 (164)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999886
No 290
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=67.54 E-value=57 Score=27.68 Aligned_cols=182 Identities=16% Similarity=0.106 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHhCCCCCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHcCC
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIH--REHGHSASLEEAADRRLMALVYEA-KADYESALEHLVLASMVMIANGQ 277 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~a~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~ 277 (584)
.-+..++.+..+.++|++...+.+++.+.. +... . .-.+.+..+|.. .|....+...+....+.....++
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt----~---EERnLLSvaYKNvig~rR~swRiissieqke~~k~~ 81 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELT----V---EERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN 81 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCC----H---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc
Confidence 445567888889999999999999988753 2111 1 113333333332 13333333333221111000111
Q ss_pred cchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC--cc-cHHHHHHHHHHHHHHccc----------HHHHH
Q 007930 278 ENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED--HL-SVASIFIRLADLYYRIGK----------LRESK 344 (584)
Q Consensus 278 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~-~~~~~~~~la~~~~~~g~----------~~~A~ 344 (584)
... ..+..-|. ..=-.+-...+..++.+.....-+. .+ ..+..+-..|..|...-. .+.|.
T Consensus 82 ~~~-----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~ 155 (260)
T 1o9d_A 82 EEH-----VNSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL 155 (260)
T ss_dssp HHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence 111 11111111 1111233344555555554432111 11 222333344655543322 35788
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHH
Q 007930 345 SYCENALRVCAKPAPATAPEEIANGLTEISAIYE-ALNEHEEALKLLQKAMKL 396 (584)
Q Consensus 345 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~ 396 (584)
..|++|.++..... .+.+|.......+.+..|+ -.++.++|..+.++++.-
T Consensus 156 ~aY~~A~~iA~~~L-~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 156 TAYKAAQDIATTEL-APTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 89999999987543 4455555555555565555 479999998887777654
No 291
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.76 E-value=60 Score=27.70 Aligned_cols=118 Identities=8% Similarity=-0.106 Sum_probs=76.8
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Q 007930 417 MLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYS 496 (584)
Q Consensus 417 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 496 (584)
-+.+.|+.++|+...+..++ ..|..+.....+.++++-.|+++.|.+-++.+.++ +|+......
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--------~p~~~~~a~ 69 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGAS 69 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhhHHHH
Confidence 45678999999999999888 45666788888999999999999999999999998 776543221
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhh
Q 007930 497 NLAATYDALGRVEDAIEILEYILKVREEKLG-------TANPDIDDEKERLAELLKETGRARNRKGKSLENLLDSN 565 (584)
Q Consensus 497 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~l~~~~~~~ 565 (584)
.|. ++ -++-.....++. ...|........-+......|+.++|. .....+++..
T Consensus 70 ----~yr------~l----I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~-~lr~~A~e~a 130 (273)
T 1zbp_A 70 ----QLR------HL----VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELR 130 (273)
T ss_dssp ----HHH------HH----HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHC
T ss_pred ----HHH------HH----HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHhcC
Confidence 111 01 111122222222 112333334444566666789999988 6666665543
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.30 E-value=51 Score=26.65 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHH-HhcCCCCCChHHHHHHHHHHHHHHHHhcCH--H-HHH-HHHHHHHHHHHhCCC--CcccHHHHHH
Q 007930 340 LRESKSYCENALRV-CAKPAPATAPEEIANGLTEISAIYEALNEH--E-EAL-KLLQKAMKLLEDTPG--YHSTIAGIEA 412 (584)
Q Consensus 340 ~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~-~A~-~~~~~a~~~~~~~~~--~~~~~~~~~~ 412 (584)
...-...|++.+.. ... ++++-+...-|..-..-..-.|.. . .-. ..+++++..+.+... +++....++.
T Consensus 8 l~~~r~~fE~~l~~~l~~---~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl 84 (202)
T 3esl_A 8 LNQTKIAYEQRLLNDLED---MDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWI 84 (202)
T ss_dssp HHHHHHHHHHHHHHTGGG---CSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccc---CCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHH
Confidence 34445556666655 222 555544433333322222333433 2 123 678888888766533 4455556665
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 413 QMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
..+..+ ..+...++..+|.-... ..+|. ..+..|...|..+...|++++|...|+..++.
T Consensus 85 ~Ya~~~-~~~~~~~p~~if~~L~~--~~IG~----~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 85 WYINLF-LSNNFHESENTFKYMFN--KGIGT----KLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHH-STTCHHHHHHHHHHHHH--HTSST----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhh-cccccCCHHHHHHHHHH--CCCcH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555554 23446677778777655 23332 34678889999999999999999999999986
No 293
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=65.84 E-value=62 Score=27.46 Aligned_cols=184 Identities=12% Similarity=0.105 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHH---hcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhC
Q 007930 325 SIFIRLADLYYRIGKLRESKSYCENALRVC---AKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDT 400 (584)
Q Consensus 325 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~ 400 (584)
.-+..++.+....++|++...+++++.+.. .. ....-.+.++.+|-. .|....+...+....+ ....
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~e--------Lt~EERnLLSvAyKNvIg~rR~swRiissieq-ke~~ 99 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEE--------LTVEERNLLSVAYKNAVGSRRSSWRIISSVEQ-KEHS 99 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--C--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCC--------CCHHHHHHHHHHHHHHhccchHHHHHHHHHHH-Hhhc
Confidence 344567888888999999999999988753 11 112223334444432 2333333333332211 1111
Q ss_pred CCCcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC---CCCCchHHHHHHHHHHHHHhh----------CCHH
Q 007930 401 PGYHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASG---ESKSAFFGIVLNQMGLACLQL----------YRIN 467 (584)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~----------g~~~ 467 (584)
.+.... ..+..-| +..=-.+=...++..+.+....- ...+......+...|..|.-. .-.+
T Consensus 100 k~~~~~-----~~~i~~y-r~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e 173 (260)
T 2npm_A 100 RNAEDA-----SKMCGKY-RSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAE 173 (260)
T ss_dssp TTCHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cCcHHH-----HHHHHHH-HHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHH
Confidence 121110 0111111 11111222334445555444321 111111222233345544422 1235
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 007930 468 EATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDA-LGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 468 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~ 524 (584)
.|...|++|.++. ....|.||-......+.+..|+. +++.++|....+++.+-.-.
T Consensus 174 ~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 230 (260)
T 2npm_A 174 DALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIE 230 (260)
T ss_dssp HHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 7888999999998 76788888877777777776665 89999999999888775433
No 294
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.44 E-value=53 Score=26.55 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcCC
Q 007930 429 SSFESAVVKLRAS-GESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNLAATYDALGR 507 (584)
Q Consensus 429 ~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 507 (584)
..+++++..+... .-.+++....+|...+..+ ..+...++...|.-.... .-....+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK------GIGTKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH------TSSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHcCC
Confidence 5788888876543 1123445566677666654 234466888888776554 1234567788899999999999
Q ss_pred hHHHHHHHHHHHHH
Q 007930 508 VEDAIEILEYILKV 521 (584)
Q Consensus 508 ~~~A~~~~~~a~~~ 521 (584)
+.+|...|+..++.
