Query 007931
Match_columns 584
No_of_seqs 423 out of 3331
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 17:14:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 1E-124 3E-129 962.8 53.9 528 33-581 34-562 (674)
2 KOG0923 mRNA splicing factor A 100.0 2E-122 4E-127 934.0 45.5 524 39-581 254-778 (902)
3 KOG0924 mRNA splicing factor A 100.0 4E-119 8E-124 911.2 44.9 522 40-581 346-868 (1042)
4 KOG0925 mRNA splicing factor A 100.0 4E-116 9E-121 860.5 42.8 530 26-581 24-559 (699)
5 COG1643 HrpA HrpA-like helicas 100.0 4E-104 9E-109 859.7 52.2 527 29-581 29-574 (845)
6 PRK11131 ATP-dependent RNA hel 100.0 8E-100 2E-104 853.2 53.9 508 44-581 68-592 (1294)
7 KOG0920 ATP-dependent RNA heli 100.0 2E-101 5E-106 833.1 38.8 528 34-582 157-724 (924)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7E-98 2E-102 840.9 54.4 507 44-580 61-582 (1283)
9 KOG0926 DEAH-box RNA helicase 100.0 4.9E-98 1E-102 768.7 42.4 524 40-582 246-908 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 5.7E-85 1.2E-89 722.4 48.0 445 49-522 1-447 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 2.9E-82 6.4E-87 702.7 48.4 444 48-519 3-449 (812)
12 PHA02653 RNA helicase NPH-II; 100.0 3.1E-57 6.6E-62 490.3 36.1 395 54-502 168-595 (675)
13 KOG0921 Dosage compensation co 100.0 2.1E-58 4.6E-63 480.4 19.8 521 35-578 363-949 (1282)
14 PRK01172 ski2-like helicase; P 100.0 8E-46 1.7E-50 413.1 37.6 455 28-514 2-505 (674)
15 PRK02362 ski2-like helicase; P 100.0 5.1E-45 1.1E-49 409.4 42.2 463 28-514 2-529 (737)
16 PRK00254 ski2-like helicase; P 100.0 6.4E-42 1.4E-46 383.4 38.0 458 28-516 2-523 (720)
17 KOG0330 ATP-dependent RNA heli 100.0 1.1E-43 2.4E-48 342.0 18.2 342 20-412 54-410 (476)
18 KOG0331 ATP-dependent RNA heli 100.0 1.5E-42 3.3E-47 356.2 24.3 343 25-413 89-452 (519)
19 PRK11776 ATP-dependent RNA hel 100.0 5.3E-42 1.2E-46 366.8 27.2 338 26-412 3-352 (460)
20 PTZ00110 helicase; Provisional 100.0 2.1E-41 4.7E-46 365.9 26.2 341 25-412 128-487 (545)
21 PRK10590 ATP-dependent RNA hel 100.0 5.2E-41 1.1E-45 357.7 26.4 335 28-411 2-354 (456)
22 PRK11192 ATP-dependent RNA hel 100.0 1.2E-40 2.6E-45 354.2 27.6 337 28-413 2-356 (434)
23 COG0513 SrmB Superfamily II DN 100.0 1.2E-40 2.7E-45 356.6 26.7 336 26-409 28-380 (513)
24 PRK04837 ATP-dependent RNA hel 100.0 8.7E-41 1.9E-45 353.6 24.7 335 27-411 8-364 (423)
25 PTZ00424 helicase 45; Provisio 100.0 2.1E-40 4.5E-45 349.6 25.6 340 26-413 27-378 (401)
26 COG1204 Superfamily II helicas 100.0 2.7E-39 5.9E-44 355.2 33.7 421 53-502 35-526 (766)
27 PLN00206 DEAD-box ATP-dependen 100.0 3.5E-40 7.6E-45 355.5 24.9 341 25-412 119-478 (518)
28 PRK04537 ATP-dependent RNA hel 100.0 7.2E-40 1.6E-44 355.2 25.5 335 27-411 9-366 (572)
29 PRK01297 ATP-dependent RNA hel 100.0 1.2E-39 2.6E-44 349.6 26.0 336 26-411 86-444 (475)
30 PRK11634 ATP-dependent RNA hel 100.0 2.3E-39 4.9E-44 353.1 27.9 335 27-411 6-354 (629)
31 COG1202 Superfamily II helicas 100.0 5.9E-39 1.3E-43 322.5 24.1 444 29-526 196-689 (830)
32 KOG0328 Predicted ATP-dependen 100.0 2.7E-39 5.8E-44 299.0 19.8 348 20-413 20-377 (400)
33 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-39 3.7E-44 324.9 19.6 336 28-411 70-424 (758)
34 KOG0338 ATP-dependent RNA heli 100.0 5.6E-40 1.2E-44 325.6 15.2 338 27-411 181-535 (691)
35 TIGR03817 DECH_helic helicase/ 100.0 7.5E-38 1.6E-42 347.8 29.0 335 34-407 21-384 (742)
36 KOG0333 U5 snRNP-like RNA heli 100.0 4E-38 8.6E-43 313.7 20.3 335 25-410 243-625 (673)
37 KOG0342 ATP-dependent RNA heli 100.0 1.7E-37 3.8E-42 308.0 22.2 338 26-411 81-439 (543)
38 KOG0326 ATP-dependent RNA heli 100.0 2.1E-38 4.4E-43 297.8 13.8 358 5-411 61-431 (459)
39 KOG0345 ATP-dependent RNA heli 100.0 2.7E-37 5.9E-42 304.5 22.3 354 28-428 5-385 (567)
40 TIGR00614 recQ_fam ATP-depende 100.0 1.5E-36 3.2E-41 324.5 29.9 307 52-413 13-337 (470)
41 PLN03137 ATP-dependent DNA hel 100.0 7.1E-37 1.5E-41 337.5 27.7 328 30-412 440-790 (1195)
42 PRK11057 ATP-dependent DNA hel 100.0 2.8E-36 6E-41 330.6 28.1 316 40-412 14-346 (607)
43 KOG0952 DNA/RNA helicase MER3/ 100.0 2.4E-35 5.1E-40 314.7 27.8 470 59-555 120-683 (1230)
44 PRK13767 ATP-dependent helicas 100.0 7.4E-35 1.6E-39 330.2 29.6 340 36-407 19-398 (876)
45 TIGR01389 recQ ATP-dependent D 100.0 3.1E-35 6.7E-40 323.3 24.1 306 51-412 14-334 (591)
46 KOG0348 ATP-dependent RNA heli 100.0 3.9E-35 8.5E-40 292.8 20.8 386 24-430 133-576 (708)
47 KOG0340 ATP-dependent RNA heli 100.0 7.2E-35 1.6E-39 278.0 21.2 344 27-412 7-364 (442)
48 COG1201 Lhr Lhr-like helicases 100.0 9.3E-34 2E-38 307.2 29.0 385 36-466 9-438 (814)
49 KOG0347 RNA helicase [RNA proc 100.0 7.7E-37 1.7E-41 305.9 4.3 352 25-412 179-573 (731)
50 KOG0335 ATP-dependent RNA heli 100.0 6.9E-35 1.5E-39 294.6 16.8 339 28-407 75-442 (482)
51 COG1111 MPH1 ERCC4-like helica 100.0 6.5E-34 1.4E-38 284.9 20.0 333 49-409 14-481 (542)
52 KOG0339 ATP-dependent RNA heli 100.0 6.3E-34 1.4E-38 282.3 19.6 353 14-412 211-578 (731)
53 KOG0332 ATP-dependent RNA heli 100.0 1.2E-33 2.7E-38 271.1 20.0 346 21-409 84-443 (477)
54 KOG0336 ATP-dependent RNA heli 100.0 3.4E-34 7.3E-39 277.4 16.3 340 25-413 217-576 (629)
55 PRK09751 putative ATP-dependen 100.0 2.4E-33 5.1E-38 322.3 24.5 294 70-398 1-372 (1490)
56 TIGR00580 mfd transcription-re 100.0 1.1E-32 2.3E-37 309.3 26.1 317 37-409 439-770 (926)
57 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.9E-32 6.3E-37 297.3 25.2 343 49-440 14-422 (844)
58 KOG0354 DEAD-box like helicase 100.0 5E-32 1.1E-36 286.8 22.8 337 47-408 59-528 (746)
59 COG0514 RecQ Superfamily II DN 100.0 2.9E-32 6.2E-37 285.7 20.4 309 53-412 20-340 (590)
60 PRK10917 ATP-dependent DNA hel 100.0 2.1E-31 4.6E-36 295.1 28.1 305 48-407 259-587 (681)
61 KOG0346 RNA helicase [RNA proc 100.0 5.9E-32 1.3E-36 264.5 20.7 335 27-411 19-412 (569)
62 TIGR00643 recG ATP-dependent D 100.0 2.9E-31 6.3E-36 292.2 27.2 305 51-406 236-563 (630)
63 PRK10689 transcription-repair 100.0 1.6E-31 3.5E-36 306.0 25.5 303 51-408 601-918 (1147)
64 KOG0327 Translation initiation 100.0 5.6E-32 1.2E-36 262.2 16.0 343 22-413 21-374 (397)
65 KOG0350 DEAD-box ATP-dependent 100.0 1.1E-31 2.3E-36 266.6 16.4 319 49-411 158-542 (620)
66 TIGR01587 cas3_core CRISPR-ass 100.0 2.4E-30 5.2E-35 268.7 23.3 299 67-409 1-336 (358)
67 KOG0951 RNA helicase BRR2, DEA 100.0 5.1E-30 1.1E-34 277.1 25.1 441 53-524 312-851 (1674)
68 KOG0341 DEAD-box protein abstr 100.0 7.1E-32 1.5E-36 259.7 8.2 347 18-411 162-530 (610)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 3.9E-29 8.4E-34 257.2 28.5 291 54-395 1-357 (357)
70 COG1205 Distinct helicase fami 100.0 6.9E-30 1.5E-34 285.0 23.1 326 47-409 67-422 (851)
71 KOG4284 DEAD box protein [Tran 100.0 5.2E-30 1.1E-34 260.9 16.1 339 25-409 23-379 (980)
72 KOG0334 RNA helicase [RNA proc 100.0 6.5E-30 1.4E-34 275.8 16.4 338 25-410 363-721 (997)
73 PRK13766 Hef nuclease; Provisi 100.0 1.9E-28 4.1E-33 278.7 27.1 333 47-409 12-479 (773)
74 PHA02558 uvsW UvsW helicase; P 100.0 2.1E-28 4.6E-33 263.0 25.2 310 49-401 113-443 (501)
75 KOG0344 ATP-dependent RNA heli 100.0 2.9E-29 6.2E-34 255.4 14.8 326 36-412 145-498 (593)
76 KOG0337 ATP-dependent RNA heli 100.0 6.2E-29 1.3E-33 242.3 11.9 338 26-410 20-369 (529)
77 KOG0947 Cytoplasmic exosomal R 100.0 1.4E-27 3E-32 252.7 19.5 325 47-409 294-723 (1248)
78 KOG0948 Nuclear exosomal RNA h 100.0 1.6E-28 3.5E-33 253.9 12.2 324 49-409 128-539 (1041)
79 COG4581 Superfamily II RNA hel 99.9 1.7E-26 3.6E-31 254.2 24.2 327 46-407 115-535 (1041)
80 PRK09401 reverse gyrase; Revie 99.9 2E-26 4.4E-31 264.8 21.9 277 48-366 78-412 (1176)
81 TIGR03714 secA2 accessory Sec 99.9 2.8E-25 6E-30 240.5 27.5 329 45-410 63-538 (762)
82 COG4098 comFA Superfamily II D 99.9 4.8E-25 1E-29 210.4 25.0 290 56-402 107-409 (441)
83 TIGR00603 rad25 DNA repair hel 99.9 2E-25 4.4E-30 241.6 24.0 320 48-412 253-610 (732)
84 KOG0352 ATP-dependent DNA heli 99.9 1.7E-26 3.7E-31 225.3 13.0 308 54-413 25-366 (641)
85 PRK09200 preprotein translocas 99.9 3.6E-25 7.7E-30 241.9 24.5 327 47-410 73-542 (790)
86 KOG0950 DNA polymerase theta/e 99.9 9.4E-26 2E-30 240.8 17.8 324 61-411 236-613 (1008)
87 PRK12898 secA preprotein trans 99.9 1.1E-24 2.3E-29 233.4 25.2 106 276-410 473-587 (656)
88 TIGR00595 priA primosomal prot 99.9 1.8E-25 4E-30 238.4 18.4 295 69-404 1-376 (505)
89 KOG0351 ATP-dependent DNA heli 99.9 7.9E-26 1.7E-30 250.6 16.0 312 52-413 266-596 (941)
90 PRK05580 primosome assembly pr 99.9 9.4E-25 2E-29 241.3 24.5 316 48-404 142-544 (679)
91 PRK14701 reverse gyrase; Provi 99.9 3.9E-25 8.6E-30 259.3 20.5 315 49-409 78-456 (1638)
92 PRK09694 helicase Cas3; Provis 99.9 1.4E-23 3.1E-28 233.5 30.4 316 50-397 286-662 (878)
93 TIGR00963 secA preprotein tran 99.9 3.6E-24 7.9E-29 230.4 22.8 326 47-409 51-517 (745)
94 TIGR01054 rgy reverse gyrase. 99.9 5.5E-24 1.2E-28 245.2 24.4 279 47-367 75-412 (1171)
95 COG1061 SSL2 DNA or RNA helica 99.9 3.2E-23 7E-28 218.6 23.5 308 45-397 31-376 (442)
96 PRK11448 hsdR type I restricti 99.9 5.4E-23 1.2E-27 235.3 24.8 333 50-407 413-813 (1123)
97 COG1200 RecG RecG-like helicas 99.9 1.5E-23 3.4E-28 219.4 18.5 313 42-409 252-591 (677)
98 KOG0353 ATP-dependent DNA heli 99.9 5.6E-23 1.2E-27 197.9 20.4 331 27-409 71-467 (695)
99 COG1197 Mfd Transcription-repa 99.9 6.2E-22 1.4E-26 218.4 23.2 288 67-409 617-913 (1139)
100 KOG0329 ATP-dependent RNA heli 99.9 1.3E-21 2.8E-26 179.4 11.8 305 26-413 41-359 (387)
101 PRK04914 ATP-dependent helicas 99.9 3.9E-20 8.4E-25 207.5 22.9 118 266-409 483-605 (956)
102 PRK13104 secA preprotein trans 99.8 1.1E-19 2.3E-24 198.7 23.6 289 45-352 75-509 (896)
103 PRK12906 secA preprotein trans 99.8 1.3E-19 2.8E-24 197.1 20.0 118 261-409 427-553 (796)
104 PRK12904 preprotein translocas 99.8 4.7E-19 1E-23 193.5 22.0 343 46-407 75-571 (830)
105 KOG0349 Putative DEAD-box RNA 99.8 1E-19 2.2E-24 178.3 12.9 289 95-407 287-613 (725)
106 COG1203 CRISPR-associated heli 99.8 1E-18 2.2E-23 195.3 20.3 310 50-407 195-548 (733)
107 KOG0949 Predicted helicase, DE 99.8 1.8E-18 3.9E-23 184.4 19.6 162 49-216 510-682 (1330)
108 COG1198 PriA Primosomal protei 99.8 8.1E-18 1.8E-22 182.4 19.3 326 48-403 196-597 (730)
109 PRK13107 preprotein translocas 99.8 2.4E-17 5.2E-22 179.8 22.6 81 259-352 434-514 (908)
110 KOG0921 Dosage compensation co 99.8 2.9E-21 6.2E-26 203.6 -8.3 448 42-502 398-875 (1282)
111 PF04408 HA2: Helicase associa 99.8 2.7E-18 5.8E-23 143.3 8.9 91 459-550 1-102 (102)
112 cd00268 DEADc DEAD-box helicas 99.7 2.5E-17 5.4E-22 156.9 14.7 177 29-207 1-185 (203)
113 COG4096 HsdR Type I site-speci 99.7 2.6E-16 5.6E-21 167.5 23.2 341 59-437 178-575 (875)
114 KOG0953 Mitochondrial RNA heli 99.7 1.7E-16 3.6E-21 160.9 18.4 276 64-409 190-477 (700)
115 PRK12899 secA preprotein trans 99.7 1.4E-15 3.1E-20 166.3 24.4 124 47-174 87-225 (970)
116 TIGR00348 hsdR type I site-spe 99.7 5.6E-16 1.2E-20 171.6 18.8 319 47-400 236-638 (667)
117 COG0556 UvrB Helicase subunit 99.7 3.9E-15 8.4E-20 150.8 22.9 124 260-407 432-555 (663)
118 PF00270 DEAD: DEAD/DEAH box h 99.7 1.1E-16 2.4E-21 147.6 11.0 156 53-212 2-167 (169)
119 KOG4150 Predicted ATP-dependen 99.7 1.4E-16 3.1E-21 161.2 11.4 318 49-403 285-634 (1034)
120 smart00847 HA2 Helicase associ 99.7 3.1E-16 6.8E-21 128.8 8.3 90 459-550 1-92 (92)
121 TIGR00631 uvrb excinuclease AB 99.6 1.5E-15 3.3E-20 166.3 15.2 114 274-409 440-553 (655)
122 KOG0951 RNA helicase BRR2, DEA 99.6 3.4E-15 7.4E-20 163.3 15.3 320 63-421 1157-1508(1674)
123 TIGR01407 dinG_rel DnaQ family 99.6 1.5E-13 3.3E-18 157.1 28.9 139 257-405 656-811 (850)
124 COG1110 Reverse gyrase [DNA re 99.6 1.2E-13 2.6E-18 149.7 26.1 275 48-366 80-419 (1187)
125 PLN03142 Probable chromatin-re 99.6 4.2E-14 9.1E-19 159.8 22.5 112 275-413 486-603 (1033)
126 cd00079 HELICc Helicase superf 99.6 6.3E-15 1.4E-19 129.6 10.3 104 275-405 27-131 (131)
127 PRK05298 excinuclease ABC subu 99.6 2.6E-14 5.7E-19 157.8 15.2 112 275-408 445-556 (652)
128 PRK12326 preprotein translocas 99.5 7.3E-13 1.6E-17 141.8 21.0 118 259-407 412-545 (764)
129 PF00271 Helicase_C: Helicase 99.5 1E-14 2.2E-19 115.8 3.5 71 309-397 7-77 (78)
130 PRK07246 bifunctional ATP-depe 99.5 1.8E-11 3.9E-16 138.3 30.8 134 257-405 630-780 (820)
131 PRK12900 secA preprotein trans 99.5 4.6E-13 9.9E-18 147.3 14.1 120 260-410 584-712 (1025)
132 KOG1123 RNA polymerase II tran 99.5 3.2E-13 7E-18 135.5 11.5 317 50-411 302-655 (776)
133 PRK13103 secA preprotein trans 99.5 3E-12 6.6E-17 140.4 19.6 127 46-174 76-212 (913)
134 cd00046 DEXDc DEAD-like helica 99.5 1.5E-12 3.2E-17 115.4 14.1 139 66-206 1-144 (144)
135 PF07652 Flavi_DEAD: Flaviviru 99.4 1.4E-12 2.9E-17 112.4 11.9 136 63-208 2-138 (148)
136 PRK12903 secA preprotein trans 99.4 1.7E-11 3.7E-16 133.3 22.5 117 260-407 412-537 (925)
137 TIGR02562 cas3_yersinia CRISPR 99.4 1.2E-11 2.6E-16 136.9 21.5 97 279-399 759-881 (1110)
138 smart00487 DEXDc DEAD-like hel 99.4 6.3E-12 1.4E-16 118.4 16.3 165 49-215 7-181 (201)
139 smart00490 HELICc helicase sup 99.4 6.4E-13 1.4E-17 106.3 4.9 71 309-397 11-81 (82)
140 PRK14873 primosome assembly pr 99.4 1.8E-11 4E-16 134.1 17.5 138 69-214 164-311 (665)
141 PRK08074 bifunctional ATP-depe 99.3 4.2E-10 9E-15 129.6 28.8 140 257-405 734-890 (928)
142 CHL00122 secA preprotein trans 99.3 1.3E-10 2.9E-15 127.1 21.3 125 46-174 70-206 (870)
143 PF04851 ResIII: Type III rest 99.3 2.6E-11 5.6E-16 113.1 13.8 147 49-207 2-183 (184)
144 KOG0385 Chromatin remodeling c 99.2 6.3E-10 1.4E-14 117.6 20.7 330 51-413 168-603 (971)
145 PRK12902 secA preprotein trans 99.2 3.6E-09 7.8E-14 115.9 23.7 128 45-174 78-215 (939)
146 PF02399 Herpes_ori_bp: Origin 99.2 3.8E-09 8.3E-14 114.6 22.2 308 63-412 47-391 (824)
147 TIGR03117 cas_csf4 CRISPR-asso 99.1 1E-07 2.2E-12 103.5 30.8 136 259-407 454-615 (636)
148 KOG0384 Chromodomain-helicase 99.1 3.4E-09 7.5E-14 117.4 17.4 352 49-437 369-836 (1373)
149 KOG0387 Transcription-coupled 99.0 1.3E-07 2.9E-12 100.9 23.5 115 275-412 545-661 (923)
150 COG4889 Predicted helicase [Ge 98.9 1.1E-09 2.5E-14 116.8 6.2 107 278-402 462-577 (1518)
151 KOG1000 Chromatin remodeling p 98.7 2.4E-06 5.2E-11 86.8 21.1 80 274-362 490-571 (689)
152 KOG0390 DNA repair protein, SN 98.7 3.9E-06 8.5E-11 91.8 23.6 107 283-412 601-710 (776)
153 KOG0392 SNF2 family DNA-depend 98.7 1.4E-06 3E-11 97.0 19.4 117 276-413 1340-1458(1549)
154 KOG0952 DNA/RNA helicase MER3/ 98.6 3.5E-08 7.5E-13 108.1 3.4 191 25-219 886-1107(1230)
155 COG0610 Type I site-specific r 98.5 4.9E-06 1.1E-10 95.9 19.8 133 66-206 274-413 (962)
156 PF00448 SRP54: SRP54-type pro 98.5 1.5E-06 3.2E-11 81.6 11.9 128 66-211 2-130 (196)
157 KOG1002 Nucleotide excision re 98.4 6.7E-06 1.5E-10 83.5 15.0 90 306-413 659-753 (791)
158 PRK12901 secA preprotein trans 98.4 4.2E-06 9.1E-11 93.4 14.3 119 258-407 612-739 (1112)
159 KOG0389 SNF2 family DNA-depend 98.3 4.9E-06 1.1E-10 89.1 12.8 115 275-413 776-892 (941)
160 COG1419 FlhF Flagellar GTP-bin 98.3 2.3E-05 5E-10 79.6 15.1 129 65-217 203-334 (407)
161 PF00176 SNF2_N: SNF2 family N 98.2 3.9E-06 8.4E-11 84.7 9.4 132 64-206 24-172 (299)
162 PF13401 AAA_22: AAA domain; P 98.2 1.3E-06 2.8E-11 76.5 4.0 115 63-204 2-124 (131)
163 TIGR02768 TraA_Ti Ti-type conj 98.2 0.00061 1.3E-08 77.0 26.1 123 48-203 350-474 (744)
164 PRK12723 flagellar biosynthesi 98.2 3.7E-05 8E-10 79.4 14.9 130 65-218 174-309 (388)
165 COG0653 SecA Preprotein transl 98.1 2.9E-05 6.4E-10 85.5 13.9 125 46-174 74-210 (822)
166 PF13604 AAA_30: AAA domain; P 98.1 1.2E-05 2.7E-10 75.6 9.2 122 52-206 3-131 (196)
167 PRK11889 flhF flagellar biosyn 98.1 6E-05 1.3E-09 76.7 14.4 130 66-217 242-376 (436)
168 PRK14722 flhF flagellar biosyn 98.1 3.8E-05 8.3E-10 78.6 12.7 126 63-212 135-263 (374)
169 PRK10536 hypothetical protein; 98.1 1.7E-05 3.6E-10 76.3 9.2 57 48-104 57-113 (262)
170 PRK13889 conjugal transfer rel 98.0 0.0022 4.7E-08 73.9 25.4 125 48-205 344-470 (988)
171 PRK14974 cell division protein 97.9 0.00012 2.6E-09 74.3 12.3 121 66-207 141-265 (336)
172 PRK05703 flhF flagellar biosyn 97.9 0.00024 5.2E-09 74.8 15.0 126 65-214 221-350 (424)
173 PRK12726 flagellar biosynthesi 97.9 0.00013 2.8E-09 74.1 12.1 132 63-216 204-337 (407)
174 PF06862 DUF1253: Protein of u 97.9 0.0011 2.3E-08 69.2 19.1 246 140-413 130-419 (442)
175 TIGR00596 rad1 DNA repair prot 97.9 0.00023 5.1E-09 80.1 15.0 66 141-207 7-73 (814)
176 cd00009 AAA The AAA+ (ATPases 97.8 0.00037 8E-09 61.6 13.0 47 55-102 7-55 (151)
177 COG1199 DinG Rad3-related DNA 97.8 0.00031 6.8E-09 79.1 15.2 157 258-426 462-638 (654)
178 TIGR01448 recD_rel helicase, p 97.8 0.00021 4.5E-09 80.5 13.4 125 47-205 320-452 (720)
179 PF02562 PhoH: PhoH-like prote 97.8 7.2E-05 1.5E-09 70.1 8.1 55 50-104 4-59 (205)
180 PRK11747 dinG ATP-dependent DN 97.8 7.9E-05 1.7E-09 83.7 9.9 136 256-405 516-671 (697)
181 PRK13826 Dtr system oriT relax 97.8 0.009 2E-07 69.3 26.4 125 48-205 379-505 (1102)
182 PF13245 AAA_19: Part of AAA d 97.7 0.00013 2.9E-09 56.9 7.1 57 58-115 3-62 (76)
183 PRK12727 flagellar biosynthesi 97.7 0.00041 8.9E-09 73.5 12.8 128 63-214 348-477 (559)
184 TIGR00604 rad3 DNA repair heli 97.7 0.0002 4.3E-09 81.0 11.2 193 198-399 443-663 (705)
185 PRK12724 flagellar biosynthesi 97.7 0.00089 1.9E-08 69.2 14.1 128 65-217 223-358 (432)
186 PRK06526 transposase; Provisio 97.7 0.00021 4.6E-09 69.9 9.2 30 60-89 93-122 (254)
187 PF09848 DUF2075: Uncharacteri 97.6 0.00029 6.3E-09 72.8 10.5 90 66-174 2-93 (352)
188 TIGR02760 TraI_TIGR conjugativ 97.6 0.025 5.4E-07 70.5 28.4 248 48-334 427-685 (1960)
189 KOG0386 Chromatin remodeling c 97.6 0.00017 3.7E-09 79.6 8.6 112 274-412 724-841 (1157)
190 PF07517 SecA_DEAD: SecA DEAD- 97.6 7.4E-05 1.6E-09 72.9 5.3 125 48-174 73-207 (266)
191 KOG4439 RNA polymerase II tran 97.6 0.0014 3E-08 70.0 14.4 90 309-413 770-862 (901)
192 TIGR01447 recD exodeoxyribonuc 97.6 0.00065 1.4E-08 74.4 12.6 137 53-205 148-295 (586)
193 PF13872 AAA_34: P-loop contai 97.6 0.00054 1.2E-08 67.2 10.6 139 65-206 62-220 (303)
194 PRK06731 flhF flagellar biosyn 97.6 0.0017 3.6E-08 63.9 14.0 129 64-214 74-204 (270)
195 smart00382 AAA ATPases associa 97.6 0.00057 1.2E-08 59.8 9.9 39 65-104 2-40 (148)
196 PRK14721 flhF flagellar biosyn 97.5 0.0013 2.7E-08 68.7 13.6 127 64-214 190-319 (420)
197 PRK14723 flhF flagellar biosyn 97.5 0.00089 1.9E-08 74.3 12.9 125 65-213 185-312 (767)
198 PRK08181 transposase; Validate 97.5 0.0011 2.4E-08 65.2 12.3 119 60-217 101-219 (269)
199 PRK10875 recD exonuclease V su 97.5 0.00094 2E-08 73.3 11.9 138 53-205 155-301 (615)
200 PF13173 AAA_14: AAA domain 97.4 0.0015 3.3E-08 56.9 10.6 27 64-90 1-27 (128)
201 PRK10416 signal recognition pa 97.4 0.0017 3.7E-08 65.7 12.1 128 65-211 114-249 (318)
202 TIGR03015 pepcterm_ATPase puta 97.4 0.0014 2.9E-08 65.1 11.0 28 62-89 39-67 (269)
203 PRK04296 thymidine kinase; Pro 97.4 0.002 4.3E-08 60.3 11.3 36 65-101 2-37 (190)
204 PRK06835 DNA replication prote 97.3 0.002 4.3E-08 65.5 11.5 37 64-101 182-218 (329)
205 PRK06995 flhF flagellar biosyn 97.3 0.0038 8.3E-08 66.2 13.7 126 64-213 255-383 (484)
206 PF05970 PIF1: PIF1-like helic 97.3 0.0014 3E-08 68.1 10.2 57 53-111 4-66 (364)
207 PF12340 DUF3638: Protein of u 97.3 0.0026 5.6E-08 60.3 11.0 110 42-155 15-144 (229)
208 KOG0989 Replication factor C, 97.3 0.001 2.2E-08 64.8 8.2 43 162-206 127-169 (346)
209 PF05729 NACHT: NACHT domain 97.3 0.0012 2.6E-08 60.0 8.6 127 66-218 1-142 (166)
210 PRK14956 DNA polymerase III su 97.3 0.0016 3.4E-08 68.7 10.4 44 160-207 117-160 (484)
211 KOG1803 DNA helicase [Replicat 97.2 0.00079 1.7E-08 71.0 7.4 62 51-114 186-248 (649)
212 TIGR00064 ftsY signal recognit 97.2 0.0039 8.4E-08 61.8 11.9 127 65-211 72-207 (272)
213 PRK07952 DNA replication prote 97.2 0.015 3.2E-07 56.5 15.4 115 66-217 100-215 (244)
214 PRK08116 hypothetical protein; 97.2 0.01 2.2E-07 58.8 14.6 36 65-101 114-149 (268)
215 PRK12377 putative replication 97.2 0.02 4.4E-07 55.7 16.3 37 64-101 100-136 (248)
216 TIGR01425 SRP54_euk signal rec 97.1 0.0039 8.4E-08 65.2 11.7 128 66-216 101-236 (429)
217 COG1484 DnaC DNA replication p 97.1 0.0073 1.6E-07 59.2 13.0 121 56-217 96-219 (254)
218 PRK07003 DNA polymerase III su 97.1 0.0043 9.3E-08 68.4 11.9 51 152-204 107-157 (830)
219 PF13307 Helicase_C_2: Helicas 97.1 0.00024 5.2E-09 65.0 2.0 116 275-400 8-140 (167)
220 PRK00771 signal recognition pa 97.1 0.0081 1.7E-07 63.3 13.5 121 66-208 96-219 (437)
221 TIGR03499 FlhF flagellar biosy 97.1 0.0025 5.5E-08 63.6 9.3 86 65-173 194-281 (282)
222 PRK10867 signal recognition pa 97.1 0.0055 1.2E-07 64.4 12.0 123 66-206 101-225 (433)
223 PF01695 IstB_IS21: IstB-like 97.0 0.0012 2.6E-08 61.0 6.2 121 59-218 41-161 (178)
224 PRK07994 DNA polymerase III su 97.0 0.003 6.6E-08 69.4 10.2 49 152-202 107-155 (647)
225 PRK09183 transposase/IS protei 97.0 0.0056 1.2E-07 60.2 11.1 39 62-101 99-137 (259)
226 PRK12323 DNA polymerase III su 97.0 0.0046 1E-07 67.2 11.0 51 152-204 112-162 (700)
227 PF13086 AAA_11: AAA domain; P 97.0 0.0023 4.9E-08 61.8 8.1 65 52-117 3-75 (236)
228 PRK08691 DNA polymerase III su 97.0 0.006 1.3E-07 67.0 12.0 44 158-203 113-156 (709)
229 KOG0391 SNF2 family DNA-depend 97.0 0.0035 7.6E-08 70.4 10.0 117 273-413 1273-1391(1958)
230 PRK14960 DNA polymerase III su 96.9 0.0062 1.3E-07 66.4 11.1 43 159-203 113-155 (702)
231 PRK08727 hypothetical protein; 96.9 0.006 1.3E-07 59.1 10.1 36 65-101 41-76 (233)
232 PRK08939 primosomal protein Dn 96.9 0.024 5.3E-07 57.1 14.7 114 64-216 155-270 (306)
233 PRK09112 DNA polymerase III su 96.9 0.014 3E-07 60.0 12.9 52 151-204 128-179 (351)
234 PRK14961 DNA polymerase III su 96.9 0.0078 1.7E-07 62.5 11.2 50 152-203 107-156 (363)
235 PRK14949 DNA polymerase III su 96.9 0.0061 1.3E-07 68.5 10.8 42 159-202 114-155 (944)
236 cd01120 RecA-like_NTPases RecA 96.9 0.0062 1.3E-07 54.9 9.3 39 67-106 1-39 (165)
237 cd03115 SRP The signal recogni 96.8 0.011 2.3E-07 54.5 10.6 123 67-208 2-126 (173)
238 PRK05642 DNA replication initi 96.8 0.0076 1.6E-07 58.4 10.0 35 66-101 46-80 (234)
239 PRK06893 DNA replication initi 96.8 0.0042 9.1E-08 60.0 8.2 37 64-101 38-74 (229)
240 smart00488 DEXDc2 DEAD-like he 96.8 0.0029 6.2E-08 63.4 7.2 59 51-109 9-76 (289)
241 smart00489 DEXDc3 DEAD-like he 96.8 0.0029 6.2E-08 63.4 7.2 59 51-109 9-76 (289)
242 PRK08903 DnaA regulatory inact 96.8 0.0072 1.6E-07 58.3 9.8 38 63-101 40-77 (227)
243 PRK12402 replication factor C 96.8 0.014 3E-07 60.0 11.9 34 56-89 25-60 (337)
244 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.0088 1.9E-07 57.6 9.8 37 63-100 36-72 (226)
245 TIGR00959 ffh signal recogniti 96.7 0.014 3E-07 61.4 11.8 123 66-206 100-224 (428)
246 PRK14958 DNA polymerase III su 96.7 0.011 2.4E-07 63.9 11.4 43 159-203 114-156 (509)
247 PRK14964 DNA polymerase III su 96.7 0.012 2.7E-07 62.7 11.4 50 152-203 104-153 (491)
248 PF05621 TniB: Bacterial TniB 96.7 0.013 2.9E-07 57.8 10.6 57 66-122 62-123 (302)
249 PRK06645 DNA polymerase III su 96.7 0.015 3.3E-07 62.4 11.7 48 152-201 116-163 (507)
250 cd03247 ABCC_cytochrome_bd The 96.7 0.01 2.2E-07 54.9 9.1 127 62-203 25-154 (178)
251 PRK14957 DNA polymerase III su 96.7 0.012 2.5E-07 63.8 10.7 51 151-203 106-156 (546)
252 cd03228 ABCC_MRP_Like The MRP 96.7 0.015 3.2E-07 53.4 10.1 133 62-211 25-158 (171)
253 PRK00411 cdc6 cell division co 96.7 0.012 2.6E-07 62.0 10.8 23 66-88 56-78 (394)
254 KOG2340 Uncharacterized conser 96.6 0.038 8.2E-07 57.7 13.6 114 275-412 551-671 (698)
255 KOG2373 Predicted mitochondria 96.6 0.00042 9.2E-09 68.0 -0.3 110 58-174 266-384 (514)
256 PRK15483 type III restriction- 96.6 0.021 4.6E-07 65.0 12.9 45 335-397 501-545 (986)
257 PRK08084 DNA replication initi 96.6 0.0074 1.6E-07 58.5 8.1 36 64-100 44-79 (235)
258 PRK00149 dnaA chromosomal repl 96.6 0.016 3.4E-07 62.1 11.3 22 66-87 149-170 (450)
259 PRK06921 hypothetical protein; 96.6 0.062 1.4E-06 53.0 14.5 37 64-101 116-153 (266)
260 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.015 3.2E-07 51.8 9.0 94 62-193 23-116 (144)
261 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.013 2.8E-07 52.9 8.8 124 62-214 22-146 (157)
262 PRK14969 DNA polymerase III su 96.5 0.02 4.2E-07 62.3 11.4 50 152-203 107-156 (527)
263 PRK14955 DNA polymerase III su 96.5 0.017 3.6E-07 60.8 10.6 49 152-202 115-163 (397)
264 TIGR00678 holB DNA polymerase 96.5 0.025 5.3E-07 52.8 10.6 49 153-203 85-133 (188)
265 PRK07471 DNA polymerase III su 96.5 0.022 4.8E-07 58.8 11.1 63 142-206 119-181 (365)
266 PRK14962 DNA polymerase III su 96.5 0.017 3.6E-07 61.8 10.2 31 58-88 26-59 (472)
267 TIGR02881 spore_V_K stage V sp 96.4 0.017 3.8E-07 57.0 9.8 20 66-85 43-62 (261)
268 COG0552 FtsY Signal recognitio 96.4 0.038 8.2E-07 55.0 11.8 134 66-218 140-283 (340)
269 TIGR02880 cbbX_cfxQ probable R 96.4 0.019 4E-07 57.4 10.0 36 66-101 59-97 (284)
270 PRK14086 dnaA chromosomal repl 96.4 0.049 1.1E-06 59.4 13.4 36 66-101 315-351 (617)
271 PRK14952 DNA polymerase III su 96.4 0.016 3.5E-07 63.3 9.9 49 153-203 107-155 (584)
272 TIGR00362 DnaA chromosomal rep 96.4 0.02 4.4E-07 60.4 10.5 20 66-85 137-156 (405)
273 PRK09111 DNA polymerase III su 96.4 0.029 6.2E-07 61.7 11.8 50 152-203 120-169 (598)
274 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.065 1.4E-06 51.8 12.8 69 147-217 140-208 (254)
275 PRK14959 DNA polymerase III su 96.4 0.023 5.1E-07 62.1 10.8 50 151-202 106-155 (624)
276 PRK06067 flagellar accessory p 96.3 0.019 4.1E-07 55.7 9.2 43 61-104 21-63 (234)
277 COG3267 ExeA Type II secretory 96.3 0.043 9.3E-07 52.4 11.0 60 58-119 43-103 (269)
278 PRK07764 DNA polymerase III su 96.3 0.025 5.5E-07 64.4 11.3 46 156-203 112-157 (824)
279 PRK14965 DNA polymerase III su 96.3 0.033 7.1E-07 61.4 11.8 51 151-203 106-156 (576)
280 PF00004 AAA: ATPase family as 96.3 0.0062 1.3E-07 52.9 5.1 22 68-89 1-22 (132)
281 cd03246 ABCC_Protease_Secretio 96.3 0.02 4.3E-07 52.7 8.7 126 62-203 25-153 (173)
282 PRK05896 DNA polymerase III su 96.3 0.03 6.5E-07 60.9 11.1 52 150-203 105-156 (605)
283 COG2804 PulE Type II secretory 96.3 0.017 3.7E-07 60.6 8.8 42 49-90 240-283 (500)
284 PRK14950 DNA polymerase III su 96.3 0.028 6E-07 62.2 11.1 49 152-202 108-156 (585)
285 cd03216 ABC_Carb_Monos_I This 96.3 0.023 5.1E-07 51.6 8.9 126 62-215 23-149 (163)
286 PRK08451 DNA polymerase III su 96.3 0.039 8.4E-07 59.6 11.8 43 159-203 112-154 (535)
287 TIGR02928 orc1/cdc6 family rep 96.3 0.02 4.4E-07 59.5 9.6 23 449-471 326-348 (365)
288 PF05127 Helicase_RecD: Helica 96.3 0.0024 5.2E-08 58.3 2.2 117 69-206 1-123 (177)
289 PF13177 DNA_pol3_delta2: DNA 96.3 0.043 9.4E-07 49.8 10.5 61 144-206 82-142 (162)
290 cd03223 ABCD_peroxisomal_ALDP 96.3 0.021 4.5E-07 52.2 8.4 27 62-88 24-50 (166)
291 PRK14087 dnaA chromosomal repl 96.2 0.046 1E-06 58.3 12.1 37 66-102 142-179 (450)
292 PRK14948 DNA polymerase III su 96.2 0.031 6.8E-07 61.8 11.1 51 150-202 107-157 (620)
293 PRK14951 DNA polymerase III su 96.2 0.024 5.1E-07 62.4 10.0 50 152-203 112-161 (618)
294 cd03230 ABC_DR_subfamily_A Thi 96.2 0.021 4.6E-07 52.5 8.4 136 62-214 23-161 (173)
295 PRK14963 DNA polymerase III su 96.2 0.032 6.9E-07 60.2 10.7 49 152-202 104-152 (504)
296 TIGR02868 CydC thiol reductant 96.2 0.022 4.8E-07 62.5 9.7 42 161-203 485-526 (529)
297 cd03238 ABC_UvrA The excision 96.2 0.037 7.9E-07 51.0 9.6 25 62-86 18-42 (176)
298 KOG2228 Origin recognition com 96.2 0.12 2.6E-06 51.3 13.3 129 64-209 48-184 (408)
299 PHA02544 44 clamp loader, smal 96.1 0.05 1.1E-06 55.3 11.3 31 57-87 32-65 (316)
300 cd03214 ABC_Iron-Siderophores_ 96.1 0.015 3.4E-07 53.8 6.8 26 62-87 22-47 (180)
301 KOG0388 SNF2 family DNA-depend 96.1 0.035 7.6E-07 59.7 9.9 116 274-413 1042-1158(1185)
302 PF00308 Bac_DnaA: Bacterial d 96.1 0.027 5.9E-07 53.9 8.6 36 66-101 35-71 (219)
303 COG0541 Ffh Signal recognition 96.1 0.1 2.3E-06 53.7 13.0 137 66-219 101-239 (451)
304 PF01637 Arch_ATPase: Archaeal 96.1 0.036 7.9E-07 53.2 9.6 34 56-89 9-44 (234)
305 PHA03333 putative ATPase subun 96.0 0.24 5.3E-06 54.2 16.1 147 58-217 181-343 (752)
306 PRK12900 secA preprotein trans 96.0 0.008 1.7E-07 67.9 5.0 114 57-174 143-268 (1025)
307 PRK14088 dnaA chromosomal repl 96.0 0.074 1.6E-06 56.6 12.1 36 66-101 131-167 (440)
308 CHL00181 cbbX CbbX; Provisiona 96.0 0.095 2E-06 52.4 12.2 21 65-85 59-79 (287)
309 PRK11747 dinG ATP-dependent DN 96.0 0.015 3.3E-07 65.5 7.3 59 49-109 24-93 (697)
310 PRK08533 flagellar accessory p 96.0 0.05 1.1E-06 52.5 9.9 41 62-103 21-61 (230)
311 TIGR02782 TrbB_P P-type conjug 96.0 0.019 4.1E-07 57.7 7.2 52 55-106 122-174 (299)
312 PF00158 Sigma54_activat: Sigm 96.0 0.068 1.5E-06 48.8 10.2 110 53-192 10-119 (168)
313 KOG1805 DNA replication helica 95.9 0.011 2.4E-07 65.8 5.5 115 53-174 673-806 (1100)
314 COG1444 Predicted P-loop ATPas 95.9 0.18 4E-06 56.0 14.9 154 33-206 198-356 (758)
315 PTZ00112 origin recognition co 95.9 0.076 1.7E-06 59.6 11.8 19 67-85 783-801 (1164)
316 TIGR00376 DNA helicase, putati 95.9 0.019 4.2E-07 63.8 7.5 65 51-117 158-223 (637)
317 cd03229 ABC_Class3 This class 95.9 0.035 7.6E-07 51.3 8.2 139 62-214 23-167 (178)
318 PRK07940 DNA polymerase III su 95.9 0.08 1.7E-06 55.3 11.5 52 151-205 104-155 (394)
319 cd01124 KaiC KaiC is a circadi 95.9 0.035 7.6E-07 51.5 8.2 36 67-103 1-36 (187)
320 PTZ00293 thymidine kinase; Pro 95.8 0.053 1.1E-06 51.0 9.0 39 64-103 3-41 (211)
321 PRK13833 conjugal transfer pro 95.8 0.021 4.6E-07 57.6 6.9 32 56-87 135-166 (323)
322 KOG1802 RNA helicase nonsense 95.8 0.016 3.4E-07 61.9 6.0 66 51-117 411-476 (935)
323 COG2256 MGS1 ATPase related to 95.8 0.049 1.1E-06 55.4 9.1 35 165-206 105-140 (436)
324 PRK06620 hypothetical protein; 95.8 0.045 9.7E-07 52.2 8.6 19 66-84 45-63 (214)
325 cd03222 ABC_RNaseL_inhibitor T 95.8 0.2 4.4E-06 46.1 12.6 96 61-192 21-116 (177)
326 PRK12901 secA preprotein trans 95.8 0.012 2.6E-07 66.7 5.2 115 57-174 174-300 (1112)
327 PLN03025 replication factor C 95.7 0.11 2.4E-06 52.9 11.8 23 66-88 35-57 (319)
328 PRK14954 DNA polymerase III su 95.7 0.072 1.6E-06 58.8 10.8 50 152-203 115-164 (620)
329 PF00437 T2SE: Type II/IV secr 95.7 0.017 3.7E-07 57.4 5.5 46 60-106 122-167 (270)
330 PRK05563 DNA polymerase III su 95.7 0.085 1.8E-06 57.9 11.3 48 152-201 107-154 (559)
331 COG2812 DnaX DNA polymerase II 95.6 0.02 4.4E-07 61.0 6.1 51 151-203 106-156 (515)
332 PF13555 AAA_29: P-loop contai 95.6 0.014 3E-07 43.2 3.5 21 65-85 23-43 (62)
333 PRK12422 chromosomal replicati 95.6 0.11 2.5E-06 55.2 11.8 35 66-101 142-176 (445)
334 COG3421 Uncharacterized protei 95.6 0.082 1.8E-06 56.1 10.2 135 71-207 3-166 (812)
335 PRK00440 rfc replication facto 95.6 0.21 4.5E-06 50.8 13.3 23 66-88 39-61 (319)
336 PF05496 RuvB_N: Holliday junc 95.6 0.052 1.1E-06 51.3 7.9 24 66-89 51-74 (233)
337 PRK13851 type IV secretion sys 95.5 0.027 5.8E-07 57.6 6.4 46 58-105 155-200 (344)
338 PRK14953 DNA polymerase III su 95.5 0.099 2.1E-06 56.2 11.0 49 151-201 106-154 (486)
339 TIGR02397 dnaX_nterm DNA polym 95.5 0.12 2.5E-06 53.6 11.4 50 151-202 104-153 (355)
340 PRK13894 conjugal transfer ATP 95.5 0.031 6.6E-07 56.6 6.7 53 54-106 137-190 (319)
341 PRK04195 replication factor C 95.5 0.18 3.9E-06 54.6 13.0 25 65-89 39-63 (482)
342 cd01131 PilT Pilus retraction 95.5 0.021 4.5E-07 53.8 5.1 38 66-103 2-39 (198)
343 TIGR00604 rad3 DNA repair heli 95.5 0.029 6.2E-07 63.7 7.1 59 51-109 11-75 (705)
344 PRK14970 DNA polymerase III su 95.5 0.07 1.5E-06 55.6 9.5 30 57-86 28-60 (367)
345 KOG0780 Signal recognition par 95.5 0.12 2.6E-06 52.2 10.3 135 66-217 102-238 (483)
346 cd03213 ABCG_EPDR ABCG transpo 95.5 0.055 1.2E-06 50.8 7.8 26 62-87 32-57 (194)
347 TIGR03375 type_I_sec_LssB type 95.4 0.033 7.2E-07 63.3 7.5 53 150-203 605-657 (694)
348 PHA02533 17 large terminase pr 95.4 0.32 6.9E-06 52.9 14.5 156 47-215 56-219 (534)
349 cd01130 VirB11-like_ATPase Typ 95.4 0.042 9E-07 51.2 6.6 31 57-87 17-47 (186)
350 COG1474 CDC6 Cdc6-related prot 95.4 0.12 2.6E-06 53.4 10.6 18 66-83 43-60 (366)
351 COG1132 MdlB ABC-type multidru 95.4 0.058 1.3E-06 59.7 8.9 28 62-89 352-379 (567)
352 PRK05707 DNA polymerase III su 95.4 0.13 2.8E-06 52.5 10.6 56 148-205 90-145 (328)
353 PRK06647 DNA polymerase III su 95.3 0.096 2.1E-06 57.3 10.2 45 155-201 110-154 (563)
354 cd03239 ABC_SMC_head The struc 95.3 0.11 2.5E-06 47.9 9.3 43 162-205 114-157 (178)
355 PF00580 UvrD-helicase: UvrD/R 95.3 0.028 6.1E-07 56.8 5.8 64 53-119 3-69 (315)
356 TIGR02974 phageshock_pspF psp 95.3 0.17 3.6E-06 51.8 11.3 45 53-98 10-54 (329)
357 COG0470 HolB ATPase involved i 95.3 0.059 1.3E-06 54.9 8.1 59 144-204 89-147 (325)
358 PRK14971 DNA polymerase III su 95.3 0.11 2.4E-06 57.5 10.6 50 152-203 109-158 (614)
359 COG2909 MalT ATP-dependent tra 95.3 0.058 1.3E-06 59.8 8.1 143 54-206 23-170 (894)
360 cd03369 ABCC_NFT1 Domain 2 of 95.2 0.04 8.7E-07 52.2 6.2 26 62-87 31-56 (207)
361 cd03215 ABC_Carb_Monos_II This 95.2 0.094 2E-06 48.6 8.4 26 62-87 23-48 (182)
362 PF00931 NB-ARC: NB-ARC domain 95.2 0.078 1.7E-06 53.0 8.5 129 55-205 5-138 (287)
363 PRK13900 type IV secretion sys 95.2 0.043 9.4E-07 55.9 6.5 30 58-87 153-182 (332)
364 PRK09087 hypothetical protein; 95.1 0.14 2.9E-06 49.4 9.6 22 65-86 44-65 (226)
365 COG0553 HepA Superfamily II DN 95.1 0.056 1.2E-06 63.2 8.4 112 278-413 713-826 (866)
366 PRK11823 DNA repair protein Ra 95.1 0.041 8.9E-07 58.6 6.6 88 61-174 76-166 (446)
367 COG1875 NYN ribonuclease and A 95.1 0.11 2.4E-06 52.2 8.9 39 47-85 225-265 (436)
368 TIGR01420 pilT_fam pilus retra 95.1 0.035 7.6E-07 57.1 5.8 42 64-105 121-162 (343)
369 PRK08769 DNA polymerase III su 95.1 0.17 3.7E-06 51.2 10.6 61 144-206 93-153 (319)
370 cd01393 recA_like RecA is a b 95.1 0.06 1.3E-06 51.8 7.1 44 61-104 15-63 (226)
371 PRK06305 DNA polymerase III su 95.1 0.15 3.3E-06 54.4 10.7 42 160-203 117-158 (451)
372 COG4987 CydC ABC-type transpor 95.1 0.076 1.6E-06 56.0 8.0 45 161-206 489-533 (573)
373 KOG0991 Replication factor C, 95.1 0.043 9.2E-07 51.5 5.4 21 66-86 49-69 (333)
374 COG1199 DinG Rad3-related DNA 95.0 0.044 9.6E-07 61.8 6.9 61 47-109 12-78 (654)
375 PRK09354 recA recombinase A; P 95.0 0.075 1.6E-06 54.1 7.7 57 61-123 56-112 (349)
376 TIGR02858 spore_III_AA stage I 95.0 0.31 6.8E-06 48.1 11.9 23 66-88 112-134 (270)
377 PRK14712 conjugal transfer nic 95.0 0.22 4.7E-06 60.3 12.5 53 275-327 1090-1144(1623)
378 COG1119 ModF ABC-type molybden 95.0 0.13 2.9E-06 49.0 8.6 31 61-91 53-83 (257)
379 TIGR02012 tigrfam_recA protein 95.0 0.08 1.7E-06 53.4 7.7 46 61-107 51-96 (321)
380 TIGR02524 dot_icm_DotB Dot/Icm 95.0 0.044 9.6E-07 56.5 6.0 30 58-87 126-156 (358)
381 COG1120 FepC ABC-type cobalami 94.9 0.055 1.2E-06 52.5 6.2 26 62-87 25-50 (258)
382 PRK07133 DNA polymerase III su 94.9 0.13 2.9E-06 57.2 9.9 52 150-203 104-155 (725)
383 PRK07399 DNA polymerase III su 94.9 0.26 5.7E-06 49.9 11.4 61 142-205 102-162 (314)
384 COG2805 PilT Tfp pilus assembl 94.9 0.05 1.1E-06 53.2 5.8 46 64-109 124-169 (353)
385 cd03233 ABC_PDR_domain1 The pl 94.9 0.15 3.2E-06 48.2 9.0 66 148-214 120-186 (202)
386 PRK05973 replicative DNA helic 94.9 0.029 6.2E-07 54.1 4.1 57 56-115 55-111 (237)
387 cd03248 ABCC_TAP TAP, the Tran 94.9 0.21 4.6E-06 48.0 10.3 26 62-87 37-62 (226)
388 TIGR02237 recomb_radB DNA repa 94.9 0.056 1.2E-06 51.3 6.1 41 62-103 9-49 (209)
389 TIGR02688 conserved hypothetic 94.9 0.082 1.8E-06 54.8 7.5 26 60-85 204-229 (449)
390 PRK11174 cysteine/glutathione 94.9 0.087 1.9E-06 58.7 8.5 43 161-204 500-542 (588)
391 KOG0058 Peptide exporter, ABC 94.8 0.08 1.7E-06 57.8 7.7 31 58-88 487-517 (716)
392 cd03254 ABCC_Glucan_exporter_l 94.8 0.18 4E-06 48.5 9.7 26 62-87 26-51 (229)
393 PRK13709 conjugal transfer nic 94.8 0.32 6.9E-06 59.7 13.2 124 49-205 966-1099(1747)
394 TIGR03345 VI_ClpV1 type VI sec 94.8 0.22 4.8E-06 57.4 11.6 118 67-214 598-726 (852)
395 PRK13342 recombination factor 94.8 0.091 2E-06 55.6 7.9 22 66-87 37-58 (413)
396 cd00984 DnaB_C DnaB helicase C 94.7 0.027 5.9E-07 54.8 3.6 46 57-102 5-50 (242)
397 PF01443 Viral_helicase1: Vira 94.7 0.033 7.2E-07 53.8 4.1 22 68-89 1-22 (234)
398 COG3587 Restriction endonuclea 94.7 0.1 2.2E-06 57.7 7.9 52 335-404 483-537 (985)
399 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.7 0.1 2.2E-06 50.7 7.5 26 62-87 26-51 (238)
400 cd01129 PulE-GspE PulE/GspE Th 94.7 0.077 1.7E-06 52.4 6.6 32 57-88 71-103 (264)
401 cd03289 ABCC_CFTR2 The CFTR su 94.6 0.11 2.4E-06 51.5 7.8 55 148-203 140-194 (275)
402 PRK04841 transcriptional regul 94.6 0.2 4.4E-06 58.8 11.1 137 56-206 20-162 (903)
403 cd03226 ABC_cobalt_CbiO_domain 94.6 0.11 2.3E-06 49.2 7.2 26 62-87 23-48 (205)
404 cd03244 ABCC_MRP_domain2 Domai 94.5 0.23 4.9E-06 47.6 9.5 26 62-87 27-52 (221)
405 TIGR02857 CydD thiol reductant 94.5 0.046 9.9E-07 60.0 5.2 43 161-204 473-515 (529)
406 PF03237 Terminase_6: Terminas 94.5 0.43 9.3E-06 49.4 12.3 140 69-216 1-148 (384)
407 cd00544 CobU Adenosylcobinamid 94.5 0.24 5.2E-06 45.3 9.0 82 68-174 2-83 (169)
408 PRK13657 cyclic beta-1,2-gluca 94.5 0.056 1.2E-06 60.2 5.8 54 150-204 475-528 (588)
409 PHA00729 NTP-binding motif con 94.5 0.13 2.9E-06 48.9 7.3 30 58-87 8-39 (226)
410 PHA03368 DNA packaging termina 94.4 0.75 1.6E-05 50.3 13.7 140 64-218 253-402 (738)
411 TIGR02655 circ_KaiC circadian 94.4 0.083 1.8E-06 57.1 6.8 94 62-171 260-360 (484)
412 PRK06871 DNA polymerase III su 94.4 0.17 3.6E-06 51.4 8.5 60 144-205 87-146 (325)
413 TIGR01547 phage_term_2 phage t 94.4 0.22 4.7E-06 52.5 9.8 131 66-207 2-141 (396)
414 PRK11176 lipid transporter ATP 94.4 0.065 1.4E-06 59.6 6.1 44 161-205 495-538 (582)
415 PRK15177 Vi polysaccharide exp 94.4 0.067 1.5E-06 51.0 5.3 26 62-87 10-35 (213)
416 cd00983 recA RecA is a bacter 94.4 0.089 1.9E-06 53.1 6.4 46 61-107 51-96 (325)
417 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.046 1E-06 53.1 4.2 42 61-103 17-58 (237)
418 PRK10865 protein disaggregatio 94.3 0.36 7.8E-06 55.9 12.0 31 67-98 600-630 (857)
419 PRK08058 DNA polymerase III su 94.3 0.39 8.4E-06 49.1 11.1 51 152-204 98-148 (329)
420 PRK10917 ATP-dependent DNA hel 94.3 0.11 2.5E-06 58.5 7.8 79 275-358 309-388 (681)
421 TIGR01189 ccmA heme ABC export 94.3 0.079 1.7E-06 49.9 5.6 26 62-87 23-48 (198)
422 PRK11054 helD DNA helicase IV; 94.3 0.21 4.6E-06 56.1 9.8 87 47-156 193-282 (684)
423 TIGR03771 anch_rpt_ABC anchore 94.3 0.44 9.6E-06 45.7 10.9 26 62-87 3-28 (223)
424 cd03251 ABCC_MsbA MsbA is an e 94.3 0.076 1.6E-06 51.4 5.6 42 161-203 153-194 (234)
425 COG4555 NatA ABC-type Na+ tran 94.3 0.089 1.9E-06 48.5 5.5 51 162-213 149-201 (245)
426 PRK09544 znuC high-affinity zi 94.3 0.055 1.2E-06 53.1 4.6 25 62-86 27-51 (251)
427 cd03232 ABC_PDR_domain2 The pl 94.3 0.14 3.1E-06 47.8 7.3 25 62-86 30-54 (192)
428 TIGR02788 VirB11 P-type DNA tr 94.3 0.09 1.9E-06 53.2 6.2 27 60-86 139-165 (308)
429 PRK05580 primosome assembly pr 94.2 0.11 2.4E-06 58.5 7.4 74 276-358 190-263 (679)
430 COG1222 RPT1 ATP-dependent 26S 94.2 0.68 1.5E-05 46.6 11.9 51 29-82 150-202 (406)
431 TIGR02525 plasmid_TraJ plasmid 94.2 0.099 2.1E-06 54.0 6.3 25 63-87 147-171 (372)
432 PRK11160 cysteine/glutathione 94.2 0.072 1.6E-06 59.1 5.7 28 61-88 362-389 (574)
433 COG1126 GlnQ ABC-type polar am 94.2 0.032 6.8E-07 52.0 2.4 25 61-85 24-48 (240)
434 TIGR03608 L_ocin_972_ABC putat 94.2 0.37 8E-06 45.5 9.9 26 62-87 21-46 (206)
435 PRK13543 cytochrome c biogenes 94.1 0.1 2.3E-06 49.7 6.1 26 62-87 34-59 (214)
436 COG1122 CbiO ABC-type cobalt t 94.1 0.38 8.2E-06 46.4 9.9 54 162-216 154-207 (235)
437 PRK05564 DNA polymerase III su 94.1 0.32 7E-06 49.3 10.0 50 152-203 81-130 (313)
438 cd03300 ABC_PotA_N PotA is an 94.1 0.059 1.3E-06 52.2 4.4 27 62-88 23-49 (232)
439 cd03252 ABCC_Hemolysin The ABC 94.1 0.24 5.2E-06 48.0 8.7 42 161-203 153-194 (237)
440 cd03237 ABC_RNaseL_inhibitor_d 94.1 0.18 3.9E-06 49.2 7.8 26 62-87 22-47 (246)
441 KOG0391 SNF2 family DNA-depend 94.1 0.25 5.5E-06 56.4 9.5 119 52-174 617-747 (1958)
442 COG1136 SalX ABC-type antimicr 94.1 0.057 1.2E-06 51.4 4.0 27 61-87 27-53 (226)
443 PRK10789 putative multidrug tr 94.1 0.1 2.2E-06 57.8 6.7 26 62-87 338-363 (569)
444 cd01121 Sms Sms (bacterial rad 94.0 0.13 2.8E-06 53.3 7.0 42 61-103 78-119 (372)
445 cd03235 ABC_Metallic_Cations A 94.0 0.41 8.9E-06 45.5 10.0 26 61-86 21-46 (213)
446 PF06745 KaiC: KaiC; InterPro 94.0 0.045 9.9E-07 52.7 3.4 42 62-103 16-57 (226)
447 KOG0744 AAA+-type ATPase [Post 94.0 0.025 5.3E-07 55.7 1.4 23 63-85 175-197 (423)
448 PRK06904 replicative DNA helic 94.0 0.21 4.6E-06 53.5 8.7 66 49-116 204-270 (472)
449 cd03245 ABCC_bacteriocin_expor 94.0 0.14 3E-06 49.1 6.6 26 62-87 27-52 (220)
450 PRK15429 formate hydrogenlyase 94.0 0.27 5.8E-06 55.8 10.0 43 57-100 391-433 (686)
451 TIGR03411 urea_trans_UrtD urea 94.0 0.47 1E-05 46.1 10.5 52 161-215 158-209 (242)
452 COG4962 CpaF Flp pilus assembl 94.0 0.14 3E-06 51.4 6.5 42 58-101 166-207 (355)
453 PRK13538 cytochrome c biogenes 93.9 0.098 2.1E-06 49.5 5.5 26 62-87 24-49 (204)
454 PRK10790 putative multidrug tr 93.9 0.1 2.2E-06 58.1 6.5 27 62-88 364-390 (592)
455 TIGR01817 nifA Nif-specific re 93.9 0.51 1.1E-05 51.8 11.7 45 54-99 208-252 (534)
456 cd03263 ABC_subfamily_A The AB 93.9 0.46 1E-05 45.4 10.1 52 161-215 148-199 (220)
457 TIGR00635 ruvB Holliday juncti 93.9 0.26 5.5E-06 49.9 8.7 22 66-87 31-52 (305)
458 PRK14250 phosphate ABC transpo 93.9 0.13 2.8E-06 50.1 6.2 26 62-87 26-51 (241)
459 COG2204 AtoC Response regulato 93.8 0.39 8.3E-06 50.7 10.0 108 55-192 154-261 (464)
460 TIGR01277 thiQ thiamine ABC tr 93.8 0.1 2.3E-06 49.7 5.5 26 62-87 21-46 (213)
461 PLN03232 ABC transporter C fam 93.8 0.18 3.8E-06 62.2 8.7 27 61-87 1258-1284(1495)
462 TIGR00595 priA primosomal prot 93.8 0.086 1.9E-06 57.1 5.4 75 275-358 24-98 (505)
463 COG1110 Reverse gyrase [DNA re 93.8 0.15 3.2E-06 57.6 7.1 75 267-344 116-190 (1187)
464 COG0396 sufC Cysteine desulfur 93.8 0.09 2E-06 49.5 4.7 51 162-216 160-211 (251)
465 TIGR01192 chvA glucan exporter 93.8 0.27 5.8E-06 54.7 9.3 42 161-203 486-527 (585)
466 PF10443 RNA12: RNA12 protein; 93.8 0.29 6.4E-06 50.7 8.8 53 165-217 149-205 (431)
467 COG0593 DnaA ATPase involved i 93.8 0.42 9E-06 49.7 9.9 21 65-85 113-133 (408)
468 PRK14873 primosome assembly pr 93.8 0.12 2.5E-06 57.7 6.3 76 275-358 187-262 (665)
469 TIGR00763 lon ATP-dependent pr 93.7 0.38 8.3E-06 55.2 10.7 38 51-88 325-370 (775)
470 cd03219 ABC_Mj1267_LivG_branch 93.7 0.11 2.5E-06 50.2 5.6 25 62-86 23-47 (236)
471 TIGR03346 chaperone_ClpB ATP-d 93.7 0.22 4.7E-06 57.8 8.7 136 50-219 174-322 (852)
472 PRK10522 multidrug transporter 93.7 0.55 1.2E-05 51.7 11.5 26 62-87 346-371 (547)
473 COG3604 FhlA Transcriptional r 93.7 0.37 8.1E-06 50.5 9.3 103 59-192 239-343 (550)
474 cd03253 ABCC_ATM1_transporter 93.7 0.31 6.8E-06 47.1 8.6 26 62-87 24-49 (236)
475 cd03268 ABC_BcrA_bacitracin_re 93.6 0.1 2.2E-06 49.5 5.0 26 62-87 23-48 (208)
476 PF13207 AAA_17: AAA domain; P 93.6 0.061 1.3E-06 46.0 3.1 22 67-88 1-22 (121)
477 TIGR03522 GldA_ABC_ATP gliding 93.6 0.1 2.2E-06 52.7 5.2 64 148-214 135-198 (301)
478 TIGR03878 thermo_KaiC_2 KaiC d 93.6 0.077 1.7E-06 52.3 4.2 42 61-103 32-73 (259)
479 cd03260 ABC_PstB_phosphate_tra 93.6 0.3 6.4E-06 47.0 8.3 52 161-215 156-207 (227)
480 TIGR03864 PQQ_ABC_ATP ABC tran 93.6 0.089 1.9E-06 51.0 4.6 25 62-86 24-48 (236)
481 COG1221 PspF Transcriptional r 93.6 0.37 8E-06 49.9 9.2 107 57-192 93-199 (403)
482 COG0467 RAD55 RecA-superfamily 93.6 0.081 1.8E-06 52.2 4.4 42 61-103 19-60 (260)
483 PRK11247 ssuB aliphatic sulfon 93.6 0.085 1.8E-06 51.9 4.4 26 62-87 35-60 (257)
484 PRK13695 putative NTPase; Prov 93.6 1.2 2.7E-05 40.7 12.0 21 67-87 2-22 (174)
485 TIGR00954 3a01203 Peroxysomal 93.6 0.38 8.1E-06 54.2 10.1 26 62-87 475-500 (659)
486 PRK10247 putative ABC transpor 93.6 0.18 4E-06 48.4 6.7 26 62-87 30-55 (225)
487 cd03227 ABC_Class2 ABC-type Cl 93.6 0.21 4.7E-06 45.2 6.8 45 163-210 98-143 (162)
488 TIGR02203 MsbA_lipidA lipid A 93.5 0.14 2.9E-06 56.9 6.5 57 148-205 471-527 (571)
489 cd03281 ABC_MSH5_euk MutS5 hom 93.5 0.62 1.3E-05 44.4 10.1 22 65-86 29-50 (213)
490 PLN03130 ABC transporter C fam 93.5 0.19 4.1E-06 62.3 8.1 27 61-87 1261-1287(1622)
491 PRK08760 replicative DNA helic 93.5 0.24 5.3E-06 53.2 8.1 59 56-116 220-278 (476)
492 TIGR02640 gas_vesic_GvpN gas v 93.5 0.11 2.3E-06 51.3 5.0 37 51-87 7-43 (262)
493 cd01128 rho_factor Transcripti 93.5 0.075 1.6E-06 51.8 3.8 27 61-87 12-38 (249)
494 TIGR02639 ClpA ATP-dependent C 93.5 0.46 9.9E-06 54.2 10.7 38 50-87 183-225 (731)
495 KOG0056 Heavy metal exporter H 93.5 0.27 5.8E-06 51.3 7.8 29 61-89 560-588 (790)
496 KOG0741 AAA+-type ATPase [Post 93.5 0.52 1.1E-05 49.7 9.8 24 67-90 540-563 (744)
497 COG1435 Tdk Thymidine kinase [ 93.4 0.46 1E-05 43.8 8.5 89 65-174 4-92 (201)
498 cd03291 ABCC_CFTR1 The CFTR su 93.4 0.2 4.4E-06 50.0 6.9 26 62-87 60-85 (282)
499 TIGR03689 pup_AAA proteasome A 93.4 0.12 2.7E-06 55.5 5.6 22 65-86 216-237 (512)
500 cd03231 ABC_CcmA_heme_exporter 93.4 0.12 2.5E-06 48.8 5.0 26 62-87 23-48 (201)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-124 Score=962.84 Aligned_cols=528 Identities=59% Similarity=0.948 Sum_probs=512.7
Q ss_pred CCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHH
Q 007931 33 SSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVA 112 (584)
Q Consensus 33 ~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~ 112 (584)
.........+.++|..|||++++++|++++++++++||.|+||||||||+||++++.++...++ |.||||||+|+.++|
T Consensus 34 ~~~~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA 112 (674)
T KOG0922|consen 34 SYGKSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLA 112 (674)
T ss_pred ccccccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHH
Confidence 3445556678999999999999999999999999999999999999999999999999998887 999999999999999
Q ss_pred HHHHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH
Q 007931 113 SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (584)
Q Consensus 113 ~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (584)
+||+.|+++.+|..|||++||++.++. .|+|.|+|+|+|++++..|+.|++|++|||||||||++.+|.++++||++.+
T Consensus 113 ~RVAeE~~~~lG~~VGY~IRFed~ts~-~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~ 191 (674)
T KOG0922|consen 113 KRVAEEMGCQLGEEVGYTIRFEDSTSK-DTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILK 191 (674)
T ss_pred HHHHHHhCCCcCceeeeEEEecccCCC-ceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHh
Q 007931 193 CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD 272 (584)
Q Consensus 193 ~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~ 272 (584)
.++++|+|+||||+|++.|.+||++++ ++.++||.|||+++|...+..||++..+..+.++|.
T Consensus 192 ~R~~LklIimSATlda~kfS~yF~~a~-----------------i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~ 254 (674)
T KOG0922|consen 192 KRPDLKLIIMSATLDAEKFSEYFNNAP-----------------ILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHL 254 (674)
T ss_pred cCCCceEEEEeeeecHHHHHHHhcCCc-----------------eEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHc
Confidence 999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccC
Q 007931 273 KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (584)
Q Consensus 273 ~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip 352 (584)
.+++|+||||++|+++|+.+++.|.+.......+.+. .+.++||.|+.++|.+||+..+.|.+|||+|||+||++||||
T Consensus 255 ~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 255 TEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTID 333 (674)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEec
Confidence 9999999999999999999999999998777766666 899999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCCCCCCcccccchhHHH
Q 007931 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCV 432 (584)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~ 432 (584)
+|.||||+|++|++.|||..|++.|...|+|++++.||+|||||++||+|||||++++|+. |++.++|||+|++|...+
T Consensus 334 GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~-~~~~~~PEI~R~~Ls~~v 412 (674)
T KOG0922|consen 334 GIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK-MPLQTVPEIQRVNLSSAV 412 (674)
T ss_pred ceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh-cccCCCCceeeechHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999977 999999999999999999
Q ss_pred HHHHhcCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCChHHHHHH
Q 007931 433 IQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITI 512 (584)
Q Consensus 433 L~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i 512 (584)
|++|++|++|+..|+|+|||+.+++..|++.|+.+||||++|.+|.|+|+.|+.+|++|.++|+++.+..+||.+|+++|
T Consensus 413 L~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i 492 (674)
T KOG0922|consen 413 LQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTI 492 (674)
T ss_pred HHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhh
Confidence 99999999999999999999999999999999999999999999977999999999999999999999999999999999
Q ss_pred HHhhccCcccccCcccHHH-HHHHHhhccCCCCCHHHHHHHHHHHHHcCCcHHHHHHhCCCHHHHHHHHH
Q 007931 513 SAVLSIQSIWVSGRGAQKE-LDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMVRNLI 581 (584)
Q Consensus 513 ~a~l~~~~~f~~~~~~~~~-~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~~~~a~~ 581 (584)
+|+||++++|..|.+.+.+ ++..|.+|...+|||+|+|++|+.|.+++.+++||++||||+++|++|.+
T Consensus 493 ~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ 562 (674)
T KOG0922|consen 493 AAMLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKD 562 (674)
T ss_pred eeeeeccceecCccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHH
Confidence 9999999999999988777 88999999999999999999999999999999999999999999999875
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-122 Score=933.95 Aligned_cols=524 Identities=52% Similarity=0.875 Sum_probs=513.8
Q ss_pred hhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHH
Q 007931 39 YASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE 118 (584)
Q Consensus 39 ~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~ 118 (584)
-..+.+.|+.||+|.++++++.++.+++++||.|+||||||||+|||+.+.++..+++.|.|||||++||.++|.|++++
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHH
Confidence 45688889999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCce
Q 007931 119 MGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (584)
Q Consensus 119 ~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (584)
+|+.+|..|||+++|+++++. +|.|.|+|+|+|++.++.+|.|..|++|||||||||.+++|++.++++++.+.++++|
T Consensus 334 MgvkLG~eVGYsIRFEdcTSe-kTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLK 412 (902)
T KOG0923|consen 334 MGVKLGHEVGYSIRFEDCTSE-KTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLK 412 (902)
T ss_pred hCcccccccceEEEeccccCc-ceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcce
Confidence 999999999999999999997 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCC
Q 007931 199 LIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (584)
Q Consensus 199 vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 278 (584)
++++|||+|++.|..||+..+ ++.+|||.|||+++|...+..||+++++..+++||...+.|+
T Consensus 413 llIsSAT~DAekFS~fFDdap-----------------IF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GD 475 (902)
T KOG0923|consen 413 LLISSATMDAEKFSAFFDDAP-----------------IFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGD 475 (902)
T ss_pred EEeeccccCHHHHHHhccCCc-----------------EEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCcc
Confidence 999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred EEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEE
Q 007931 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (584)
Q Consensus 279 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VI 358 (584)
||||+.+.++++.+.+.|.+....++.....+.+.|+|++||.+.|.+||++.++|.+|||+||||||+++||++|.|||
T Consensus 476 ILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yVi 555 (902)
T KOG0923|consen 476 ILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVI 555 (902)
T ss_pred EEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEe
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred ecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCCCCCCcccccchhHHHHHHHhc
Q 007931 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKAL 438 (584)
Q Consensus 359 d~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~ 438 (584)
|.|++|++.|||++|+..|...|+|++++.||+|||||++||+|||||+...|.+.+...+.|||+|.+|.+++|.|++|
T Consensus 556 DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSL 635 (902)
T KOG0923|consen 556 DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSL 635 (902)
T ss_pred cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCChHHHHHHHHhhcc
Q 007931 439 GIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSI 518 (584)
Q Consensus 439 ~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~l~~ 518 (584)
||.|+.+|+|+||||.+++..||+.|+.+||++..|+||. +|+.|++||+||+++|||+.+...+|.+|+++|+||||+
T Consensus 636 GI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk-~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~ 714 (902)
T KOG0923|consen 636 GIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELTK-LGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSV 714 (902)
T ss_pred CcchhcccccCCCCChHHHHHHHHHHHHhhccccccchhh-hhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999994 999999999999999999999999999999999999999
Q ss_pred C-cccccCcccHHHHHHHHhhccCCCCCHHHHHHHHHHHHHcCCcHHHHHHhCCCHHHHHHHHH
Q 007931 519 Q-SIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMVRNLI 581 (584)
Q Consensus 519 ~-~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~~~~a~~ 581 (584)
. ++|.+|.+...-++++++.|....|||+++|++|++|.+++.+.+||++||+.+++|++|++
T Consensus 715 ~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rard 778 (902)
T KOG0923|consen 715 GASVFYRPKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARD 778 (902)
T ss_pred CchheecchhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHH
Confidence 8 79999999888899999999999999999999999999999999999999999999999986
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-119 Score=911.19 Aligned_cols=522 Identities=47% Similarity=0.828 Sum_probs=507.5
Q ss_pred hhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 007931 40 ASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (584)
Q Consensus 40 ~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~ 119 (584)
..+.++|+.||++..+++++..+..|+++||+|+||||||||+|||+++.++..++ .|.|||||++||.++|+|++.++
T Consensus 346 k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G-mIGcTQPRRvAAiSVAkrVa~EM 424 (1042)
T KOG0924|consen 346 KSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG-MIGCTQPRRVAAISVAKRVAEEM 424 (1042)
T ss_pred chHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC-eeeecCchHHHHHHHHHHHHHHh
Confidence 34889999999999999999999999999999999999999999999999998776 89999999999999999999999
Q ss_pred CCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceE
Q 007931 120 GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (584)
Q Consensus 120 ~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~v 199 (584)
+..+|..|||.+||++.++. .|.|.|+|+|+|++..+.+..|.+|++||+||||||++++|.+.++++.++..+.++|+
T Consensus 425 ~~~lG~~VGYsIRFEdvT~~-~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKl 503 (1042)
T KOG0924|consen 425 GVTLGDTVGYSIRFEDVTSE-DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKL 503 (1042)
T ss_pred CCccccccceEEEeeecCCC-ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceE
Confidence 99999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCE
Q 007931 200 IISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDI 279 (584)
Q Consensus 200 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 279 (584)
|++|||+|++.|.+||+++| .+.++||+|||++.|...+..||++.++...+.||....+|+|
T Consensus 504 iVtSATm~a~kf~nfFgn~p-----------------~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gdi 566 (1042)
T KOG0924|consen 504 IVTSATMDAQKFSNFFGNCP-----------------QFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDI 566 (1042)
T ss_pred EEeeccccHHHHHHHhCCCc-----------------eeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCE
Confidence 99999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred EEEeCcHHHHHHHHHHHHHHhhhccC-CCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEE
Q 007931 280 LVFLTGQDDIDATIQLLTEEARTSKK-NSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (584)
Q Consensus 280 LVF~~~~~~i~~l~~~L~~~~~~~~~-~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VI 358 (584)
|||.+|+++++..+..+.+.+.++.. ...++.|+++|+.||.+-|.++|+....|.+||||||||||+++|||+|.|||
T Consensus 567 lIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVI 646 (1042)
T KOG0924|consen 567 LIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVI 646 (1042)
T ss_pred EEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEE
Confidence 99999999999999999988776542 22478999999999999999999999999999999999999999999999999
Q ss_pred ecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCCCCCCcccccchhHHHHHHHhc
Q 007931 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKAL 438 (584)
Q Consensus 359 d~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~ 438 (584)
|+|++|.++||+..|++.|...|||++++.||+|||||++||.|||||++..|.+.|.+.++|||+|++|.+++|.|+++
T Consensus 647 D~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLksl 726 (1042)
T KOG0924|consen 647 DTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSL 726 (1042)
T ss_pred ecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCChHHHHHHHHhhcc
Q 007931 439 GIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSI 518 (584)
Q Consensus 439 ~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~l~~ 518 (584)
|++++..|+|+|||+.+.+..++-.|..+|||+..|.|| |+|+.|++||+||.++|||+-++.+||.+|+++|++|||+
T Consensus 727 gV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT-~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSv 805 (1042)
T KOG0924|consen 727 GVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLT-PLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSV 805 (1042)
T ss_pred ChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccc-hhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CcccccCcccHHHHHHHHhhccCCCCCHHHHHHHHHHHHHcCCcHHHHHHhCCCHHHHHHHHH
Q 007931 519 QSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMVRNLI 581 (584)
Q Consensus 519 ~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~~~~a~~ 581 (584)
..+|.+|.+..++++.+|.+|..++|||||+||+|++|.++.++..||.+|+|+.++|++|..