T Consensus 131 ~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 131 FLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999985
No 295
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=65.36 E-value=57 Score=26.92 Aligned_cols=177 Identities=9% Similarity=-0.000 Sum_probs=103.1
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHH----HHhcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhCCCC
Q 007930 329 RLADLYYRIGKLRESKSYCENALR----VCAKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDTPGY 403 (584)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~ 403 (584)
.++.+....++|++...+.+++.. .... ....-.+.++.+|-. .|....+...+.... ....+.
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~e--------Lt~EERnLLSvAYKNvig~rR~swRiissiE---qkek~~ 79 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSE--------FDDEERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQLNN 79 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCSC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCC--------CCHHHHHHHHHHHHHhhcccHHHHHHHHHHH---HHHcCC
Confidence 678888899999999999999988 3222 112233334444432 222333333332211 111121
Q ss_pred cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-----hhCCHHHHHHHHHHHHH
Q 007930 404 HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACL-----QLYRINEATELFEEARG 478 (584)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~ 478 (584)
.. ...+..-|.. .=-.+-...+...+.+....--+........+-..|..|. ..|+.+.|...|+.|.+
T Consensus 80 ~~-----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~ 153 (227)
T 2o8p_A 80 DE-----LVKICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT 153 (227)
T ss_dssp HH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHH
Confidence 11 1112222211 1122334456666666665433222222333334455554 34678999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 007930 479 VLEQECGSCHLDTLGVYSNLAATYD-ALGRVEDAIEILEYILKVR 522 (584)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 522 (584)
+......|.||-......+.+..|. -++++++|....++|+.+.
T Consensus 154 iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 154 LLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 9988788888887777777766554 6799999999999998764
No 296
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=65.26 E-value=12 Score=28.98 Aligned_cols=73 Identities=5% Similarity=-0.141 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 204 RYLAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADR-RLMALVYEAKADYESALEHLVLASMVMIANG 276 (584)
Q Consensus 204 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~-~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 276 (584)
+.-+..++..|+|-+|-+.++......+..........+.+. ...|......|+..-|...+.+++..+....
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 445666777899999999999887643221001223344555 5566777888999999999999988766543
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.19 E-value=38 Score=25.94 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Q 007930 90 KALDYAIRASKSFERFSGSGQELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCS 169 (584)
Q Consensus 90 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~ 169 (584)
.-...+++++..+.....=.+++-....+...+.. .+++...|..... +..|.... ..|...|..+.
T Consensus 46 ~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~---~~IG~~~A----lfYe~wA~~lE 112 (152)
T 4a1g_A 46 YLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYN---HGIGTLSS----PLYIAWAGHLE 112 (152)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHT---TTTTTTBH----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHH---CCCcHHHH----HHHHHHHHHHH
Confidence 35566777777775543333445555555554433 2447777766543 22233333 23788899999
Q ss_pred hcCChHHHHHHHHHHHHH
Q 007930 170 SMGLLDRSVWCYESGLEI 187 (584)
Q Consensus 170 ~~g~~~~A~~~~~~al~~ 187 (584)
..|++.+|..+|+.+++.
T Consensus 113 ~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 113 AQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 999999999999999886
No 298
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=63.63 E-value=31 Score=23.29 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=28.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHH
Q 007930 497 NLAATYDALGRVEDAIEILEYILKVREEKLG-TANPDIDDEK 537 (584)
Q Consensus 497 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~p~~~~~~ 537 (584)
..|.-.-..|++++|+.+|..+++.+...+. ..+|.....+
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~l 62 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNL 62 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 3344446789999999999999999877653 3345443333
No 299
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=63.61 E-value=68 Score=27.16 Aligned_cols=181 Identities=13% Similarity=-0.009 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHhcCCCCCCh
Q 007930 285 DVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR-IGKLRESKSYCENALRVCAKPAPATAP 363 (584)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 363 (584)
+..++.+..+.++|++...+.+++.+. +......=.+.++.+|-. .|....+...+.......+.. + +.
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~-------~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~--g-~~ 103 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGM-------DVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENK--G-GE 103 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--T-CH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-------CCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhcc--c-cH
Confidence 355677888889999999888887764 122333333444444422 233344444443322221110 1 11
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC----CCcccHHHHHHHHHHHHHHh-----c-----cHHHHHH
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP----GYHSTIAGIEAQMGVMLYVV-----G-----RYGEARS 429 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~l~~~~~~~-----g-----~~~~A~~ 429 (584)
.. ..+..-|.. .=-.+=...+...+.+..... .........+...|..|.-. | -.+.|..
T Consensus 104 ~~-----~~~i~~yr~-kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~ 177 (261)
T 3ubw_A 104 DK-----LKMIREYRQ-MVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLV 177 (261)
T ss_dssp HH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 11 111111110 001122233444444432221 11222233344456655432 2 1367889
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHH
Q 007930 430 SFESAVVKLRASGESKSAFFGIVLNQMGLACL-QLYRINEATELFEEARGVLE 481 (584)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~ 481 (584)
.|++|.++....-++.+|.......+.+..|. -.++.++|..+.++|..-.-
T Consensus 178 aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai 230 (261)
T 3ubw_A 178 AYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 230 (261)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999998765444445544444445555555 47999999999888876543
No 300
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=63.27 E-value=90 Score=28.45 Aligned_cols=67 Identities=6% Similarity=0.064 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 007930 427 ARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQECGSCHLDTLGVYSNL 498 (584)
Q Consensus 427 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (584)
++.+|.+++...+....+.+. .-|..+|-.+++.+++.+|+..+..+-...+...- ..+..++|..+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY--~reDeEIYKEf 364 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNY--CREDEEIYKEF 364 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--CGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHcCC--CcchHHHHHHH
Confidence 778899999988877665543 45667888999999999999999998887544322 23344444443
No 301
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=63.20 E-value=31 Score=23.08 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHH-HHHHHHH
Q 007930 159 SGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETC-RYLAEAH 210 (584)
Q Consensus 159 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~ 210 (584)
++...-|.-++..++|.+|..+|+++..+ .++|..-.++ +.++.|-
T Consensus 54 r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 54 RSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHH
Confidence 45667788899999999999999999877 3456665555 5565553
No 302
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=60.92 E-value=70 Score=30.02 Aligned_cols=102 Identities=8% Similarity=-0.041 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHHHHhccC----Cc---hhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---HhCCCChHHH
Q 007930 131 FEEAVPVLERSIEVVDIGKG----SD---RALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIE---ALGDSDPRVA 200 (584)
Q Consensus 131 ~~~A~~~~~~al~~~~~~~~----~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~ 200 (584)
.+++...+.++...+..... .. .....+.....+-.+|++.++..-+...++.. +.... ...-.....+
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i-~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNF-QPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTH-HHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHh-ccCCCCcChhhCCccceE
Confidence 44555566666555422111 11 22223334556678999999999998887543 33210 0000113567
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHh
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEI-HREH 233 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~ 233 (584)
..++.+|..+...++|.+|.+.+..|+.. ++..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 78899999999999999999999999998 7754
No 303
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=60.66 E-value=1.4e+02 Score=29.74 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHH--HHhcCHHHHHHHHHH
Q 007930 366 IANGLTEISAIY--EALNEHEEALKLLQK 392 (584)
Q Consensus 366 ~~~~~~~la~~~--~~~g~~~~A~~~~~~ 392 (584)
....+..+..++ ...|+++.|++.+++
T Consensus 535 t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 535 ICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555555555 778999999887766
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.48 E-value=91 Score=32.86 Aligned_cols=93 Identities=9% Similarity=-0.008 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHH-------------HHhhc--CCcccHHHHHHHHHHHHHHcccHHHHHHHHH
Q 007930 284 IDVSIGNIYMSLCRFDEAIFSYQKGLTVF-------------KATRG--EDHLSVASIFIRLADLYYRIGKLRESKSYCE 348 (584)
Q Consensus 284 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 348 (584)
.-+.+|.++...|++++|..+|+++-.-. ..... +........|..+..++...+-++-++.+.+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34789999999999999999998764211 00000 0012234467778888888889999999999
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh
Q 007930 349 NALRVCAKPAPATAPEEIANGLTEISAIYEAL 380 (584)
Q Consensus 349 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 380 (584)
.|+..... ++.......+..+-......