T Consensus 806 p~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~are 868 (1042)
T KOG0924|consen 806 PAVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKARE 868 (1042)
T ss_pred cceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-116 Score=860.54 Aligned_cols=530 Identities=50% Similarity=0.826 Sum_probs=510.6
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchH
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~ 105 (584)
-+.|+++|+|+.+| .+.+.|..||+|.+++++++.+.+|+.++++|+||||||||||||..+...... .-|.|||||+
T Consensus 24 ~Npf~~~p~s~rY~-~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYY-DILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHH-HHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-cceeecCchH
Confidence 34599999999765 688999999999999999999999999999999999999999999998876554 4589999999
Q ss_pred HHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHH
Q 007931 106 LAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLG 185 (584)
Q Consensus 106 la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~ 185 (584)
+++.++|+|++++++..+|..|||+++++++.++ +|-+.|||+|+|++...+++.+..+++||+||||||++.+|.+.+
T Consensus 102 vaamsva~RVadEMDv~lG~EVGysIrfEdC~~~-~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmG 180 (699)
T KOG0925|consen 102 VAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSP-NTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMG 180 (699)
T ss_pred HHHHHHHHHHHHHhccccchhccccccccccCCh-hHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHH
Q 007931 186 LLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (584)
Q Consensus 186 ~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (584)
+++.+...++++|+|+||||+++.+|+.||++.| ++.++| ++|++++|.+.+..||+++++.
T Consensus 181 llk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~P-----------------ll~vpg-~~PvEi~Yt~e~erDylEaair 242 (699)
T KOG0925|consen 181 LLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAP-----------------LLAVPG-THPVEIFYTPEPERDYLEAAIR 242 (699)
T ss_pred HHHHHHhhCCCceEEEeecccchHHHHHHhCCCC-----------------eeecCC-CCceEEEecCCCChhHHHHHHH
Confidence 9999999999999999999999999999999998 999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC-----CcEEEE
Q 007931 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-----KRKVVI 340 (584)
Q Consensus 266 ~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-----~~~vlv 340 (584)
+++.+|..+.+|+||||+++.++|+.+++.+......+........|.++| +.+|.++|++.+.. .+||+|
T Consensus 243 tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 243 TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 999999999999999999999999999999998888888888899999999 67888999887643 489999
Q ss_pred eCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCCCCC
Q 007931 341 STNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGI 420 (584)
Q Consensus 341 aT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~ 420 (584)
+||++|++++|++|.+|||.|+.|+++|||+.+.++++..|||++++.||+|||||++||+||+||+++.|..+|.+.+.
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~ty 398 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTY 398 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchhHHHHHHHhcCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhh
Q 007931 421 PEMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSS 500 (584)
Q Consensus 421 pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l~~~ 500 (584)
|||+|.+|.+++|++|.+|++++.+|+|+|||.++++.+|++.|..++|+|++|++| ++|..|++||+||.+||||+.+
T Consensus 399 peilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT-~lG~imSEFPLdPqLAkmLi~S 477 (699)
T KOG0925|consen 399 PEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLT-SLGEIMSEFPLDPQLAKMLIGS 477 (699)
T ss_pred HHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccc-hhhhhhhcCCCChHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999 6999999999999999999999
Q ss_pred cccCChHHHHHHHHhhccCcccccCc-ccHHHHHHHHhhccCCCCCHHHHHHHHHHHHHcCCcHHHHHHhCCCHHHHHHH
Q 007931 501 NELGCSEEIITISAVLSIQSIWVSGR-GAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMVRN 579 (584)
Q Consensus 501 ~~~~c~~~~l~i~a~l~~~~~f~~~~-~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~~~~a 579 (584)
+.|+|.+|+++|+||||+++.|.+|. +.++.++++++.|++.+|||+|++|+|.+|++++...+||++||||+.+|+.|
T Consensus 478 ~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~A 557 (699)
T KOG0925|consen 478 CEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSA 557 (699)
T ss_pred CCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhH
Confidence 99999999999999999999999999 67888999999999999999999999999999999999999999999999988
Q ss_pred HH
Q 007931 580 LI 581 (584)
Q Consensus 580 ~~ 581 (584)
..
T Consensus 558 d~ 559 (699)
T KOG0925|consen 558 DN 559 (699)
T ss_pred HH
Confidence 64
No 5
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4e-104 Score=859.72 Aligned_cols=527 Identities=47% Similarity=0.726 Sum_probs=490.1
Q ss_pred cCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHH
Q 007931 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 108 (584)
Q Consensus 29 ~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~ 108 (584)
..+.-..++.+..+.+++..||++..+++|++++.+++++||+||||||||||+|+++++.++ ..+..|+|+||||+||
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAA 107 (845)
T COG1643 29 GMDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAA 107 (845)
T ss_pred hhhhhhcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-ccCCeEEecCchHHHH
Confidence 334444555677888999999999999999999999999999999999999999999999988 3445799999999999
Q ss_pred HHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHH
Q 007931 109 QAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLK 188 (584)
Q Consensus 109 ~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~ 188 (584)
.++|+|++++++..+|..|||.+++++..+. +|+|.|+|+|+|+++++.|+.|+.|++|||||+|||++++|+++++++
T Consensus 108 rsvA~RvAeel~~~~G~~VGY~iRfe~~~s~-~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk 186 (845)
T COG1643 108 RSVAERVAEELGEKLGETVGYSIRFESKVSP-RTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLK 186 (845)
T ss_pred HHHHHHHHHHhCCCcCceeeEEEEeeccCCC-CceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchH-HHHHHHH
Q 007931 189 KIQRCRS-DLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDY-VQAAVST 266 (584)
Q Consensus 189 ~~~~~~~-~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~ 266 (584)
.+...++ ++|+|+||||+|.+.|++||++.+ ++.++||+|||+++|.+....++ ++..+..
T Consensus 187 ~~~~~rr~DLKiIimSATld~~rfs~~f~~ap-----------------vi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~ 249 (845)
T COG1643 187 DLLARRRDDLKLIIMSATLDAERFSAYFGNAP-----------------VIEIEGRTYPVEIRYLPEAEADYILLDAIVA 249 (845)
T ss_pred HHHhhcCCCceEEEEecccCHHHHHHHcCCCC-----------------EEEecCCccceEEEecCCCCcchhHHHHHHH
Confidence 9777554 799999999999999999999988 99999999999999999888888 8999999
Q ss_pred HHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCc
Q 007931 267 VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAE 346 (584)
Q Consensus 267 i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e 346 (584)
.+.++..+..|+||||+||.++|+.+++.|.+. .+ .+...|.++||.|+.++|.++|++.+.|++|||+||||||
T Consensus 250 ~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~--~l---~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAE 324 (845)
T COG1643 250 AVDIHLREGSGSILVFLPGQREIERTAEWLEKA--EL---GDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAE 324 (845)
T ss_pred HHHHhccCCCCCEEEECCcHHHHHHHHHHHHhc--cc---cCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccc
Confidence 999999999999999999999999999999881 11 1478999999999999999999999999999999999999
Q ss_pred cccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCCCCCCccccc
Q 007931 347 TSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRS 426 (584)
Q Consensus 347 ~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~ 426 (584)
+|||||+|+||||+|+.|++.||+.+|++.|.+.|+|++++.||+|||||+.||+||+||++++|.. ++.++.|||+|+
T Consensus 325 TSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~-~~~~t~PEIlrt 403 (845)
T COG1643 325 TSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLA-FPEFTLPEILRT 403 (845)
T ss_pred cceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHh-cccCCChhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred chhHHHHHHHhcCCC-CccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCC
Q 007931 427 NLVSCVIQLKALGID-NILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGC 505 (584)
Q Consensus 427 ~l~~~~L~l~~~~~~-~~~~~~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c 505 (584)
+|++++|+++++|++ ++..|+|+|||+..++..|++.|..+||+|++|.+| ++|+.|+.||++|++|+|++.+..++|
T Consensus 404 dLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT-~lG~~ms~lpldprLA~mLl~a~~~g~ 482 (845)
T COG1643 404 DLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLT-PLGKQMSLLPLDPRLARMLLTAPEGGC 482 (845)
T ss_pred chHHHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCC-HHHHHHHhCCCChHHHHHHHhccccCc
Confidence 999999999999995 999999999999999999999999999999999999 799999999999999999999999999
Q ss_pred hHHHHHHHHhhccCc---ccccCcccHH---HHHHHH-hhccC---CCCCHHHHHHHHHHHHHcC------CcHHHHHHh
Q 007931 506 SEEIITISAVLSIQS---IWVSGRGAQK---ELDEAK-LRFAA---AEGDHVTFLNIYKGFLQSC------KSSHWCHKN 569 (584)
Q Consensus 506 ~~~~l~i~a~l~~~~---~f~~~~~~~~---~~~~~~-~~~~~---~~~D~~~~l~~~~~~~~~~------~~~~~c~~~ 569 (584)
++++++|+|+|++++ .|..+.+.++ +.+.++ .++.. ..+||++++++|..|.... ...+||..+
T Consensus 483 ~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~ 562 (845)
T COG1643 483 LGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAM 562 (845)
T ss_pred HHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhh
Confidence 999999999999998 6777776555 333333 33433 5689999999999998876 478899999
Q ss_pred CCCHHHHHHHHH
Q 007931 570 FINYHAMVRNLI 581 (584)
Q Consensus 570 ~l~~~~~~~a~~ 581 (584)
+++.++|.++..
T Consensus 563 ~~~~~~L~~~~~ 574 (845)
T COG1643 563 LFPTKALSRAPW 574 (845)
T ss_pred cCChhHHHhhHH
Confidence 999999998863
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=7.9e-100 Score=853.24 Aligned_cols=508 Identities=39% Similarity=0.649 Sum_probs=467.3
Q ss_pred HHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcc
Q 007931 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (584)
Q Consensus 44 ~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~v 123 (584)
.++.+||+++++++|+.++.+++++||+|+|||||||++|+++++.+.... ..|+|+|||++++.++|++++++++..+
T Consensus 68 ~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~-g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 68 TYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVK-GLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCC-CceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 456789999999999999999999999999999999999999998754333 3689999999999999999999999999
Q ss_pred eeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 124 g~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
|..+||.+++++..+. .++|+|+|||+|++.+..++.++++++|||||||||++++|+++++++.+...++++|+|+||
T Consensus 147 G~~VGY~vrf~~~~s~-~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmS 225 (1294)
T PRK11131 147 GGCVGYKVRFNDQVSD-NTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITS 225 (1294)
T ss_pred cceeceeecCccccCC-CCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEee
Confidence 9999999999998877 899999999999999999999999999999999999999999999999998888899999999
Q ss_pred cccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCc------chHHHHHHHHHHHHHhcCCCC
Q 007931 204 ATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV------SDYVQAAVSTVLLIHDKEPPG 277 (584)
Q Consensus 204 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~ 277 (584)
||++.+.|+++|++.+ ++.++|+.||++++|.+... .+++...+..+..++ ....|
T Consensus 226 ATid~e~fs~~F~~ap-----------------vI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~G 287 (1294)
T PRK11131 226 ATIDPERFSRHFNNAP-----------------IIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPG 287 (1294)
T ss_pred CCCCHHHHHHHcCCCC-----------------EEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCC
Confidence 9999999999998776 88999999999999987543 234555555554444 34678
Q ss_pred CEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEE
Q 007931 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYV 357 (584)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~V 357 (584)
++||||||+++|+.+++.|.+. +.+...|.++||+|++++|.++|+. .|.++||||||++|+|||||+|+||
T Consensus 288 dILVFLpg~~EIe~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 288 DILIFMSGEREIRDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CEEEEcCCHHHHHHHHHHHHhc------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEE
Confidence 9999999999999999999764 2235679999999999999999986 5789999999999999999999999
Q ss_pred EecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCCCCCCcccccchhHHHHHHHh
Q 007931 358 VDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKA 437 (584)
Q Consensus 358 Id~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~ 437 (584)
||+|+.|.+.||+.++++.+...|+|+++|.||+|||||.++|.||+||++++|.. +++++.|||+|++|.+++|++++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L~~viL~lk~ 438 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS-RPEFTDPEILRTNLASVILQMTA 438 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh-hhcccCCccccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred cCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCC-----CCCCHHHHHHhccCCCChhhhHHHHhhcccCChHHHHHH
Q 007931 438 LGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDD-----AKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITI 512 (584)
Q Consensus 438 ~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~i~~~-----~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i 512 (584)
+|++++..|+|++||+.+++.+|++.|..+||||.+ +++| ++|+.|++||+||++||||+.|..++|++|+++|
T Consensus 439 lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT-~lG~~la~LPldPrlakmLl~a~~~~c~~evl~I 517 (1294)
T PRK11131 439 LGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLT-PLGRQLAQLPVDPRLARMVLEAQKHGCVREVMII 517 (1294)
T ss_pred cCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCc-HHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHH
Confidence 999999999999999999999999999999999854 5799 7999999999999999999999999999999999
Q ss_pred HHhhccCcccccCcccHHHHHHHHhhccCCCCCHHHHHHHHHHHHHcC------CcHHHHHHhCCCHHHHHHHHH
Q 007931 513 SAVLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSC------KSSHWCHKNFINYHAMVRNLI 581 (584)
Q Consensus 513 ~a~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~~~~a~~ 581 (584)
+|+||++++|..|.+.+++++.++++|....|||++++|+|+.|.+.. ..++||++||||+.+|+++.+
T Consensus 518 aA~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~ 592 (1294)
T PRK11131 518 TSALSIQDPRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQD 592 (1294)
T ss_pred HHHHcCCCcccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999988999999999999999999999999997632 135899999999999999875
No 7
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=2.2e-101 Score=833.08 Aligned_cols=528 Identities=38% Similarity=0.631 Sum_probs=486.4
Q ss_pred CCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCC-eEEEEeCchHHHHHHHH
Q 007931 34 SIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGG-RVIACTQPRRLAVQAVA 112 (584)
Q Consensus 34 ~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~-~~I~v~~~r~la~~~~~ 112 (584)
..+..|+++.+.|.+||+++++++|++++.++++++|+|+||||||||+||++++..+..++ ..|+|||||+++|.++|
T Consensus 157 ~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvA 236 (924)
T KOG0920|consen 157 KKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVA 236 (924)
T ss_pred hhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999998655443 34999999999999999
Q ss_pred HHHHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH
Q 007931 113 SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (584)
Q Consensus 113 ~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (584)
+|++.+++...|..|||+++.++..+. .+.+.|||.|.|++.+..++.+.+++|||+||+|||++++|+++.+++.++.
T Consensus 237 eRVa~ER~~~~g~~VGYqvrl~~~~s~-~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~ 315 (924)
T KOG0920|consen 237 ERVAKERGESLGEEVGYQVRLESKRSR-ETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLP 315 (924)
T ss_pred HHHHHHhccccCCeeeEEEeeecccCC-ceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhh
Confidence 999999999999999999999999998 6999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcc---------------
Q 007931 193 CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS--------------- 257 (584)
Q Consensus 193 ~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------- 257 (584)
.++++|+|+||||+|++.|.+||++++ ++.++|++|||..+|+++...
T Consensus 316 ~~p~LkvILMSAT~dae~fs~YF~~~p-----------------vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~ 378 (924)
T KOG0920|consen 316 RNPDLKVILMSATLDAELFSDYFGGCP-----------------VITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGP 378 (924)
T ss_pred hCCCceEEEeeeecchHHHHHHhCCCc-----------------eEeecCCCcchHHHHHHHHHHHhccccccccccccc
Confidence 999999999999999999999999998 999999999999988764210
Q ss_pred --h--------------HHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCH
Q 007931 258 --D--------------YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSR 321 (584)
Q Consensus 258 --~--------------~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~ 321 (584)
+ ..+.+...+..++.....|.||||+||.++|..+++.|....... +..++.+.++||.|+.
T Consensus 379 ~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~--~~~~~~ilplHs~~~s 456 (924)
T KOG0920|consen 379 ERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFA--DSLKFAILPLHSSIPS 456 (924)
T ss_pred ccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccc--cccceEEEeccccCCh
Confidence 0 123455666777777778999999999999999999997643211 2246899999999999
Q ss_pred HHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcE
Q 007931 322 AEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGK 401 (584)
Q Consensus 322 ~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~ 401 (584)
++|+.||...+.|.+|||+|||+||+|||||||.||||+|+.|++.||+..++..+...|+|++++.||+|||||.++|.
T Consensus 457 ~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~ 536 (924)
T KOG0920|consen 457 EEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGI 536 (924)
T ss_pred HHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccChHHHhhhCCCCCCCcccccchhHHHHHHHhcCCCCccCC--CCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHH
Q 007931 402 CYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF--DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSP 479 (584)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~--~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~ 479 (584)
||+||++..|+..+..+++|||+|.+|.+++|++|.++...+..| ..++||+..++..|+..|..+||++.++++| |
T Consensus 537 cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT-~ 615 (924)
T KOG0920|consen 537 CYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELT-P 615 (924)
T ss_pred eEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccch-H
Confidence 999999999999555599999999999999999999988877765 5689999999999999999999999999999 8
Q ss_pred HHHHhccCCCChhhhHHHHhhcccCChHHHHHHHHhhccCcccccCcccHHHHHHHHhhccCCC-CCHHHHHHHHHHHHH
Q 007931 480 TGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDEAKLRFAAAE-GDHVTFLNIYKGFLQ 558 (584)
Q Consensus 480 lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~~~~-~D~~~~l~~~~~~~~ 558 (584)
||+.++++|+||++||+++.|+.|+|++++++|||+|++++||..|.++++.+++++..|.... |||++++++|+.|..
T Consensus 616 LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~ 695 (924)
T KOG0920|consen 616 LGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWRE 695 (924)
T ss_pred HHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988665 999999999999988
Q ss_pred cCC-----cHHHHHHhCCCHHHHHHHHHh
Q 007931 559 SCK-----SSHWCHKNFINYHAMVRNLIW 582 (584)
Q Consensus 559 ~~~-----~~~~c~~~~l~~~~~~~a~~~ 582 (584)
..+ ..+||++|||+..+|++..++
T Consensus 696 ~~~~~~~~~~~fc~~~fLs~~~l~~i~~l 724 (924)
T KOG0920|consen 696 ILRSGPSAEKDFCEENFLSSNTLQEISSL 724 (924)
T ss_pred HHhccchHHHHHHHHhhccHHHHHHHHHH
Confidence 643 468999999999999987653
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7e-98 Score=840.92 Aligned_cols=507 Identities=40% Similarity=0.676 Sum_probs=468.7
Q ss_pred HHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcc
Q 007931 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (584)
Q Consensus 44 ~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~v 123 (584)
.++.+||+++++++|++++.+++++||+|+|||||||++|+++++.+....+ .|+|+|||++++.++++|+++++|..+
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~-~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHG-LIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCc-eEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 4567899999999999999999999999999999999999999987654333 689999999999999999999999999
Q ss_pred eeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 124 g~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
|..|||.+++++..+. +++|+|+|+|+|++.+..++.+.++++|||||+|||++++|+++++++.+...++++|+|+||
T Consensus 140 G~~VGY~vR~~~~~s~-~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmS 218 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSS-NTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITS 218 (1283)
T ss_pred ceEEeeEEcCCcccCC-CceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEe
Confidence 9999999999999888 899999999999999999999999999999999999999999999999998888999999999
Q ss_pred cccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCc------chHHHHHHHHHHHHHhcCCCC
Q 007931 204 ATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV------SDYVQAAVSTVLLIHDKEPPG 277 (584)
Q Consensus 204 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~ 277 (584)
||++.+.|++||++.+ ++.++|+.||++++|.+... .++.+.....+..+.. ...|
T Consensus 219 ATld~~~fa~~F~~ap-----------------vI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~G 280 (1283)
T TIGR01967 219 ATIDPERFSRHFNNAP-----------------IIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPG 280 (1283)
T ss_pred CCcCHHHHHHHhcCCC-----------------EEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCC
Confidence 9999999999998776 89999999999999976432 2344555555555543 3568
Q ss_pred CEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEE
Q 007931 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYV 357 (584)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~V 357 (584)
+||||+||+++|+.+++.|.+. ..+++.+.++||+|+.++|.++|+.+ +.++||||||++|+|||||+|+||
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~------~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKR------NLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhc------CCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEE
Confidence 9999999999999999999865 22357899999999999999999875 358999999999999999999999
Q ss_pred EecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCCCCCCcccccchhHHHHHHHh
Q 007931 358 VDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKA 437 (584)
Q Consensus 358 Id~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~ 437 (584)
||+|+.|.+.||+.++++.+.+.|+|+++|.||+|||||.++|+||+||++++|.. +++++.|||+|++|.+++|++++
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~ 431 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLA 431 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred cCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCC---CCCHHHHHHhccCCCChhhhHHHHhhcccCChHHHHHHHH
Q 007931 438 LGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISA 514 (584)
Q Consensus 438 ~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~i~~~~---~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i~a 514 (584)
+|+.++..|+|++||+..++..|++.|..+||||++| ++| ++|+.|++||++|++||||+.|..++|++++++|+|
T Consensus 432 lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT-~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA 510 (1283)
T TIGR01967 432 LRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLT-PIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIAS 510 (1283)
T ss_pred cCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCcccc-HHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999988 799 799999999999999999999999999999999999
Q ss_pred hhccCcccccCcccHHHHHHHHhhccCCCCCHHHHHHHHHHHHHcC------CcHHHHHHhCCCHHHHHHHH
Q 007931 515 VLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSC------KSSHWCHKNFINYHAMVRNL 580 (584)
Q Consensus 515 ~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~~~~a~ 580 (584)
+|+++++|..|.+.++++++++++|....|||++++|+|+.|.+.. ..++||++||||+.+|+++.
T Consensus 511 ~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~ 582 (1283)
T TIGR01967 511 ALSIQDPRERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQ 582 (1283)
T ss_pred HHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHH
Confidence 9999999999999889999999999999999999999999997642 23689999999999999886
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-98 Score=768.74 Aligned_cols=524 Identities=41% Similarity=0.647 Sum_probs=482.2
Q ss_pred hhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCC----CeEEEEeCchHHHHHHHHHHH
Q 007931 40 ASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG----GRVIACTQPRRLAVQAVASRV 115 (584)
Q Consensus 40 ~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~----~~~I~v~~~r~la~~~~~~~~ 115 (584)
.++.+.|..|||.....+|+++|..|.++||||.||||||||+|||++++++... +..|.+|||||+|+...|+|+
T Consensus 246 ~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRV 325 (1172)
T KOG0926|consen 246 AEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRV 325 (1172)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999998765 668999999999999999999
Q ss_pred HHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhc-
Q 007931 116 AEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR- 194 (584)
Q Consensus 116 ~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~- 194 (584)
+.+++. .|..|||++|++..... .+.|.|+|+|+|++.+.+|.+|.+|++|||||||||++++|.+.++|.++.+++
T Consensus 326 a~EL~~-~~~eVsYqIRfd~ti~e-~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~ 403 (1172)
T KOG0926|consen 326 AFELGV-LGSEVSYQIRFDGTIGE-DTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQ 403 (1172)
T ss_pred HHHhcc-CccceeEEEEeccccCC-CceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHH
Confidence 999998 89999999999999988 999999999999999999999999999999999999999999999999987643
Q ss_pred ---------CCceEEEEecccChHHHHH---HhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHH
Q 007931 195 ---------SDLRLIISSATIEAKSMSA---FFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQA 262 (584)
Q Consensus 195 ---------~~~~vi~~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 262 (584)
..+|+|+||||+.+.+|.+ .|. ..|+++.++.|+|||.+||......||+..
T Consensus 404 k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFp----------------i~pPlikVdARQfPVsIHF~krT~~DYi~e 467 (1172)
T KOG0926|consen 404 KYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFP----------------IPPPLIKVDARQFPVSIHFNKRTPDDYIAE 467 (1172)
T ss_pred HHhhhhcccCceeEEEEeeeEEecccccCceecC----------------CCCceeeeecccCceEEEeccCCCchHHHH
Confidence 3789999999998877763 333 234599999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhh----------------------------------------
Q 007931 263 AVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART---------------------------------------- 302 (584)
Q Consensus 263 ~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~---------------------------------------- 302 (584)
+......||...++|.||||+.|+.+++.+++.|++.++.
T Consensus 468 AfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~ 547 (1172)
T KOG0926|consen 468 AFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYE 547 (1172)
T ss_pred HHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhccccc
Confidence 9999999999999999999999999999999999987441
Q ss_pred -----------c---------------------------------------cCCCCCeEEEEecCCCCHHHHhcccCCCC
Q 007931 303 -----------S---------------------------------------KKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (584)
Q Consensus 303 -----------~---------------------------------------~~~~~~~~v~~lh~~l~~~~r~~i~~~~~ 332 (584)
. ......+.|+++|+-|+.++|.+||+..+
T Consensus 548 ~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p 627 (1172)
T KOG0926|consen 548 SDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVP 627 (1172)
T ss_pred chhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCC
Confidence 0 00112456999999999999999999999
Q ss_pred CCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHh
Q 007931 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFV 412 (584)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~ 412 (584)
.|.+-||||||+||+++|||+|+||||+|..|++.||..+|++.+...|+|++++.||+|||||++||+|||||+...|+
T Consensus 628 ~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~ 707 (1172)
T KOG0926|consen 628 KGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFS 707 (1172)
T ss_pred CCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCcccccchhHHHHHHHhcCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChh
Q 007931 413 KEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPM 492 (584)
Q Consensus 413 ~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~ 492 (584)
+.++++..|||++.+.++++|++|+++|+++.+|||++||.+.+++.|...|..+||||.+|.+| +||+.||.||+.|+
T Consensus 708 ~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT-~lGk~mS~FPlsPr 786 (1172)
T KOG0926|consen 708 NDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLT-KLGKAMSLFPLSPR 786 (1172)
T ss_pred cchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcc-cccchhcccccChh
Confidence 88999999999999999999999999999999999999999999999999999999999999999 69999999999999
Q ss_pred hhHHHHhhcccCChHHHHHHHHhhccCcccccCc-------------cc-------------------HHHHHHHHhhcc
Q 007931 493 ISKMILSSNELGCSEEIITISAVLSIQSIWVSGR-------------GA-------------------QKELDEAKLRFA 540 (584)
Q Consensus 493 ~~~~l~~~~~~~c~~~~l~i~a~l~~~~~f~~~~-------------~~-------------------~~~~~~~~~~~~ 540 (584)
++|||+.+.+.+|+.-.+.++++||+..+|+.-. ++ +.....++.+|.
T Consensus 787 fsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~ 866 (1172)
T KOG0926|consen 787 FSKMLATSDQHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFS 866 (1172)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999987775311 00 011123456677
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHHHhCCCHHHHHHHHHh
Q 007931 541 AAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMVRNLIW 582 (584)
Q Consensus 541 ~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~~~~a~~~ 582 (584)
...||-++++.+...+...++..+||..|||..++|.++.++
T Consensus 867 ~l~sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KL 908 (1172)
T KOG0926|consen 867 NLDSDALVLLSAVSAAEYAENGMRFCEANGLRLKAMEEVRKL 908 (1172)
T ss_pred cCCccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHHHHHHH
Confidence 677999999999999999888888999999999999999875
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.7e-85 Score=722.37 Aligned_cols=445 Identities=36% Similarity=0.588 Sum_probs=410.0
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEe
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg 128 (584)
|||+.++++|++++.+++++|++|+|||||||++|+++++... .+ ..|+|++||++++.+++++++++++..+|..+|
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~-~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IG-GKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cC-CeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 7999999999999999999999999999999999999998753 22 358899999999999999999999999999999
Q ss_pred eEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEecccC
Q 007931 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIE 207 (584)
Q Consensus 129 ~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~~ 207 (584)
|.++++...+. .++|+|+|+|+|++.+..++.++++++|||||+|||++++|+.+++++.+.. .++++|+|+||||++
T Consensus 79 y~vr~~~~~s~-~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 79 YRVRGENKVSR-RTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred EEEccccccCC-CCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 99999887776 8999999999999999988889999999999999999999999998887765 578999999999999
Q ss_pred hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHH-HHHHHHHhcCCCCCEEEEeCcH
Q 007931 208 AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAV-STVLLIHDKEPPGDILVFLTGQ 286 (584)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~iLVF~~~~ 286 (584)
.+.+.+||++.+ ++.++|+.||++++|......++....+ ..+..+. ....|++||||||+
T Consensus 158 ~~~l~~~l~~~~-----------------vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l-~~~~g~iLVFlpg~ 219 (819)
T TIGR01970 158 GERLSSLLPDAP-----------------VVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHAL-ASETGSILVFLPGQ 219 (819)
T ss_pred HHHHHHHcCCCc-----------------EEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHH-HhcCCcEEEEECCH
Confidence 988999998766 8889999999999998776555544333 2333333 33468999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccce
Q 007931 287 DDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR 366 (584)
Q Consensus 287 ~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~ 366 (584)
++++.+++.|.+.+. .++.+.++||+|++++|.++++.|++|+++||||||++|+|||||+|++|||+|+.|.+
T Consensus 220 ~eI~~l~~~L~~~~~------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~ 293 (819)
T TIGR01970 220 AEIRRVQEQLAERLD------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVA 293 (819)
T ss_pred HHHHHHHHHHHhhcC------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccc
Confidence 999999999987531 37899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCCCCCCcccccchhHHHHHHHhcCCCCccCC
Q 007931 367 FYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF 446 (584)
Q Consensus 367 ~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~ 446 (584)
.||+.++++.|.+.|+|+++|.||+|||||.++|.||+||+++++.. +.++..|||++.+|.+++|+++.+|+.++..|
T Consensus 294 ~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~ 372 (819)
T TIGR01970 294 RFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQR-LPAQDEPEILQADLSGLALELAQWGAKDPSDL 372 (819)
T ss_pred ccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCChhhC
Confidence 99999999999999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCChHHHHHHHHhhccCccc
Q 007931 447 DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIW 522 (584)
Q Consensus 447 ~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~l~~~~~f 522 (584)
+|++||+..++..|++.|..+||||++|+|| ++|+.|++||++|++||||+.|..++|.+++++|+|+|+.++++
T Consensus 373 ~~l~~P~~~~i~~a~~~L~~lgald~~~~lT-~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~ 447 (819)
T TIGR01970 373 RWLDAPPSVALAAARQLLQRLGALDAQGRLT-AHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLP 447 (819)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCCCCCCCcC-HHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999 79999999999999999999999999999999999999999864
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.9e-82 Score=702.67 Aligned_cols=444 Identities=35% Similarity=0.579 Sum_probs=405.4
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEE
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~v 127 (584)
+||+++++++|++++.+++++|++|||||||||++|+++++..... + .|+|++||++++.+++++++++++..+|..+
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~-~-~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGIN-G-KIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcC-C-eEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 5999999999999999999999999999999999999999875432 3 4789999999999999999999999999999
Q ss_pred eeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEeccc
Q 007931 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (584)
Q Consensus 128 g~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~ 206 (584)
||.++++..... .++|+|+|+|+|++.+..++.+.++++|||||+|||++++|+.+++++.+.. .++++|+|+||||+
T Consensus 81 Gy~vr~~~~~~~-~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl 159 (812)
T PRK11664 81 GYRMRAESKVGP-NTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATL 159 (812)
T ss_pred EEEecCccccCC-CCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCC
Confidence 999999987777 7899999999999999988889999999999999999999999998887765 57899999999999
Q ss_pred ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcH
Q 007931 207 EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQ 286 (584)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~ 286 (584)
+.+.+++||++.+ ++.++|+.||++.+|...+..++.+..+...+........|++||||||+
T Consensus 160 ~~~~l~~~~~~~~-----------------~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~ 222 (812)
T PRK11664 160 DNDRLQQLLPDAP-----------------VIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGV 222 (812)
T ss_pred CHHHHHHhcCCCC-----------------EEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCH
Confidence 9989999997665 78899999999999988776666554443333333334578999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccce
Q 007931 287 DDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR 366 (584)
Q Consensus 287 ~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~ 366 (584)
++++.+++.|.+... .++.+.++||+|+.++|.++++.|++|+++||||||++|+|||||+|++|||+|+.|..
T Consensus 223 ~ei~~l~~~L~~~~~------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~ 296 (812)
T PRK11664 223 GEIQRVQEQLASRVA------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVA 296 (812)
T ss_pred HHHHHHHHHHHHhcc------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccc
Confidence 999999999986421 26889999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCCCCCCcccccchhHHHHHHHhcCCCCccCC
Q 007931 367 FYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF 446 (584)
Q Consensus 367 ~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~ 446 (584)
.||+..+++.|.+.|+|+++|.||+|||||.++|.||+||+++++.. ++++..|||++++|++++|.++++|+.++..|
T Consensus 297 ~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~ 375 (812)
T PRK11664 297 RFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAER-AAAQSEPEILHSDLSGLLLELLQWGCHDPAQL 375 (812)
T ss_pred cccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhh-CccCCCCceeccchHHHHHHHHHcCCCCHHhC
Confidence 99999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCChH--HHHHHHHhhccC
Q 007931 447 DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSE--EIITISAVLSIQ 519 (584)
Q Consensus 447 ~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~--~~l~i~a~l~~~ 519 (584)
+|+|||+..++..|++.|..+||+|++|+|| ++|+.|++||++|++|+||+.|..++|.. .+..++|+|+.+
T Consensus 376 ~~ld~P~~~~~~~A~~~L~~lgald~~g~lT-~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~ 449 (812)
T PRK11664 376 SWLDQPPAAALAAAKRLLQQLGALDGQGRLT-ARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEP 449 (812)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcC-HHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccC
Confidence 9999999999999999999999999999999 79999999999999999999999998753 677788888765
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.1e-57 Score=490.35 Aligned_cols=395 Identities=18% Similarity=0.258 Sum_probs=300.1
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcC-----cc--------CCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 007931 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG-----WA--------DGGRVIACTQPRRLAVQAVASRVAEEMG 120 (584)
Q Consensus 54 ~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~-----~~--------~~~~~I~v~~~r~la~~~~~~~~~~~~~ 120 (584)
.|++++..+.+++++|++|+||||||+++||++++.. +. ...+.++|++||+-++.+++.++.+..|
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 4567899999999999999999999999999987631 11 1223466777777777778888777665
Q ss_pred CcceeEEeeEeeccCc------CCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhc
Q 007931 121 VKVGEEVGYTIRFEDF------TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR 194 (584)
Q Consensus 121 ~~vg~~vg~~~~~~~~------~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~ 194 (584)
......+...++++.. ......+|+++|++. ..+.+.++++|||||||||...+|.++.+++.+...
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~- 320 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK- 320 (675)
T ss_pred ccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh-
Confidence 4211111112222221 111246899999763 224588999999999999999999999998866543
Q ss_pred CCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc-ccceEEecCCCc-----chHHHHHHHH
Q 007931 195 SDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-FNVQIHYVEEPV-----SDYVQAAVST 266 (584)
Q Consensus 195 ~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~-----~~~~~~~~~~ 266 (584)
..|+++||||+ +.+.+.+||++.. .+.++++. +|++.+|..... .++.+.....
T Consensus 321 -~rq~ILmSATl~~dv~~l~~~~~~p~-----------------~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 321 -IRSLFLMTATLEDDRDRIKEFFPNPA-----------------FVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred -cCEEEEEccCCcHhHHHHHHHhcCCc-----------------EEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 23899999999 5678889997655 78888885 999999876542 1222222222
Q ss_pred HHHHHh---cCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCC-CCCCcEEEEeC
Q 007931 267 VLLIHD---KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT-PRGKRKVVIST 342 (584)
Q Consensus 267 i~~~~~---~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~-~~g~~~vlvaT 342 (584)
+...+. ...++++||||||+++++.+++.|.+.. +++.+.++||+|++.+ ++++.| ++|+++|||||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVAT 453 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIIST 453 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH--HHHHHHhccCceeEEecc
Confidence 222222 2345789999999999999999997652 3688999999999864 333444 68999999999
Q ss_pred CCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCCCCCCc
Q 007931 343 NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPE 422 (584)
Q Consensus 343 ~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pe 422 (584)
|+||+|||||+|++|||+|+++.+. +..+. ..|+|+++|.||+|||||.++|.||+||+++++. ++++
T Consensus 454 dIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~------pI~r 521 (675)
T PHA02653 454 PYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK------PIKR 521 (675)
T ss_pred ChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH------HHHH
Confidence 9999999999999999999877653 33343 3499999999999999999999999999998741 1333
Q ss_pred ccccchhHHHHHHHhcCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHH--HHHhccCCCChhhhHHHHhh
Q 007931 423 MQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPT--GFQVAEIPLEPMISKMILSS 500 (584)
Q Consensus 423 i~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~l--G~~~~~~pl~p~~~~~l~~~ 500 (584)
+...+|.+++|+++++|++.. .+.|++||+.+++..|++.|..+||+|+ ++| .+ |+.++.+ +.||+++.|
T Consensus 522 i~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~-~l~~~~~~~~~----~~~k~~~~g 593 (675)
T PHA02653 522 IDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWY-EILSNYYVNML----EYAKIYVKG 593 (675)
T ss_pred HhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhh-hhhccccHHHH----HHhHHHhcc
Confidence 333348999999999999554 4559999999999999999999998865 899 59 9999999 999999988
Q ss_pred cc
Q 007931 501 NE 502 (584)
Q Consensus 501 ~~ 502 (584)
..
T Consensus 594 ~~ 595 (675)
T PHA02653 594 GI 595 (675)
T ss_pred cH
Confidence 64
No 13
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=2.1e-58 Score=480.43 Aligned_cols=521 Identities=33% Similarity=0.520 Sum_probs=442.9
Q ss_pred CccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCe---EEEEeCchHHHHHHH
Q 007931 35 IGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGR---VIACTQPRRLAVQAV 111 (584)
Q Consensus 35 ~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~---~I~v~~~r~la~~~~ 111 (584)
+.+.+....++|.+||+..+++.|++++..+++++|.+.||+||||++.+++++...+.+.. -+++++||++.++.+
T Consensus 363 ~d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisi 442 (1282)
T KOG0921|consen 363 RDEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISL 442 (1282)
T ss_pred cccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHH
Confidence 45677888999999999999999999999999999999999999999999999986655432 378999999999999
Q ss_pred HHHHHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHH
Q 007931 112 ASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ 191 (584)
Q Consensus 112 ~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~ 191 (584)
+++++++.+..+|..+||++|+++........|.+||.|.+++.+.+. +..++|+|+||.|||.+++|+++.+++.+.
T Consensus 443 aerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~ 520 (1282)
T KOG0921|consen 443 AERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMI 520 (1282)
T ss_pred HHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhh
Confidence 999999999999999999999999998778999999999999987543 778999999999999999999999999999
Q ss_pred HhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCC-----------------
Q 007931 192 RCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEE----------------- 254 (584)
Q Consensus 192 ~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------- 254 (584)
...+++++++||||+|.+.|..||+..+ .+.+.++++|+..+|+..
T Consensus 521 ~ty~dl~v~lmsatIdTd~f~~~f~~~p-----------------~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~ 583 (1282)
T KOG0921|consen 521 STYRDLRVVLMSATIDTDLFTNFFSSIP-----------------DVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKR 583 (1282)
T ss_pred ccchhhhhhhhhcccchhhhhhhhcccc-----------------ceeeccccccHHHHHHHHhhhhhhccCCCcCccch
Confidence 9999999999999999999999999988 445555555555444321
Q ss_pred -----Ccc----------------hHH----------------HHHHH-HHHHHHhcCCCCCEEEEeCcHHHHHHHHHHH
Q 007931 255 -----PVS----------------DYV----------------QAAVS-TVLLIHDKEPPGDILVFLTGQDDIDATIQLL 296 (584)
Q Consensus 255 -----~~~----------------~~~----------------~~~~~-~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L 296 (584)
... .+. ..+.+ .+..+....-.|.|+||+|+++.+..++..|
T Consensus 584 k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~l 663 (1282)
T KOG0921|consen 584 KKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRL 663 (1282)
T ss_pred hhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhh
Confidence 000 000 01111 2223334455689999999999999999988
Q ss_pred HHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCccc
Q 007931 297 TEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIEN 376 (584)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~ 376 (584)
..+- ...+...+.++++|+.++..++.+|++..+.|..|+|++|++++++++|.++.+|||.+..+.+.|-....+..
T Consensus 664 l~~~--~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~ 741 (1282)
T KOG0921|consen 664 LEHQ--EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTH 741 (1282)
T ss_pred hhhh--hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceee
Confidence 7652 22344578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCCCCCCcccccchhHHHHHHHhcCCCCccCC--CCCCCCCH
Q 007931 377 LVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF--DWPASPPP 454 (584)
Q Consensus 377 l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~--~~~~~p~~ 454 (584)
+.+.|.|+.+..||.||+||.++|.|+++++...|+. +..+..||+.+.++.+..|..|.+....+..| --+.||+.
T Consensus 742 ~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~-l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~ 820 (1282)
T KOG0921|consen 742 YATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEA-LEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPY 820 (1282)
T ss_pred eeeecccccchHhhcccCceecccccccccHHHHHHH-HHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCch
Confidence 9999999999999999999999999999999999999 99999999999999999999998876666555 45899999
Q ss_pred HHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCChHHHHHHHHhhccCcccccCcccHHHHHH
Q 007931 455 EAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDE 534 (584)
Q Consensus 455 ~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~l~~~~~f~~~~~~~~~~~~ 534 (584)
+++..+-..|..++++|.++.+| |+|+.++++|+.|.++|+++.+..++|..-+..+|+.+++..+|..-.........
T Consensus 821 dav~e~e~~l~~m~~ld~n~elt-~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g 899 (1282)
T KOG0921|consen 821 DAVIEAEAVLREMGALDANDELT-PLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSG 899 (1282)
T ss_pred hhccCchHHHHHhhhhhccCccc-chhhhhhhccCcccccceeeechhhccchhhhhhhccccccccccccccccccccc
Confidence 99999999999999999999999 89999999999999999999999999999999999999998776643322222222
Q ss_pred HHhhccCC------CCCHHHHHHHHHHHHHcCCcHHHHHHhCCCHHHHHH
Q 007931 535 AKLRFAAA------EGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMVR 578 (584)
Q Consensus 535 ~~~~~~~~------~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~~~~ 578 (584)
.++.|++. .+||.+.+..|+.|..+...++||.+++++...|..
T Consensus 900 ~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~ 949 (1282)
T KOG0921|consen 900 TQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKM 949 (1282)
T ss_pred chhhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhh
Confidence 33444433 246666666667776665578899999998777653
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=8e-46 Score=413.15 Aligned_cols=455 Identities=17% Similarity=0.169 Sum_probs=303.0
Q ss_pred ccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHH
Q 007931 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (584)
Q Consensus 28 ~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la 107 (584)
.|+++++++.....+.+ ....++.+|.+++..+.++++++++||||||||.++...+++.. ..++++|+++|+++|+
T Consensus 2 ~~~~~~l~~~~~~~~~~--~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l-~~~~k~v~i~P~raLa 78 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG--NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETF-LAGLKSIYIVPLRSLA 78 (674)
T ss_pred cHhhcCCCHHHHHHHhh--CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHH-HhCCcEEEEechHHHH
Confidence 47788888877665544 34457999999999999999999999999999988777766553 3456789999999998
Q ss_pred HHHHHHHHH-HHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCc--cchhHH
Q 007931 108 VQAVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS--ISTDIL 183 (584)
Q Consensus 108 ~~~~~~~~~-~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~--~~~d~l 183 (584)
.+...+.-. ...|..++..+|....... ... ..+|+++||+++...+..++. +.++++||+||+|..+ .....+
T Consensus 79 ~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-~~~-~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~l 156 (674)
T PRK01172 79 MEKYEELSRLRSLGMRVKISIGDYDDPPD-FIK-RYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTL 156 (674)
T ss_pred HHHHHHHHHHhhcCCeEEEEeCCCCCChh-hhc-cCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHH
Confidence 875433211 2345566555553221111 112 579999999999888776655 8999999999999543 123345
Q ss_pred HHHHHHHHHhcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHH
Q 007931 184 LGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQA 262 (584)
Q Consensus 184 ~~~l~~~~~~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 262 (584)
..++.++...+++.|+|+||||+ |..++++|++........++.+. ...+. +.... +.+...... ..
T Consensus 157 e~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl-------~~~i~---~~~~~-~~~~~~~~~-~~ 224 (674)
T PRK01172 157 ETVLSSARYVNPDARILALSATVSNANELAQWLNASLIKSNFRPVPL-------KLGIL---YRKRL-ILDGYERSQ-VD 224 (674)
T ss_pred HHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCe-------EEEEE---ecCee-eeccccccc-cc
Confidence 55666666667889999999999 89999999986543222222111 00000 00001 111100000 00
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccC----------------CCCCeEEEEecCCCCHHHHhc
Q 007931 263 AVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK----------------NSSGLIILPLYSGLSRAEQEQ 326 (584)
Q Consensus 263 ~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~----------------~~~~~~v~~lh~~l~~~~r~~ 326 (584)
....+.... ..++++||||+++++++.++..|.+....... ......|.+|||+|++++|..
T Consensus 225 ~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 225 INSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred HHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 111122211 35688999999999999999999876432110 001235899999999999999
Q ss_pred ccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCC---CcEEE
Q 007931 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCY 403 (584)
Q Consensus 327 i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~ 403 (584)
+++.|++|.++|||||+++++|+|+|+..+||+ |. ..|+.. ...++|..+|.||+|||||.+ .|.++
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~ 372 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DI---TRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIGY 372 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceEEEEc-Cc---eEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceEE
Confidence 999999999999999999999999999888775 22 234321 123789999999999999983 67777
Q ss_pred EccCh----HHHhhhCCCCCCCccccc------chhHHHHHHHhcCC----CCccCC---CCC--CCCC---HHHHHHHH
Q 007931 404 RLYTE----EYFVKEIPAEGIPEMQRS------NLVSCVIQLKALGI----DNILGF---DWP--ASPP---PEAMIRAL 461 (584)
Q Consensus 404 ~l~~~----~~~~~~~~~~~~pei~r~------~l~~~~L~l~~~~~----~~~~~~---~~~--~~p~---~~~~~~al 461 (584)
.+... +.+.+.+...+.| ..+ .+...+|...+.|. .++.+| .|+ ..++ .+.++.++
T Consensus 373 i~~~~~~~~~~~~~~l~~~~~p--i~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l 450 (674)
T PRK01172 373 IYAASPASYDAAKKYLSGEPEP--VISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSL 450 (674)
T ss_pred EEecCcccHHHHHHHHcCCCCc--eeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHH
Confidence 66542 2233323222222 111 12222445555543 333333 343 3222 46789999
Q ss_pred HHHHHcCCccCCC--CCCHHHHHHhccCCCChhhhHHHHhhcccC-ChHHHHHHHH
Q 007931 462 EVLYSLGVLDDDA--KLTSPTGFQVAEIPLEPMISKMILSSNELG-CSEEIITISA 514 (584)
Q Consensus 462 ~~L~~~g~i~~~~--~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~-c~~~~l~i~a 514 (584)
+.|...|+|++++ .+| ++|+.++.+|++|..++.+..+..-. ....++.+++
T Consensus 451 ~~L~~~~~i~~~~~~~~t-~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~ 505 (674)
T PRK01172 451 KFLKENGFIKGDVTLRAT-RLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYIS 505 (674)
T ss_pred HHHHHCCCcccCCcEeEC-HHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhh
Confidence 9999999998654 569 69999999999999999998887543 3334444443
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.1e-45 Score=409.36 Aligned_cols=463 Identities=21% Similarity=0.218 Sum_probs=313.3
Q ss_pred ccCCCCCCccchhhHHHHhcCCCchHHHHHHHHH-HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHH
Q 007931 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (584)
Q Consensus 28 ~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~-l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~l 106 (584)
.|.++++++.....+.+... --++..|.+.+.. +.+++++++++|||||||......++... ..++++||++|+++|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~-~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l-~~~~kal~i~P~raL 79 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGI-EELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI-ARGGKALYIVPLRAL 79 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCC-CcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHH
Confidence 47888888877766655322 3356677776666 78899999999999999966655554442 356789999999999
Q ss_pred HHHHHHHHHH-HHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCC-CCCCCcEEEEeCCCcCc--cchhH
Q 007931 107 AVQAVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERS--ISTDI 182 (584)
Q Consensus 107 a~~~~~~~~~-~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~--~~~d~ 182 (584)
+.|...+.-. ...|..++..+|....... ... ..+|+|+||+++...+.+.. +++++++||+||+|.-+ .....
T Consensus 80 a~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-~l~-~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~ 157 (737)
T PRK02362 80 ASEKFEEFERFEELGVRVGISTGDYDSRDE-WLG-DNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPT 157 (737)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCcCcccc-ccC-CCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHH
Confidence 9986554321 1236777777774322211 112 57999999999988776543 48999999999999432 22334
Q ss_pred HHHHHHHHHHhcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc-cccceEEecCCCcchHH
Q 007931 183 LLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-GFNVQIHYVEEPVSDYV 260 (584)
Q Consensus 183 l~~~l~~~~~~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~ 260 (584)
+..++.++....++.|+|++|||+ |.+.+++|++.......+++++.... +..... .++...........
T Consensus 158 le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~-----v~~~~~~~~~~~~~~~~~~~~--- 229 (737)
T PRK02362 158 LEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREG-----VFYGGAIHFDDSQREVEVPSK--- 229 (737)
T ss_pred HHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeee-----EecCCeeccccccccCCCccc---
Confidence 555666666677889999999999 88999999987654444444332111 000000 00101111111111
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhc----------------cC-----------CCCCeEEE
Q 007931 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS----------------KK-----------NSSGLIIL 313 (584)
Q Consensus 261 ~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~----------------~~-----------~~~~~~v~ 313 (584)
......+.... ..++++||||+++++++.+++.|....... .. ..-...|+
T Consensus 230 ~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva 307 (737)
T PRK02362 230 DDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAA 307 (737)
T ss_pred hHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEE
Confidence 12223333332 256889999999999999999987654210 00 00124799
Q ss_pred EecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccc
Q 007931 314 PLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGR 393 (584)
Q Consensus 314 ~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GR 393 (584)
+|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+. ...||+..+. .|++..+|.||+||
T Consensus 308 ~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GR 378 (737)
T PRK02362 308 FHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGR 378 (737)
T ss_pred eecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999964 4467765543 38999999999999
Q ss_pred cCCC---CCcEEEEccChH-----HHhhhCCCCCCCcc--c--ccchhHHHHHHHhcCCC----CccCC---CCCCCC--
Q 007931 394 AGRV---RPGKCYRLYTEE-----YFVKEIPAEGIPEM--Q--RSNLVSCVIQLKALGID----NILGF---DWPASP-- 452 (584)
Q Consensus 394 aGR~---~~G~~~~l~~~~-----~~~~~~~~~~~pei--~--r~~l~~~~L~l~~~~~~----~~~~~---~~~~~p-- 452 (584)
|||. ..|.|+.++... .|+..+...+.|-- + ...|.+.++...+.|.- ++..| .|+..+
T Consensus 379 AGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~ 458 (737)
T PRK02362 379 AGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTD 458 (737)
T ss_pred CCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhcc
Confidence 9998 349999998653 23332222221111 1 12466777777776631 11111 333222
Q ss_pred ----CHHHHHHHHHHHHHcCCccCCCC---CCHHHHHHhccCCCChhhhHHHHhhcccC---ChHHHHHHHH
Q 007931 453 ----PPEAMIRALEVLYSLGVLDDDAK---LTSPTGFQVAEIPLEPMISKMILSSNELG---CSEEIITISA 514 (584)
Q Consensus 453 ----~~~~~~~al~~L~~~g~i~~~~~---lT~~lG~~~~~~pl~p~~~~~l~~~~~~~---c~~~~l~i~a 514 (584)
-.+.++.+++.|.+.|+|+.++. .| ++|++++.++++|..+..+..+.... ....++.+++
T Consensus 459 ~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t-~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~ 529 (737)
T PRK02362 459 DTGRLERVVDDVLDFLERNGMIEEDGETLEAT-ELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVC 529 (737)
T ss_pred chHHHHHHHHHHHHHHHHCCCeeecCCeEeEC-hHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhh
Confidence 23458899999999999987654 79 69999999999999999998876532 2344554544
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.4e-42 Score=383.36 Aligned_cols=458 Identities=16% Similarity=0.124 Sum_probs=295.5
Q ss_pred ccCCCCCCccchhhHHHHhcCCCchHHHHHHHH-HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHH
Q 007931 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILY-LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (584)
Q Consensus 28 ~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~-~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~l 106 (584)
+|.++++++.....+.+....- .++.|.+.+. .+.+++++++++|||||||......++......++++||++|+++|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~-l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aL 80 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEE-LYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKAL 80 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCC-CCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 4778888888777666644333 4566666665 4888999999999999999666555554433456789999999999
Q ss_pred HHHHHHHHHH-HHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccC-CCCCCCcEEEEeCCCcCcc--chhH
Q 007931 107 AVQAVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSI--STDI 182 (584)
Q Consensus 107 a~~~~~~~~~-~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~-~~l~~~~~iIiDE~Her~~--~~d~ 182 (584)
+.+.....-. ...|..++..+|...... .... .++|+|+||+++...+... .+++++++||+||+|.-+- ....
T Consensus 81 a~q~~~~~~~~~~~g~~v~~~~Gd~~~~~-~~~~-~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~ 158 (720)
T PRK00254 81 AEEKYREFKDWEKLGLRVAMTTGDYDSTD-EWLG-KYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGAT 158 (720)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCCCCch-hhhc-cCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHH
Confidence 9875543211 234666766666322211 1122 5799999999998877654 3589999999999994321 1122
Q ss_pred HHHHHHHHHHhcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHH
Q 007931 183 LLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQ 261 (584)
Q Consensus 183 l~~~l~~~~~~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 261 (584)
+..++. +...+.|+|++|||+ |++.+++|++........++++... .+...+ ..++.......+..
T Consensus 159 le~il~---~l~~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~-----~~~~~~-----~~~~~~~~~~~~~~ 225 (720)
T PRK00254 159 LEMILT---HMLGRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRK-----GVFYQG-----FLFWEDGKIERFPN 225 (720)
T ss_pred HHHHHH---hcCcCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCccee-----eEecCC-----eeeccCcchhcchH
Confidence 222222 334678999999999 8999999998654333222221110 000011 01111111111111
Q ss_pred HHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccC------------------------CCCCeEEEEecC
Q 007931 262 AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK------------------------NSSGLIILPLYS 317 (584)
Q Consensus 262 ~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~------------------------~~~~~~v~~lh~ 317 (584)
.....+..... .++++||||++++.++.++..|.+.+..... ......|++|||
T Consensus 226 ~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHa 303 (720)
T PRK00254 226 SWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHA 303 (720)
T ss_pred HHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCC
Confidence 22222223222 4678999999999999988877654321100 001246999999
Q ss_pred CCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC
Q 007931 318 GLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV 397 (584)
Q Consensus 318 ~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 397 (584)
+|++++|..+++.|++|.++|||||+++++|||+|++++||... ..|+ ..++ .+.+..+|.||+|||||.
T Consensus 304 gl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~~~-----~~~~~~~~~Qm~GRAGR~ 373 (720)
T PRK00254 304 GLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS-NFGW-----EDIPVLEIQQMMGRAGRP 373 (720)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-CCCc-----eeCCHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999999999999533 3343 2222 256788999999999996
Q ss_pred ---CCcEEEEccChHH----HhhhCCCCCCCccc------ccchhHHHHHHHhcCC-CCcc------CCCC--CCCCC--
Q 007931 398 ---RPGKCYRLYTEEY----FVKEIPAEGIPEMQ------RSNLVSCVIQLKALGI-DNIL------GFDW--PASPP-- 453 (584)
Q Consensus 398 ---~~G~~~~l~~~~~----~~~~~~~~~~pei~------r~~l~~~~L~l~~~~~-~~~~------~~~~--~~~p~-- 453 (584)
..|.++.+.+.+. ++..+.. .||-. ...|.+.++.....+. .+.. ...| ...|+
T Consensus 374 ~~d~~G~~ii~~~~~~~~~~~~~~~~~--~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~ 451 (720)
T PRK00254 374 KYDEVGEAIIVATTEEPSKLMERYIFG--KPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLY 451 (720)
T ss_pred CcCCCceEEEEecCcchHHHHHHHHhC--CchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChH
Confidence 5699998886432 3332111 11111 1234455565555542 2211 1112 22233
Q ss_pred --HHHHHHHHHHHHHcCCccCC--C--CCCHHHHHHhccCCCChhhhHHHHhhccc----CChHHHHHHHHhh
Q 007931 454 --PEAMIRALEVLYSLGVLDDD--A--KLTSPTGFQVAEIPLEPMISKMILSSNEL----GCSEEIITISAVL 516 (584)
Q Consensus 454 --~~~~~~al~~L~~~g~i~~~--~--~lT~~lG~~~~~~pl~p~~~~~l~~~~~~----~c~~~~l~i~a~l 516 (584)
.+.++.++..|.+.|+|+.+ + ..| ++|++++.++++|..++.+..+..- .....++.+++..
T Consensus 452 ~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t-~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~ 523 (720)
T PRK00254 452 SLEEKAKEIVYFLLENEFIDIDLEDRFIPL-PLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIAST 523 (720)
T ss_pred hHHHHHHHHHHHHHHCCCeEEcCCCCEeeC-hHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCC
Confidence 34577889999999999643 3 458 7999999999999999999877642 3445555555443
No 17
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-43 Score=342.00 Aligned_cols=342 Identities=19% Similarity=0.202 Sum_probs=265.6
Q ss_pred CCccccccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHH--HHhcCccCCC
Q 007931 20 GGVVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAGWADGG 95 (584)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~--l~~~~~~~~~ 95 (584)
.-+.....+|.+|++++....++.+.....|...+++.|..++ +++++|..|+|||||| |.+|.+ +++.. ...
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~p--~~~ 130 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQEP--KLF 130 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcCC--CCc
Confidence 3346677889999999999999999999999988888766655 5666999999999999 777854 33321 234
Q ss_pred eEEEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEeec-cCcCCCCCceEEEechHHHHHHHccCC-C-CCCCcEEEE
Q 007931 96 RVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDP-L-LTKYSVIMV 170 (584)
Q Consensus 96 ~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~~-~~~~~~~~~~I~~~T~~~ll~~l~~~~-~-l~~~~~iIi 170 (584)
.+++++|+|+||.| .+.+.+....|..+...+|..... .......+++|+|+|||.|.+++.+.. + +.+++++|+
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 57999999999987 455556666777777888844322 112222379999999999999998543 3 899999999
Q ss_pred eCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccc---
Q 007931 171 DEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF--- 245 (584)
Q Consensus 171 DE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 245 (584)
|||+ |.++.||...+-+.+...+...|.+++|||+ .+.++..---..+ ..+.++....
T Consensus 211 DEAD-rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p----------------~~v~~s~ky~tv~ 273 (476)
T KOG0330|consen 211 DEAD-RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNP----------------VKVAVSSKYQTVD 273 (476)
T ss_pred chHH-hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCC----------------eEEeccchhcchH
Confidence 9999 9999999888888887788899999999999 4455543211111 1233333221
Q ss_pred cceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHh
Q 007931 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (584)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (584)
.++.+|+..+..+.. ..++++.....++.++|||++...++.++-.|+.. ++...++||.|++..|.
T Consensus 274 ~lkQ~ylfv~~k~K~----~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l---------g~~a~~LhGqmsq~~Rl 340 (476)
T KOG0330|consen 274 HLKQTYLFVPGKDKD----TYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL---------GFQAIPLHGQMSQSKRL 340 (476)
T ss_pred HhhhheEeccccccc----hhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc---------CcceecccchhhHHHHH
Confidence 233444443333221 22334444456688999999999999999999876 99999999999999999
Q ss_pred cccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEE
Q 007931 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (584)
Q Consensus 326 ~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (584)
..++.|++|.+.||+|||++++|+|||.|++|||+++ |.+..+|+||+||+||. ++|+++.
T Consensus 341 g~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi------------------P~~skDYIHRvGRtaRaGrsG~~It 402 (476)
T KOG0330|consen 341 GALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDI------------------PTHSKDYIHRVGRTARAGRSGKAIT 402 (476)
T ss_pred HHHHHHhccCCcEEEecchhcccCCCCCceEEEecCC------------------CCcHHHHHHHcccccccCCCcceEE
Confidence 9999999999999999999999999999999999998 89999999999999999 8999999
Q ss_pred ccChHHHh
Q 007931 405 LYTEEYFV 412 (584)
Q Consensus 405 l~~~~~~~ 412 (584)
|++..+.+
T Consensus 403 lVtqyDve 410 (476)
T KOG0330|consen 403 LVTQYDVE 410 (476)
T ss_pred EEehhhhH
Confidence 99984443
No 18
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-42 Score=356.19 Aligned_cols=343 Identities=19% Similarity=0.245 Sum_probs=260.8
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcC------ccCCCe
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG------WADGGR 96 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~------~~~~~~ 96 (584)
.+..|+.++++......+..+...-|...+...+ ..+..+++++..|.|||||| |++|.+..-.. ...+..
T Consensus 89 ~~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~w-p~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~ 167 (519)
T KOG0331|consen 89 SSAAFQELGLSEELMKALKEQGFEKPTPIQAQGW-PIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPI 167 (519)
T ss_pred cchhhhcccccHHHHHHHHhcCCCCCchhhhccc-ceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCe
Confidence 3347999999999999998988888887776654 44556788999999999999 99997765443 112345
Q ss_pred EEEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEe-eccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeC
Q 007931 97 VIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTI-RFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDE 172 (584)
Q Consensus 97 ~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~-~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE 172 (584)
+++++|+|+||.| +.+..+....+.......|... ..+........+|+++|||+|++++..... |++++++|+||
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence 7999999999987 3344444444444455556322 212222223689999999999999987776 99999999999
Q ss_pred CCcCccchhHHHHHHHHHHHh-cCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc-----c
Q 007931 173 AHERSISTDILLGLLKKIQRC-RSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-----G 244 (584)
Q Consensus 173 ~Her~~~~d~l~~~l~~~~~~-~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 244 (584)
|+ |.++.+|-..+-+.+.+. +++.|+++.|||. .+..+++-|...+.+ +.+-+. .
T Consensus 248 AD-rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~----------------i~ig~~~~~~a~ 310 (519)
T KOG0331|consen 248 AD-RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQ----------------INVGNKKELKAN 310 (519)
T ss_pred HH-hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceE----------------EEecchhhhhhh
Confidence 99 999999988888888887 5666899999999 556676644444422 222111 1
Q ss_pred ccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHH
Q 007931 245 FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQ 324 (584)
Q Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 324 (584)
+.+...-.......... .+..++.......++++||||.+++.++++...|... .+.+..+||+.++.+|
T Consensus 311 ~~i~qive~~~~~~K~~-~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~---------~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 311 HNIRQIVEVCDETAKLR-KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK---------GWPAVAIHGDKSQSER 380 (519)
T ss_pred cchhhhhhhcCHHHHHH-HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc---------CcceeeecccccHHHH
Confidence 22222111112112222 2333333333667889999999999999999999775 6889999999999999
Q ss_pred hcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEE
Q 007931 325 EQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (584)
Q Consensus 325 ~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~ 403 (584)
..+++.|++|+..||||||+|++|+|||+|++||++++ |-+.++|+||+||+||. +.|.+|
T Consensus 381 ~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydf------------------P~~vEdYVHRiGRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 381 DWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDF------------------PNNVEDYVHRIGRTGRAGKKGTAI 442 (519)
T ss_pred HHHHHhcccCCcceEEEcccccccCCCccccEEEeCCC------------------CCCHHHHHhhcCccccCCCCceEE
Confidence 99999999999999999999999999999999999988 89999999999999997 889999
Q ss_pred EccChHHHhh
Q 007931 404 RLYTEEYFVK 413 (584)
Q Consensus 404 ~l~~~~~~~~ 413 (584)
.+++...+..
T Consensus 443 tfft~~~~~~ 452 (519)
T KOG0331|consen 443 TFFTSDNAKL 452 (519)
T ss_pred EEEeHHHHHH
Confidence 9999887654
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.3e-42 Score=366.79 Aligned_cols=338 Identities=18% Similarity=0.184 Sum_probs=247.1
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhcCccCCCeEEEEeCc
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~--~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
..+|.++++++.....+.+....-|. ..|.+++..+.++++++++||||||||. .+|.+-.-.......++++++|+
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t-~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Pt 81 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMT-PIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPT 81 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCC-HHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCC
Confidence 35799999999988888776666555 4566677788888999999999999994 44433221111123467999999
Q ss_pred hHHHHHHH--HHHHHHHh-CCcceeEEeeEee-ccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCcc
Q 007931 104 RRLAVQAV--ASRVAEEM-GVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (584)
Q Consensus 104 r~la~~~~--~~~~~~~~-~~~vg~~vg~~~~-~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (584)
|+|+.|.. .+.++... +..+...+|.... .+.......++|+|+||+.+.+.+..... +.++++||+|||| +..
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l 160 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RML 160 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHh
Confidence 99997632 23333332 4556555553211 11111123689999999999999876654 8999999999999 555
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEecccC--hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC--ccccceEEecCC
Q 007931 179 STDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFNVQIHYVEE 254 (584)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~~vi~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~ 254 (584)
+.++...+...+....++.|++++|||++ ...+...+...+. .+.+.. ....++.+|...
T Consensus 161 ~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~----------------~i~~~~~~~~~~i~~~~~~~ 224 (460)
T PRK11776 161 DMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPV----------------EVKVESTHDLPAIEQRFYEV 224 (460)
T ss_pred CcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCE----------------EEEECcCCCCCCeeEEEEEe
Confidence 66666555555555677889999999994 3455555544331 222221 112233444333
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC
Q 007931 255 PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (584)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g 334 (584)
...+ ....+..+.....++++||||+++++++.+++.|.+. ++.+..+||+|++.+|+++++.|++|
T Consensus 225 ~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g 291 (460)
T PRK11776 225 SPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ---------GFSALALHGDLEQRDRDQVLVRFANR 291 (460)
T ss_pred CcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3333 2333444444556678999999999999999999775 78899999999999999999999999
Q ss_pred CcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHh
Q 007931 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (584)
Q Consensus 335 ~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (584)
..+|||||+++++|||+|++++||++|+ |.+..+|+||+||+||. ..|.||.++++++..
T Consensus 292 ~~~vLVaTdv~~rGiDi~~v~~VI~~d~------------------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 292 SCSVLVATDVAARGLDIKALEAVINYEL------------------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred CCcEEEEecccccccchhcCCeEEEecC------------------CCCHhHhhhhcccccCCCCcceEEEEEchhHHH
Confidence 9999999999999999999999999988 88999999999999999 789999999987543
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.1e-41 Score=365.94 Aligned_cols=341 Identities=20% Similarity=0.226 Sum_probs=243.4
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcC-----ccCCCeE
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-----WADGGRV 97 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~-----~~~~~~~ 97 (584)
+..+|.++++.+.....|.+....-|...|+. .+..+.+++++|++|||||||| +++|.+..... ...+..+
T Consensus 128 p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~-aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~ 206 (545)
T PTZ00110 128 PVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQ-GWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIV 206 (545)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHH-HHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 34579999999998888887777777655554 5666777888999999999999 66776543221 1123457
Q ss_pred EEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEeecc-CcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCC
Q 007931 98 IACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFE-DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEA 173 (584)
Q Consensus 98 I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~~~-~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~ 173 (584)
|+++|+|+|+.| +.++.+....+..+....|...... ........+|+|+||++|++.+..... +.++++||||||
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEA 286 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEA 286 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehH
Confidence 999999999976 3333344444444444444221111 111112579999999999999876654 899999999999
Q ss_pred CcCccchhHHHHHHHHHHHhcCCceEEEEecccC--hHHHHHHhhc-CCCCCCCcccccCCCCCCeEEEECCc----ccc
Q 007931 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHA-RKGRRGLEGVELVPRLEPAILSVEGR----GFN 246 (584)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 246 (584)
| +..+.++...+.+.+...+++.|++++|||++ .+.+.+.+.. .+. .+.+... ...
T Consensus 287 d-~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v----------------~i~vg~~~l~~~~~ 349 (545)
T PTZ00110 287 D-RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPV----------------HVNVGSLDLTACHN 349 (545)
T ss_pred H-hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCE----------------EEEECCCccccCCC
Confidence 9 67777777666666666778899999999994 3445554432 221 1111100 011
Q ss_pred ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhc
Q 007931 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (584)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (584)
++..+......+....+...+..+. ...+++||||++++.++.+++.|... ++.+..+||++++++|..
T Consensus 350 i~q~~~~~~~~~k~~~L~~ll~~~~--~~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~~~~ihg~~~~~eR~~ 418 (545)
T PTZ00110 350 IKQEVFVVEEHEKRGKLKMLLQRIM--RDGDKILIFVETKKGADFLTKELRLD---------GWPALCIHGDKKQEERTW 418 (545)
T ss_pred eeEEEEEEechhHHHHHHHHHHHhc--ccCCeEEEEecChHHHHHHHHHHHHc---------CCcEEEEECCCcHHHHHH
Confidence 1111111111111222222222221 15678999999999999999999754 678899999999999999
Q ss_pred ccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEc
Q 007931 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (584)
Q Consensus 327 i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (584)
+++.|++|+.+|||||+++++|||||+|++||++++ |.+..+|+||+||+||. ..|.||.+
T Consensus 419 il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~------------------P~s~~~yvqRiGRtGR~G~~G~ai~~ 480 (545)
T PTZ00110 419 VLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDF------------------PNQIEDYVHRIGRTGRAGAKGASYTF 480 (545)
T ss_pred HHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999999999999999999888 88999999999999999 88999999
Q ss_pred cChHHHh
Q 007931 406 YTEEYFV 412 (584)
Q Consensus 406 ~~~~~~~ 412 (584)
+++++..
T Consensus 481 ~~~~~~~ 487 (545)
T PTZ00110 481 LTPDKYR 487 (545)
T ss_pred ECcchHH
Confidence 9987543
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.2e-41 Score=357.71 Aligned_cols=335 Identities=18% Similarity=0.191 Sum_probs=240.8
Q ss_pred ccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhc--Ccc----CCCeEEE
Q 007931 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEA--GWA----DGGRVIA 99 (584)
Q Consensus 28 ~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~--~~~----~~~~~I~ 99 (584)
+|.++++++.....+.+....-|.. .|.+++..+.+++++++++||||||| +++|.+..-. ... ...++|+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~-iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTP-IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCH-HHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 6999999999999998877777765 55556677778889999999999999 5666443211 110 1235899
Q ss_pred EeCchHHHHHHH--HHHHHHHhCCcceeEEeeEe-eccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCc
Q 007931 100 CTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTI-RFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (584)
Q Consensus 100 v~~~r~la~~~~--~~~~~~~~~~~vg~~vg~~~-~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~He 175 (584)
++|+++|+.|.. .+.+.+..+..+...+|... ..+........+|+|+||++|+..+..... ++++++|||||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah- 159 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD- 159 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-
Confidence 999999998633 33344445555545554221 111111122689999999999998876654 8999999999999
Q ss_pred CccchhHHHHHHHHHHHhcCCceEEEEecccCh--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccceEE
Q 007931 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIH 250 (584)
Q Consensus 176 r~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~ 250 (584)
+..+..+...+...+.......+++++|||++. ..+...+...+. .+.+..+. ..+..+
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~----------------~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPL----------------EIEVARRNTASEQVTQH 223 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCe----------------EEEEecccccccceeEE
Confidence 555555555555545556677899999999943 455554433331 22221111 112222
Q ss_pred ecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCC
Q 007931 251 YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (584)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 330 (584)
+...... .....+..+.......++||||+++.+++.+++.|.+. ++.+..+||++++++|.++++.
T Consensus 224 ~~~~~~~----~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~ 290 (456)
T PRK10590 224 VHFVDKK----RKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRSAAIHGNKSQGARTRALAD 290 (456)
T ss_pred EEEcCHH----HHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHH
Confidence 2111111 11233334444455678999999999999999999765 7889999999999999999999
Q ss_pred CCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 331 ~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
|++|+++|||||+++++|||+|+|++||++++ |.+..+|+||+|||||. ..|.++.+++.+
T Consensus 291 F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~------------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~ 352 (456)
T PRK10590 291 FKSGDIRVLVATDIAARGLDIEELPHVVNYEL------------------PNVPEDYVHRIGRTGRAAATGEALSLVCVD 352 (456)
T ss_pred HHcCCCcEEEEccHHhcCCCcccCCEEEEeCC------------------CCCHHHhhhhccccccCCCCeeEEEEecHH
Confidence 99999999999999999999999999999888 88999999999999999 789999999876
Q ss_pred HH
Q 007931 410 YF 411 (584)
Q Consensus 410 ~~ 411 (584)
+.
T Consensus 353 d~ 354 (456)
T PRK10590 353 EH 354 (456)
T ss_pred HH
Confidence 54
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.2e-40 Score=354.23 Aligned_cols=337 Identities=16% Similarity=0.225 Sum_probs=246.7
Q ss_pred ccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHH--HHhcCc--cCCCeEEEEe
Q 007931 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAGW--ADGGRVIACT 101 (584)
Q Consensus 28 ~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~--l~~~~~--~~~~~~I~v~ 101 (584)
+|.++++++.....+.+....-|. ..|.+.+..+.++++++++|||||||| +++|.+ +..... ....++++++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~-~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPT-AIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCC-HHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 689999999988888776666665 455666666777888999999999999 455543 222111 1235689999
Q ss_pred CchHHHHH--HHHHHHHHHhCCcceeEEeeEeecc--CcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcC
Q 007931 102 QPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFE--DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (584)
Q Consensus 102 ~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~~~--~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her 176 (584)
|+++|+.| ..+..+++..+..++..+|.....+ ..... ..+|+|+||++|++.+..... +.++++||+|||| +
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~ 158 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE-NQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-R 158 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC-CCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-H
Confidence 99999987 3455666777778877776322111 11122 678999999999999877665 8999999999999 5
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEecccChH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceEE
Q 007931 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIH 250 (584)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~ 250 (584)
..+..+...+.......+...|++++|||++.. .+..++...+. .+..... ...+...
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~i~~~ 222 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPV----------------EVEAEPSRRERKKIHQW 222 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCE----------------EEEecCCcccccCceEE
Confidence 555555444444444456677999999999543 44444443331 1211111 0112222
Q ss_pred ecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCC
Q 007931 251 YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (584)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 330 (584)
+.... ........+..+......+++||||+++++++.+++.|.+. ++.+..+||+|++.+|..+++.
T Consensus 223 ~~~~~---~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~g~~~~~~R~~~l~~ 290 (434)
T PRK11192 223 YYRAD---DLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCCYLEGEMVQAKRNEAIKR 290 (434)
T ss_pred EEEeC---CHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHH
Confidence 22111 11223444455555556788999999999999999999764 7889999999999999999999
Q ss_pred CCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 331 ~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
|++|.++|||||+++++|||+|++++||++++ |.|...|+||+||+||. ..|.++.+++..
T Consensus 291 f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~ 352 (434)
T PRK11192 291 LTDGRVNVLVATDVAARGIDIDDVSHVINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAH 352 (434)
T ss_pred HhCCCCcEEEEccccccCccCCCCCEEEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHH
Confidence 99999999999999999999999999999887 88999999999999998 789999999877
Q ss_pred HHhh
Q 007931 410 YFVK 413 (584)
Q Consensus 410 ~~~~ 413 (584)
++..
T Consensus 353 d~~~ 356 (434)
T PRK11192 353 DHLL 356 (434)
T ss_pred HHHH
Confidence 6643
No 23
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-40 Score=356.59 Aligned_cols=336 Identities=20% Similarity=0.270 Sum_probs=265.3
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcC-ccCCCe-EEEEe
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-WADGGR-VIACT 101 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~-~~~~~~-~I~v~ 101 (584)
+.+|.+++++....+++.+....-|...|+..|...+.. +++++.|+|||||| |.+|.+-.-.. ...... +++++
T Consensus 28 ~~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g-~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~ 106 (513)
T COG0513 28 PPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAG-RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILA 106 (513)
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEEC
Confidence 367999999999999999988889988888877666654 77999999999999 78886644221 111222 89999
Q ss_pred CchHHHHH--HHHHHHHHHh-CCcceeEEeeEe-eccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcC
Q 007931 102 QPRRLAVQ--AVASRVAEEM-GVKVGEEVGYTI-RFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (584)
Q Consensus 102 ~~r~la~~--~~~~~~~~~~-~~~vg~~vg~~~-~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her 176 (584)
|+|+||.| ..+..+++.. +..+...+|... ..+........+|+|+|||+|++++....+ +.++.++|+|||+ |
T Consensus 107 PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-r 185 (513)
T COG0513 107 PTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-R 185 (513)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-h
Confidence 99999998 6677777777 677777777322 111111121599999999999999988755 9999999999999 8
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEecccCh--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEEC--C---ccccceE
Q 007931 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVE--G---RGFNVQI 249 (584)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~v~~ 249 (584)
.++.+|...+-+.+...+.+.|++++|||++. ..++.-+...+. .+.+. . ....++.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~----------------~i~v~~~~~~~~~~~i~q 249 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPV----------------EIEVSVEKLERTLKKIKQ 249 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCc----------------EEEEccccccccccCceE
Confidence 88889988888888888889999999999955 333333333331 23332 1 1233445
Q ss_pred EecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccC
Q 007931 250 HYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFS 329 (584)
Q Consensus 250 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~ 329 (584)
+|......+ .....+..+......+++||||+++..++.++..|... ++.+..+||+|++++|.++++
T Consensus 250 ~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~lhG~l~q~~R~~~l~ 317 (513)
T COG0513 250 FYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR---------GFKVAALHGDLPQEERDRALE 317 (513)
T ss_pred EEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------CCeEEEecCCCCHHHHHHHHH
Confidence 554443322 34555666666666678999999999999999999876 799999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccCh
Q 007931 330 PTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (584)
Q Consensus 330 ~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (584)
.|++|..+|||||+++++|||||+|.+||++++ |.+..+|+||+||+||. ..|.++.++++
T Consensus 318 ~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~------------------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~ 379 (513)
T COG0513 318 KFKDGELRVLVATDVAARGLDIPDVSHVINYDL------------------PLDPEDYVHRIGRTGRAGRKGVAISFVTE 379 (513)
T ss_pred HHHcCCCCEEEEechhhccCCccccceeEEccC------------------CCCHHHheeccCccccCCCCCeEEEEeCc
Confidence 999999999999999999999999999999888 88999999999999999 88999999986
Q ss_pred H
Q 007931 409 E 409 (584)
Q Consensus 409 ~ 409 (584)
.
T Consensus 380 ~ 380 (513)
T COG0513 380 E 380 (513)
T ss_pred H
Confidence 4
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.7e-41 Score=353.64 Aligned_cols=335 Identities=18% Similarity=0.205 Sum_probs=239.4
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHH--HhcCc-----cCCCeE
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYL--KEAGW-----ADGGRV 97 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l--~~~~~-----~~~~~~ 97 (584)
.+|.++++++.....+.+....-|...|+ +.+..+.++++++++|||||||| +++|.+. ..... ..+.++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~-~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQA-LALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHH-HHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 56999999999999998877777765555 45566778889999999999999 5555442 21111 123568
Q ss_pred EEEeCchHHHHHH--HHHHHHHHhCCcceeEEeeEe-eccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCC
Q 007931 98 IACTQPRRLAVQA--VASRVAEEMGVKVGEEVGYTI-RFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEA 173 (584)
Q Consensus 98 I~v~~~r~la~~~--~~~~~~~~~~~~vg~~vg~~~-~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~ 173 (584)
++++|+|+|+.|. ....+.+..+..++..+|... ..+........+|+|+||++|++.+..... +.++++||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 9999999999884 455666677777766666321 111111122579999999999999876554 899999999999
Q ss_pred CcCccchhHHHHHHHHHHHhc--CCceEEEEecccChH--HHH-HHhhcCCCCCCCcccccCCCCCCeEEEECCcc---c
Q 007931 174 HERSISTDILLGLLKKIQRCR--SDLRLIISSATIEAK--SMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRG---F 245 (584)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~--~~~~vi~~SAT~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 245 (584)
| +..+.++...+...+.... ...+.+++|||++.. .+. .++.... .+.+.... .