T Consensus 922 lAI~~~~~----dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 922 LADASKET----DDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHTCCS----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccc----CCccchHHHHHHHHHHHhhC
Confidence 88886532 23333344555554444433
No 305
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=60.12 E-value=34 Score=32.12 Aligned_cols=72 Identities=11% Similarity=0.015 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HH
Q 007930 202 TCRYLAEAHIQAMQFDEAENLCKKILEIHR--EHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMV-MI 273 (584)
Q Consensus 202 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~ 273 (584)
....+-.+|++.++...+...++..-.... ..........+..++.+|.++...++|.+|.+.+..|... +.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 344566789999999999888854433211 1111133456788999999999999999999999999887 54
No 306
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=59.84 E-value=26 Score=24.18 Aligned_cols=67 Identities=12% Similarity=-0.072 Sum_probs=41.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC
Q 007930 206 LAEAHIQAMQFDEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANG 276 (584)
Q Consensus 206 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 276 (584)
.|..++..|+|-+|-+.++......+... .....+.+....|......|+. |...+.+++..+...+
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~--~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~ 73 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEE--RRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLP 73 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCch--HHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCC
Confidence 45566777999999888888876552211 2223344444555556566776 7777777777665443
No 307
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=59.70 E-value=47 Score=24.05 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=28.7
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHhCC--CChhHHHHHHHHHH
Q 007930 501 TYDALGRVEDAIEILEYILKVREEKLGT--ANPDIDDEKERLAE 542 (584)
Q Consensus 501 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~p~~~~~~~~l~~ 542 (584)
-.-..|++++|+.+|..+++++...+.. .++.....+.....
T Consensus 27 e~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~ 70 (117)
T 2cpt_A 27 QEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCT 70 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3456799999999999999998876532 35544444443333
No 308
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=59.26 E-value=35 Score=22.47 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 007930 494 VYSNLAATYDALGRVEDAIEILEYILKVREEKLG 527 (584)
Q Consensus 494 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 527 (584)
-...+|+=|...|+|+.|+.+|+.+++...+.+.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~ 47 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLY 47 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999999999998777654
No 309
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=57.97 E-value=82 Score=26.26 Aligned_cols=182 Identities=13% Similarity=0.099 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhCCCC-
Q 007930 326 IFIRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLEDTPGY- 403 (584)
Q Consensus 326 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~- 403 (584)
-+..+|.+....++|++...+.+++.+..... ...-.+.++.+|-. .|....+...+....+. ....+.
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~eL--------s~EERnLLSvaYKNvig~rR~swRiissieqk-e~~~~~~ 80 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGEEL--------SCEERNLLSVAYKNVVGGQRAAWRVLSSIEQK-SNEEGSE 80 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSTTCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-HhhcCCH
Confidence 45567888899999999999999988763221 12333444444432 23334444444332222 211121
Q ss_pred -cccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc--C-CCCCchHHHHHHHHHHHHHh-----hCC-----HHHH
Q 007930 404 -HSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRAS--G-ESKSAFFGIVLNQMGLACLQ-----LYR-----INEA 469 (584)
Q Consensus 404 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~-~~~~~~~~~~~~~l~~~~~~-----~g~-----~~~A 469 (584)
......-+. ..+ -.+=...+...+.+.... . ...+......+...|..|.- .|+ .+.|
T Consensus 81 ~~~~~i~~yr--~ki------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a 152 (236)
T 3iqu_A 81 EKGPEVREYR--EKV------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSA 152 (236)
T ss_dssp CCCSHHHHHH--HHH------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHH
T ss_pred HHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence 111111110 000 112233344444443322 0 01111122223344555542 233 4678
Q ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHH
Q 007930 470 TELFEEARGVLEQECGSCHLDTLGVYSNLAATYD-ALGRVEDAIEILEYILKVREE 524 (584)
Q Consensus 470 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 524 (584)
...|++|.++......|.||-......+.+..|+ -++++++|....++|.+-.-.
T Consensus 153 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~ 208 (236)
T 3iqu_A 153 RSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMA 208 (236)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 8999999999988888889988777777776665 569999999998888765433
No 310
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=56.91 E-value=88 Score=26.30 Aligned_cols=182 Identities=10% Similarity=-0.011 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHhcCCCCCCh
Q 007930 285 DVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR-IGKLRESKSYCENALRVCAKPAPATAP 363 (584)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 363 (584)
+..++.+..+.++|++...+.+++.+. +......=.+.++.+|-. .|....+...+.......... .+...
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~-------~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~-~~~~~ 78 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTEL-------NEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSAD-GNEKK 78 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCC-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhcc-CCHHH
Confidence 355677888899999998888887664 122333334444444432 334444444443322221110 01111
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC----CCc--ccHHHHHHHHHHHHHHhc----------cHHHH
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP----GYH--STIAGIEAQMGVMLYVVG----------RYGEA 427 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g----------~~~~A 427 (584)
.....-+. ..+ -.+=...+...+.+..... ... ......+...|..|.-.- -.+.|
T Consensus 79 ~~~i~~yr--~ki------e~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a 150 (248)
T 3uzd_A 79 IEMVRAYR--EKI------EKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESS 150 (248)
T ss_dssp HHHHHHHH--HHH------HHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHH--HHH------HHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence 11111111 111 1122223333443332221 122 223344445566654332 23678
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHHH
Q 007930 428 RSSFESAVVKLRASGESKSAFFGIVLNQMGLACL-QLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~ 482 (584)
...|++|.++....-++.+|.......+.+..|+ -.++.++|..+.++|..-.-.