T Consensus 167 d-~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~-----------------~i~v~~~~~~~~ 228 (423)
T PRK04837 167 D-RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPE-----------------YVEVEPEQKTGH 228 (423)
T ss_pred H-HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCE-----------------EEEEcCCCcCCC
Confidence 9 4455444444333332222 245578999999543 232 2232211 22221111 1
Q ss_pred cceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHh
Q 007931 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (584)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (584)
.+...+...... .....+..+......+++||||+++..++.+++.|.+. ++.+..+||++++++|.
T Consensus 229 ~i~~~~~~~~~~----~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~ 295 (423)
T PRK04837 229 RIKEELFYPSNE----EKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD---------GHRVGLLTGDVAQKKRL 295 (423)
T ss_pred ceeEEEEeCCHH----HHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---------CCcEEEecCCCChhHHH
Confidence 111111111111 12233444444455678999999999999999999765 78899999999999999
Q ss_pred cccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEE
Q 007931 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (584)
Q Consensus 326 ~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (584)
++++.|++|+++|||||+++++|||+|+|++||++++ |.+..+|+||+||+||. +.|.++.
T Consensus 296 ~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~------------------P~s~~~yiqR~GR~gR~G~~G~ai~ 357 (423)
T PRK04837 296 RILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL------------------PDDCEDYVHRIGRTGRAGASGHSIS 357 (423)
T ss_pred HHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC------------------CCchhheEeccccccCCCCCeeEEE
Confidence 9999999999999999999999999999999999888 88999999999999999 8899999
Q ss_pred ccChHHH
Q 007931 405 LYTEEYF 411 (584)
Q Consensus 405 l~~~~~~ 411 (584)
++++++.
T Consensus 358 ~~~~~~~ 364 (423)
T PRK04837 358 LACEEYA 364 (423)
T ss_pred EeCHHHH
Confidence 9998754
No 25
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.1e-40 Score=349.60 Aligned_cols=340 Identities=16% Similarity=0.203 Sum_probs=239.9
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHH--HHHHHHhcCccCCCeEEEEeCc
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~--ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
..+|.++++++..+..+.+....-|.. .|.+.+..+.++++++++||||||||.. +|.+..-.....+.++++++|+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~-~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSA-IQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCH-HHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 477999999999999998766665554 5555667777888899999999999954 4433221111234578999999
Q ss_pred hHHHHHH--HHHHHHHHhCCcceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccc
Q 007931 104 RRLAVQA--VASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (584)
Q Consensus 104 r~la~~~--~~~~~~~~~~~~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (584)
++|+.|. ....+....+..++..+|.....+.. ......+|+++||+.+.+.+..... ++++++|||||+|. ...
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~~ 184 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-MLS 184 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HHh
Confidence 9998762 23334444445555555533211111 1122479999999999988876654 89999999999993 333
Q ss_pred hhHHHHHHHHHHHhcCCceEEEEecccChH--HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceEEecCC
Q 007931 180 TDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHYVEE 254 (584)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~ 254 (584)
.++...+...+....++.|++++|||++.+ .+...+...+. .+.+... ...+..++...
T Consensus 185 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 248 (401)
T PTZ00424 185 RGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPK----------------RILVKKDELTLEGIRQFYVAV 248 (401)
T ss_pred cchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCE----------------EEEeCCCCcccCCceEEEEec
Confidence 333333444445567789999999999543 33333322221 1111111 11122233322
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC
Q 007931 255 PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (584)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g 334 (584)
...++ ....+..+.......++||||+++++++.+++.|.+. ++.+..+||++++++|..+++.|++|
T Consensus 249 ~~~~~---~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~g 316 (401)
T PTZ00424 249 EKEEW---KFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGDMDQKDRDLIMREFRSG 316 (401)
T ss_pred ChHHH---HHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 22222 2233334444445678999999999999999998764 67899999999999999999999999
Q ss_pred CcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHhh
Q 007931 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 335 ~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (584)
+++|||||+++++|||+|++++||++|. |.|..+|+||+|||||. ..|.|+.++++++...
T Consensus 317 ~~~vLvaT~~l~~GiDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 317 STRVLITTDLLARGIDVQQVSLVINYDL------------------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred CCCEEEEcccccCCcCcccCCEEEEECC------------------CCCHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 9999999999999999999999999887 88999999999999998 7899999999876553
No 26
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.7e-39 Score=355.17 Aligned_cols=421 Identities=21% Similarity=0.251 Sum_probs=290.6
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHH-HHHhCCcceeEEeeEe
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV-AEEMGVKVGEEVGYTI 131 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~-~~~~~~~vg~~vg~~~ 131 (584)
.+|..+...+.+++|++|++|||||||.++...++......++++||++|.|+|+.+...+.- .+.+|.+++..+|...
T Consensus 35 ~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~ 114 (766)
T COG1204 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYD 114 (766)
T ss_pred HHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcc
Confidence 455666666667899999999999999777777766654446789999999999998666543 4688999998888432
Q ss_pred eccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCC----c-CccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 132 RFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH----E-RSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 132 ~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~H----e-r~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
..... .. .++|+|+||+++...+++.+. +.++++|||||+| + |+. .++.++.+........|+|++|||
T Consensus 115 ~~~~~-l~-~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~---~lE~iv~r~~~~~~~~rivgLSAT 189 (766)
T COG1204 115 LDDER-LA-RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGP---VLESIVARMRRLNELIRIVGLSAT 189 (766)
T ss_pred cchhh-hc-cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCc---eehhHHHHHHhhCcceEEEEEeee
Confidence 22111 12 689999999999988877665 8999999999999 2 454 566777777777778999999999
Q ss_pred c-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCc----chHHHHHHHHHHHHHhcCCCCCEE
Q 007931 206 I-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV----SDYVQAAVSTVLLIHDKEPPGDIL 280 (584)
Q Consensus 206 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~iL 280 (584)
+ |.+++++|++..+....+.+.+...... +........... ..........+...+ ..++++|
T Consensus 190 lpN~~evA~wL~a~~~~~~~rp~~l~~~v~----------~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvL 257 (766)
T COG1204 190 LPNAEEVADWLNAKLVESDWRPVPLRRGVP----------YVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVL 257 (766)
T ss_pred cCCHHHHHHHhCCcccccCCCCcccccCCc----------cceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEE
Confidence 9 9999999999988766666655433221 111111111111 111122233333332 4578999
Q ss_pred EEeCcHHHHHHHHHHHHHHhhhc----------------cC------------CCCCeEEEEecCCCCHHHHhcccCCCC
Q 007931 281 VFLTGQDDIDATIQLLTEEARTS----------------KK------------NSSGLIILPLYSGLSRAEQEQVFSPTP 332 (584)
Q Consensus 281 VF~~~~~~i~~l~~~L~~~~~~~----------------~~------------~~~~~~v~~lh~~l~~~~r~~i~~~~~ 332 (584)
|||+++..+...++.|....... .. ..-...+++||+||+.++|..+.+.|+
T Consensus 258 vFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr 337 (766)
T COG1204 258 VFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFR 337 (766)
T ss_pred EEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHh
Confidence 99999999999999998532210 00 011235899999999999999999999
Q ss_pred CCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEcc-C-
Q 007931 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLY-T- 407 (584)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~-~- 407 (584)
.|+++||+||+++++|||+|.-++||. ...+||+..|+ .++++.+++||+|||||. .-|..+.+. +
T Consensus 338 ~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~g~-----~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~ 408 (766)
T COG1204 338 KGKIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKGGI-----VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSH 408 (766)
T ss_pred cCCceEEEechHHhhhcCCcceEEEEe----eeEEEcCCCCe-----EECchhhHhhccCcCCCCCcCCCCcEEEEecCc
Confidence 999999999999999999998888883 35678874442 389999999999999998 445555555 2
Q ss_pred -hHHHhhhCCCCCCCcccccc------hhHHHHHHHhcCCCCccCC----CC----CC-------CCCHHHHHHHHHHHH
Q 007931 408 -EEYFVKEIPAEGIPEMQRSN------LVSCVIQLKALGIDNILGF----DW----PA-------SPPPEAMIRALEVLY 465 (584)
Q Consensus 408 -~~~~~~~~~~~~~pei~r~~------l~~~~L~l~~~~~~~~~~~----~~----~~-------~p~~~~~~~al~~L~ 465 (584)
+..+.........||...+. +...++.+.+.+ +...+ .| .. --....+.+++..|.
T Consensus 409 ~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~--~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~ 486 (766)
T COG1204 409 DELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVG--DAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLE 486 (766)
T ss_pred cchhHHHHHhhccCcchHHHhhcccccchheEEEEEecc--chhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHH
Confidence 22222213333444442211 222222222211 11110 00 01 113456788999999
Q ss_pred HcC-CccCC---CCCCHHHHHHhccCCCChhhhHHHHhhcc
Q 007931 466 SLG-VLDDD---AKLTSPTGFQVAEIPLEPMISKMILSSNE 502 (584)
Q Consensus 466 ~~g-~i~~~---~~lT~~lG~~~~~~pl~p~~~~~l~~~~~ 502 (584)
+.+ .++.. -.-| .+|+.+++++++|..++.+.....
T Consensus 487 ~~~~~~~~~~~~~~at-e~g~~~s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 487 ENGLILDADWEALHAT-ELGKLVSRLYIDPESAKIFRDLLA 526 (766)
T ss_pred hccceeeccccccchh-HHHHHhhhccCCHHHHHHHHHHHH
Confidence 986 55532 3568 599999999999999999887754
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.5e-40 Score=355.52 Aligned_cols=341 Identities=18% Similarity=0.161 Sum_probs=238.8
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcC-------ccCCC
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-------WADGG 95 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~-------~~~~~ 95 (584)
+-.+|.++++++.....|.+....-|...|+ +.+..+.+++++++++||||||| +++|.+..-.. ...+.
T Consensus 119 pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~-~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLETAGYEFPTPIQM-QAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHHcCCCCCCHHHH-HHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 4457999999999888887766666665554 45666778889999999999999 77776543211 11345
Q ss_pred eEEEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEe
Q 007931 96 RVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVD 171 (584)
Q Consensus 96 ~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiD 171 (584)
.+|+++|+|+|+.| ..++.+.+..+..+...+|.....+. .......+|+|+|||+|++.+..... +.++++||||
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViD 277 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLD 277 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEee
Confidence 68999999999976 23333444444444444442221111 11122579999999999998876554 9999999999
Q ss_pred CCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---cc
Q 007931 172 EAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FN 246 (584)
Q Consensus 172 E~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 246 (584)
||| +..+.++...+.+ +....++.|++++|||+ +.+.+..++...+. .+.+.... ..
T Consensus 278 Ead-~ml~~gf~~~i~~-i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~----------------~i~~~~~~~~~~~ 339 (518)
T PLN00206 278 EVD-CMLERGFRDQVMQ-IFQALSQPQVLLFSATVSPEVEKFASSLAKDII----------------LISIGNPNRPNKA 339 (518)
T ss_pred cHH-HHhhcchHHHHHH-HHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCE----------------EEEeCCCCCCCcc
Confidence 999 4444444444333 33334678999999999 44566666654431 22221111 11
Q ss_pred ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhc
Q 007931 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (584)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (584)
+...+......+........+... ....+++||||+++..++.+++.|... .++.+..+||++++++|..
T Consensus 340 v~q~~~~~~~~~k~~~l~~~l~~~--~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~ 409 (518)
T PLN00206 340 VKQLAIWVETKQKKQKLFDILKSK--QHFKPPAVVFVSSRLGADLLANAITVV--------TGLKALSIHGEKSMKERRE 409 (518)
T ss_pred eeEEEEeccchhHHHHHHHHHHhh--cccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHH
Confidence 122211111111112222222111 122467999999999999999988653 2678999999999999999
Q ss_pred ccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEc
Q 007931 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (584)
Q Consensus 327 i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (584)
+++.|++|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+|||||. ..|.++.+
T Consensus 410 il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~------------------P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 410 VMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDM------------------PNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred HHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCC------------------CCCHHHHHHhccccccCCCCeEEEEE
Confidence 999999999999999999999999999999999888 88999999999999999 78999999
Q ss_pred cChHHHh
Q 007931 406 YTEEYFV 412 (584)
Q Consensus 406 ~~~~~~~ 412 (584)
+++++..
T Consensus 472 ~~~~~~~ 478 (518)
T PLN00206 472 VNEEDRN 478 (518)
T ss_pred EchhHHH
Confidence 9987654
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.2e-40 Score=355.20 Aligned_cols=335 Identities=16% Similarity=0.215 Sum_probs=237.1
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH--hc-C----ccCCCeE
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EA-G----WADGGRV 97 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~--~~-~----~~~~~~~ 97 (584)
.+|.++++++.....|.+....-|.. .|.+.+..+.++++++++|||||||| +++|.+-. .. . .....++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptp-iQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTP-IQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCH-HHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36999999999999998887777765 45555667778888999999999999 55554321 11 0 1113578
Q ss_pred EEEeCchHHHHHHH--HHHHHHHhCCcceeEEeeEeecc-CcCCCCCceEEEechHHHHHHHccCC--CCCCCcEEEEeC
Q 007931 98 IACTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRFE-DFTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDE 172 (584)
Q Consensus 98 I~v~~~r~la~~~~--~~~~~~~~~~~vg~~vg~~~~~~-~~~~~~~~~I~~~T~~~ll~~l~~~~--~l~~~~~iIiDE 172 (584)
||++|+++|+.|.. ...+....+..++..+|...... ........+|+|+||++|++.+.... .+.++++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999998743 33444555666666666321111 11112257899999999999887653 378899999999
Q ss_pred CCcCccchhHHHHHHHHHHHhc--CCceEEEEecccChH--HHH-HHhhcCCCCCCCcccccCCCCCCeEEEECCcc---
Q 007931 173 AHERSISTDILLGLLKKIQRCR--SDLRLIISSATIEAK--SMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRG--- 244 (584)
Q Consensus 173 ~Her~~~~d~l~~~l~~~~~~~--~~~~vi~~SAT~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 244 (584)
||. ..+..+...+...+.... .+.|++++|||++.. .+. .++.... .+.+....
T Consensus 168 Ah~-lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~-----------------~i~v~~~~~~~ 229 (572)
T PRK04537 168 ADR-MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPE-----------------KLVVETETITA 229 (572)
T ss_pred HHH-HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCc-----------------EEEeccccccc
Confidence 993 344444443333332222 367999999999543 222 2332211 11111111
Q ss_pred ccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHH
Q 007931 245 FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQ 324 (584)
Q Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 324 (584)
..+...+..... ......+..+.......++||||+++..++.+++.|.+. ++.+..+||+|++.+|
T Consensus 230 ~~i~q~~~~~~~----~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~---------g~~v~~lhg~l~~~eR 296 (572)
T PRK04537 230 ARVRQRIYFPAD----EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH---------GYRVGVLSGDVPQKKR 296 (572)
T ss_pred cceeEEEEecCH----HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHH
Confidence 111222221111 122333444445556778999999999999999999765 7889999999999999
Q ss_pred hcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEE
Q 007931 325 EQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (584)
Q Consensus 325 ~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~ 403 (584)
.++++.|++|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+||+||. ..|.|+
T Consensus 297 ~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~------------------P~s~~~yvqRiGRaGR~G~~G~ai 358 (572)
T PRK04537 297 ESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL------------------PFDAEDYVHRIGRTARLGEEGDAI 358 (572)
T ss_pred HHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCC------------------CCCHHHHhhhhcccccCCCCceEE
Confidence 99999999999999999999999999999999999888 88999999999999999 889999
Q ss_pred EccChHHH
Q 007931 404 RLYTEEYF 411 (584)
Q Consensus 404 ~l~~~~~~ 411 (584)
.++++.+.
T Consensus 359 ~~~~~~~~ 366 (572)
T PRK04537 359 SFACERYA 366 (572)
T ss_pred EEecHHHH
Confidence 99987643
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-39 Score=349.61 Aligned_cols=336 Identities=18% Similarity=0.240 Sum_probs=238.5
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH--hcC-----ccCCCe
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAG-----WADGGR 96 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~--~~~-----~~~~~~ 96 (584)
+.+|.+++++......|.+....- .+.+|.+.+..+.+++++|+++||||||| +++|.+-. ... .....+
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~-~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPY-CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCC-CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 456888999998888887754444 46788888899999999999999999999 66664422 111 011356
Q ss_pred EEEEeCchHHHHHHH--HHHHHHHhCCcceeEEeeEee---ccCcCCCCCceEEEechHHHHHHHccCC-CCCCCcEEEE
Q 007931 97 VIACTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMV 170 (584)
Q Consensus 97 ~I~v~~~r~la~~~~--~~~~~~~~~~~vg~~vg~~~~---~~~~~~~~~~~I~~~T~~~ll~~l~~~~-~l~~~~~iIi 170 (584)
++|++|+++|+.|.. .+.+.+..+..+...+|.... .+... ....+|+|+||++|+..+.... .++++++|||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~-~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE-ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHh-CCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 899999999998743 344555566666666663211 11111 2258999999999998776544 4899999999
Q ss_pred eCCCcCccchhHHHHHHHHHHHh--cCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc--
Q 007931 171 DEAHERSISTDILLGLLKKIQRC--RSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-- 244 (584)
Q Consensus 171 DE~Her~~~~d~l~~~l~~~~~~--~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 244 (584)
||+|. ..+..+...+.+.+... ..+.+++++|||+ +...+.+.+...+. .+.+....
T Consensus 244 DEah~-l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~ 306 (475)
T PRK01297 244 DEADR-MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA----------------IVEIEPENVA 306 (475)
T ss_pred chHHH-HHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE----------------EEEeccCcCC
Confidence 99993 33333433332222222 2357899999998 34445444433321 22221111
Q ss_pred -ccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHH
Q 007931 245 -FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAE 323 (584)
Q Consensus 245 -~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 323 (584)
..++.++......+ ....+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++
T Consensus 307 ~~~~~~~~~~~~~~~----k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~ 373 (475)
T PRK01297 307 SDTVEQHVYAVAGSD----KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GINAAQLSGDVPQHK 373 (475)
T ss_pred CCcccEEEEEecchh----HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHH
Confidence 11122221111111 1223334444455678999999999999999998654 678999999999999
Q ss_pred HhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEE
Q 007931 324 QEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKC 402 (584)
Q Consensus 324 r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~ 402 (584)
|.++++.|++|+++|||||+++++|||||++++||++|+ |.|.++|+||+|||||. ..|.+
T Consensus 374 R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~ 435 (475)
T PRK01297 374 RIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVS 435 (475)
T ss_pred HHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceE
Confidence 999999999999999999999999999999999999988 89999999999999999 78999
Q ss_pred EEccChHHH
Q 007931 403 YRLYTEEYF 411 (584)
Q Consensus 403 ~~l~~~~~~ 411 (584)
+.++++++.
T Consensus 436 i~~~~~~d~ 444 (475)
T PRK01297 436 ISFAGEDDA 444 (475)
T ss_pred EEEecHHHH
Confidence 999987643
No 30
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.3e-39 Score=353.15 Aligned_cols=335 Identities=19% Similarity=0.232 Sum_probs=240.7
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhcCccCCCeEEEEeCch
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~--~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
.+|.++++++.....|.+....-|. ..|.+++..+.+++++|++||||||||. .+|.+-.-.......++|+++|++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~pt-piQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPS-PIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCC-HHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 3599999999999888776555554 5566677777788999999999999994 445432211112345689999999
Q ss_pred HHHHHHHHHH---HHHHh-CCcceeEEeeEee-ccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCcc
Q 007931 105 RLAVQAVASR---VAEEM-GVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (584)
Q Consensus 105 ~la~~~~~~~---~~~~~-~~~vg~~vg~~~~-~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (584)
+|+.| +++. +.+.+ +..+...+|.... .+.......++|+|+||+.+++++..... +.++++||+||||+ .+
T Consensus 85 eLa~Q-v~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml 162 (629)
T PRK11634 85 ELAVQ-VAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-ML 162 (629)
T ss_pred HHHHH-HHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-Hh
Confidence 99875 3333 33333 4555555553211 11111122689999999999999887665 89999999999995 45
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEecccC--hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccceEEecC
Q 007931 179 STDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYVE 253 (584)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~~vi~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~ 253 (584)
+..+...+...+.......+++++|||++ ...+...|...+. .+.+.... ..+...|..
T Consensus 163 ~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~----------------~i~i~~~~~~~~~i~q~~~~ 226 (629)
T PRK11634 163 RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQ----------------EVRIQSSVTTRPDISQSYWT 226 (629)
T ss_pred hcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCe----------------EEEccCccccCCceEEEEEE
Confidence 55566665555556677889999999994 3344443333221 22222111 112222222
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCC
Q 007931 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (584)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~ 333 (584)
....+ ....+..+.......++||||+++.+++.+++.|.+. ++.+..+||+|++++|.++++.|++
T Consensus 227 v~~~~----k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~ 293 (629)
T PRK11634 227 VWGMR----KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNSAALNGDMNQALREQTLERLKD 293 (629)
T ss_pred echhh----HHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhC
Confidence 22112 2223334444455678999999999999999999765 7889999999999999999999999
Q ss_pred CCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHH
Q 007931 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (584)
Q Consensus 334 g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (584)
|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+||+||. +.|.++.++++.+.
T Consensus 294 G~~~ILVATdv~arGIDip~V~~VI~~d~------------------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 294 GRLDILIATDVAARGLDVERISLVVNYDI------------------PMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred CCCCEEEEcchHhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 99999999999999999999999999887 88999999999999999 77999999987653
No 31
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.9e-39 Score=322.50 Aligned_cols=444 Identities=19% Similarity=0.185 Sum_probs=313.3
Q ss_pred cCCCCCCccchhhHHHHhc---CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchH
Q 007931 29 LSSASSIGYGYASIEKQRQ---RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (584)
Q Consensus 29 ~~~l~~~~~~~~~l~~~~~---~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~ 105 (584)
.+.|++... ++.+.+.+- -+|+.. -.+-..+.++++.+|+.+|+||||.+....=.......+++.++++|..+
T Consensus 196 vdeLdipe~-fk~~lk~~G~~eLlPVQ~--laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVA 272 (830)
T COG1202 196 VDELDIPEK-FKRMLKREGIEELLPVQV--LAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVA 272 (830)
T ss_pred ccccCCcHH-HHHHHHhcCcceecchhh--hhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHH
Confidence 567777765 466666662 255533 34556678899999999999999955444333333445788999999999
Q ss_pred HHHHHHHHHHH--HHhCCcceeEEeeE-eeccC----cCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCC----
Q 007931 106 LAVQAVASRVA--EEMGVKVGEEVGYT-IRFED----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAH---- 174 (584)
Q Consensus 106 la~~~~~~~~~--~~~~~~vg~~vg~~-~~~~~----~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~H---- 174 (584)
||.|...+... ..+|..+...||.+ ++... ..+..+.+|+|+|++-+-..++....+.+++.|||||+|
T Consensus 273 LANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~d 352 (830)
T COG1202 273 LANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLED 352 (830)
T ss_pred hhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccc
Confidence 99996654333 44566666667732 22111 122237999999999988888888889999999999999
Q ss_pred -cCccchhHHHHHHHHHHHhcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEec
Q 007931 175 -ERSISTDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYV 252 (584)
Q Consensus 175 -er~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 252 (584)
||+... .+++.++....++.|+|.+|||+ |++.+++.++... +..+.|+.|++.|..
T Consensus 353 eERG~RL---dGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~l------------------V~y~~RPVplErHlv 411 (830)
T COG1202 353 EERGPRL---DGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAKL------------------VLYDERPVPLERHLV 411 (830)
T ss_pred hhcccch---hhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCee------------------EeecCCCCChhHeee
Confidence 666654 45666666678899999999999 9999999998764 566788888876655
Q ss_pred CCCcc-hHH---HHHHHH-HHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcc
Q 007931 253 EEPVS-DYV---QAAVST-VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (584)
Q Consensus 253 ~~~~~-~~~---~~~~~~-i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i 327 (584)
..... +.. ...+.. .....+..-.|++|||++|+..++.+++.|... ++.+.++|+||+..+|+.+
T Consensus 412 f~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaGL~y~eRk~v 482 (830)
T COG1202 412 FARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK---------GLKAAPYHAGLPYKERKSV 482 (830)
T ss_pred eecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC---------CcccccccCCCcHHHHHHH
Confidence 44322 111 111111 112223345699999999999999999999765 8999999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEE
Q 007931 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYR 404 (584)
Q Consensus 328 ~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~ 404 (584)
...|.++.+.++|+|..++.|||+|+-.+|..+=.+ -..|.|..+|.||.|||||. ..|++|.
T Consensus 483 E~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM--------------G~~WLs~~EF~QM~GRAGRp~yHdrGkVyl 548 (830)
T COG1202 483 ERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAM--------------GIEWLSVREFQQMLGRAGRPDYHDRGKVYL 548 (830)
T ss_pred HHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHc--------------ccccCCHHHHHHHhcccCCCCcccCceEEE
Confidence 999999999999999999999999988887765332 23399999999999999998 6799999
Q ss_pred ccChH-HHhhhCCCC------------CCCcccc---cchhHHHHHHHhcCCC-------CccCCCCCCCCCHHHHHHHH
Q 007931 405 LYTEE-YFVKEIPAE------------GIPEMQR---SNLVSCVIQLKALGID-------NILGFDWPASPPPEAMIRAL 461 (584)
Q Consensus 405 l~~~~-~~~~~~~~~------------~~pei~r---~~l~~~~L~l~~~~~~-------~~~~~~~~~~p~~~~~~~al 461 (584)
+..+. .|...|.+. +.|-+.. ..-.+-+|. ..++. ++.+..+- ..-..+.++
T Consensus 549 lvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~g---~~~~~~k~l 623 (830)
T COG1202 549 LVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVNSLMLG---AAFDPKKAL 623 (830)
T ss_pred EecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcChhhcc---ccCCHHHHH
Confidence 98744 222222221 1122221 122222333 22221 11111110 112356899
Q ss_pred HHHHHcCCccCCC---CCCHHHHHHhccCCCChhhhHHHHhhcccCChHHHHHHHHhhccCcccccCc
Q 007931 462 EVLYSLGVLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGR 526 (584)
Q Consensus 462 ~~L~~~g~i~~~~---~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~l~~~~~f~~~~ 526 (584)
..|.++|+|+.+| ++| +.|++++...+.|..|..+..++ ....++.-+++.+..+++.++.+.
T Consensus 624 ~~Lee~g~i~~~G~~v~~T-~yGrava~~Fl~p~~a~~Ir~~v-~~~~~pl~i~~~l~pfE~ayls~~ 689 (830)
T COG1202 624 SKLEEYGMIKKKGNIVRPT-PYGRAVAMSFLGPSEAEFIREGV-LASMDPLRIAAELEPFENAYLSGF 689 (830)
T ss_pred HHHHhcCCeeccCCEeeec-cccceeEEeecCchHHHHHHHhh-hccCChHhHhhccccccccccChH
Confidence 9999999999776 579 79999999999999999998886 445555544444444556655544
No 32
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-39 Score=298.98 Aligned_cols=348 Identities=16% Similarity=0.196 Sum_probs=270.3
Q ss_pred CCccccccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHh--cCccCCCeE
Q 007931 20 GGVVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE--AGWADGGRV 97 (584)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~--~~~~~~~~~ 97 (584)
+.+....++|++.+++....+.+..+...-|...+|.+|...+ +++++|.++..|+|||.....-++. ....+..++
T Consensus 20 s~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~ 98 (400)
T KOG0328|consen 20 SEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQA 98 (400)
T ss_pred ccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeecccccceeeE
Confidence 3445566789999999999999999999999999988876655 5667999999999999222211111 111233568
Q ss_pred EEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCC
Q 007931 98 IACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEA 173 (584)
Q Consensus 98 I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~ 173 (584)
++++|+|+|+.| ++...++..++..+-...|...-.++ +......+++.+|||++++.+....+ -+.+.++|+||+
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA 178 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH
Confidence 999999999987 66777788888888777764433232 22223789999999999999987776 789999999999
Q ss_pred CcCccchhHHHHHHHHHHHhcCCceEEEEecccChH--HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccc-cceEE
Q 007931 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF-NVQIH 250 (584)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 250 (584)
+| .++-.+-..........+++.|++++|||++-+ +..+.|...|++. .+.-++.+. .++.+
T Consensus 179 De-mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvri--------------lvkrdeltlEgIKqf 243 (400)
T KOG0328|consen 179 DE-MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRI--------------LVKRDELTLEGIKQF 243 (400)
T ss_pred HH-HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeE--------------EEecCCCchhhhhhh
Confidence 96 444466666677677788999999999999544 4556777766331 111122221 24455
Q ss_pred ecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCC
Q 007931 251 YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (584)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 330 (584)
|.....++ ...+++.++.....-.+.+|||+|++.+..+.+.+++. ++.|-.+||+|+++||.+++..
T Consensus 244 ~v~ve~Ee---wKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~---------nftVssmHGDm~qkERd~im~d 311 (400)
T KOG0328|consen 244 FVAVEKEE---WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMND 311 (400)
T ss_pred eeeechhh---hhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh---------CceeeeccCCcchhHHHHHHHH
Confidence 55544333 24455566665556677999999999999999999876 8999999999999999999999
Q ss_pred CCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 331 ~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
|+.|+-+||++|++.++|+|+|.|..||++++ |..+..|+||+||.||. +.|.++.++..+
T Consensus 312 FRsg~SrvLitTDVwaRGiDv~qVslviNYDL------------------P~nre~YIHRIGRSGRFGRkGvainFVk~~ 373 (400)
T KOG0328|consen 312 FRSGKSRVLITTDVWARGIDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKSD 373 (400)
T ss_pred hhcCCceEEEEechhhccCCcceeEEEEecCC------------------CccHHHHhhhhccccccCCcceEEEEecHH
Confidence 99999999999999999999999999999999 88999999999999999 899999999988
Q ss_pred HHhh
Q 007931 410 YFVK 413 (584)
Q Consensus 410 ~~~~ 413 (584)
+...
T Consensus 374 d~~~ 377 (400)
T KOG0328|consen 374 DLRI 377 (400)
T ss_pred HHHH
Confidence 7654
No 33
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-39 Score=324.86 Aligned_cols=336 Identities=20% Similarity=0.268 Sum_probs=276.1
Q ss_pred ccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHH--HHhcCccC--CCeEEEEe
Q 007931 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAGWAD--GGRVIACT 101 (584)
Q Consensus 28 ~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~--l~~~~~~~--~~~~I~v~ 101 (584)
-|.+||+|......|.+...-.|...+++.|..++.+ +.++-.|.|||||| +++|.+ ++...|.+ +-.+++++
T Consensus 70 kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G-~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIIS 148 (758)
T KOG0343|consen 70 KFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQG-HDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIIS 148 (758)
T ss_pred hHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccC-cccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEec
Confidence 4999999999999999988888888888887777755 55999999999999 888855 44455543 44679999
Q ss_pred CchHHHHH--HHHHHHHHHhCCcceeEEeeE-eeccCcCCCCCceEEEechHHHHHHHccCCC--CCCCcEEEEeCCCcC
Q 007931 102 QPRRLAVQ--AVASRVAEEMGVKVGEEVGYT-IRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHER 176 (584)
Q Consensus 102 ~~r~la~~--~~~~~~~~~~~~~vg~~vg~~-~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iIiDE~Her 176 (584)
|+|+||.| .+..++++..+...|..+|.. +.++..... ..+|+|||||+|++++..++. -.++.++|+|||+ |
T Consensus 149 PTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R 226 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-R 226 (758)
T ss_pred chHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-H
Confidence 99999999 778889999999999999843 444444444 789999999999999998886 5788999999999 9
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEEC-----CccccceE
Q 007931 177 SISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-----GRGFNVQI 249 (584)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~ 249 (584)
.++++|-..+-..+...++..|.+++|||. ++.++++.--..|. .+.+. +.+-....
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~----------------~vsvhe~a~~atP~~L~Q 290 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPV----------------YVSVHENAVAATPSNLQQ 290 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCc----------------EEEEeccccccChhhhhh
Confidence 999999887777777788899999999998 66777776444442 33332 22233445
Q ss_pred EecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccC
Q 007931 250 HYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFS 329 (584)
Q Consensus 250 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~ 329 (584)
+|...+..+ .+..++.........++|||++|..++..+++.+.+. .|++.+..+||+|++..|.+++.
T Consensus 291 ~y~~v~l~~----Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-------rpg~~l~~L~G~~~Q~~R~ev~~ 359 (758)
T KOG0343|consen 291 SYVIVPLED----KIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-------RPGIPLLALHGTMSQKKRIEVYK 359 (758)
T ss_pred eEEEEehhh----HHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-------CCCCceeeeccchhHHHHHHHHH
Confidence 555555444 4555666666777888999999999999999998775 36899999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccCh
Q 007931 330 PTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (584)
Q Consensus 330 ~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (584)
.|-...--|++||+++++|+|+|.|++||..+. |...++|+||+||+.|. ..|.++.+.++
T Consensus 360 ~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DC------------------Pedv~tYIHRvGRtAR~~~~G~sll~L~p 421 (758)
T KOG0343|consen 360 KFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDC------------------PEDVDTYIHRVGRTARYKERGESLLMLTP 421 (758)
T ss_pred HHHHhcceEEEeehhhhccCCCcccceEEEecC------------------chhHHHHHHHhhhhhcccCCCceEEEEcc
Confidence 998888899999999999999999999999887 99999999999999999 88999999887
Q ss_pred HHH
Q 007931 409 EYF 411 (584)
Q Consensus 409 ~~~ 411 (584)
.+.
T Consensus 422 sEe 424 (758)
T KOG0343|consen 422 SEE 424 (758)
T ss_pred hhH
Confidence 663
No 34
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-40 Score=325.63 Aligned_cols=338 Identities=21% Similarity=0.272 Sum_probs=260.5
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHH---HhcCccCCCeEEEEe
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYL---KEAGWADGGRVIACT 101 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l---~~~~~~~~~~~I~v~ 101 (584)
.||.++++|++....+......-|...++.-|.-++.. ++++-+|.|||||| |.+|.+- +.-......++++++
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallg-kDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLG-KDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhc-chhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 47999999999999999988889998888887777765 55899999999999 7777542 222112235689999
Q ss_pred CchHHHHH--HHHHHHHHHhCCcceeEEe-eEeeccCcCCCCCceEEEechHHHHHHHccCCC--CCCCcEEEEeCCCcC
Q 007931 102 QPRRLAVQ--AVASRVAEEMGVKVGEEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHER 176 (584)
Q Consensus 102 ~~r~la~~--~~~~~~~~~~~~~vg~~vg-~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iIiDE~Her 176 (584)
|+|+|+.| ++.+.++.+.++.+|..+| ..++.+.......++|+++|||+|.+++.+.+. +.++.++|+|||+ |
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-R 338 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-R 338 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-H
Confidence 99999998 8999999999999999888 444444433334799999999999999998875 8999999999999 8
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcccc--ceEEec
Q 007931 177 SISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFN--VQIHYV 252 (584)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~ 252 (584)
.+...|...+-..+....++.|.+++|||+ .+..+...--+.|++ ++.-+....+ ....|.
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvr---------------ifvd~~~~~a~~LtQEFi 403 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVR---------------IFVDPNKDTAPKLTQEFI 403 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeE---------------EEeCCccccchhhhHHHh
Confidence 998888777766666677888999999999 455666654444422 2211221111 111111
Q ss_pred C-CCcchHH-HHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCC
Q 007931 253 E-EPVSDYV-QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (584)
Q Consensus 253 ~-~~~~~~~-~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 330 (584)
. .+..+.. +..+ ..+....-...++||+.+++.++++.-.|-- .++.+.-+||+|++++|.+.++.
T Consensus 404 RIR~~re~dRea~l---~~l~~rtf~~~~ivFv~tKk~AHRl~IllGL---------lgl~agElHGsLtQ~QRlesL~k 471 (691)
T KOG0338|consen 404 RIRPKREGDREAML---ASLITRTFQDRTIVFVRTKKQAHRLRILLGL---------LGLKAGELHGSLTQEQRLESLEK 471 (691)
T ss_pred eeccccccccHHHH---HHHHHHhcccceEEEEehHHHHHHHHHHHHH---------hhchhhhhcccccHHHHHHHHHH
Confidence 1 1111111 1111 1222222345699999999999998766633 38899999999999999999999
Q ss_pred CCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 331 ~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
|+++.++|||||++|++|+||++|.+||++.+ |.+...|+||+||+.|. +.|..+.|+.+.
T Consensus 472 Fk~~eidvLiaTDvAsRGLDI~gV~tVINy~m------------------P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~ 533 (691)
T KOG0338|consen 472 FKKEEIDVLIATDVASRGLDIEGVQTVINYAM------------------PKTIEHYLHRVGRTARAGRAGRSVTLVGES 533 (691)
T ss_pred HHhccCCEEEEechhhccCCccceeEEEeccC------------------chhHHHHHHHhhhhhhcccCcceEEEeccc
Confidence 99999999999999999999999999999888 99999999999999999 889999999877
Q ss_pred HH
Q 007931 410 YF 411 (584)
Q Consensus 410 ~~ 411 (584)
+-
T Consensus 534 dR 535 (691)
T KOG0338|consen 534 DR 535 (691)
T ss_pred cH
Confidence 43
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=7.5e-38 Score=347.76 Aligned_cols=335 Identities=16% Similarity=0.170 Sum_probs=226.9
Q ss_pred CCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHHHH
Q 007931 34 SIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAV 111 (584)
Q Consensus 34 ~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~ 111 (584)
+++.....+.+ +.--..+.+|.+.+..+.+++++++++||||||| +++|.+-.-. ..++.++++++|+|+|+.|+.
T Consensus 21 l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~-~~~~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 21 AHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA-DDPRATALYLAPTKALAADQL 98 (742)
T ss_pred CCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh-hCCCcEEEEEcChHHHHHHHH
Confidence 44544444533 3333567888888999999999999999999999 6777553221 124567899999999998865
Q ss_pred HHH--HHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccC-----CCCCCCcEEEEeCCCcC-ccchhHH
Q 007931 112 ASR--VAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-----PLLTKYSVIMVDEAHER-SISTDIL 183 (584)
Q Consensus 112 ~~~--~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~-----~~l~~~~~iIiDE~Her-~~~~d~l 183 (584)
... +. ..+..++...|.....+.......++|+++||++|...+... ..++++++|||||+|.. +.....+
T Consensus 99 ~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~ 177 (742)
T TIGR03817 99 RAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHV 177 (742)
T ss_pred HHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHH
Confidence 542 22 224455555554332222222236899999999998655432 13789999999999942 2222233
Q ss_pred HHHHHHHHH----hcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcccc-ceEEe-cCC--
Q 007931 184 LGLLKKIQR----CRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFN-VQIHY-VEE-- 254 (584)
Q Consensus 184 ~~~l~~~~~----~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~-~~~-- 254 (584)
..+++++.+ ...+.|+|++|||+ +...+.+++.+.+.. ++..++.... ....+ .+.
T Consensus 178 ~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~---------------~i~~~~~~~~~~~~~~~~p~~~ 242 (742)
T TIGR03817 178 ALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVV---------------AVTEDGSPRGARTVALWEPPLT 242 (742)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeE---------------EECCCCCCcCceEEEEecCCcc
Confidence 334444332 34678999999999 666666665544311 1111111110 11111 110
Q ss_pred --------C-cchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHh
Q 007931 255 --------P-VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (584)
Q Consensus 255 --------~-~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (584)
+ ...........+..+.. .+.++||||+|++.++.++..|.+.+.... ...+..+..+||++++++|.
T Consensus 243 ~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~-~~l~~~v~~~hgg~~~~eR~ 319 (742)
T TIGR03817 243 ELTGENGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVD-PDLAERVAAYRAGYLPEDRR 319 (742)
T ss_pred ccccccccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-cccccchhheecCCCHHHHH
Confidence 0 00111122333333333 357899999999999999999987653321 11246788999999999999
Q ss_pred cccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEE
Q 007931 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (584)
Q Consensus 326 ~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (584)
++++.|++|++++|||||++|+|||||++++||++|+ |.+.++|+||+|||||. +.|.++.
T Consensus 320 ~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~ 381 (742)
T TIGR03817 320 ELERALRDGELLGVATTNALELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVL 381 (742)
T ss_pred HHHHHHHcCCceEEEECchHhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEE
Confidence 9999999999999999999999999999999999998 89999999999999999 7799998
Q ss_pred ccC
Q 007931 405 LYT 407 (584)
Q Consensus 405 l~~ 407 (584)
+.+
T Consensus 382 v~~ 384 (742)
T TIGR03817 382 VAR 384 (742)
T ss_pred EeC
Confidence 886
No 36
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4e-38 Score=313.71 Aligned_cols=335 Identities=20% Similarity=0.269 Sum_probs=263.5
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCc---------cC
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW---------AD 93 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~---------~~ 93 (584)
+-.+|.+.++.+..+.-+.+-+...|...++..|. ...+++++|.+++|||||| +++|.++..... ..
T Consensus 243 plrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aip-l~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~ 321 (673)
T KOG0333|consen 243 PLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIP-LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIE 321 (673)
T ss_pred cccChhhcCCCHHHHHHHHhcCCCCCchHHHhhcc-chhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhccc
Confidence 44679999999999999999999999988887766 5556777999999999999 788876553322 13
Q ss_pred CCeEEEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEeeccC--cCCCCCceEEEechHHHHHHHccCCC-CCCCcEE
Q 007931 94 GGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVI 168 (584)
Q Consensus 94 ~~~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~~~~--~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~i 168 (584)
+...|++.|+|.|+.| .-...+++.+|+.+...+|....-+. ..+. .+.|+++|||.|+..+-+.-+ +++..+|
T Consensus 322 gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~-gceiviatPgrLid~Lenr~lvl~qctyv 400 (673)
T KOG0333|consen 322 GPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM-GCEIVIATPGRLIDSLENRYLVLNQCTYV 400 (673)
T ss_pred CceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc-cceeeecCchHHHHHHHHHHHHhccCceE
Confidence 4567999999999987 44556778888888888886555444 2334 899999999999998876655 8999999
Q ss_pred EEeCCCcCccchhHHHHHHHHHHHhc-----------------------CC--ceEEEEeccc--ChHHHHH-HhhcCCC
Q 007931 169 MVDEAHERSISTDILLGLLKKIQRCR-----------------------SD--LRLIISSATI--EAKSMSA-FFHARKG 220 (584)
Q Consensus 169 IiDE~Her~~~~d~l~~~l~~~~~~~-----------------------~~--~~vi~~SAT~--~~~~~~~-~~~~~~~ 220 (584)
|+|||+ |.++.+|-..+.+.+.... +. .+.+.+|||+ .++.+++ ||....
T Consensus 401 vldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv- 478 (673)
T KOG0333|consen 401 VLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV- 478 (673)
T ss_pred eccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe-
Confidence 999999 8888888887777765432 11 5789999999 4456654 555433
Q ss_pred CCCCcccccCCCCCCeEEEEC--Ccccc-ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHH
Q 007931 221 RRGLEGVELVPRLEPAILSVE--GRGFN-VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (584)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~--~~~~~-v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~ 297 (584)
++.+. |+..| ++.........+. ...+..+..+....+++||+++++.++.+++.|.
T Consensus 479 ----------------~vtig~~gk~~~rveQ~v~m~~ed~k----~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~Le 538 (673)
T KOG0333|consen 479 ----------------VVTIGSAGKPTPRVEQKVEMVSEDEK----RKKLIEILESNFDPPIIIFVNTKKGADALAKILE 538 (673)
T ss_pred ----------------EEEeccCCCCccchheEEEEecchHH----HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHh
Confidence 33332 33322 2222222222222 3344444455566789999999999999999998
Q ss_pred HHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccc
Q 007931 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENL 377 (584)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l 377 (584)
+. ++.+..|||+-++++|..+++.|++|...|+||||+|++|||||||.+||++++
T Consensus 539 K~---------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydm--------------- 594 (673)
T KOG0333|consen 539 KA---------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDM--------------- 594 (673)
T ss_pred hc---------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecch---------------
Confidence 86 899999999999999999999999999999999999999999999999999988
Q ss_pred eeeeccHHhHHHhccccCCC-CCcEEEEccChHH
Q 007931 378 VVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (584)
Q Consensus 378 ~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (584)
..|...|.||+||+||+ +.|.++.++++++
T Consensus 595 ---aksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 595 ---AKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred ---hhhHHHHHHHhccccccccCceeEEEeccch
Confidence 67899999999999999 8899999999876
No 37
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=307.97 Aligned_cols=338 Identities=19% Similarity=0.226 Sum_probs=252.5
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHH--HHhcCccC--CCeEEE
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAGWAD--GGRVIA 99 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~--l~~~~~~~--~~~~I~ 99 (584)
...|..+++|+....++.++... -....|+..+..+..++++++.|.|||||| +++|.+ +....+.. +..+|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~-~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFE-TMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCcc-chhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 34588899999999888664433 245566667777778889999999999999 888855 33333332 345799
Q ss_pred EeCchHHHHH--HHHHHHHHHh-CCcceeEEeeEeec-cCcCCCCCceEEEechHHHHHHHccCCC--CCCCcEEEEeCC
Q 007931 100 CTQPRRLAVQ--AVASRVAEEM-GVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEA 173 (584)
Q Consensus 100 v~~~r~la~~--~~~~~~~~~~-~~~vg~~vg~~~~~-~~~~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iIiDE~ 173 (584)
|+|+|+||.| .+++.+-+.. +..++..+|...+. +.......++|+|+|||+|++++.+.+. .++..++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999998 4455555555 67777777754332 2111122699999999999999988654 788899999999
Q ss_pred CcCccchhHHHHHHHHHHHhcCCceEEEEecccCh--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc-----cc
Q 007931 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-----FN 246 (584)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 246 (584)
+ |.++..|-..+.+.+.......|..++|||.+. ++++..--... +..+.+.... -.
T Consensus 240 D-rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d---------------~~~v~~~d~~~~~The~ 303 (543)
T KOG0342|consen 240 D-RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRD---------------PVFVNVDDGGERETHER 303 (543)
T ss_pred h-hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCC---------------ceEeecCCCCCcchhhc
Confidence 9 899999999999888888899999999999843 44443221110 1122221111 12
Q ss_pred ceEEecCCCcchHHHHHHHHHHHHHhc-CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHh
Q 007931 247 VQIHYVEEPVSDYVQAAVSTVLLIHDK-EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (584)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (584)
++.-|.-.+..... ..+....+. ....+|+|||+|...+..+++.|... ++.|..+||++++..|.
T Consensus 304 l~Qgyvv~~~~~~f----~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT 370 (543)
T KOG0342|consen 304 LEQGYVVAPSDSRF----SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI---------DLPVLEIHGKQKQNKRT 370 (543)
T ss_pred ccceEEeccccchH----HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc---------CCchhhhhcCCcccccc
Confidence 23334433333322 222222222 23378999999999999999999754 88999999999999999
Q ss_pred cccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEE
Q 007931 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (584)
Q Consensus 326 ~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (584)
.++..|++.+.-||||||++++|+|+|+|++||++|. |....+|+||+||+||. ..|+.+.
T Consensus 371 ~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~------------------P~d~~~YIHRvGRTaR~gk~G~alL 432 (543)
T KOG0342|consen 371 STFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDP------------------PSDPEQYIHRVGRTAREGKEGKALL 432 (543)
T ss_pred hHHHHHhhcccceEEecchhhccCCCCCceEEEEeCC------------------CCCHHHHHHHhccccccCCCceEEE
Confidence 9999999999999999999999999999999999887 88999999999999999 7899999
Q ss_pred ccChHHH
Q 007931 405 LYTEEYF 411 (584)
Q Consensus 405 l~~~~~~ 411 (584)
+..+++.
T Consensus 433 ~l~p~El 439 (543)
T KOG0342|consen 433 LLAPWEL 439 (543)
T ss_pred EeChhHH
Confidence 9887654
No 38
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-38 Score=297.77 Aligned_cols=358 Identities=19% Similarity=0.194 Sum_probs=279.8
Q ss_pred CCCCCCCCC--cccccCCCccccccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--H
Q 007931 5 WKPGAEKPR--LLDDEEGGVVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--T 80 (584)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~ 80 (584)
||..-.-|| .....+.+..+..+.|.++.+.+.....+.+....-|...+.+.|.-++ .+++++..|..|+||| +
T Consensus 61 wk~~l~lpp~d~R~~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~ 139 (459)
T KOG0326|consen 61 WKATLKLPPKDTRYKTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAY 139 (459)
T ss_pred hHHhccCCCCCccccccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccce
Confidence 555555554 4455666777788889999999999999999999888877776665555 6777999999999999 8
Q ss_pred HHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHc
Q 007931 81 QIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMM 157 (584)
Q Consensus 81 ~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~ 157 (584)
.+|.+-........-+.++++|+|++|.| ++..++++.++..+...+|...-.++. ...+..+++++|||++++...
T Consensus 140 ~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~ 219 (459)
T KOG0326|consen 140 CIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAK 219 (459)
T ss_pred echhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHh
Confidence 88876554433333456999999999988 889999999999888888855444433 233478999999999999987
Q ss_pred cCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCC
Q 007931 158 DDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLE 234 (584)
Q Consensus 158 ~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (584)
.... +++...+|+|||+ ..+..+|...+-+.+...+++.|+++.|||. .+..|.+-+...|.
T Consensus 220 KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy-------------- 284 (459)
T KOG0326|consen 220 KGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPY-------------- 284 (459)
T ss_pred cccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcc--------------
Confidence 7665 9999999999999 5778888887777777788999999999999 34445443333331
Q ss_pred CeEEEECC--ccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEE
Q 007931 235 PAILSVEG--RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLII 312 (584)
Q Consensus 235 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v 312 (584)
.+..-. ....|..+|........ +.-+..+.....-.+.+|||++.+.+|.+++.+.+. ++.+
T Consensus 285 --~INLM~eLtl~GvtQyYafV~e~qK----vhCLntLfskLqINQsIIFCNS~~rVELLAkKITel---------Gysc 349 (459)
T KOG0326|consen 285 --EINLMEELTLKGVTQYYAFVEERQK----VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL---------GYSC 349 (459)
T ss_pred --eeehhhhhhhcchhhheeeechhhh----hhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc---------cchh
Confidence 222211 12334455544333222 222223333344567899999999999999999887 8999
Q ss_pred EEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhcc
Q 007931 313 LPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAG 392 (584)
Q Consensus 313 ~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~G 392 (584)
.+.|+.|-++.|.++|..|++|..+.+|||+.+.+||||++|++||++++ |.+.++|.||+|
T Consensus 350 yyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDf------------------pk~aEtYLHRIG 411 (459)
T KOG0326|consen 350 YYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDF------------------PKNAETYLHRIG 411 (459)
T ss_pred hHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCC------------------CCCHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999 889999999999
Q ss_pred ccCCC-CCcEEEEccChHHH
Q 007931 393 RAGRV-RPGKCYRLYTEEYF 411 (584)
Q Consensus 393 RaGR~-~~G~~~~l~~~~~~ 411 (584)
|+||. ..|.++.|++-++-
T Consensus 412 RsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 412 RSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred CCccCCCcceEEEEEehhhh
Confidence 99999 88999999985543
No 39
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-37 Score=304.46 Aligned_cols=354 Identities=20% Similarity=0.232 Sum_probs=262.5
Q ss_pred ccCCCC--CCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH---hcCccCCC--eEE
Q 007931 28 SLSSAS--SIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK---EAGWADGG--RVI 98 (584)
Q Consensus 28 ~~~~l~--~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~---~~~~~~~~--~~I 98 (584)
+|++++ +++.....+.++.... ....|...+..+.++.+|++.++|||||| +++|.+-. .....+.+ ..+
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~-mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEK-MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcc-cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 455544 5577666665543332 34556677788888999999999999999 88886632 22222223 469
Q ss_pred EEeCchHHHHH--HHHHHHHHH-hCCcceeEEeeEeeccCcCC--CCCceEEEechHHHHHHHccCC-C--CCCCcEEEE
Q 007931 99 ACTQPRRLAVQ--AVASRVAEE-MGVKVGEEVGYTIRFEDFTN--KDLTAIKFLTDGVLLREMMDDP-L--LTKYSVIMV 170 (584)
Q Consensus 99 ~v~~~r~la~~--~~~~~~~~~-~~~~vg~~vg~~~~~~~~~~--~~~~~I~~~T~~~ll~~l~~~~-~--l~~~~~iIi 170 (584)
+++|+|+|+.| +++.-+... .+..+...+|...-.++... ...++|+|+|||+|++.+.... . ++.++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 99999999998 677665555 56777778885433222211 2378899999999999987633 2 559999999
Q ss_pred eCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC-----c
Q 007931 171 DEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-----R 243 (584)
Q Consensus 171 DE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 243 (584)
|||+ |.++++|...+-..+..++++.|.=++|||. .++++....-..++. +.+.. .
T Consensus 164 DEAD-rLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~----------------V~V~~k~~~~t 226 (567)
T KOG0345|consen 164 DEAD-RLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVR----------------VSVKEKSKSAT 226 (567)
T ss_pred cchH-hHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCcee----------------eeecccccccC
Confidence 9999 9999999999888888888999999999998 445555544333321 22211 1
Q ss_pred cccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHH
Q 007931 244 GFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAE 323 (584)
Q Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 323 (584)
+..+..+|....... ....++++..+...++++||++|...++-....+.... ....++.+||.|.+..
T Consensus 227 PS~L~~~Y~v~~a~e----K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-------~~~~i~~iHGK~~q~~ 295 (567)
T KOG0345|consen 227 PSSLALEYLVCEADE----KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL-------KKREIFSIHGKMSQKA 295 (567)
T ss_pred chhhcceeeEecHHH----HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh-------CCCcEEEecchhcchh
Confidence 222455665554433 34455566666777899999999999999999887763 3788999999999999
Q ss_pred HhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEE
Q 007931 324 QEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKC 402 (584)
Q Consensus 324 r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~ 402 (584)
|.++++.|++....+++|||++++|||||+|++||+++. |...+++.||+||+||. +.|.+
T Consensus 296 R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~Dp------------------P~~~~~FvHR~GRTaR~gr~G~A 357 (567)
T KOG0345|consen 296 RAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDP------------------PKDPSSFVHRCGRTARAGREGNA 357 (567)
T ss_pred HHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCC------------------CCChhHHHhhcchhhhccCccce
Confidence 999999999888899999999999999999999999666 77788899999999999 77877
Q ss_pred EEccC--hHHHhhhCCCCCCCcccccch
Q 007931 403 YRLYT--EEYFVKEIPAEGIPEMQRSNL 428 (584)
Q Consensus 403 ~~l~~--~~~~~~~~~~~~~pei~r~~l 428 (584)
+.+.. ++.|...|.-...|++.+...
T Consensus 358 ivfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 358 IVFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred EEEecccHHHHHHHHHhcCccchhhhcc
Confidence 66554 566766566666777766543
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-36 Score=324.51 Aligned_cols=307 Identities=16% Similarity=0.191 Sum_probs=213.5
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEee
Q 007931 52 YKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (584)
Q Consensus 52 ~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~ 129 (584)
...|.+++.++.+++++++++||||||| +++|.+.. ++.+|+++|+++|+.+++.. ....|..+....|.
T Consensus 13 r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~--l~~~gi~~~~l~~~ 84 (470)
T TIGR00614 13 RPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQ--LKASGIPATFLNSS 84 (470)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHH--HHHcCCcEEEEeCC
Confidence 4578888889889999999999999999 67786542 34679999999999876655 23456655444442
Q ss_pred Eeec------cCcCCCCCceEEEechHHHHHHH--ccCC-CCCCCcEEEEeCCCcCccc-hhHHHH--HHHHHHHhcCCc
Q 007931 130 TIRF------EDFTNKDLTAIKFLTDGVLLREM--MDDP-LLTKYSVIMVDEAHERSIS-TDILLG--LLKKIQRCRSDL 197 (584)
Q Consensus 130 ~~~~------~~~~~~~~~~I~~~T~~~ll~~l--~~~~-~l~~~~~iIiDE~Her~~~-~d~l~~--~l~~~~~~~~~~ 197 (584)
.... ...... ..+|+|+||+.+.... .... ...++++|||||||..+-+ .++... .+..+....++.
T Consensus 85 ~~~~~~~~i~~~~~~~-~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~ 163 (470)
T TIGR00614 85 QSKEQQKNVLTDLKDG-KIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNV 163 (470)
T ss_pred CCHHHHHHHHHHHhcC-CCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCC
Confidence 2111 011122 5789999999875321 1111 3678999999999954322 222222 233455566889
Q ss_pred eEEEEecccChHH---HHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcC
Q 007931 198 RLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKE 274 (584)
Q Consensus 198 ~vi~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~ 274 (584)
+++++|||++... +.++++... +.++...-...++....... ..+..+.....+. ...
T Consensus 164 ~~l~lTAT~~~~~~~di~~~l~l~~---------------~~~~~~s~~r~nl~~~v~~~-~~~~~~~l~~~l~---~~~ 224 (470)
T TIGR00614 164 PIMALTATASPSVREDILRQLNLKN---------------PQIFCTSFDRPNLYYEVRRK-TPKILEDLLRFIR---KEF 224 (470)
T ss_pred ceEEEecCCCHHHHHHHHHHcCCCC---------------CcEEeCCCCCCCcEEEEEeC-CccHHHHHHHHHH---Hhc
Confidence 9999999996643 334443211 00111111111111111111 1122222222221 123
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCe
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v 354 (584)
++..+||||+++++++.+++.|.+. ++.+..+||+|++++|.++++.|++|..+|||||+++++|||+|+|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V 295 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDV 295 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccc
Confidence 4455699999999999999999875 7889999999999999999999999999999999999999999999
Q ss_pred EEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHhh
Q 007931 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (584)
++||+++. |.|.++|+||+|||||. .+|.|+.+|++.+...
T Consensus 296 ~~VI~~~~------------------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 296 RFVIHYSL------------------PKSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred eEEEEeCC------------------CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 99999888 88999999999999999 7899999999876643
No 41
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7.1e-37 Score=337.55 Aligned_cols=328 Identities=13% Similarity=0.116 Sum_probs=225.6
Q ss_pred CCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHH
Q 007931 30 SSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLA 107 (584)
Q Consensus 30 ~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la 107 (584)
.++|.+...-..+.+.--.--....|.+++.++..++++++++|||+||| +++|.++. .+.+|+++|.++|+
T Consensus 440 ~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLm 513 (1195)
T PLN03137 440 RNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLI 513 (1195)
T ss_pred cCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHH
Confidence 34555544333332222223456788999999999999999999999999 78887653 35689999999999
Q ss_pred HHHHHHHHHHHhCCcceeEEeeEeeccC------cC-CCCCceEEEechHHHHH------HHccCCCCCCCcEEEEeCCC
Q 007931 108 VQAVASRVAEEMGVKVGEEVGYTIRFED------FT-NKDLTAIKFLTDGVLLR------EMMDDPLLTKYSVIMVDEAH 174 (584)
Q Consensus 108 ~~~~~~~~~~~~~~~vg~~vg~~~~~~~------~~-~~~~~~I~~~T~~~ll~------~l~~~~~l~~~~~iIiDE~H 174 (584)
.+++.... ..++......|.....+. .. .....+|+|+||++|.. .+..-.....+++|||||||
T Consensus 514 qDQV~~L~--~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAH 591 (1195)
T PLN03137 514 QDQIMNLL--QANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAH 591 (1195)
T ss_pred HHHHHHHH--hCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcch
Confidence 87776643 245555544443221111 01 11268999999999752 22111124558999999999
Q ss_pred cCccc-hhHHHHHH--HHHHHhcCCceEEEEecccChH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccce
Q 007931 175 ERSIS-TDILLGLL--KKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ 248 (584)
Q Consensus 175 er~~~-~d~l~~~l--~~~~~~~~~~~vi~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 248 (584)
...-+ .+|-..+. ..+....++.+++++|||++.. .+.+.++... + .+.......| .
T Consensus 592 cVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~---------------~-~vfr~Sf~Rp-N 654 (1195)
T PLN03137 592 CVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVN---------------C-VVFRQSFNRP-N 654 (1195)
T ss_pred hhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCC---------------c-EEeecccCcc-c
Confidence 54322 24443332 3345566788999999999554 3444443221 0 1111111111 1
Q ss_pred EEecCCCcchHHHHHHHHHHHHH-hcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcc
Q 007931 249 IHYVEEPVSDYVQAAVSTVLLIH-DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (584)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i 327 (584)
++|...+.... ....+..+. .....+..||||.++.+++.+++.|.+. ++.+.+|||+|++++|..+
T Consensus 655 L~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~~v 722 (1195)
T PLN03137 655 LWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF---------GHKAAFYHGSMDPAQRAFV 722 (1195)
T ss_pred eEEEEeccchh---HHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHHHH
Confidence 22222111111 112222222 2233567899999999999999999775 8889999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEcc
Q 007931 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (584)
Q Consensus 328 ~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~ 406 (584)
++.|.+|+.+|||||+++++|||+|+|++||++++ |.|..+|+||+|||||. .+|.|+.+|
T Consensus 723 qe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl------------------PkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 723 QKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL------------------PKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC------------------CCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 99999999999999999999999999999999998 88999999999999999 789999999
Q ss_pred ChHHHh
Q 007931 407 TEEYFV 412 (584)
Q Consensus 407 ~~~~~~ 412 (584)
+..++.
T Consensus 785 s~~D~~ 790 (1195)
T PLN03137 785 SYSDYI 790 (1195)
T ss_pred cHHHHH
Confidence 977664
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.8e-36 Score=330.63 Aligned_cols=316 Identities=16% Similarity=0.195 Sum_probs=221.9
Q ss_pred hhHHHHhcCCC-chHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHH
Q 007931 40 ASIEKQRQRLP-VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 116 (584)
Q Consensus 40 ~~l~~~~~~lP-~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~ 116 (584)
.++.+...... ....|.+++.++.+++++++++||||||| +++|.++. .+.+|+++|+++|+.+++.. .
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~--l 85 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQ--L 85 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHH--H
Confidence 44555554543 45788899999999999999999999999 67886643 34689999999999876655 2
Q ss_pred HHhCCcceeEEeeEeec------cCcCCCCCceEEEechHHHHHHH-ccCCCCCCCcEEEEeCCCcCccch-hHH--HHH
Q 007931 117 EEMGVKVGEEVGYTIRF------EDFTNKDLTAIKFLTDGVLLREM-MDDPLLTKYSVIMVDEAHERSIST-DIL--LGL 186 (584)
Q Consensus 117 ~~~~~~vg~~vg~~~~~------~~~~~~~~~~I~~~T~~~ll~~l-~~~~~l~~~~~iIiDE~Her~~~~-d~l--~~~ 186 (584)
...|.......+..... ...... ..+++|+||+.+.... .......++++|||||||...-+. ++. ...
T Consensus 86 ~~~gi~~~~~~s~~~~~~~~~~~~~~~~g-~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~ 164 (607)
T PRK11057 86 LANGVAAACLNSTQTREQQLEVMAGCRTG-QIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAA 164 (607)
T ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHhCC-CCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHH
Confidence 34565554333321111 111222 5789999999987432 222224578999999999544222 222 233
Q ss_pred HHHHHHhcCCceEEEEecccChHHHH---HHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHH
Q 007931 187 LKKIQRCRSDLRLIISSATIEAKSMS---AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAA 263 (584)
Q Consensus 187 l~~~~~~~~~~~vi~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 263 (584)
+..+....++.+++++|||++..... +.++... +.+.......+ .+.|.........
T Consensus 165 L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~----------------~~~~~~~~~r~-nl~~~v~~~~~~~--- 224 (607)
T PRK11057 165 LGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND----------------PLIQISSFDRP-NIRYTLVEKFKPL--- 224 (607)
T ss_pred HHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCC----------------eEEEECCCCCC-cceeeeeeccchH---
Confidence 44455566789999999999654333 3332111 02222111111 1111111111111
Q ss_pred HHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCC
Q 007931 264 VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN 343 (584)
Q Consensus 264 ~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~ 343 (584)
..+........++++||||+++++++.+++.|.+. ++.+.++||+|++++|.++++.|++|..+|||||+
T Consensus 225 -~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~ 294 (607)
T PRK11057 225 -DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR---------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV 294 (607)
T ss_pred -HHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec
Confidence 22333333456678999999999999999999875 78899999999999999999999999999999999
Q ss_pred CCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHh
Q 007931 344 IAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (584)
Q Consensus 344 i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (584)
++++|||+|+|++||++++ |.|..+|+||+|||||. .+|.|+.+|+..+..
T Consensus 295 a~~~GIDip~V~~VI~~d~------------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 295 AFGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred hhhccCCCCCcCEEEEeCC------------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 9999999999999999888 88999999999999999 789999999987653
No 43
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=314.68 Aligned_cols=470 Identities=18% Similarity=0.190 Sum_probs=309.4
Q ss_pred HHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc---------cCCCeEEEEeCchHHHHHHHHHHHHHH--hCCcceeEE
Q 007931 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGW---------ADGGRVIACTQPRRLAVQAVASRVAEE--MGVKVGEEV 127 (584)
Q Consensus 59 l~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~---------~~~~~~I~v~~~r~la~~~~~~~~~~~--~~~~vg~~v 127 (584)
..+...+.+.|||||||||||-++..-++.... ...-++||++|.++||++-+.++-.+. +|..|+..+
T Consensus 120 p~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELT 199 (1230)
T KOG0952|consen 120 PVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELT 199 (1230)
T ss_pred hhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEec
Confidence 345578899999999999999555444433211 134578999999999997655544443 378888888
Q ss_pred eeEeeccCcCCCCCceEEEechHHHH---HHHccC-CCCCCCcEEEEeCCC----cCccchhHHHHHHHHHHH-hcCCce
Q 007931 128 GYTIRFEDFTNKDLTAIKFLTDGVLL---REMMDD-PLLTKYSVIMVDEAH----ERSISTDILLGLLKKIQR-CRSDLR 198 (584)
Q Consensus 128 g~~~~~~~~~~~~~~~I~~~T~~~ll---~~l~~~-~~l~~~~~iIiDE~H----er~~~~d~l~~~l~~~~~-~~~~~~ 198 (584)
|..--.... .. .++|+++||+.+- |....+ .+++.+.+|||||+| +|+...+.+.+...+... ....+|
T Consensus 200 GD~ql~~te-i~-~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IR 277 (1230)
T KOG0952|consen 200 GDTQLTKTE-IA-DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIR 277 (1230)
T ss_pred CcchhhHHH-HH-hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheE
Confidence 854333222 23 6999999998864 332323 247889999999999 777765555554444333 457899
Q ss_pred EEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceE--EecCCCcc-------hHHHHHHHHHH
Q 007931 199 LIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQI--HYVEEPVS-------DYVQAAVSTVL 268 (584)
Q Consensus 199 vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~-------~~~~~~~~~i~ 268 (584)
+|++|||+ |.+++++|++..+.. .++...++..|+.. .+.-.... +.-+...+.+.
T Consensus 278 ivgLSATlPN~eDvA~fL~vn~~~--------------glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~ 343 (1230)
T KOG0952|consen 278 IVGLSATLPNYEDVARFLRVNPYA--------------GLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVV 343 (1230)
T ss_pred EEEeeccCCCHHHHHHHhcCCCcc--------------ceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHH
Confidence 99999999 999999999886422 15666666555433 33222211 11122223333
Q ss_pred HHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccC-----CCC---------CeEEEEecCCCCHHHHhcccCCCCCC
Q 007931 269 LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK-----NSS---------GLIILPLYSGLSRAEQEQVFSPTPRG 334 (584)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~-----~~~---------~~~v~~lh~~l~~~~r~~i~~~~~~g 334 (584)
..+ ..+.+++|||+++++..+.++.|.+.....+. ..+ ...+..||+||..++|..+++.|..|
T Consensus 344 e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G 421 (1230)
T KOG0952|consen 344 EFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG 421 (1230)
T ss_pred HHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC
Confidence 333 34678999999999999999999887654321 111 25688999999999999999999999
Q ss_pred CcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEccChHHH
Q 007931 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYF 411 (584)
Q Consensus 335 ~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~ 411 (584)
.++|++||.++++|+|+|+-.++| ..++.||+..|.-. ..+..+.+|..|||||. ..|..+.+-+.+..
T Consensus 422 ~i~vL~cTaTLAwGVNLPA~aViI----KGT~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 422 HIKVLCCTATLAWGVNLPAYAVII----KGTQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred CceEEEecceeeeccCCcceEEEe----cCCcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 999999999999999999888777 35678998876432 56788999999999999 66887777765533
Q ss_pred h---hhCCCC--------------CCCccccc---chhHHHHHHHhcC-----CCCccCC----CCCC-CCC-----HHH
Q 007931 412 V---KEIPAE--------------GIPEMQRS---NLVSCVIQLKALG-----IDNILGF----DWPA-SPP-----PEA 456 (584)
Q Consensus 412 ~---~~~~~~--------------~~pei~r~---~l~~~~L~l~~~~-----~~~~~~~----~~~~-~p~-----~~~ 456 (584)
+ ..+... -..||.-. ++++.+-.++.-- -.|+..+ ..+. -|. .+.
T Consensus 494 ~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l 573 (1230)
T KOG0952|consen 494 DHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRREL 573 (1230)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHH
Confidence 3 212222 22333222 2333333332200 0122221 1111 222 123
Q ss_pred HHHHHHHHHHcCCc--cCC-C--CCCHHHHHHhccCCCChhhhHHHHhhcc-cCChHHHHHHHHhhccCcccccCcccHH
Q 007931 457 MIRALEVLYSLGVL--DDD-A--KLTSPTGFQVAEIPLEPMISKMILSSNE-LGCSEEIITISAVLSIQSIWVSGRGAQK 530 (584)
Q Consensus 457 ~~~al~~L~~~g~i--~~~-~--~lT~~lG~~~~~~pl~p~~~~~l~~~~~-~~c~~~~l~i~a~l~~~~~f~~~~~~~~ 530 (584)
+..++..|.....| |.. + ..|+ +||.++.+++.-+..+.+..... +-..++++.|+++-+.-+-..--.++.+
T Consensus 574 ~~~~~~~L~~~qmi~~D~~t~~~~std-lGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k 652 (1230)
T KOG0952|consen 574 CLVAAMELDKVQMIRFDERTGYLKSTD-LGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKK 652 (1230)
T ss_pred HHHHHHHhhhhheEEEecccceEcccc-hhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHH
Confidence 44566666666444 322 2 6785 99999999999999999999988 7788888888887655432221122333
Q ss_pred HHHHHH------hhccCCCCCHHHHHHHHHH
Q 007931 531 ELDEAK------LRFAAAEGDHVTFLNIYKG 555 (584)
Q Consensus 531 ~~~~~~------~~~~~~~~D~~~~l~~~~~ 555 (584)
+.++.. ..|....|+-..++++|..
T Consensus 653 ~l~el~~~~~~~~~~~~~~gk~nil~q~~Is 683 (1230)
T KOG0952|consen 653 ELKELNEDSCEKYPFGGEKGKVNILLQAYIS 683 (1230)
T ss_pred HHHHHHhcccccccccccchhHHHHHHhhhh
Confidence 333332 2233335788888887764
No 44
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7.4e-35 Score=330.18 Aligned_cols=340 Identities=21% Similarity=0.170 Sum_probs=220.8
Q ss_pred ccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHH--HhcC----ccCCCeEEEEeCchHHH
Q 007931 36 GYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYL--KEAG----WADGGRVIACTQPRRLA 107 (584)
Q Consensus 36 ~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~--~ip~~l--~~~~----~~~~~~~I~v~~~r~la 107 (584)
++...+..+.+..- .+..|.+.+..+.++++++++||||||||. .+|.+- .... ...+..+||++|+|+|+
T Consensus 19 ~~~v~~~~~~~~~~-~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa 97 (876)
T PRK13767 19 RPYVREWFKEKFGT-FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALN 97 (876)
T ss_pred CHHHHHHHHHccCC-CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHH
Confidence 34455555555443 456677777888899999999999999994 444331 1111 12234689999999999
Q ss_pred HHHHHH---------HHHHHhCC-----cceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCC---CCCCCcEEE
Q 007931 108 VQAVAS---------RVAEEMGV-----KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIM 169 (584)
Q Consensus 108 ~~~~~~---------~~~~~~~~-----~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~---~l~~~~~iI 169 (584)
.+.... ..+...|. .++..+|.....+.. .....++|+++||+.|...+.... .+.++++||
T Consensus 98 ~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VV 177 (876)
T PRK13767 98 NDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVI 177 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEE
Confidence 874322 12222233 333344432221111 111257999999999976664432 378999999
Q ss_pred EeCCCcCc--cchhHHHHHHHHHHHhc-CCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEEC-Ccc
Q 007931 170 VDEAHERS--ISTDILLGLLKKIQRCR-SDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRG 244 (584)
Q Consensus 170 iDE~Her~--~~~d~l~~~l~~~~~~~-~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 244 (584)
|||+|+-. .....+...+.++.... .+.++|++|||+ +.+.+++|+.........++. .++... .+.
T Consensus 178 IDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~--------~iv~~~~~k~ 249 (876)
T PRK13767 178 VDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDC--------EIVDARFVKP 249 (876)
T ss_pred EechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCce--------EEEccCCCcc
Confidence 99999432 11233444455555433 678999999999 778899998764211011110 011100 011
Q ss_pred ccceEEec-----CCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCC
Q 007931 245 FNVQIHYV-----EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGL 319 (584)
Q Consensus 245 ~~v~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 319 (584)
+++.+... ..............+..... ..+++||||+|+..++.++..|.+..... ..+..+.+|||+|
T Consensus 250 ~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~---~~~~~i~~hHg~l 324 (876)
T PRK13767 250 FDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEE---YDEDNIGAHHSSL 324 (876)
T ss_pred ceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhh---ccccceeeeeCCC
Confidence 11111110 00111112223333333332 35679999999999999999998754211 1246799999999
Q ss_pred CHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC--
Q 007931 320 SRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-- 397 (584)
Q Consensus 320 ~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-- 397 (584)
++++|..+++.|++|.++|||||+++++|||+|++++||++|. |.|.++|+||+|||||.
T Consensus 325 s~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 325 SREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred CHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCCCC
Confidence 9999999999999999999999999999999999999999877 88999999999999987
Q ss_pred --CCcEEEEccC
Q 007931 398 --RPGKCYRLYT 407 (584)
Q Consensus 398 --~~G~~~~l~~ 407 (584)
..|.++..-.
T Consensus 387 ~~~~g~ii~~~~ 398 (876)
T PRK13767 387 EVSKGRIIVVDR 398 (876)
T ss_pred CCCcEEEEEcCc
Confidence 3477776543
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.1e-35 Score=323.32 Aligned_cols=306 Identities=18% Similarity=0.174 Sum_probs=214.0
Q ss_pred chHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEe
Q 007931 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (584)
Q Consensus 51 ~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg 128 (584)
....|.+++.++.+++++++++|||+||| +++|.++ ..+.+++++|.++|+.+++.. .+..|..+....+
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~------~~g~~lVisPl~sL~~dq~~~--l~~~gi~~~~~~s 85 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL------LKGLTVVISPLISLMKDQVDQ--LRAAGVAAAYLNS 85 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH------cCCcEEEEcCCHHHHHHHHHH--HHHcCCcEEEEeC
Confidence 45678899999999999999999999999 6777654 234678999999998887654 2345665544333
Q ss_pred eEeecc-----CcCCCCCceEEEechHHHHHHHcc-CCCCCCCcEEEEeCCCcCccc-hhHHH--HHHHHHHHhcCCceE
Q 007931 129 YTIRFE-----DFTNKDLTAIKFLTDGVLLREMMD-DPLLTKYSVIMVDEAHERSIS-TDILL--GLLKKIQRCRSDLRL 199 (584)
Q Consensus 129 ~~~~~~-----~~~~~~~~~I~~~T~~~ll~~l~~-~~~l~~~~~iIiDE~Her~~~-~d~l~--~~l~~~~~~~~~~~v 199 (584)
.....+ ........+|+|+||+.+...... .....++++|||||||..+.+ .++-. ..+..+....++.++
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~v 165 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPR 165 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCE
Confidence 211110 011122678999999998643322 222568999999999964422 22322 223334445566779
Q ss_pred EEEecccChHH---HHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCC
Q 007931 200 IISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPP 276 (584)
Q Consensus 200 i~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 276 (584)
+++|||++... +..+++.... ..+ ...-.. ..+.|......+... .+........+
T Consensus 166 i~lTAT~~~~~~~~i~~~l~~~~~---------------~~~-~~~~~r-~nl~~~v~~~~~~~~----~l~~~l~~~~~ 224 (591)
T TIGR01389 166 IALTATADAETRQDIRELLRLADA---------------NEF-ITSFDR-PNLRFSVVKKNNKQK----FLLDYLKKHRG 224 (591)
T ss_pred EEEEeCCCHHHHHHHHHHcCCCCC---------------CeE-ecCCCC-CCcEEEEEeCCCHHH----HHHHHHHhcCC
Confidence 99999996543 4444432210 011 111101 112221111111112 22222233346
Q ss_pred CCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEE
Q 007931 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVY 356 (584)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~ 356 (584)
++.||||+++++++.+++.|... ++.+.++||+|+.++|..+++.|.+|.++|||||+++++|||+|+|++
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~---------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~ 295 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQ---------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRF 295 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCE
Confidence 78999999999999999999764 788999999999999999999999999999999999999999999999
Q ss_pred EEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHh
Q 007931 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (584)
Q Consensus 357 VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (584)
||++++ |.|..+|.||+|||||. .+|.|+.+|+..+..
T Consensus 296 VI~~~~------------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 296 VIHYDM------------------PGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred EEEcCC------------------CCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 999888 88999999999999998 689999999987653
No 46
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-35 Score=292.85 Aligned_cols=386 Identities=19% Similarity=0.221 Sum_probs=256.2
Q ss_pred ccccccCCCCCCccchhhHHHHh-cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCcc------CC
Q 007931 24 FLSSSLSSASSIGYGYASIEKQR-QRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWA------DG 94 (584)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~l~~~~-~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~------~~ 94 (584)
+.+.+|.+|++++.....|.... ..-|...+++.|...+ ++++++|.++|||||| |++|..-.-.... .+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL-~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLL-EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhh-cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 45677999999999888876543 4556666666655555 5888999999999999 8888654332222 23
Q ss_pred CeEEEEeCchHHHHH--HHHHHHHHHhCCc-ceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCCC--CCCCcEE
Q 007931 95 GRVIACTQPRRLAVQ--AVASRVAEEMGVK-VGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVI 168 (584)
Q Consensus 95 ~~~I~v~~~r~la~~--~~~~~~~~~~~~~-vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~i 168 (584)
.-+++++|+|+|+.| .+.+.+.+.+..- .|...|...+...+ ......+|+++|||+|++++.+... +.++.+|
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 446999999999987 3444444433322 24444433322221 1123789999999999999987654 8899999
Q ss_pred EEeCCCcCccchhHHHHH---HHHHHH----hc------CCceEEEEeccc--ChHHHHHHhhcCCCCCCCcc--cccCC
Q 007931 169 MVDEAHERSISTDILLGL---LKKIQR----CR------SDLRLIISSATI--EAKSMSAFFHARKGRRGLEG--VELVP 231 (584)
Q Consensus 169 IiDE~Her~~~~d~l~~~---l~~~~~----~~------~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~--~~~~~ 231 (584)
|+||++ |.++.+|-..+ ++.+-. .. +..+-+++|||+ .+..+++.--..+....... ....+
T Consensus 292 VlDEaD-rlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 292 VLDEAD-RLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred Eecchh-HHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc
Confidence 999999 66555543332 222211 11 236678999999 55666664333332211000 00000
Q ss_pred CCCC------e----EEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhh
Q 007931 232 RLEP------A----ILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEAR 301 (584)
Q Consensus 232 ~~~~------~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~ 301 (584)
...+ . .+..-.-+-....+|...+..-.+-.....+.+........+++||+++.+.++.-++++.+.+.
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 0000 0 00001111223345555555555556667777777777778999999999999999999887654
Q ss_pred hc-------------cCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceee
Q 007931 302 TS-------------KKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFY 368 (584)
Q Consensus 302 ~~-------------~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~ 368 (584)
.. ..-..+..++-+||+|++++|..+|+.|.....-|++|||++++|+|+|+|++||.++.
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~------ 524 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDP------ 524 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCC------
Confidence 31 01112457999999999999999999999999999999999999999999999998666
Q ss_pred cCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEcc--ChHHHhhhCCCCCCCcccccchhH
Q 007931 369 NPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY--TEEYFVKEIPAEGIPEMQRSNLVS 430 (584)
Q Consensus 369 d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~--~~~~~~~~~~~~~~pei~r~~l~~ 430 (584)
|.|.++|+||+||+.|. ..|....+. ++.+|.+.+..+. +-+...++..
T Consensus 525 ------------P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~-~~l~q~~~~~ 576 (708)
T KOG0348|consen 525 ------------PFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH-IMLLQFDMEI 576 (708)
T ss_pred ------------CCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc-chhhccchhh
Confidence 88999999999999998 667665444 4666666333332 3344444443
No 47
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-35 Score=278.03 Aligned_cols=344 Identities=18% Similarity=0.195 Sum_probs=246.5
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCcc-C-CCeEEEEeCch
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-D-GGRVIACTQPR 104 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~-~-~~~~I~v~~~r 104 (584)
..|.+|++++-....+.+....-|...++. .+..|.+++++|-+|.||||||+-...-+++.... + +.-.++++|+|
T Consensus 7 ~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~-cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 7 KPFSILGLSPWLVEQLKALGIKKPTPIQQA-CIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred CchhhcCccHHHHHHHHHhcCCCCCchHhh-hhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 359999999999888888777777766555 55667778889999999999995444334433222 1 23358999999
Q ss_pred HHHHHHHHHH--HHHHhCCcceeEEeeEee-ccCcCCCCCceEEEechHHHHHHHccCC-----CCCCCcEEEEeCCCcC
Q 007931 105 RLAVQAVASR--VAEEMGVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDP-----LLTKYSVIMVDEAHER 176 (584)
Q Consensus 105 ~la~~~~~~~--~~~~~~~~vg~~vg~~~~-~~~~~~~~~~~I~~~T~~~ll~~l~~~~-----~l~~~~~iIiDE~Her 176 (584)
+++.|-..+. +.+.++.++...+|+... .+...-.++.+++++|||++-.++.++. .+.++.++|+|||+ |
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-r 164 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-R 164 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-h
Confidence 9998744333 335667777777874322 2222233489999999999999988762 28999999999999 7
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEE-CCccc--cceEEecC
Q 007931 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV-EGRGF--NVQIHYVE 253 (584)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~v~~~~~~ 253 (584)
.+..+|-..+-......+...+.+++|||++- .+.+.++... ... .+...+. ++... .....|..
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd-~i~ql~~~~i-~k~----------~a~~~e~~~~vstvetL~q~yI~ 232 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITD-TIKQLFGCPI-TKS----------IAFELEVIDGVSTVETLYQGYIL 232 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhh-HHHHhhcCCc-ccc----------cceEEeccCCCCchhhhhhheee
Confidence 77776655555555556666799999999932 2444444322 110 0001111 11111 11122222
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCC
Q 007931 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (584)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~ 333 (584)
.+... .+...-.++....+++.+.++||+++..+++.++..|+.. ++.+..+||.|++.+|...+..|++
T Consensus 233 ~~~~v-kdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs 302 (442)
T KOG0340|consen 233 VSIDV-KDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRS 302 (442)
T ss_pred cchhh-hHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhh
Confidence 21111 1111112222333446789999999999999999999876 8999999999999999999999999
Q ss_pred CCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHh
Q 007931 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (584)
Q Consensus 334 g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (584)
+..+||+||++|.+|+|||.|..||++++ |..+..|+||.||+.|. +.|.++.++++.+.+
T Consensus 303 ~~~~iliaTDVAsRGLDIP~V~LVvN~di------------------Pr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 303 NAARILIATDVASRGLDIPTVELVVNHDI------------------PRDPKDYIHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred cCccEEEEechhhcCCCCCceeEEEecCC------------------CCCHHHHHHhhcchhcccCCcceEEEechhhHH
Confidence 99999999999999999999999999888 88999999999999999 789999999976554
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=9.3e-34 Score=307.23 Aligned_cols=385 Identities=19% Similarity=0.198 Sum_probs=267.0
Q ss_pred ccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHH--HHhcC---ccCCCeEEEEeCchHHHH
Q 007931 36 GYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAG---WADGGRVIACTQPRRLAV 108 (584)
Q Consensus 36 ~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~--l~~~~---~~~~~~~I~v~~~r~la~ 108 (584)
+...++..+.+..-|...|+ .++..+.+|++++|.|||||||| ..+|.+ +++.+ ...+-.++|++|.|+|..
T Consensus 9 ~~~v~~~~~~~~~~~t~~Q~-~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~ 87 (814)
T COG1201 9 DPRVREWFKRKFTSLTPPQR-YAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNN 87 (814)
T ss_pred CHHHHHHHHHhcCCCCHHHH-HHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHH
Confidence 44556666777666665554 56677779999999999999999 445544 22221 112345799999999998
Q ss_pred H--HHHHHHHHHhCCcceeEEeeEeeccCcCC-CCCceEEEechHHHHHHHccCC---CCCCCcEEEEeCCC-----cCc
Q 007931 109 Q--AVASRVAEEMGVKVGEEVGYTIRFEDFTN-KDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAH-----ERS 177 (584)
Q Consensus 109 ~--~~~~~~~~~~~~~vg~~vg~~~~~~~~~~-~~~~~I~~~T~~~ll~~l~~~~---~l~~~~~iIiDE~H-----er~ 177 (584)
+ .-.+...+++|..+...+|.....++... ...++|+++||+.|.-.+.... .|.++.+|||||+| +|+
T Consensus 88 Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG 167 (814)
T COG1201 88 DIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRG 167 (814)
T ss_pred HHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccc
Confidence 7 33344567889999888886655444322 3368999999999987776543 39999999999999 466
Q ss_pred cchhHHHHHHHHHHHhcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC-ccccceEEecCCC
Q 007931 178 ISTDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-RGFNVQIHYVEEP 255 (584)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 255 (584)
......+. ++...-.++|.|++|||. +.+.+++|+.+.... ..++.+.+ +...+++......
T Consensus 168 ~~Lsl~Le---RL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~-------------~~Iv~~~~~k~~~i~v~~p~~~ 231 (814)
T COG1201 168 VQLALSLE---RLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDP-------------CEIVDVSAAKKLEIKVISPVED 231 (814)
T ss_pred hhhhhhHH---HHHhhCcccEEEeehhccCCHHHHHHHhcCCCCc-------------eEEEEcccCCcceEEEEecCCc
Confidence 54444444 444443489999999999 999999999876411 11333332 2333333332222
Q ss_pred c---chHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCC
Q 007931 256 V---SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (584)
Q Consensus 256 ~---~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~ 332 (584)
. ..........+..+.+... .+|||+||+..+|.++..|++.. ...+..|||+++.++|.++++.|+
T Consensus 232 ~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk 301 (814)
T COG1201 232 LIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLK 301 (814)
T ss_pred cccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHh
Confidence 1 1123344555555554433 69999999999999999998873 378999999999999999999999
Q ss_pred CCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC----CCcEEEEccCh
Q 007931 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV----RPGKCYRLYTE 408 (584)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~----~~G~~~~l~~~ 408 (584)
+|..+++|||+.+|-|||+.+|+.||+.+- |.|.+.+.||+||+|+. ..|..|..-..
T Consensus 302 ~G~lravV~TSSLELGIDiG~vdlVIq~~S------------------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~ 363 (814)
T COG1201 302 EGELKAVVATSSLELGIDIGDIDLVIQLGS------------------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRD 363 (814)
T ss_pred cCCceEEEEccchhhccccCCceEEEEeCC------------------cHHHHHHhHhccccccccCCcccEEEEecCHH
Confidence 999999999999999999999999999877 89999999999999987 34555544422
Q ss_pred HHHhh-------hCCCCCCCcccccchhHHHHHHHhcCCCCccC-----------CCCCCCCCHHHHHHHHHHHHH
Q 007931 409 EYFVK-------EIPAEGIPEMQRSNLVSCVIQLKALGIDNILG-----------FDWPASPPPEAMIRALEVLYS 466 (584)
Q Consensus 409 ~~~~~-------~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~-----------~~~~~~p~~~~~~~al~~L~~ 466 (584)
+..+. .--....+++...+|+-+.-++.++-+....+ ++|-+ -+.+.....++.|..
T Consensus 364 dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~-L~~e~f~~v~~~l~~ 438 (814)
T COG1201 364 DLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYAD-LSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhcccccc-CCHHHHHHHHHHHhh
Confidence 22221 01223356677777776666666553322111 12222 245667777777777
No 49
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-37 Score=305.93 Aligned_cols=352 Identities=20% Similarity=0.208 Sum_probs=249.6
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH-----------hcCc
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK-----------EAGW 91 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~-----------~~~~ 91 (584)
-.+.|.+|+++.....+|......-|...+...+..++....+++-.|.|||||| |-||.... ....
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 4567999999999999999999999999999988899988889999999999999 77886651 0000
Q ss_pred cCCCe--EEEEeCchHHHHH--HHHHHHHHHhCCcceeEEee-EeeccCcCCCCCceEEEechHHHHHHHccCCC----C
Q 007931 92 ADGGR--VIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGY-TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL----L 162 (584)
Q Consensus 92 ~~~~~--~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~-~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~----l 162 (584)
....+ .++++|+|+||.| +-...++...++.+...+|. .+..+.......++|+|+|||+|...+..+.. +
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 11223 6999999999987 44455677778888888873 33322222223799999999999999876653 7
Q ss_pred CCCcEEEEeCCCcCccchhH---HHHHHHHHH--HhcCCceEEEEecccChHHHHHHhhcCCCCCC----CcccccCCCC
Q 007931 163 TKYSVIMVDEAHERSISTDI---LLGLLKKIQ--RCRSDLRLIISSATIEAKSMSAFFHARKGRRG----LEGVELVPRL 233 (584)
Q Consensus 163 ~~~~~iIiDE~Her~~~~d~---l~~~l~~~~--~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 233 (584)
.++.++|+||++ |.+.-+. +..+++.+. +.+...|.+++|||+.....+..-........ ...++..
T Consensus 339 k~vkcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L--- 414 (731)
T KOG0347|consen 339 KKVKCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL--- 414 (731)
T ss_pred hhceEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH---
Confidence 889999999999 7765544 344455444 24466799999999955432221111100000 0000000
Q ss_pred CCeEEEECCccccceEEecCCCcchHHHHHHHHHHHH-----------HhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhh
Q 007931 234 EPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLI-----------HDKEPPGDILVFLTGQDDIDATIQLLTEEART 302 (584)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~ 302 (584)
...+.+.+. | ++.-. .+...-.....+..+.. ....-+|.+||||++...+.+++-+|...
T Consensus 415 -mk~ig~~~k--p-kiiD~-t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L--- 486 (731)
T KOG0347|consen 415 -MKKIGFRGK--P-KIIDL-TPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL--- 486 (731)
T ss_pred -HHHhCccCC--C-eeEec-CcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc---
Confidence 000001111 1 11111 11111112222222111 11234789999999999999999999765
Q ss_pred ccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeec
Q 007931 303 SKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPI 382 (584)
Q Consensus 303 ~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~ 382 (584)
++..+++|+.|.+.+|.+.++.|++..--||+||++|++|+|||+|.|||+|.. |.
T Consensus 487 ------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqV------------------Pr 542 (731)
T KOG0347|consen 487 ------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQV------------------PR 542 (731)
T ss_pred ------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeec------------------CC
Confidence 888999999999999999999999999999999999999999999999999877 77
Q ss_pred cHHhHHHhccccCCC-CCcEEEEccChHHHh
Q 007931 383 SKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (584)
Q Consensus 383 s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (584)
+..-|+||.||+.|+ ..|....++.+.+..
T Consensus 543 tseiYVHRSGRTARA~~~Gvsvml~~P~e~~ 573 (731)
T KOG0347|consen 543 TSEIYVHRSGRTARANSEGVSVMLCGPQEVG 573 (731)
T ss_pred ccceeEecccccccccCCCeEEEEeChHHhH
Confidence 888899999999999 889999999987643
No 50
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-35 Score=294.58 Aligned_cols=339 Identities=19% Similarity=0.198 Sum_probs=240.9
Q ss_pred ccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH--hcCcc--------CCC
Q 007931 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAGWA--------DGG 95 (584)
Q Consensus 28 ~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~--~~~~~--------~~~ 95 (584)
+|++..+.......+...+..-|..-+|. -+..+..++.++++|+|||||| +++|.+-. +.... ...
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~-sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKY-SIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceee-ccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 56666666655556666666666655555 4577888889999999999999 88886533 33221 125
Q ss_pred eEEEEeCchHHHHHHH--HHHHHHHhCCcceeEEee-EeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEe
Q 007931 96 RVIACTQPRRLAVQAV--ASRVAEEMGVKVGEEVGY-TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVD 171 (584)
Q Consensus 96 ~~I~v~~~r~la~~~~--~~~~~~~~~~~vg~~vg~-~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiD 171 (584)
.+++++|+|+|+.|-. ++++.-..+.......|. ..+.+.......++|+++|||+|...+..... +.++.++|+|
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLD 233 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLD 233 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEec
Confidence 6799999999998733 444443334443333332 22233333344899999999999999877665 9999999999
Q ss_pred CCCcCccc-hhHHHHHHHHHHHhc----CCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc
Q 007931 172 EAHERSIS-TDILLGLLKKIQRCR----SDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG 244 (584)
Q Consensus 172 E~Her~~~-~d~l~~~l~~~~~~~----~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (584)
||+ |.++ ..|...+-+.+.... .+.+.+++|||. +...++.+|-.... ....+-.+.+..
T Consensus 234 EAD-rMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~y------------i~laV~rvg~~~ 300 (482)
T KOG0335|consen 234 EAD-RMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNY------------IFLAVGRVGSTS 300 (482)
T ss_pred chH-HhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccc------------eEEEEeeecccc
Confidence 999 7777 777666666555432 467899999999 44555555543310 001122233333
Q ss_pred ccceEEecCCCcchHHHHHHHHHHHHHhcCCCC-----CEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCC
Q 007931 245 FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPG-----DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGL 319 (584)
Q Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 319 (584)
..+..........+.....++.+.........+ .++|||.+++.+..++..|... ++....+||..
T Consensus 301 ~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~sIhg~~ 371 (482)
T KOG0335|consen 301 ENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---------GYPAKSIHGDR 371 (482)
T ss_pred ccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---------CCCceeecchh
Confidence 334333333333333333333333222111234 7999999999999999999765 88999999999
Q ss_pred CHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-C
Q 007931 320 SRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-R 398 (584)
Q Consensus 320 ~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~ 398 (584)
++.+|.+.++.|++|...|+||||++++|+|||+|++||++++ |....+|+||+||+||. .
T Consensus 372 tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDm------------------P~d~d~YvHRIGRTGR~Gn 433 (482)
T KOG0335|consen 372 TQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDM------------------PADIDDYVHRIGRTGRVGN 433 (482)
T ss_pred hhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeec------------------CcchhhHHHhccccccCCC
Confidence 9999999999999999999999999999999999999999888 88899999999999999 7
Q ss_pred CcEEEEccC
Q 007931 399 PGKCYRLYT 407 (584)
Q Consensus 399 ~G~~~~l~~ 407 (584)
.|.+..|+.
T Consensus 434 ~G~atsf~n 442 (482)
T KOG0335|consen 434 GGRATSFFN 442 (482)
T ss_pred CceeEEEec
Confidence 899999998
No 51
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.5e-34 Score=284.90 Aligned_cols=333 Identities=19% Similarity=0.211 Sum_probs=226.4
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcce---e
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG---E 125 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg---~ 125 (584)
+-...||..|......+ +++++.|||-|||+++...+.......++++|+++|++-|+.|+ +..+.+.++.+.. .
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh-~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQH-AEFCRKVTGIPEDEIAA 91 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHH-HHHHHHHhCCChhheee
Confidence 34456777766655554 69999999999998877666644333344799999999999864 4445666666444 4
Q ss_pred EEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
.+|-....+........+|+|+||+.+.+-+..+.. +.+++++|+|||| |.........+.+...+..+++.+++|||
T Consensus 92 ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTA 170 (542)
T COG1111 92 LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTA 170 (542)
T ss_pred ecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEec
Confidence 444221111222233689999999999999888776 9999999999999 88777777777888888888999999999
Q ss_pred cc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceE---------------------------------
Q 007931 205 TI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQI--------------------------------- 249 (584)
Q Consensus 205 T~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------------------------------- 249 (584)
|+ +.+.+.+...+..........+..+...+.+-.+.-....|+.
T Consensus 171 SPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~ 250 (542)
T COG1111 171 SPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSP 250 (542)
T ss_pred CCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCc
Confidence 99 7788887776654332211111111111111000000000000
Q ss_pred --------------EecCCCcc-------------------------------hHH------------------------
Q 007931 250 --------------HYVEEPVS-------------------------------DYV------------------------ 260 (584)
Q Consensus 250 --------------~~~~~~~~-------------------------------~~~------------------------ 260 (584)
........ .|+
T Consensus 251 ~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~ 330 (542)
T COG1111 251 VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYF 330 (542)
T ss_pred ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhh
Confidence 00000000 000
Q ss_pred --------------------HHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEE------
Q 007931 261 --------------------QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILP------ 314 (584)
Q Consensus 261 --------------------~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~------ 314 (584)
+.+...+........+..++||+.-++.++.+.+.|.+... ...+.+
T Consensus 331 ~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~-------~~~~rFiGQa~r 403 (542)
T COG1111 331 KRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI-------KARVRFIGQASR 403 (542)
T ss_pred HHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCC-------cceeEEeecccc
Confidence 00111112222344557899999999999999999988632 222122
Q ss_pred -ecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccc
Q 007931 315 -LYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGR 393 (584)
Q Consensus 315 -lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GR 393 (584)
...||++.+|+++++.|++|..+|||||+++|.|+|||+++.||.+ +| -.|..-++||.||
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifY--------Ep----------vpSeIR~IQR~GR 465 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFY--------EP----------VPSEIRSIQRKGR 465 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEe--------cC----------CcHHHHHHHhhCc
Confidence 2358999999999999999999999999999999999999999974 43 4577889999999
Q ss_pred cCCCCCcEEEEccChH
Q 007931 394 AGRVRPGKCYRLYTEE 409 (584)
Q Consensus 394 aGR~~~G~~~~l~~~~ 409 (584)
+||.++|.+|.|+++.
T Consensus 466 TGR~r~Grv~vLvt~g 481 (542)
T COG1111 466 TGRKRKGRVVVLVTEG 481 (542)
T ss_pred cccCCCCeEEEEEecC
Confidence 9999999999999876
No 52
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-34 Score=282.32 Aligned_cols=353 Identities=21% Similarity=0.206 Sum_probs=264.5
Q ss_pred cccccCCCccccccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhc--
Q 007931 14 LLDDEEGGVVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEA-- 89 (584)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~-- 89 (584)
+...+..+.- +.++|...+++...+.++.+.-..-|... |.+++.....++.++-.|-|||||| ++.|.+....
T Consensus 211 lrv~g~s~~r-pvtsfeh~gfDkqLm~airk~Ey~kptpi-q~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq 288 (731)
T KOG0339|consen 211 LRVSGSSPPR-PVTSFEHFGFDKQLMTAIRKSEYEKPTPI-QCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQ 288 (731)
T ss_pred ceeccCCCCC-CcchhhhcCchHHHHHHHhhhhcccCCcc-cccccccccccccchheeeccCcchhHHHHHHHHHhcch
Confidence 3344444544 45678889999988888877766666543 4556666677888999999999999 5556544321
Q ss_pred -Cc--cCCCeEEEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCC-CC
Q 007931 90 -GW--ADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP-LL 162 (584)
Q Consensus 90 -~~--~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~-~l 162 (584)
.+ ..+.-.+||+|+|+++.| +.++++.+..|+.+....|....++.. .....+.|+|||||+|+.++.-.. .+
T Consensus 289 ~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~ 368 (731)
T KOG0339|consen 289 PELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNL 368 (731)
T ss_pred hhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccc
Confidence 11 123445899999999998 778888899999888888755444432 222479999999999999886554 49
Q ss_pred CCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEE
Q 007931 163 TKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV 240 (584)
Q Consensus 163 ~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (584)
.+++++|+||++ |..+++|...+-......+++.|.+++|||+ .++.+++=+-..+++... ..+
T Consensus 369 ~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVq-------------g~v 434 (731)
T KOG0339|consen 369 SRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQ-------------GEV 434 (731)
T ss_pred eeeeEEEEechh-hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEE-------------eeh
Confidence 999999999999 8999999888877777889999999999999 566666655444432110 011
Q ss_pred CCccccce-EEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCC
Q 007931 241 EGRGFNVQ-IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGL 319 (584)
Q Consensus 241 ~~~~~~v~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 319 (584)
....-.+. ..+.-..... ..-..+.++......|++|+|+.-+.++++++..|.-. ++.|..+||++
T Consensus 435 gean~dITQ~V~V~~s~~~---Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk---------~~~v~llhgdk 502 (731)
T KOG0339|consen 435 GEANEDITQTVSVCPSEEK---KLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK---------GFNVSLLHGDK 502 (731)
T ss_pred hccccchhheeeeccCcHH---HHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc---------cceeeeecCch
Confidence 11111111 1111111112 22223344455567799999999999999999988654 89999999999
Q ss_pred CHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-C
Q 007931 320 SRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-R 398 (584)
Q Consensus 320 ~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~ 398 (584)
.+.+|.+++..|+.+...|+++|+++++|+|||++..||++++ ..+...+.||+||+||. .
T Consensus 503 dqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~------------------ardIdththrigrtgRag~ 564 (731)
T KOG0339|consen 503 DQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDF------------------ARDIDTHTHRIGRTGRAGE 564 (731)
T ss_pred hhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccc------------------cchhHHHHHHhhhcccccc
Confidence 9999999999999999999999999999999999999999887 56788888999999999 7
Q ss_pred CcEEEEccChHHHh
Q 007931 399 PGKCYRLYTEEYFV 412 (584)
Q Consensus 399 ~G~~~~l~~~~~~~ 412 (584)
.|..|.|+++.+-+
T Consensus 565 kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 565 KGVAYTLVTEKDAE 578 (731)
T ss_pred cceeeEEechhhHH
Confidence 79999999987654
No 53
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=271.10 Aligned_cols=346 Identities=19% Similarity=0.206 Sum_probs=255.3
Q ss_pred CccccccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhc-CCEEEEEcCCCChHHHHHHHHHHh--cCccCCCeE
Q 007931 21 GVVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVET-HATTIIVGETGSGKTTQIPQYLKE--AGWADGGRV 97 (584)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~-~~~viv~a~TGsGKT~~ip~~l~~--~~~~~~~~~ 97 (584)
.+.++.+||.+|.+.+...+.+..+..+-|...+..++.-.+.. .+++|.++..|+|||+....-++. ..-.....+
T Consensus 84 sPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~ 163 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQC 163 (477)
T ss_pred CCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCc
Confidence 45667889999999999999999999999987776665544433 578999999999999544433332 222233567
Q ss_pred EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCC--CCceEEEechHHHHHHHcc-CCC-CCCCcEEEEeCC
Q 007931 98 IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNK--DLTAIKFLTDGVLLREMMD-DPL-LTKYSVIMVDEA 173 (584)
Q Consensus 98 I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~--~~~~I~~~T~~~ll~~l~~-~~~-l~~~~~iIiDE~ 173 (584)
++++|+|+++-|.. .+-.++|--.+....|.++....... -..+|+++|||.+++++.. ... ++++.++|+|||
T Consensus 164 iCLaPtrELA~Q~~--eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEA 241 (477)
T KOG0332|consen 164 ICLAPTRELAPQTG--EVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEA 241 (477)
T ss_pred eeeCchHHHHHHHH--HHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecch
Confidence 88899999998732 23445555445555677775532221 1578999999999998876 333 889999999999
Q ss_pred CcCccchh-HHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEEC---Cccccc
Q 007931 174 HERSISTD-ILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE---GRGFNV 247 (584)
Q Consensus 174 Her~~~~d-~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v 247 (584)
+. .+++. +...-++......++.+++++|||. ....|+.-+-..+. .+.+. -...++
T Consensus 242 D~-Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n----------------~i~Lk~eel~L~~I 304 (477)
T KOG0332|consen 242 DV-MIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNAN----------------VIILKREELALDNI 304 (477)
T ss_pred hh-hhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCc----------------eeeeehhhccccch
Confidence 93 33332 3333444444456799999999999 33445443322221 22222 234577
Q ss_pred eEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcc
Q 007931 248 QIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (584)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i 327 (584)
+.+|......+. ..+.+..+.....-|+.+|||.+++.++.++..+.+. ++.|..+||.|.-++|..+
T Consensus 305 kQlyv~C~~~~~---K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~---------Gh~V~~l~G~l~~~~R~~i 372 (477)
T KOG0332|consen 305 KQLYVLCACRDD---KYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE---------GHQVSLLHGDLTVEQRAAI 372 (477)
T ss_pred hhheeeccchhh---HHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------CceeEEeeccchhHHHHHH
Confidence 777777665442 3444555555566788999999999999999999887 8999999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEcc
Q 007931 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (584)
Q Consensus 328 ~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~ 406 (584)
.+.|++|.-||||+||+.++|||++.|.+||++++.- .|+. -.+.+.|+||+||+||. +.|.++.++
T Consensus 373 i~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~--~~~~----------~pD~etYlHRiGRtGRFGkkG~a~n~v 440 (477)
T KOG0332|consen 373 IDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPV--KYTG----------EPDYETYLHRIGRTGRFGKKGLAINLV 440 (477)
T ss_pred HHHHhcCcceEEEEechhhcccccceEEEEEecCCcc--ccCC----------CCCHHHHHHHhcccccccccceEEEee
Confidence 9999999999999999999999999999999988721 1111 25688999999999999 889999988
Q ss_pred ChH
Q 007931 407 TEE 409 (584)
Q Consensus 407 ~~~ 409 (584)
...
T Consensus 441 ~~~ 443 (477)
T KOG0332|consen 441 DDK 443 (477)
T ss_pred ccc
Confidence 754
No 54
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-34 Score=277.40 Aligned_cols=340 Identities=19% Similarity=0.239 Sum_probs=247.4
Q ss_pred cccccCC-CCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCc------cCCC
Q 007931 25 LSSSLSS-ASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW------ADGG 95 (584)
Q Consensus 25 ~~~~~~~-l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~------~~~~ 95 (584)
++.+|.+ +.--+....++.+...+-|...+ .+....+.++.+++.+|.||+||| ++.|-++..... ..+.
T Consensus 217 P~ctFddAFq~~pevmenIkK~GFqKPtPIq-SQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p 295 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIKKTGFQKPTPIQ-SQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGP 295 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHHhccCCCCCcch-hcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCC
Confidence 3445555 33333344455555555554433 334556678888999999999999 777766543321 1234
Q ss_pred eEEEEeCchHHHHHHHHHH-HHHHhCCcceeEEeeEeeccCcCC-CCCceEEEechHHHHHHHccCCC-CCCCcEEEEeC
Q 007931 96 RVIACTQPRRLAVQAVASR-VAEEMGVKVGEEVGYTIRFEDFTN-KDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDE 172 (584)
Q Consensus 96 ~~I~v~~~r~la~~~~~~~-~~~~~~~~vg~~vg~~~~~~~~~~-~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE 172 (584)
.+++++|+|+|+.+--.+- .-...|....+..|...|.+.... .....|+++||++|.+....+.. +..+.++|+||
T Consensus 296 ~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDE 375 (629)
T KOG0336|consen 296 GVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDE 375 (629)
T ss_pred ceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecc
Confidence 5789999999988733322 223345554555665555443221 23689999999999999887776 99999999999
Q ss_pred CCcCccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc-----c
Q 007931 173 AHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-----F 245 (584)
Q Consensus 173 ~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 245 (584)
|+ |.++++|-..+.+.++..+++.++++.|||. .+..+++-+...+ ++...|.. .
T Consensus 376 AD-rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep-----------------~~v~vGsLdL~a~~ 437 (629)
T KOG0336|consen 376 AD-RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEP-----------------MIVYVGSLDLVAVK 437 (629)
T ss_pred hh-hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCc-----------------eEEEecccceeeee
Confidence 99 8999999999999999999999999999999 4566766444444 33333322 3
Q ss_pred cceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHh
Q 007931 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (584)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (584)
.|+..+......+... .+..... ......+++|||..+..+..+...|.- .++....+||+-.+.+|+
T Consensus 438 sVkQ~i~v~~d~~k~~-~~~~f~~--~ms~ndKvIiFv~~K~~AD~LSSd~~l---------~gi~~q~lHG~r~Q~DrE 505 (629)
T KOG0336|consen 438 SVKQNIIVTTDSEKLE-IVQFFVA--NMSSNDKVIIFVSRKVMADHLSSDFCL---------KGISSQSLHGNREQSDRE 505 (629)
T ss_pred eeeeeEEecccHHHHH-HHHHHHH--hcCCCceEEEEEechhhhhhccchhhh---------cccchhhccCChhhhhHH
Confidence 3444443333333332 2222222 224457799999999887777766643 388899999999999999
Q ss_pred cccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEE
Q 007931 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (584)
Q Consensus 326 ~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (584)
..++.|+.|.++|||||+++.+|+|+|+|++|+++++ |....+|+||+||+||+ +.|..+.
T Consensus 506 ~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF------------------P~nIeeYVHRvGrtGRaGr~G~sis 567 (629)
T KOG0336|consen 506 MALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF------------------PRNIEEYVHRVGRTGRAGRTGTSIS 567 (629)
T ss_pred HHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC------------------CccHHHHHHHhcccccCCCCcceEE
Confidence 9999999999999999999999999999999999999 88999999999999999 8899999
Q ss_pred ccChHHHhh
Q 007931 405 LYTEEYFVK 413 (584)
Q Consensus 405 l~~~~~~~~ 413 (584)
+++..++..
T Consensus 568 ~lt~~D~~~ 576 (629)
T KOG0336|consen 568 FLTRNDWSM 576 (629)
T ss_pred EEehhhHHH
Confidence 999877653
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.4e-33 Score=322.34 Aligned_cols=294 Identities=20% Similarity=0.194 Sum_probs=193.2
Q ss_pred EEcCCCChHH--HHHHHHH--HhcC--------ccCCCeEEEEeCchHHHHHHHHHH------HH---H-----HhCCcc
Q 007931 70 IVGETGSGKT--TQIPQYL--KEAG--------WADGGRVIACTQPRRLAVQAVASR------VA---E-----EMGVKV 123 (584)
Q Consensus 70 v~a~TGsGKT--~~ip~~l--~~~~--------~~~~~~~I~v~~~r~la~~~~~~~------~~---~-----~~~~~v 123 (584)
|++||||||| +.+|.+. .... ...+.++||++|+|+|+.+..... +. . ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999 4455332 1111 012467899999999998744321 11 1 134566
Q ss_pred eeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccC--CCCCCCcEEEEeCCCcCccc--hhHHHHHHHHHHHh-cCCc
Q 007931 124 GEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIS--TDILLGLLKKIQRC-RSDL 197 (584)
Q Consensus 124 g~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~--~~l~~~~~iIiDE~Her~~~--~d~l~~~l~~~~~~-~~~~ 197 (584)
+..+|.....+.. .....++|+++||++|...+.++ ..++++++|||||+|+..-. ...+...+.++... ..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 6666644333321 11225899999999998876543 24899999999999943211 12333444454443 4578
Q ss_pred eEEEEeccc-ChHHHHHHhhcC-CCCCCCcccccCCCCCCeEEEEC-CccccceEEecCCC-------------------
Q 007931 198 RLIISSATI-EAKSMSAFFHAR-KGRRGLEGVELVPRLEPAILSVE-GRGFNVQIHYVEEP------------------- 255 (584)
Q Consensus 198 ~vi~~SAT~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~------------------- 255 (584)
|+|++|||+ |.+.+++|++.. +.. ++..+ .+..++++......
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~---------------Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r 225 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVT---------------VVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGR 225 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEE---------------EECCCCCcccceEEEEecCchhhccccccccccccchhh
Confidence 999999999 888999999753 211 11000 01111111110000
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhcc------------------------CCCCCeE
Q 007931 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSK------------------------KNSSGLI 311 (584)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~------------------------~~~~~~~ 311 (584)
...........++... ...+++||||+|+..++.++..|++...+.. .......
T Consensus 226 ~~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 303 (1490)
T PRK09751 226 EGSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFI 303 (1490)
T ss_pred hhhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccccccee
Confidence 0000011111222222 2357799999999999999999987532100 0011234
Q ss_pred EEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhc
Q 007931 312 ILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRA 391 (584)
Q Consensus 312 v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~ 391 (584)
+..|||+|++++|..+++.|++|++++||||+.+|.||||++|++||++|. |.|.++|+||+
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRi 365 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRI 365 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHh
Confidence 789999999999999999999999999999999999999999999999887 99999999999
Q ss_pred cccCCCC
Q 007931 392 GRAGRVR 398 (584)
Q Consensus 392 GRaGR~~ 398 (584)
|||||..
T Consensus 366 GRAGR~~ 372 (1490)
T PRK09751 366 GRAGHQV 372 (1490)
T ss_pred CCCCCCC
Confidence 9999983
No 56
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.1e-32 Score=309.33 Aligned_cols=317 Identities=16% Similarity=0.168 Sum_probs=209.5
Q ss_pred cchhhHHHHhcCCCchHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHH
Q 007931 37 YGYASIEKQRQRLPVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQA 110 (584)
Q Consensus 37 ~~~~~l~~~~~~lP~~~~~~~il~~l~~~------~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~ 110 (584)
..+.++.+. ........|.+.+..+.++ .+.+++||||||||..+-..++.. ...+.++++++|++.|+.|.
T Consensus 439 ~~~~~~~~~-~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~a-l~~g~qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 439 EWQQEFEDS-FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKA-VLDGKQVAVLVPTTLLAQQH 516 (926)
T ss_pred HHHHHHHHh-CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHH-HHhCCeEEEEeCcHHHHHHH
Confidence 334444333 2223355666666666553 579999999999994433333322 22456789999999998874
Q ss_pred HHH--HHHHHhCCcceeEEeeEeeccCc-----CCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHH
Q 007931 111 VAS--RVAEEMGVKVGEEVGYTIRFEDF-----TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDIL 183 (584)
Q Consensus 111 ~~~--~~~~~~~~~vg~~vg~~~~~~~~-----~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l 183 (584)
... .....++..++...|.....+.. ......+|+|+||..+ ..+..+.++++|||||+|..+..
T Consensus 517 ~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv~---- 588 (926)
T TIGR00580 517 FETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGVK---- 588 (926)
T ss_pred HHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccccchh----
Confidence 433 22233455555555533211111 1112579999999533 33445899999999999953322
Q ss_pred HHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEEC-CccccceEEecCCCcchHHHH
Q 007931 184 LGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRGFNVQIHYVEEPVSDYVQA 262 (584)
Q Consensus 184 ~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 262 (584)
....+.....+.++++||||+.+..+...+.... .+..+..+ ....+++.++..... ..
T Consensus 589 --~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~--------------d~s~I~~~p~~R~~V~t~v~~~~~-~~--- 648 (926)
T TIGR00580 589 --QKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIR--------------DLSIIATPPEDRLPVRTFVMEYDP-EL--- 648 (926)
T ss_pred --HHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCC--------------CcEEEecCCCCccceEEEEEecCH-HH---
Confidence 2233344567889999999997766554332211 11122221 223455554443221 11
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeC
Q 007931 263 AVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST 342 (584)
Q Consensus 263 ~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT 342 (584)
....+.... ..+++++||||+.++++.+++.|.+.. +++.+..+||+|++++|.++++.|++|+.+|||||
T Consensus 649 i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT 719 (926)
T TIGR00580 649 VREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELV-------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT 719 (926)
T ss_pred HHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 111222211 246789999999999999999998753 46889999999999999999999999999999999
Q ss_pred CCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 343 NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 343 ~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
+++|+|||+|++++||..+. . ..+.+++.||+||+||. +.|.||.++++.
T Consensus 720 ~iie~GIDIp~v~~VIi~~a--------~---------~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 720 TIIETGIDIPNANTIIIERA--------D---------KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ChhhcccccccCCEEEEecC--------C---------CCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999999999996443 1 12456788999999999 889999998653
No 57
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.9e-32 Score=297.29 Aligned_cols=343 Identities=17% Similarity=0.167 Sum_probs=202.4
Q ss_pred CCchHHHHHHHHHHhcCC-EEEEEcCCCChHHHHHHHHHHhcCc-c-CCCeEEEEeCchHHHHH--HHHHHHHHHh----
Q 007931 49 LPVYKYRTAILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGW-A-DGGRVIACTQPRRLAVQ--AVASRVAEEM---- 119 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~-~viv~a~TGsGKT~~ip~~l~~~~~-~-~~~~~I~v~~~r~la~~--~~~~~~~~~~---- 119 (584)
...+.+|.+++..+..++ .+++.+|||||||..+..+++.... . ...+.|+++|+|+|+.| ..++++.+.+
T Consensus 14 ~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~ 93 (844)
T TIGR02621 14 YSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVP 93 (844)
T ss_pred CCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccc
Confidence 336777777787777776 6888999999999544333332111 1 12345668899999887 3444555544
Q ss_pred -------------------CCcceeEEeeE-eeccCcCCCCCceEEEechHHHHHHHccC-------------CCCCCCc
Q 007931 120 -------------------GVKVGEEVGYT-IRFEDFTNKDLTAIKFLTDGVLLREMMDD-------------PLLTKYS 166 (584)
Q Consensus 120 -------------------~~~vg~~vg~~-~~~~~~~~~~~~~I~~~T~~~ll~~l~~~-------------~~l~~~~ 166 (584)
++.+...+|.. ...+....+..++|+|+|++.+.+..... ..+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~ 173 (844)
T TIGR02621 94 EVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDA 173 (844)
T ss_pred hhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccce
Confidence 24445555532 21222223336899999977665544310 1268899
Q ss_pred EEEEeCCCcCccchhHHHHHHHHHHHh--cCCceEEEEecccCh--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC
Q 007931 167 VIMVDEAHERSISTDILLGLLKKIQRC--RSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG 242 (584)
Q Consensus 167 ~iIiDE~Her~~~~d~l~~~l~~~~~~--~~~~~vi~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (584)
+||+||||......+.+..+++.+... ..+.|+++||||++. ..+...+...+.. +.+..
T Consensus 174 ~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~----------------i~V~~ 237 (844)
T TIGR02621 174 LIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK----------------HPVLK 237 (844)
T ss_pred EEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCce----------------eeccc
Confidence 999999994333333333333322111 123799999999943 3444444433311 11111
Q ss_pred cccc--ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCC
Q 007931 243 RGFN--VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLS 320 (584)
Q Consensus 243 ~~~~--v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 320 (584)
+... -..++............+..+.... ...++++||||+|+++++.+++.|.+. ++ ..+||+|+
T Consensus 238 ~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g~--~lLHG~m~ 305 (844)
T TIGR02621 238 KRLAAKKIVKLVPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE---------KF--ELLTGTLR 305 (844)
T ss_pred ccccccceEEEEecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc---------CC--eEeeCCCC
Confidence 1000 0011222222222223333333332 245678999999999999999999764 33 89999999
Q ss_pred HHHHh-----cccCCCCC----CC-------cEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccH
Q 007931 321 RAEQE-----QVFSPTPR----GK-------RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISK 384 (584)
Q Consensus 321 ~~~r~-----~i~~~~~~----g~-------~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~ 384 (584)
+.+|. ++++.|++ |. .+|||||+++|+||||+. ++||.. ..+.
T Consensus 306 q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d--------------------~aP~ 364 (844)
T TIGR02621 306 GAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCD--------------------LAPF 364 (844)
T ss_pred HHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEEC--------------------CCCH
Confidence 99999 77888876 43 689999999999999997 666652 2235
Q ss_pred HhHHHhccccCCC-CC-cEEEEccChHHHhhhCCCCCCCcccccchhHHHHHHHhcCC
Q 007931 385 ASARQRAGRAGRV-RP-GKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGI 440 (584)
Q Consensus 385 ~~~~QR~GRaGR~-~~-G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~ 440 (584)
++|+||+||+||. .. |..+.+++.+.....-...-.|+++...+..+.+.....|.
T Consensus 365 esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~~ 422 (844)
T TIGR02621 365 ESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKLQQLKGK 422 (844)
T ss_pred HHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHHHhcccc
Confidence 8999999999998 32 33244443311111011111356776655555554444443
No 58
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=5e-32 Score=286.81 Aligned_cols=337 Identities=20% Similarity=0.256 Sum_probs=219.1
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc-CccCCCeEEEEeCchHHHHHHHHHHHHHHhCCc--c
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVK--V 123 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~-~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~--v 123 (584)
..+++..||.+|.+... ++++||++|||+|||+++...++++ .+.+++++|+.+|++-|..|+.+. +.. ++.. +
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~-~~~-~~~~~~~ 135 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIAC-FSI-YLIPYSV 135 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHH-Hhh-ccCcccc
Confidence 67899999999998888 9999999999999998877666654 455678999999999999998833 332 3322 1
Q ss_pred eeEEeeEee-ccCcCCCCCceEEEechHHHHHHHccCCC--CCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceE
Q 007931 124 GEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRL 199 (584)
Q Consensus 124 g~~vg~~~~-~~~~~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~v 199 (584)
-...|..+. ..........+|.|+||+.|.+-|.+... |+.++++|||||| |....-..-.+.+.+.. .....|+
T Consensus 136 T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~qI 214 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQI 214 (746)
T ss_pred eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccccE
Confidence 111121111 11111122689999999999998876533 7899999999999 55444344444444443 3334499
Q ss_pred EEEeccc--ChHHHHHHhhcCCCCCCCccc------------------c---------------------------cCCC
Q 007931 200 IISSATI--EAKSMSAFFHARKGRRGLEGV------------------E---------------------------LVPR 232 (584)
Q Consensus 200 i~~SAT~--~~~~~~~~~~~~~~~~~~~~~------------------~---------------------------~~~~ 232 (584)
+++|||+ +.+...++..+....-..+.. + ..+.
T Consensus 215 LgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~ 294 (746)
T KOG0354|consen 215 LGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEI 294 (746)
T ss_pred EEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccc
Confidence 9999999 666666665442211111100 0 0000
Q ss_pred C------CCeEEEECCc---cccceEE---e------------------------------cCCCc--------------
Q 007931 233 L------EPAILSVEGR---GFNVQIH---Y------------------------------VEEPV-------------- 256 (584)
Q Consensus 233 ~------~~~~~~~~~~---~~~v~~~---~------------------------------~~~~~-------------- 256 (584)
. ...++..+.. ..+-..+ + .....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~ 374 (746)
T KOG0354|consen 295 SDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIR 374 (746)
T ss_pred ccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhH
Confidence 0 0000000000 0000000 0 00000
Q ss_pred -------------------chHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEec-
Q 007931 257 -------------------SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY- 316 (584)
Q Consensus 257 -------------------~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh- 316 (584)
...++...+.+.......+...++||+.+|+.+..+..+|.+... ....+..-++.-+
T Consensus 375 ~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~--~~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 375 NFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHE--LGIKAEIFIGQGKS 452 (746)
T ss_pred HHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhh--cccccceeeecccc
Confidence 001122233334444455667899999999999999999985221 1112233333333
Q ss_pred ---CCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccc
Q 007931 317 ---SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGR 393 (584)
Q Consensus 317 ---~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GR 393 (584)
.+|++.+|+++++.|++|+.+|||||+++|+|+||+.++.||-+|. -.+....+||.||
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~------------------~snpIrmIQrrGR 514 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDY------------------SSNPIRMVQRRGR 514 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecC------------------CccHHHHHHHhcc
Confidence 4899999999999999999999999999999999999999998777 5567889999999
Q ss_pred cCCCCCcEEEEccCh
Q 007931 394 AGRVRPGKCYRLYTE 408 (584)
Q Consensus 394 aGR~~~G~~~~l~~~ 408 (584)
||.+.|+|+.|++.
T Consensus 515 -gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 515 -GRARNSKCVLLTTG 528 (746)
T ss_pred -ccccCCeEEEEEcc
Confidence 99999999999983
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.9e-32 Score=285.69 Aligned_cols=309 Identities=18% Similarity=0.189 Sum_probs=219.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeE
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYT 130 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~ 130 (584)
.-|.++++++.+++++++..|||+||| +|||.++. .|..|+|+|...|...++.. ....|+.+....+..
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~--l~~~Gi~A~~lnS~l 91 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQ--LEAAGIRAAYLNSTL 91 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHH--HHHcCceeehhhccc
Confidence 346789999999999999999999999 99998876 24679999999999998887 455555443333322
Q ss_pred eeccCc-----CCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccch-hHHHHH--HHHHHHhcCCceEEE
Q 007931 131 IRFEDF-----TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST-DILLGL--LKKIQRCRSDLRLII 201 (584)
Q Consensus 131 ~~~~~~-----~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~-d~l~~~--l~~~~~~~~~~~vi~ 201 (584)
...+.. ......+++|.+|++|...-..+.+ -.++++++|||||.-+-+. ||-..+ +..+....+++.++.
T Consensus 92 ~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~A 171 (590)
T COG0514 92 SREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLA 171 (590)
T ss_pred CHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEE
Confidence 221111 1122579999999988643221111 4578999999999655333 444333 344555667899999
Q ss_pred EecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEE
Q 007931 202 SSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILV 281 (584)
Q Consensus 202 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLV 281 (584)
+|||.+...-.+........ .+.++. .+-..| .++|...+..+...+.. .+.. ......+..+|
T Consensus 172 lTATA~~~v~~DI~~~L~l~------------~~~~~~-~sfdRp-Ni~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GII 235 (590)
T COG0514 172 LTATATPRVRDDIREQLGLQ------------DANIFR-GSFDRP-NLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGII 235 (590)
T ss_pred EeCCCChHHHHHHHHHhcCC------------CcceEE-ecCCCc-hhhhhhhhcccHHHHHH-HHHh-hccccCCCeEE
Confidence 99999765444433221100 000111 110000 12222111111111111 2221 22445667899
Q ss_pred EeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecC
Q 007931 282 FLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSG 361 (584)
Q Consensus 282 F~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g 361 (584)
||.|+..++.+++.|... ++.+.+|||||+.++|..+.+.|.++..+|+|||++.++|||.|||++||+++
T Consensus 236 Yc~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 236 YCLTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred EEeeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 999999999999999876 89999999999999999999999999999999999999999999999999999
Q ss_pred CccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHh
Q 007931 362 FSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (584)
Q Consensus 362 ~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (584)
+ |.|.++|.|-+|||||. .+..|+.||++.+..
T Consensus 307 l------------------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 307 L------------------PGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred C------------------CCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 8 99999999999999999 889999999977643
No 60
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.1e-31 Score=295.13 Aligned_cols=305 Identities=15% Similarity=0.176 Sum_probs=204.4
Q ss_pred CCCchHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHH--HHHHHHHh
Q 007931 48 RLPVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAV--ASRVAEEM 119 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~------~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~--~~~~~~~~ 119 (584)
...+...|++.+..+.++ .+.+++||||||||......++.. ...+.++++++|++.|+.|.. .+.+....
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~-~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAA-IEAGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 344667777777777654 379999999999994333222222 234567899999999988743 33444556
Q ss_pred CCcceeEEeeEeeccC-----cCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhc
Q 007931 120 GVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR 194 (584)
Q Consensus 120 ~~~vg~~vg~~~~~~~-----~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~ 194 (584)
+..++..+|.....+. .......+|+|+|++.+.. ...+.++++|||||+|..+.. ....+....
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~------qr~~l~~~~ 407 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVE------QRLALREKG 407 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHH------HHHHHHhcC
Confidence 7777777774432111 1112268999999987632 234789999999999953322 112233334
Q ss_pred CCceEEEEecccChHHHHHH-hhcCCCCCCCcccccCCCCCCeEE-EECCccccceEEecCCCcchHHHHHHHHHHHHHh
Q 007931 195 SDLRLIISSATIEAKSMSAF-FHARKGRRGLEGVELVPRLEPAIL-SVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD 272 (584)
Q Consensus 195 ~~~~vi~~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~ 272 (584)
.+.++++||||+.+..++.. ++... ...+ ..+....++...+...... +.....+....
T Consensus 408 ~~~~iL~~SATp~prtl~~~~~g~~~---------------~s~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~~- 468 (681)
T PRK10917 408 ENPHVLVMTATPIPRTLAMTAYGDLD---------------VSVIDELPPGRKPITTVVIPDSRR---DEVYERIREEI- 468 (681)
T ss_pred CCCCEEEEeCCCCHHHHHHHHcCCCc---------------eEEEecCCCCCCCcEEEEeCcccH---HHHHHHHHHHH-
Confidence 56889999999966655432 22211 0011 1122223455444433222 22333333332
Q ss_pred cCCCCCEEEEeCcHH--------HHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCC
Q 007931 273 KEPPGDILVFLTGQD--------DIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI 344 (584)
Q Consensus 273 ~~~~~~iLVF~~~~~--------~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i 344 (584)
..+++++||||..+ .++.+++.|.+.+ +++.+..+||+|++++|+++++.|++|+.+|||||++
T Consensus 469 -~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 540 (681)
T PRK10917 469 -AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF-------PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTV 540 (681)
T ss_pred -HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcc
Confidence 34678999999644 4556666666543 2478999999999999999999999999999999999
Q ss_pred CccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccC
Q 007931 345 AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (584)
Q Consensus 345 ~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (584)
+++|||+|++++||.++. . ..+.+++.||+||+||. .+|.||.+++
T Consensus 541 ie~GiDip~v~~VIi~~~--------~---------r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 541 IEVGVDVPNATVMVIENA--------E---------RFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eeeCcccCCCcEEEEeCC--------C---------CCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999998554 1 12457788999999999 7899999985
No 61
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-32 Score=264.53 Aligned_cols=335 Identities=21% Similarity=0.213 Sum_probs=250.4
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHH--HHhcCc----cCCCeEE
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAGW----ADGGRVI 98 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~--l~~~~~----~~~~~~I 98 (584)
.+|.++++.+...+++.+-..+-|.-.++..|.-++++. +++..|.|||||| |++|.+ ++.... ..+...+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgK-DvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGK-DVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCc-ceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 469999999999999999999999999988887777655 7999999999999 888854 332211 1234569
Q ss_pred EEeCchHHHHH--HHHHHHHHHhC--CcceeEE---eeEeeccCcCCCCCceEEEechHHHHHHHccCCC--CCCCcEEE
Q 007931 99 ACTQPRRLAVQ--AVASRVAEEMG--VKVGEEV---GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIM 169 (584)
Q Consensus 99 ~v~~~r~la~~--~~~~~~~~~~~--~~vg~~v---g~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iI 169 (584)
+++|+|+|+.| .+.+.+....+ .++.... ..++.. ..-.+.++|+|+||+.+++++..+.. +..++++|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~--~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LV 175 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS--VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLV 175 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH--HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEE
Confidence 99999999987 33343333332 1111111 111111 11224799999999999999988874 88999999
Q ss_pred EeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccc--
Q 007931 170 VDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF-- 245 (584)
Q Consensus 170 iDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 245 (584)
+|||+ ..+..++-..+.+.....++..|-++||||+ |+..+.+.|...|+ ++.+....-
T Consensus 176 vDEAD-LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPv----------------iLkl~e~el~~ 238 (569)
T KOG0346|consen 176 VDEAD-LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPV----------------ILKLTEGELPN 238 (569)
T ss_pred echhh-hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCe----------------EEEeccccCCC
Confidence 99999 4455555556656566678889999999999 78889898887763 333333222
Q ss_pred --cceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHH
Q 007931 246 --NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAE 323 (584)
Q Consensus 246 --~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 323 (584)
.+..++......|.. ..+-.++++ .--.|++|||+++.+.+.++.-.|... ++....++|.||...
T Consensus 239 ~dqL~Qy~v~cse~DKf-lllyallKL--~LI~gKsliFVNtIdr~YrLkLfLeqF---------GiksciLNseLP~NS 306 (569)
T KOG0346|consen 239 PDQLTQYQVKCSEEDKF-LLLYALLKL--RLIRGKSLIFVNTIDRCYRLKLFLEQF---------GIKSCILNSELPANS 306 (569)
T ss_pred cccceEEEEEeccchhH-HHHHHHHHH--HHhcCceEEEEechhhhHHHHHHHHHh---------CcHhhhhcccccccc
Confidence 233444444333321 122222222 234788999999999999998888776 888999999999999
Q ss_pred HhcccCCCCCCCcEEEEeCCC-----------------------------------CccccccCCeEEEEecCCccceee
Q 007931 324 QEQVFSPTPRGKRKVVISTNI-----------------------------------AETSLTLEGIVYVVDSGFSKQRFY 368 (584)
Q Consensus 324 r~~i~~~~~~g~~~vlvaT~i-----------------------------------~e~Gidip~v~~VId~g~~k~~~~ 368 (584)
|..|++.|..|..+|||||+. +.+|||+..|..|+++++
T Consensus 307 R~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~------ 380 (569)
T KOG0346|consen 307 RCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF------ 380 (569)
T ss_pred hhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC------
Confidence 999999999999999999992 248999999999999999
Q ss_pred cCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHH
Q 007931 369 NPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (584)
Q Consensus 369 d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (584)
|.+..+|+||+||++|. .+|.+..++.+...
T Consensus 381 ------------P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 381 ------------PETVTSYIHRVGRTARGNNKGTALSFVSPKEE 412 (569)
T ss_pred ------------CCchHHHHHhccccccCCCCCceEEEecchHH
Confidence 99999999999999999 89999988876544
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.9e-31 Score=292.24 Aligned_cols=305 Identities=14% Similarity=0.136 Sum_probs=197.8
Q ss_pred chHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHH--HHHHHHHhCCc
Q 007931 51 VYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAV--ASRVAEEMGVK 122 (584)
Q Consensus 51 ~~~~~~~il~~l~~~------~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~--~~~~~~~~~~~ 122 (584)
+...|++++..+..+ .+.+++||||||||..+...++.. ...+.++++++|++.|+.|.. .+.+....|..
T Consensus 236 lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~-~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~ 314 (630)
T TIGR00643 236 LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAA-IEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIE 314 (630)
T ss_pred CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcE
Confidence 556666666666543 258999999999995443322222 234567899999999888733 33344445677
Q ss_pred ceeEEeeEeeccC-----cCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCc
Q 007931 123 VGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL 197 (584)
Q Consensus 123 vg~~vg~~~~~~~-----~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~ 197 (584)
++..+|.....+. .......+|+|+|++.+.. +..+.++++|||||+|..+... ...+........+.
T Consensus 315 v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~q---r~~l~~~~~~~~~~ 387 (630)
T TIGR00643 315 VALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQ---RKKLREKGQGGFTP 387 (630)
T ss_pred EEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHHH---HHHHHHhcccCCCC
Confidence 7777774322111 1112257999999987643 3347899999999999543321 11111111111267
Q ss_pred eEEEEecccChHHHHHHh-hcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCC
Q 007931 198 RLIISSATIEAKSMSAFF-HARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPP 276 (584)
Q Consensus 198 ~vi~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 276 (584)
++++||||+.+..++... +.... .. +-..+....++...+...... +.....+.... ..+
T Consensus 388 ~~l~~SATp~prtl~l~~~~~l~~-~~-------------i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l--~~g 448 (630)
T TIGR00643 388 HVLVMSATPIPRTLALTVYGDLDT-SI-------------IDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI--AKG 448 (630)
T ss_pred CEEEEeCCCCcHHHHHHhcCCcce-ee-------------eccCCCCCCceEEEEeCcchH---HHHHHHHHHHH--HhC
Confidence 899999998665554322 21110 00 111122223444444332211 22233222221 245
Q ss_pred CCEEEEeCcHH--------HHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccc
Q 007931 277 GDILVFLTGQD--------DIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETS 348 (584)
Q Consensus 277 ~~iLVF~~~~~--------~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~G 348 (584)
++++||||..+ .++.+++.|.+.+ +++.+..+||+|++++|.++++.|++|+.+|||||+++++|
T Consensus 449 ~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 521 (630)
T TIGR00643 449 RQAYVVYPLIEESEKLDLKAAEALYERLKKAF-------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521 (630)
T ss_pred CcEEEEEccccccccchHHHHHHHHHHHHhhC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecC
Confidence 78999999764 4556666665542 47889999999999999999999999999999999999999
Q ss_pred cccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEcc
Q 007931 349 LTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (584)
Q Consensus 349 idip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~ 406 (584)
||+|++++||..+. . ..+.+++.||+||+||. .+|.||.++
T Consensus 522 vDiP~v~~VIi~~~--------~---------r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 522 VDVPNATVMVIEDA--------E---------RFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred cccCCCcEEEEeCC--------C---------cCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999999997544 1 12467889999999998 789999998
No 63
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.6e-31 Score=306.03 Aligned_cols=303 Identities=17% Similarity=0.158 Sum_probs=197.9
Q ss_pred chHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHH--HHHHhCCc
Q 007931 51 VYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR--VAEEMGVK 122 (584)
Q Consensus 51 ~~~~~~~il~~l~~~------~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~--~~~~~~~~ 122 (584)
....|.+.+..+..+ .+++++|+||||||.++-..+... ...+.++++++|++.|+.|..... .....+..
T Consensus 601 ~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~ 679 (1147)
T PRK10689 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 (1147)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCce
Confidence 445555555655554 689999999999994432222211 234667899999999988744332 12223445
Q ss_pred ceeEEeeEeeccCcC-----CCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCc
Q 007931 123 VGEEVGYTIRFEDFT-----NKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL 197 (584)
Q Consensus 123 vg~~vg~~~~~~~~~-----~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~ 197 (584)
++...|+....+... .....+|+|+||+.+ ..+..+.++++|||||+|..+.. ....+...+.+.
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrfG~~------~~e~lk~l~~~~ 749 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRFGVR------HKERIKAMRADV 749 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhcchh------HHHHHHhcCCCC
Confidence 555555332211111 112579999999744 23334789999999999954321 123344456789
Q ss_pred eEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC-ccccceEEecCCCcchHHHHHHHHHHHHHhcCCC
Q 007931 198 RLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPP 276 (584)
Q Consensus 198 ~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 276 (584)
++++||||+....+........ .+..+..+. ...+++.+........ ....+..-. ..+
T Consensus 750 qvLl~SATpiprtl~l~~~gl~--------------d~~~I~~~p~~r~~v~~~~~~~~~~~----~k~~il~el--~r~ 809 (1147)
T PRK10689 750 DILTLTATPIPRTLNMAMSGMR--------------DLSIIATPPARRLAVKTFVREYDSLV----VREAILREI--LRG 809 (1147)
T ss_pred cEEEEcCCCCHHHHHHHHhhCC--------------CcEEEecCCCCCCCceEEEEecCcHH----HHHHHHHHH--hcC
Confidence 9999999986554432221111 011232222 1233443332211111 111111111 236
Q ss_pred CCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEE
Q 007931 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVY 356 (584)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~ 356 (584)
|+++|||++++.++.+++.|.+.+ ++..+..+||+|++++|.+++..|++|+.+|||||+++++|||+|++++
T Consensus 810 gqv~vf~n~i~~ie~la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~ 882 (1147)
T PRK10689 810 GQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 (1147)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCE
Confidence 789999999999999999998764 3678999999999999999999999999999999999999999999999
Q ss_pred EEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccCh
Q 007931 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (584)
Q Consensus 357 VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (584)
||.... . ..+.++|.||+||+||. ..|.||.++..
T Consensus 883 VIi~~a--------d---------~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 883 IIIERA--------D---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEEecC--------C---------CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 993211 0 12346799999999999 88999998853
No 64
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=5.6e-32 Score=262.18 Aligned_cols=343 Identities=20% Similarity=0.228 Sum_probs=261.2
Q ss_pred ccccccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEE
Q 007931 22 VVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIA 99 (584)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~ 99 (584)
-+....||++.++..+....+......-|...+|.+|+..+. +.++++++.+|+||| +.++.+..-+.-.....+++
T Consensus 21 ~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~-G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qali 99 (397)
T KOG0327|consen 21 WNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIK-GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALI 99 (397)
T ss_pred HHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhcccccccc-CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHH
Confidence 344556799999999999999999999999999999888775 466999999999999 44443333222223345688
Q ss_pred EeCchHHHHHHH--HHHHHHHhCCcceeEEeeEeec-cC-cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCC
Q 007931 100 CTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRF-ED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH 174 (584)
Q Consensus 100 v~~~r~la~~~~--~~~~~~~~~~~vg~~vg~~~~~-~~-~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~H 174 (584)
++|+|+|+.+.. ...+...++..+...+|..... +. .......+|+++|||.++..+....+ ...+.++|+||++
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 999999998844 4445556666666666643332 22 22333689999999999999877665 6679999999999
Q ss_pred cCccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc-ccceEEe
Q 007931 175 ERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-FNVQIHY 251 (584)
Q Consensus 175 er~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 251 (584)
| .+..++...+.......+++.|++++|||. +...+.+-|...+...... -++.+ .-++.+|
T Consensus 180 E-mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vk--------------k~~ltl~gikq~~ 244 (397)
T KOG0327|consen 180 E-MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVK--------------KDELTLEGIKQFY 244 (397)
T ss_pred h-hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEec--------------chhhhhhheeeee
Confidence 6 455567777777777789999999999999 4455666666655321111 11111 1122333
Q ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCC
Q 007931 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (584)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~ 331 (584)
......+ ....+..++. .-.+.+|||+|++.+..+...|..+ +..+...|+.|.+.+|..+...|
T Consensus 245 i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef 309 (397)
T KOG0327|consen 245 INVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMREF 309 (397)
T ss_pred eeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHHHh
Confidence 3322222 4445555555 4567899999999999999999655 89999999999999999999999
Q ss_pred CCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHH
Q 007931 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (584)
Q Consensus 332 ~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (584)
+.|..+|||+|+.+++|+|+-++..||++.+ |..+.+|.||+||+||. .+|..+.++++++
T Consensus 310 ~~gssrvlIttdl~argidv~~~slvinydl------------------P~~~~~yihR~gr~gr~grkg~~in~v~~~d 371 (397)
T KOG0327|consen 310 RSGSSRVLITTDLLARGIDVQQVSLVVNYDL------------------PARKENYIHRIGRAGRFGRKGVAINFVTEED 371 (397)
T ss_pred hcCCceEEeeccccccccchhhcceeeeecc------------------ccchhhhhhhcccccccCCCceeeeeehHhh
Confidence 9999999999999999999999999999888 88899999999999999 8999999999876
Q ss_pred Hhh
Q 007931 411 FVK 413 (584)
Q Consensus 411 ~~~ 413 (584)
...
T Consensus 372 ~~~ 374 (397)
T KOG0327|consen 372 VRD 374 (397)
T ss_pred HHH
Confidence 654
No 65
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.1e-31 Score=266.61 Aligned_cols=319 Identities=18% Similarity=0.219 Sum_probs=215.0
Q ss_pred CCchHHHHHHHHHH----h-----cCCEEEEEcCCCChHH--HHHHHHHHhc-CccCCCeEEEEeCchHHHHH--HHHHH
Q 007931 49 LPVYKYRTAILYLV----E-----THATTIIVGETGSGKT--TQIPQYLKEA-GWADGGRVIACTQPRRLAVQ--AVASR 114 (584)
Q Consensus 49 lP~~~~~~~il~~l----~-----~~~~viv~a~TGsGKT--~~ip~~l~~~-~~~~~~~~I~v~~~r~la~~--~~~~~ 114 (584)
--.++.|..++.++ . ..+++.|.|||||||| |.||..-.-. ..-+.-++|+++|++.|+.| ...++
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 34555666666666 2 2467999999999999 8888653322 21233568999999999987 44555
Q ss_pred HHHHhCCcceeEEeeE-eeccCc-----CCCCCceEEEechHHHHHHHccCCC--CCCCcEEEEeCCCcCccchhH---H
Q 007931 115 VAEEMGVKVGEEVGYT-IRFEDF-----TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDI---L 183 (584)
Q Consensus 115 ~~~~~~~~vg~~vg~~-~~~~~~-----~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~---l 183 (584)
+....|..|+...|-. .+.+.. ......+|+|+|||+|.+++.+.+. |+++.++|||||+ |.++..+ +
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl 316 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWL 316 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHH
Confidence 5566666666666622 221111 1112459999999999999986543 9999999999999 5544322 1
Q ss_pred HHHH---H---------HHHH-------------------hcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccC
Q 007931 184 LGLL---K---------KIQR-------------------CRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELV 230 (584)
Q Consensus 184 ~~~l---~---------~~~~-------------------~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~ 230 (584)
..++ + .+.+ ..+++..+.+|||+ ++..+.++--..|.
T Consensus 317 ~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Pr---------- 386 (620)
T KOG0350|consen 317 DTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPR---------- 386 (620)
T ss_pred HHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCc----------
Confidence 1111 1 0111 12334466777877 66666665433331
Q ss_pred CCCCCeEEEECC---ccccc--e--EEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhc
Q 007931 231 PRLEPAILSVEG---RGFNV--Q--IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS 303 (584)
Q Consensus 231 ~~~~~~~~~~~~---~~~~v--~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~ 303 (584)
.+.+.+ ..|.+ . ..+..... . .....+..........++|+|+++...+.+++..|.-.+
T Consensus 387 ------l~~v~~~~~~ryslp~~l~~~~vv~~~-~---~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~--- 453 (620)
T KOG0350|consen 387 ------LFHVSKPLIGRYSLPSSLSHRLVVTEP-K---FKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEF--- 453 (620)
T ss_pred ------eEEeecccceeeecChhhhhceeeccc-c---cchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHh---
Confidence 222221 11110 0 00000000 0 001122233334456779999999999999999998443
Q ss_pred cCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeecc
Q 007931 304 KKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIS 383 (584)
Q Consensus 304 ~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s 383 (584)
+..+..+-.+.|+++...|.+.++.|..|.++|||||+++++|+|+.+|+.||+|+. |.+
T Consensus 454 --~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~------------------P~~ 513 (620)
T KOG0350|consen 454 --CSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP------------------PAS 513 (620)
T ss_pred --ccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC------------------Cch
Confidence 334667777999999999999999999999999999999999999999999999777 889
Q ss_pred HHhHHHhccccCCC-CCcEEEEccChHHH
Q 007931 384 KASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (584)
Q Consensus 384 ~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (584)
..+|+||+||++|+ +.|.||.|.+.+..
T Consensus 514 ~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 514 DKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred hhHHHHhhcccccccCCceEEEeeccccc
Confidence 99999999999999 89999999987644
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=2.4e-30 Score=268.65 Aligned_cols=299 Identities=19% Similarity=0.195 Sum_probs=186.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCc-cCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEe------e-----cc
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTI------R-----FE 134 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~~~-~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~------~-----~~ 134 (584)
+++|+||||||||.....+++.... ....++++++|.+.++. +..+++...++..++...|... . .+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~-q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATIN-AMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHH-HHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHH
Confidence 4799999999999776666554321 23457788888777765 5666667766655554444211 0 00
Q ss_pred Cc-----CC---CCCceEEEechHHHHHHHccCCC-------CCCCcEEEEeCCCcCccc-hhHHHHHHHHHHHhcCCce
Q 007931 135 DF-----TN---KDLTAIKFLTDGVLLREMMDDPL-------LTKYSVIMVDEAHERSIS-TDILLGLLKKIQRCRSDLR 198 (584)
Q Consensus 135 ~~-----~~---~~~~~I~~~T~~~ll~~l~~~~~-------l~~~~~iIiDE~Her~~~-~d~l~~~l~~~~~~~~~~~ 198 (584)
.. .. ....+|+++||+.++..+..... .-..++||+||+|..... .+.+..+++.+. ..+.|
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~ 157 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVP 157 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCC
Confidence 00 00 01467999999999887765210 123489999999954422 234444444443 35789
Q ss_pred EEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCC
Q 007931 199 LIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (584)
Q Consensus 199 vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 278 (584)
+++||||++ +.+.+++............+.. ... ....++.... ......... ....+... ...+++
T Consensus 158 ~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~--~~~~~~~~~-~l~~l~~~--~~~~~~ 224 (358)
T TIGR01587 158 ILLMSATLP-KFLKEYAEKIGYVEFNEPLDLK------EER-RFERHRFIKI--ESDKVGEIS-SLERLLEF--IKKGGK 224 (358)
T ss_pred EEEEecCch-HHHHHHHhcCCCcccccCCCCc------ccc-ccccccceee--ccccccCHH-HHHHHHHH--hhCCCe
Confidence 999999996 4566666543211000000000 000 0000111000 110001111 11222221 134678
Q ss_pred EEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcc----cCCCCCCCcEEEEeCCCCccccccCCe
Q 007931 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV----FSPTPRGKRKVVISTNIAETSLTLEGI 354 (584)
Q Consensus 279 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i----~~~~~~g~~~vlvaT~i~e~Gidip~v 354 (584)
+||||+++++++.+++.|.+.. +...+..+||++++.+|.++ ++.|++|..+|||||+++++|+||| +
T Consensus 225 ~lVf~~t~~~~~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~ 296 (358)
T TIGR01587 225 IAIIVNTVDRAQEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-A 296 (358)
T ss_pred EEEEECCHHHHHHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-C
Confidence 9999999999999999998763 23479999999999999764 8889999999999999999999997 6
Q ss_pred EEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC--CC---cEEEEccChH
Q 007931 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV--RP---GKCYRLYTEE 409 (584)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~--~~---G~~~~l~~~~ 409 (584)
++||.. +.+..+|+||+||+||. .. |.+|.+....
T Consensus 297 ~~vi~~--------------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 297 DVMITE--------------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred CEEEEc--------------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 677753 34568899999999997 22 3677766544
No 67
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5.1e-30 Score=277.08 Aligned_cols=441 Identities=16% Similarity=0.163 Sum_probs=280.1
Q ss_pred HHHHHHHHH-HhcCCEEEEEcCCCChHHHHHHHHHHhcC---cc-------CCCeEEEEeCchHHHHHHHH--HHHHHHh
Q 007931 53 KYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAG---WA-------DGGRVIACTQPRRLAVQAVA--SRVAEEM 119 (584)
Q Consensus 53 ~~~~~il~~-l~~~~~viv~a~TGsGKT~~ip~~l~~~~---~~-------~~~~~I~v~~~r~la~~~~~--~~~~~~~ 119 (584)
..|..+..+ +....++++|||||+|||-.+-.-+++.. .. ...+++|++|.++|+++.+- .+-...+
T Consensus 312 rIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~ 391 (1674)
T KOG0951|consen 312 RIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPL 391 (1674)
T ss_pred HHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcccc
Confidence 344455443 45567999999999999944333333221 11 12367999999999987554 2223457
Q ss_pred CCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCC---CCCCCcEEEEeCCC----cCccchhHHHHHHHHHH-
Q 007931 120 GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAH----ERSISTDILLGLLKKIQ- 191 (584)
Q Consensus 120 ~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~---~l~~~~~iIiDE~H----er~~~~d~l~~~l~~~~- 191 (584)
|+.|+..+|....... ....++|+++||+..--.-.++. ..+-++++||||+| .|+. .+..+..+..
T Consensus 392 GI~V~ElTgD~~l~~~--qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGp---vLESIVaRt~r 466 (1674)
T KOG0951|consen 392 GITVLELTGDSQLGKE--QIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGP---VLESIVARTFR 466 (1674)
T ss_pred CcEEEEecccccchhh--hhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccch---HHHHHHHHHHH
Confidence 8888888885433221 22369999999998743333322 25678999999998 4554 3444433332
Q ss_pred ---HhcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEE--CCccccceEEecCCCcchHHHH---
Q 007931 192 ---RCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV--EGRGFNVQIHYVEEPVSDYVQA--- 262 (584)
Q Consensus 192 ---~~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~--- 262 (584)
....+.|++++|||+ |.++++.|+...+.. .+.. .-|+.|.+..|......+-...
T Consensus 467 ~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~g---------------lf~fd~syRpvPL~qq~Igi~ek~~~~~~qa 531 (1674)
T KOG0951|consen 467 RSESTEEGSRLVGLSATLPNYEDVASFLRVDPEG---------------LFYFDSSYRPVPLKQQYIGITEKKPLKRFQA 531 (1674)
T ss_pred HhhhcccCceeeeecccCCchhhhHHHhccCccc---------------ccccCcccCcCCccceEeccccCCchHHHHH
Confidence 345689999999999 889999988765511 2222 3345566666654433322211
Q ss_pred HH-HHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhh----------c------------------cCCCCCeEEE
Q 007931 263 AV-STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART----------S------------------KKNSSGLIIL 313 (584)
Q Consensus 263 ~~-~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~----------~------------------~~~~~~~~v~ 313 (584)
.- ..+.++......+++|||+.++++..+.|+.+++.+-. - ..+..++.++
T Consensus 532 mNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfa 611 (1674)
T KOG0951|consen 532 MNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFA 611 (1674)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccce
Confidence 11 11223334445589999999999999999999843221 0 1123467799
Q ss_pred EecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccc
Q 007931 314 PLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGR 393 (584)
Q Consensus 314 ~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GR 393 (584)
.||+||+..+|..+++.|+.|.++|+|+|.++++|||+|+-+++| ....+|||..|... +.|+.+..||.||
T Consensus 612 IHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtVii----kgtqvy~pekg~w~----elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 612 IHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVII----KGTQVYDPEKGRWT----ELSPLDVMQMLGR 683 (1674)
T ss_pred eeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEe----cCccccCcccCccc----cCCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998888 35678999988654 7899999999999
Q ss_pred cCCC---C--CcEEEEccChHHHhh-hCCC-CCCCcccccchhHHHHHHHhcCCCCccCC-CC----------C------
Q 007931 394 AGRV---R--PGKCYRLYTEEYFVK-EIPA-EGIPEMQRSNLVSCVIQLKALGIDNILGF-DW----------P------ 449 (584)
Q Consensus 394 aGR~---~--~G~~~~l~~~~~~~~-~~~~-~~~pei~r~~l~~~~L~l~~~~~~~~~~~-~~----------~------ 449 (584)
|||. + .|+.+.=+++-.|.- .|.+ .++++-.-..|.+.+-.-+.+|+.+.... +| +
T Consensus 684 agrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly 763 (1674)
T KOG0951|consen 684 AGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLY 763 (1674)
T ss_pred cCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhc
Confidence 9998 2 333333333333322 1222 23333333334443334444443222110 00 1
Q ss_pred -------CCCC----HHHHHHHHHHHHHcCCccCC-----CCCCHHHHHHhccCCCChhhhHHHHhhcccCChHHHHHHH
Q 007931 450 -------ASPP----PEAMIRALEVLYSLGVLDDD-----AKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITIS 513 (584)
Q Consensus 450 -------~~p~----~~~~~~al~~L~~~g~i~~~-----~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i~ 513 (584)
|++. .+.+.+|...|...|.|--+ -+.|+ +|++.+.+++.-......-....-.|.+. .+.
T Consensus 764 ~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~te-lg~ias~yyi~~~s~~~yn~~L~~~~~~i--~lf 840 (1674)
T KOG0951|consen 764 GVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATE-LGRIASSYYITHGSMATYNELLKETMSEI--DLF 840 (1674)
T ss_pred cCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchh-hccccceeeeecchHHHHHhhhhhhhccc--hhh
Confidence 1111 14467788889999988522 26785 99999999997665555544444444433 334
Q ss_pred HhhccCccccc
Q 007931 514 AVLSIQSIWVS 524 (584)
Q Consensus 514 a~l~~~~~f~~ 524 (584)
.+.+..+-|..
T Consensus 841 rifs~seEfk~ 851 (1674)
T KOG0951|consen 841 RIFSKSEEFKY 851 (1674)
T ss_pred hhhhhcccccc
Confidence 44554444443
No 68
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=7.1e-32 Score=259.67 Aligned_cols=347 Identities=19% Similarity=0.231 Sum_probs=242.2
Q ss_pred cCCCccccccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH--hcCc--
Q 007931 18 EEGGVVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAGW-- 91 (584)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~--~~~~-- 91 (584)
.+..+- +-.||.+..+.......|.+...--|...+-+- +..+..+++.|-.|-|||||| +.+|.+++ +...
T Consensus 162 Gd~ipP-PIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQG-lPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 162 GDDIPP-PIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQG-LPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred CCCCCC-chhhhhhccCCHHHHHHHHhcCCCCCCceeecC-cceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 444444 345799999999999888876655565544333 445567888999999999999 77776554 2211
Q ss_pred ----cCCCeEEEEeCchHHHHH--HHHHHHHHHh---C---CcceeEEe-eEeeccCcCCCCCceEEEechHHHHHHHcc
Q 007931 92 ----ADGGRVIACTQPRRLAVQ--AVASRVAEEM---G---VKVGEEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMD 158 (584)
Q Consensus 92 ----~~~~~~I~v~~~r~la~~--~~~~~~~~~~---~---~~vg~~vg-~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~ 158 (584)
..+.--++++|.|+||.| .+...+...+ | .+.+..+| ..++..-....+..+|+++|||+|.+.+..
T Consensus 240 Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K 319 (610)
T KOG0341|consen 240 PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK 319 (610)
T ss_pred ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH
Confidence 123334889999999988 3333333322 2 12222333 333322223334789999999999999876
Q ss_pred CCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeE
Q 007931 159 DPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAI 237 (584)
Q Consensus 159 ~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (584)
... |.-..++.+|||+ |.++.+|-..+-..+.......|.+++|||++.. ++.|-....++ |..