T Consensus 151 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~ 206 (248)
T 3uzd_A 151 EKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA 206 (248)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 8999999998875444444544444444555544 479999999998888775433
No 311
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.55 E-value=65 Score=24.66 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhCCC--CcccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhh
Q 007930 386 ALKLLQKAMKLLEDTPG--YHSTIAGIEAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQL 463 (584)
Q Consensus 386 A~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (584)
=..++++++..+.+... +.+....++...+... +++..+|.-... ..+| ...+..|...|..+...
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~--~~IG----~~~AlfYe~wA~~lE~~ 114 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYN--HGIG----TLSSPLYIAWAGHLEAQ 114 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHT--TTTT----TTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHH--CCCc----HHHHHHHHHHHHHHHHc
Confidence 44667777777655422 3444445554444332 335666655443 1222 23467888899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 007930 464 YRINEATELFEEARGV 479 (584)
Q Consensus 464 g~~~~A~~~~~~a~~~ 479 (584)
|++++|.+.|+..++.
T Consensus 115 g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 115 GELQHASAVLQRGIQN 130 (152)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999985
No 312
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=55.05 E-value=45 Score=22.38 Aligned_cols=41 Identities=22% Similarity=0.101 Sum_probs=27.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHH
Q 007930 499 AATYDALGRVEDAIEILEYILKVREEKLG-TANPDIDDEKER 539 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~p~~~~~~~~ 539 (584)
|.-.-..|++++|+.+|..+++.+..... ..+|.....+..
T Consensus 20 Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~ 61 (85)
T 2v6x_A 20 AIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRA 61 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 33445679999999999999998877543 334554444433
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.61 E-value=67 Score=33.86 Aligned_cols=69 Identities=13% Similarity=-0.045 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----------------HHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHH
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIH-----------------REHGHSASLEEAADRRLMALVYEAKADYESALE 263 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~ 263 (584)
..-+.+|.++...|++++|..+|+++-.-. .... ........|..+..++...+-++-+++
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~ 918 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALE 918 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 345789999999999999999998764211 0000 111223356667777777777777777
Q ss_pred HHHHHHHH
Q 007930 264 HLVLASMV 271 (584)
Q Consensus 264 ~~~~a~~~ 271 (584)
..+.|+..
T Consensus 919 fA~lAI~~ 926 (950)
T 4gq2_M 919 FSLLADAS 926 (950)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77777654
No 314
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=54.58 E-value=93 Score=25.91 Aligned_cols=180 Identities=10% Similarity=0.011 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHhcCCCCCCh
Q 007930 285 DVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR-IGKLRESKSYCENALRVCAKPAPATAP 363 (584)
Q Consensus 285 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 363 (584)
+..+|.+..+.++|++...+.+++.+. +......=.+.++.+|-. .|....+...+.......+.. ++...
T Consensus 11 ~v~~AklaeqaeRyddM~~~mk~v~~~-------~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~-~~~~~ 82 (236)
T 3iqu_A 11 LIQKAKLAEQAERYEDMAAFMKGAVEK-------GEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEE-GSEEK 82 (236)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TCCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-------CCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhc-CCHHH
Confidence 355778888999999999998888765 123333334445555432 344444555444332222111 11111
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC----CCcccHHHHHHHHHHHHHHh-----cc-----HHHHHH
Q 007930 364 EEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTP----GYHSTIAGIEAQMGVMLYVV-----GR-----YGEARS 429 (584)
Q Consensus 364 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~l~~~~~~~-----g~-----~~~A~~ 429 (584)
.....-+. ..+ -.+=...+...+.+..... .........+...|..|.-. |+ .+.|..
T Consensus 83 ~~~i~~yr--~ki------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~ 154 (236)
T 3iqu_A 83 GPEVREYR--EKV------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARS 154 (236)
T ss_dssp CSHHHHHH--HHH------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHH
T ss_pred HHHHHHHH--HHH------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence 11111111 011 1122233344444433221 11222233344556665432 32 467889
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHH
Q 007930 430 SFESAVVKLRASGESKSAFFGIVLNQMGLACL-QLYRINEATELFEEARGVL 480 (584)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~ 480 (584)
.|++|.++....-++.+|.......+.+..|+ -.++.++|..+.++|..-.
T Consensus 155 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 155 AYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999998875444444544444444555544 5699999999988887653
No 315
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=54.34 E-value=50 Score=22.69 Aligned_cols=40 Identities=18% Similarity=0.043 Sum_probs=27.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHH
Q 007930 498 LAATYDALGRVEDAIEILEYILKVREEKLG-TANPDIDDEK 537 (584)
Q Consensus 498 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~p~~~~~~ 537 (584)
.|.-.-..|++++|+.+|..+++.+...+. ..+|.....+
T Consensus 21 ~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l 61 (93)
T 1wfd_A 21 RAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVL 61 (93)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 334445679999999999999999887654 3345444433
No 316
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=53.98 E-value=46 Score=22.23 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 500 ATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 500 ~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
.-.-..|++++|+.+|.++++.+...+
T Consensus 19 ve~D~~g~y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 334578999999999999999887754
No 317
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=53.81 E-value=47 Score=22.23 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=22.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 499 AATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
|.-.-..|++++|+.+|.++++.+...+
T Consensus 26 Ave~D~~g~y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3344578999999999999999887653
No 318
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=52.16 E-value=37 Score=23.38 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVV 145 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~ 145 (584)
.+|..+...|+++.|+.+|-+|+.++
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 57889999999999999999999886
No 319
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=51.52 E-value=1.1e+02 Score=25.95 Aligned_cols=96 Identities=7% Similarity=-0.043 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHHHHHhcc--CCchhhhH
Q 007930 91 ALDYAIRASKSFERFSGS-GQELELVMSLHMLAAIYCSLGR----------FEEAVPVLERSIEVVDIGK--GSDRALAK 157 (584)
Q Consensus 91 A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~ 157 (584)
-...+...+.+..+..-+ ..++..+..+-..|..|.-.-. .+.|...|+.|.++..... .+.+|...
T Consensus 117 L~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRL 196 (268)
T 3efz_A 117 ILLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYL 196 (268)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 334556666666654321 1122444455566777754322 3678899999999987666 67777543
Q ss_pred HHHHHHHHHHHH-hcCChHHHHHHHHHHHHH
Q 007930 158 FSGYMQLGDTCS-SMGLLDRSVWCYESGLEI 187 (584)
Q Consensus 158 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~ 187 (584)
....+.+..|+ -+++.++|....+++++.
T Consensus 197 -GLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 197 -ATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp -HHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444444444 579999999999988776
No 320
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=49.11 E-value=69 Score=24.06 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=37.6
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 418 LYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 418 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
+..+|+-++-.+.+...+. +.+..+..+..+|.+|.+.|+..+|.+++.+|-+.