T Consensus 320 K~~sLd~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~K-IQ~FAkSALVK-------------Pvt 384 (610)
T KOG0341|consen 320 KIMSLDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKK-IQNFAKSALVK-------------PVT 384 (610)
T ss_pred hhccHHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHH-HHHHHHhhccc-------------ceE
Confidence 655 8888999999999 8999988777666665566778999999999543 33333222211 112
Q ss_pred EEECCccccceEEecCCCcchHHHHHHHHHHH-HHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEec
Q 007931 238 LSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLL-IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY 316 (584)
Q Consensus 238 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh 316 (584)
+.+ ||.-.-.... ...-+|+.+-...+.- -+......++||||..+.++..+.++|--. ++.+..+|
T Consensus 385 vNV-GRAGAAsldV--iQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlK---------GVEavaIH 452 (610)
T KOG0341|consen 385 VNV-GRAGAASLDV--IQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLK---------GVEAVAIH 452 (610)
T ss_pred Eec-ccccccchhH--HHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHc---------cceeEEee
Confidence 222 2211000000 0011233322222211 123345567999999999999999998554 89999999
Q ss_pred CCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCC
Q 007931 317 SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGR 396 (584)
Q Consensus 317 ~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR 396 (584)
||-.+++|...++.|+.|+-+|+|||++|..|+|+|+|.+||++++ |-...+|+||+||+||
T Consensus 453 GGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM------------------P~eIENYVHRIGRTGR 514 (610)
T KOG0341|consen 453 GGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM------------------PEEIENYVHRIGRTGR 514 (610)
T ss_pred cCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCC------------------hHHHHHHHHHhcccCC
Confidence 9999999999999999999999999999999999999999999988 8899999999999999
Q ss_pred C-CCcEEEEccChHHH
Q 007931 397 V-RPGKCYRLYTEEYF 411 (584)
Q Consensus 397 ~-~~G~~~~l~~~~~~ 411 (584)
. +.|.+-.++.+..-
T Consensus 515 sg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 515 SGKTGIATTFINKNQE 530 (610)
T ss_pred CCCcceeeeeecccch
Confidence 9 78998888876544
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=3.9e-29 Score=257.23 Aligned_cols=291 Identities=16% Similarity=0.190 Sum_probs=179.0
Q ss_pred HHHHHHHHHhcCC--EEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHH--HHHHh----CCccee
Q 007931 54 YRTAILYLVETHA--TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR--VAEEM----GVKVGE 125 (584)
Q Consensus 54 ~~~~il~~l~~~~--~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~--~~~~~----~~~vg~ 125 (584)
+|.+.++++.+++ ++++++|||||||...-..++. ...++++++|.++++.++..+. +...+ +..+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH 76 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 4777888887765 5899999999999443322222 2346799999999988754332 11111 233333
Q ss_pred EEeeEee----cc-------C----------cCCCCCceEEEechHHHHHHHcc---CC------CCCCCcEEEEeCCCc
Q 007931 126 EVGYTIR----FE-------D----------FTNKDLTAIKFLTDGVLLREMMD---DP------LLTKYSVIMVDEAHE 175 (584)
Q Consensus 126 ~vg~~~~----~~-------~----------~~~~~~~~I~~~T~~~ll~~l~~---~~------~l~~~~~iIiDE~He 175 (584)
..|.... .. . ......+.|+++||+++...+.. .+ .+.++++||+||+|.
T Consensus 77 ~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~ 156 (357)
T TIGR03158 77 VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccc
Confidence 3442100 00 0 00111467888889888755432 11 268899999999997
Q ss_pred Cccchh-HHH---HHHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc--------
Q 007931 176 RSISTD-ILL---GLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-------- 243 (584)
Q Consensus 176 r~~~~d-~l~---~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 243 (584)
.+.... .++ .....+.......++++||||++.. +.+++....... .++..++|+
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~-~~~~l~~~~~~~------------~~~~~v~g~~~~~~~~~ 223 (357)
T TIGR03158 157 YDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA-LILRLQNAKQAG------------VKIAPIDGEKYQFPDNP 223 (357)
T ss_pred cCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH-HHHHHHhccccC------------ceeeeecCcccccCCCh
Confidence 664332 222 2333333333457999999999754 333332210000 001222222
Q ss_pred ---------c-----ccceEEecCCC--cchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCC
Q 007931 244 ---------G-----FNVQIHYVEEP--VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNS 307 (584)
Q Consensus 244 ---------~-----~~v~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~ 307 (584)
. -+++..+.... ..+.+......+.......+++++||||+++++++.+++.|++..
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~------- 296 (357)
T TIGR03158 224 ELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG------- 296 (357)
T ss_pred hhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-------
Confidence 0 12333333211 112233333444444444466789999999999999999998641
Q ss_pred CCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhH
Q 007931 308 SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASA 387 (584)
Q Consensus 308 ~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~ 387 (584)
.++.+..+||.+++.+|.++. +.+|||||+++++|||+|++.+|++ |.+.++|
T Consensus 297 ~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~~vi~~---------------------p~~~~~y 349 (357)
T TIGR03158 297 LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRDWLIFS---------------------ARDAAAF 349 (357)
T ss_pred CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCceEEEC---------------------CCCHHHH
Confidence 146788999999999987653 6789999999999999998744332 6678999
Q ss_pred HHhccccC
Q 007931 388 RQRAGRAG 395 (584)
Q Consensus 388 ~QR~GRaG 395 (584)
+||+||+|
T Consensus 350 iqR~GR~g 357 (357)
T TIGR03158 350 WQRLGRLG 357 (357)
T ss_pred hhhcccCC
Confidence 99999998
No 70
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=6.9e-30 Score=284.96 Aligned_cols=326 Identities=21% Similarity=0.242 Sum_probs=229.0
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHH--HHHHhC--
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR--VAEEMG-- 120 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~--~~~~~~-- 120 (584)
-...+|.||.+.++.+.+++++||+.+|||||| |++|.+-.-. ..+..++|++.|+++|+..|+.+. +...++
T Consensus 67 g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l-~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 67 GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLL-RDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHh-hCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 344499999999999999999999999999999 7777653222 223457899999999998866542 334444
Q ss_pred CcceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCC-----CCCCCcEEEEeCCC-cCccchhHHHHHHHHHHH-
Q 007931 121 VKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP-----LLTKYSVIMVDEAH-ERSISTDILLGLLKKIQR- 192 (584)
Q Consensus 121 ~~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~-----~l~~~~~iIiDE~H-er~~~~d~l~~~l~~~~~- 192 (584)
...+...|.....+.. .....++|++++|.||...++... .++++++||+||+| -|+....-+..+++++..
T Consensus 146 v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~ 225 (851)
T COG1205 146 VTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRR 225 (851)
T ss_pred ceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHH
Confidence 4444555543333321 112369999999999998665432 27889999999999 567777666777777665
Q ss_pred ---hcCCceEEEEeccc-ChHHHH-HHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC---------cch
Q 007931 193 ---CRSDLRLIISSATI-EAKSMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP---------VSD 258 (584)
Q Consensus 193 ---~~~~~~vi~~SAT~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~ 258 (584)
...++++|.+|||+ ++..+. ++++..-.. .+.-++.......+....+ ..+
T Consensus 226 ~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~---------------~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s 290 (851)
T COG1205 226 LRRYGSPLQIICTSATLANPGEFAEELFGRDFEV---------------PVDEDGSPRGLRYFVRREPPIRELAESIRRS 290 (851)
T ss_pred HhccCCCceEEEEeccccChHHHHHHhcCCccee---------------eccCCCCCCCceEEEEeCCcchhhhhhcccc
Confidence 33589999999999 655554 555543311 0111222222222222222 011
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEE
Q 007931 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (584)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~v 338 (584)
........+.... ..+-++|||+.++..++.++......+...+ ......+..++|++..++|.+++..|++|+.++
T Consensus 291 ~~~~~~~~~~~~~--~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~ 367 (851)
T COG1205 291 ALAELATLAALLV--RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367 (851)
T ss_pred hHHHHHHHHHHHH--HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCCccE
Confidence 1111111111111 3456799999999999999866655544333 333467999999999999999999999999999
Q ss_pred EEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeec-cHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 339 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPI-SKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 339 lvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~-s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
+++||.+|-|+||.+++.||.+|+ |. |..+++||+|||||. +.+..+..+..+
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999998 88 899999999999999 466655555544
No 71
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=5.2e-30 Score=260.89 Aligned_cols=339 Identities=17% Similarity=0.205 Sum_probs=252.7
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc--cCCCeEEEEeC
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQ 102 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~--~~~~~~I~v~~ 102 (584)
.+..|..|-+..+....|......+|...+..+|. ++..+=++||++..|+|||.+...+.++..- ......++++|
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP-~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIP-AIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhh-hhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 34468888888888888887778899877666554 5555666999999999999332222222211 12345789999
Q ss_pred chHHHHH--HHHHHHHH-HhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCcc
Q 007931 103 PRRLAVQ--AVASRVAE-EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (584)
Q Consensus 103 ~r~la~~--~~~~~~~~-~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (584)
+|+++.| .....++. ..|..+...+|......+...-..++|+++|||++..+...+.+ ..+++++|+|||+ ..+
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~ 180 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLM 180 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhh
Confidence 9999987 44555554 45788888888554433333333799999999999998877766 8999999999999 455
Q ss_pred chhHHHHHHHH-HHHhcCCceEEEEecccCh---HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceEEe
Q 007931 179 STDILLGLLKK-IQRCRSDLRLIISSATIEA---KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHY 251 (584)
Q Consensus 179 ~~d~l~~~l~~-~~~~~~~~~vi~~SAT~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~ 251 (584)
++..+..-+.. +..+....|++.+|||.+. +.++.|+.... .+....+ .+.++.++
T Consensus 181 ~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~-----------------lVr~n~~d~~L~GikQyv 243 (980)
T KOG4284|consen 181 DTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA-----------------LVRFNADDVQLFGIKQYV 243 (980)
T ss_pred chhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc-----------------eeecccCCceeechhhee
Confidence 65544444444 4457778899999999943 34566665433 3333222 23334444
Q ss_pred cCCCcc----hHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcc
Q 007931 252 VEEPVS----DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (584)
Q Consensus 252 ~~~~~~----~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i 327 (584)
...+.. +..+...+.+-++...-+-.+.||||+....++.++..|... ++.+.++.|.|++.+|..+
T Consensus 244 ~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss---------G~d~~~ISgaM~Q~~Rl~a 314 (980)
T KOG4284|consen 244 VAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS---------GLDVTFISGAMSQKDRLLA 314 (980)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc---------CCCeEEeccccchhHHHHH
Confidence 333322 234445566667777777788999999999999999999764 8999999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEcc
Q 007931 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (584)
Q Consensus 328 ~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~ 406 (584)
++.+++-..+|||+|++.++|||-|+++.||+-+. |..-..|.||+|||||. ..|.++.++
T Consensus 315 ~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~------------------p~d~eTY~HRIGRAgRFG~~G~aVT~~ 376 (980)
T KOG4284|consen 315 VDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDA------------------PADEETYFHRIGRAGRFGAHGAAVTLL 376 (980)
T ss_pred HHHhhhceEEEEEecchhhccCCccccceEEecCC------------------CcchHHHHHHhhhcccccccceeEEEe
Confidence 99999999999999999999999999999999766 88899999999999999 789888777
Q ss_pred ChH
Q 007931 407 TEE 409 (584)
Q Consensus 407 ~~~ 409 (584)
...
T Consensus 377 ~~~ 379 (980)
T KOG4284|consen 377 EDE 379 (980)
T ss_pred ccc
Confidence 543
No 72
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.5e-30 Score=275.80 Aligned_cols=338 Identities=19% Similarity=0.246 Sum_probs=253.2
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCc-----cCCCeE
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW-----ADGGRV 97 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~-----~~~~~~ 97 (584)
+-.+|...++++.....+.+.... +....|.+.+.+|..++.+|.+|.|||||| +++|.+...... ..+.-.
T Consensus 363 pv~sW~q~gl~~~il~tlkkl~y~-k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~ 441 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKKLGYE-KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIA 441 (997)
T ss_pred ccchHhhCCchHHHHHHHHHhcCC-CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceE
Confidence 345699999999988888555555 555666677888999999999999999999 778877443321 123456
Q ss_pred EEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCC--C--CCCCcEEEE
Q 007931 98 IACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP--L--LTKYSVIMV 170 (584)
Q Consensus 98 I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~--~--l~~~~~iIi 170 (584)
|+++|+|.++.| ...+.+.+..++.+...+|..-.-+.. .....+.|+|||||+.+..+..+. . +.++.++|+
T Consensus 442 li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~ 521 (997)
T KOG0334|consen 442 LILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVL 521 (997)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeee
Confidence 999999999998 667777788888887777743322221 112369999999999998875443 2 677779999
Q ss_pred eCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccCh--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---c
Q 007931 171 DEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---F 245 (584)
Q Consensus 171 DE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 245 (584)
||++ |..+..+.....+.+...+++.|.+++|||.+. +.++.-....|+ -+.+.++. .
T Consensus 522 deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pv----------------eiiv~~~svV~k 584 (997)
T KOG0334|consen 522 DEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPV----------------EIIVGGRSVVCK 584 (997)
T ss_pred chhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCe----------------eEEEccceeEec
Confidence 9999 777888877777777778999999999999944 444443333332 12222322 1
Q ss_pred cceEEecCCC-cchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHH
Q 007931 246 NVQIHYVEEP-VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQ 324 (584)
Q Consensus 246 ~v~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 324 (584)
.|+..+.... ..+....... .+......++++|||...+.+..+.+.|.+. ++.+..+||+.++.+|
T Consensus 585 ~V~q~v~V~~~e~eKf~kL~e---Ll~e~~e~~~tiiFv~~qe~~d~l~~~L~~a---------g~~~~slHGgv~q~dR 652 (997)
T KOG0334|consen 585 EVTQVVRVCAIENEKFLKLLE---LLGERYEDGKTIIFVDKQEKADALLRDLQKA---------GYNCDSLHGGVDQHDR 652 (997)
T ss_pred cceEEEEEecCchHHHHHHHH---HHHHHhhcCCEEEEEcCchHHHHHHHHHHhc---------CcchhhhcCCCchHHH
Confidence 2233332222 2222222222 2233344889999999999999999999865 7888889999999999
Q ss_pred hcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEE
Q 007931 325 EQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (584)
Q Consensus 325 ~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~ 403 (584)
..+++.|++|..+++|||+++++|+|++++..||++++ |--.+.|.||.||+||+ +.|.||
T Consensus 653 ~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~------------------pnh~edyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 653 SSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDF------------------PNHYEDYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred HhHHHHHhccCceEEEehhhhhcccccccceEEEEccc------------------chhHHHHHHHhcccccCCccceeE
Confidence 99999999999999999999999999999999999877 55667799999999999 789999
Q ss_pred EccChHH
Q 007931 404 RLYTEEY 410 (584)
Q Consensus 404 ~l~~~~~ 410 (584)
.+.++++
T Consensus 715 tFi~p~q 721 (997)
T KOG0334|consen 715 TFITPDQ 721 (997)
T ss_pred EEeChHH
Confidence 9999843
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=1.9e-28 Score=278.67 Aligned_cols=333 Identities=18% Similarity=0.220 Sum_probs=209.7
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCC---cc
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---KV 123 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~---~v 123 (584)
..+....+|.++...+..+ ++++++|||+|||.+....+.......++++++++|++.++.|. .+.+.+.++. .+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~-~~~~~~~~~~~~~~v 89 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQH-AEFFRKFLNIPEEKI 89 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHH-HHHHHHHhCCCCceE
Confidence 3456678888888776666 69999999999996544333332223567889999999888764 4445555554 34
Q ss_pred eeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 124 g~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
....|.....+........+|+|+||+.+...+..... +.++++||+|||| +.........+.+......+..++++|
T Consensus 90 ~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~il~l 168 (773)
T PRK13766 90 VVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLVLGL 168 (773)
T ss_pred EEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEEEEE
Confidence 43444221111111112578999999999888766554 8899999999999 443333333344444455566789999
Q ss_pred eccc--ChHHHHHHhhcCCCCCCCccc----ccCCC---CCCeEEEEC--Cc------------------------cccc
Q 007931 203 SATI--EAKSMSAFFHARKGRRGLEGV----ELVPR---LEPAILSVE--GR------------------------GFNV 247 (584)
Q Consensus 203 SAT~--~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~--~~------------------------~~~v 247 (584)
|||+ +.+.+...+.+.......... ...+. .....+.++ .. ..+.
T Consensus 169 TaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~ 248 (773)
T PRK13766 169 TASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSI 248 (773)
T ss_pred EcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 9999 444444443332110000000 00000 000000000 00 0000
Q ss_pred e----------------EEecCCCc-------------------------------------------------------
Q 007931 248 Q----------------IHYVEEPV------------------------------------------------------- 256 (584)
Q Consensus 248 ~----------------~~~~~~~~------------------------------------------------------- 256 (584)
. ........
T Consensus 249 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~ 328 (773)
T PRK13766 249 SPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVE 328 (773)
T ss_pred CCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHh
Confidence 0 00000000
Q ss_pred -----------------chHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCC-
Q 007931 257 -----------------SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSG- 318 (584)
Q Consensus 257 -----------------~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~- 318 (584)
...++.....+..+....+++++||||++++.++.+++.|... ++.+..+||.
T Consensus 329 ~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~ 399 (773)
T PRK13766 329 DPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQA 399 (773)
T ss_pred CHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEccc
Confidence 0000011111112222246788999999999999999999654 5666677765
Q ss_pred -------CCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhc
Q 007931 319 -------LSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRA 391 (584)
Q Consensus 319 -------l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~ 391 (584)
+++.+|.++++.|++|..+|||||+++++|+|+|++++||.++. +.+...++||+
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~------------------~~s~~r~iQR~ 461 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP------------------VPSEIRSIQRK 461 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHh
Confidence 99999999999999999999999999999999999999998665 66888999999
Q ss_pred cccCCCCCcEEEEccChH
Q 007931 392 GRAGRVRPGKCYRLYTEE 409 (584)
Q Consensus 392 GRaGR~~~G~~~~l~~~~ 409 (584)
||+||.++|.+|.|+.+.
T Consensus 462 GR~gR~~~~~v~~l~~~~ 479 (773)
T PRK13766 462 GRTGRQEEGRVVVLIAKG 479 (773)
T ss_pred cccCcCCCCEEEEEEeCC
Confidence 999999999999999743
No 74
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=2.1e-28 Score=263.01 Aligned_cols=310 Identities=13% Similarity=0.065 Sum_probs=190.3
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCc---cee
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK---VGE 125 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~---vg~ 125 (584)
...+.+|.+.+..+..++..++++|||+|||..+..+.........+++++++|+++|+.|. .+++.+..... ++.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~-~~~l~~~~~~~~~~~~~ 191 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQM-IDDFVDYRLFPREAMHK 191 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHH-HHHHHHhccccccceeE
Confidence 56677787777666677778999999999996655433211111234789999999988764 44444433221 111
Q ss_pred EEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
..|.. .... ..+|+|+|++.+.+.. ...+.++++||+||||. ... ..+..+++. ..+..+++++|||
T Consensus 192 i~~g~-----~~~~-~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~-~~~-~~~~~il~~---~~~~~~~lGLTAT 258 (501)
T PHA02558 192 IYSGT-----AKDT-DAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHL-FTG-KSLTSIITK---LDNCKFKFGLTGS 258 (501)
T ss_pred EecCc-----ccCC-CCCEEEeeHHHHhhch--hhhccccCEEEEEchhc-ccc-hhHHHHHHh---hhccceEEEEecc
Confidence 22211 1112 5789999999987643 22478999999999994 332 222333322 2234578999999
Q ss_pred cChH-----HHHHHhhcCCCCCCCcccccCCCC-CCeEEEECCccccce------EEecCC-----CcchHHHHHHHHHH
Q 007931 206 IEAK-----SMSAFFHARKGRRGLEGVELVPRL-EPAILSVEGRGFNVQ------IHYVEE-----PVSDYVQAAVSTVL 268 (584)
Q Consensus 206 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~------~~~~~~-----~~~~~~~~~~~~i~ 268 (584)
+... .+..+|+................. .+.+..+..+..+.. ..|... ........+...+.
T Consensus 259 p~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~ 338 (501)
T PHA02558 259 LRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLAL 338 (501)
T ss_pred CCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHH
Confidence 9321 123345532211110000000000 000111100000000 000000 00000111112222
Q ss_pred HHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeC-CCCcc
Q 007931 269 LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST-NIAET 347 (584)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT-~i~e~ 347 (584)
.+. ..++++|||+.+.++++.+++.|.+. +..+..+||+++.++|.++++.|++|...||||| +++++
T Consensus 339 ~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~e 407 (501)
T PHA02558 339 KLA--KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFST 407 (501)
T ss_pred HHH--hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecc
Confidence 222 34567999999999999999999875 6789999999999999999999999999999998 89999
Q ss_pred ccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcE
Q 007931 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGK 401 (584)
Q Consensus 348 Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~ 401 (584)
|+|+|++++||.... +.|+..|+||+||+||..+|+
T Consensus 408 G~Dip~ld~vIl~~p------------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 408 GISIKNLHHVIFAHP------------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ccccccccEEEEecC------------------CcchhhhhhhhhccccCCCCC
Confidence 999999999996544 567889999999999996653
No 75
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.9e-29 Score=255.39 Aligned_cols=326 Identities=18% Similarity=0.229 Sum_probs=224.7
Q ss_pred ccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCcc-----CCCeEEEEeCchHHHH
Q 007931 36 GYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWA-----DGGRVIACTQPRRLAV 108 (584)
Q Consensus 36 ~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~-----~~~~~I~v~~~r~la~ 108 (584)
......+.+....-|...++. .+..+..+++++.||||||||| +.+|.+..-.... .+-+.+++.|+|.|++
T Consensus 145 ~~ll~nl~~~~F~~Pt~iq~~-aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~ 223 (593)
T KOG0344|consen 145 KRLLENLQELGFDEPTPIQKQ-AIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAA 223 (593)
T ss_pred HHHHHhHhhCCCCCCCcccch-hhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHH
Confidence 333445555556677777764 4566667888999999999999 7888554322221 2235689999999999
Q ss_pred HHHHHHHHHHhCCcce---eEEe--eE---eeccCcCCCCCceEEEechHHHHHHHccCC---CCCCCcEEEEeCCCcCc
Q 007931 109 QAVASRVAEEMGVKVG---EEVG--YT---IRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERS 177 (584)
Q Consensus 109 ~~~~~~~~~~~~~~vg---~~vg--~~---~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~---~l~~~~~iIiDE~Her~ 177 (584)
|-..+. .++..+-| ...+ |. .......+....+|++.||-.+...+...+ .+.++.++|+||++ +.
T Consensus 224 Qi~re~--~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~l 300 (593)
T KOG0344|consen 224 QIYREM--RKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LL 300 (593)
T ss_pred HHHHHH--HhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hh
Confidence 855442 22221111 1111 11 111111122368999999999999887765 49999999999999 44
Q ss_pred cchhHHHHHHHHHHH--hcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccc---cc--e
Q 007931 178 ISTDILLGLLKKIQR--CRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NV--Q 248 (584)
Q Consensus 178 ~~~d~l~~~l~~~~~--~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v--~ 248 (584)
..-..+...+..+.. ..+++++=++|||. .+++++........ .+.+..+.- .| +
T Consensus 301 fe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~----------------~vivg~~~sa~~~V~Qe 364 (593)
T KOG0344|consen 301 FEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLK----------------RVIVGLRNSANETVDQE 364 (593)
T ss_pred hChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccce----------------eEEEecchhHhhhhhhh
Confidence 433344444444333 45788899999998 44555554433321 111111110 11 1
Q ss_pred EEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhccc
Q 007931 249 IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVF 328 (584)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 328 (584)
..|-... .-..-.+..+....-..++|||+.+.+.+.++...|.. .+++.|.++||..++.+|.+.+
T Consensus 365 lvF~gse-----~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~--------~~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 365 LVFCGSE-----KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI--------YDNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred heeeecc-----hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh--------ccCcceeeEecccchhHHHHHH
Confidence 1111111 11223334444555667899999999999999998852 2489999999999999999999
Q ss_pred CCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccC
Q 007931 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (584)
Q Consensus 329 ~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (584)
+.|+.|++.|++||+++++|+|+-+|+.||++++ |.|..+|+||+||+||. +.|++|.+|+
T Consensus 432 ~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~------------------p~s~~syihrIGRtgRag~~g~Aitfyt 493 (593)
T KOG0344|consen 432 ERFRIGKIWVLICTDLLARGIDFKGVNLVINYDF------------------PQSDLSYIHRIGRTGRAGRSGKAITFYT 493 (593)
T ss_pred HHHhccCeeEEEehhhhhccccccCcceEEecCC------------------CchhHHHHHHhhccCCCCCCcceEEEec
Confidence 9999999999999999999999999999999888 88999999999999999 8899999999
Q ss_pred hHHHh
Q 007931 408 EEYFV 412 (584)
Q Consensus 408 ~~~~~ 412 (584)
+++..
T Consensus 494 d~d~~ 498 (593)
T KOG0344|consen 494 DQDMP 498 (593)
T ss_pred cccch
Confidence 96543
No 76
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6.2e-29 Score=242.30 Aligned_cols=338 Identities=22% Similarity=0.240 Sum_probs=252.8
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCc-cCCCeEEEEeC
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW-ADGGRVIACTQ 102 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~-~~~~~~I~v~~ 102 (584)
+.+|..++++-..+.++.+.....|...+|+-|. .+.+++.++-.|-|||||| +++|.+..-... ..+.+.++++|
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTip-liLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIP-LILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhccccc-ceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccC
Confidence 5789999999999999999999999988888764 5556777999999999999 888876543322 23457799999
Q ss_pred chHHHHH--HHHHHHHHHhCCcceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCcc
Q 007931 103 PRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (584)
Q Consensus 103 ~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (584)
+|+|+.| .+.+.+++..+......+|+....+.. ....+++|+++|||+++.......+ |+.+.+||+||++ |..
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlf 177 (529)
T KOG0337|consen 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLF 177 (529)
T ss_pred cHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHH
Confidence 9999998 556666666666666666643322221 2223689999999999876655444 8999999999999 788
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEE--CCccc-cceEEecCCC
Q 007931 179 STDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV--EGRGF-NVQIHYVEEP 255 (584)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~v~~~~~~~~ 255 (584)
..++...+-+.+.+...+.|.++||||++-. +.+|-..... .|..+.+ +.+.. ..+..|....
T Consensus 178 emgfqeql~e~l~rl~~~~QTllfSatlp~~-lv~fakaGl~-------------~p~lVRldvetkise~lk~~f~~~~ 243 (529)
T KOG0337|consen 178 EMGFQEQLHEILSRLPESRQTLLFSATLPRD-LVDFAKAGLV-------------PPVLVRLDVETKISELLKVRFFRVR 243 (529)
T ss_pred hhhhHHHHHHHHHhCCCcceEEEEeccCchh-hHHHHHccCC-------------CCceEEeehhhhcchhhhhheeeec
Confidence 8888888888888888889999999999543 3333222221 1112222 22111 1222222222
Q ss_pred cchHHHHHHHHHHHHHhc-CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC
Q 007931 256 VSDYVQAAVSTVLLIHDK-EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (584)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~-~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g 334 (584)
..+ ....++.+... ..+.+++||+++..+++-+...|... ++.+..++|.|.++-|+.-+..|+.+
T Consensus 244 ~a~----K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~---------g~~~s~iysslD~~aRk~~~~~F~~~ 310 (529)
T KOG0337|consen 244 KAE----KEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF---------GGEGSDIYSSLDQEARKINGRDFRGR 310 (529)
T ss_pred cHH----HHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc---------CCCccccccccChHhhhhccccccCC
Confidence 222 22233333322 22457999999999999999998876 88889999999999999999999999
Q ss_pred CcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHH
Q 007931 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (584)
Q Consensus 335 ~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (584)
+..++|.|+++++|+|||..+-||++++ |.+..-|.||.||+.|. +.|..|.++..++
T Consensus 311 k~~~lvvTdvaaRG~diplldnvinyd~------------------p~~~klFvhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 311 KTSILVVTDVAARGLDIPLLDNVINYDF------------------PPDDKLFVHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred ccceEEEehhhhccCCCccccccccccC------------------CCCCceEEEEecchhhccccceEEEEEeccc
Confidence 9999999999999999999999999888 66667777999999998 6899999987654
No 77
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=252.75 Aligned_cols=325 Identities=18% Similarity=0.160 Sum_probs=228.6
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeE
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~ 126 (584)
..+-+..+|++.+..++.+..|+|.|+|.+|||..+...+ ..+..+..+.||-+|-++|..|..... ...+ .++|..
T Consensus 294 ~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAi-alaq~h~TR~iYTSPIKALSNQKfRDF-k~tF-~DvgLl 370 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAI-ALAQKHMTRTIYTSPIKALSNQKFRDF-KETF-GDVGLL 370 (1248)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHH-HHHHhhccceEecchhhhhccchHHHH-HHhc-ccccee
Confidence 3455789999999999999999999999999995555333 333446678899999999999876663 2223 345566
Q ss_pred EeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCC-----cCccchhHHHHHHHHHHHhcCCceEE
Q 007931 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH-----ERSISTDILLGLLKKIQRCRSDLRLI 200 (584)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~H-----er~~~~d~l~~~l~~~~~~~~~~~vi 200 (584)
+|. ....+ .+.++++|+++|-.++-+... ++++.+||+||+| ||++-.+-. +...+.++++|
T Consensus 371 TGD-----vqinP-eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEV------iIMlP~HV~~I 438 (1248)
T KOG0947|consen 371 TGD-----VQINP-EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEV------IIMLPRHVNFI 438 (1248)
T ss_pred ecc-----eeeCC-CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceee------eeeccccceEE
Confidence 662 23334 789999999999998876654 8999999999999 677532222 23356789999
Q ss_pred EEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC------------------------
Q 007931 201 ISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP------------------------ 255 (584)
Q Consensus 201 ~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 255 (584)
++|||+ |..+|++|.|....+.. .++....|+.|.+.+.....
T Consensus 439 lLSATVPN~~EFA~WIGRtK~K~I------------yViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~ 506 (1248)
T KOG0947|consen 439 LLSATVPNTLEFADWIGRTKQKTI------------YVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSL 506 (1248)
T ss_pred EEeccCCChHHHHHHhhhccCceE------------EEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhh
Confidence 999999 99999999997653321 13333444444443221110
Q ss_pred ---------------------------------------cchHH--HHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHH
Q 007931 256 ---------------------------------------VSDYV--QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQ 294 (584)
Q Consensus 256 ---------------------------------------~~~~~--~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~ 294 (584)
..+.. ......+.++ ....--+++|||=+++.|++.++
T Consensus 507 ~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L-~k~~lLP~VvFvFSkkrCde~a~ 585 (1248)
T KOG0947|consen 507 KKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHL-RKKNLLPVVVFVFSKKRCDEYAD 585 (1248)
T ss_pred cccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHH-hhcccCceEEEEEccccHHHHHH
Confidence 00000 0112222222 23344579999999999999999
Q ss_pred HHHHHhhh---------------------ccCCCCC---------eEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCC
Q 007931 295 LLTEEART---------------------SKKNSSG---------LIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI 344 (584)
Q Consensus 295 ~L~~~~~~---------------------~~~~~~~---------~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i 344 (584)
.|...--. ..++.|. -.++.||||+-+--+.-|+..|..|.+|||+||.+
T Consensus 586 ~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATET 665 (1248)
T KOG0947|consen 586 YLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATET 665 (1248)
T ss_pred HHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhh
Confidence 88542110 0111121 24899999999999999999999999999999999
Q ss_pred CccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEccChH
Q 007931 345 AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEE 409 (584)
Q Consensus 345 ~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~ 409 (584)
.++|||.|.-++|+++-. .+|.... ....+.+|.||+|||||. ..|.++.+....
T Consensus 666 FAMGVNMPARtvVF~Sl~----KhDG~ef------R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 666 FAMGVNMPARTVVFSSLR----KHDGNEF------RELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhhhcCCCceeEEeeehh----hccCcce------eecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999999999888887532 2343321 256789999999999998 678888776643
No 78
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.6e-28 Score=253.87 Aligned_cols=324 Identities=18% Similarity=0.174 Sum_probs=231.5
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEe
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg 128 (584)
+-+.++|...+..+.+++.|+|+|.|.+|||..+...+.. .+..+.++||-+|-++|..|.+.+...++- +||..+|
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~-sLr~kQRVIYTSPIKALSNQKYREl~~EF~--DVGLMTG 204 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAM-SLREKQRVIYTSPIKALSNQKYRELLEEFK--DVGLMTG 204 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHH-HHHhcCeEEeeChhhhhcchhHHHHHHHhc--ccceeec
Confidence 3467899999999999999999999999999555544433 344566899999999999988777554433 4677777
Q ss_pred eEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCC-----cCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH-----ERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 129 ~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~H-----er~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
.- ...+ .+..+|+|+++|-..+-.+.. .+.+.+||+||+| ||++-.+- .+.-...+.|.|.+
T Consensus 205 DV-----TInP-~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEE------TIIllP~~vr~VFL 272 (1041)
T KOG0948|consen 205 DV-----TINP-DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEE------TIILLPDNVRFVFL 272 (1041)
T ss_pred ce-----eeCC-CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeee------eEEeccccceEEEE
Confidence 31 1233 788999999999988866655 8999999999999 66643221 12235678999999
Q ss_pred eccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCC----------CcchH----HHHH----
Q 007931 203 SATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEE----------PVSDY----VQAA---- 263 (584)
Q Consensus 203 SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~----~~~~---- 263 (584)
|||+ |+.+|++|......+ +..++..+-|+-|...+..+. ...++ ...+
T Consensus 273 SATiPNA~qFAeWI~~ihkQ------------PcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l 340 (1041)
T KOG0948|consen 273 SATIPNARQFAEWICHIHKQ------------PCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVL 340 (1041)
T ss_pred eccCCCHHHHHHHHHHHhcC------------CceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHh
Confidence 9999 999999998765421 222444555555554331210 00001 1111
Q ss_pred ------------------------------HHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhh-----------
Q 007931 264 ------------------------------VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART----------- 302 (584)
Q Consensus 264 ------------------------------~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~----------- 302 (584)
+..++.........+++||+=++++|+..+-.+.+..-+
T Consensus 341 ~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~i 420 (1041)
T KOG0948|consen 341 RKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETI 420 (1041)
T ss_pred hccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHH
Confidence 112222223334567999999999999988777542111
Q ss_pred -------cc---CCCC---------CeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCc
Q 007931 303 -------SK---KNSS---------GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS 363 (584)
Q Consensus 303 -------~~---~~~~---------~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~ 363 (584)
+. ...| .-.|+.|||||-+--+..|+-.|.+|.+|+|+||.+.+.|+|.|+-++|.-
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT---- 496 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT---- 496 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----
Confidence 11 1111 124899999999999988888999999999999999999999998887763
Q ss_pred cceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEccChH
Q 007931 364 KQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEE 409 (584)
Q Consensus 364 k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~ 409 (584)
..+.||... ..|+|..+|+||+|||||. ..|.|+.++++.
T Consensus 497 ~~rKfDG~~------fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 497 AVRKFDGKK------FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eccccCCcc------eeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 344566543 2399999999999999998 679999998743
No 79
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.7e-26 Score=254.24 Aligned_cols=327 Identities=19% Similarity=0.187 Sum_probs=232.5
Q ss_pred hcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhC--Ccc
Q 007931 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG--VKV 123 (584)
Q Consensus 46 ~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~--~~v 123 (584)
...+.+..+|++.+.+|+.++.|+|+||||||||.+...++.. ...++.+++|.+|.++|..|...+..++.-. ..+
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~-al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~v 193 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIAL-ALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMV 193 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHH-HHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhc
Confidence 4667788999999999999999999999999999555544433 3446667999999999999987776665442 234
Q ss_pred eeEEeeEeeccCcCCCCCceEEEechHHHHHHHccC-CCCCCCcEEEEeCCC-----cCccchhHHHHHHHHHHHhcCCc
Q 007931 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAH-----ERSISTDILLGLLKKIQRCRSDL 197 (584)
Q Consensus 124 g~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~-~~l~~~~~iIiDE~H-----er~~~~d~l~~~l~~~~~~~~~~ 197 (584)
|..+|. -...+ .+.++++|+++|-+.+..+ ..+.++.+||+||+| +|++--+ ..+.....++
T Consensus 194 GL~TGD-----v~IN~-~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE------E~Ii~lP~~v 261 (1041)
T COG4581 194 GLMTGD-----VSINP-DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE------EVIILLPDHV 261 (1041)
T ss_pred cceecc-----eeeCC-CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHH------HHHHhcCCCC
Confidence 555662 12233 7889999999999988777 459999999999999 4443221 2233456788
Q ss_pred eEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC-c-------chHHHHH----H
Q 007931 198 RLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP-V-------SDYVQAA----V 264 (584)
Q Consensus 198 ~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-------~~~~~~~----~ 264 (584)
++|++|||+ |+..|+.|++.... .+..++..+.|+.|.+.++.... . .+..... .
T Consensus 262 ~~v~LSATv~N~~EF~~Wi~~~~~------------~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~ 329 (1041)
T COG4581 262 RFVFLSATVPNAEEFAEWIQRVHS------------QPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSAN 329 (1041)
T ss_pred cEEEEeCCCCCHHHHHHHHHhccC------------CCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhh
Confidence 999999999 99999999986541 12336666777777766654431 0 0000000 0
Q ss_pred --------------------------------------HHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHH--------
Q 007931 265 --------------------------------------STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTE-------- 298 (584)
Q Consensus 265 --------------------------------------~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~-------- 298 (584)
..+.........-++++|+=++..|+..+..+..
T Consensus 330 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~ 409 (1041)
T COG4581 330 RSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE 409 (1041)
T ss_pred hhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc
Confidence 0112222223345799999999999888777651
Q ss_pred --H---------hhhccC---CCC----------CeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCe
Q 007931 299 --E---------ARTSKK---NSS----------GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (584)
Q Consensus 299 --~---------~~~~~~---~~~----------~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v 354 (584)
. ...+.. +.| .-.++.||+||-+..+..+...|..|.+||++||.+.+.|+|+|.-
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar 489 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR 489 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc
Confidence 1 111111 111 1137799999999999999999999999999999999999999966
Q ss_pred EEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEccC
Q 007931 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYT 407 (584)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~ 407 (584)
++|+ +++.| ||... ..|.+..+|.|+.|||||. ..|.++.+..
T Consensus 490 tvv~-~~l~K---~dG~~------~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 490 TVVF-TSLSK---FDGNG------HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred ceee-eeeEE---ecCCc------eeecChhHHHHhhhhhccccccccceEEEecC
Confidence 5555 55544 55332 2389999999999999998 6798888754
No 80
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=2e-26 Score=264.82 Aligned_cols=277 Identities=18% Similarity=0.187 Sum_probs=177.2
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHH-HHHHHHhcCccCCCeEEEEeCchHHHHHHH--HHHHHHHhCCcce
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAV--ASRVAEEMGVKVG 124 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~-ip~~l~~~~~~~~~~~I~v~~~r~la~~~~--~~~~~~~~~~~vg 124 (584)
....+..|...+..+..+++++++||||||||+. ++...... ..+.++++++|+|+|+.|.. .+.++...+..+.
T Consensus 78 G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~--~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~ 155 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA--KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVK 155 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEE
Confidence 4466788888888888999999999999999943 33322221 24567899999999998743 3334444455544
Q ss_pred eEEeeEee----ccC---cCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccc-----------hhH----
Q 007931 125 EEVGYTIR----FED---FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS-----------TDI---- 182 (584)
Q Consensus 125 ~~vg~~~~----~~~---~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~-----------~d~---- 182 (584)
...|.... .+. .......+|+|+||+.|.+.+. .....++++|||||||. .+. .+|
T Consensus 156 ~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~-~L~~~k~id~~l~~lGF~~~~ 233 (1176)
T PRK09401 156 ILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDA-VLKSSKNIDKLLYLLGFSEED 233 (1176)
T ss_pred EEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHH-hhhcccchhhHHHhCCCCHHH
Confidence 44443210 000 1112258999999999998765 22256699999999993 221 111
Q ss_pred HHHHHHHHH-------------Hh--------cCCceEEEEecccChHHHH-HHhhcCCCCCCCcccccCCCCCCeEEEE
Q 007931 183 LLGLLKKIQ-------------RC--------RSDLRLIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEPAILSV 240 (584)
Q Consensus 183 l~~~l~~~~-------------~~--------~~~~~vi~~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (584)
+...+..+. .. ..+.+++++|||.+..... .+|.... .+.+
T Consensus 234 i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll-----------------~~~v 296 (1176)
T PRK09401 234 IEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL-----------------GFEV 296 (1176)
T ss_pred HHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc-----------------eEEe
Confidence 111111111 00 1267899999999654222 2232211 1111
Q ss_pred CC---ccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHH---HHHHHHHHHHHhhhccCCCCCeEEEE
Q 007931 241 EG---RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD---IDATIQLLTEEARTSKKNSSGLIILP 314 (584)
Q Consensus 241 ~~---~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~---i~~l~~~L~~~~~~~~~~~~~~~v~~ 314 (584)
.. ...++...|.... +..+.. ..+.... +.++||||+++.. ++.+++.|.+. ++.+..
T Consensus 297 ~~~~~~~rnI~~~yi~~~--~k~~~L----~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~v~~ 360 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE--DSVEKL----VELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL---------GINAEL 360 (1176)
T ss_pred cCcccccCCceEEEEEcc--cHHHHH----HHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC---------CCcEEE
Confidence 11 1123444444332 222222 2222222 3469999999776 99999999876 899999
Q ss_pred ecCCCCHHHHhcccCCCCCCCcEEEEe----CCCCccccccCC-eEEEEecCCccce
Q 007931 315 LYSGLSRAEQEQVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSKQR 366 (584)
Q Consensus 315 lh~~l~~~~r~~i~~~~~~g~~~vlva----T~i~e~Gidip~-v~~VId~g~~k~~ 366 (584)
+||+| + +.++.|++|+.+|||| ||++++|||+|+ |+|||++|..+.+
T Consensus 361 ~hg~l---~--~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~ 412 (1176)
T PRK09401 361 AISGF---E--RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFK 412 (1176)
T ss_pred EeCcH---H--HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEE
Confidence 99999 2 2359999999999999 799999999999 8999999996644
No 81
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=2.8e-25 Score=240.48 Aligned_cols=329 Identities=19% Similarity=0.268 Sum_probs=199.7
Q ss_pred HhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhC
Q 007931 45 QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMG 120 (584)
Q Consensus 45 ~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~ 120 (584)
.++.+-++.++.+++.++.-++-.|+.++||+||| +.+|.++.. . .+..+++++|.+.||.+ +....+.+.+|
T Consensus 63 ~~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~a--L-~g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 63 DKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNA--L-TGKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred HHhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHh--h-cCCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 35667777788778887776666899999999999 555644322 2 34568999999999987 44555777888
Q ss_pred CcceeEEeeEe--ecc---CcCCCCCceEEEechHHH-HHHHcc-------CCCCCCCcEEEEeCCCcC------c----
Q 007931 121 VKVGEEVGYTI--RFE---DFTNKDLTAIKFLTDGVL-LREMMD-------DPLLTKYSVIMVDEAHER------S---- 177 (584)
Q Consensus 121 ~~vg~~vg~~~--~~~---~~~~~~~~~I~~~T~~~l-l~~l~~-------~~~l~~~~~iIiDE~Her------~---- 177 (584)
..++..++... ... ..... .++|+|+||+.| .+.+.. ...++++.++||||||.- .
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y-~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIY-NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhC-CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 88876554211 111 11122 689999999999 343422 123788999999999921 1
Q ss_pred -----cchhHHHHHHHHHHHhcC--------CceEEEEecccChHHHHHHhhcCC-------------------------
Q 007931 178 -----ISTDILLGLLKKIQRCRS--------DLRLIISSATIEAKSMSAFFHARK------------------------- 219 (584)
Q Consensus 178 -----~~~d~l~~~l~~~~~~~~--------~~~vi~~SAT~~~~~~~~~~~~~~------------------------- 219 (584)
..+.......+.+..+.+ +-|-|.++-. ..+.+.++|+...
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~-G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDK-GIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHh-HHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 011111111122222211 1223333321 1222233322110
Q ss_pred -CCCCC-------------cc-------------------cccC-CCCCCeEEE-------------ECC----------
Q 007931 220 -GRRGL-------------EG-------------------VELV-PRLEPAILS-------------VEG---------- 242 (584)
Q Consensus 220 -~~~~~-------------~~-------------------~~~~-~~~~~~~~~-------------~~~---------- 242 (584)
+.+.. +. ++.. .......+. ..|
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 00000 00 0000 000000000 000
Q ss_pred ccccceEEecCCC---------------cchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCC
Q 007931 243 RGFNVQIHYVEEP---------------VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNS 307 (584)
Q Consensus 243 ~~~~v~~~~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~ 307 (584)
..|.+.+...+.. ..+.....+..+...+ ..+.++||||++++.++.++..|.+.
T Consensus 378 ~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~-------- 447 (762)
T TIGR03714 378 ETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLRE-------- 447 (762)
T ss_pred HHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHC--------
Confidence 0112222111110 1122333444444443 34678999999999999999999876
Q ss_pred CCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccC---------CeEEEEecCCccceeecCCCCcccce
Q 007931 308 SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE---------GIVYVVDSGFSKQRFYNPISDIENLV 378 (584)
Q Consensus 308 ~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip---------~v~~VId~g~~k~~~~d~~~~~~~l~ 378 (584)
++....+||.+.+.++..+..+++.| +|+||||+|++|+||| ++.+|+.+..
T Consensus 448 -gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~---------------- 508 (762)
T TIGR03714 448 -GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM---------------- 508 (762)
T ss_pred -CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCC----------------
Confidence 78889999999999998888888777 7999999999999999 9999998655
Q ss_pred eeeccHHhHHHhccccCCC-CCcEEEEccChHH
Q 007931 379 VAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (584)
Q Consensus 379 ~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (584)
|..... .||+||+||. .+|.++.+++.++
T Consensus 509 --ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 509 --ENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred --CCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 444444 8999999999 8999999888644
No 82
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=4.8e-25 Score=210.35 Aligned_cols=290 Identities=19% Similarity=0.208 Sum_probs=196.4
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhC-CcceeEEeeEeecc
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG-VKVGEEVGYTIRFE 134 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~-~~vg~~vg~~~~~~ 134 (584)
..+++.+.+.+..+|.|-||+|||..+-+-+... . ..|..|+++-||--...+++.|+.+.+. +.+....|.+..
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a-l-~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~-- 182 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA-L-NQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDS-- 182 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH-H-hcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCch--
Confidence 4567778889999999999999995544433322 2 2234578888888888899999888775 777777764322
Q ss_pred CcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHH
Q 007931 135 DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (584)
Q Consensus 135 ~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~ 214 (584)
.. .+.++++|...|++.- +.++++||||++......|..+.+.-.-. ....--.|.||||+..+.-.+.
T Consensus 183 ---~f-r~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~a-rk~~g~~IylTATp~k~l~r~~ 251 (441)
T COG4098 183 ---YF-RAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA-RKKEGATIYLTATPTKKLERKI 251 (441)
T ss_pred ---hc-cccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHh-hcccCceEEEecCChHHHHHHh
Confidence 22 5789999999999873 46899999999966655555444332222 2334458899999865544443
Q ss_pred hhcCCCCCCCcccccCCCCCCeEEEECCccc----cceEEecCCCcchHHHH-----HHHHHHHHHhcCCCCCEEEEeCc
Q 007931 215 FHARKGRRGLEGVELVPRLEPAILSVEGRGF----NVQIHYVEEPVSDYVQA-----AVSTVLLIHDKEPPGDILVFLTG 285 (584)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~iLVF~~~ 285 (584)
..+.. ..+.++.|.+ |+..+.-.......+.. .+...+.-+ ...+.++|||+|+
T Consensus 252 ~~g~~----------------~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq-~~~~~P~liF~p~ 314 (441)
T COG4098 252 LKGNL----------------RILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQ-RKTGRPVLIFFPE 314 (441)
T ss_pred hhCCe----------------eEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHH-HhcCCcEEEEecc
Confidence 33321 1355555543 22211111111111111 111111111 1345679999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccc
Q 007931 286 QDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (584)
Q Consensus 286 ~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~ 365 (584)
....+++++.|++.+ +...+...||. ...|.+..+.|++|+.++|++|.|+|+|+|+|+|+++|-
T Consensus 315 I~~~eq~a~~lk~~~-------~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl------ 379 (441)
T COG4098 315 IETMEQVAAALKKKL-------PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL------ 379 (441)
T ss_pred hHHHHHHHHHHHhhC-------Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe------
Confidence 999999999997764 46778899987 457888889999999999999999999999999999773
Q ss_pred eeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEE
Q 007931 366 RFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKC 402 (584)
Q Consensus 366 ~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~ 402 (584)
+.... -.+.++.+|.+||+||. ..|..
T Consensus 380 ---gaeh~-------vfTesaLVQIaGRvGRs~~~PtGdv 409 (441)
T COG4098 380 ---GAEHR-------VFTESALVQIAGRVGRSLERPTGDV 409 (441)
T ss_pred ---cCCcc-------cccHHHHHHHhhhccCCCcCCCCcE
Confidence 22221 35789999999999998 34654
No 83
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2e-25 Score=241.59 Aligned_cols=320 Identities=13% Similarity=0.112 Sum_probs=186.1
Q ss_pred CCCchHHHHHHHHHHhcC---CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcce
Q 007931 48 RLPVYKYRTAILYLVETH---ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~---~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg 124 (584)
...++.+|.+.+..+..+ +..+|+.|||+|||.+.-..+... ++++|+++|...++ .++.+.+.+..+...+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv-~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSV-EQWKQQFKMWSTIDDS 327 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHH-HHHHHHHHHhcCCCCc
Confidence 345788998888887643 368999999999996554443322 34577777665544 4566666665543322
Q ss_pred eEEeeEeeccCcCCCCCceEEEechHHHHHHHccC-------CCC--CCCcEEEEeCCCcCccchhHHHHHHHHHHHhcC
Q 007931 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-------PLL--TKYSVIMVDEAHERSISTDILLGLLKKIQRCRS 195 (584)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~-------~~l--~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~ 195 (584)
....+........ .....|+|+|++++....... ..+ ..+++||+||||. .. ... .+.+...-.
T Consensus 328 ~I~~~tg~~k~~~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-lp-A~~----fr~il~~l~ 400 (732)
T TIGR00603 328 QICRFTSDAKERF-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-VP-AAM----FRRVLTIVQ 400 (732)
T ss_pred eEEEEecCccccc-ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-cc-HHH----HHHHHHhcC
Confidence 2212221111111 114789999999875422111 112 4689999999993 32 222 222222223
Q ss_pred CceEEEEecccC--h---HHHHHHhhcCCCCCCCcccccCCCCCCeE---EEECCccccceEEecCCCcch-H-----HH
Q 007931 196 DLRLIISSATIE--A---KSMSAFFHARKGRRGLEGVELVPRLEPAI---LSVEGRGFNVQIHYVEEPVSD-Y-----VQ 261 (584)
Q Consensus 196 ~~~vi~~SAT~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~-~-----~~ 261 (584)
....+++|||+- - ..+..++|.......+..........+.. +.++-.. .....|+...... . ..
T Consensus 401 a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~-~~~~~yl~~~~~~k~~l~~~np 479 (732)
T TIGR00603 401 AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTP-EFYREYLRENSRKRMLLYVMNP 479 (732)
T ss_pred cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCH-HHHHHHHHhcchhhhHHhhhCh
Confidence 345799999991 1 12333344322222222111111111100 1111000 0000011000000 0 00
Q ss_pred HHHHH---HHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC-CcE
Q 007931 262 AAVST---VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK 337 (584)
Q Consensus 262 ~~~~~---i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-~~~ 337 (584)
..... ++..+. ..+.++||||.....++.+++.| + +..+||+++..+|.++++.|++| .++
T Consensus 480 ~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L------------~--~~~I~G~ts~~ER~~il~~Fr~~~~i~ 544 (732)
T TIGR00603 480 NKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKL------------G--KPFIYGPTSQQERMQILQNFQHNPKVN 544 (732)
T ss_pred HHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHc------------C--CceEECCCCHHHHHHHHHHHHhCCCcc
Confidence 11122 222222 35678999999998888877765 2 34589999999999999999865 789
Q ss_pred EEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCC-cEE-------EEccChH
Q 007931 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP-GKC-------YRLYTEE 409 (584)
Q Consensus 338 vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~-G~~-------~~l~~~~ 409 (584)
+||+|+++.+|||+|++++||.... . +-|..+|.||+||++|..+ |.+ |.|++++
T Consensus 545 vLv~SkVgdeGIDlP~a~vvI~~s~--------~---------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 545 TIFLSKVGDTSIDLPEANVLIQISS--------H---------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred EEEEecccccccCCCCCCEEEEeCC--------C---------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 9999999999999999999997443 0 2489999999999999954 343 8888866
Q ss_pred HHh
Q 007931 410 YFV 412 (584)
Q Consensus 410 ~~~ 412 (584)
..+
T Consensus 608 T~E 610 (732)
T TIGR00603 608 TQE 610 (732)
T ss_pred chH
Confidence 544
No 84
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=1.7e-26 Score=225.34 Aligned_cols=308 Identities=19% Similarity=0.215 Sum_probs=207.1
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEe-eE
Q 007931 54 YRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG-YT 130 (584)
Q Consensus 54 ~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg-~~ 130 (584)
+...+.-.+..+++|.|+.|||+||| +|+|.++.. +..|+++|..+|...++-.. ..+..++..... .+
T Consensus 25 QE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~------gITIV~SPLiALIkDQiDHL--~~LKVp~~SLNSKlS 96 (641)
T KOG0352|consen 25 QEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG------GITIVISPLIALIKDQIDHL--KRLKVPCESLNSKLS 96 (641)
T ss_pred HHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC------CeEEEehHHHHHHHHHHHHH--HhcCCchhHhcchhh
Confidence 33456666788899999999999999 999977643 35799999988888776542 122222211111 00
Q ss_pred ------eeccCcCCCCCceEEEechHHH--------HHHHccCCCCCCCcEEEEeCCCcCc-cchhHHHHHHHH--HHHh
Q 007931 131 ------IRFEDFTNKDLTAIKFLTDGVL--------LREMMDDPLLTKYSVIMVDEAHERS-ISTDILLGLLKK--IQRC 193 (584)
Q Consensus 131 ------~~~~~~~~~~~~~I~~~T~~~l--------l~~l~~~~~l~~~~~iIiDE~Her~-~~~d~l~~~l~~--~~~~ 193 (584)
+-.+-.......+++|.||+.. ++-|.+ -..++++|+||||.-+ ...||-..+|+. ++..
T Consensus 97 t~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~---r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 97 TVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN---RDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred HHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh---hceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 0011111122689999999763 333322 3456899999999655 334565555543 5667
Q ss_pred cCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHH--
Q 007931 194 RSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIH-- 271 (584)
Q Consensus 194 ~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~-- 271 (584)
.++...+.++||.+.+.-.+.+....-.. +..++..| .|.-..+|... -.+.+......+.+..
T Consensus 174 ~~~vpwvALTATA~~~VqEDi~~qL~L~~-----------PVAiFkTP--~FR~NLFYD~~-~K~~I~D~~~~LaDF~~~ 239 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQEDIAFQLKLRN-----------PVAIFKTP--TFRDNLFYDNH-MKSFITDCLTVLADFSSS 239 (641)
T ss_pred CCCCceEEeecccChhHHHHHHHHHhhcC-----------cHHhccCc--chhhhhhHHHH-HHHHhhhHhHhHHHHHHH
Confidence 78999999999997765555544322100 00012111 12112222111 0111111111111111
Q ss_pred -----------hcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEE
Q 007931 272 -----------DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (584)
Q Consensus 272 -----------~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlv 340 (584)
.+...|.-||||.|++++++++-.|... ++....+|+||...||.+|.+.+-+|+.-||+
T Consensus 240 ~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~ 310 (641)
T KOG0352|consen 240 NLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIA 310 (641)
T ss_pred hcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc---------CcchHHHhcccccchhHHHHHHHhcCCCCEEE
Confidence 1123477899999999999999999765 89999999999999999999999999999999
Q ss_pred eCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHhh
Q 007931 341 STNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 341 aT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (584)
||+..++|||-|+|++||+++. +-+.+.|.|-.|||||. .+..|=..|++++.+.
T Consensus 311 AT~SFGMGVDKp~VRFViHW~~------------------~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 311 ATVSFGMGVDKPDVRFVIHWSP------------------SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred EEeccccccCCcceeEEEecCc------------------hhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 9999999999999999999776 77899999999999999 6677877788776554
No 85
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=3.6e-25 Score=241.95 Aligned_cols=327 Identities=19% Similarity=0.209 Sum_probs=199.3
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCc
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVK 122 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~ 122 (584)
+.+-.+.+.-+++..+.-++-.|..+.||+||| +.+|.++... .+..+.+++|++.||.+ .....+.+.+|..
T Consensus 73 R~~g~~p~~vQl~~~~~l~~G~Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~ 149 (790)
T PRK09200 73 RVLGMRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLT 149 (790)
T ss_pred HHhCCCCchHHHHhHHHHcCCceeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 444444444444444443444499999999999 4445543322 45678999999999998 4555688888999
Q ss_pred ceeEEeeEe-eccCcCCCCCceEEEechHHH-HHHHccC-------CCCCCCcEEEEeCCCc------Ccc---------
Q 007931 123 VGEEVGYTI-RFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHE------RSI--------- 178 (584)
Q Consensus 123 vg~~vg~~~-~~~~~~~~~~~~I~~~T~~~l-l~~l~~~-------~~l~~~~~iIiDE~He------r~~--------- 178 (584)
+|..+|... ..+..... .++|+|+|++.+ .+.+..+ ..++.+.++||||||. |.+
T Consensus 150 v~~i~g~~~~~~~r~~~y-~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~ 228 (790)
T PRK09200 150 VGLNFSDIDDASEKKAIY-EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRV 228 (790)
T ss_pred EEEEeCCCCcHHHHHHhc-CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCcc
Confidence 988887544 32233333 689999999888 3333221 2378899999999992 111
Q ss_pred chhHHHHHHHHHHHhc--------CCceEEEEecccChHHHHHHhhcCCC--------------------------CCCC
Q 007931 179 STDILLGLLKKIQRCR--------SDLRLIISSATIEAKSMSAFFHARKG--------------------------RRGL 224 (584)
Q Consensus 179 ~~d~l~~~l~~~~~~~--------~~~~vi~~SAT~~~~~~~~~~~~~~~--------------------------~~~~ 224 (584)
.........+.+.... .+.+.+.++.. ....+.++|+.... .+..
T Consensus 229 ~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~-g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV 307 (790)
T PRK09200 229 QSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQ-GIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIV 307 (790)
T ss_pred ccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHh-HHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 1111111111111111 12233333321 12222222221110 0000
Q ss_pred -------------cc-------------------cccC------------------------------------CCCCCe
Q 007931 225 -------------EG-------------------VELV------------------------------------PRLEPA 236 (584)
Q Consensus 225 -------------~~-------------------~~~~------------------------------------~~~~~~ 236 (584)
+. ++.. ..-...
T Consensus 308 ~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~ 387 (790)
T PRK09200 308 YDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNME 387 (790)
T ss_pred ECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCc
Confidence 00 0000 000011
Q ss_pred EEEECCccccceEEecCC----CcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEE
Q 007931 237 ILSVEGRGFNVQIHYVEE----PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLII 312 (584)
Q Consensus 237 ~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v 312 (584)
++.+|.. .|+.....+. ...+.....+..+...+ ..+.++||||++.+.++.++..|.+. ++.+
T Consensus 388 v~~IPt~-kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~---------gi~~ 455 (790)
T PRK09200 388 VVQIPTN-RPIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEA---------GIPH 455 (790)
T ss_pred EEECCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC---------CCCE
Confidence 2222221 1111111110 11122233333333332 34678999999999999999999876 8899
Q ss_pred EEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCcccccc---CCeE-----EEEecCCccceeecCCCCcccceeeeccH
Q 007931 313 LPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTL---EGIV-----YVVDSGFSKQRFYNPISDIENLVVAPISK 384 (584)
Q Consensus 313 ~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidi---p~v~-----~VId~g~~k~~~~d~~~~~~~l~~~~~s~ 384 (584)
..+||.+...++..+...+..| +|+||||+|++|+|| |+|. +||++++ |.|.
T Consensus 456 ~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~------------------p~s~ 515 (790)
T PRK09200 456 NLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTER------------------MESR 515 (790)
T ss_pred EEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccC------------------CCCH
Confidence 9999999998888888887766 799999999999999 7998 9999888 8899
Q ss_pred HhHHHhccccCCC-CCcEEEEccChHH
Q 007931 385 ASARQRAGRAGRV-RPGKCYRLYTEEY 410 (584)
Q Consensus 385 ~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (584)
..|.||+||+||. .+|.++.+++.++
T Consensus 516 r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 516 RVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred HHHHHhhccccCCCCCeeEEEEEcchH
Confidence 9999999999999 8999999888543
No 86
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=9.4e-26 Score=240.82 Aligned_cols=324 Identities=19% Similarity=0.217 Sum_probs=218.3
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHH--HHHHHhCCcceeEEeeEeeccCcCC
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEMGVKVGEEVGYTIRFEDFTN 138 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~--~~~~~~~~~vg~~vg~~~~~~~~~~ 138 (584)
.+.++.+.|...||+.|||.....+++.........++.+.|-..++.+.... -+....|..+.. |.-++.....
T Consensus 236 ~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~---y~g~~~p~~~ 312 (1008)
T KOG0950|consen 236 RLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEE---YAGRFPPEKR 312 (1008)
T ss_pred hhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchh---hcccCCCCCc
Confidence 34578899999999999997777777666555556677777776666554332 233344444433 3333333333
Q ss_pred CCCceEEEechHH---HHHHHccCCCCCCCcEEEEeCCC-----cCccchhHHHHHHHHHHH--hcCCceEEEEeccc-C
Q 007931 139 KDLTAIKFLTDGV---LLREMMDDPLLTKYSVIMVDEAH-----ERSISTDILLGLLKKIQR--CRSDLRLIISSATI-E 207 (584)
Q Consensus 139 ~~~~~I~~~T~~~---ll~~l~~~~~l~~~~~iIiDE~H-----er~~~~d~l~~~l~~~~~--~~~~~~vi~~SAT~-~ 207 (584)
.....+.+||.++ +.+.+.....+..++.|||||.| +|+. .+..++.+++- ....+++|+||||+ |
T Consensus 313 ~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~---~lE~~l~k~~y~~~~~~~~iIGMSATi~N 389 (1008)
T KOG0950|consen 313 RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGA---ILELLLAKILYENLETSVQIIGMSATIPN 389 (1008)
T ss_pred ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccch---HHHHHHHHHHHhccccceeEeeeecccCC
Confidence 4468899999976 45556666668889999999999 4444 44445555443 33447899999999 9
Q ss_pred hHHHHHHhhcCCCCCCCcccccCCCCCCe--EEEECCccccceEE---ecCC---CcchH-HHHHHHHHHHHHhcCCCCC
Q 007931 208 AKSMSAFFHARKGRRGLEGVELVPRLEPA--ILSVEGRGFNVQIH---YVEE---PVSDY-VQAAVSTVLLIHDKEPPGD 278 (584)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~---~~~~---~~~~~-~~~~~~~i~~~~~~~~~~~ 278 (584)
.+.+++|+.........+++++.....+. +.... +.-.+... +... ..+|. +....+.+ .++.+
T Consensus 390 ~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~------~e~~~ 462 (1008)
T KOG0950|consen 390 NSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETA------PEGSS 462 (1008)
T ss_pred hHHHHHHhhhhheecccCcccchhccCCCcccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhh------hcCCe
Confidence 99999999987766666666655443211 11110 11100000 0000 00010 00001111 23345
Q ss_pred EEEEeCcHHHHHHHHHHHHHHhhhc-----------------------------cCCCCCeEEEEecCCCCHHHHhcccC
Q 007931 279 ILVFLTGQDDIDATIQLLTEEARTS-----------------------------KKNSSGLIILPLYSGLSRAEQEQVFS 329 (584)
Q Consensus 279 iLVF~~~~~~i~~l~~~L~~~~~~~-----------------------------~~~~~~~~v~~lh~~l~~~~r~~i~~ 329 (584)
+|||||++..++.++..+....+.. ....-...+++||+|++.++|+.|..
T Consensus 463 ~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~ 542 (1008)
T KOG0950|consen 463 VLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEA 542 (1008)
T ss_pred EEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHH
Confidence 9999999999999987776544321 01123456999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEcc
Q 007931 330 PTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLY 406 (584)
Q Consensus 330 ~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~ 406 (584)
.|++|...|++||++++.|+|.|..+++|.+-+.. ....+..+|.||+|||||+ .-|.++.++
T Consensus 543 afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g--------------~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~ 608 (1008)
T KOG0950|consen 543 AFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVG--------------REFLTRLEYKQMVGRAGRTGIDTLGDSILII 608 (1008)
T ss_pred HHHhcCeEEEEecchhhccCcCCcceeEEeCCccc--------------cchhhhhhHHhhhhhhhhcccccCcceEEEe
Confidence 99999999999999999999999999999765532 2267899999999999999 678999998
Q ss_pred ChHHH
Q 007931 407 TEEYF 411 (584)
Q Consensus 407 ~~~~~ 411 (584)
.+.+-
T Consensus 609 k~~e~ 613 (1008)
T KOG0950|consen 609 KSSEK 613 (1008)
T ss_pred eccch
Confidence 86653
No 87
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.1e-24 Score=233.39 Aligned_cols=106 Identities=25% Similarity=0.255 Sum_probs=92.0
Q ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccC---
Q 007931 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE--- 352 (584)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip--- 352 (584)
+.++||||++++.++.+++.|.+. ++.+..+||.+...++..+...+. ..+|+||||+|++|+||+
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag~--~g~VlVATdmAgRGtDI~l~~ 541 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAGQ--RGRITVATNMAGRGTDIKLEP 541 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcCC--CCcEEEEccchhcccCcCCcc
Confidence 467999999999999999999876 889999999987666665555544 446999999999999999
Q ss_pred CeE-----EEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHH
Q 007931 353 GIV-----YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (584)
Q Consensus 353 ~v~-----~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (584)
+|. +||++++ |.|...|.||+||+||. .+|.++.+++.++
T Consensus 542 ~V~~~GGLhVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 542 GVAARGGLHVILTER------------------HDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred chhhcCCCEEEEcCC------------------CCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 776 9999888 88999999999999999 8999999998644
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.8e-25 Score=238.38 Aligned_cols=295 Identities=19% Similarity=0.177 Sum_probs=185.3
Q ss_pred EEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccC-----cCCCCCce
Q 007931 69 IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED-----FTNKDLTA 143 (584)
Q Consensus 69 iv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~-----~~~~~~~~ 143 (584)
++.|+||||||...-.++... ...++++++++|++.|+.| ..+++.+.++..+....|.....+. .......+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q-~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQ-MIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHH-HHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 478999999995443333222 3356678999999988875 4566777777766655552211111 11122578
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHH----HHHHHHHHhcCCceEEEEecccChHHHHHHhhcCC
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILL----GLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~----~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~ 219 (584)
|+++|+..+.. .+.++++|||||+|+-+...+-.. .-+...+....+.++|++|||+..+.+.....+..
T Consensus 79 IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~ 152 (505)
T TIGR00595 79 VVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAY 152 (505)
T ss_pred EEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCe
Confidence 99999987642 277899999999995443322111 11222333456889999999998887766543321
Q ss_pred CCCCCcccccCCCCCCeEEEECC----cccc-ceEEecCCCc--chHHHHHHHHHHHHHhcCCCCCEEEEeCcHHH----
Q 007931 220 GRRGLEGVELVPRLEPAILSVEG----RGFN-VQIHYVEEPV--SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD---- 288 (584)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-v~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~---- 288 (584)
. .+..+. ...| +++....... ....+.+.+.+.+.. ..++++|||+|++..
T Consensus 153 ~----------------~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~ 214 (505)
T TIGR00595 153 R----------------LLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNL 214 (505)
T ss_pred E----------------EeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCee
Confidence 0 111111 1111 1111111100 111222333333333 345679999887653
Q ss_pred --------------------------------------------------------HHHHHHHHHHHhhhccCCCCCeEE
Q 007931 289 --------------------------------------------------------IDATIQLLTEEARTSKKNSSGLII 312 (584)
Q Consensus 289 --------------------------------------------------------i~~l~~~L~~~~~~~~~~~~~~~v 312 (584)
++++.+.|.+.+ ++..+
T Consensus 215 ~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-------p~~~v 287 (505)
T TIGR00595 215 LCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-------PGARI 287 (505)
T ss_pred EhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-------CCCcE
Confidence 477777777664 47889
Q ss_pred EEecCCCCHHHH--hcccCCCCCCCcEEEEeCCCCccccccCCeEEEE--ecCCccceeecCCCCcccceeeeccHHhHH
Q 007931 313 LPLYSGLSRAEQ--EQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV--DSGFSKQRFYNPISDIENLVVAPISKASAR 388 (584)
Q Consensus 313 ~~lh~~l~~~~r--~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VI--d~g~~k~~~~d~~~~~~~l~~~~~s~~~~~ 388 (584)
..+|++++..++ +++++.|++|+.+|||+|++++.|+|+|+|+.|+ |.+. ..+...+.........+.
T Consensus 288 ~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~--------~l~~pd~ra~E~~~~ll~ 359 (505)
T TIGR00595 288 ARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADS--------GLHSPDFRAAERGFQLLT 359 (505)
T ss_pred EEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcc--------cccCcccchHHHHHHHHH
Confidence 999999987665 7899999999999999999999999999999874 5332 222222222223467889
Q ss_pred HhccccCCC-CCcEEEE
Q 007931 389 QRAGRAGRV-RPGKCYR 404 (584)
Q Consensus 389 QR~GRaGR~-~~G~~~~ 404 (584)
|++|||||. .+|.++.
T Consensus 360 q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 360 QVAGRAGRAEDPGQVII 376 (505)
T ss_pred HHHhccCCCCCCCEEEE
Confidence 999999997 7898873
No 89
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.93 E-value=7.9e-26 Score=250.62 Aligned_cols=312 Identities=18% Similarity=0.182 Sum_probs=218.6
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEee
Q 007931 52 YKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (584)
Q Consensus 52 ~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~ 129 (584)
...|.+++.+...++.++|..|||.||| +|+|.++... -.|+|.|...|...++... ...++......+.
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g------itvVISPL~SLm~DQv~~L--~~~~I~a~~L~s~ 337 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG------VTVVISPLISLMQDQVTHL--SKKGIPACFLSSI 337 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC------ceEEeccHHHHHHHHHHhh--hhcCcceeecccc
Confidence 3556677779999999999999999999 9999876543 5689999999998877764 3344444433333
Q ss_pred EeeccC-------cCCCCCceEEEechHHHHHHHcc---CCCCCC---CcEEEEeCCCcCccc-hhHHHHH--HHHHHHh
Q 007931 130 TIRFED-------FTNKDLTAIKFLTDGVLLREMMD---DPLLTK---YSVIMVDEAHERSIS-TDILLGL--LKKIQRC 193 (584)
Q Consensus 130 ~~~~~~-------~~~~~~~~I~~~T~~~ll~~l~~---~~~l~~---~~~iIiDE~Her~~~-~d~l~~~--l~~~~~~ 193 (584)
+..-+. .......+|+|.||+.+...-.- ...+.. +.++||||||.-+-+ .||-..+ +..++..
T Consensus 338 q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~ 417 (941)
T KOG0351|consen 338 QTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR 417 (941)
T ss_pred ccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh
Confidence 222110 11112689999999987643211 111333 789999999955422 2443333 3334556
Q ss_pred cCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhc
Q 007931 194 RSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDK 273 (584)
Q Consensus 194 ~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~ 273 (584)
.+...+|.+|||.....-.+......... +.++...-... ..+|.-.+..+ .+........+...
T Consensus 418 ~~~vP~iALTATAT~~v~~DIi~~L~l~~------------~~~~~~sfnR~--NL~yeV~~k~~-~~~~~~~~~~~~~~ 482 (941)
T KOG0351|consen 418 FPGVPFIALTATATERVREDVIRSLGLRN------------PELFKSSFNRP--NLKYEVSPKTD-KDALLDILEESKLR 482 (941)
T ss_pred CCCCCeEEeehhccHHHHHHHHHHhCCCC------------cceecccCCCC--CceEEEEeccC-ccchHHHHHHhhhc
Confidence 67789999999995544334333221110 00111110000 11111111110 12233344445555
Q ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCC
Q 007931 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG 353 (584)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~ 353 (584)
.+.+.+||+|.++.+++.++..|++. ++...+||+||++.+|..|...|-.++.+||+||=+.++|||.||
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~D 553 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPD 553 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCc
Confidence 67788999999999999999999887 688999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHhh
Q 007931 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 354 v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (584)
|+.||++++ |-|.+.|.|-+|||||. .+..|..+|+..++..
T Consensus 554 VR~ViH~~l------------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 554 VRFVIHYSL------------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred eeEEEECCC------------------chhHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 999999999 89999999999999999 7889999999887655
No 90
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=9.4e-25 Score=241.27 Aligned_cols=316 Identities=20% Similarity=0.212 Sum_probs=199.5
Q ss_pred CCCchHHHHHHHHHHhc---CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcce
Q 007931 48 RLPVYKYRTAILYLVET---HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~---~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg 124 (584)
...+...|.++++.+.+ ++++++.|+||||||......+... ...++++++++|+++|+.| +.+++.+.++..+.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~-l~~g~~vLvLvPt~~L~~Q-~~~~l~~~fg~~v~ 219 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEV-LAQGKQALVLVPEIALTPQ-MLARFRARFGAPVA 219 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHH-HHHHHHHHhCCCEE
Confidence 34567788888888876 4789999999999994443333322 2345678999999999875 45566677787777
Q ss_pred eEEeeEeeccC-----cCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHH----HHHHHHHHHhcC
Q 007931 125 EEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDIL----LGLLKKIQRCRS 195 (584)
Q Consensus 125 ~~vg~~~~~~~-----~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l----~~~l~~~~~~~~ 195 (584)
..+|.....+. .......+|+++|++.+.. .+.++++|||||+|+-+...+-. ..-+...+....
T Consensus 220 ~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~------p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 220 VLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL------PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc------cccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 66663322111 1112257999999987641 27889999999999544332110 111122233456
Q ss_pred CceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc----cc-ceEEecCC-----CcchHHHHHHH
Q 007931 196 DLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG----FN-VQIHYVEE-----PVSDYVQAAVS 265 (584)
Q Consensus 196 ~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-v~~~~~~~-----~~~~~~~~~~~ 265 (584)
+.++|++|||+..+.+.....+... .+..+.+. .| +++..... ........+..
T Consensus 294 ~~~~il~SATps~~s~~~~~~g~~~----------------~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~ 357 (679)
T PRK05580 294 NIPVVLGSATPSLESLANAQQGRYR----------------LLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLE 357 (679)
T ss_pred CCCEEEEcCCCCHHHHHHHhcccee----------------EEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHH
Confidence 8899999999988877654332210 22222221 11 11111100 00001122222
Q ss_pred HHHHHHhcCCCCCEEEEeCcHH----------------------------------------------------------
Q 007931 266 TVLLIHDKEPPGDILVFLTGQD---------------------------------------------------------- 287 (584)
Q Consensus 266 ~i~~~~~~~~~~~iLVF~~~~~---------------------------------------------------------- 287 (584)
.+.+.. ..+.++|||+|.+.
T Consensus 358 ~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~ 435 (679)
T PRK05580 358 AIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPV 435 (679)
T ss_pred HHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEe
Confidence 232222 23456888877532
Q ss_pred --HHHHHHHHHHHHhhhccCCCCCeEEEEecCCCC--HHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEE--ecC
Q 007931 288 --DIDATIQLLTEEARTSKKNSSGLIILPLYSGLS--RAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV--DSG 361 (584)
Q Consensus 288 --~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~--~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VI--d~g 361 (584)
.++++++.|.+.+ ++..+..+|+++. .++++++++.|++|+.+|||+|+++++|+|+|+|+.|+ |.+
T Consensus 436 g~G~e~~~e~l~~~f-------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD 508 (679)
T PRK05580 436 GPGTERLEEELAELF-------PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDAD 508 (679)
T ss_pred eccHHHHHHHHHHhC-------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCc
Confidence 3466666666654 4778999999987 46788999999999999999999999999999999984 433
Q ss_pred CccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEE
Q 007931 362 FSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (584)
Q Consensus 362 ~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (584)
. ..+...+.........+.|++|||||. .+|.++.
T Consensus 509 ~--------~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 509 L--------GLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred h--------hccCCccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 2 122222222223467889999999997 7898874
No 91
>PRK14701 reverse gyrase; Provisional
Probab=99.93 E-value=3.9e-25 Score=259.27 Aligned_cols=315 Identities=18% Similarity=0.117 Sum_probs=194.2
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHH-HHHHHHhcCccCCCeEEEEeCchHHHHHHHHH--HHHHHhCC--cc
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEMGV--KV 123 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~-ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~--~~~~~~~~--~v 123 (584)
...+..|.+++..+.++++++++||||||||+. ++..+... ..+.++++++|+++|+.|.+.. .++...+. .+
T Consensus 78 ~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v 155 (1638)
T PRK14701 78 FEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRL 155 (1638)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeE
Confidence 356677888888888899999999999999952 22222211 2445789999999999875433 33444332 22
Q ss_pred eeEEeeEeeccC-----cCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCcc---c-------hhHHHHHHH
Q 007931 124 GEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI---S-------TDILLGLLK 188 (584)
Q Consensus 124 g~~vg~~~~~~~-----~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~---~-------~d~l~~~l~ 188 (584)
....|.....+. .......+|+|+||+.|.+.+.... ..++++|||||||.-.- + .+|...+..
T Consensus 156 ~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 156 VYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 233332111111 1112257999999999887654321 26799999999993211 1 223222221
Q ss_pred ----HH------------------H----HhcCCce-EEEEecccCh-HHHHHHhhcCCCCCCCcccccCCCCCCeEEEE
Q 007931 189 ----KI------------------Q----RCRSDLR-LIISSATIEA-KSMSAFFHARKGRRGLEGVELVPRLEPAILSV 240 (584)
Q Consensus 189 ----~~------------------~----~~~~~~~-vi~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (584)
.+ . ......+ ++++|||.+. .....+|.... .+.+
T Consensus 235 ~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l-----------------~f~v 297 (1638)
T PRK14701 235 KAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL-----------------GFEV 297 (1638)
T ss_pred HHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe-----------------EEEe
Confidence 11 0 1122334 5779999965 34555554322 2333
Q ss_pred CCcc---ccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHH---HHHHHHHHHHHhhhccCCCCCeEEEE
Q 007931 241 EGRG---FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD---IDATIQLLTEEARTSKKNSSGLIILP 314 (584)
Q Consensus 241 ~~~~---~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~---i~~l~~~L~~~~~~~~~~~~~~~v~~ 314 (584)
.... ..+...|......+ .. .+..+.... +...||||++++. ++++++.|.+. ++.+..
T Consensus 298 ~~~~~~lr~i~~~yi~~~~~~-k~----~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~---------Gi~a~~ 362 (1638)
T PRK14701 298 GSGRSALRNIVDVYLNPEKII-KE----HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED---------GFKIEL 362 (1638)
T ss_pred cCCCCCCCCcEEEEEECCHHH-HH----HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC---------CCeEEE
Confidence 2221 23344443222111 12 222222222 3568999999876 47888888775 899999
Q ss_pred ecCCCCHHHHhcccCCCCCCCcEEEEeC----CCCccccccCC-eEEEEecCCcccee----ecCCCCcccceeeeccHH
Q 007931 315 LYSGLSRAEQEQVFSPTPRGKRKVVIST----NIAETSLTLEG-IVYVVDSGFSKQRF----YNPISDIENLVVAPISKA 385 (584)
Q Consensus 315 lh~~l~~~~r~~i~~~~~~g~~~vlvaT----~i~e~Gidip~-v~~VId~g~~k~~~----~d~~~~~~~l~~~~~s~~ 385 (584)
+||+ |.++++.|++|+.+||||| +++++|||+|+ |+|||++|..|.++ |...... + +. ..
T Consensus 363 ~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~~-~~ 431 (1638)
T PRK14701 363 VSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---LG-LL 431 (1638)
T ss_pred ecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---hc-ch
Confidence 9995 8889999999999999999 59999999999 99999999977442 2211111 0 01 34
Q ss_pred hHHHhccccCCC-CCcEEEEccChH
Q 007931 386 SARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 386 ~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
...++.|||||. .++.++..+..+
T Consensus 432 ~~~~~~~~a~~~g~~~~~~~~~~~~ 456 (1638)
T PRK14701 432 SEILKIEEELKEGIPIEGVLDVFPE 456 (1638)
T ss_pred HHHHHhhhhcccCCcchhHHHhHHH
Confidence 456778999998 566676444433
No 92
>PRK09694 helicase Cas3; Provisional
Probab=99.93 E-value=1.4e-23 Score=233.52 Aligned_cols=316 Identities=19% Similarity=0.187 Sum_probs=179.6
Q ss_pred CchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc-CccCCCeEEEEeCchHHHHHHHHHHHHH----Hh-CCcc
Q 007931 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAE----EM-GVKV 123 (584)
Q Consensus 50 P~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~-~~~~~~~~I~v~~~r~la~~~~~~~~~~----~~-~~~v 123 (584)
..+.+|..+.+...+...+||.||||+|||..+-.+.... ......++++..|++..+. ++.+|+.+ .+ ...+
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan-~m~~Rl~~~~~~~f~~~~v 364 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATAN-AMLSRLEALASKLFPSPNL 364 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHH-HHHHHHHHHHHHhcCCCce
Confidence 4567777665544457889999999999994433222211 1112345677777666554 45555443 22 2334
Q ss_pred eeEEeeEe---eccC---------------------cC-CC---CCceEEEechHHHHHHHccCC--CCCCC----cEEE
Q 007931 124 GEEVGYTI---RFED---------------------FT-NK---DLTAIKFLTDGVLLREMMDDP--LLTKY----SVIM 169 (584)
Q Consensus 124 g~~vg~~~---~~~~---------------------~~-~~---~~~~I~~~T~~~ll~~l~~~~--~l~~~----~~iI 169 (584)
+..+|... .+.. .. .. --..|+|+|...++......+ .++.+ ++||
T Consensus 365 ~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvI 444 (878)
T PRK09694 365 ILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLI 444 (878)
T ss_pred EeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEE
Confidence 44444221 0000 00 00 126899999988886554432 13333 5899
Q ss_pred EeCCCcCccchh-HHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCccc---ccC---CCCCCeEEEECC
Q 007931 170 VDEAHERSISTD-ILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGV---ELV---PRLEPAILSVEG 242 (584)
Q Consensus 170 iDE~Her~~~~d-~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~ 242 (584)
|||+|.....+. ++..+++.+.. ...++|+||||++...-.+++............ +.. .......+.+..
T Consensus 445 iDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~ 522 (878)
T PRK09694 445 VDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSA 522 (878)
T ss_pred EechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccc
Confidence 999996554433 33444444333 356799999999765444433321100000000 000 000000111110
Q ss_pred ------ccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEec
Q 007931 243 ------RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY 316 (584)
Q Consensus 243 ------~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh 316 (584)
....+.+...........+..+..+.... ..++++||||||++.++++++.|++.. .....+..+|
T Consensus 523 ~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~------~~~~~v~llH 594 (878)
T PRK09694 523 HPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELN------NTQVDIDLFH 594 (878)
T ss_pred cccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhC------CCCceEEEEe
Confidence 11112221111100011122233333222 356789999999999999999998652 1246799999
Q ss_pred CCCCHHHHh----cccCCC-CCCC---cEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHH
Q 007931 317 SGLSRAEQE----QVFSPT-PRGK---RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASAR 388 (584)
Q Consensus 317 ~~l~~~~r~----~i~~~~-~~g~---~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~ 388 (584)
|+++..+|. ++++.| ++|+ .+|||||+++|.||||+ ++++|.. ..+.++++
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItd--------------------laPidsLi 653 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQ--------------------LCPVDLLF 653 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEEC--------------------CCCHHHHH
Confidence 999999994 456667 5665 47999999999999995 6887743 23467999
Q ss_pred HhccccCCC
Q 007931 389 QRAGRAGRV 397 (584)
Q Consensus 389 QR~GRaGR~ 397 (584)
||+||+||.
T Consensus 654 QRaGR~~R~ 662 (878)
T PRK09694 654 QRLGRLHRH 662 (878)
T ss_pred HHHhccCCC
Confidence 999999998
No 93
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=3.6e-24 Score=230.39 Aligned_cols=326 Identities=20% Similarity=0.205 Sum_probs=200.1
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCc
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVK 122 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~ 122 (584)
+.+-...+.-+++..+.-++..|..++||+||| +.+|.++... .+.++.+++|++.||.+ .....+.+.+|..
T Consensus 51 R~lg~~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~l~aL---~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLs 127 (745)
T TIGR00963 51 RVLGMRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLS 127 (745)
T ss_pred HHhCCCccchHHhhhhhhcCCceeeecCCCccHHHHHHHHHHHHH---hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCe
Confidence 444444444444444444444599999999999 4445443322 24468899999999988 4455677788888
Q ss_pred ceeEEeeEeeccCcCCCCCceEEEechHHH-HHHHccC-------CCCCCCcEEEEeCCCcCccch--------------
Q 007931 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIST-------------- 180 (584)
Q Consensus 123 vg~~vg~~~~~~~~~~~~~~~I~~~T~~~l-l~~l~~~-------~~l~~~~~iIiDE~Her~~~~-------------- 180 (584)
++..+|.....+..... .++|+|+|++.| ++.+..+ ..++++.++||||+|.-.++.
T Consensus 128 v~~i~g~~~~~~r~~~y-~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~ 206 (745)
T TIGR00963 128 VGLILSGMSPEERREAY-ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKS 206 (745)
T ss_pred EEEEeCCCCHHHHHHhc-CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCc
Confidence 88777743333323333 589999999999 7776554 137899999999999322210
Q ss_pred -hHHHHHHHHHHHhc--------CCceEEEEecccChHHHHHHhhcCCC--------------------------CCCC-
Q 007931 181 -DILLGLLKKIQRCR--------SDLRLIISSATIEAKSMSAFFHARKG--------------------------RRGL- 224 (584)
Q Consensus 181 -d~l~~~l~~~~~~~--------~~~~vi~~SAT~~~~~~~~~~~~~~~--------------------------~~~~- 224 (584)
......-.....+. .+-|.+.++.- ..+...++|+.... .+..
T Consensus 207 ~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~-G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 285 (745)
T TIGR00963 207 TELYLQANRFAKALEKEVHYEVDEKNRAVLLTEK-GIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVR 285 (745)
T ss_pred hHHHHHHHHHHHhhccCCCeEEecCCCceeECHH-HHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 11111111111111 11222333321 11222233221100 0000
Q ss_pred ------------cc-------------------cccC-CC-----------------------------------CCCeE
Q 007931 225 ------------EG-------------------VELV-PR-----------------------------------LEPAI 237 (584)
Q Consensus 225 ------------~~-------------------~~~~-~~-----------------------------------~~~~~ 237 (584)
+. ++.. .. -...+
T Consensus 286 d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~v 365 (745)
T TIGR00963 286 DGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEV 365 (745)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCE
Confidence 00 0000 00 00112
Q ss_pred EEECCccccceEEecCC----CcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEE
Q 007931 238 LSVEGRGFNVQIHYVEE----PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL 313 (584)
Q Consensus 238 ~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~ 313 (584)
+.+|... |+.....+. ...+...+.+..+...+. .+.++||||++.+.++.+++.|.+. ++...
T Consensus 366 v~IPtnk-p~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~--~grpvLV~t~si~~se~ls~~L~~~---------gi~~~ 433 (745)
T TIGR00963 366 VVVPTNR-PVIRKDLSDLVYKTEEEKWKAVVDEIKERHA--KGQPVLVGTTSVEKSELLSNLLKER---------GIPHN 433 (745)
T ss_pred EEeCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeE
Confidence 2222211 111111111 012233445555555553 4677999999999999999999886 78888
Q ss_pred EecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCC-------eEEEEecCCccceeecCCCCcccceeeeccHHh
Q 007931 314 PLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG-------IVYVVDSGFSKQRFYNPISDIENLVVAPISKAS 386 (584)
Q Consensus 314 ~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~-------v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~ 386 (584)
.+|+. +.+|...+..++.+...|+||||+|++|+||+. ..+||.+.+ |-|...
T Consensus 434 ~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~------------------p~s~ri 493 (745)
T TIGR00963 434 VLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER------------------HESRRI 493 (745)
T ss_pred EeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCC------------------CCcHHH
Confidence 99999 678888888899999999999999999999998 559999877 889999
Q ss_pred HHHhccccCCC-CCcEEEEccChH
Q 007931 387 ARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 387 ~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
+.||.||+||. .+|.+..+++.+
T Consensus 494 ~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 494 DNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred HHHHhccccCCCCCcceEEEEecc
Confidence 99999999999 889988877754
No 94
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=5.5e-24 Score=245.17 Aligned_cols=279 Identities=20% Similarity=0.184 Sum_probs=175.7
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHH-HHHHHHhcCccCCCeEEEEeCchHHHHHH--HHHHHHHHhCCcc
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQA--VASRVAEEMGVKV 123 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~-ip~~l~~~~~~~~~~~I~v~~~r~la~~~--~~~~~~~~~~~~v 123 (584)
.....+..|...+..+..+++++++||||||||+. +|...... ..+.++++++|+|+|+.|. ..+.++...+...
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~--~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLA--KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 44567778888888888999999999999999953 33322211 2356789999999999873 3344555555443
Q ss_pred e---eEEeeEeecc-----CcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccc-----------hhH--
Q 007931 124 G---EEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS-----------TDI-- 182 (584)
Q Consensus 124 g---~~vg~~~~~~-----~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~-----------~d~-- 182 (584)
. ..+|.....+ ........+|+|+||+.|.+.+..-. .+++++|+||||. .+. .+|
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~-~L~~~k~vd~il~llGF~~ 229 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDA-LLKASKNVDKLLKLLGFSE 229 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHh-hhhccccHHHHHHHcCCCH
Confidence 2 2233211111 01112258999999999988765421 2899999999993 222 111
Q ss_pred --HHHHHHH-------------------HHHhcCCce--EEEEecccChHHHH-HHhhcCCCCCCCcccccCCCCCCeEE
Q 007931 183 --LLGLLKK-------------------IQRCRSDLR--LIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEPAIL 238 (584)
Q Consensus 183 --l~~~l~~-------------------~~~~~~~~~--vi~~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (584)
+...+.. +.....+.| ++++|||..+.... .+|.... .+
T Consensus 230 e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-----------------~~ 292 (1171)
T TIGR01054 230 ELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELL-----------------GF 292 (1171)
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHccccc-----------------ce
Confidence 1111110 111122333 67789995322222 2332211 12
Q ss_pred EECCc---cccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcH---HHHHHHHHHHHHHhhhccCCCCCeEE
Q 007931 239 SVEGR---GFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQ---DDIDATIQLLTEEARTSKKNSSGLII 312 (584)
Q Consensus 239 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~---~~i~~l~~~L~~~~~~~~~~~~~~~v 312 (584)
.+... ..++...|..... ...... .+.... +++.||||+++ +.++++++.|.+. ++.+
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~--~~~~L~----~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g~~a 356 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED--LKETLL----EIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH---------GVKA 356 (1171)
T ss_pred EecCccccccceEEEEEeccc--HHHHHH----HHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC---------CceE
Confidence 22111 1234444443221 112222 222222 35689999999 9999999999775 8899
Q ss_pred EEecCCCCHHHHhcccCCCCCCCcEEEEe----CCCCccccccCC-eEEEEecCCcccee
Q 007931 313 LPLYSGLSRAEQEQVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSKQRF 367 (584)
Q Consensus 313 ~~lh~~l~~~~r~~i~~~~~~g~~~vlva----T~i~e~Gidip~-v~~VId~g~~k~~~ 367 (584)
..+||+++. .+++.|++|+.+|||| |+++++|||+|+ |+|||++|..+.++
T Consensus 357 ~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 357 VAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred EEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 999999973 5789999999999999 599999999999 89999999987654
No 95
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.91 E-value=3.2e-23 Score=218.63 Aligned_cols=308 Identities=16% Similarity=0.163 Sum_probs=193.9
Q ss_pred HhcCCCchHHHHHHHHHHhc----CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 007931 45 QRQRLPVYKYRTAILYLVET----HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (584)
Q Consensus 45 ~~~~lP~~~~~~~il~~l~~----~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~ 120 (584)
......++.+|++.++++.. ++..+++.|||+|||.+....+.... ..+++++|.+.|+.|.. ++..+..+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----~~~Lvlv~~~~L~~Qw~-~~~~~~~~ 105 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----RSTLVLVPTKELLDQWA-EALKKFLL 105 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc----CCEEEEECcHHHHHHHH-HHHHHhcC
Confidence 34556688999999999988 88899999999999977776665542 23788898888887654 66666665
Q ss_pred Cc--ceeEEeeEeeccCcCCCCCceEEEechHHHHHHH-ccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCc
Q 007931 121 VK--VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM-MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL 197 (584)
Q Consensus 121 ~~--vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l-~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~ 197 (584)
.. +|...|..... . ...|+|+|.+.+.+.- ......+++++||+||||..+.. ....+.. .....
T Consensus 106 ~~~~~g~~~~~~~~~-----~-~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~--~~~~~~~----~~~~~ 173 (442)
T COG1061 106 LNDEIGIYGGGEKEL-----E-PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP--SYRRILE----LLSAA 173 (442)
T ss_pred CccccceecCceecc-----C-CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH--HHHHHHH----hhhcc
Confidence 53 34333322211 1 1479999999998862 23333457999999999943322 2222222 22334
Q ss_pred e-EEEEeccc---ChHHHHHHhhcC---CCCCCCcccccCCCCCCe-EEEECCc-cccceEEecCCCcch----------
Q 007931 198 R-LIISSATI---EAKSMSAFFHAR---KGRRGLEGVELVPRLEPA-ILSVEGR-GFNVQIHYVEEPVSD---------- 258 (584)
Q Consensus 198 ~-vi~~SAT~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~---------- 258 (584)
. ++++|||+ |......++... .....+..........+. ...+... .......|.......
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 253 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTL 253 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhh
Confidence 4 99999997 322333333222 111111111111111111 1111110 000000010000000
Q ss_pred -----------HHHHHHHHHHHHHhcC-CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhc
Q 007931 259 -----------YVQAAVSTVLLIHDKE-PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (584)
Q Consensus 259 -----------~~~~~~~~i~~~~~~~-~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (584)
..+.....+..+.... .+.+++||+....+++.++..+... +. +..+.+..+..+|..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~---------~~-~~~it~~t~~~eR~~ 323 (442)
T COG1061 254 RAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP---------GI-VEAITGETPKEEREA 323 (442)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC---------Cc-eEEEECCCCHHHHHH
Confidence 0011111222222222 4568999999999999999888542 44 889999999999999
Q ss_pred ccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC
Q 007931 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV 397 (584)
Q Consensus 327 i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 397 (584)
+++.|+.|.+++|+++.++.+|+|+|+++++|...- .-|+..|.||+||.-|.
T Consensus 324 il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~------------------t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 324 ILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP------------------TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC------------------CCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999996432 56899999999999996
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=5.4e-23 Score=235.34 Aligned_cols=333 Identities=20% Similarity=0.273 Sum_probs=193.9
Q ss_pred CchHHHHHHHHHHh-----cCCEEEEEcCCCChHHHHHHHHHHhcC-ccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcc
Q 007931 50 PVYKYRTAILYLVE-----THATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (584)
Q Consensus 50 P~~~~~~~il~~l~-----~~~~viv~a~TGsGKT~~ip~~l~~~~-~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~v 123 (584)
....+|.+.+.++. +++..+|+++||||||..+..++.... ....++++++++.+.|..|.... +.. .+...
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~-F~~-~~~~~ 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDA-FKD-TKIEG 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHH-HHh-ccccc
Confidence 45678877776553 246789999999999954433332211 11235788889888888775443 222 22111
Q ss_pred eeEE-e-eEee-ccCcCCCCCceEEEechHHHHHHHccC------CCCCCCcEEEEeCCCcCccchhH------------
Q 007931 124 GEEV-G-YTIR-FEDFTNKDLTAIKFLTDGVLLREMMDD------PLLTKYSVIMVDEAHERSISTDI------------ 182 (584)
Q Consensus 124 g~~v-g-~~~~-~~~~~~~~~~~I~~~T~~~ll~~l~~~------~~l~~~~~iIiDE~Her~~~~d~------------ 182 (584)
+... + +.+. ..........+|+|+|.+.+.+.+... ..+..+++||||||| |+...|-
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 1000 0 1111 111111226899999999998775321 247889999999999 7642110
Q ss_pred --HHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCC----CCeEEEE----CCccccc----e
Q 007931 183 --LLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRL----EPAILSV----EGRGFNV----Q 248 (584)
Q Consensus 183 --l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~v----~ 248 (584)
...-.+.+.... +..+|++||||... -.++|+......+.......... .+..+.. .|-.+.. +
T Consensus 570 ~~~~~~yr~iL~yF-dA~~IGLTATP~r~-t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~ 647 (1123)
T PRK11448 570 LDYVSKYRRVLDYF-DAVKIGLTATPALH-TTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVE 647 (1123)
T ss_pred hhHHHHHHHHHhhc-CccEEEEecCCccc-hhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhh
Confidence 012233444433 46789999999533 35677643222222111111111 1111111 0000000 0
Q ss_pred --------E--EecCC----Ccch---------HHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccC
Q 007931 249 --------I--HYVEE----PVSD---------YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK 305 (584)
Q Consensus 249 --------~--~~~~~----~~~~---------~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~ 305 (584)
+ ...+. ...+ ..+.++..+........++++||||.++++++.+++.|.+.+.....
T Consensus 648 ~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~ 727 (1123)
T PRK11448 648 VINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYG 727 (1123)
T ss_pred hcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 0 00000 0000 11122223333223334589999999999999999999876543211
Q ss_pred CCCCeEEEEecCCCCHHHHhcccCCCCCCCc-EEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccH
Q 007931 306 NSSGLIILPLYSGLSRAEQEQVFSPTPRGKR-KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISK 384 (584)
Q Consensus 306 ~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~-~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~ 384 (584)
......+..+||+.+ ++.++++.|+++.. +|+|+++++.+|+|+|.|.+||.... +.|.
T Consensus 728 ~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp------------------vkS~ 787 (1123)
T PRK11448 728 QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRR------------------VRSR 787 (1123)
T ss_pred CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecC------------------CCCH
Confidence 222345667888875 45678999998876 79999999999999999999997544 6789
Q ss_pred HhHHHhccccCCCCC--cE-EEEccC
Q 007931 385 ASARQRAGRAGRVRP--GK-CYRLYT 407 (584)
Q Consensus 385 ~~~~QR~GRaGR~~~--G~-~~~l~~ 407 (584)
..|+||+||+.|..+ |+ .+.+++
T Consensus 788 ~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 788 ILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHHHHHHhhhccCCccCCCceEEEEe
Confidence 999999999999966 44 455555
No 97
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=1.5e-23 Score=219.40 Aligned_cols=313 Identities=15% Similarity=0.170 Sum_probs=211.1
Q ss_pred HHHHhcCCC--chHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHH-
Q 007931 42 IEKQRQRLP--VYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVA- 112 (584)
Q Consensus 42 l~~~~~~lP--~~~~~~~il~~l~~~------~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~- 112 (584)
+.+....|| +...|+.++..|..+ -+=+++|.-|||||..+...++. ....+.++.+.+|+--||.|...
T Consensus 252 ~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~-ai~~G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 252 LAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLA-AIEAGYQAALMAPTEILAEQHYES 330 (677)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHH-HHHcCCeeEEeccHHHHHHHHHHH
Confidence 334445555 556666666666432 24589999999999555444443 34566677888887766666332
Q ss_pred -HHHHHHhCCcceeEEeeEeecc------CcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHH
Q 007931 113 -SRVAEEMGVKVGEEVGYTIRFE------DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLG 185 (584)
Q Consensus 113 -~~~~~~~~~~vg~~vg~~~~~~------~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~ 185 (584)
......+|+.++-.+|...... ...+. ..+|+|+|..-+ +.+..+.++.++||||=|..++....
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G-~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQHRFGV~QR~--- 402 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASG-EIDIVVGTHALI----QDKVEFHNLGLVIIDEQHRFGVHQRL--- 402 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCC-CCCEEEEcchhh----hcceeecceeEEEEeccccccHHHHH---
Confidence 2344556788888887433221 22233 799999998643 33445999999999999965553321
Q ss_pred HHHHHHHhcC-CceEEEEecccChHHHH-HHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHH
Q 007931 186 LLKKIQRCRS-DLRLIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAA 263 (584)
Q Consensus 186 ~l~~~~~~~~-~~~vi~~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 263 (584)
.+..+.. .+.++.||||+=+..++ ..|+.-.+. .+-..|....|+..........+ ..
T Consensus 403 ---~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS--------------~IdElP~GRkpI~T~~i~~~~~~---~v 462 (677)
T COG1200 403 ---ALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVS--------------IIDELPPGRKPITTVVIPHERRP---EV 462 (677)
T ss_pred ---HHHHhCCCCCcEEEEeCCCchHHHHHHHhccccch--------------hhccCCCCCCceEEEEeccccHH---HH
Confidence 2233444 57899999999666655 345543311 02334444457777666653322 23
Q ss_pred HHHHHHHHhcCCCCCEEEEeCcHHHH--------HHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCC
Q 007931 264 VSTVLLIHDKEPPGDILVFLTGQDDI--------DATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (584)
Q Consensus 264 ~~~i~~~~~~~~~~~iLVF~~~~~~i--------~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~ 335 (584)
++.+..-. ..+.++.|-||-.++- +.+++.|+.. .+++.|..+||.|+.+|+++|++.|++|+
T Consensus 463 ~e~i~~ei--~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~-------~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e 533 (677)
T COG1200 463 YERIREEI--AKGRQAYVVCPLIEESEKLELQAAEELYEELKSF-------LPELKVGLVHGRMKPAEKDAVMEAFKEGE 533 (677)
T ss_pred HHHHHHHH--HcCCEEEEEeccccccccchhhhHHHHHHHHHHH-------cccceeEEEecCCChHHHHHHHHHHHcCC
Confidence 33333333 3577899999976654 4555555543 35888999999999999999999999999
Q ss_pred cEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 336 ~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
.+|||||.+.|.|||+|+.++.|- +|+. ...-++..|-.||+||. .++.|+.+|.+.
T Consensus 534 ~~ILVaTTVIEVGVdVPnATvMVI--------e~AE---------RFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 534 IDILVATTVIEVGVDVPNATVMVI--------ENAE---------RFGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred CcEEEEeeEEEecccCCCCeEEEE--------echh---------hhhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 999999999999999999999774 3333 23456666999999999 789999999754
No 98
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.91 E-value=5.6e-23 Score=197.94 Aligned_cols=331 Identities=14% Similarity=0.165 Sum_probs=221.1
Q ss_pred cccCCCCCCccchhhHHHHhcCC-CchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCc
Q 007931 27 SSLSSASSIGYGYASIEKQRQRL-PVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~l-P~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
|.-+++|.|+.. ..+++.-..| ...+.|.+.+.+...+..+++..|||.||| +|+|.++.+ +-.+++.|.
T Consensus 71 wdkd~fpws~e~-~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad------g~alvi~pl 143 (695)
T KOG0353|consen 71 WDKDDFPWSDEA-KDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD------GFALVICPL 143 (695)
T ss_pred cccCCCCCchHH-HHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC------CceEeechh
Confidence 456678888764 3444433333 234567778888888999999999999999 899977643 346888898
Q ss_pred hHHHHHHHHHHHHHHhCCcceeEEeeEee-----ccCc-C-CCCCceEEEechHHHHHH------HccCCCCCCCcEEEE
Q 007931 104 RRLAVQAVASRVAEEMGVKVGEEVGYTIR-----FEDF-T-NKDLTAIKFLTDGVLLRE------MMDDPLLTKYSVIMV 170 (584)
Q Consensus 104 r~la~~~~~~~~~~~~~~~vg~~vg~~~~-----~~~~-~-~~~~~~I~~~T~~~ll~~------l~~~~~l~~~~~iIi 170 (584)
..|...++.. .+.+|+........+.. .+.. . ....-+++|.||+.+... +...-....+.+|-|
T Consensus 144 islmedqil~--lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iai 221 (695)
T KOG0353|consen 144 ISLMEDQILQ--LKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAI 221 (695)
T ss_pred HHHHHHHHHH--HHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEee
Confidence 8888777665 45555544322221111 1110 1 112578999999987542 222223667899999
Q ss_pred eCCCcCc-cchhH--HHHHHHHHHHhcCCceEEEEecccCh---HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc
Q 007931 171 DEAHERS-ISTDI--LLGLLKKIQRCRSDLRLIISSATIEA---KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG 244 (584)
Q Consensus 171 DE~Her~-~~~d~--l~~~l~~~~~~~~~~~vi~~SAT~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (584)
||+|.-+ ...|| -...+..+.+..++..+|+++||... ++..+.++..... ..+. -+.-+.-.
T Consensus 222 devhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~-tf~a----------~fnr~nl~ 290 (695)
T KOG0353|consen 222 DEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAF-TFRA----------GFNRPNLK 290 (695)
T ss_pred cceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhh-eeec----------ccCCCCce
Confidence 9999433 11122 12334445567889999999999833 2233333321100 0000 00011111
Q ss_pred ccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHH
Q 007931 245 FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQ 324 (584)
Q Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 324 (584)
| ++...+....+..+.+...+ ...-.+..-+|||-++++++.++..|+.+ ++....+|+.|.++++
T Consensus 291 y--ev~qkp~n~dd~~edi~k~i---~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep~dk 356 (695)
T KOG0353|consen 291 Y--EVRQKPGNEDDCIEDIAKLI---KGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEPEDK 356 (695)
T ss_pred e--EeeeCCCChHHHHHHHHHHh---ccccCCCcceEEEeccccHHHHHHHHHhc---------CccccccccccCcccc
Confidence 2 22223333444444433332 22334455799999999999999999887 8999999999999999
Q ss_pred hcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHH---------------
Q 007931 325 EQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQ--------------- 389 (584)
Q Consensus 325 ~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~Q--------------- 389 (584)
.-+-+.+-.|++.|||||-..++|||-|+|++||+-.+ |-|..+|.|
T Consensus 357 s~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl------------------~ksienyyqasarillrmtkqknk 418 (695)
T KOG0353|consen 357 SGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSL------------------PKSIENYYQASARILLRMTKQKNK 418 (695)
T ss_pred ccccccccccceEEEEEEeeecccCCCCCeeEEEeccc------------------chhHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999877 778888888
Q ss_pred ----------------------------hccccCCC-CCcEEEEccChH
Q 007931 390 ----------------------------RAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 390 ----------------------------R~GRaGR~-~~G~~~~l~~~~ 409 (584)
..|||||. .+..|+..|.-.
T Consensus 419 sdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 419 SDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred ccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 78999999 788888887643
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.89 E-value=6.2e-22 Score=218.41 Aligned_cols=288 Identities=18% Similarity=0.197 Sum_probs=205.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCc--ceeEEeeEeeccCc-----CCC
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK--VGEEVGYTIRFEDF-----TNK 139 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~--vg~~vg~~~~~~~~-----~~~ 139 (584)
+=+|||.-|-|||-.+-...... ...++++.+++|+.-||.|.......+.-|.. ++...-+....+.. ...
T Consensus 617 DRLiCGDVGFGKTEVAmRAAFkA-V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~ 695 (1139)
T COG1197 617 DRLICGDVGFGKTEVAMRAAFKA-VMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAE 695 (1139)
T ss_pred hheeecCcCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhc
Confidence 46999999999997766655544 34567788888888777765444333333433 33222222221111 112
Q ss_pred CCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCC
Q 007931 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (584)
Q Consensus 140 ~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~ 219 (584)
+..+|+|+|...| ..+..+.+++++||||-|..++... .++...+.++-++-||||+=+..+.--+.+..
T Consensus 696 G~vDIvIGTHrLL----~kdv~FkdLGLlIIDEEqRFGVk~K------EkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiR 765 (1139)
T COG1197 696 GKVDIVIGTHRLL----SKDVKFKDLGLLIIDEEQRFGVKHK------EKLKELRANVDVLTLSATPIPRTLNMSLSGIR 765 (1139)
T ss_pred CCccEEEechHhh----CCCcEEecCCeEEEechhhcCccHH------HHHHHHhccCcEEEeeCCCCcchHHHHHhcch
Confidence 3789999998543 3455599999999999997666432 33444667899999999996655554333322
Q ss_pred CCCCCcccccCCCCCCeEEE-ECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHH
Q 007931 220 GRRGLEGVELVPRLEPAILS-VEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTE 298 (584)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~ 298 (584)
+..++. .|...+||+.+..+....-..++....+ ..+|++-.-.|..++++++++.|++
T Consensus 766 --------------dlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl------~RgGQvfYv~NrV~~Ie~~~~~L~~ 825 (1139)
T COG1197 766 --------------DLSVIATPPEDRLPVKTFVSEYDDLLIREAILREL------LRGGQVFYVHNRVESIEKKAERLRE 825 (1139)
T ss_pred --------------hhhhccCCCCCCcceEEEEecCChHHHHHHHHHHH------hcCCEEEEEecchhhHHHHHHHHHH
Confidence 111232 3456678887776654433222222222 4688999999999999999999998
Q ss_pred HhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccce
Q 007931 299 EARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLV 378 (584)
Q Consensus 299 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~ 378 (584)
.. |..+|...||.|+..+-++++..|-+|..+|||||.|.|+|||||+.+.+|--.. .
T Consensus 826 LV-------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A--------D------- 883 (1139)
T COG1197 826 LV-------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA--------D------- 883 (1139)
T ss_pred hC-------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc--------c-------
Confidence 75 6889999999999999999999999999999999999999999999999874211 1
Q ss_pred eeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 379 VAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 379 ~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
-..-++..|-.||+||. ..|.||.+|.+.
T Consensus 884 --~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 884 --KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred --cccHHHHHHhccccCCccceEEEEEeecCc
Confidence 23456777999999999 889999999864
No 100
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.3e-21 Score=179.39 Aligned_cols=305 Identities=19% Similarity=0.174 Sum_probs=204.5
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc--CccCCCeEEEEeCc
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA--GWADGGRVIACTQP 103 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~--~~~~~~~~I~v~~~ 103 (584)
++-|.|+=+.+...+++..-...-|..-+++-|.+++..-+ ++.+|..|-|||......-+.. .....-.++++..+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmcht 119 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHT 119 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCCCCeEEEEEEecc
Confidence 34488888888888888888889999999999999998665 8999999999993322222222 11122345888999
Q ss_pred hHHHHH--HHHHHHHHHhC-CcceeEEe-eEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCcc
Q 007931 104 RRLAVQ--AVASRVAEEMG-VKVGEEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (584)
Q Consensus 104 r~la~~--~~~~~~~~~~~-~~vg~~vg-~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (584)
|+||-| .-..|+++.+. .++....| ..+..+.......++|+++|||+++...++..+ ++++.++|+|||+...-
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH
Confidence 999987 44556777764 55655555 444433333233789999999999999888777 99999999999994333
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC----ccccceEEec
Q 007931 179 STDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG----RGFNVQIHYV 252 (584)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~ 252 (584)
..|....+-...+....+-|+..+|||+ +..-+..-|...|.. +.++. ..+....+|.
T Consensus 200 ~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmE----------------i~vDdE~KLtLHGLqQ~Yv 263 (387)
T KOG0329|consen 200 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPME----------------IFVDDEAKLTLHGLQQYYV 263 (387)
T ss_pred HHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchh----------------hhccchhhhhhhhHHHHHH
Confidence 3344444444444456778899999999 444455555444311 11111 1123333443
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCC
Q 007931 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (584)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~ 332 (584)
.....+...... ++.....-.+++||+.+...+ + |
T Consensus 264 kLke~eKNrkl~----dLLd~LeFNQVvIFvKsv~Rl------------------------------~----------f- 298 (387)
T KOG0329|consen 264 KLKENEKNRKLN----DLLDVLEFNQVVIFVKSVQRL------------------------------S----------F- 298 (387)
T ss_pred hhhhhhhhhhhh----hhhhhhhhcceeEeeehhhhh------------------------------h----------h-
Confidence 332222212111 222222345688888765431 0 2
Q ss_pred CCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHH
Q 007931 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (584)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (584)
.++ +|||++..+|+||..|+.|+++++ |-+..+|.||.|||||. ..|.++.+.+.+.-
T Consensus 299 -~kr--~vat~lfgrgmdiervNi~~NYdm------------------p~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 299 -QKR--LVATDLFGRGMDIERVNIVFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred -hhh--hHHhhhhccccCcccceeeeccCC------------------CCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 123 899999999999999999999988 88899999999999999 78999998886544
Q ss_pred hh
Q 007931 412 VK 413 (584)
Q Consensus 412 ~~ 413 (584)
..
T Consensus 358 a~ 359 (387)
T KOG0329|consen 358 AK 359 (387)
T ss_pred HH
Confidence 33
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=3.9e-20 Score=207.49 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=100.5
Q ss_pred HHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC--CcEEEEeCC
Q 007931 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--KRKVVISTN 343 (584)
Q Consensus 266 ~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g--~~~vlvaT~ 343 (584)
.+..+.......++||||.++..+..+.+.|.+.. ++.+..+||+|+..+|.++++.|+++ ..+|+|||+
T Consensus 483 ~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~--------Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 483 WLIDFLKSHRSEKVLVICAKAATALQLEQALRERE--------GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred HHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc--------CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 34444445557789999999999999999996432 78999999999999999999999874 699999999
Q ss_pred CCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCc--EEEEccChH
Q 007931 344 IAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPG--KCYRLYTEE 409 (584)
Q Consensus 344 i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G--~~~~l~~~~ 409 (584)
++++|+|++.+++||++++ |.++..|.||+||+||. +.| .+|.++.+.
T Consensus 555 vgseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred hhccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 9999999999999999988 99999999999999998 444 456666644
No 102
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.1e-19 Score=198.73 Aligned_cols=289 Identities=18% Similarity=0.157 Sum_probs=174.8
Q ss_pred HhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhC
Q 007931 45 QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMG 120 (584)
Q Consensus 45 ~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~ 120 (584)
.++.|-...+--+++-++.=++--|..++||+||| +.+|.++.. . .+..+.++||++.||.+ .....+.+.+|
T Consensus 75 ~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~a--l-~G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 75 SLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNA--I-SGRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred HHHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHH--h-cCCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 34566666666667776666666789999999999 445555432 2 34458899999999988 44555677778
Q ss_pred CcceeEEeeEeeccCcCCCCCceEEEechHHH-HHHHccCCC-------CCCCcEEEEeCCCc------Cc---------
Q 007931 121 VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDPL-------LTKYSVIMVDEAHE------RS--------- 177 (584)
Q Consensus 121 ~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~l-l~~l~~~~~-------l~~~~~iIiDE~He------r~--------- 177 (584)
..++..+|.....+..... .++|+|+||+.| ++.+..+.. .+.+.++||||||. |+
T Consensus 152 Ltv~~i~gg~~~~~r~~~y-~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~ 230 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAY-KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAE 230 (896)
T ss_pred ceEEEEeCCCCHHHHHHHh-CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCc
Confidence 8888777643222222223 689999999999 877766532 26899999999992 11
Q ss_pred cchhHHHHHHHHHHHhcC--------------CceEEEEecccChHHHHHHhhcCCC----CCCCc--------------
Q 007931 178 ISTDILLGLLKKIQRCRS--------------DLRLIISSATIEAKSMSAFFHARKG----RRGLE-------------- 225 (584)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~--------------~~~vi~~SAT~~~~~~~~~~~~~~~----~~~~~-------------- 225 (584)
...+........+..... +-+-|.+|-.- ...+.++|..... ...+.
T Consensus 231 ~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G-~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 231 DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAG-HLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHH-HHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 111222222222221111 12334444321 1223333311000 00000
Q ss_pred ---------------c-------------c----------------ccC----CCC------------------------
Q 007931 226 ---------------G-------------V----------------ELV----PRL------------------------ 233 (584)
Q Consensus 226 ---------------~-------------~----------------~~~----~~~------------------------ 233 (584)
. + +.. ...
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 0 0 000 000
Q ss_pred -----------CCeEEEECCccccceEEecCC----CcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHH
Q 007931 234 -----------EPAILSVEGRGFNVQIHYVEE----PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTE 298 (584)
Q Consensus 234 -----------~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~ 298 (584)
...++.+|... |+...-.++ ...+...+++..+...+. .+.++||||++.+..+.+++.|.+
T Consensus 390 ~te~~Ef~~iY~l~Vv~IPtnk-p~~R~d~~d~v~~t~~~k~~av~~~i~~~~~--~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 390 DTEAYEFQQIYNLEVVVIPTNR-SMIRKDEADLVYLTQADKFQAIIEDVRECGV--RKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred hhHHHHHHHHhCCCEEECCCCC-CcceecCCCeEEcCHHHHHHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHH
Confidence 01122222211 111110000 112334455566666554 467799999999999999999988
Q ss_pred HhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccC
Q 007931 299 EARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (584)
Q Consensus 299 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip 352 (584)
. ++....+|+.+.+.++..+.+++++|. |+||||+|++|+||.
T Consensus 467 ~---------gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~ 509 (896)
T PRK13104 467 E---------NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIV 509 (896)
T ss_pred c---------CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCccee
Confidence 6 889999999999999999999999995 999999999999986
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.3e-19 Score=197.08 Aligned_cols=118 Identities=25% Similarity=0.293 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEE
Q 007931 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (584)
Q Consensus 261 ~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlv 340 (584)
...+..+...+ ..+.++||||++...++.+++.|.+. ++....+|+.+...|+..+.++++.|. |+|
T Consensus 427 ~al~~~i~~~~--~~g~pvLI~t~si~~se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtI 493 (796)
T PRK12906 427 NAVVKEIKERH--AKGQPVLVGTVAIESSERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTI 493 (796)
T ss_pred HHHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce--EEE
Confidence 34444444444 35678999999999999999999886 788899999999988889988888777 999
Q ss_pred eCCCCcccccc---CCeE-----EEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 341 STNIAETSLTL---EGIV-----YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 341 aT~i~e~Gidi---p~v~-----~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
|||+|++|.|| ++|. +||.+.+ |-|...+.||.||+||. .||.+..+++-+
T Consensus 494 ATnmAGRGtDI~l~~~V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 494 ATNMAGRGTDIKLGPGVKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred EeccccCCCCCCCCcchhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 99999999999 4899 9999877 88999999999999999 899988877754
No 104
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=4.7e-19 Score=193.53 Aligned_cols=343 Identities=16% Similarity=0.141 Sum_probs=190.7
Q ss_pred hcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCC
Q 007931 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGV 121 (584)
Q Consensus 46 ~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~ 121 (584)
++.+-...+--+++-++.=++--|..+.||+||| ..+|.++... .+..+-++||+..||.+ +....+.+.+|.
T Consensus 75 ~R~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL---~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 75 KRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred HHHhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHH---cCCCEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 3444444444456655544444688999999999 3344443322 23446688999999987 445567778889
Q ss_pred cceeEEeeEeeccCcCCCCCceEEEechHHH-HHHHccCC-------CCCCCcEEEEeCCCc------Cc---------c
Q 007931 122 KVGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDP-------LLTKYSVIMVDEAHE------RS---------I 178 (584)
Q Consensus 122 ~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~l-l~~l~~~~-------~l~~~~~iIiDE~He------r~---------~ 178 (584)
.+|..+|.....+....- .++|+|+|++.| ++.+..+. .++.+.+.|||||+. |. .
T Consensus 152 sv~~i~~~~~~~er~~~y-~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~ 230 (830)
T PRK12904 152 SVGVILSGMSPEERREAY-AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAED 230 (830)
T ss_pred eEEEEcCCCCHHHHHHhc-CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCc
Confidence 888877743333332223 589999999999 77776543 267899999999992 11 0
Q ss_pred chhHHHHHHHHHHHhcC--------CceEEEEecccChHHHHHHhhcC--------------------------CCCCCC
Q 007931 179 STDILLGLLKKIQRCRS--------DLRLIISSATIEAKSMSAFFHAR--------------------------KGRRGL 224 (584)
Q Consensus 179 ~~d~l~~~l~~~~~~~~--------~~~vi~~SAT~~~~~~~~~~~~~--------------------------~~~~~~ 224 (584)
..+......+.+..... .-+.+.++.. ......++|+.. .+.+..
T Consensus 231 ~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~-G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 309 (830)
T PRK12904 231 SSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEE-GIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIV 309 (830)
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHH-HHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 11222222222222211 1233333331 111122222110 000000
Q ss_pred c-------------c-------------------cccC-CCC-----------------------------------CCe
Q 007931 225 E-------------G-------------------VELV-PRL-----------------------------------EPA 236 (584)
Q Consensus 225 ~-------------~-------------------~~~~-~~~-----------------------------------~~~ 236 (584)
. . ++.. ... ...
T Consensus 310 ~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~ 389 (830)
T PRK12904 310 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLD 389 (830)
T ss_pred ECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCC
Confidence 0 0 0000 000 011
Q ss_pred EEEECCccccceEEecCCC----cchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEE
Q 007931 237 ILSVEGRGFNVQIHYVEEP----VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLII 312 (584)
Q Consensus 237 ~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v 312 (584)
++.+|... |+...-.+.. ..+....++..+...+ ..+.++||||.+.+.++.+++.|.+. ++..
T Consensus 390 vv~IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~---------gi~~ 457 (830)
T PRK12904 390 VVVIPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKA---------GIPH 457 (830)
T ss_pred EEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC---------CCce
Confidence 22222211 1111111111 1123344444444444 34668999999999999999999876 7888
Q ss_pred EEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCe---EEEEecCCcc----------------ceeecCCCC
Q 007931 313 LPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI---VYVVDSGFSK----------------QRFYNPISD 373 (584)
Q Consensus 313 ~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v---~~VId~g~~k----------------~~~~d~~~~ 373 (584)
..+||. +.+|...+..|+.+...|+||||+|++|+||+== .+.+...+.. ...--...|
T Consensus 458 ~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 458 NVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred EeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 999996 6788888888999999999999999999999721 0000000000 000000122
Q ss_pred ccccee-eeccHHhHHHhccccCCC-CCcEEEEccC
Q 007931 374 IENLVV-APISKASARQRAGRAGRV-RPGKCYRLYT 407 (584)
Q Consensus 374 ~~~l~~-~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (584)
+..+.+ .+-|.--=.|-.|||||. .||.+-.+.+
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lS 571 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLS 571 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEE
Confidence 222222 255666667999999999 8897655555
No 105
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.82 E-value=1e-19 Score=178.32 Aligned_cols=289 Identities=20% Similarity=0.233 Sum_probs=184.5
Q ss_pred CeEEEEeCchHHHHHHHH--HHHHHHhC-Ccce--eEEe-eEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcE
Q 007931 95 GRVIACTQPRRLAVQAVA--SRVAEEMG-VKVG--EEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSV 167 (584)
Q Consensus 95 ~~~I~v~~~r~la~~~~~--~~~~~~~~-~~vg--~~vg-~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~ 167 (584)
...|++-|+|+++.|..- +.+..... -.+- ..+| ...+.+.....+.++|+++||+++++.+..... +....+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 457899999999987432 22222221 1111 1222 233333333445899999999999998877655 889999
Q ss_pred EEEeCCCcCc--cchhHHHHHHHHHHH---hcCCceEEEEeccc---ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEE
Q 007931 168 IMVDEAHERS--ISTDILLGLLKKIQR---CRSDLRLIISSATI---EAKSMSAFFHARKGRRGLEGVELVPRLEPAILS 239 (584)
Q Consensus 168 iIiDE~Her~--~~~d~l~~~l~~~~~---~~~~~~vi~~SAT~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (584)
+|+||++-.. .+.|+...+...+.. ....++.+++|||+ ++..+.+-...-|.-..+...+..+.....++.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 9999999321 345555555554443 33568899999998 444444433322221111111111111000100
Q ss_pred -----ECCccccc-----------eEEecCC-CcchHHHHHHHHH-----HHHHhcCCCCCEEEEeCcHHHHHHHHHHHH
Q 007931 240 -----VEGRGFNV-----------QIHYVEE-PVSDYVQAAVSTV-----LLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (584)
Q Consensus 240 -----~~~~~~~v-----------~~~~~~~-~~~~~~~~~~~~i-----~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~ 297 (584)
+.+..-.. +....+. ...+....+...+ +.........+.+|||.++.++..+.+++.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 00100000 0000000 0011111122111 111223344679999999999999999988
Q ss_pred HHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccc
Q 007931 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENL 377 (584)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l 377 (584)
+. +...+.+.++||+..+.||++-++.|+.+..+.++||+++++|+||.++-++|+.-+
T Consensus 527 qk------gg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtl--------------- 585 (725)
T KOG0349|consen 527 QK------GGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL--------------- 585 (725)
T ss_pred Hc------CCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec---------------
Confidence 76 335789999999999999999999999999999999999999999999999999766
Q ss_pred eeeeccHHhHHHhccccCCC-CCcEEEEccC
Q 007931 378 VVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (584)
Q Consensus 378 ~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (584)
|-.+.+|+||+||+||. +-|.++.|+.
T Consensus 586 ---pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 586 ---PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ---CcccchhhhhhhccchhhhcceeEEEee
Confidence 88899999999999999 7898888764
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.81 E-value=1e-18 Score=195.33 Aligned_cols=310 Identities=19% Similarity=0.161 Sum_probs=170.9
Q ss_pred CchHHHHHHHHHHhc---CC-EEEEEcCCCChHHHHHHHHHHhcCc---cCCCeEEEEeCchHHHHHHHHHHHHHHhCC-
Q 007931 50 PVYKYRTAILYLVET---HA-TTIIVGETGSGKTTQIPQYLKEAGW---ADGGRVIACTQPRRLAVQAVASRVAEEMGV- 121 (584)
Q Consensus 50 P~~~~~~~il~~l~~---~~-~viv~a~TGsGKT~~ip~~l~~~~~---~~~~~~I~v~~~r~la~~~~~~~~~~~~~~- 121 (584)
+.+..|..+++.+.. .. .+++.||||+|||+....+...... ....+.|++.|.+.+.. ...+++....+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie-~~~~r~~~~~~~~ 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIE-DMYRRAKEIFGLF 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHH-HHHHHHHhhhccc
Confidence 445566666665543 34 8999999999999554433322211 13455666666655544 555555543332
Q ss_pred -ccee-EEeeEee-----cc----------CcCCCCCceEEEechHHHHHHHccCCC-C----CCCcEEEEeCCCcCccc
Q 007931 122 -KVGE-EVGYTIR-----FE----------DFTNKDLTAIKFLTDGVLLREMMDDPL-L----TKYSVIMVDEAHERSIS 179 (584)
Q Consensus 122 -~vg~-~vg~~~~-----~~----------~~~~~~~~~I~~~T~~~ll~~l~~~~~-l----~~~~~iIiDE~Her~~~ 179 (584)
..+. ..|.... .+ +.....-..+.++|+-..+........ . --.+++|+||+|-...+
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 1222 2331110 00 000000122333444333331111111 1 23489999999943333
Q ss_pred --hhHHHHHHHHHHHhcCCceEEEEecccChH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCC
Q 007931 180 --TDILLGLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEE 254 (584)
Q Consensus 180 --~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 254 (584)
..++++++..+ ...+.++|+||||++.. .+.++++.......... ....... +.+.....
T Consensus 354 ~~~~~l~~~i~~l--~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~e-~~~~~~~~-- 418 (733)
T COG1203 354 TMLAALLALLEAL--AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK----------FCPKEDE-PGLKRKER-- 418 (733)
T ss_pred chHHHHHHHHHHH--HhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccc----------ccccccc-cccccccc--
Confidence 23333333333 33478899999999654 34444443321000000 0000000 00000000
Q ss_pred CcchHHHHH--HHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCC-
Q 007931 255 PVSDYVQAA--VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT- 331 (584)
Q Consensus 255 ~~~~~~~~~--~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~- 331 (584)
.+..+.. ............+++++|-|+|+..+.++++.|++.. . .+..+||.+...+|.+.++.+
T Consensus 419 --~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~--------~-~v~LlHSRf~~~dR~~ke~~l~ 487 (733)
T COG1203 419 --VDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKG--------P-KVLLLHSRFTLKDREEKERELK 487 (733)
T ss_pred --hhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcC--------C-CEEEEecccchhhHHHHHHHHH
Confidence 0000000 0011111223456889999999999999999998762 2 799999999999999877632
Q ss_pred ---CCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCC---CcEEEEc
Q 007931 332 ---PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRL 405 (584)
Q Consensus 332 ---~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l 405 (584)
..+...|+|||++.|.|||+. .+++| +.+.+..+.+||+||++|.+ +|..|..
T Consensus 488 ~~~~~~~~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 488 KLFKQNEGFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred HHHhccCCeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 456788999999999999988 44544 44788999999999999994 5666555
Q ss_pred cC
Q 007931 406 YT 407 (584)
Q Consensus 406 ~~ 407 (584)
..
T Consensus 547 ~~ 548 (733)
T COG1203 547 ND 548 (733)
T ss_pred ec
Confidence 44
No 107
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.80 E-value=1.8e-18 Score=184.42 Aligned_cols=162 Identities=21% Similarity=0.195 Sum_probs=109.4
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc--cCCCeEEEEeCchHHHHHHHHHHHHHHhCCcc--e
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPRRLAVQAVASRVAEEMGVKV--G 124 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~--~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~v--g 124 (584)
+--...|.+.+..+..+..++|+|||.+|||+.-+ +..+.-. ...+-+|+|+|++++.+|--+.-.+.+..-.+ |
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisf-Y~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISF-YAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccH-HHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 44567889999999999999999999999995444 3333222 24567899999999999865555555422111 1
Q ss_pred e-EEe-eEeeccCcCCCCCceEEEechHHHHHHHccC----CCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCce
Q 007931 125 E-EVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDD----PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (584)
Q Consensus 125 ~-~vg-~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~----~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (584)
. ..| +.-.+ ...+-.++|.|+-|+.+-..+... .+..++++||+||+|.-+-.-| +++....-.-..+.
T Consensus 589 ~sl~g~ltqEY--sinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed---~l~~Eqll~li~CP 663 (1330)
T KOG0949|consen 589 VSLLGDLTQEY--SINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEED---GLLWEQLLLLIPCP 663 (1330)
T ss_pred hhhHhhhhHHh--cCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcccccc---chHHHHHHHhcCCC
Confidence 1 112 11111 111226999999999998888764 2488999999999994442211 12222122234677
Q ss_pred EEEEeccc-ChHHHHHHhh
Q 007931 199 LIISSATI-EAKSMSAFFH 216 (584)
Q Consensus 199 vi~~SAT~-~~~~~~~~~~ 216 (584)
++++|||+ |++.+..|++
T Consensus 664 ~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 664 FLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred eeEEecccCCHHHHHHHHH
Confidence 99999999 9999999998
No 108
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=8.1e-18 Score=182.36 Aligned_cols=326 Identities=17% Similarity=0.187 Sum_probs=197.7
Q ss_pred CCCchHHHHHHHHHHhcC----CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcc
Q 007931 48 RLPVYKYRTAILYLVETH----ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~----~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~v 123 (584)
.+.+...|..+.+.+.+. ...++.|-||||||-..-+++.+. ...++.+|+++|..++.. ++..|+...+|.++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~-L~~GkqvLvLVPEI~Ltp-q~~~rf~~rFg~~v 273 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKV-LAQGKQVLVLVPEIALTP-QLLARFKARFGAKV 273 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHH-HHcCCEEEEEeccccchH-HHHHHHHHHhCCCh
Confidence 345666777777777554 789999999999995544444433 445678899999988877 45666777788777
Q ss_pred eeEEeeEee---cc--CcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhH----HHHHHHHHHHhc
Q 007931 124 GEEVGYTIR---FE--DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDI----LLGLLKKIQRCR 194 (584)
Q Consensus 124 g~~vg~~~~---~~--~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~----l~~~l~~~~~~~ 194 (584)
+..++.-.. .+ .....+..+|+++|-..+.-- +.++++|||||-|+-+...+- -.--+..++...
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P------f~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLP------FKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCc------hhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 765552211 11 112233799999998766522 789999999999954432211 111122233345
Q ss_pred CCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcC
Q 007931 195 SDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKE 274 (584)
Q Consensus 195 ~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~ 274 (584)
.+..+|+-|||+..+.+.....+.........-.. ....+.+..++.+..+.+.... +....++.+.... .
T Consensus 348 ~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~-~a~~p~v~iiDmr~e~~~~~~~------lS~~Ll~~i~~~l--~ 418 (730)
T COG1198 348 ENAPVVLGSATPSLESYANAESGKYKLLRLTNRAG-RARLPRVEIIDMRKEPLETGRS------LSPALLEAIRKTL--E 418 (730)
T ss_pred hCCCEEEecCCCCHHHHHhhhcCceEEEEcccccc-ccCCCcceEEeccccccccCcc------CCHHHHHHHHHHH--h
Confidence 67899999999998877765333110000000000 0000111111212111111000 1122222222222 2
Q ss_pred CCCCEEEEeCcHH------------------------------------------------------------HHHHHHH
Q 007931 275 PPGDILVFLTGQD------------------------------------------------------------DIDATIQ 294 (584)
Q Consensus 275 ~~~~iLVF~~~~~------------------------------------------------------------~i~~l~~ 294 (584)
.+.++|+|+|.+. -++++.+
T Consensus 419 ~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteriee 498 (730)
T COG1198 419 RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEE 498 (730)
T ss_pred cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHH
Confidence 3455666666665 2377777
Q ss_pred HHHHHhhhccCCCCCeEEEEecCCCCHHH--HhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCC
Q 007931 295 LLTEEARTSKKNSSGLIILPLYSGLSRAE--QEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPIS 372 (584)
Q Consensus 295 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~--r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~ 372 (584)
.|.+.+ |+..++.+.++.+... -+..+..|.+|+.+|||.|.+++.|.|+|+++.|.-.+ -|...
T Consensus 499 eL~~~F-------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~------aD~~L 565 (730)
T COG1198 499 ELKRLF-------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLD------ADTGL 565 (730)
T ss_pred HHHHHC-------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEe------chhhh
Confidence 777775 5788998888876533 34568889999999999999999999999999974211 11122
Q ss_pred CcccceeeeccHHhHHHhccccCCC-CCcEEE
Q 007931 373 DIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (584)
Q Consensus 373 ~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~ 403 (584)
+...+.........+.|=+|||||. .+|.++
T Consensus 566 ~~~DfRA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 566 GSPDFRASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred cCCCcchHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 2223333345567788999999999 888764
No 109
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.4e-17 Score=179.84 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEE
Q 007931 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (584)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~v 338 (584)
...+++..+..++.. +.++||||.+.+..+.+++.|.+. ++....+|+.+...++..+.++++.|. |
T Consensus 434 K~~Aii~ei~~~~~~--GrpVLV~t~sv~~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--V 500 (908)
T PRK13107 434 KYQAIIKDIKDCRER--GQPVLVGTVSIEQSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA--V 500 (908)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEeCcHHHHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc--E
Confidence 345566666666654 667999999999999999999876 788899999999999999999999998 9
Q ss_pred EEeCCCCccccccC
Q 007931 339 VISTNIAETSLTLE 352 (584)
Q Consensus 339 lvaT~i~e~Gidip 352 (584)
+||||+|++|.||.
T Consensus 501 tIATnmAGRGTDIk 514 (908)
T PRK13107 501 TIATNMAGRGTDIV 514 (908)
T ss_pred EEecCCcCCCccee
Confidence 99999999999986
No 110
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.77 E-value=2.9e-21 Score=203.62 Aligned_cols=448 Identities=7% Similarity=-0.172 Sum_probs=322.1
Q ss_pred HHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCC---eEEEEeCchHHHHHHHHHHHHHH
Q 007931 42 IEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGG---RVIACTQPRRLAVQAVASRVAEE 118 (584)
Q Consensus 42 l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~---~~I~v~~~r~la~~~~~~~~~~~ 118 (584)
++..+.-+|+.+....|++++.++.+.++.+.||||||++.|+.+++......+ .-++.+++|...+...+.+..-+
T Consensus 398 I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~f 477 (1282)
T KOG0921|consen 398 IKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMF 477 (1282)
T ss_pred EeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceee
Confidence 444456689999999999999999999999999999999999999887443321 23788999999988888877777
Q ss_pred hCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCce
Q 007931 119 MGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (584)
Q Consensus 119 ~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (584)
.+..++...+|...++.....-..-+-++|.+.++..+..+ .....+.+.||.|++++++|++..++..+ ++
T Consensus 478 ctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~ 549 (1282)
T KOG0921|consen 478 CTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PD 549 (1282)
T ss_pred eccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cc
Confidence 77777777778877766554435667788888888776654 45667889999999999999999888753 45
Q ss_pred EEEEecccChHHHHHHhhcCCCCCCCcccc-----cCCCCCCeEEEECCccccce--EEe------------cCCCcchH
Q 007931 199 LIISSATIEAKSMSAFFHARKGRRGLEGVE-----LVPRLEPAILSVEGRGFNVQ--IHY------------VEEPVSDY 259 (584)
Q Consensus 199 vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~--~~~------------~~~~~~~~ 259 (584)
+.++++|.++..|-.++-.+.......... ......+....-.++.+... ..| ........
T Consensus 550 ~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l 629 (1282)
T KOG0921|consen 550 VTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGL 629 (1282)
T ss_pred eeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHH
Confidence 689999999988876654443221111000 00000000000001100000 000 00112344
Q ss_pred HHHHHHHHHH------HHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCC
Q 007931 260 VQAAVSTVLL------IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (584)
Q Consensus 260 ~~~~~~~i~~------~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~ 333 (584)
.++....+.. +..-.+++..|+|++++.-.......+...- .-......+...|..+...++..+++....
T Consensus 630 ~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~---ilp~Hsq~~~~eqrkvf~~~p~gv~kii~s 706 (1282)
T KOG0921|consen 630 IEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE---ILPLHSQLTSQEQRKVFEPVPEGVTKIILS 706 (1282)
T ss_pred HHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcc---cccchhhcccHhhhhccCcccccccccccc
Confidence 4443333221 2233578889999999988877776665431 112345678889999999999999999999
Q ss_pred CCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 334 g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
+.+++...|+..++.|.+.++.+|++++..+.+.+-....++.....|.+.....||.||++|...+.||.+++...+..
T Consensus 707 tniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~e 786 (1282)
T KOG0921|consen 707 TNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAE 786 (1282)
T ss_pred cceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHh
Confidence 99999999999999999999999999999998888877777777778999999999999999999999999999999888
Q ss_pred hCCCCCCCcccccchhHHHHHHHhcCCCCccCC--CCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCCh
Q 007931 414 EIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF--DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEP 491 (584)
Q Consensus 414 ~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~--~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p 491 (584)
|..++.+|+.++.....++.++.+-.+.+..+ +.+.+|+......+.-.+....+.+..-..+ ++|+.....++.|
T Consensus 787 -m~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~-l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 787 -MFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLAR-LPIEPRIGKMMIL 864 (1282)
T ss_pred -hhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhh-ccCcccccceeee
Confidence 99999999999887777776666544444444 3455655555554444444444444444567 7899999999999
Q ss_pred hhhHHHHhhcc
Q 007931 492 MISKMILSSNE 502 (584)
Q Consensus 492 ~~~~~l~~~~~ 502 (584)
..+++...++.
T Consensus 865 g~~~g~~~~m~ 875 (1282)
T KOG0921|consen 865 GTALGAGSVMC 875 (1282)
T ss_pred chhhccchhhh
Confidence 88887665543
No 111
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.75 E-value=2.7e-18 Score=143.30 Aligned_cols=91 Identities=38% Similarity=0.740 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCChHHHHHHHHhhccCcccccCcccHHHHH--HHH
Q 007931 459 RALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELD--EAK 536 (584)
Q Consensus 459 ~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~l~~~~~f~~~~~~~~~~~--~~~ 536 (584)
+|++.|+.+||||++|++| ++|+.|+.||++|++||+|+.|..++|.+++++|+|+|+++++|..+.+.++..+ ..+
T Consensus 1 ~A~~~L~~Lgald~~~~lT-~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~ 79 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLT-PLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAK 79 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B--HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HH
T ss_pred CHHHHHHHCCCCCCCCCcC-HHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHH
Confidence 4889999999999999999 7999999999999999999999999999999999999999999999865544332 233
Q ss_pred hh---------ccCCCCCHHHHH
Q 007931 537 LR---------FAAAEGDHVTFL 550 (584)
Q Consensus 537 ~~---------~~~~~~D~~~~l 550 (584)
.+ +....|||+++|
T Consensus 80 ~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 80 KKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp HTT----------BTTBHHHHHH
T ss_pred HHhhhhhcccccCCCCCCHHhcC
Confidence 33 466789999986
No 112
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.74 E-value=2.5e-17 Score=156.87 Aligned_cols=177 Identities=20% Similarity=0.104 Sum_probs=119.1
Q ss_pred cCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc----cCCCeEEEEeCch
Q 007931 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPR 104 (584)
Q Consensus 29 ~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~----~~~~~~I~v~~~r 104 (584)
|++++++...+..+.+....- .+.+|.+.+..+.+++++++++|||+|||......++.... ..+.++|+++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~-~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEK-PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCC-CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 678889988888887754443 57788888888888999999999999999543323222222 1345789999999
Q ss_pred HHHHHHHH--HHHHHHhCCcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccch
Q 007931 105 RLAVQAVA--SRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (584)
Q Consensus 105 ~la~~~~~--~~~~~~~~~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~ 180 (584)
+++.|... +.+....+..+....|.....+. .......+|+++|++.+++.+..... +.+++++|+||+|.-. +.
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~ 158 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DM 158 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-cc
Confidence 99887433 33444445555555552221111 11112688999999999998866554 8899999999999422 33
Q ss_pred hHHHHHHHHHHHhcCCceEEEEecccC
Q 007931 181 DILLGLLKKIQRCRSDLRLIISSATIE 207 (584)
Q Consensus 181 d~l~~~l~~~~~~~~~~~vi~~SAT~~ 207 (584)
.+...+...+.....+.+++++|||++
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 333333333334556899999999995
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.74 E-value=2.6e-16 Score=167.54 Aligned_cols=341 Identities=15% Similarity=0.166 Sum_probs=186.3
Q ss_pred HHHHhcC-CEEEEEcCCCChHHHHHHHHHHhcCc-cCCCeEEEEeCchHHHHHHHHHHHHHHhC-CcceeEEeeEeeccC
Q 007931 59 LYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEEMG-VKVGEEVGYTIRFED 135 (584)
Q Consensus 59 l~~l~~~-~~viv~a~TGsGKT~~ip~~l~~~~~-~~~~~~I~v~~~r~la~~~~~~~~~~~~~-~~vg~~vg~~~~~~~ 135 (584)
.+++.++ +-++++..||+|||..+-+++..... ..-+++++++-.+.|..|.... +...+. ......+. +.
T Consensus 178 ~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~a-f~~~~P~~~~~n~i~-----~~ 251 (875)
T COG4096 178 IEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGA-FEDFLPFGTKMNKIE-----DK 251 (875)
T ss_pred HHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHH-HHHhCCCccceeeee-----cc
Confidence 4555544 35999999999999443333222111 1235678888888887776544 333332 11111111 11
Q ss_pred cCCCCCceEEEechHHHHHHHccC-C----C-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccCh-
Q 007931 136 FTNKDLTAIKFLTDGVLLREMMDD-P----L-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA- 208 (584)
Q Consensus 136 ~~~~~~~~I~~~T~~~ll~~l~~~-~----~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~- 208 (584)
.... .++|.++|.+.+...+... . . ...+++||||||| |++..+.- +++..+ .. ..++++||+..
T Consensus 252 ~~~~-s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYF----dA-~~~gLTATP~~~ 323 (875)
T COG4096 252 KGDT-SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYF----DA-ATQGLTATPKET 323 (875)
T ss_pred cCCc-ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHH----HH-HHHhhccCcccc
Confidence 1122 5799999999998877554 1 1 4568999999999 88765433 222222 12 23455999922
Q ss_pred H--HHHHHhhcCCC-CCCCcccc-cCCCCCCeEEEEC------Ccccc-c----eEEe----cCC------------Ccc
Q 007931 209 K--SMSAFFHARKG-RRGLEGVE-LVPRLEPAILSVE------GRGFN-V----QIHY----VEE------------PVS 257 (584)
Q Consensus 209 ~--~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~------~~~~~-v----~~~~----~~~------------~~~ 257 (584)
. .=-.||++.|+ .+++.... .....++.++.++ |..+. . +.+. .+. ...
T Consensus 324 ~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~ 403 (875)
T COG4096 324 IDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIP 403 (875)
T ss_pred cccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhcccc
Confidence 1 12356743332 22222110 0000111122221 11100 0 0000 000 001
Q ss_pred hHHHHHHHHHHHHHhc--C--CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCC-C
Q 007931 258 DYVQAAVSTVLLIHDK--E--PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT-P 332 (584)
Q Consensus 258 ~~~~~~~~~i~~~~~~--~--~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~-~ 332 (584)
...+.+...+...... . ..+++||||.+..+++.+...|.+..++. .+--+..+.|.-...+ ..|-+-+ +
T Consensus 404 ~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~----~~~~a~~IT~d~~~~q-~~Id~f~~k 478 (875)
T COG4096 404 FRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY----NGRYAMKITGDAEQAQ-ALIDNFIDK 478 (875)
T ss_pred chHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc----cCceEEEEeccchhhH-HHHHHHHhc
Confidence 1123333334444333 1 24789999999999999999998886542 2334555666544332 2222111 3
Q ss_pred CCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCC--c------EEEE
Q 007931 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP--G------KCYR 404 (584)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~--G------~~~~ 404 (584)
+.-.+|.++.+++.+|||+|.|..+|-.-. -.|+.-|+||+||+-|..+ | ..|.
T Consensus 479 e~~P~IaitvdlL~TGiDvpev~nlVF~r~------------------VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ 540 (875)
T COG4096 479 EKYPRIAITVDLLTTGVDVPEVVNLVFDRK------------------VRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFT 540 (875)
T ss_pred CCCCceEEehhhhhcCCCchheeeeeehhh------------------hhhHHHHHHHhcCccccCccccCccccceeEE
Confidence 456789999999999999999988885433 4589999999999999822 3 2344
Q ss_pred ccC---hHHHhhhCCCCCCCcccccchhHHHHHHHh
Q 007931 405 LYT---EEYFVKEIPAEGIPEMQRSNLVSCVIQLKA 437 (584)
Q Consensus 405 l~~---~~~~~~~~~~~~~pei~r~~l~~~~L~l~~ 437 (584)
+++ --.|-+ +.....++-.+..+..=++.-..
T Consensus 541 ifDf~~~~~~~~-~~~~~~e~~~~~~l~~rLF~~~~ 575 (875)
T COG4096 541 IFDFVDNTEYFE-MDPEMREGRVRVSLEQRLFADRL 575 (875)
T ss_pred EEEhhhhhhhhc-cCcccccccccchHHHHHhhhhh
Confidence 443 333333 45555555566665554444333
No 114
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=1.7e-16 Score=160.87 Aligned_cols=276 Identities=23% Similarity=0.256 Sum_probs=179.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCce
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~ 143 (584)
+.+++.-+|||.||||+-+-+-+.+. . .-+||-|.|-||. ++..|+ ...|+.+...+|-..++...... .++
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a---k--sGvycGPLrLLA~-EV~~r~-na~gipCdL~TGeE~~~~~~~~~-~a~ 261 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA---K--SGVYCGPLRLLAH-EVYDRL-NALGIPCDLLTGEERRFVLDNGN-PAQ 261 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh---c--cceecchHHHHHH-HHHHHh-hhcCCCccccccceeeecCCCCC-ccc
Confidence 34567889999999998887776554 2 3388887765554 566654 45688887888866655444333 577
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCC-----cCc-cchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhc
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAH-----ERS-ISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~H-----er~-~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~ 217 (584)
.+=||-++.- .-..|++.||||++ .|+ .++..++++...-.....+. |-+ +.+.+....
T Consensus 262 hvScTVEM~s-------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGep------svl--dlV~~i~k~ 326 (700)
T KOG0953|consen 262 HVSCTVEMVS-------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEP------SVL--DLVRKILKM 326 (700)
T ss_pred ceEEEEEEee-------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCc------hHH--HHHHHHHhh
Confidence 7888887653 23568999999999 455 45566666665543332221 111 112222111
Q ss_pred CCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHH
Q 007931 218 RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (584)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~ 297 (584)
.|.. +++++.+...+--+ .+.+..-..+-.+|+++|-. ++++|-.+...+.
T Consensus 327 -----------------------TGd~--vev~~YeRl~pL~v---~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE 377 (700)
T KOG0953|consen 327 -----------------------TGDD--VEVREYERLSPLVV---EETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIE 377 (700)
T ss_pred -----------------------cCCe--eEEEeecccCccee---hhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHH
Confidence 1111 12222111111000 01222223344567776644 6888999999998
Q ss_pred HHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCC--CCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcc
Q 007931 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR--GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIE 375 (584)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~--g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~ 375 (584)
+.. +..++.+||+||++.|..--..|.+ +..+|+|||++.++|+|+. |+-||.+.+.| |+
T Consensus 378 ~~g--------~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K---ys------ 439 (700)
T KOG0953|consen 378 KAG--------NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK---YS------ 439 (700)
T ss_pred Hhc--------CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeeccc---CC------
Confidence 773 5669999999999988876666654 8999999999999999987 77777766654 33
Q ss_pred cceeeeccHHhHHHhccccCCC----CCcEEEEccChH
Q 007931 376 NLVVAPISKASARQRAGRAGRV----RPGKCYRLYTEE 409 (584)
Q Consensus 376 ~l~~~~~s~~~~~QR~GRaGR~----~~G~~~~l~~~~ 409 (584)
.-.+.+++.+++.|.+|||||. ..|.+-.+..++
T Consensus 440 g~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 440 GRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred cccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 2234489999999999999998 457777777665
No 115
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.4e-15 Score=166.33 Aligned_cols=124 Identities=21% Similarity=0.225 Sum_probs=92.6
Q ss_pred cCCC--chHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhC
Q 007931 47 QRLP--VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMG 120 (584)
Q Consensus 47 ~~lP--~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~ 120 (584)
...| ...++.+++..+..++.+|..++||+||| +.+|.+... . .+..+++++|++.||.+ .+...+.+.+|
T Consensus 87 ~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~a--L-~g~~v~IVTpTrELA~Qdae~m~~L~k~lG 163 (970)
T PRK12899 87 YHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNA--L-TGKPVHLVTVNDYLAQRDCEWVGSVLRWLG 163 (970)
T ss_pred ccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHH--h-hcCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3456 78888889999999999999999999999 566655432 1 22347888999999987 55666777888
Q ss_pred CcceeEEeeEeeccCcCCCCCceEEEechHHH-HHHHccCCC-C-------CCCcEEEEeCCC
Q 007931 121 VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDPL-L-------TKYSVIMVDEAH 174 (584)
Q Consensus 121 ~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~l-l~~l~~~~~-l-------~~~~~iIiDE~H 174 (584)
..++..+|.....+..... .++|+|+||+.| ++.+..+.. + +.+.++|||||+
T Consensus 164 LsV~~i~GG~~~~eq~~~y-~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEAD 225 (970)
T PRK12899 164 LTTGVLVSGSPLEKRKEIY-QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVD 225 (970)
T ss_pred CeEEEEeCCCCHHHHHHHc-CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechh
Confidence 8888877743322222223 589999999999 888876633 3 356899999999
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.69 E-value=5.6e-16 Score=171.60 Aligned_cols=319 Identities=15% Similarity=0.099 Sum_probs=163.8
Q ss_pred cCCCchHHHHHH---HHHHhc------CCEEEEEcCCCChHHHHHHHHHHhc-CccCCCeEEEEeCchHHHHHHHHHHHH
Q 007931 47 QRLPVYKYRTAI---LYLVET------HATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVA 116 (584)
Q Consensus 47 ~~lP~~~~~~~i---l~~l~~------~~~viv~a~TGsGKT~~ip~~l~~~-~~~~~~~~I~v~~~r~la~~~~~~~~~ 116 (584)
+..|.+.+...+ ++.+.+ .+..+|..+||||||..+..++... ......++|++++.+.|..|... .+.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~-~f~ 314 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMK-EFQ 314 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHH-HHH
Confidence 344555555443 333333 3579999999999994443332221 11234567888888888776443 333
Q ss_pred HHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccC--CC-CC-CCcEEEEeCCCcCccchhHHHHHHHHHHH
Q 007931 117 EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD--PL-LT-KYSVIMVDEAHERSISTDILLGLLKKIQR 192 (584)
Q Consensus 117 ~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~--~~-l~-~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (584)
......+ ...+...............|+|+|.+.+.+.+... .. .. .-.+||+|||| |+....+. +.+..
T Consensus 315 ~~~~~~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~----~~l~~ 388 (667)
T TIGR00348 315 SLQKDCA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA----KNLKK 388 (667)
T ss_pred hhCCCCC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH----HHHHh
Confidence 3321111 01110000101111224789999999998643221 11 11 12389999999 77554322 22333
Q ss_pred hcCCceEEEEecccC----hHHHHHHhh----cCCCCCCCcccccCCCCCCeEEEECCccccceEEecCC----------
Q 007931 193 CRSDLRLIISSATIE----AKSMSAFFH----ARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEE---------- 254 (584)
Q Consensus 193 ~~~~~~vi~~SAT~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------- 254 (584)
..++...+++||||- ...+ ..|+ ............... ...++. ..++. .+......
T Consensus 389 ~~p~a~~lGfTaTP~~~~d~~t~-~~f~~~fg~~i~~Y~~~~AI~dG-~~~~i~-Y~~~~--~~~~~~~~~l~~~~~~~~ 463 (667)
T TIGR00348 389 ALKNASFFGFTGTPIFKKDRDTS-LTFAYVFGRYLHRYFITDAIRDG-LTVKID-YEDRL--PEDHLDRKKLDAFFDEIF 463 (667)
T ss_pred hCCCCcEEEEeCCCccccccccc-ccccCCCCCeEEEeeHHHHhhcC-CeeeEE-EEecc--hhhccChHHHHHHHHHHH
Confidence 456788999999992 1111 2222 111000000000000 000000 00000 00000000
Q ss_pred ---Cc--c---------------------hHHHHHHHHHHH-HHh--cCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccC
Q 007931 255 ---PV--S---------------------DYVQAAVSTVLL-IHD--KEPPGDILVFLTGQDDIDATIQLLTEEARTSKK 305 (584)
Q Consensus 255 ---~~--~---------------------~~~~~~~~~i~~-~~~--~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~ 305 (584)
+. . +.++.....+.. ... ...+++.+|||.++.++..+++.|.+......
T Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~- 542 (667)
T TIGR00348 464 ELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF- 542 (667)
T ss_pred HhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc-
Confidence 00 0 001111111211 111 22358899999999999999998877643211
Q ss_pred CCCCeEEEEecCCCCHH---------------------HHhcccCCCCC-CCcEEEEeCCCCccccccCCeEEEEecCCc
Q 007931 306 NSSGLIILPLYSGLSRA---------------------EQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFS 363 (584)
Q Consensus 306 ~~~~~~v~~lh~~l~~~---------------------~r~~i~~~~~~-g~~~vlvaT~i~e~Gidip~v~~VId~g~~ 363 (584)
+.....++++...+ ....+.+.|++ +..+|+|.++.+.+|+|.|.+.+++-.
T Consensus 543 ---~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld--- 616 (667)
T TIGR00348 543 ---EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLD--- 616 (667)
T ss_pred ---CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEe---
Confidence 12334444443222 12345666754 678999999999999999999887631
Q ss_pred cceeecCCCCcccceeeeccHHhHHHhccccCCC-CCc
Q 007931 364 KQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPG 400 (584)
Q Consensus 364 k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G 400 (584)
.|.....++|.+||+.|. .+|
T Consensus 617 ----------------Kplk~h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 617 ----------------KPLKYHGLLQAIARTNRIDGKD 638 (667)
T ss_pred ----------------ccccccHHHHHHHHhccccCCC
Confidence 144455678999999995 444
No 117
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.69 E-value=3.9e-15 Score=150.75 Aligned_cols=124 Identities=22% Similarity=0.203 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEE
Q 007931 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (584)
Q Consensus 260 ~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vl 339 (584)
++..+..+..... .+..+||-+-|++.++.+.++|.+. ++++.++||++..-||.+|+...+.|..+||
T Consensus 432 vdDL~~EI~~r~~--~~eRvLVTtLTKkmAEdLT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvL 500 (663)
T COG0556 432 VDDLLSEIRKRVA--KNERVLVTTLTKKMAEDLTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVL 500 (663)
T ss_pred HHHHHHHHHHHHh--cCCeEEEEeehHHHHHHHHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEE
Confidence 3444444444333 3467999999999999999999887 9999999999999999999999999999999
Q ss_pred EeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccC
Q 007931 340 ISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYT 407 (584)
Q Consensus 340 vaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~ 407 (584)
|.-|.+-.|+|+|.|..|.-.+.-|.-+ ..|..+.+|-+|||.|.-.|+++...+
T Consensus 501 VGINLLREGLDiPEVsLVAIlDADKeGF-------------LRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 501 VGINLLREGLDLPEVSLVAILDADKEGF-------------LRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred EeehhhhccCCCcceeEEEEeecCcccc-------------ccccchHHHHHHHHhhccCCeEEEEch
Confidence 9999999999999999987655444333 457788999999999999999876654
No 118
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.69 E-value=1.1e-16 Score=147.56 Aligned_cols=156 Identities=21% Similarity=0.239 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCcc-CCCeEEEEeCchHHHHHHHHHHHHHHhCC---cceeEEe
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMGV---KVGEEVG 128 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~-~~~~~I~v~~~r~la~~~~~~~~~~~~~~---~vg~~vg 128 (584)
+.|.+++..+.+++++++.||||+|||+.+...++..... ....+++++|.++++.+.. +++...... .+....|
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~-~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQF-ERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHH-HHHHHHTTTTTSSEEEEST
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccc-ccccccccccccccccccc
Confidence 5788899988899999999999999997766555544332 2347899999998887644 444444433 3333333
Q ss_pred eEe-e--ccCcCCCCCceEEEechHHHHHHHccCC-CCCCCcEEEEeCCCcCccc--hhHHHHHHHHHHHhcCCceEEEE
Q 007931 129 YTI-R--FEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSIS--TDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 129 ~~~-~--~~~~~~~~~~~I~~~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~~~--~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
... . ..... ....+|+|+||+.+.+.+.... .+.++++||+||+|..... .+.+..+++.+ ....+.++|+|
T Consensus 81 ~~~~~~~~~~~~-~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~-~~~~~~~~i~~ 158 (169)
T PF00270_consen 81 GQSISEDQREVL-SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRL-KRFKNIQIILL 158 (169)
T ss_dssp TSCHHHHHHHHH-HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS-HTTTTSEEEEE
T ss_pred cccccccccccc-cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHh-cCCCCCcEEEE
Confidence 111 1 00111 1268999999999999887643 3566999999999954432 12222222222 22346899999
Q ss_pred ecccChHHHH
Q 007931 203 SATIEAKSMS 212 (584)
Q Consensus 203 SAT~~~~~~~ 212 (584)
|||++ ..+.