T Consensus 101 lv~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3456665555444444322 12223678899999999999999999999998764
No 321
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=48.82 E-value=58 Score=21.82 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH-HHHHHHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEK-ERLAELLKE 546 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~-~~l~~~~~~ 546 (584)
.....-|.-+.+.+++.+|...|+++..+ .++|..-.+. +.++.+-.+
T Consensus 54 r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 54 RSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHHHH
Confidence 34455566778999999999999999976 4577776666 666666443
No 322
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=46.66 E-value=1.3e+02 Score=25.43 Aligned_cols=184 Identities=17% Similarity=0.144 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---HHhCCCCCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHcC
Q 007930 201 ETCRYLAEAHIQAMQFDEAENLCKKILEIH---REHGHSASLEEAADRRLMALVYEAK-ADYESALEHLVLASMVMIANG 276 (584)
Q Consensus 201 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~a~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~ 276 (584)
.-+..++.+..+.++|++...+.+++.+.. +... . .-.+.++.+|... |....+...+....+.-...+
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt----~---EERnLLSvAyKNvIg~rR~swRiissieqke~~k~ 101 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELT----V---EERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRN 101 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCC----H---HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccC
Confidence 445567888889999999999999988753 2211 1 1133344444332 333333333322111100011
Q ss_pred CcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCC--cc-cHHHHHHHHHHHHHHccc----------HHHH
Q 007930 277 QENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKATRGED--HL-SVASIFIRLADLYYRIGK----------LRES 343 (584)
Q Consensus 277 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~-~~~~~~~~la~~~~~~g~----------~~~A 343 (584)
+. .. ..+..-|. ..=-.+-...+..++.+.....-+. .+ ..+..+-..|..|...-. .+.|
T Consensus 102 ~~-~~----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a 175 (260)
T 2npm_A 102 AE-DA----SKMCGKYR-SKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDA 175 (260)
T ss_dssp CH-HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cH-HH----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHH
Confidence 11 11 11111111 1111233344555555554432111 11 122233344555543322 3578
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHh
Q 007930 344 KSYCENALRVCAKPAPATAPEEIANGLTEISAIYEA-LNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 344 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~ 399 (584)
...|++|.++. ... .+.+|.......+.+..|+. .++.++|....++++.-.-.
T Consensus 176 ~~aY~~A~~iA-~~L-~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 230 (260)
T 2npm_A 176 LKAYKDATVVA-KDL-EPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIE 230 (260)
T ss_dssp HHHHHHHHHHH-TTS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HhC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 88999999999 543 55556555555566665554 79999999988888765543
No 323
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=46.03 E-value=50 Score=21.43 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 454 NQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
..+|..+...|++++|..+|-+|+.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45788888999999999999999987
No 324
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=45.52 E-value=84 Score=25.51 Aligned_cols=63 Identities=13% Similarity=-0.046 Sum_probs=42.9
Q ss_pred chhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHH
Q 007930 110 QELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDR 176 (584)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 176 (584)
+..+.+..++.+|..++..++|.+|.+.+..|+..++... ......++..+--+-.-+|++..
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~----~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS----QKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHHHHTTCEEC
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH----HHHHHHHHHHHHHHHHHcCCCCC
Confidence 4566788899999999999999999999999998864321 11111234444444455666543
No 325
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=45.04 E-value=42 Score=21.76 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Q 007930 327 FIRLADLYYRIGKLRESKSYCENALRVCAK 356 (584)
Q Consensus 327 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 356 (584)
-..+|..+...|++++|..+|-+|+..+.+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 356788899999999999999999998754
No 326
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=44.12 E-value=1.9e+02 Score=27.23 Aligned_cols=68 Identities=13% Similarity=-0.020 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcC
Q 007930 217 DEAENLCKKILEIHREHGHSASLEEAADRRLMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLC 296 (584)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 296 (584)
.+|+++|+++++...+....+.+.....+..++..|...|+ +|.+|.+ ....|
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD------yy~~AA~---------------------k~~yG 501 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD------YYVNAAR---------------------KALNG 501 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH------HHHHHHH---------------------HHHTT
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH------HHHHHHH---------------------HHhcC
Confidence 45677777777777776666666666666666655444443 3333322 23357
Q ss_pred ChhHHHHHHHHHHHH
Q 007930 297 RFDEAIFSYQKGLTV 311 (584)
Q Consensus 297 ~~~~A~~~~~~al~~ 311 (584)
..++|...-.++-++
T Consensus 502 ~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 502 DLEQAKIDAEKAKEY 516 (526)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 777777776666554
No 327
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=42.99 E-value=32 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 007930 370 LTEISAIYEALNEHEEALKLLQKAMKLLED 399 (584)
Q Consensus 370 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 399 (584)
-..+|..+...|+++.|+.+|-+|+..++.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 346788899999999999999999988754
No 328
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=41.66 E-value=53 Score=30.70 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchHH-HHHHHHH
Q 007930 509 EDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRAR-NRKGKSL 558 (584)
Q Consensus 509 ~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~A~~~~l 558 (584)
++|+++|++|+...+++-..++++....+.+++..|.-.|++- +|.++++
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDyy~~AA~k~~ 499 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDYYVNAARKAL 499 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHHHHHHHHHHh
Confidence 4788888999998888888899999999999999999998853 4443433
No 329
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=41.12 E-value=53 Score=26.71 Aligned_cols=33 Identities=12% Similarity=0.000 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 007930 280 EVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVF 312 (584)
Q Consensus 280 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 312 (584)
+.+...+.+|.+++..++|.+|.+.+..|+..+
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~ 44 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHC 44 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHC
Confidence 445666778888888888888888888887763
No 330
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.79 E-value=1.1e+02 Score=23.77 Aligned_cols=72 Identities=11% Similarity=0.232 Sum_probs=48.9
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH---HHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Q 007930 328 IRLADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTE---ISAIYEALNEHEEALKLLQKAMKLLEDTPG 402 (584)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 402 (584)
+.-+..++..|+|=+|-+.++..-..... ..+.......+.. .|..+...|+..-|..++.+++........
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~---~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~ 110 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGR---GNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN 110 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCS---SSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 44566677779999999888887654321 1012333344444 455667789999999999999998876533
No 331
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=39.93 E-value=2.2e+02 Score=25.92 Aligned_cols=118 Identities=15% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHHHHH---------------hCCCCcccHHHHHHHHHHH
Q 007930 365 EIANGLTEISAIYEALN------------EHEEALKLLQKAMKLLE---------------DTPGYHSTIAGIEAQMGVM 417 (584)
Q Consensus 365 ~~~~~~~~la~~~~~~g------------~~~~A~~~~~~a~~~~~---------------~~~~~~~~~~~~~~~l~~~ 417 (584)
+.+.+++++|.++...+ ..+.|..+|++|--++. ...+-......++..+...
T Consensus 112 E~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~~~~~~~~~~~~~~Dls~~~l~~L~~l~LA 191 (376)
T 3r9m_A 112 ELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVIQCQA 191 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTGGGCSSCCCTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCHHHHHHHHHHHHH
Q ss_pred HHHhccHHHHHH-----------------HHHHHHHHHHHcCCCCCchH------------HHHHHHHHHHHHhhCCHHH
Q 007930 418 LYVVGRYGEARS-----------------SFESAVVKLRASGESKSAFF------------GIVLNQMGLACLQLYRINE 468 (584)
Q Consensus 418 ~~~~g~~~~A~~-----------------~~~~a~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~ 468 (584)
..+.=-+.+|+. +|+++...+..........+ +.+++..|..+...+++.+
T Consensus 192 QAQE~~~~Kai~~~~k~~liAKLa~q~~~~Y~~a~~~l~~~~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~~~k~Ge 271 (376)
T 3r9m_A 192 EAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGE 271 (376)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Q ss_pred HHHHHHHHHHHHHH
Q 007930 469 ATELFEEARGVLEQ 482 (584)
Q Consensus 469 A~~~~~~a~~~~~~ 482 (584)
|+..++.|.+...+
T Consensus 272 aIa~L~~A~~~l~~ 285 (376)
T 3r9m_A 272 AIRSLQEAEKLYAK 285 (376)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 332
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=39.63 E-value=52 Score=31.00 Aligned_cols=34 Identities=9% Similarity=-0.182 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
......++..++++|+..|++++|..+.++++..
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 4456678888999999999999999999999875
No 333
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=38.02 E-value=58 Score=30.79 Aligned_cols=34 Identities=18% Similarity=-0.033 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
......++..+|++|+..|++++|..+.++++..
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4456678888999999999999999999999875
No 334
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=36.99 E-value=1e+02 Score=21.21 Aligned_cols=67 Identities=12% Similarity=-0.062 Sum_probs=42.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q 007930 247 LMALVYEAKADYESALEHLVLASMVMIANGQENEVAAIDVSIGNIYMSLCRFDEAIFSYQKGLTVFKAT 315 (584)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 315 (584)
..|..++..|+|-+|-+.++..-..............+....|......|+. |...+.+++......
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 3456677779999999988865442210000112233344455556678888 999999999876654
No 335
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=36.67 E-value=2.5e+02 Score=25.73 Aligned_cols=54 Identities=6% Similarity=0.089 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 007930 426 EARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVLEQ 482 (584)
Q Consensus 426 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 482 (584)
.++.+|++++...+....+.+. .-|..+|-.+.+.+++.+|+..+.++-.....
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 4567999999988887665543 45677888999999999999999999887544
No 336
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.78 E-value=1.9e+02 Score=23.80 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Q 007930 134 AVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQA 213 (584)
Q Consensus 134 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 213 (584)
=..++++++..+.......+....+.+|...+.. .+++..+|.-.... -. ....+..|...|..+...
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~---~I---G~~~AlfYe~wA~~lE~~ 163 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHH---HI---GQESSIFYEEYANYFESR 163 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHT---TC---STTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHC---Cc---chhHHHHHHHHHHHHHHc
Confidence 3567777777765433222222222444444432 24566666555433 11 234567788889999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 007930 214 MQFDEAENLCKKILEIH 230 (584)
Q Consensus 214 g~~~~A~~~~~~al~~~ 230 (584)
|++.+|..+|+..++..
T Consensus 164 g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 164 GLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999998753
No 337
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=33.65 E-value=56 Score=24.84 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDI 533 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~ 533 (584)
..+...|.+|...|+.+.|.-+|-+...++-..+.. ||+.
T Consensus 41 ~~llr~A~~y~~egd~e~AYily~R~~~L~~e~Ipk-Hpdy 80 (146)
T 2xze_A 41 VEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPK-HRDY 80 (146)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGG-STTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHccc-Cccc
Confidence 445667899999999999999999999998654442 5554
No 338
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=33.53 E-value=59 Score=30.66 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=30.8
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+.....++..+|++|..+|++++|..+.++++..
T Consensus 185 gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 185 GRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 35667778899999999999999999999999875
No 339
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=33.25 E-value=1.4e+02 Score=22.56 Aligned_cols=28 Identities=21% Similarity=-0.038 Sum_probs=18.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 007930 499 AATYDALGRVEDAIEILEYILKVREEKL 526 (584)
Q Consensus 499 a~~~~~~g~~~~A~~~~~~a~~~~~~~~ 526 (584)
|......|+++++-..+.+|..+...+.
T Consensus 40 A~~aie~~d~~~k~~~i~KA~~Ii~eL~ 67 (145)
T 1vh6_A 40 AAQAIENDDMERKNENLIKAQNIIQELN 67 (145)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4444566778887788888877765543
No 340
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=32.35 E-value=2.1e+02 Score=23.60 Aligned_cols=180 Identities=9% Similarity=-0.031 Sum_probs=98.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHhcCCCCCChHH
Q 007930 287 SIGNIYMSLCRFDEAIFSYQKGLTVFKATRGEDHLSVASIFIRLADLYYR-IGKLRESKSYCENALRVCAKPAPATAPEE 365 (584)
Q Consensus 287 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 365 (584)
.++.+..+.++|++...+.+++.+.+.... ......-.+.++.+|-. .|....+...+...-... + +. ..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~---~eLt~EERnLLSvAYKNvig~rR~swRiissiEqke-k---~~-~~- 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFEN---SEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ-L---NN-DE- 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-C---SC-HH-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccC---CCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-c---CC-HH-
Confidence 577888889999999999998887211111 12233333444444432 233333443333322111 1 11 11
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHHHHHHH-----HhccHHHHHHHHHHHHHHHH
Q 007930 366 IANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYH-STIAGIEAQMGVMLY-----VVGRYGEARSSFESAVVKLR 439 (584)
Q Consensus 366 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~~ 439 (584)
...+..-|.. .--.+=...+...+.+.....-.. ......+...|+.|. ..|+.+.|...|+.|.++..
T Consensus 82 ----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~ 156 (227)
T 2o8p_A 82 ----LVKICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLC 156 (227)
T ss_dssp ----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 1111222211 112233445666666666553322 122333445555553 34668899999999999987
Q ss_pred H-cCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 007930 440 A-SGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGVL 480 (584)
Q Consensus 440 ~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 480 (584)
. +.+.+|..++.+++.-...|.-+++.++|..+.++|..+.
T Consensus 157 ~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 157 EHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5 4444444455555544455556799999999999998764
No 341
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=31.84 E-value=3.8e+02 Score=26.39 Aligned_cols=193 Identities=10% Similarity=-0.054 Sum_probs=109.4
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCCcccHHHH
Q 007930 331 ADLYYRIGKLRESKSYCENALRVCAKPAPATAPEEIANGLTEISAIYEALNEHEEALKLLQKAMKLLEDTPGYHSTIAGI 410 (584)
Q Consensus 331 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 410 (584)
+.......+.+.|...+....... .-+..........++.-....+...++...+.+.. ... .+ .....
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~---~~~-~~-~~~~e- 289 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQ-----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI---MRS-QS-TSLIE- 289 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH---HTC-CC-HHHHH-
T ss_pred HHHHHHhcCHHHHHHHHHhhhhcc-----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc---ccC-CC-hHHHH-
Confidence 333444557788888877665432 11333444455555555555553556666666532 111 11 11112
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH-------HHHH
Q 007930 411 EAQMGVMLYVVGRYGEARSSFESAVVKLRASGESKSAFFGIVLNQMGLACLQLYRINEATELFEEARGV-------LEQE 483 (584)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~~~~ 483 (584)
.++......|+++.|...|...-. .........+.+|.++...|+.++|..+|+++..- ..+.