T Consensus 159 SAT~~-~~~~ 167 (169)
T PF00270_consen 159 SATLP-SNVE 167 (169)
T ss_dssp ESSST-HHHH
T ss_pred eeCCC-hhHh
Confidence 99997 5444
No 119
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=1.4e-16 Score=161.16 Aligned_cols=318 Identities=13% Similarity=0.071 Sum_probs=201.6
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcC--ccCCCeEEEEeCchHHHHHHHHHH-----HHHHhCC
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRRLAVQAVASR-----VAEEMGV 121 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~--~~~~~~~I~v~~~r~la~~~~~~~-----~~~~~~~ 121 (584)
-.-+++|.+++..+.+++++++.-.|.+||++ +|+...... ..+....+++.|+.+++..+-... +-.++..
T Consensus 285 E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~-~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~ 363 (1034)
T KOG4150|consen 285 ESGIAISLELLKFASEGRADGGNEARQAGKGT-CPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKS 363 (1034)
T ss_pred cchhhhhHHHHhhhhhcccccccchhhcCCcc-CcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhc
Confidence 44567888889999999999999999999993 333221111 113334577777777665311000 0011111
Q ss_pred c-ceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-----CCCCcEEEEeCCCcCc-cchhHHHHHHHHHHH--
Q 007931 122 K-VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-----LTKYSVIMVDEAHERS-ISTDILLGLLKKIQR-- 192 (584)
Q Consensus 122 ~-vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-----l~~~~~iIiDE~Her~-~~~d~l~~~l~~~~~-- 192 (584)
. +...-|.+...++.....+.+++|..|.+.....+.+.. +-...++++||+|-.. +........++++.+
T Consensus 364 A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~ 443 (1034)
T KOG4150|consen 364 AYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLI 443 (1034)
T ss_pred ceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHH
Confidence 1 111111111111111122678999999888776654432 3445789999999433 222233333333332
Q ss_pred ----hcCCceEEEEeccc-C-hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC---------cc
Q 007931 193 ----CRSDLRLIISSATI-E-AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP---------VS 257 (584)
Q Consensus 193 ----~~~~~~vi~~SAT~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~ 257 (584)
...+++++-.|||. + .....+.|+-... ..+.++|.+..-+...+..+ ..
T Consensus 444 ~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~---------------~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 444 KGFEASINMGVYDGDTPYKDRTRLRSELANLSEL---------------ELVTIDGSPSSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred HHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcce---------------EEEEecCCCCccceEEEeCCCCCCcchhhhh
Confidence 35789999999999 4 4445566654432 25666776554443332222 12
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcE
Q 007931 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (584)
Q Consensus 258 ~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~ 337 (584)
+++......+..+... +-.++.||++++-++.+....++.+-+.+.+ .--.|..+.||-..++|.+|+...-.|+.+
T Consensus 509 ~~i~E~s~~~~~~i~~--~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~-LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~ 585 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQH--GLRCIAFCPSRKLCELVLCLTREILAETAPH-LVEAITSYRGGYIAEDRRKIESDLFGGKLC 585 (1034)
T ss_pred hHHHHHHHHHHHHHHc--CCcEEEeccHHHHHHHHHHHHHHHHHHhhHH-HHHHHHhhcCccchhhHHHHHHHhhCCeee
Confidence 2333333334444333 4459999999999988887776654332210 012366788999999999999988899999
Q ss_pred EEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEE
Q 007931 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (584)
Q Consensus 338 vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~ 403 (584)
-|+|||.+|-||||...+.|+.+|+ |.|.+++.|.+|||||. .+....
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk~SLav 634 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNKPSLAV 634 (1034)
T ss_pred EEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccCCCceEE
Confidence 9999999999999999999999999 99999999999999998 555443
No 120
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.65 E-value=3.1e-16 Score=128.80 Aligned_cols=90 Identities=50% Similarity=0.847 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhccc-CChHHHHHHHHhhccCcccccCcccHHHHHHHHh
Q 007931 459 RALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNEL-GCSEEIITISAVLSIQSIWVSGRGAQKELDEAKL 537 (584)
Q Consensus 459 ~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~-~c~~~~l~i~a~l~~~~~f~~~~~~~~~~~~~~~ 537 (584)
+|++.|+.+||||++|++| ++|+.|++||++|++||+|+.+..+ +|.+++++|+|++++.++|..+ ..+.+....+.
T Consensus 1 ~A~~~L~~LgAld~~~~lT-~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~ 78 (92)
T smart00847 1 AALELLYELGALDDDGRLT-PLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARR 78 (92)
T ss_pred CHHHHHHHCCCcCCCCCcC-HHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHH
Confidence 3789999999999999999 7999999999999999999999999 8999999999999999988776 44556677788
Q ss_pred hccCC-CCCHHHHH
Q 007931 538 RFAAA-EGDHVTFL 550 (584)
Q Consensus 538 ~~~~~-~~D~~~~l 550 (584)
.|... .|||++++
T Consensus 79 ~~~~~~~~D~~~~l 92 (92)
T smart00847 79 RFASGRESDHLTLL 92 (92)
T ss_pred HccCCCCCChhhhC
Confidence 88887 79999864
No 121
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.65 E-value=1.5e-15 Score=166.29 Aligned_cols=114 Identities=21% Similarity=0.175 Sum_probs=100.3
Q ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCC
Q 007931 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG 353 (584)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~ 353 (584)
..+.++||||++++.++.+++.|.+. ++.+..+||+++..+|.++++.|++|...|+|||+++++|+|+|+
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~ 510 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPE 510 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCC
Confidence 34667999999999999999999876 788999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChH
Q 007931 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (584)
Q Consensus 354 v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~ 409 (584)
+++||.++..+. -.|.+..+|+||+|||||..+|+++.+++..
T Consensus 511 v~lVvi~Dadif-------------G~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 511 VSLVAILDADKE-------------GFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred CcEEEEeCcccc-------------cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999987652110 0167889999999999999999999888753
No 122
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=3.4e-15 Score=163.31 Aligned_cols=320 Identities=17% Similarity=0.161 Sum_probs=203.9
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHH---HhCCcceeEEeeEeeccCcCCC
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE---EMGVKVGEEVGYTIRFEDFTNK 139 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~---~~~~~vg~~vg~~~~~~~~~~~ 139 (584)
+.+++++|.+|+|||||..+...++. ....+++++++|.-.++......+..+ -.|..+....|-. ..+.+...
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~-s~~lkl~~ 1233 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGET-SLDLKLLQ 1233 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcc-ccchHHhh
Confidence 56889999999999999888777765 335578899999888877655554433 3333333333321 12222223
Q ss_pred CCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCcc-ch---hHHHHHHHHHHHhcCCceEEEEeccc-ChHHHHHH
Q 007931 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI-ST---DILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAF 214 (584)
Q Consensus 140 ~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~-~~---d~l~~~l~~~~~~~~~~~vi~~SAT~-~~~~~~~~ 214 (584)
..+|+++||+.+-.. + ..+.+++.|.||.|.-+- .. ..+.++........+++|++.+|..+ |+.++
T Consensus 1234 -~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~--- 1305 (1674)
T KOG0951|consen 1234 -KGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL--- 1305 (1674)
T ss_pred -hcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh---
Confidence 789999999987654 1 577899999999995442 11 22233222233456789999999988 77766
Q ss_pred hhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHH-------HHHHHHHHHhcCCCCCEEEEeCcHH
Q 007931 215 FHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQA-------AVSTVLLIHDKEPPGDILVFLTGQD 287 (584)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~iLVF~~~~~ 287 (584)
.+..... ...+....|..|.+++........+... ....+... ...+++.+||+|+++
T Consensus 1306 ig~s~~~-------------v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~--a~~~k~~~vf~p~rk 1370 (1674)
T KOG0951|consen 1306 IGASSSG-------------VFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH--AGNRKPAIVFLPTRK 1370 (1674)
T ss_pred ccccccc-------------eeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH--hcCCCCeEEEeccch
Confidence 3322211 0122234455555555433332222111 11222222 235678999999999
Q ss_pred HHHHHHHHHHHHhhh---------------ccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccC
Q 007931 288 DIDATIQLLTEEART---------------SKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (584)
Q Consensus 288 ~i~~l~~~L~~~~~~---------------~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip 352 (584)
++..++..+...... ......+..|. |-+++..++.-+-..|..|.++|+|...- -.|+-..
T Consensus 1371 ~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~ 1447 (1674)
T KOG0951|consen 1371 HARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK 1447 (1674)
T ss_pred hhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc
Confidence 998877655432111 01122244455 99999999999999999999999988876 7888776
Q ss_pred CeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccC--hHHHhhhCCCCCCC
Q 007931 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYT--EEYFVKEIPAEGIP 421 (584)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~--~~~~~~~~~~~~~p 421 (584)
.--+|| +.+..||...+... +.+.+...|+.|+|.| .|+|+.+.. +..|...+...+.|
T Consensus 1448 ~~lVvv----mgt~~ydg~e~~~~----~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1448 AHLVVV----MGTQYYDGKEHSYE----DYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred ceEEEE----ecceeecccccccc----cCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 554554 34567998776443 7788999999999998 688877765 33443336555555
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.62 E-value=1.5e-13 Score=157.10 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCc
Q 007931 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (584)
Q Consensus 257 ~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~ 336 (584)
.+|.+.....+..+... .+|++|||+++.+..+.+++.|..... ..++.+.. .+.. ..|.++++.|++|+.
T Consensus 656 ~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~-----~~~~~~l~--q~~~-~~r~~ll~~F~~~~~ 726 (850)
T TIGR01407 656 EEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPE-----FEGYEVLA--QGIN-GSRAKIKKRFNNGEK 726 (850)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhcc-----ccCceEEe--cCCC-ccHHHHHHHHHhCCC
Confidence 45666667777666544 457899999999999999999875321 01233332 2332 467888999999999
Q ss_pred EEEEeCCCCccccccCCeE--EEEecCCccceeecC-------------CCCcccceeeeccHHhHHHhccccCCC--CC
Q 007931 337 KVVISTNIAETSLTLEGIV--YVVDSGFSKQRFYNP-------------ISDIENLVVAPISKASARQRAGRAGRV--RP 399 (584)
Q Consensus 337 ~vlvaT~i~e~Gidip~v~--~VId~g~~k~~~~d~-------------~~~~~~l~~~~~s~~~~~QR~GRaGR~--~~ 399 (584)
.||++|+.+.+|||+|+.. .||-.++.-..--|| ...+..+. .|-....+.|-+||.=|. ..
T Consensus 727 ~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~-lP~A~~~l~Qa~GRlIRs~~D~ 805 (850)
T TIGR01407 727 AILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYV-LPMAIIRLRQALGRLIRRENDR 805 (850)
T ss_pred eEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhh-HHHHHHHHHHhhccccccCCce
Confidence 9999999999999999765 566666643211111 01111111 144566788999999998 44
Q ss_pred cEEEEc
Q 007931 400 GKCYRL 405 (584)
Q Consensus 400 G~~~~l 405 (584)
|..+.+
T Consensus 806 G~v~il 811 (850)
T TIGR01407 806 GSIVIL 811 (850)
T ss_pred EEEEEE
Confidence 665544
No 124
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.2e-13 Score=149.69 Aligned_cols=275 Identities=22% Similarity=0.216 Sum_probs=178.7
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHH---HHhCCcce
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA---EEMGVKVG 124 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~---~~~~~~vg 124 (584)
..+.|..|.--..-+..|+..-+.||||.||||....+.+-.+. .++++.+++|++.|+.| +.+++. ...+ ...
T Consensus 80 G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q-~~~kl~~~~e~~~-~~~ 156 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK-KGKRVYIIVPTTTLVRQ-VYERLKKFAEDAG-SLD 156 (1187)
T ss_pred CCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh-cCCeEEEEecCHHHHHH-HHHHHHHHHhhcC-Ccc
Confidence 45888888888888999999999999999999665544333322 44678889999888776 444433 3333 222
Q ss_pred eEEeeEeeccCc--------CCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCC---cCccchhHHHHHHH-----
Q 007931 125 EEVGYTIRFEDF--------TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAH---ERSISTDILLGLLK----- 188 (584)
Q Consensus 125 ~~vg~~~~~~~~--------~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~H---er~~~~d~l~~~l~----- 188 (584)
..+.|+...... ...++.+|+++|.+-|.+.+..-.. -++++|++|+++ ..+-+.|-++.++-
T Consensus 157 ~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~ 235 (1187)
T COG1110 157 VLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEV 235 (1187)
T ss_pred eeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHH
Confidence 233355442221 1223789999999988776533211 378999999999 22333343332211
Q ss_pred -----------H-H---------------------HHhcCCceEEEEecccCh-----HHHHHHhhcCCCCCCCcccccC
Q 007931 189 -----------K-I---------------------QRCRSDLRLIISSATIEA-----KSMSAFFHARKGRRGLEGVELV 230 (584)
Q Consensus 189 -----------~-~---------------------~~~~~~~~vi~~SAT~~~-----~~~~~~~~~~~~~~~~~~~~~~ 230 (584)
. + .+..+.-.+|++|||..+ ..|.+.++-....
T Consensus 236 i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~--------- 306 (1187)
T COG1110 236 IESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGS--------- 306 (1187)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCc---------
Confidence 0 0 011244578999999933 3345555433210
Q ss_pred CCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCc---HHHHHHHHHHHHHHhhhccCCC
Q 007931 231 PRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTG---QDDIDATIQLLTEEARTSKKNS 307 (584)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~---~~~i~~l~~~L~~~~~~~~~~~ 307 (584)
......++...|... +-.+..++.+..+ +...|||+|. ++.++++++.|+++
T Consensus 307 ---------~~~~LRNIvD~y~~~---~~~e~~~elvk~l-----G~GgLIfV~~d~G~e~aeel~e~Lr~~-------- 361 (1187)
T COG1110 307 ---------GGEGLRNIVDIYVES---ESLEKVVELVKKL-----GDGGLIFVPIDYGREKAEELAEYLRSH-------- 361 (1187)
T ss_pred ---------cchhhhheeeeeccC---ccHHHHHHHHHHh-----CCCeEEEEEcHHhHHHHHHHHHHHHhc--------
Confidence 011123444444444 2223333333222 2248999999 88999999999886
Q ss_pred CCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeC----CCCccccccC-CeEEEEecCCccce
Q 007931 308 SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST----NIAETSLTLE-GIVYVVDSGFSKQR 366 (584)
Q Consensus 308 ~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT----~i~e~Gidip-~v~~VId~g~~k~~ 366 (584)
++.+..+|+. ..+.++.|..|+++++|.. +++-+|+|+| -++|+|.+|..|.+
T Consensus 362 -Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 362 -GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred -CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 8999999984 3677899999999999886 4899999999 68999999998655
No 125
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.61 E-value=4.2e-14 Score=159.84 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=92.1
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCC---CCcEEEEeCCCCcccccc
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR---GKRKVVISTNIAETSLTL 351 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~---g~~~vlvaT~i~e~Gidi 351 (584)
.+.++|||+.-......+.+.|... ++....+||+++.++|..+++.|.+ +..-+|++|.+++.|||+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 4568999999887777777777543 7788899999999999999999964 234678999999999999
Q ss_pred CCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEccChHHHhh
Q 007931 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 352 p~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (584)
...++||.++. |-+++...|+.||+-|- .+=.+|+|+++...+.
T Consensus 557 t~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 557 ATADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred hhCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 99999998766 67788888999999887 3346899998765543
No 126
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.59 E-value=6.3e-15 Score=129.56 Aligned_cols=104 Identities=28% Similarity=0.461 Sum_probs=94.9
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCe
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v 354 (584)
.++++||||++...++.+++.|.+. ...+.++||+++..+|..+++.|.+|..+|+++|+++++|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 5788999999999999999999763 6789999999999999999999999999999999999999999999
Q ss_pred EEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEc
Q 007931 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (584)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (584)
++||..+. +.+...+.|++||+||. ..|.|+.+
T Consensus 98 ~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 98 SVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CEEEEeCC------------------CCCHHHheecccccccCCCCceEEeC
Confidence 99998766 78899999999999999 57887653
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.57 E-value=2.6e-14 Score=157.77 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=99.5
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCe
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v 354 (584)
.+.+++|||++++.++.+++.|.+. ++.+..+||+++..+|..+++.|++|...|+|||+++++|+|+|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v 515 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEV 515 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCC
Confidence 4667999999999999999999775 7899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccCh
Q 007931 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTE 408 (584)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~ 408 (584)
++||.++.... | .|.+..+|+||+||+||...|.|+.+++.
T Consensus 516 ~lVii~d~eif-------G------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 516 SLVAILDADKE-------G------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred cEEEEeCCccc-------c------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99998654110 0 15688899999999999999999999883
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=7.3e-13 Score=141.83 Aligned_cols=118 Identities=21% Similarity=0.236 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEE
Q 007931 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (584)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~v 338 (584)
...++++.+...+. .+.+|||.+.+.+..+.+++.|.+. ++....+++.-...|-..|-++-+. -.|
T Consensus 412 k~~Aii~ei~~~~~--~GrPVLVgt~sI~~SE~ls~~L~~~---------gI~h~vLNAk~~~~EA~IIa~AG~~--gaV 478 (764)
T PRK12326 412 KNDAIVEHIAEVHE--TGQPVLVGTHDVAESEELAERLRAA---------GVPAVVLNAKNDAEEARIIAEAGKY--GAV 478 (764)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhC---------CCcceeeccCchHhHHHHHHhcCCC--CcE
Confidence 44556666666664 4667999999999999999999876 6666777776544444444444333 359
Q ss_pred EEeCCCCccccccC---------------CeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEE
Q 007931 339 VISTNIAETSLTLE---------------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKC 402 (584)
Q Consensus 339 lvaT~i~e~Gidip---------------~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~ 402 (584)
.||||.|++|.||. +=-|||-+.. +-|.--=.|-.|||||. .||.+
T Consensus 479 TIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer------------------heSrRID~QLrGRaGRQGDpGss 540 (764)
T PRK12326 479 TVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR------------------HRSERLDNQLRGRAGRQGDPGSS 540 (764)
T ss_pred EEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC------------------CchHHHHHHHhcccccCCCCCce
Confidence 99999999999986 2235554433 55666667999999999 88976
Q ss_pred EEccC
Q 007931 403 YRLYT 407 (584)
Q Consensus 403 ~~l~~ 407 (584)
-.+++
T Consensus 541 ~f~lS 545 (764)
T PRK12326 541 VFFVS 545 (764)
T ss_pred eEEEE
Confidence 55555
No 129
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.50 E-value=1e-14 Score=115.85 Aligned_cols=71 Identities=27% Similarity=0.403 Sum_probs=68.8
Q ss_pred CeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHH
Q 007931 309 GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASAR 388 (584)
Q Consensus 309 ~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~ 388 (584)
++.+..+||+++.++|+.+++.|.+|..+||+||+++++|+|+|++++||.++. +.|..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHHH
Confidence 889999999999999999999999999999999999999999999999999888 88999999
Q ss_pred HhccccCCC
Q 007931 389 QRAGRAGRV 397 (584)
Q Consensus 389 QR~GRaGR~ 397 (584)
|++||+||.
T Consensus 69 Q~~GR~~R~ 77 (78)
T PF00271_consen 69 QRIGRAGRI 77 (78)
T ss_dssp HHHTTSSTT
T ss_pred HHhhcCCCC
Confidence 999999995
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.50 E-value=1.8e-11 Score=138.34 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=87.5
Q ss_pred chHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecC-CCCHHHHhcccCCCCCCC
Q 007931 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYS-GLSRAEQEQVFSPTPRGK 335 (584)
Q Consensus 257 ~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~-~l~~~~r~~i~~~~~~g~ 335 (584)
.+|.+.....+..+. ..+|++||+++|.+..+.+++.|... ...+ ...| +.+ +.++.+.|+++.
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~-l~Qg~~~~---~~~l~~~F~~~~ 694 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSH-LAQEKNGT---AYNIKKRFDRGE 694 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcE-EEeCCCcc---HHHHHHHHHcCC
Confidence 457777777776665 45789999999999999999888542 2333 3333 222 345677788888
Q ss_pred cEEEEeCCCCccccccC--CeEEEEecCCccceeecCC----------CCcccc--eeeeccHHhHHHhccccCCC--CC
Q 007931 336 RKVVISTNIAETSLTLE--GIVYVVDSGFSKQRFYNPI----------SDIENL--VVAPISKASARQRAGRAGRV--RP 399 (584)
Q Consensus 336 ~~vlvaT~i~e~Gidip--~v~~VId~g~~k~~~~d~~----------~~~~~l--~~~~~s~~~~~QR~GRaGR~--~~ 399 (584)
..||++|+..-+|||+| +...||-.++.-..-.||- .|-+.+ ...|-....+.|-+||.=|. ..
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~ 774 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQK 774 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCc
Confidence 89999999999999997 3455555555422111211 111111 11144456788999999998 45
Q ss_pred cEEEEc
Q 007931 400 GKCYRL 405 (584)
Q Consensus 400 G~~~~l 405 (584)
|.++.+
T Consensus 775 Gvv~il 780 (820)
T PRK07246 775 SAVLIL 780 (820)
T ss_pred EEEEEE
Confidence 765543
No 131
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=4.6e-13 Score=147.31 Aligned_cols=120 Identities=23% Similarity=0.232 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEE
Q 007931 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (584)
Q Consensus 260 ~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vl 339 (584)
...++..+...+ ..+.++||||+|++.++.+++.|... ++....+|+ .+.+|...+..|+.+...|+
T Consensus 584 ~~Ali~~I~~~~--~~grpVLIft~Sve~sE~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~Vt 650 (1025)
T PRK12900 584 YNAIVLKVEELQ--KKGQPVLVGTASVEVSETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVT 650 (1025)
T ss_pred HHHHHHHHHHHh--hCCCCEEEEeCcHHHHHHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEE
Confidence 344455554444 34678999999999999999999876 788889997 47788888888999999999
Q ss_pred EeCCCCccccccC---CeEE-----EEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHH
Q 007931 340 ISTNIAETSLTLE---GIVY-----VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (584)
Q Consensus 340 vaT~i~e~Gidip---~v~~-----VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (584)
||||+|++|+||+ +|.. ||.+.. +-|...+.||.||+||. .||.+..+++.++
T Consensus 651 IATNMAGRGtDIkl~~~V~~vGGL~VIgter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 651 IATNMAGRGTDIKLGEGVRELGGLFILGSER------------------HESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred EeccCcCCCCCcCCccchhhhCCceeeCCCC------------------CchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 9999999999999 4433 365444 77888899999999999 8999998888654
No 132
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.46 E-value=3.2e-13 Score=135.46 Aligned_cols=317 Identities=15% Similarity=0.135 Sum_probs=178.0
Q ss_pred CchHHHHHHHHHHhcC---CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeE
Q 007931 50 PVYKYRTAILYLVETH---ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (584)
Q Consensus 50 P~~~~~~~il~~l~~~---~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~ 126 (584)
-+..+|+.-+..+-.| +.-||+-|.|+|||. +-.- +...-++.+ +|.-+..+..+++.+.+.......-...
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtL-VGvT---Aa~tikK~c-lvLcts~VSVeQWkqQfk~wsti~d~~i 376 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTL-VGVT---AACTIKKSC-LVLCTSAVSVEQWKQQFKQWSTIQDDQI 376 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCce-eeee---eeeeecccE-EEEecCccCHHHHHHHHHhhcccCccce
Confidence 3668888888888665 467899999999992 1110 111112233 3444666777778777766665554444
Q ss_pred EeeEeeccCcCCCCCceEEEechHHHHHHHccC--------CC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCc
Q 007931 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD--------PL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL 197 (584)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~--------~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~ 197 (584)
.-+.......... .+.|++.|..++...-... .+ -+..+++|+||+| .+....+..++..+...
T Consensus 377 ~rFTsd~Ke~~~~-~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH--vvPA~MFRRVlsiv~aH---- 449 (776)
T KOG1123|consen 377 CRFTSDAKERFPS-GAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH--VVPAKMFRRVLSIVQAH---- 449 (776)
T ss_pred EEeeccccccCCC-CCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc--cchHHHHHHHHHHHHHH----
Confidence 4444333333333 6889999987764321110 01 3568999999999 33333333333333322
Q ss_pred eEEEEeccc--ChHHHHHH-hhcCCCCCCCcccccCCCCCCeEEEECCccccceE----EecCCC----------cchHH
Q 007931 198 RLIISSATI--EAKSMSAF-FHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQI----HYVEEP----------VSDYV 260 (584)
Q Consensus 198 ~vi~~SAT~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~~----------~~~~~ 260 (584)
--++++||+ .-+.+.+. |-..|...+...+++...--...+......-|... .|+... .++.
T Consensus 450 cKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~K- 528 (776)
T KOG1123|consen 450 CKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNK- 528 (776)
T ss_pred hhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcch-
Confidence 246899998 22223221 11111111111111100000001111111111110 011110 0111
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCC-CCcEEE
Q 007931 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVV 339 (584)
Q Consensus 261 ~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~-g~~~vl 339 (584)
-.+.+-+.+.|.. .+.+||||....-...+-+-.| .--+++|..++.||.+|++.|.- ..++-|
T Consensus 529 FraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl--------------~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 529 FRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKL--------------GKPFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred hHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHc--------------CCceEECCCchhHHHHHHHhcccCCccceE
Confidence 2234555666655 5667999988766554444333 23368899999999999999974 468899
Q ss_pred EeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCc-------EEEEccChHHH
Q 007931 340 ISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPG-------KCYRLYTEEYF 411 (584)
Q Consensus 340 vaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G-------~~~~l~~~~~~ 411 (584)
+-.-+..+++|+|..++.|.-.- .--|+.+-.||.||.-|...+ ..|.|++++..
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISS-----------------H~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISS-----------------HGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred EEeeccCccccCCcccEEEEEcc-----------------cccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 99999999999999999985211 134667777999999888332 45677765543
No 133
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=3e-12 Score=140.44 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=80.2
Q ss_pred hcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHH--HHHHHHHHhCCcc
Q 007931 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQA--VASRVAEEMGVKV 123 (584)
Q Consensus 46 ~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~--~~~~~~~~~~~~v 123 (584)
++.|-...+--+++-++.=++--|....||+|||..+...++-... .+..+-++||.--||.+. ....+.+.+|..+
T Consensus 76 ~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v 154 (913)
T PRK13103 76 KRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSV 154 (913)
T ss_pred HHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEE
Confidence 3445555555556666655566788999999999444333322222 455677888888888773 3334556677777
Q ss_pred eeEEeeEeeccCcCCCCCceEEEechHHH-HHHHccCC-------CCCCCcEEEEeCCC
Q 007931 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDP-------LLTKYSVIMVDEAH 174 (584)
Q Consensus 124 g~~vg~~~~~~~~~~~~~~~I~~~T~~~l-l~~l~~~~-------~l~~~~~iIiDE~H 174 (584)
|...+.....+....- .++|+|+|...+ .+.|+.+- ..+++.++||||+|
T Consensus 155 ~~i~~~~~~~err~~Y-~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvD 212 (913)
T PRK13103 155 GIVTPFQPPEEKRAAY-AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVD 212 (913)
T ss_pred EEECCCCCHHHHHHHh-cCCEEEEcccccccchhhccceechhhhcccccceeEechhh
Confidence 7666543333333333 589999999876 22332221 24889999999999
No 134
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.45 E-value=1.5e-12 Score=115.42 Aligned_cols=139 Identities=32% Similarity=0.300 Sum_probs=85.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCcc-CCCeEEEEeCchHHHHHHHHHHHHHHhC--CcceeEEeeEeeccCc-CCCCC
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMG--VKVGEEVGYTIRFEDF-TNKDL 141 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~-~~~~~I~v~~~r~la~~~~~~~~~~~~~--~~vg~~vg~~~~~~~~-~~~~~ 141 (584)
+++++.+|||+|||+++..++...... ..+++++++|.+.++. +..+.+..... ..+....+........ .....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELAN-QVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGK 79 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHH-HHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCC
Confidence 358999999999998887776655432 3456677766665554 44555555443 3333333322111100 01237
Q ss_pred ceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 142 TAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 142 ~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
.+|+++|++.+.+.+..... ...+++||+||+|.-.... ................+++++|||+
T Consensus 80 ~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 80 TDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG-FGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcc-hHHHHHHHHhhCCccceEEEEeccC
Confidence 89999999999888766543 6678999999999322221 1111122333456678899999996
No 135
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.43 E-value=1.4e-12 Score=112.41 Aligned_cols=136 Identities=21% Similarity=0.289 Sum_probs=86.3
Q ss_pred hcCCEEEEEcCCCChHHHH-HHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCC
Q 007931 63 ETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~-ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~ 141 (584)
.+++..+|...+|+|||+. +|.++.+. +..+.+++++.|+|.++. ++.+.+. +.. +.+....-......+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~-i~~~~rvLvL~PTRvva~-em~~aL~---~~~----~~~~t~~~~~~~~g~ 72 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREA-IKRRLRVLVLAPTRVVAE-EMYEALK---GLP----VRFHTNARMRTHFGS 72 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHH-HHTT--EEEEESSHHHHH-HHHHHTT---TSS----EEEESTTSS----SS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHH-HHccCeEEEecccHHHHH-HHHHHHh---cCC----cccCceeeeccccCC
Confidence 3577889999999999974 67666654 567778888888886654 4444332 111 233322221222336
Q ss_pred ceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccCh
Q 007931 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (584)
Q Consensus 142 ~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~ 208 (584)
.-|.++|.+.+.+.+.+...+.++++||+||+|--+..+-...+.++..... ...++|.||||++.
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPPG 138 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPPG 138 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-TT
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCCC
Confidence 7899999999998887755589999999999996566655666666666444 35789999999953
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=1.7e-11 Score=133.26 Aligned_cols=117 Identities=23% Similarity=0.239 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEE
Q 007931 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (584)
Q Consensus 260 ~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vl 339 (584)
..+++..+...+. .+.++||.|.+.+..+.+++.|.+. ++..-.+++.-...|-..|-++-+ .-.|.
T Consensus 412 ~~Aii~ei~~~~~--~gqPVLVgT~SIe~SE~ls~~L~~~---------gi~h~vLNAk~~e~EA~IIa~AG~--~GaVT 478 (925)
T PRK12903 412 WKAVVKEVKRVHK--KGQPILIGTAQVEDSETLHELLLEA---------NIPHTVLNAKQNAREAEIIAKAGQ--KGAIT 478 (925)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCceeecccchhhHHHHHHhCCC--CCeEE
Confidence 4455666666664 4677999999999999999999876 555566776544444444433322 34699
Q ss_pred EeCCCCccccccCCeE--------EEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccC
Q 007931 340 ISTNIAETSLTLEGIV--------YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (584)
Q Consensus 340 vaT~i~e~Gidip~v~--------~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (584)
||||+|++|.||.--. |||-+.. +-|.--=.|-.|||||. .||.+-.+.+
T Consensus 479 IATNMAGRGTDI~Lg~~V~~~GGLhVIgTer------------------heSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 479 IATNMAGRGTDIKLSKEVLELGGLYVLGTDK------------------AESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred EecccccCCcCccCchhHHHcCCcEEEeccc------------------CchHHHHHHHhcccccCCCCCcceEEEe
Confidence 9999999999997322 6665443 34444445999999999 8897544443
No 137
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.42 E-value=1.2e-11 Score=136.86 Aligned_cols=97 Identities=16% Similarity=0.085 Sum_probs=71.6
Q ss_pred EEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCC--------------------------C
Q 007931 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT--------------------------P 332 (584)
Q Consensus 279 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~--------------------------~ 332 (584)
-||=+.+.+.+-.+++.|...... ....+.+..|||..+...|..+++.. .
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~---~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAE---EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccc---cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 477778888888888888766432 22467789999999877776655321 1
Q ss_pred CCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCC
Q 007931 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP 399 (584)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~ 399 (584)
.+...|+|||.+.|.|+|++ .+++| +.+.+..+.+||+||+.|.+.
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred cCCCeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhccccccc
Confidence 25779999999999999987 23333 227789999999999999843
No 138
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.41 E-value=6.3e-12 Score=118.40 Aligned_cols=165 Identities=25% Similarity=0.196 Sum_probs=104.3
Q ss_pred CCchHHHHHHHHHHhcC-CEEEEEcCCCChHHHHHHHHHHhcCccC-CCeEEEEeCchHHHHHHHHHHHHHHhCCcc---
Q 007931 49 LPVYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACTQPRRLAVQAVASRVAEEMGVKV--- 123 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~-~~viv~a~TGsGKT~~ip~~l~~~~~~~-~~~~I~v~~~r~la~~~~~~~~~~~~~~~v--- 123 (584)
.+...+|.+++..+... +++++.+|||||||+.+..++.+..... ..++++++|.+.++.+ +.+++........
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQ-WAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHH-HHHHHHHHhccCCeEE
Confidence 45678888999998888 8999999999999987766666554322 3567888887777775 5555555443211
Q ss_pred eeEE-eeEeec-cCcCCCCCceEEEechHHHHHHHccCC-CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEE
Q 007931 124 GEEV-GYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (584)
Q Consensus 124 g~~v-g~~~~~-~~~~~~~~~~I~~~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi 200 (584)
.... +..... .........+++++|++.+.+.+.... ...++++||+||+|..... .....+...+....+..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCCccceEE
Confidence 1111 111000 000112123999999999999887665 4778999999999954421 12222222222235678999
Q ss_pred EEeccc--ChHHHHHHh
Q 007931 201 ISSATI--EAKSMSAFF 215 (584)
Q Consensus 201 ~~SAT~--~~~~~~~~~ 215 (584)
++|||+ +.......+
T Consensus 165 ~~saT~~~~~~~~~~~~ 181 (201)
T smart00487 165 LLSATPPEEIENLLELF 181 (201)
T ss_pred EEecCCchhHHHHHHHh
Confidence 999999 444444333
No 139
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.36 E-value=6.4e-13 Score=106.29 Aligned_cols=71 Identities=41% Similarity=0.599 Sum_probs=67.8
Q ss_pred CeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHH
Q 007931 309 GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASAR 388 (584)
Q Consensus 309 ~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~ 388 (584)
++.+..+||++++++|..+++.|++|..+|+++|+++++|+|+|++++||.++. +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 788999999999999999999999999999999999999999999999999877 88999999
Q ss_pred HhccccCCC
Q 007931 389 QRAGRAGRV 397 (584)
Q Consensus 389 QR~GRaGR~ 397 (584)
|++||+||.
T Consensus 73 Q~~gR~~R~ 81 (82)
T smart00490 73 QRIGRAGRA 81 (82)
T ss_pred HhhcccccC
Confidence 999999995
No 140
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.35 E-value=1.8e-11 Score=134.06 Aligned_cols=138 Identities=7% Similarity=0.061 Sum_probs=86.5
Q ss_pred EEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhC-CcceeEEeeEe---eccC--cCCCCCc
Q 007931 69 IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG-VKVGEEVGYTI---RFED--FTNKDLT 142 (584)
Q Consensus 69 iv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~-~~vg~~vg~~~---~~~~--~~~~~~~ 142 (584)
+..+-+|||||...-+++... ...++.+|+++|..++.. ++.+++...++ ..+...++... +.+. ....+..
T Consensus 164 i~~~~~GSGKTevyl~~i~~~-l~~Gk~vLvLvPEi~lt~-q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAAT-LRAGRGALVVVPDQRDVD-RLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHH-HHcCCeEEEEecchhhHH-HHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 444556999996555554433 345667899999988876 56667777776 55544443211 1111 1123368
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchh----HHHHHHHHHHHhcCCceEEEEecccChHHHHHH
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTD----ILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d----~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~ 214 (584)
+|+++|-..++-- +.++++|||||-|+-+...+ +-.--+...+....+..+|+.|||+..+.+...
T Consensus 242 ~IViGtRSAvFaP------~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 242 RVVVGTRSAVFAP------VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred cEEEEcceeEEec------cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 9999998765422 78999999999994333222 111112223334568899999999998877653
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.35 E-value=4.2e-10 Score=129.59 Aligned_cols=140 Identities=18% Similarity=0.291 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCc
Q 007931 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (584)
Q Consensus 257 ~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~ 336 (584)
.+|.+.....+..+... .+|++|||+++.+..+.+++.|..... ..++.+.. . ++....|.++.+.|+++..
T Consensus 734 ~~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~-----~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~ 805 (928)
T PRK08074 734 EEYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEE-----LEGYVLLA-Q-GVSSGSRARLTKQFQQFDK 805 (928)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhccc-----ccCceEEe-c-CCCCCCHHHHHHHHHhcCC
Confidence 45666667777666543 467899999999999999999976421 11222222 2 3333456778888888888
Q ss_pred EEEEeCCCCccccccCC--eEEEEecCCccceeecCC-------------CCcccceeeeccHHhHHHhccccCCC--CC
Q 007931 337 KVVISTNIAETSLTLEG--IVYVVDSGFSKQRFYNPI-------------SDIENLVVAPISKASARQRAGRAGRV--RP 399 (584)
Q Consensus 337 ~vlvaT~i~e~Gidip~--v~~VId~g~~k~~~~d~~-------------~~~~~l~~~~~s~~~~~QR~GRaGR~--~~ 399 (584)
.||++|....+|||+|+ ...||-.++.-..--||. ..+..+. .|.....+.|-+||.=|. ..
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~-lP~A~~~lkQg~GRlIRs~~D~ 884 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELS-LPQAVLRFKQGFGRLIRTETDR 884 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhh-hHHHHHHHHhhhhhhcccCCce
Confidence 99999999999999996 477777766421111110 1111111 144566788999999998 45
Q ss_pred cEEEEc
Q 007931 400 GKCYRL 405 (584)
Q Consensus 400 G~~~~l 405 (584)
|..+.+
T Consensus 885 G~v~il 890 (928)
T PRK08074 885 GTVFVL 890 (928)
T ss_pred EEEEEe
Confidence 765533
No 142
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.32 E-value=1.3e-10 Score=127.15 Aligned_cols=125 Identities=22% Similarity=0.235 Sum_probs=81.8
Q ss_pred hcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHH--HHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCC
Q 007931 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGV 121 (584)
Q Consensus 46 ~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~--ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~ 121 (584)
++.+-...+--+++-++.-++--|....||.|||.. +|.++.. . .+..+-+||+..-||.. .+...+.+.+|.
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~a--L-~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNA--L-TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHH--h-cCCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 344555555555666666667789999999999943 3444322 2 45567888999988877 455567788898
Q ss_pred cceeEEeeEeeccCcCCCCCceEEEechHHH-----HHHHccC---CCCCCCcEEEEeCCC
Q 007931 122 KVGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-----LREMMDD---PLLTKYSVIMVDEAH 174 (584)
Q Consensus 122 ~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~l-----l~~l~~~---~~l~~~~~iIiDE~H 174 (584)
.+|...+.....+....- .++|+|+|...+ -+.+... ...+.+.+.|||||+
T Consensus 147 svg~i~~~~~~~err~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNY-LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred ceeeeCCCCChHHHHHhc-CCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 888665533322323333 689999998543 3333211 125778899999998
No 143
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.32 E-value=2.6e-11 Score=113.12 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=87.4
Q ss_pred CCchHHHHHHHHHHhc-------CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCC
Q 007931 49 LPVYKYRTAILYLVET-------HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV 121 (584)
Q Consensus 49 lP~~~~~~~il~~l~~-------~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~ 121 (584)
..++.+|.+++..+.. ++.+++.+|||||||..+-.++.+... ++++++|...+..|.. ..+......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~-~~~~~~~~~ 76 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWY-DEFDDFGSE 76 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHH-HHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHH-HHHHHhhhh
Confidence 3467888888877763 689999999999999766655554432 7888898887776543 333222211
Q ss_pred cceeEEe----------------eEeeccCcCCCCCceEEEechHHHHHHHccCC------------CCCCCcEEEEeCC
Q 007931 122 KVGEEVG----------------YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP------------LLTKYSVIMVDEA 173 (584)
Q Consensus 122 ~vg~~vg----------------~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~------------~l~~~~~iIiDE~ 173 (584)
.. ...+ ..............++.+.|.+.+........ ....+++||+|||
T Consensus 77 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 77 KY-NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp SE-EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hh-hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 11 1110 00011111112267899999999987754311 2456799999999
Q ss_pred CcCccchhHHHHHHHHHHHhcCCceEEEEecccC
Q 007931 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (584)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~ 207 (584)
|. ....... +.+.. .+...+|+||||+.
T Consensus 156 H~-~~~~~~~----~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HH-YPSDSSY----REIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp GC-THHHHHH----HHHHH-SSCCEEEEEESS-S
T ss_pred hh-cCCHHHH----HHHHc-CCCCeEEEEEeCcc
Confidence 94 3333222 22222 56778999999973
No 144
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.25 E-value=6.3e-10 Score=117.60 Aligned_cols=330 Identities=18% Similarity=0.195 Sum_probs=185.7
Q ss_pred chHHHHHHHHHH----hcCCEEEEEcCCCChHHHHHHHHH--HhcCccCCCeEEEEeCchHHHHHHHHHHHHHHh-CCcc
Q 007931 51 VYKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYL--KEAGWADGGRVIACTQPRRLAVQAVASRVAEEM-GVKV 123 (584)
Q Consensus 51 ~~~~~~~il~~l----~~~~~viv~a~TGsGKT~~ip~~l--~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~-~~~v 123 (584)
+..||-+=+.++ ..+-+.|+.-+-|-|||.|--.++ +.......|+.++++|...|. .+...+++.. +..+
T Consensus 168 lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~--NW~~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 168 LRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD--NWMNEFKRFTPSLNV 245 (971)
T ss_pred cchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH--HHHHHHHHhCCCcce
Confidence 445554444444 456679999999999995533222 222222357788888865443 4445555544 4566
Q ss_pred eeEEeeEeecc----CcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCce
Q 007931 124 GEEVGYTIRFE----DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (584)
Q Consensus 124 g~~vg~~~~~~----~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (584)
...+|...... +.......+|+++|.++.++.- +.+ --+.+++||||+| |..+....+. +.+.....+ .
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaH-RiKN~~s~L~--~~lr~f~~~-n 319 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAH-RIKNEKSKLS--KILREFKTD-N 319 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhh-hhcchhhHHH--HHHHHhccc-c
Confidence 66677432111 1112227899999999988651 111 2356899999999 7766554433 222223333 3
Q ss_pred EEEEeccc---Ch------------------HHHHHHhhcCCCCCCCccccc--------------------CCCCCCeE
Q 007931 199 LIISSATI---EA------------------KSMSAFFHARKGRRGLEGVEL--------------------VPRLEPAI 237 (584)
Q Consensus 199 vi~~SAT~---~~------------------~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 237 (584)
-+++|.|+ |. +.|..||........-..+.. .+...-..
T Consensus 320 rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~ 399 (971)
T KOG0385|consen 320 RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELI 399 (971)
T ss_pred eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceee
Confidence 46678886 32 356666665321111000000 00000000
Q ss_pred EEECCccccceEEec-------CCCcchH---HHHHHHHHHHH-------------------------------------
Q 007931 238 LSVEGRGFNVQIHYV-------EEPVSDY---VQAAVSTVLLI------------------------------------- 270 (584)
Q Consensus 238 ~~~~~~~~~v~~~~~-------~~~~~~~---~~~~~~~i~~~------------------------------------- 270 (584)
+.+.-.... +..|. +...... .......+.++
T Consensus 400 iyvgms~mQ-kk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDk 478 (971)
T KOG0385|consen 400 IYVGMSSMQ-KKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDK 478 (971)
T ss_pred EeccchHHH-HHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHH
Confidence 111000000 00000 0000000 00000001000
Q ss_pred ---HhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC---CcEEEEeCCC
Q 007931 271 ---HDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG---KRKVVISTNI 344 (584)
Q Consensus 271 ---~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g---~~~vlvaT~i 344 (584)
.....+.++|||-.=.. +.+.|.+.+ ...++...-+.|+++.++|...++.|... +.-.+++|-+
T Consensus 479 LL~~Lk~~GhRVLIFSQmt~----mLDILeDyc-----~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 479 LLPKLKEQGHRVLIFSQMTR----MLDILEDYC-----MLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred HHHHHHhCCCeEEEeHHHHH----HHHHHHHHH-----HhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 01245667899965333 333343332 11378899999999999999999888643 4557899999
Q ss_pred CccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 345 AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 345 ~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
.+-|||+-..++||- ||+.-+ |-.--++.+|+-|.|...+=++|||+++...+.
T Consensus 550 GGLGINL~aADtVIl--------yDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 550 GGLGINLTAADTVIL--------YDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred cccccccccccEEEE--------ecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 999999999999995 555444 556678889999999999999999999776554
No 145
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=3.6e-09 Score=115.94 Aligned_cols=128 Identities=20% Similarity=0.165 Sum_probs=85.0
Q ss_pred HhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCc
Q 007931 45 QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVK 122 (584)
Q Consensus 45 ~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~ 122 (584)
.++.+-...+--+++-++.=++--|....||-|||..+...++-.++ .+..+-++|...-||.. .....+.+.+|..
T Consensus 78 ~~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL-~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLt 156 (939)
T PRK12902 78 SKRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL-TGKGVHVVTVNDYLARRDAEWMGQVHRFLGLS 156 (939)
T ss_pred HHHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhh-cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCe
Confidence 34566666666667777766677789999999999443322222333 45557788888888776 4555677888888
Q ss_pred ceeEEeeEeeccCcCCCCCceEEEechHHH-----HHHHccC---CCCCCCcEEEEeCCC
Q 007931 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-----LREMMDD---PLLTKYSVIMVDEAH 174 (584)
Q Consensus 123 vg~~vg~~~~~~~~~~~~~~~I~~~T~~~l-----l~~l~~~---~~l~~~~~iIiDE~H 174 (584)
+|...+.....+....- .++|+|+|...+ .+.+..+ ...+.+.+.|||||+
T Consensus 157 vg~i~~~~~~~err~aY-~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 157 VGLIQQDMSPEERKKNY-ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred EEEECCCCChHHHHHhc-CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 88655433222223333 799999999765 4444322 236788999999998
No 146
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.16 E-value=3.8e-09 Score=114.58 Aligned_cols=308 Identities=18% Similarity=0.190 Sum_probs=163.7
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCc
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~ 142 (584)
..+.+.+|.+|.|||||+.+-.++.+..-.++.++++++..+.++. +++.++.... +...+-|....+........
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~-sL~~rf~~~~---l~gFv~Y~d~~~~~i~~~~~ 122 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTK-SLAERFKKAG---LSGFVNYLDSDDYIIDGRPY 122 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHH-HHHHHHhhcC---CCcceeeecccccccccccc
Confidence 3567899999999999998877877653345567777776655544 5666554321 11222233222221111124
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCCCcC--ccch------hHHHHHHHHHHHhcCCceEEEEecccChHHHHHH
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHER--SIST------DILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her--~~~~------d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~ 214 (584)
+-+++..+.|.+.. ...+.++++|||||+-.- .+.. .....+++.+. +..-++|+|-||++... -+|
T Consensus 123 ~rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI--~~ak~VI~~DA~ln~~t-vdF 197 (824)
T PF02399_consen 123 DRLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI--RNAKTVIVMDADLNDQT-VDF 197 (824)
T ss_pred CeEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH--HhCCeEEEecCCCCHHH-HHH
Confidence 55666677776652 445888999999998710 0111 11222233333 33457999999996542 233
Q ss_pred hhcCCCCCCCcccccC------CCCCCeEE------------EECCccccceE-----------EecCCCcchHHHHHHH
Q 007931 215 FHARKGRRGLEGVELV------PRLEPAIL------------SVEGRGFNVQI-----------HYVEEPVSDYVQAAVS 265 (584)
Q Consensus 215 ~~~~~~~~~~~~~~~~------~~~~~~~~------------~~~~~~~~v~~-----------~~~~~~~~~~~~~~~~ 265 (584)
+.........+.+.+. ......++ ..++...+... .........+......
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~ 277 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA 277 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH
Confidence 3322111111100000 00000000 00000000000 0000000112222222
Q ss_pred HHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCC
Q 007931 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (584)
Q Consensus 266 ~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~ 345 (584)
.+ ..+.+|-||++|....+.+++..... ...|..++|.-+.. .+. . =++.+|++=|++.
T Consensus 278 ~L------~~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~~~~---dv~-~--W~~~~VviYT~~i 336 (824)
T PF02399_consen 278 RL------NAGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTDKLE---DVE-S--WKKYDVVIYTPVI 336 (824)
T ss_pred HH------hCCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCCCcc---ccc-c--ccceeEEEEeceE
Confidence 22 35667889999998888888877654 67788888876554 222 1 2468999999999
Q ss_pred ccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHh
Q 007931 346 ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFV 412 (584)
Q Consensus 346 e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~ 412 (584)
..|+++....+=--+++.| +..+ -.+..+..|+.||+-.....+.|.-++.....
T Consensus 337 tvG~Sf~~~HF~~~f~yvk-----~~~~-------gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~~~~ 391 (824)
T PF02399_consen 337 TVGLSFEEKHFDSMFAYVK-----PMSY-------GPDMVSVYQMLGRVRSLLDNEIYVYIDASGAR 391 (824)
T ss_pred EEEeccchhhceEEEEEec-----CCCC-------CCcHHHHHHHHHHHHhhccCeEEEEEeccccc
Confidence 9999987553321122211 1110 23456688999999666777777766655433
No 147
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.12 E-value=1e-07 Score=103.55 Aligned_cols=136 Identities=18% Similarity=0.096 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCC----C
Q 007931 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR----G 334 (584)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~----g 334 (584)
|.+.....+..+... .+|.+||.+++...++.+++.|...+ .+. ....|..+. +...++.|++ |
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~-~l~qg~~~~--~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI--------PAE-IVIQSEKNR--LASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc--------CCC-EEEeCCCcc--HHHHHHHHHHhhcCC
Confidence 555566666665544 56789999999999999999997653 333 344555432 2334444544 5
Q ss_pred CcEEEEeCCCCcccccc----------CCeEEEEecCCccceeecCC--------CCcccceeeeccHHhHHHhccccCC
Q 007931 335 KRKVVISTNIAETSLTL----------EGIVYVVDSGFSKQRFYNPI--------SDIENLVVAPISKASARQRAGRAGR 396 (584)
Q Consensus 335 ~~~vlvaT~i~e~Gidi----------p~v~~VId~g~~k~~~~d~~--------~~~~~l~~~~~s~~~~~QR~GRaGR 396 (584)
...||++|+.+-+|||+ +.++.||-.-+.-.. -||- .|-..+...|-..-.+.|-+||.=|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 78999999999999999 347777665554221 1221 1112222235556677899999988
Q ss_pred C--C--CcEEEEccC
Q 007931 397 V--R--PGKCYRLYT 407 (584)
Q Consensus 397 ~--~--~G~~~~l~~ 407 (584)
. . .|....|=+
T Consensus 601 ~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 601 HPDMPQNRRIHMLDG 615 (636)
T ss_pred cCCCcCceEEEEEeC
Confidence 8 3 576555443
No 148
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.08 E-value=3.4e-09 Score=117.37 Aligned_cols=352 Identities=19% Similarity=0.194 Sum_probs=201.0
Q ss_pred CCchHHHHHHHHHH----hcCCEEEEEcCCCChHHHHHHHHHH--hcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCc
Q 007931 49 LPVYKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYLK--EAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK 122 (584)
Q Consensus 49 lP~~~~~~~il~~l----~~~~~viv~a~TGsGKT~~ip~~l~--~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~ 122 (584)
+-+..+|-+=+.++ ..++++|+.-+-|-|||.|--.++. .....-.|+.++|+|..-+.+ +.+.+....+.+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~--W~~ef~~w~~mn 446 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA--WEREFETWTDMN 446 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH--HHHHHHHHhhhc
Confidence 55667776655555 4678999999999999954433332 122224577888998776654 334444444555
Q ss_pred ceeEEeeE----------eeccCcCCCCCceEEEechHHHHHHHccCCCCC--CCcEEEEeCCCcCccchhHHHHHHHHH
Q 007931 123 VGEEVGYT----------IRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLT--KYSVIMVDEAHERSISTDILLGLLKKI 190 (584)
Q Consensus 123 vg~~vg~~----------~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~--~~~~iIiDE~Her~~~~d~l~~~l~~~ 190 (584)
+...+|.. .-.......-+.+++++|.++++.- ...|. ...+++||||| |..+.+..+.- .+
T Consensus 447 ~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD---k~~L~~i~w~~~~vDeah-rLkN~~~~l~~--~l 520 (1373)
T KOG0384|consen 447 VIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD---KAELSKIPWRYLLVDEAH-RLKNDESKLYE--SL 520 (1373)
T ss_pred eeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc---HhhhccCCcceeeecHHh-hcCchHHHHHH--HH
Confidence 55555522 1111111111578999999998642 22233 35789999999 77655443222 12
Q ss_pred HHhcCCceEEEEeccc---ChHHHHHHhhcC-CCCCC-Cc----------------------c-----cc-----cCCCC
Q 007931 191 QRCRSDLRLIISSATI---EAKSMSAFFHAR-KGRRG-LE----------------------G-----VE-----LVPRL 233 (584)
Q Consensus 191 ~~~~~~~~vi~~SAT~---~~~~~~~~~~~~-~~~~~-~~----------------------~-----~~-----~~~~~ 233 (584)
.....+- -+++|.|+ +...+...+.-. |.+-. +. + +. ..+..
T Consensus 521 ~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k 599 (1373)
T KOG0384|consen 521 NQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPK 599 (1373)
T ss_pred HHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCC
Confidence 2222233 45678888 455554333110 11100 00 0 00 01111
Q ss_pred CCeEEEECCccccceEEec-------------------------------------CCCc-c----hHHH----HHHHHH
Q 007931 234 EPAILSVEGRGFNVQIHYV-------------------------------------EEPV-S----DYVQ----AAVSTV 267 (584)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~-------------------------------------~~~~-~----~~~~----~~~~~i 267 (584)
.-.++.++-....- .+|. .... . ++.+ .....+
T Consensus 600 ~E~IlrVels~lQk-~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~l 678 (1373)
T KOG0384|consen 600 EETILRVELSDLQK-QYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQAL 678 (1373)
T ss_pred cceEEEeehhHHHH-HHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHH
Confidence 22233333211000 0000 0000 0 0000 111111
Q ss_pred HH------------HHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCC--
Q 007931 268 LL------------IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR-- 333 (584)
Q Consensus 268 ~~------------~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~-- 333 (584)
+. ......+.+||||-.=.....-++++|... ++..--+.|++..+-|+..++.|..
T Consensus 679 I~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r---------~ypfQRLDGsvrgelRq~AIDhFnap~ 749 (1373)
T KOG0384|consen 679 IQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR---------GYPFQRLDGSVRGELRQQAIDHFNAPD 749 (1373)
T ss_pred HHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc---------CCcceeccCCcchHHHHHHHHhccCCC
Confidence 00 012345678999988888888888888765 7888889999999999999988853
Q ss_pred -CCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHh
Q 007931 334 -GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFV 412 (584)
Q Consensus 334 -g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~ 412 (584)
...-.|+||-+.+-|||+-..+.||- ||+.-+ |-.--++.-|+-|.|-...=.+|||+|+..++
T Consensus 750 SddFvFLLSTRAGGLGINLatADTVII--------FDSDWN-------PQNDLQAqARaHRIGQkk~VnVYRLVTk~TvE 814 (1373)
T KOG0384|consen 750 SDDFVFLLSTRAGGLGINLATADTVII--------FDSDWN-------PQNDLQAQARAHRIGQKKHVNVYRLVTKNTVE 814 (1373)
T ss_pred CCceEEEEecccCcccccccccceEEE--------eCCCCC-------cchHHHHHHHHHhhcccceEEEEEEecCCchH
Confidence 35679999999999999998888885 444433 33444555677777776777899999999887
Q ss_pred hhCCCCCCCcccccchhHHHHHHHh
Q 007931 413 KEIPAEGIPEMQRSNLVSCVIQLKA 437 (584)
Q Consensus 413 ~~~~~~~~pei~r~~l~~~~L~l~~ 437 (584)
..+-+. .-...-|+..++|.-.
T Consensus 815 eEilER---Ak~KmvLD~aVIQ~m~ 836 (1373)
T KOG0384|consen 815 EEILER---AKLKMVLDHAVIQRMD 836 (1373)
T ss_pred HHHHHH---HHHHhhhHHHHHHhhc
Confidence 732211 1122345666666554
No 149
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.97 E-value=1.3e-07 Score=100.90 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=93.8
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCc--EEEEeCCCCccccccC
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR--KVVISTNIAETSLTLE 352 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~--~vlvaT~i~e~Gidip 352 (584)
.+..+|+|..++....-+...|... .++..+-+.|..+...|...++.|.++.. -.|++|-+.+-|+|+-
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLT 616 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLT 616 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccc
Confidence 3457999999999888777777642 48999999999999999999999987753 3678899999999998
Q ss_pred CeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHh
Q 007931 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFV 412 (584)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~ 412 (584)
+.+-||- |||.-+ |.+-.++.-|+=|.|-.+.=.+|||.+....+
T Consensus 617 gAnRVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 617 GANRVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred cCceEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 7777774 677665 66677888899999988888899999865443
No 150
>COG4889 Predicted helicase [General function prediction only]
Probab=98.93 E-value=1.1e-09 Score=116.81 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=75.8
Q ss_pred CEEEEeCcHHHHHHHHHHHHHHhh----hccCCCCCeE--EEEecCCCCHHHHhccc---CCCCCCCcEEEEeCCCCccc
Q 007931 278 DILVFLTGQDDIDATIQLLTEEAR----TSKKNSSGLI--ILPLYSGLSRAEQEQVF---SPTPRGKRKVVISTNIAETS 348 (584)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~----~~~~~~~~~~--v~~lh~~l~~~~r~~i~---~~~~~g~~~vlvaT~i~e~G 348 (584)
..+-||.+.+.-..+++.+..... ++..+..++. +--..|.|...+|...+ ..|...+.|||-.--++..|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 467788887776666655543322 1122223444 44556889888886544 35678899999888999999
Q ss_pred cccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEE
Q 007931 349 LTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKC 402 (584)
Q Consensus 349 idip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~ 402 (584)
||+|..+-||. |||+. |.-+.+|-+||+.|..+|+-
T Consensus 542 VDVPaLDsViF--------f~pr~----------smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRS----------SMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred CCccccceEEE--------ecCch----------hHHHHHHHHHHHHHhCcCCc
Confidence 99999999996 66655 45566799999999988864
No 151
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.71 E-value=2.4e-06 Score=86.84 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=64.6
Q ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC-CcE-EEEeCCCCcccccc
Q 007931 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTL 351 (584)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-~~~-vlvaT~i~e~Gidi 351 (584)
.++.+.+||+.-..-.+.+...+.+. ++.-.-+.|..+..+|....+.|... +.+ -+++-..+..|+|+
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~ 560 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL 560 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee
Confidence 45578999999888888777777765 77788899999999999998888754 333 46677889999999
Q ss_pred CCeEEEEecCC
Q 007931 352 EGIVYVVDSGF 362 (584)
Q Consensus 352 p~v~~VId~g~ 362 (584)
..-+.||..-+
T Consensus 561 tAa~~VVFaEL 571 (689)
T KOG1000|consen 561 TAASVVVFAEL 571 (689)
T ss_pred eccceEEEEEe
Confidence 99999997655
No 152
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.68 E-value=3.9e-06 Score=91.82 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=73.1
Q ss_pred eCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC--C-cEEEEeCCCCccccccCCeEEEEe
Q 007931 283 LTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--K-RKVVISTNIAETSLTLEGIVYVVD 359 (584)
Q Consensus 283 ~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g--~-~~vlvaT~i~e~Gidip~v~~VId 359 (584)
+........+.+.+.++ .++.+..+||.++..+|+.+++.|.+. . .-.+.+|-+.+.||++=+..-||-
T Consensus 601 Isny~~tldl~e~~~~~--------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil 672 (776)
T KOG0390|consen 601 ISNYTQTLDLFEQLCRW--------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL 672 (776)
T ss_pred eccHHHHHHHHHHHHhh--------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE
Confidence 34444555555555444 288999999999999999999999643 2 345677788999999987777775
Q ss_pred cCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHh
Q 007931 360 SGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFV 412 (584)
Q Consensus 360 ~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~ 412 (584)
||+.-+ |.--.+++-|+=|-|-.++-..|+|++....+
T Consensus 673 --------~D~dWN-------Pa~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 673 --------FDPDWN-------PAVDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred --------eCCCCC-------chhHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 555544 33344444444444555777889999865443
No 153
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.66 E-value=1.4e-06 Score=97.00 Aligned_cols=117 Identities=22% Similarity=0.293 Sum_probs=89.2
Q ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC-CcEEE-EeCCCCccccccCC
Q 007931 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRKVV-ISTNIAETSLTLEG 353 (584)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-~~~vl-vaT~i~e~Gidip~ 353 (584)
..++||||.=+..+.-+.+.|.+. ..+.+.-..+.|+.++.+|.++.+.|.++ .++|+ ++|-+.+-|+|+-+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 357999999998888887776554 33567777899999999999999999988 67765 57789999999999
Q ss_pred eEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 354 v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
.+.||... --|||.+. -+++-|+-|.|..+-=.+|||+++...++
T Consensus 1414 ADTVVFvE----HDWNPMrD-----------LQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1414 ADTVVFVE----HDWNPMRD-----------LQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred CceEEEEe----cCCCchhh-----------HHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 99999532 13443332 34555666666656667999999887765
No 154
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.55 E-value=3.5e-08 Score=108.10 Aligned_cols=191 Identities=16% Similarity=0.159 Sum_probs=112.6
Q ss_pred cccccCCCCCCccc--hhhHHHHhcCCCchHHHHHHHHHHhc----------------CCEEEEEcCCCChHHHHHHHHH
Q 007931 25 LSSSLSSASSIGYG--YASIEKQRQRLPVYKYRTAILYLVET----------------HATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 25 ~~~~~~~l~~~~~~--~~~l~~~~~~lP~~~~~~~il~~l~~----------------~~~viv~a~TGsGKT~~ip~~l 86 (584)
.+.||+.+-+.++. ..++.. ...+|+...+...++.+.. +.+.++-+|||+|||..+...+
T Consensus 886 ~~~s~~~~il~~~~~~~t~ll~-l~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~ 964 (1230)
T KOG0952|consen 886 YPLSFQHLILPDNEPPLTELLD-LRPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAI 964 (1230)
T ss_pred ccccccceeccccccccccccc-cCCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHH
Confidence 34445554444332 222222 2567777777666666643 2346788999999995544333
Q ss_pred Hhc-CccCCCeEEEEeCchHHHHHHHHH---HHHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHc---cC
Q 007931 87 KEA-GWADGGRVIACTQPRRLAVQAVAS---RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMM---DD 159 (584)
Q Consensus 87 ~~~-~~~~~~~~I~v~~~r~la~~~~~~---~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~---~~ 159 (584)
... ...++.++++++|-.++....+.+ +.-.. |.+++...|.... +-.... .+++++.||+......+ ..
T Consensus 965 ~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~p-d~~~v~-~~~~~ittpek~dgi~Rsw~~r 1041 (1230)
T KOG0952|consen 965 FRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTP-DVKAVR-EADIVITTPEKWDGISRSWQTR 1041 (1230)
T ss_pred HHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCC-Chhhee-cCceEEcccccccCccccccch
Confidence 222 223457889999999887653332 22212 4445444442221 112222 68999999998765544 34
Q ss_pred CCCCCCcEEEEeCCCcCccchhHHHHHH----HH-HHHhcCCceEEEEeccc-ChHHHHHHhhcCC
Q 007931 160 PLLTKYSVIMVDEAHERSISTDILLGLL----KK-IQRCRSDLRLIISSATI-EAKSMSAFFHARK 219 (584)
Q Consensus 160 ~~l~~~~~iIiDE~Her~~~~d~l~~~l----~~-~~~~~~~~~vi~~SAT~-~~~~~~~~~~~~~ 219 (584)
..+.+++.+|+||.|.-+.+....+.++ .. -....+.+|++++|--+ ++.++++|++..+
T Consensus 1042 ~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~ 1107 (1230)
T KOG0952|consen 1042 KYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKD 1107 (1230)
T ss_pred hhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCC
Confidence 4589999999999994443322222211 11 11134567888877555 9999999998766
No 155
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.52 E-value=4.9e-06 Score=95.86 Aligned_cols=133 Identities=23% Similarity=0.226 Sum_probs=75.0
Q ss_pred CEEEEEcCCCChHH---HHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcce-eEEeeEeeccCcCCCCC
Q 007931 66 ATTIIVGETGSGKT---TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG-EEVGYTIRFEDFTNKDL 141 (584)
Q Consensus 66 ~~viv~a~TGsGKT---~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg-~~vg~~~~~~~~~~~~~ 141 (584)
+.-+|.--|||||| +-+...+++. .....+++||-.+.|-.| ....+........- .................
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q-~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQ-TSDEFQSFGKVAFNDPKAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHH-HHHHHHHHHHhhhhcccccCHHHHHHHHhcCC
Confidence 35899999999999 2234445544 244556777766666655 33322221111100 00000000001111115
Q ss_pred ceEEEechHHHHHHHccC-C--CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 142 TAIKFLTDGVLLREMMDD-P--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 142 ~~I~~~T~~~ll~~l~~~-~--~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
..|+++|-+.+-...... . .-.+=-+||+|||| |+-.+... ..++. ..++...+++|.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~-~~~~~---~~~~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELA-KLLKK---ALKKAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHH-HHHHH---HhccceEEEeeCCc
Confidence 689999999998777554 1 23344578999999 77655433 33333 33457899999999
No 156
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.48 E-value=1.5e-06 Score=81.61 Aligned_cols=128 Identities=24% Similarity=0.282 Sum_probs=82.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~ 145 (584)
++++++||||+||||.+..+............++.+-+.|+++.+..+.+++.++..+.. . ....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~----~~~~------ 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----A----RTES------ 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----S----STTS------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch-----h----hcch------
Confidence 468999999999999888777655444444558888899999999999999988865421 0 0000
Q ss_pred EechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEecccChHHH
Q 007931 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSM 211 (584)
Q Consensus 146 ~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~~~~~~ 211 (584)
.|..+++........+++++|+||-+. |+........-++.+.. ..+.-.++.+|||...+.+
T Consensus 67 --~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 67 --DPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp --CHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred --hhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 233333221111113468999999998 66655555555555444 4566678889999955543
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.41 E-value=6.7e-06 Score=83.54 Aligned_cols=90 Identities=21% Similarity=0.219 Sum_probs=67.1
Q ss_pred CCCCeEEEEecCCCCHHHHhcccCCCCCC--CcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeecc
Q 007931 306 NSSGLIILPLYSGLSRAEQEQVFSPTPRG--KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIS 383 (584)
Q Consensus 306 ~~~~~~v~~lh~~l~~~~r~~i~~~~~~g--~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s 383 (584)
...++.+..+-|+|++..|...++.|.+. .+-.|++-...+..+|+-....|...+. |-.
T Consensus 659 ~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP------------------WWN 720 (791)
T KOG1002|consen 659 GKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP------------------WWN 720 (791)
T ss_pred hccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc------------------ccc
Confidence 44588999999999999999999999875 3445666677777788888888876443 444
Q ss_pred HH---hHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 384 KA---SARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 384 ~~---~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
.+ ++.-|+-|.|..+|=++++++-+...+.
T Consensus 721 paVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~ 753 (791)
T KOG1002|consen 721 PAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEE 753 (791)
T ss_pred HHHHhhhhhhHHhhcCccceeEEEeehhccHHH
Confidence 43 3445677777778889999988766554
No 158
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.39 E-value=4.2e-06 Score=93.38 Aligned_cols=119 Identities=23% Similarity=0.254 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcE
Q 007931 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (584)
Q Consensus 258 ~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~ 337 (584)
....+++..+...+. .+.+|||-+.|.+..+.+++.|... ++.--.+++.....|-.-|-++-+.| .
T Consensus 612 eK~~Aii~ei~~~~~--~GrPVLVGT~SVe~SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG~~G--a 678 (1112)
T PRK12901 612 EKYNAVIEEITELSE--AGRPVLVGTTSVEISELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAGQPG--T 678 (1112)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEeCcHHHHHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcCCCC--c
Confidence 334667777777775 4667999999999999999999876 44444555554455555555544444 5
Q ss_pred EEEeCCCCccccccC--------CeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccC
Q 007931 338 VVISTNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (584)
Q Consensus 338 vlvaT~i~e~Gidip--------~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (584)
|-||||+|++|-||. +=-+||-+.. +-|..-=.|-.|||||. .||.+-.+++
T Consensus 679 VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTer------------------heSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 679 VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTER------------------HESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred EEEeccCcCCCcCcccchhhHHcCCCEEEEccC------------------CCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 999999999999987 2235554333 55666667999999999 8897544444
No 159
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.34 E-value=4.9e-06 Score=89.15 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=88.0
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCC--cEEEEeCCCCccccccC
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK--RKVVISTNIAETSLTLE 352 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~--~~vlvaT~i~e~Gidip 352 (584)
.+.+||+|-.=.....-+...|... ++.-.-+.|...-.+|+.+++.|...+ .-.|++|-+.+-|||+-
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l---------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt 846 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTL---------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLT 846 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhc---------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccc
Confidence 3467999965443333333333332 788899999999999999999996543 45789999999999999
Q ss_pred CeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
..++||-.+. .|| |..--++.-|+-|.|.++|=.+|+|+++...+.
T Consensus 847 ~An~VIihD~----dFN-----------P~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 847 CANTVIIHDI----DFN-----------PYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred ccceEEEeec----CCC-----------CcccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 9999986554 234 555567778999999999999999999987665
No 160
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.26 E-value=2.3e-05 Score=79.58 Aligned_cols=129 Identities=22% Similarity=0.244 Sum_probs=94.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcC--ccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~--~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~ 142 (584)
++++.++||||.||||.+..+..... .....-.|+-+-+-|+.|....+.+++-+|+++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 78999999999999987776655444 223334588889999999999999999887654
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCc-eEEEEecccChHHHHHHhhc
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL-RLIISSATIEAKSMSAFFHA 217 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~-~vi~~SAT~~~~~~~~~~~~ 217 (584)
.++-+|.-|...+.. +.++++|.||=+- |+........-++.+.....++ ..+.+|||...+++.+.+..
T Consensus 264 -~vv~~~~el~~ai~~---l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 264 -EVVYSPKELAEAIEA---LRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred -EEecCHHHHHHHHHH---hhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 345567777666543 6788999999999 7766666666666666544444 45779999977766665543
No 161
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.25 E-value=3.9e-06 Score=84.73 Aligned_cols=132 Identities=15% Similarity=0.099 Sum_probs=66.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH---hcCcc-CCCeEEEEeCchHHHHHHHHHHHHHHhC---CcceeEEeeE-eeccC
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK---EAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMG---VKVGEEVGYT-IRFED 135 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~---~~~~~-~~~~~I~v~~~r~la~~~~~~~~~~~~~---~~vg~~vg~~-~~~~~ 135 (584)
..+-.++.-++|+|||.++-.++. ..... ...++++++|+ .+.. ++...+.+... ..+....|.. .....
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~-~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLS-QWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHH-HHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhh-hhhhhhcccccccccccccccccccccccc
Confidence 456799999999999955544433 22111 11247888888 4443 45555555552 2222222211 11111
Q ss_pred cCCCCCceEEEechHHHH--------HHHccCCCCCCCcEEEEeCCCcC-ccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 136 FTNKDLTAIKFLTDGVLL--------REMMDDPLLTKYSVIMVDEAHER-SISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 136 ~~~~~~~~I~~~T~~~ll--------~~l~~~~~l~~~~~iIiDE~Her-~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
.......+++++|.+.+. ..+. -.++++||+||+|.- +..+.... .+.... ....+++|||+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~----~~~~~~vIvDEaH~~k~~~s~~~~----~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLK----QIKWDRVIVDEAHRLKNKDSKRYK----ALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHH----TSEEEEEEETTGGGGTTTTSHHHH----HHHCCC-ECEEEEE-SS-
T ss_pred ccccccceeeeccccccccccccccccccc----cccceeEEEecccccccccccccc----cccccc-cceEEeecccc
Confidence 222236889999999988 1222 134899999999943 22222222 222222 55678899999
No 162
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.19 E-value=1.3e-06 Score=76.55 Aligned_cols=115 Identities=22% Similarity=0.359 Sum_probs=63.6
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCcc----CCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCC
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWA----DGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~----~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~ 138 (584)
++++.++|.||+|+|||+++-.+....... ....++++..+..-....+.+.++..++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356789999999999999988777654211 134456665554444557777777777654321
Q ss_pred CCCceEEEechHHH----HHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 139 KDLTAIKFLTDGVL----LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 139 ~~~~~I~~~T~~~l----l~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
-.+...+ .+.+... ...+|||||+|... . ...+..++.+.. ..++++|+++.
T Consensus 69 -------~~~~~~l~~~~~~~l~~~----~~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G~ 124 (131)
T PF13401_consen 69 -------RQTSDELRSLLIDALDRR----RVVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVGT 124 (131)
T ss_dssp -------TS-HHHHHHHHHHHHHHC----TEEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEES
T ss_pred -------cCCHHHHHHHHHHHHHhc----CCeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEEC
Confidence 1133333 3333322 22799999999532 3 444444444444 56777666543
No 163
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.18 E-value=0.00061 Score=77.03 Aligned_cols=123 Identities=20% Similarity=0.292 Sum_probs=73.7
Q ss_pred CCCchHHHHHHHHHHhc-CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeE
Q 007931 48 RLPVYKYRTAILYLVET-HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~-~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~ 126 (584)
...+...|.+.+..+.. +++++|+|+.|+||||++-.+.... ...+.++++++|+-+ ++..+ .+..|..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~-~~~g~~V~~~ApTg~-Aa~~L----~~~~g~~---- 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAW-EAAGYRVIGAALSGK-AAEGL----QAESGIE---- 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH-HhCCCeEEEEeCcHH-HHHHH----HhccCCc----
Confidence 34566777777777665 6899999999999998876543221 223455677776643 33322 2222221
Q ss_pred EeeEeeccCcCCCCCceEEEechHHHHHHHccC-CCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~-~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
-.|-..++..+..+ ..+.+.++|||||+- .++...+..+++... ..+.|+|++.
T Consensus 420 -------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~--~~~~kliLVG 474 (744)
T TIGR02768 420 -------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAE--EAGAKVVLVG 474 (744)
T ss_pred -------------------eeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEEC
Confidence 11333333222222 236788999999998 566666666665443 2467787776
No 164
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=3.7e-05 Score=79.43 Aligned_cols=130 Identities=22% Similarity=0.289 Sum_probs=79.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCcc---CCCe-EEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCC
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWA---DGGR-VIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~---~~~~-~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~ 140 (584)
..+++++||||+||||.+..+....... .+.+ .++-+-+-+.++....+.+++.+|.++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~---------------- 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK---------------- 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----------------
Confidence 3589999999999998887665433211 2233 3555666677777666666666665431
Q ss_pred CceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCC-ceEEEEecccChHHHHHHhhcC
Q 007931 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSD-LRLIISSATIEAKSMSAFFHAR 218 (584)
Q Consensus 141 ~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~-~~vi~~SAT~~~~~~~~~~~~~ 218 (584)
..-++..+...+.. +.++++||||++. |.......+.-++.+.. ..++ -.++.+|||...+.+.+.|...
T Consensus 238 ----~~~~~~~l~~~L~~---~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 238 ----AIESFKDLKEEITQ---SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred ----eeCcHHHHHHHHHH---hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 11133444443322 4679999999999 66433223333344333 3333 4678899999877777766543
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.14 E-value=2.9e-05 Score=85.48 Aligned_cols=125 Identities=23% Similarity=0.261 Sum_probs=75.8
Q ss_pred hcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCC
Q 007931 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGV 121 (584)
Q Consensus 46 ~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~--~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~ 121 (584)
++.+-.+.+.-+++-++.-+.--|.-.-||=|||. .+|.++. ++ .+..+-++|.---||.. .....+-+.+|.
T Consensus 74 ~Rvlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~yln--aL-~gkgVhvVTvNdYLA~RDae~m~~l~~~LGl 150 (822)
T COG0653 74 KRVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLN--AL-AGKGVHVVTVNDYLARRDAEWMGPLYEFLGL 150 (822)
T ss_pred HHhcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHH--hc-CCCCcEEeeehHHhhhhCHHHHHHHHHHcCC
Confidence 34455556666778888878878999999999993 3444443 23 33445556655444443 444456677787
Q ss_pred cceeEEeeEeeccCcCCCCCceEEEechHHH-----HHHHc---cCCCCCCCcEEEEeCCC
Q 007931 122 KVGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-----LREMM---DDPLLTKYSVIMVDEAH 174 (584)
Q Consensus 122 ~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~l-----l~~l~---~~~~l~~~~~iIiDE~H 174 (584)
.+|....+....++...- .++|+|+|...| -.-+. .+.......+-|+||++
T Consensus 151 svG~~~~~m~~~ek~~aY-~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 151 SVGVILAGMSPEEKRAAY-ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred ceeeccCCCChHHHHHHH-hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 777666555444444444 689999998554 11111 11234556677777766
No 166
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.12 E-value=1.2e-05 Score=75.58 Aligned_cols=122 Identities=25% Similarity=0.349 Sum_probs=64.1
Q ss_pred hHHHHHHHHHH-hc-CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEee
Q 007931 52 YKYRTAILYLV-ET-HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (584)
Q Consensus 52 ~~~~~~il~~l-~~-~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~ 129 (584)
...|.+++..+ .+ ++.++|+|+.|+||||.+-.+.. .....+.++++++|+...+.. +.+ ..+...
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~-~~~~~g~~v~~~apT~~Aa~~-L~~----~~~~~a------ 70 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAE-ALEAAGKRVIGLAPTNKAAKE-LRE----KTGIEA------ 70 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHH-HHHHTT--EEEEESSHHHHHH-HHH----HHTS-E------
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHH-HHHhCCCeEEEECCcHHHHHH-HHH----hhCcch------
Confidence 34566666666 43 35899999999999987754332 222244667888888755443 333 333221
Q ss_pred EeeccCcCCCCCceEEEechHHHHHHHcc-----CCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMD-----DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 130 ~~~~~~~~~~~~~~I~~~T~~~ll~~l~~-----~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
.|-..++..... .+.+.+.++|||||+- .++...+..+++.+.. .+.|+|++--
T Consensus 71 -----------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 71 -----------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp -----------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred -----------------hhHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 111111111100 0014567899999998 4555555555554433 3668887765
Q ss_pred cc
Q 007931 205 TI 206 (584)
Q Consensus 205 T~ 206 (584)
+-
T Consensus 130 ~~ 131 (196)
T PF13604_consen 130 PN 131 (196)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 167
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=6e-05 Score=76.75 Aligned_cols=130 Identities=18% Similarity=0.275 Sum_probs=73.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
+++.++||||+||||.+..+..... ..+.++ ++-+-+.++++.+..+..++..++.+ +
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv--------------------~ 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV--------------------I 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE--------------------E
Confidence 5789999999999988877665432 233333 44444556655544333444333221 2
Q ss_pred EEechHHHHHHHccCCCCCCCcEEEEeCCCcCccch-hHHHHHHHHHHHhcCCceEEEEecccChHH---HHHHhhc
Q 007931 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIST-DILLGLLKKIQRCRSDLRLIISSATIEAKS---MSAFFHA 217 (584)
Q Consensus 145 ~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~-d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~---~~~~~~~ 217 (584)
...++..+.+.+..-..-.++++|+||-+- |.... +.+..+.+.+....++-.++.+|||....+ +.+.|..