T Consensus 290 --~~~r~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~ 359 (618)
T 1qsa_A 290 --RRVRMALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQR 359 (618)
T ss_dssp --HHHHHHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred --HHHHHHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 223334567899998888765432 12224567788899998999999999988887641 1111
Q ss_pred hC-CC-------CC---ch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhchH
Q 007930 484 CG-SC-------HL---DT--LGVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDEKERLAELLKETGRA 550 (584)
Q Consensus 484 ~~-~~-------~~---~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (584)
.| +. .+ .. .......+..+...|....|...+...... .++ .....++.+....|.+
T Consensus 360 Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-------~~~---~~~~~la~~a~~~~~~ 429 (618)
T 1qsa_A 360 IGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-------KSK---TEQAQLARYAFNNQWW 429 (618)
T ss_dssp TTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CCH---HHHHHHHHHHHHTTCH
T ss_pred cCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-------CCH---HHHHHHHHHHHHCCCh
Confidence 22 10 00 00 112345566788889999998877766542 122 2334567777777777
Q ss_pred HHHH
Q 007930 551 RNRK 554 (584)
Q Consensus 551 ~~A~ 554 (584)
..++
T Consensus 430 ~~~v 433 (618)
T 1qsa_A 430 DLSV 433 (618)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7666
No 342
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=31.18 E-value=66 Score=30.40 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=30.8
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.++...-++..+|++|.-+|++++|..+.++++..
T Consensus 191 gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 191 GKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp TSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 35667778999999999999999999999999875
No 343
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=29.53 E-value=3.2e+02 Score=24.69 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHHH
Q 007930 158 FSGYMQLGDTCSSMG---------LLDRSVWCYESGLEIQI 189 (584)
Q Consensus 158 ~~~~~~l~~~~~~~g---------~~~~A~~~~~~al~~~~ 189 (584)
+.+++++|.++...+ ..+.|..+|++|--.+.
T Consensus 117 a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~ 157 (363)
T 3rau_A 117 ACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFA 157 (363)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 356778887776554 35667778887766553
No 344
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=29.37 E-value=66 Score=30.58 Aligned_cols=34 Identities=6% Similarity=-0.061 Sum_probs=29.3
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARGV 479 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 479 (584)
......++..+|++|+..|++++|..+.++++..
T Consensus 198 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 198 YINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3456678888999999999999999999999874
No 345
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=29.36 E-value=1.7e+02 Score=21.60 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=35.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHHHHh
Q 007930 497 NLAATYDALGRVEDAIEILEYILKVREEKLGTANPDI-DDEKERLAELLKET 547 (584)
Q Consensus 497 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~ 547 (584)
..+......|++++.-....++..+...+...-+++. .+.-.+|..+|.-.
T Consensus 41 ~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~ 92 (131)
T 3iqc_A 41 SQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQ 92 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHH
Confidence 3444556778999999999999998877666555554 35555666666543
No 346
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=29.15 E-value=2.9e+02 Score=24.07 Aligned_cols=225 Identities=10% Similarity=0.010 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC---chhHHHHHHHHHHHHHHhcCChh-----hHHHHHHHHHHHHHhccCCchhhhHHH
Q 007930 88 PNKALDYAIRASKSFERFSGSG---QELELVMSLHMLAAIYCSLGRFE-----EAVPVLERSIEVVDIGKGSDRALAKFS 159 (584)
Q Consensus 88 ~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (584)
++.-...+..+-+.+...+... .-|....+...++.-+....+.+ .....|+-+.+..........+...+.
T Consensus 21 ~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~r~~~~~~~~d~~~~~~~~kif~fv~~~i~~L~~~~~~elalr 100 (298)
T 2r17_C 21 PDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLR 100 (298)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 6666666666655554322111 12444555556666655544432 112333333332222211222444445
Q ss_pred HHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHhC
Q 007930 160 GYMQLGDTCSSMGL---LDRSVWCYESGLEIQIEALGDSDPRVAETCRYLAEAHIQAMQFD--EAENLCKKILEIHREHG 234 (584)
Q Consensus 160 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~ 234 (584)
.+..-|.+--..|- -+-|-++|.+|+.++++...+. .....+...+...+.....+. .-..+..++-....+..
T Consensus 101 L~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdS-k~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askLL 179 (298)
T 2r17_C 101 LFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDS-KAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLL 179 (298)
T ss_dssp HHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhcc
Confidence 56666666555555 5678889999999998854433 334455555555555554432 22222223322223333
Q ss_pred CCCCHHHHHHHHHHHHHHHH----------hccHHHHHHHHHHHHHHHHHcCCcchHHHHHH---HHHHHHHHcCChhHH
Q 007930 235 HSASLEEAADRRLMALVYEA----------KADYESALEHLVLASMVMIANGQENEVAAIDV---SIGNIYMSLCRFDEA 301 (584)
Q Consensus 235 ~~~~~~~a~~~~~l~~~~~~----------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---~la~~~~~~g~~~~A 301 (584)
..++...+...-+.+++. ..+-+..++.++++++++...-+.......+. +.-..|+..|+-.-.
T Consensus 180 --KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d~~~~v~LfveILn~ylyff~~g~~~Vt 257 (298)
T 2r17_C 180 --KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVT 257 (298)
T ss_dssp --SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHTTTCTTSC
T ss_pred --CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhhhhCCCCccc
Confidence 345666667777777764 24778999999999998887655443333332 333445566665555
Q ss_pred HHHHHHHHHHHHHh
Q 007930 302 IFSYQKGLTVFKAT 315 (584)
Q Consensus 302 ~~~~~~al~~~~~~ 315 (584)
.++.+..+++.++.
T Consensus 258 ~~~in~LI~lI~~~ 271 (298)
T 2r17_C 258 IQVLNQLIQKIRED 271 (298)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666553
No 347
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=28.33 E-value=79 Score=29.85 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 007930 112 LELVMSLHMLAAIYCSLGRFEEAVPVLERSIE 143 (584)
Q Consensus 112 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 143 (584)
.....++..+|++|+..++|++|..+.++++.
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45667888999999999999999999998875
No 348
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.14 E-value=84 Score=29.85 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 007930 111 ELELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV 144 (584)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 144 (584)
......++..+|++|+..|+|++|....++++..
T Consensus 193 r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 193 LFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3446778889999999999999999999998864
No 349
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=26.64 E-value=1e+02 Score=29.45 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 007930 112 LELVMSLHMLAAIYCSLGRFEEAVPVLERSIEV 144 (584)
Q Consensus 112 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 144 (584)
.....++..+|++|+..|+|++|..+.++++..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456678889999999999999999999998864
No 350
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=26.17 E-value=4e+02 Score=24.74 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=24.8
Q ss_pred hhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007930 153 RALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLE 186 (584)
Q Consensus 153 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 186 (584)
.|......+..|+..+...|+|.+|--.+..+..
T Consensus 6 ~pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 6 TPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445578889999999999999888765444
No 351
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=25.93 E-value=14 Score=31.13 Aligned_cols=45 Identities=16% Similarity=-0.031 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcCCCchhHH
Q 007930 69 DLGPFLLKLARETISSGDNPNKALDYAIRASKSFERFSGSGQELEL 114 (584)
Q Consensus 69 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 114 (584)
..+..++..|..+-..|+ |++|+.+|.+|++.+-......+++..
T Consensus 21 ~~Ai~lv~~AVe~D~~g~-y~eAl~lY~eaIe~Ll~alk~e~d~~~ 65 (257)
T 2ymb_A 21 TAAATVLKRAVELDSESR-YPQALVCYQEGIDLLLQVLKGTKDNTK 65 (257)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 345557888888888999 999999999999988776544444433
No 352
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=25.01 E-value=4.2e+02 Score=24.60 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH------HhCC-------CCCc------------------h----HHH
Q 007930 450 GIVLNQMGLACLQLYRINEATELFEEARGVLEQ------ECGS-------CHLD------------------T----LGV 494 (584)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~-------~~~~------------------~----~~~ 494 (584)
...+..|+..+...|++.||--++..+..+..+ ...- -.|+ . ...
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~l 90 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMEL 90 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHH
Confidence 456778899999999999999888755443222 1100 0010 0 113
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 007930 495 YSNLAATYDALGRVEDAIEILEYILKVREEK 525 (584)
Q Consensus 495 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 525 (584)
+...+..+.+.+.|+.|+..++..+..++..
T Consensus 91 l~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~ 121 (428)
T 2wm9_A 91 LEQCADGLWKAERYELIADIYKLIIPIYEKR 121 (428)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHTTTHHHHHHT
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 4444556667778888999998888887764
No 353
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=24.76 E-value=1.6e+02 Score=28.00 Aligned_cols=33 Identities=6% Similarity=0.029 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 007930 405 STIAGIEAQMGVMLYVVGRYGEARSSFESAVVK 437 (584)
Q Consensus 405 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 437 (584)
.....++..+|++|+..|++++|..+.++++..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455667778999999999999999999999864
No 354
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=24.34 E-value=1.4e+02 Score=28.17 Aligned_cols=33 Identities=27% Similarity=0.134 Sum_probs=28.5
Q ss_pred CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 007930 446 SAFFGIVLNQMGLACLQLYRINEATELFEEARG 478 (584)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 478 (584)
......++..+|++|+..+++++|..+.++++.
T Consensus 187 r~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 187 KPNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345667888999999999999999999999885
No 355
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=23.71 E-value=76 Score=30.15 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=30.5
Q ss_pred CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 007930 487 CHLDTLGVYSNLAATYDALGRVEDAIEILEYILKV 521 (584)
Q Consensus 487 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 521 (584)
.+.....++..+|++|.-.|++++|..+.++++..
T Consensus 197 gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 197 GYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 35666778899999999999999999999999874
No 356
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=23.51 E-value=2.8e+02 Score=22.09 Aligned_cols=113 Identities=14% Similarity=-0.009 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhcC-----------------------------CC--chhHHHHHHH
Q 007930 71 GPFLLKLARETISSGDNPNKALDYAIRASKSFERFSG-----------------------------SG--QELELVMSLH 119 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~-----------------------------~~--~~~~~~~~~~ 119 (584)
+-.-+.+++..+..|+ .+.|...+.+|-..+..... .+ ..|. -....
T Consensus 35 A~~DI~~AR~aL~~G~-~~~Ak~lL~~A~~~L~~a~~d~~~f~ka~~k~~~~~~~~iPI~~~l~v~edf~~tpe-K~aAI 112 (191)
T 3dza_A 35 AMRDIQFARLALFHGQ-PDSAKKLTDDAAALLAADDASWAKFVKTDAKAKMIADRYVIINASIALSEDYVATPE-KESAI 112 (191)
T ss_dssp HHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTSCHHHHHTTBCTTCCCCSSSSCEEEEEEEEEEECCCCCCHH-HHHHH
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHhhchHHHHhhcccCCCCCCceEEEcceeeeeccccCChH-HHHHH
Confidence 4445778899999999 99999999999988876210 01 2233 34555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007930 120 MLAAIYCSLGRFEEAVPVLERSIEVVDIGKGSDRALAKFSGYMQLGDTCSSMGLLDRSVWCYESGLE 186 (584)
Q Consensus 120 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 186 (584)
.-++-.++.|+...|.+.++-+=.-.. ..-..-|..........+..+...|+|.+|-..+..+.+
T Consensus 113 ~~AN~~Lk~Gd~~~A~~~LklAgvdv~-~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 113 QSANEKLAKGDQKGAIDTLRLAGIGVI-ENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTTCEEE-EEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCCchh-hhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 678999999999999988876521000 000112223334467788899999999999988887754
No 357
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=20.66 E-value=4.9e+02 Score=23.76 Aligned_cols=120 Identities=9% Similarity=-0.002 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHhhcC-------CCchhHHHHHHHHHHHHHHhcC---------
Q 007930 71 GPFLLKLARETISSGD-----NPNKALDYAIRASKSFERFSG-------SGQELELVMSLHMLAAIYCSLG--------- 129 (584)
Q Consensus 71 ~~~l~~~a~~~~~~g~-----~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g--------- 129 (584)
+-+++++|..+.+.|. ....|..+|++|--++.-+.+ .+-++....++..+.....+.-
T Consensus 123 a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~ 202 (392)
T 1zb1_A 123 SCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVLKLLNDQ 202 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456666555533321 278999999999888775532 1222444444443322221100
Q ss_pred --Ch---------hhHHHHHHHHHHHHHhccCC-----chhh----------hHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007930 130 --RF---------EEAVPVLERSIEVVDIGKGS-----DRAL----------AKFSGYMQLGDTCSSMGLLDRSVWCYES 183 (584)
Q Consensus 130 --~~---------~~A~~~~~~al~~~~~~~~~-----~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 183 (584)
.. .++..+|+++.+........ .... ....+++..|......+++-+|+..++.
T Consensus 203 ~~~~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~ 282 (392)
T 1zb1_A 203 ISSKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDF 282 (392)
T ss_dssp TGGGCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 11 13446778887776544211 1111 1112344455556666677777777777
Q ss_pred HHHHHHH
Q 007930 184 GLEIQIE 190 (584)
Q Consensus 184 al~~~~~ 190 (584)
+.+....
T Consensus 283 A~~~l~~ 289 (392)
T 1zb1_A 283 SMQQLIS 289 (392)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
No 358
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=20.10 E-value=2.9e+02 Score=20.88 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 007930 493 GVYSNLAATYDALGRVEDAIEILEYILKVREEKLGTANPDIDDE 536 (584)
Q Consensus 493 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~p~~~~~ 536 (584)
..++..|.+|...|+.+.|.-+|-+.+.++..+ +.||+....
T Consensus 43 ~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~~ 84 (144)
T 2a9u_A 43 LKIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQQ 84 (144)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhhh
Confidence 344667889999999999999999999998544 348877543
Done!