T Consensus 301 v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~ 376 (436)
T PRK11889 301 AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD 376 (436)
T ss_pred ecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC
Confidence 233666666554322112368999999998 55433 344444444434455555677999884443 4444443
No 168
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=3.8e-05 Score=78.65 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=77.1
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCC-CeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCC
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADG-GRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~-~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~ 140 (584)
.++.+++++||||+||||.+..+........+ .++ ++.+-+-++.+.+..+.+++.++..+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~---------------- 198 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH---------------- 198 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----------------
Confidence 45779999999999999998877655432222 233 344445566666666666766664331
Q ss_pred CceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHh-cCCceEEEEecccChHHHH
Q 007931 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC-RSDLRLIISSATIEAKSMS 212 (584)
Q Consensus 141 ~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~-~~~~~vi~~SAT~~~~~~~ 212 (584)
.+.+++.+...+. .+.+.++|+||++- +....+.+...+..+... .+.-+++++|||...+.+.
T Consensus 199 ----~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 199 ----AVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ----ecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 1223333332222 14567999999998 555445566666655432 2345688899999555443
No 169
>PRK10536 hypothetical protein; Provisional
Probab=98.08 E-value=1.7e-05 Score=76.34 Aligned_cols=57 Identities=25% Similarity=0.186 Sum_probs=42.6
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
--|....|...+.++.+++.+++.||+|||||+++-.+..+......-..|+++-|.
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 357888999999999999999999999999998877666543322233446665554
No 170
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.98 E-value=0.0022 Score=73.86 Aligned_cols=125 Identities=22% Similarity=0.235 Sum_probs=74.8
Q ss_pred CCCchHHHHHHHHHHhc-CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeE
Q 007931 48 RLPVYKYRTAILYLVET-HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~-~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~ 126 (584)
.+.+...|.+.+..+.. +++++|+|+.|+||||.+-.+ .+.....+..+++++|+- .++..+. +..|..
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~-~~~~e~~G~~V~~~ApTG-kAA~~L~----e~tGi~---- 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVA-REAWEAAGYEVRGAALSG-IAAENLE----GGSGIA---- 413 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHH-HHHHHHcCCeEEEecCcH-HHHHHHh----hccCcc----
Confidence 45677777777776665 678999999999999876533 222222345566666654 3433322 211111
Q ss_pred EeeEeeccCcCCCCCceEEEechHHHHHHHccC-CCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~-~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
-.|-..++..+..+ ..+...++|||||+- .+++..+..+++... ..+.|+|++.=+
T Consensus 414 -------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD~ 470 (988)
T PRK13889 414 -------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGDP 470 (988)
T ss_pred -------------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECCH
Confidence 11333443322222 236678999999998 566666666665443 346788887755
No 171
>PRK14974 cell division protein FtsY; Provisional
Probab=97.91 E-value=0.00012 Score=74.29 Aligned_cols=121 Identities=24% Similarity=0.290 Sum_probs=68.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v-~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
.+++++|++|+||||.+..+..... ..+.+++++ +-+.+.++....+..+..+|..+.. + ....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~----- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLK-KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGA----- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCC-----
Confidence 5789999999999988776654321 233344333 3445566655555566666654321 0 0001
Q ss_pred EEechHH-HHHHHccCCCCCCCcEEEEeCCCcCcc-chhHHHHHHHHHHH-hcCCceEEEEecccC
Q 007931 145 KFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSI-STDILLGLLKKIQR-CRSDLRLIISSATIE 207 (584)
Q Consensus 145 ~~~T~~~-ll~~l~~~~~l~~~~~iIiDE~Her~~-~~d~l~~~l~~~~~-~~~~~~vi~~SAT~~ 207 (584)
.|.. +.+.+.. ....++++||||.++ |.. +.+.+.. ++.+.+ ..++..+++++||..
T Consensus 206 ---dp~~v~~~ai~~-~~~~~~DvVLIDTaG-r~~~~~~lm~e-L~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 206 ---DPAAVAYDAIEH-AKARGIDVVLIDTAG-RMHTDANLMDE-LKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred ---CHHHHHHHHHHH-HHhCCCCEEEEECCC-ccCCcHHHHHH-HHHHHHhhCCceEEEeeccccc
Confidence 1111 1111110 012467899999999 554 4444444 444433 567888899999883
No 172
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.91 E-value=0.00024 Score=74.83 Aligned_cols=126 Identities=22% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcC-ccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAG-WADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~-~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~ 142 (584)
+++++++||||+||||.+..+..... ...+.++ ++-+-+.+.++.......++.+++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-------------------
Confidence 56899999999999988877665443 2233344 44444556655544444555554322
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-h-cCCceEEEEecccChHHHHHH
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-C-RSDLRLIISSATIEAKSMSAF 214 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~-~~~~~vi~~SAT~~~~~~~~~ 214 (584)
....++..+...+.. +.++++||||.+- |..........++.+.. . .+.-..+++|||.....+.+.
T Consensus 282 -~~~~~~~~l~~~l~~---~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 282 -EVVYDPKELAKALEQ---LRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred -EccCCHHhHHHHHHH---hCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 112234444444432 3468999999997 44332223333333333 2 233457889999966655544
No 173
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=0.00013 Score=74.11 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=77.4
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCC
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~ 141 (584)
..+++++++||||+||||.+..+...... .+.++ ++-+-+-+.++....+..++..+..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~-~g~~V~lItaDtyR~gAveQLk~yae~lgvpv------------------ 264 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYADKLDVEL------------------ 264 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCccCccHHHHHHHHhhcCCCCE------------------
Confidence 35678999999999999888776654322 23333 45555666665544444444443321
Q ss_pred ceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEecccChHHHHHHhh
Q 007931 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAFFH 216 (584)
Q Consensus 142 ~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~~~~~~~~~~~ 216 (584)
.+..+|..+.+.+.......++++|+||=+- |+...+-++.-++.+.. ..++.-++.+|||....+..+.+.
T Consensus 265 --~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~ 337 (407)
T PRK12726 265 --IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP 337 (407)
T ss_pred --EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHH
Confidence 1123566655444322223578999999998 55433334444444433 345566778899886666655543
No 174
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.89 E-value=0.0011 Score=69.20 Aligned_cols=246 Identities=14% Similarity=0.100 Sum_probs=146.6
Q ss_pred CCceEEEechHHHHHHHcc------CC-CCCCCcEEEEeCCCcCc-cchhHHHHHHHHHHHhc-----------------
Q 007931 140 DLTAIKFLTDGVLLREMMD------DP-LLTKYSVIMVDEAHERS-ISTDILLGLLKKIQRCR----------------- 194 (584)
Q Consensus 140 ~~~~I~~~T~~~ll~~l~~------~~-~l~~~~~iIiDE~Her~-~~~d~l~~~l~~~~~~~----------------- 194 (584)
...+|++++|=-|-..+.. +. .|+.+.++|||.+|--. -+.+.+..+++.+-..+
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 3689999999766655542 22 39999999999999322 34455555555543322
Q ss_pred ----CCceEEEEecccChHHHHHHhhc-CCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcch-------HHHH
Q 007931 195 ----SDLRLIISSATIEAKSMSAFFHA-RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSD-------YVQA 262 (584)
Q Consensus 195 ----~~~~vi~~SAT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~ 262 (584)
.=.|.|++|+..+++ +...|+. +....+.... ...... .-.+..-..++...|..-...+ ..+-
T Consensus 210 g~a~~~RQtii~S~~~~pe-~~slf~~~~~N~~G~v~~--~~~~~~-~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~y 285 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPE-INSLFNRHCQNYAGKVRL--KPPYEA-SGVISQVVVQVRQVFQRFDCSSPADDPDARFKY 285 (442)
T ss_pred CcchheeEeEEecCCCCHH-HHHHHHhhCcCccceEEE--eecccc-ceeeeccccCCceEEEEecCCCcchhhhHHHHH
Confidence 124799999988665 3344433 2211110000 000000 0111111223333333211111 1111
Q ss_pred HHHHHHHHHh-cCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEe
Q 007931 263 AVSTVLLIHD-KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS 341 (584)
Q Consensus 263 ~~~~i~~~~~-~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlva 341 (584)
-...++.... ....+.+|||+|+.-+--.+-..|++. ++..+.+|--.+..+-.++-..|..|+.+|++-
T Consensus 286 F~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~---------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~ 356 (442)
T PF06862_consen 286 FTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE---------NISFVQISEYTSNSDISRARSQFFHGRKPILLY 356 (442)
T ss_pred HHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc---------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEE
Confidence 2233333333 556688999999999999999998865 788888888888888888888899999999999
Q ss_pred CCCC--ccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCC--C--CCcEEEEccChHHHhh
Q 007931 342 TNIA--ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGR--V--RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 342 T~i~--e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR--~--~~G~~~~l~~~~~~~~ 413 (584)
|-=+ =+=..|.+|+.||-+|+...+. -..++..+.+.... . ..+.|..||++-+...
T Consensus 357 TER~HFfrRy~irGi~~viFY~~P~~p~---------------fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 357 TERFHFFRRYRIRGIRHVIFYGPPENPQ---------------FYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred EhHHhhhhhceecCCcEEEEECCCCChh---------------HHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 9733 3455688899999988832222 22333333333322 1 4678999999876544
No 175
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.87 E-value=0.00023 Score=80.09 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=49.9
Q ss_pred CceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccC
Q 007931 141 LTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (584)
Q Consensus 141 ~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~ 207 (584)
.+.|+++||.+|..-++.+.. +.+++.||||||| |...+-...-+++..+..++..-+.+|||.+.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 578999999999888877766 9999999999999 55444333334444445566667899999993
No 176
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.82 E-value=0.00037 Score=61.58 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=30.3
Q ss_pred HHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeC
Q 007931 55 RTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (584)
Q Consensus 55 ~~~il~~l~~--~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~ 102 (584)
..++...+.. ++.++|.||+|+|||+++-.+..... ..+..++++..
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~ 55 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF-RPGAPFLYLNA 55 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh-cCCCCeEEEeh
Confidence 3445555555 78899999999999987765554432 22344454443
No 177
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00031 Score=79.09 Aligned_cols=157 Identities=14% Similarity=0.101 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCc-
Q 007931 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR- 336 (584)
Q Consensus 258 ~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~- 336 (584)
++.......+..+.... +|++|||+|+.+..+.+++.+.... .......+|..+.+ ..++.|.++.-
T Consensus 462 ~~~~~~~~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~--------~~~~v~~q~~~~~~---~~l~~f~~~~~~ 529 (654)
T COG1199 462 ELLAKLAAYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDER--------STLPVLTQGEDERE---ELLEKFKASGEG 529 (654)
T ss_pred HHHHHHHHHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcC--------ccceeeecCCCcHH---HHHHHHHHhcCC
Confidence 56666666666666554 4589999999999999999987652 11345566666555 34444443333
Q ss_pred EEEEeCCCCccccccCCe--EEEEecCCcccee----------ecCCCC--cccceeeeccHHhHHHhccccCCC--CCc
Q 007931 337 KVVISTNIAETSLTLEGI--VYVVDSGFSKQRF----------YNPISD--IENLVVAPISKASARQRAGRAGRV--RPG 400 (584)
Q Consensus 337 ~vlvaT~i~e~Gidip~v--~~VId~g~~k~~~----------~d~~~~--~~~l~~~~~s~~~~~QR~GRaGR~--~~G 400 (584)
-++|+|..+.+|||+|+= ..||-.|+.-..- |....| .......|.......|-+||+=|. ..|
T Consensus 530 ~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G 609 (654)
T COG1199 530 LILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRG 609 (654)
T ss_pred eEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCce
Confidence 899999999999999854 6677667643322 222121 122333466788899999999998 457
Q ss_pred EEEEccC---hHHHhhhCCCCCCCccccc
Q 007931 401 KCYRLYT---EEYFVKEIPAEGIPEMQRS 426 (584)
Q Consensus 401 ~~~~l~~---~~~~~~~~~~~~~pei~r~ 426 (584)
.++.+=. ...|...+++.-.+.+...
T Consensus 610 ~ivllD~R~~~~~y~~~l~~~l~~~~~~~ 638 (654)
T COG1199 610 VIVLLDKRYATKRYGKLLLDSLPPFPKSK 638 (654)
T ss_pred EEEEecccchhhhHHHHHHHhCCCCcccc
Confidence 6665422 2223333444444444433
No 178
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.81 E-value=0.00021 Score=80.49 Aligned_cols=125 Identities=26% Similarity=0.228 Sum_probs=74.8
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCC--CeEEEEeCchHHHHHHHHHHHHHHhCCcce
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG--GRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~--~~~I~v~~~r~la~~~~~~~~~~~~~~~vg 124 (584)
....+...|.+.+..+..+++++|+|+.|+||||++-.++.... ..+ .++++++|+-+.+ . ++.+..|...
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~-~~~~~~~v~l~ApTg~AA-~----~L~e~~g~~a- 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAE-ELGGLLPVGLAAPTGRAA-K----RLGEVTGLTA- 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCceEEEEeCchHHH-H----HHHHhcCCcc-
Confidence 44667788888888888899999999999999988765543221 122 3456666665433 2 3333333211
Q ss_pred eEEeeEeeccCcCCCCCceEEEechHHHHHHHcc------CCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCce
Q 007931 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMD------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (584)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~------~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (584)
.|-..++..... .......++|||||++ .++...+..+++. ...+.|
T Consensus 393 ----------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~---~~~~~r 445 (720)
T TIGR01448 393 ----------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAA---LPDHAR 445 (720)
T ss_pred ----------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHh---CCCCCE
Confidence 122222211100 0012457899999999 5666665555543 456788
Q ss_pred EEEEecc
Q 007931 199 LIISSAT 205 (584)
Q Consensus 199 vi~~SAT 205 (584)
+|++.-+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8887654
No 179
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.81 E-value=7.2e-05 Score=70.07 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=35.3
Q ss_pred CchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCcc-CCCeEEEEeCch
Q 007931 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPR 104 (584)
Q Consensus 50 P~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~-~~~~~I~v~~~r 104 (584)
|....|...++++..++.+++.||.|||||+++-...++.... .-.++|++-|+.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 6778899999999999999999999999997766555443222 234556665553
No 180
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.80 E-value=7.9e-05 Score=83.69 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=88.3
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCC----C
Q 007931 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP----T 331 (584)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~----~ 331 (584)
..++.+.+...+..+.. .+|.+|||+++.+..+.+++.|.... +..+. .++.. .+.++++. |
T Consensus 516 ~~~~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~ll-~Q~~~---~~~~ll~~f~~~~ 581 (697)
T PRK11747 516 EEAHTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL--------RLMLL-VQGDQ---PRQRLLEKHKKRV 581 (697)
T ss_pred cHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc--------CCcEE-EeCCc---hHHHHHHHHHHHh
Confidence 34577777888877776 34558999999999999999987542 23333 34543 34455543 4
Q ss_pred CCCCcEEEEeCCCCccccccCC--eEEEEecCCccceeecCCC----------Ccccc--eeeeccHHhHHHhccccCCC
Q 007931 332 PRGKRKVVISTNIAETSLTLEG--IVYVVDSGFSKQRFYNPIS----------DIENL--VVAPISKASARQRAGRAGRV 397 (584)
Q Consensus 332 ~~g~~~vlvaT~i~e~Gidip~--v~~VId~g~~k~~~~d~~~----------~~~~l--~~~~~s~~~~~QR~GRaGR~ 397 (584)
.+|...||++|....+|||+|+ .+.||-.++.-..--||.. |-+.+ ...|.....+.|-+||.=|.
T Consensus 582 ~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs 661 (697)
T PRK11747 582 DEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRS 661 (697)
T ss_pred ccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcccccc
Confidence 4577889999999999999986 6888877764321111110 11111 11133455688999999998
Q ss_pred --CCcEEEEc
Q 007931 398 --RPGKCYRL 405 (584)
Q Consensus 398 --~~G~~~~l 405 (584)
..|..+.+
T Consensus 662 ~~D~G~i~il 671 (697)
T PRK11747 662 EQDRGRVTIL 671 (697)
T ss_pred CCceEEEEEE
Confidence 45765544
No 181
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.80 E-value=0.009 Score=69.33 Aligned_cols=125 Identities=19% Similarity=0.234 Sum_probs=77.2
Q ss_pred CCCchHHHHHHHHHH-hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeE
Q 007931 48 RLPVYKYRTAILYLV-ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (584)
Q Consensus 48 ~lP~~~~~~~il~~l-~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~ 126 (584)
...+..-|.+.+..+ ..+++++|+|+.|+||||.+-.+.. .....+.+++.++|+-+ ++ +.+.+..|+..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~-~~e~~G~~V~g~ApTgk-AA----~~L~e~~Gi~a--- 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAARE-AWEAAGYRVVGGALAGK-AA----EGLEKEAGIQS--- 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHH-HHHHcCCeEEEEcCcHH-HH----HHHHHhhCCCe---
Confidence 456788888888776 4578999999999999988765432 21223456677776643 33 23333333321
Q ss_pred EeeEeeccCcCCCCCceEEEechHHHHHHHc-cCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMM-DDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~-~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
.|-..++..+. ....+..-++|||||+. .+++..+..+++.+.. .+.|+|++.=+
T Consensus 450 --------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~~--~garvVLVGD~ 505 (1102)
T PRK13826 450 --------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVTR--AGAKLVLVGDP 505 (1102)
T ss_pred --------------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEECCH
Confidence 12233321111 12236677899999999 6777777777766532 46788887654
No 182
>PF13245 AAA_19: Part of AAA domain
Probab=97.72 E-value=0.00013 Score=56.87 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=35.9
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc---cCCCeEEEEeCchHHHHHHHHHHH
Q 007931 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW---ADGGRVIACTQPRRLAVQAVASRV 115 (584)
Q Consensus 58 il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~---~~~~~~I~v~~~r~la~~~~~~~~ 115 (584)
|..++.+++.++|.||.|||||+.+-..+..... ..+.+++++++++ -++..+.+++
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~-~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTR-AAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCH-HHHHHHHHHH
Confidence 3345666788888999999999666555443321 1244556666555 4455676666
No 183
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00041 Score=73.51 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=70.1
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccC-CCeEE-EEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCC
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVI-ACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~-~~~~I-~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~ 140 (584)
..++++.++||||+||||.+..+........ +.++. +-+-+.+..+....+..+..++..+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~---------------- 411 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH---------------- 411 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE----------------
Confidence 4578999999999999988876665432222 22333 33444455544333333333322110
Q ss_pred CceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHH
Q 007931 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (584)
Q Consensus 141 ~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~ 214 (584)
...+++.+...+.. +.++++||||.+- ++.....+...+..+........+++++++.....+.+.
T Consensus 412 ----~a~d~~~L~~aL~~---l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ei 477 (559)
T PRK12727 412 ----EADSAESLLDLLER---LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEV 477 (559)
T ss_pred ----ecCcHHHHHHHHHH---hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHH
Confidence 01133344444332 4578999999998 443333333333444333344568889999865555443
No 184
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=0.0002 Score=81.04 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=107.8
Q ss_pred eEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC--ccccceEEecCCCcchHHHHHHHHHHHHHhcC
Q 007931 198 RLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKE 274 (584)
Q Consensus 198 ~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~ 274 (584)
.+|++|||+ +.+.|.+.++.........+. ..+.....++.+.. ...+....|......++.+.....+..+....
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~ 521 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQDSPTH-ILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII 521 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccceecCc-ccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC
Confidence 478999999 667787777653211100000 00000001111111 11223334444444567777777777776554
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHh--hhccCCCCCeEEEEecCCCCHHHHhcccCCCCC----CCcEEEEeC--CCCc
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEA--RTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR----GKRKVVIST--NIAE 346 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~--~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~----g~~~vlvaT--~i~e 346 (584)
+|.+|||+||....+.+++.+.+.. ..... ...++. -+. ...++.++++.|++ |.-.|++|+ ....
T Consensus 522 -pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~---~k~i~~-E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~s 595 (705)
T TIGR00604 522 -PDGIVVFFPSYSYLENIVSTWKEMGILENIEK---KKLIFV-ETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVS 595 (705)
T ss_pred -CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc---CCCEEE-eCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCccc
Confidence 5789999999999999998876531 00000 111221 111 11456677777743 455699999 8899
Q ss_pred cccccCC--eEEEEecCCccceeecCC--------------CCc-ccceeeeccHHhHHHhccccCCCCC
Q 007931 347 TSLTLEG--IVYVVDSGFSKQRFYNPI--------------SDI-ENLVVAPISKASARQRAGRAGRVRP 399 (584)
Q Consensus 347 ~Gidip~--v~~VId~g~~k~~~~d~~--------------~~~-~~l~~~~~s~~~~~QR~GRaGR~~~ 399 (584)
+|||+++ .+.||-.|+.-....|+. .+. ..+. ........|-+||+=|...
T Consensus 596 EGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 596 EGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYE--FDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred CccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHH--HHHHHHHHHHhCccccCcC
Confidence 9999986 577888888653222211 111 1111 2334567899999999943
No 185
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00089 Score=69.23 Aligned_cols=128 Identities=23% Similarity=0.227 Sum_probs=75.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCce
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~ 143 (584)
+.+++++||||+||||++..+........+.++ ++-.-+.+.++....++.++..+..+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~------------------- 283 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY------------------- 283 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-------------------
Confidence 457889999999999999888764433333333 555666677777666666666554321
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHh----cCCceEEEEecccChH---HHHHHhh
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC----RSDLRLIISSATIEAK---SMSAFFH 216 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~----~~~~~vi~~SAT~~~~---~~~~~~~ 216 (584)
.......+...+. -.++++||||=+- |.......+.-+..+... .+.-.++.+|||...+ .+.++|.
T Consensus 284 -~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 284 -PVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred -ehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 0111233444433 2578999999876 443333333333333332 2334678899999554 4444554
Q ss_pred c
Q 007931 217 A 217 (584)
Q Consensus 217 ~ 217 (584)
.
T Consensus 358 ~ 358 (432)
T PRK12724 358 S 358 (432)
T ss_pred C
Confidence 3
No 186
>PRK06526 transposase; Provisional
Probab=97.65 E-value=0.00021 Score=69.86 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=23.5
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 60 YLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 60 ~~l~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+.+..++++++.||+|+|||+++-.+..+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 456678899999999999997776554443
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.64 E-value=0.00029 Score=72.83 Aligned_cols=90 Identities=27% Similarity=0.374 Sum_probs=54.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc-CccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~-~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
++++|.|..|||||.++-.++.+. ....+...++++....+.. .+.+.+.... .......
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~-~l~~~l~~~~------------------~~~~~~~ 62 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRN-KLREQLAKKY------------------NPKLKKS 62 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHH-HHHHHHhhhc------------------ccchhhh
Confidence 578999999999997766555544 1234455677777776654 2333333222 0002233
Q ss_pred EEechHHHHHHHc-cCCCCCCCcEEEEeCCC
Q 007931 145 KFLTDGVLLREMM-DDPLLTKYSVIMVDEAH 174 (584)
Q Consensus 145 ~~~T~~~ll~~l~-~~~~l~~~~~iIiDE~H 174 (584)
.+..+..+...+. ......++++|||||||
T Consensus 63 ~~~~~~~~i~~~~~~~~~~~~~DviivDEAq 93 (352)
T PF09848_consen 63 DFRKPTSFINNYSESDKEKNKYDVIIVDEAQ 93 (352)
T ss_pred hhhhhHHHHhhcccccccCCcCCEEEEehhH
Confidence 4445555544433 33447889999999999
No 188
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.63 E-value=0.025 Score=70.51 Aligned_cols=248 Identities=15% Similarity=0.125 Sum_probs=128.5
Q ss_pred CCCchHHHHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCccee
Q 007931 48 RLPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~--~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~ 125 (584)
.+++..-|.+.+..+.. +++.+|+|+.|+||||.+-.+..- ....+..+++++|+-+ ++..+. +..|.....
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~-~~~~G~~V~~lAPTgr-AA~~L~----e~~g~~A~T 500 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHL-ASEQGYEIQIITAGSL-SAQELR----QKIPRLAST 500 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHH-HHhcCCeEEEEeCCHH-HHHHHH----HHhcchhhh
Confidence 35566667666666654 489999999999999887654322 2224556777777764 333333 222221110
Q ss_pred EEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
...+. ..... . ....|...++ ..+..+..-++|||||+- .++...+..+++.... .+.|+|++.=+
T Consensus 501 i~~~l----~~l~~--~-~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~--~garvVlvGD~ 566 (1960)
T TIGR02760 501 FITWV----KNLFN--D-DQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ--HNSKLILLNDS 566 (1960)
T ss_pred HHHHH----Hhhcc--c-ccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh--cCCEEEEEcCh
Confidence 00000 00000 0 0111222333 122235678999999998 5677777777765433 46788887755
Q ss_pred c-----Ch-HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC-ccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCC
Q 007931 206 I-----EA-KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (584)
Q Consensus 206 ~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 278 (584)
- .+ ..|..+.. .... ...... ......+........+....+...+..+.. .+..
T Consensus 567 ~QL~sV~aG~~f~~L~~-~gv~---------------t~~l~~i~rq~~~v~i~~~~~~~r~~~ia~~y~~L~~--~r~~ 628 (1960)
T TIGR02760 567 AQRQGMSAGSAIDLLKE-GGVT---------------TYAWVDTKQQKASVEISEAVDKLRVDYIASAWLDLTP--DRQN 628 (1960)
T ss_pred hhcCccccchHHHHHHH-CCCc---------------EEEeecccccCcceeeeccCchHHHHHHHHHHHhccc--ccCc
Confidence 3 11 22332222 1100 111111 000111112222222223344444444433 4456
Q ss_pred EEEEeCcHHHHHHHHHHHHHHhhhccCC-CCCeEEEEecC-CCCHHHHhcccCCCCCC
Q 007931 279 ILVFLTGQDDIDATIQLLTEEARTSKKN-SSGLIILPLYS-GLSRAEQEQVFSPTPRG 334 (584)
Q Consensus 279 iLVF~~~~~~i~~l~~~L~~~~~~~~~~-~~~~~v~~lh~-~l~~~~r~~i~~~~~~g 334 (584)
++|+.++.++...+...++..+...+.- .....+..+.. .|+..++... ..|+.|
T Consensus 629 tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 629 SQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred eEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9999999999999999999988544332 22444444443 5666666633 444444
No 189
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.62 E-value=0.00017 Score=79.61 Aligned_cols=112 Identities=17% Similarity=0.106 Sum_probs=78.8
Q ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCC---CCCcEEEEeCCCCccccc
Q 007931 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP---RGKRKVVISTNIAETSLT 350 (584)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~---~g~~~vlvaT~i~e~Gid 350 (584)
..++.+|.||.-..-..-+..+|.-. ++.-.-+.|....++|-..++.|. ......+++|-....|+|
T Consensus 724 atgHRVLlF~qMTrlmdimEdyL~~~---------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglN 794 (1157)
T KOG0386|consen 724 ATGHRVLLFSQMTRLMDILEDYLQIR---------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLN 794 (1157)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhhh---------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccc
Confidence 45678999998766666666666543 677888999999988887666664 346789999999999999
Q ss_pred cCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEccChHHHh
Q 007931 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFV 412 (584)
Q Consensus 351 ip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~ 412 (584)
+...+.||- ||+..+ +....|+.-||-|. ++-.++++.+-..++
T Consensus 795 lQtadtvii--------fdsdwn----------p~~d~qaqdrahrigq~~evRv~rl~tv~sve 841 (1157)
T KOG0386|consen 795 LQTADTVII--------FDSDWN----------PHQDLQAQDRAHRIGQKKEVRVLRLITVNSVE 841 (1157)
T ss_pred hhhcceEEE--------ecCCCC----------chhHHHHHHHHHHhhchhheeeeeeehhhHHH
Confidence 998888875 443332 22334555555444 666788888855443
No 190
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.62 E-value=7.4e-05 Score=72.93 Aligned_cols=125 Identities=20% Similarity=0.150 Sum_probs=71.9
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCccee
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGE 125 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~ 125 (584)
.+-...+--+++.++.=++.-|+...||=|||..+.....-.++ .+.++-++|...-||.. .....+.+.+|..+|.
T Consensus 73 ~~g~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL-~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~ 151 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNAL-QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGI 151 (266)
T ss_dssp HTS----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHT-TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred HcCCcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHH-hcCCcEEEeccHHHhhccHHHHHHHHHHhhhcccc
Confidence 44444444445554433333489999999999655544433333 34556667777777766 3344567788888776
Q ss_pred EEeeEeeccCcCCCCCceEEEechHHHHH-HHccC----C---CCCCCcEEEEeCCC
Q 007931 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLR-EMMDD----P---LLTKYSVIMVDEAH 174 (584)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~~~T~~~ll~-~l~~~----~---~l~~~~~iIiDE~H 174 (584)
..+.....+....- ..+|+|+|...+.. .++.. . ..+.+.++|||||+
T Consensus 152 ~~~~~~~~~r~~~Y-~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 152 ITSDMSSEERREAY-AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp EETTTEHHHHHHHH-HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred CccccCHHHHHHHH-hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 55532221111122 57899999987654 23221 1 25789999999998
No 191
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.59 E-value=0.0014 Score=70.05 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=72.4
Q ss_pred CeEEEEecCCCCHHHHhcccCCCC---CCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHH
Q 007931 309 GLIILPLYSGLSRAEQEQVFSPTP---RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKA 385 (584)
Q Consensus 309 ~~~v~~lh~~l~~~~r~~i~~~~~---~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~ 385 (584)
+.....+||.....+|+.+++.|. .|.+-.|++-...+.|+|+-+-+|+|-.|+ .|| |.-..
T Consensus 770 g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl----HWN-----------PaLEq 834 (901)
T KOG4439|consen 770 GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL----HWN-----------PALEQ 834 (901)
T ss_pred CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec----ccC-----------HHHHH
Confidence 778888999999999999998884 345666777788999999999999997776 233 44567
Q ss_pred hHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 386 SARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 386 ~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
++--|+-|.|...+=..||+......+.
T Consensus 835 QAcDRIYR~GQkK~V~IhR~~~~gTvEq 862 (901)
T KOG4439|consen 835 QACDRIYRMGQKKDVFIHRLMCKGTVEQ 862 (901)
T ss_pred HHHHHHHHhcccCceEEEEEEecCcHHH
Confidence 7778899999888888898887766554
No 192
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.58 E-value=0.00065 Score=74.38 Aligned_cols=137 Identities=19% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc---CccC-CCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEe
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA---GWAD-GGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~---~~~~-~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg 128 (584)
..|+..+.....+++++|+|+.|+||||.+-.++... .... ..++++++|+- -|+..+.+.+..... ....
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTG-kAA~rL~e~~~~~~~-~l~~--- 222 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTG-KAAARLAESLRKAVK-NLAA--- 222 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcH-HHHHHHHHHHHhhhc-cccc---
Confidence 4566566666778999999999999998876554321 1111 13455555554 444445544433221 0000
Q ss_pred eEeeccCcCCCCCceEEEechHHHHHHHcc-------CCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEE
Q 007931 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMD-------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (584)
Q Consensus 129 ~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~-------~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~ 201 (584)
. ..... ...+...|-.+++..... ......+++|||||+= .++...+..+++. .+++.|+|+
T Consensus 223 -~----~~~~~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIl 291 (586)
T TIGR01447 223 -A----EALIA-ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLIL 291 (586)
T ss_pred -c----hhhhh-ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEE
Confidence 0 00000 011223344444332111 1113367999999998 5666555555543 456788887
Q ss_pred Eecc
Q 007931 202 SSAT 205 (584)
Q Consensus 202 ~SAT 205 (584)
+.-.
T Consensus 292 vGD~ 295 (586)
T TIGR01447 292 LGDK 295 (586)
T ss_pred ECCh
Confidence 7643
No 193
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.57 E-value=0.00054 Score=67.24 Aligned_cols=139 Identities=21% Similarity=0.187 Sum_probs=81.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEe-eEeeccCcCCCCCce
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG-YTIRFEDFTNKDLTA 143 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg-~~~~~~~~~~~~~~~ 143 (584)
..-.++--.||.||--++..++++.......+.|+++..-.|-.. ++|=.+..|..--.... ........... ...
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D--a~RDl~DIG~~~i~v~~l~~~~~~~~~~~-~~G 138 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD--AERDLRDIGADNIPVHPLNKFKYGDIIRL-KEG 138 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH--HHHHHHHhCCCcccceechhhccCcCCCC-CCC
Confidence 345777778999999999888888766555668999998877765 22222233322111111 11111111122 456
Q ss_pred EEEechHHHHHHHccCC-----------CC--CCCcEEEEeCCCcCc-cch-----hHHHHHHHHHHHhcCCceEEEEec
Q 007931 144 IKFLTDGVLLREMMDDP-----------LL--TKYSVIMVDEAHERS-IST-----DILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~-----------~l--~~~~~iIiDE~Her~-~~~-----d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
|+|+|+..|...-.... ++ ..-.+||+||+|.-. ... .-.-.....+...-++.|+|.+||
T Consensus 139 vlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SA 218 (303)
T PF13872_consen 139 VLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASA 218 (303)
T ss_pred ccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecc
Confidence 99999998877643211 11 223699999999322 111 011122333444557889999999
Q ss_pred cc
Q 007931 205 TI 206 (584)
Q Consensus 205 T~ 206 (584)
|.
T Consensus 219 Tg 220 (303)
T PF13872_consen 219 TG 220 (303)
T ss_pred cc
Confidence 97
No 194
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.56 E-value=0.0017 Score=63.94 Aligned_cols=129 Identities=18% Similarity=0.273 Sum_probs=70.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~ 142 (584)
.++.+.+.|++|+|||+.+-.+..... ..+.++ ++.+-+.++++....+..++..+..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~-~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~------------------- 133 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV------------------- 133 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceE-------------------
Confidence 347899999999999987765544332 122333 34444555554433332333332211
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCcc-chhHHHHHHHHHHHhcCCceEEEEecccChHHHHHH
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI-STDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~-~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~ 214 (584)
+...++..+.+.+..-....++++||||.+- |.. +.+.+..+.+.+....++..++.+|||...++..+.
T Consensus 134 -~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 134 -IAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred -EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 1112444444333211113468999999998 453 444455554444444556667789999855444333
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.55 E-value=0.00057 Score=59.80 Aligned_cols=39 Identities=38% Similarity=0.469 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
++.+++.||+|||||+++-.++...... ...++++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEE
Confidence 5689999999999998888776654322 12455555544
No 196
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0013 Score=68.69 Aligned_cols=127 Identities=17% Similarity=0.219 Sum_probs=78.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCcc--CCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCC
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~--~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~ 141 (584)
.++++.++||||+||||.+..+....... .....++...+.++...+....+++.+|..+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~----------------- 252 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR----------------- 252 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-----------------
Confidence 46789999999999999988665432111 12234667777788877777677776665431
Q ss_pred ceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhc-CCceEEEEecccChHHHHHH
Q 007931 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAF 214 (584)
Q Consensus 142 ~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~vi~~SAT~~~~~~~~~ 214 (584)
.+-++..+...+.. +.+.++++||.+- |......+...++.+.... +.-.++++|||...+.+.+.
T Consensus 253 ---~v~~~~dl~~al~~---l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 253 ---SIKDIADLQLMLHE---LRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ---cCCCHHHHHHHHHH---hcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 11123233222221 5678999999985 5544444555566554433 33456789999866555543
No 197
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00089 Score=74.35 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=79.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCC-eE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGG-RV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~-~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~ 142 (584)
++++.++||||+||||.+..+........++ ++ ++-+-+.++++....+.+++.++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-------------------
Confidence 5689999999999998888776543222332 33 33444567766666666666665432
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEecccChHHHHH
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSA 213 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~~~~~~~~ 213 (584)
.++.++..+.+.+.. +.++++|+||=+- |+....-+...++.+.. ..+.-.++++|||...+.+.+
T Consensus 246 -~~~~~~~~l~~al~~---~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 246 -HAVKDAADLRFALAA---LGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred -cccCCHHHHHHHHHH---hcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 112256666555542 5577999999998 66544445555655543 445567888999986655543
No 198
>PRK08181 transposase; Validated
Probab=97.53 E-value=0.0011 Score=65.22 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=62.8
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCC
Q 007931 60 YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNK 139 (584)
Q Consensus 60 ~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~ 139 (584)
..+.+++++++.||+|+|||.++-.+..+.. ..+..++++.- ..+.. .+.....
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~~g~~v~f~~~-~~L~~-----~l~~a~~------------------- 154 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTRT-TDLVQ-----KLQVARR------------------- 154 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHHH-HcCCceeeeeH-HHHHH-----HHHHHHh-------------------
Confidence 3567888999999999999977665544332 23444555542 22222 1111000
Q ss_pred CCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhc
Q 007931 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (584)
Q Consensus 140 ~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~ 217 (584)
. .+...+++. +.+++++||||++...........++..+.....+.. +++|.-.+...+...|++
T Consensus 155 -~-----~~~~~~l~~------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s-~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 155 -E-----LQLESAIAK------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRS-ILITANQPFGEWNRVFPD 219 (269)
T ss_pred -C-----CcHHHHHHH------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCC-EEEEcCCCHHHHHHhcCC
Confidence 0 122233333 4568999999999433332222222332222222333 455555566777776654
No 199
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.46 E-value=0.00094 Score=73.35 Aligned_cols=138 Identities=19% Similarity=0.194 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcC--ccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeE
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYT 130 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~--~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~ 130 (584)
..|+........++.++|+|++|+||||.+-.++.... .......|+++-|..-|+..+.+.+..... .. +..
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~----~~~ 229 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QL----PLT 229 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cc----ccc
Confidence 34555555556788999999999999988765553321 111122344444444555555554433221 00 000
Q ss_pred eeccCcCCCCCceEEEechHHHHHHHccC-------CCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 131 IRFEDFTNKDLTAIKFLTDGVLLREMMDD-------PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 131 ~~~~~~~~~~~~~I~~~T~~~ll~~l~~~-------~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
..... ....-..|-.+|+...... .....+++|||||+- .++...+..+++. ..++.|+|++.
T Consensus 230 ----~~~~~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlvG 299 (615)
T PRK10875 230 ----DEQKK-RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFLG 299 (615)
T ss_pred ----hhhhh-cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEec
Confidence 00000 0011122333333221111 113356899999998 5665555555553 45778888876
Q ss_pred cc
Q 007931 204 AT 205 (584)
Q Consensus 204 AT 205 (584)
-.
T Consensus 300 D~ 301 (615)
T PRK10875 300 DR 301 (615)
T ss_pred ch
Confidence 44
No 200
>PF13173 AAA_14: AAA domain
Probab=97.43 E-value=0.0015 Score=56.86 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=22.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcC
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAG 90 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~ 90 (584)
++++++|.||.|+||||++-+++.+..
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999988876553
No 201
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.40 E-value=0.0017 Score=65.70 Aligned_cols=128 Identities=24% Similarity=0.287 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCce
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v-~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~ 143 (584)
+.++.++||+|+||||.+..+..... ..++++.++ ..+.+.++.......+...+..+ ... . ...+...
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~------~~~-~--~~~dpa~ 183 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV------IAQ-K--EGADPAS 183 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcCceE------EEe-C--CCCCHHH
Confidence 56889999999999988876655433 233444433 44545544333333344444321 100 0 0010000
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-------hcCCceEEEEecccChHHH
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-------CRSDLRLIISSATIEAKSM 211 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-------~~~~~~vi~~SAT~~~~~~ 211 (584)
++ .+.+... ...++++||||=+- |....+.+..-++.+.+ ..++-.++.++||...+.+
T Consensus 184 ~v---~~~l~~~-----~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~ 249 (318)
T PRK10416 184 VA---FDAIQAA-----KARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNAL 249 (318)
T ss_pred HH---HHHHHHH-----HhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHH
Confidence 00 0111111 13678999999998 66555554444444433 2355578899999844433
No 202
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.37 E-value=0.0014 Score=65.14 Aligned_cols=28 Identities=39% Similarity=0.574 Sum_probs=21.6
Q ss_pred Hhc-CCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 62 VET-HATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 62 l~~-~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+.. ...+++.||+|+||||++-.+....
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 344 4489999999999999888766543
No 203
>PRK04296 thymidine kinase; Provisional
Probab=97.37 E-value=0.002 Score=60.32 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
+...+++||+|+||||.+-.++..... .+.+++++.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k 37 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFK 37 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 457899999999999988887766532 344555553
No 204
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.33 E-value=0.002 Score=65.46 Aligned_cols=37 Identities=32% Similarity=0.346 Sum_probs=24.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
.+.++++.||||+|||+++-.+..+. ...+..+++++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l-~~~g~~V~y~t 218 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL-LDRGKSVIYRT 218 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEE
Confidence 46889999999999997765444333 23344555554
No 205
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.30 E-value=0.0038 Score=66.22 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=71.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCC-eE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCC
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGG-RV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~-~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~ 141 (584)
.++++.++||||+||||.+-.+........+. ++ ++-.-+-++.+.+..+.+++.+|..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~---------------- 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA---------------- 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec----------------
Confidence 45789999999999999888776544322332 33 4444555677766666667766643210
Q ss_pred ceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhc-CCceEEEEecccChHHHHH
Q 007931 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSA 213 (584)
Q Consensus 142 ~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~vi~~SAT~~~~~~~~ 213 (584)
.-++..+...+. .+.+.++++||.+- |+.....+...+..+.... +.-.++.++||.....+.+
T Consensus 319 ----~~~~~Dl~~aL~---~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~ 383 (484)
T PRK06995 319 ----VKDAADLRLALS---ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE 383 (484)
T ss_pred ----cCCchhHHHHHH---hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH
Confidence 001111111221 25677899999976 5543333333333332221 2236788999986655544
No 206
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.29 E-value=0.0014 Score=68.06 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=40.2
Q ss_pred HHHHHHHHHH------hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHH
Q 007931 53 KYRTAILYLV------ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAV 111 (584)
Q Consensus 53 ~~~~~il~~l------~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~ 111 (584)
..|+.+++.+ .++.++.|.|+-|+|||+++-.+..... ..++.++++-|..+||..+
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~--~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR--SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc--cccceEEEecchHHHHHhc
Confidence 4566666666 6788999999999999988876654332 2344566667777877654
No 207
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.29 E-value=0.0026 Score=60.26 Aligned_cols=110 Identities=18% Similarity=0.239 Sum_probs=70.7
Q ss_pred HHHHhcCCCchHHHHHHHHHHhc---CCEEEEEcCCCChHH-HHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHH
Q 007931 42 IEKQRQRLPVYKYRTAILYLVET---HATTIIVGETGSGKT-TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (584)
Q Consensus 42 l~~~~~~lP~~~~~~~il~~l~~---~~~viv~a~TGsGKT-~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~ 117 (584)
+.+...++=+.+.|.++...+.+ +.+.+.+.-.|.||| .++|...+.. +++.+.+.++-|+.+..+.. +.+..
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~L--Adg~~LvrviVpk~Ll~q~~-~~L~~ 91 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALAL--ADGSRLVRVIVPKALLEQMR-QMLRS 91 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHH--cCCCcEEEEEcCHHHHHHHH-HHHHH
Confidence 56777889999999999988865 468999999999999 5567665543 35566777777888877632 22222
Q ss_pred HhCCcceeEEeeEeeccCcCCC----------------CCceEEEechHHHHHH
Q 007931 118 EMGVKVGEEVGYTIRFEDFTNK----------------DLTAIKFLTDGVLLRE 155 (584)
Q Consensus 118 ~~~~~vg~~vg~~~~~~~~~~~----------------~~~~I~~~T~~~ll~~ 155 (584)
.++.-++..+ |...|+..... ....|+++||+.++..
T Consensus 92 ~lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 92 RLGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 2222222211 34444332221 1466999999987653
No 208
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.27 E-value=0.001 Score=64.75 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=34.1
Q ss_pred CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
...+.+||+|||| ++..|.+.++.+.+.......++|+..--+
T Consensus 127 ~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 127 CPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 5678999999999 677788888888777767778888866443
No 209
>PF05729 NACHT: NACHT domain
Probab=97.27 E-value=0.0012 Score=59.97 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=65.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccC--C--CeEEEEeCchHHHHHH----HHHHHHHHhCCcceeEEeeEeeccCcC
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWAD--G--GRVIACTQPRRLAVQA----VASRVAEEMGVKVGEEVGYTIRFEDFT 137 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~--~--~~~I~v~~~r~la~~~----~~~~~~~~~~~~vg~~vg~~~~~~~~~ 137 (584)
+.++|.|+.|+|||+++-.++....... . ...++....+...... +.+.+........ +
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~--------- 67 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----A--------- 67 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----h---------
Confidence 4689999999999988876654332221 1 1344455555444432 2222222111100 0
Q ss_pred CCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchh-----HHHHHHHHHHHh--cCCceEEEEecccChHH
Q 007931 138 NKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTD-----ILLGLLKKIQRC--RSDLRLIISSATIEAKS 210 (584)
Q Consensus 138 ~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d-----~l~~~l~~~~~~--~~~~~vi~~SAT~~~~~ 210 (584)
. .+..+...+... .--+||||=++|-..... .....+..+... .++.++++.|.+-....
T Consensus 68 -~--------~~~~~~~~~~~~----~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~ 134 (166)
T PF05729_consen 68 -P--------IEELLQELLEKN----KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD 134 (166)
T ss_pred -h--------hHHHHHHHHHcC----CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH
Confidence 0 000111122111 223589998886554332 244555555544 67888888877666656
Q ss_pred HHHHhhcC
Q 007931 211 MSAFFHAR 218 (584)
Q Consensus 211 ~~~~~~~~ 218 (584)
+.+++...
T Consensus 135 ~~~~~~~~ 142 (166)
T PF05729_consen 135 LRRRLKQA 142 (166)
T ss_pred HHHhcCCC
Confidence 66666543
No 210
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0016 Score=68.73 Aligned_cols=44 Identities=30% Similarity=0.492 Sum_probs=28.2
Q ss_pred CCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccC
Q 007931 160 PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (584)
Q Consensus 160 ~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~ 207 (584)
+.-.++.++|||||| .+..+....+++.+..-..+ +++.-||-+
T Consensus 117 p~~g~~KV~IIDEah--~Ls~~A~NALLKtLEEPp~~--viFILaTte 160 (484)
T PRK14956 117 PMGGKYKVYIIDEVH--MLTDQSFNALLKTLEEPPAH--IVFILATTE 160 (484)
T ss_pred hhcCCCEEEEEechh--hcCHHHHHHHHHHhhcCCCc--eEEEeecCC
Confidence 334578999999999 45566777777777554334 443334433
No 211
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.22 E-value=0.00079 Score=71.04 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHhcC-CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHH
Q 007931 51 VYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR 114 (584)
Q Consensus 51 ~~~~~~~il~~l~~~-~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~ 114 (584)
+...|+++......+ ...+|.||+|+|||+.+..++... ...+.++++|.|+ .++...+.+|
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~ql-vk~~k~VLVcaPS-n~AVdNiver 248 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQL-VKQKKRVLVCAPS-NVAVDNIVER 248 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHH-HHcCCeEEEEcCc-hHHHHHHHHH
Confidence 345566666655554 789999999999995544444433 2344566666655 4555555554
No 212
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.21 E-value=0.0039 Score=61.76 Aligned_cols=127 Identities=24% Similarity=0.312 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEE-EEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCce
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVI-ACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I-~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~ 143 (584)
.++++++||+|+||||.+..+..... ..+.++. +-+-+.+.+++...+..++..+..+- . .. . ..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~-~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~---~--~~--~--~~---- 137 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK-KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI---K--QK--E--GA---- 137 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE---e--CC--C--CC----
Confidence 35788899999999988776654432 2334443 33445566655444445555553210 0 00 0 01
Q ss_pred EEEechHH-HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-h------cCCceEEEEecccChHHH
Q 007931 144 IKFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-C------RSDLRLIISSATIEAKSM 211 (584)
Q Consensus 144 I~~~T~~~-ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~------~~~~~vi~~SAT~~~~~~ 211 (584)
-|.. ..+.+. .....++++||||=+- |......+..-++.+.. . .++-.++.++||...+.+
T Consensus 138 ----dp~~~~~~~l~-~~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~ 207 (272)
T TIGR00064 138 ----DPAAVAFDAIQ-KAKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL 207 (272)
T ss_pred ----CHHHHHHHHHH-HHHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH
Confidence 0111 111111 1113578999999998 55433343433444332 2 266778999999854443
No 213
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.18 E-value=0.015 Score=56.48 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=63.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~ 145 (584)
..+++.|++|+|||+++-.+..... ..+..+++++ ... +...+...+.. . .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~-~~g~~v~~it-~~~-----l~~~l~~~~~~-----------------~-~---- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL-LRGKSVLIIT-VAD-----IMSAMKDTFSN-----------------S-E---- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEE-HHH-----HHHHHHHHHhh-----------------c-c----
Confidence 5799999999999977765554432 2344455553 222 22222221100 0 0
Q ss_pred EechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHh-cCCceEEEEecccChHHHHHHhhc
Q 007931 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC-RSDLRLIISSATIEAKSMSAFFHA 217 (584)
Q Consensus 146 ~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~-~~~~~vi~~SAT~~~~~~~~~~~~ 217 (584)
.+...+++. +.+++++||||++... .++.-..++-.+... ..+.+-+++|.-++.+++.+.++.
T Consensus 151 -~~~~~~l~~------l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 151 -TSEEQLLND------LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred -ccHHHHHHH------hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 133344444 4578999999999433 455555455544442 222344455556677777777754
No 214
>PRK08116 hypothetical protein; Validated
Probab=97.18 E-value=0.01 Score=58.76 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
+..+++.|++|+|||+++-.+..+. ...+.+++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l-~~~~~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANEL-IEKGVPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEE
Confidence 3459999999999997776544433 22344455544
No 215
>PRK12377 putative replication protein; Provisional
Probab=97.17 E-value=0.02 Score=55.69 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=24.4
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
....+++.||+|+|||+++-.+..... ..+..+++++
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~-~~g~~v~~i~ 136 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL-AKGRSVIVVT 136 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEE
Confidence 346899999999999977765544332 2334455544
No 216
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.15 E-value=0.0039 Score=65.17 Aligned_cols=128 Identities=19% Similarity=0.271 Sum_probs=70.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCe-EEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGR-VIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~-~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
.++.++|++|+||||.+..+..... ..+.+ .++.+-+.+.++....+..++..+.++. + .. ...
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~---~--~~----~~~----- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPFY---G--SY----TES----- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeEE---e--ec----CCC-----
Confidence 4788999999999988876654332 22333 3455556566666554544554443321 0 00 000
Q ss_pred EEechHHH----HHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEeccc--ChHHHHHHhh
Q 007931 145 KFLTDGVL----LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI--EAKSMSAFFH 216 (584)
Q Consensus 145 ~~~T~~~l----l~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~--~~~~~~~~~~ 216 (584)
.|..+ +..+. -.++++||||=+- |...-+.+..-++.+.. ..++-.+++++||. +....++-|.
T Consensus 166 ---dp~~i~~~~l~~~~----~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 166 ---DPVKIASEGVEKFK----KENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred ---CHHHHHHHHHHHHH----hCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 11111 11211 1468999999998 55444444444444433 45666788899998 3333445554
No 217
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0073 Score=59.17 Aligned_cols=121 Identities=23% Similarity=0.332 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccC
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED 135 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~ 135 (584)
..+.+.+.++.++++.||+|+|||+++..+..+.. ..+..+++++-+ ++. ..+...++.
T Consensus 96 ~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~-el~-----~~Lk~~~~~-------------- 154 (254)
T COG1484 96 ASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAP-DLL-----SKLKAAFDE-------------- 154 (254)
T ss_pred HHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHH-HHH-----HHHHHHHhc--------------
Confidence 34445566888999999999999988776655554 344455555433 332 222222211
Q ss_pred cCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccc---hhHHHHHHHHHHHhcCCceEEEEecccChHHHH
Q 007931 136 FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS---TDILLGLLKKIQRCRSDLRLIISSATIEAKSMS 212 (584)
Q Consensus 136 ~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~---~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~ 212 (584)
-...+.|.+. +.+++++||||+--.... .+.+..++......+ .. ++|.-.+.+.+.
T Consensus 155 ----------~~~~~~l~~~------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~ 214 (254)
T COG1484 155 ----------GRLEEKLLRE------LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWD 214 (254)
T ss_pred ----------CchHHHHHHH------hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHH
Confidence 0123455554 457899999998832222 233333333322222 23 555555666666
Q ss_pred HHhhc
Q 007931 213 AFFHA 217 (584)
Q Consensus 213 ~~~~~ 217 (584)
+.|+.
T Consensus 215 ~~~~~ 219 (254)
T COG1484 215 ELFGD 219 (254)
T ss_pred hhccC
Confidence 66653
No 218
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.0043 Score=68.44 Aligned_cols=51 Identities=22% Similarity=0.496 Sum_probs=33.7
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
+++.....+.-.+++++||||+| .+..+....++|.+..-..+.++|+.+-
T Consensus 107 LIe~a~~~P~~gr~KVIIIDEah--~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 107 LLERAVYAPVDARFKVYMIDEVH--MLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred HHHHHHhccccCCceEEEEeChh--hCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 34443334445678999999999 3455566777887666666677666553
No 219
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.10 E-value=0.00024 Score=65.04 Aligned_cols=116 Identities=16% Similarity=0.298 Sum_probs=70.8
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCC--CCccccccC
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN--IAETSLTLE 352 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~--i~e~Gidip 352 (584)
.+|.+|||+|+.+..+.+.+.+.+.... .++.+..- ...+...+++.|+++.-.|++++. ....|||+|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 4588999999999999998887553210 02222222 244677778888889999999998 999999999
Q ss_pred C--eEEEEecCCccceeecCC-------------CCcccceeeeccHHhHHHhccccCCCCCc
Q 007931 353 G--IVYVVDSGFSKQRFYNPI-------------SDIENLVVAPISKASARQRAGRAGRVRPG 400 (584)
Q Consensus 353 ~--v~~VId~g~~k~~~~d~~-------------~~~~~l~~~~~s~~~~~QR~GRaGR~~~G 400 (584)
+ .+.||-.|+.-....|+. .... ....+.......|-+||+=|...-
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~Qa~GR~iR~~~D 140 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFR-DWYLPPAIRKLKQAIGRLIRSEDD 140 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHH-HHTHHHHHHHHHHHHHCC--STT-
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchh-hHhhHHHHHHHhhhcCcceeccCC
Confidence 6 778888888543322221 0111 111244556778999999998443
No 220
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.09 E-value=0.0081 Score=63.32 Aligned_cols=121 Identities=26% Similarity=0.294 Sum_probs=66.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCe-EEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGR-VIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~-~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
.+++++|++|+||||.+..+..... ..+.+ .++.+-+.+.++....+.++...+..+. +. . . ..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~-~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~---~~------~--~-~~-- 160 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY---GD------P--D-NK-- 160 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEE---ec------C--C-cc--
Confidence 4788999999999988776654332 22333 3455555556655555555565554321 10 0 0 00
Q ss_pred EEechHH-HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEecccCh
Q 007931 145 KFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEA 208 (584)
Q Consensus 145 ~~~T~~~-ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~~~ 208 (584)
.+.. +.+.+.. +...++||||.+- |....+.++.-++.+.. ..++..++.++||...
T Consensus 161 ---d~~~i~~~al~~---~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 161 ---DAVEIAKEGLEK---FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred ---CHHHHHHHHHHH---hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 1222 2222221 2235899999997 44333344444444433 4567778889998843
No 221
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.08 E-value=0.0025 Score=63.56 Aligned_cols=86 Identities=24% Similarity=0.307 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCC-CeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADG-GRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~-~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~ 142 (584)
+++++++||||+||||.+..+........+ .++ ++-+-+.+.++.......++.+++.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~------------------ 255 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK------------------ 255 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee------------------
Confidence 458999999999999888777654433212 333 444445455554444444554443321
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCC
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEA 173 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~ 173 (584)
...++..+...+.. +.++++|+||.+
T Consensus 256 --~~~~~~~l~~~l~~---~~~~d~vliDt~ 281 (282)
T TIGR03499 256 --VARDPKELRKALDR---LRDKDLILIDTA 281 (282)
T ss_pred --ccCCHHHHHHHHHH---ccCCCEEEEeCC
Confidence 11234445444332 356899999975
No 222
>PRK10867 signal recognition particle protein; Provisional
Probab=97.07 E-value=0.0055 Score=64.43 Aligned_cols=123 Identities=22% Similarity=0.248 Sum_probs=68.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCC-eEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGG-RVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~-~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
.+++++|++|+||||.+..+........+. ..++-+-+.+.++....+..++..+..+.. .. ..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~-----~~----~~------ 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP-----SG----DG------ 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe-----cC----CC------
Confidence 478899999999998877665543222133 345666677776654444455555543211 00 00
Q ss_pred EEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEeccc
Q 007931 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (584)
Q Consensus 145 ~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~ 206 (584)
..|..+...........++++||||=+- |....+.+...+..+.. ..++--++.++|+.
T Consensus 166 --~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 166 --QDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 1233333322211123578999999998 54433344444444433 34555577888887
No 223
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.05 E-value=0.0012 Score=61.00 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=55.9
Q ss_pred HHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCC
Q 007931 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (584)
Q Consensus 59 l~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~ 138 (584)
.+.+.+++++++.||+|+|||+++-.+..+.. ..+..++++. ...+.. .+.... ..
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~~v~f~~-~~~L~~-----~l~~~~-----------------~~ 96 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAI-RKGYSVLFIT-ASDLLD-----ELKQSR-----------------SD 96 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEE-HHHHHH-----HHHCCH-----------------CC
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhc-cCCcceeEee-cCceec-----cccccc-----------------cc
Confidence 45567788999999999999977765554432 2444455554 333322 221100 00
Q ss_pred CCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcC
Q 007931 139 KDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHAR 218 (584)
Q Consensus 139 ~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~ 218 (584)
. +.+.+++. +.+++++||||+--..........+...+..+..+..+|+ |.-.+.+.+.+.+++.
T Consensus 97 ~--------~~~~~~~~------l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIi-TSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 97 G--------SYEELLKR------LKRVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTII-TSNLSPSELEEVLGDR 161 (178)
T ss_dssp T--------THCHHHHH------HHTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEE-EESS-HHHHHT-----
T ss_pred c--------chhhhcCc------cccccEecccccceeeecccccccchhhhhHhhcccCeEe-eCCCchhhHhhccccc
Confidence 1 12233444 3468999999997322222222222222222222334555 4456788888888754
No 224
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.003 Score=69.41 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=33.5
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
++..+...+.-.++.++||||+| .+..+....+||.+..-..+.++|+.
T Consensus 107 li~~~~~~p~~g~~KV~IIDEah--~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 107 LLDNVQYAPARGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHHHhhhhcCCCEEEEEechH--hCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 33444444445688999999999 34556777888877665566666665
No 225
>PRK09183 transposase/IS protein; Provisional
Probab=97.03 E-value=0.0056 Score=60.23 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=27.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
+..+.++++.||+|+|||+++-.+..... ..+..+.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEe
Confidence 56788999999999999988876644332 2333444443
No 226
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0046 Score=67.23 Aligned_cols=51 Identities=22% Similarity=0.483 Sum_probs=35.0
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
+++.+...+...+++++||||+| .++......+||.+..-..+.++|+.|-
T Consensus 112 Lie~~~~~P~~gr~KViIIDEah--~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 112 LLDKAVYAPTAGRFKVYMIDEVH--MLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHHHhchhcCCceEEEEEChH--hcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 33333334456688999999999 3455667778887766666777777664
No 227
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.01 E-value=0.0023 Score=61.77 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhcCCE-EEEEcCCCChHHHHHHHHHHhc-------CccCCCeEEEEeCchHHHHHHHHHHHHH
Q 007931 52 YKYRTAILYLVETHAT-TIIVGETGSGKTTQIPQYLKEA-------GWADGGRVIACTQPRRLAVQAVASRVAE 117 (584)
Q Consensus 52 ~~~~~~il~~l~~~~~-viv~a~TGsGKT~~ip~~l~~~-------~~~~~~~~I~v~~~r~la~~~~~~~~~~ 117 (584)
...|.+.+..+..... .+|.||.|||||+.+..++... ....+.+++++++. .-+...+.+++.+
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~s-N~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPS-NAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESS-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCC-chhHHHHHHHHHh
Confidence 3556666676666665 9999999999997777665544 12344555666655 4555566666555
No 228
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.01 E-value=0.006 Score=67.03 Aligned_cols=44 Identities=25% Similarity=0.489 Sum_probs=31.2
Q ss_pred cCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 158 DDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 158 ~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
..+...++++|||||+|. +..+....+++.+.......++|+.+
T Consensus 113 ~~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 113 YAPTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 344567889999999993 44455667777776666677777765
No 229
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.00 E-value=0.0035 Score=70.43 Aligned_cols=117 Identities=23% Similarity=0.302 Sum_probs=95.0
Q ss_pred cCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCC--cEEEEeCCCCccccc
Q 007931 273 KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK--RKVVISTNIAETSLT 350 (584)
Q Consensus 273 ~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~--~~vlvaT~i~e~Gid 350 (584)
+..+..+|||..=.....-+...|..+ ++.-+-+.|...-++|+..++.|.... ...|++|-..+.|||
T Consensus 1273 k~eghRvLIfTQMtkmLDVLeqFLnyH---------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiN 1343 (1958)
T KOG0391|consen 1273 KSEGHRVLIFTQMTKMLDVLEQFLNYH---------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGIN 1343 (1958)
T ss_pred HhcCceEEehhHHHHHHHHHHHHHhhc---------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccc
Confidence 345678999987666666666666554 888899999999999999999997654 357899999999999
Q ss_pred cCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 351 ip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
+-+.+.||. ||...+ |.=-+++.-|.-|.|++++=+.|||+++...+.
T Consensus 1344 LtgADTVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1344 LTGADTVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred cccCceEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 999999996 555544 555678888999999999999999999877665
No 230
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0062 Score=66.42 Aligned_cols=43 Identities=23% Similarity=0.498 Sum_probs=29.2
Q ss_pred CCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 159 DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 159 ~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
.+...++.++||||+| .+.......+++.+........+|+.+
T Consensus 113 ~P~~gk~KV~IIDEVh--~LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 113 APTQGRFKVYLIDEVH--MLSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred hhhcCCcEEEEEechH--hcCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 3445678999999999 344456666777666555566666654
No 231
>PRK08727 hypothetical protein; Validated
Probab=96.92 E-value=0.006 Score=59.09 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
.+.+++.||+|+|||+++-.+.... ...+.+++|+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~-~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAA-EQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEe
Confidence 3569999999999997766544332 22334455554
No 232
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.92 E-value=0.024 Score=57.08 Aligned_cols=114 Identities=13% Similarity=0.187 Sum_probs=63.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCce
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~ 143 (584)
.++.+++.|++|+|||+++-.+..+.. ..+..+.++.-|. + ...+....+ . .
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~~-l-----~~~lk~~~~------------------~-~-- 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFPE-F-----IRELKNSIS------------------D-G-- 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHHH-H-----HHHHHHHHh------------------c-C--
Confidence 346899999999999988776655543 3344455555442 2 222222111 0 0
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhc--CCceEEEEecccChHHHHHHhh
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR--SDLRLIISSATIEAKSMSAFFH 216 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~--~~~~vi~~SAT~~~~~~~~~~~ 216 (584)
+....++. +.+++++||||+.--.........++..+...+ ....+ ++|.-.+.+.+.+.|.
T Consensus 207 ----~~~~~l~~------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~t-i~TSNl~~~el~~~~~ 270 (306)
T PRK08939 207 ----SVKEKIDA------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPT-FFTSNFDFDELEHHLA 270 (306)
T ss_pred ----cHHHHHHH------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeE-EEECCCCHHHHHHHHh
Confidence 22233333 457899999999833332222223444443322 33344 4555667788888774
No 233
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.014 Score=60.03 Aligned_cols=52 Identities=12% Similarity=0.175 Sum_probs=35.6
Q ss_pred HHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
.+.+.+...+....+.+|||||+| .++......+++.+..-..+..+|++|.
T Consensus 128 ~l~~~l~~~~~~g~~rVviIDeAd--~l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 128 RVGHFLSQTSGDGNWRIVIIDPAD--DMNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred HHHHHhhhccccCCceEEEEEchh--hcCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 344444444556788999999999 3556667778887766555666666653
No 234
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.0078 Score=62.49 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=31.5
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
+...+...+...+..++||||+|. +..+....+++.+.......++|+.+
T Consensus 107 i~~~~~~~p~~~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 107 ILDNIYYSPSKSRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHHHhcCcccCCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 444444445566789999999993 33444556666665555566666644
No 235
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.0061 Score=68.54 Aligned_cols=42 Identities=21% Similarity=0.480 Sum_probs=31.0
Q ss_pred CCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 159 DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 159 ~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
.+.-.++.++||||+| .+..+....++|.+..-..++++|+.
T Consensus 114 ~P~~gk~KViIIDEAh--~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 114 RPSRGRFKVYLIDEVH--MLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred hhhcCCcEEEEEechH--hcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 3444678999999999 45667778888877766666777765
No 236
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.87 E-value=0.0062 Score=54.93 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=28.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~l 106 (584)
+++|.|++|+|||+++-.++..... .+++++++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcch
Confidence 3789999999999888877665533 45667777766543
No 237
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.84 E-value=0.011 Score=54.45 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=59.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEE
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~ 145 (584)
++++.|++|+|||+.+-.+...... .+.++ ++-..+++........+.+...+..+. .. .. ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~--------~~--~~--~~--- 65 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVF--------EE--GE--GK--- 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHHHHHHhcccCCeEEE--------ec--CC--CC---
Confidence 5789999999999887655543321 23344 334455544333222222332222110 00 00 00
Q ss_pred EechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEecccCh
Q 007931 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEA 208 (584)
Q Consensus 146 ~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~~~ 208 (584)
.+..++........-.++++||+|..+....+.+. ...+..+.. ..++-.++.++|....
T Consensus 66 --~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~-l~~l~~l~~~~~~~~~~lVv~~~~~~ 126 (173)
T cd03115 66 --DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENL-MEELKKIKRVVKPDEVLLVVDAMTGQ 126 (173)
T ss_pred --CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHH-HHHHHHHHhhcCCCeEEEEEECCCCh
Confidence 12222211111111347889999999833333333 333333333 2356667778886533
No 238
>PRK05642 DNA replication initiation factor; Validated
Probab=96.84 E-value=0.0076 Score=58.43 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=22.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
..+++.||+|+|||.++-.+..+. ...+.+++|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-EQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEee
Confidence 568999999999997765443322 22334555554
No 239
>PRK06893 DNA replication initiation factor; Validated
Probab=96.84 E-value=0.0042 Score=60.03 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=24.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
.++.+++.||+|+|||+++-.+..+.. ..+.+++|+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~y~~ 74 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL-LNQRTAIYIP 74 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEee
Confidence 356789999999999977765554432 2233455544
No 240
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.83 E-value=0.0029 Score=63.37 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=39.3
Q ss_pred chHHHHH----HHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccC---CCeEEEEeCchHHHHH
Q 007931 51 VYKYRTA----ILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWAD---GGRVIACTQPRRLAVQ 109 (584)
Q Consensus 51 ~~~~~~~----il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~---~~~~I~v~~~r~la~~ 109 (584)
.+..|.+ +..++.+++.+++.+|||+||| +++|.+........ ..++++++.+..+..+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q 76 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEK 76 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHH
Confidence 3666666 6677788999999999999999 45554322111111 2378899988776444
No 241
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.83 E-value=0.0029 Score=63.37 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=39.3
Q ss_pred chHHHHH----HHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccC---CCeEEEEeCchHHHHH
Q 007931 51 VYKYRTA----ILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWAD---GGRVIACTQPRRLAVQ 109 (584)
Q Consensus 51 ~~~~~~~----il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~---~~~~I~v~~~r~la~~ 109 (584)
.+..|.+ +..++.+++.+++.+|||+||| +++|.+........ ..++++++.+..+..+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q 76 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEK 76 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHH
Confidence 3666666 6677788999999999999999 45554322111111 2378899988776444
No 242
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.83 E-value=0.0072 Score=58.32 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=25.4
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
..++.+++.||+|+|||+++-.+.... ...+..++++.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~~~~~i~ 77 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA-SYGGRNARYLD 77 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEEe
Confidence 345789999999999998876555433 22334445543
No 243
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.76 E-value=0.014 Score=59.99 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=24.3
Q ss_pred HHHHHHHhcCC--EEEEEcCCCChHHHHHHHHHHhc
Q 007931 56 TAILYLVETHA--TTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 56 ~~il~~l~~~~--~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+.+..++..++ .+++.||+|+|||+++-.+..+.
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 33444555555 79999999999998876665443
No 244
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.75 E-value=0.0088 Score=57.59 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=24.8
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v 100 (584)
..+..+++.||+|+|||+++-.+..... ..+...+++
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~-~~~~~~~~i 72 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAE-ERGKSAIYL 72 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH-hcCCcEEEE
Confidence 3467899999999999988866554432 223344444
No 245
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.75 E-value=0.014 Score=61.41 Aligned_cols=123 Identities=21% Similarity=0.231 Sum_probs=67.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCC-eEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGG-RVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~-~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
.+++++|++|+||||.+..+........+. ..++-+-+++.++....+..+...+..+.. . ....
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~-----~----~~~~----- 165 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA-----L----GKGQ----- 165 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe-----c----CCCC-----
Confidence 378899999999998887666543211233 345666667766655455555555543211 0 0001
Q ss_pred EEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEeccc
Q 007931 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (584)
Q Consensus 145 ~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~ 206 (584)
.|..+...........++++||||=+- |....+.+...+..+.. ..++-.++.++|+.
T Consensus 166 ---~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 166 ---SPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred ---CHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 222222211111113568999999998 55443444444544443 34555577788886
No 246
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.011 Score=63.87 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=30.6
Q ss_pred CCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 159 DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 159 ~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
.+.-.+++++||||+| .+..+....+++.+..-.++.++|+.+
T Consensus 114 ~p~~~~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 114 APTKGRFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred ccccCCcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 4445688999999999 345556677777766666667676654
No 247
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.012 Score=62.68 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=33.6
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
++......|...++.++||||+|. +..+....+++.+..-.+..++|+.+
T Consensus 104 Iie~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 104 ILENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 334444456678899999999993 44556667777766655666666644
No 248
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.71 E-value=0.013 Score=57.76 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=34.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCC-----CeEEEEeCchHHHHHHHHHHHHHHhCCc
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADG-----GRVIACTQPRRLAVQAVASRVAEEMGVK 122 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~-----~~~I~v~~~r~la~~~~~~~~~~~~~~~ 122 (584)
++++|+|+||-|||+++-.|...+..... .+++++--|-.--...+...+...++..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 57999999999999999888865533221 2333332222222224555556666554
No 249
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.015 Score=62.43 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=30.1
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEE
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~ 201 (584)
++......+...++.++||||+|. +....+..+++.+....+...+|+
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~~--Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVHM--LSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChhh--cCHHHHHHHHHHHhhcCCCEEEEE
Confidence 444444556778899999999994 334455566666554444444444
No 250
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.66 E-value=0.01 Score=54.90 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=63.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcC--CC
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFT--NK 139 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~--~~ 139 (584)
+..++.+.|.||+||||||++-.+.-.... ..+. |.+ .-..+... ...+. ..+||........ +.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~-~g~~~~~~--~~~~~--------~~i~~~~q~~~~~~~tv 91 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGE-ITL-DGVPVSDL--EKALS--------SLISVLNQRPYLFDTTL 91 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCE-EEE-CCEEHHHH--HHHHH--------hhEEEEccCCeeecccH
Confidence 357899999999999999988766543222 2343 332 22222211 11111 1123221110000 00
Q ss_pred CCce-EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 140 DLTA-IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 140 ~~~~-I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
.-. +.-.+.|...+......++.+.+++|+||.= .+++......+.+.+.....+..+|+.|
T Consensus 92 -~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~s 154 (178)
T cd03247 92 -RNNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178)
T ss_pred -HHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 000 1223334444443333456778999999987 5677666665555555543344344433
No 251
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.012 Score=63.83 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=34.0
Q ss_pred HHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
.++..+...+...+..++||||+|. +..+....+++.+........+|+.+
T Consensus 106 ~ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 106 EILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3444444455667889999999993 44556667777666555566666655
No 252
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.015 Score=53.41 Aligned_cols=133 Identities=18% Similarity=0.242 Sum_probs=65.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCC-
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD- 140 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~- 140 (584)
+..++.+.|.||+||||||++-.+.-.... ..+. |.+ .-..+.... ..... ..+||...........
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~-i~~-~g~~~~~~~-~~~~~--------~~i~~~~~~~~~~~~t~ 92 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGE-ILI-DGVDLRDLD-LESLR--------KNIAYVPQDPFLFSGTI 92 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCE-EEE-CCEEhhhcC-HHHHH--------hhEEEEcCCchhccchH
Confidence 357899999999999999988766543322 2343 322 111111100 00011 1123221110000000
Q ss_pred CceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHH
Q 007931 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSM 211 (584)
Q Consensus 141 ~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~ 211 (584)
.-++ .+.|.--+......+..+.+++++||-= .+++......+.+.+.....+ +.|+++ |-+.+.+
T Consensus 93 ~e~l--LS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~-~tii~~-sh~~~~~ 158 (171)
T cd03228 93 RENI--LSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALAKG-KTVIVI-AHRLSTI 158 (171)
T ss_pred HHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCC-CEEEEE-ecCHHHH
Confidence 0001 3444433333333346678999999987 577776666666665554444 444444 4444433
No 253
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.65 E-value=0.012 Score=61.96 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=19.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++|.||+|+|||+++-.++.+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999887766543
No 254
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.038 Score=57.65 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=73.5
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCC--ccccccC
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA--ETSLTLE 352 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~--e~Gidip 352 (584)
....+||+.|+.-+--++-..+++. .+....+|-=-+.+.-.+.-+-|-.|..+|++-|.=+ =+--+|.
T Consensus 551 t~s~~LiyIPSYfDFVRvRNy~K~e---------~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ik 621 (698)
T KOG2340|consen 551 TESGILIYIPSYFDFVRVRNYMKKE---------EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIK 621 (698)
T ss_pred ccCceEEEecchhhHHHHHHHhhhh---------hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheec
Confidence 3456999999999999988888776 2222222221122222233344667889999999754 3567889
Q ss_pred CeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-----CCcEEEEccChHHHh
Q 007931 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-----RPGKCYRLYTEEYFV 412 (584)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-----~~G~~~~l~~~~~~~ 412 (584)
+|.-||.++. .+. |-=.++.+.+.+|+.-. ..-.|-.||++-+..
T Consensus 622 GVk~vVfYqp--------P~~-------P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i 671 (698)
T KOG2340|consen 622 GVKNVVFYQP--------PNN-------PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRI 671 (698)
T ss_pred ceeeEEEecC--------CCC-------cHHHHHHHhhhhhhhccCCccccceEEEEEeechhhH
Confidence 9999997555 333 44456777888877432 223788899886543
No 255
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=96.64 E-value=0.00042 Score=68.00 Aligned_cols=110 Identities=20% Similarity=0.240 Sum_probs=58.5
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe---CchHHHHHHHHHHHHHHhCCcceeEEeeEeecc
Q 007931 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT---QPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE 134 (584)
Q Consensus 58 il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~---~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~ 134 (584)
++...+.+...|+.|||||||||.+..+.++... .+-..++++ +..+++..-+.+...-.........--+..+++
T Consensus 266 ~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~-QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y~HWadrFE 344 (514)
T KOG2373|consen 266 YLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFT-QGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSYKHWADRFE 344 (514)
T ss_pred HhccCCCCceEEEecCCCCCceeEehHhhHHHHh-hhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhhhHHHHHHh
Confidence 3444456788999999999999998888877643 333445553 455665543332211111111100001222333
Q ss_pred CcCCCCCceEEEech------HHHHHHHccCCCCCCCcEEEEeCCC
Q 007931 135 DFTNKDLTAIKFLTD------GVLLREMMDDPLLTKYSVIMVDEAH 174 (584)
Q Consensus 135 ~~~~~~~~~I~~~T~------~~ll~~l~~~~~l~~~~~iIiDE~H 174 (584)
. ....++|- +..++.+.......++.|||||..+
T Consensus 345 r------lplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQ 384 (514)
T KOG2373|consen 345 R------LPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQ 384 (514)
T ss_pred c------cchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 2 23344442 2233444333346678899999877
No 256
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.63 E-value=0.021 Score=65.01 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=35.9
Q ss_pred CcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC
Q 007931 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV 397 (584)
Q Consensus 335 ~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 397 (584)
.++.|++-+++..|-|-|++-.+.-.. ..-|.....|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~------------------~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLR------------------SSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEec------------------cCCchHHHHHHhccceec
Confidence 689999999999999999886655321 134666778999999997
No 257
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.60 E-value=0.0074 Score=58.54 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=23.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v 100 (584)
..+.+++.||+|+|||+++-.+..... ..+.+++|+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~ 79 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYV 79 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 346899999999999987765544332 223444554
No 258
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.60 E-value=0.016 Score=62.12 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=17.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+.+++.||+|+|||+++-.+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~ 170 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGN 170 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999977654443
No 259
>PRK06921 hypothetical protein; Provisional
Probab=96.58 E-value=0.062 Score=53.05 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=25.4
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccC-CCeEEEEe
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACT 101 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~-~~~~I~v~ 101 (584)
.+..+++.|++|+|||+++-.+..+. ... +..+++++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-MRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-hhhcCceEEEEE
Confidence 46789999999999998776554433 223 44556655
No 260
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.55 E-value=0.015 Score=51.79 Aligned_cols=94 Identities=20% Similarity=0.338 Sum_probs=55.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCC
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~ 141 (584)
+..++.+.|.||+||||||++-.+.-.... ..+. |.+- .+ ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~~-~~--------------------~~i~~~~~--------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGI-VTWG-ST--------------------VKIGYFEQ--------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceE-EEEC-Ce--------------------EEEEEEcc---------
Confidence 357889999999999999888655432211 2232 3321 10 12333211
Q ss_pred ceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHh
Q 007931 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (584)
Q Consensus 142 ~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~ 193 (584)
.+.|..-+......+..+.+++|+||-- .+++.+....+.+.+...
T Consensus 71 -----lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 71 -----LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEY 116 (144)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHc
Confidence 4455544443333446678999999987 567776666555555444
No 261
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.013 Score=52.95 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=62.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCC
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~ 141 (584)
+..++.+.|.|++|+||||++-.+...... ..+. |.+- ...+.... ..++. ..++|...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~-i~~~-~~~~~~~~-~~~~~--------~~i~~~~q--------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGE-ILID-GKDIAKLP-LEELR--------RRIGYVPQ--------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccE-EEEC-CEEcccCC-HHHHH--------hceEEEee---------
Confidence 356789999999999999888765433221 2222 2221 11111000 00000 11222211
Q ss_pred ceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcC-CceEEEEecccChHHHHHH
Q 007931 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSATIEAKSMSAF 214 (584)
Q Consensus 142 ~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~-~~~vi~~SAT~~~~~~~~~ 214 (584)
.+.|...+......+..+.+++|+||.- .+++......+.+.+..... +..+++. |-+.+.+..+
T Consensus 81 -----lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~~~~~tii~~--sh~~~~~~~~ 146 (157)
T cd00267 81 -----LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELAEEGRTVIIV--THDPELAELA 146 (157)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHh
Confidence 3444433333333334567999999998 67777666665555554332 2333333 4444444444
No 262
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.02 Score=62.34 Aligned_cols=50 Identities=22% Similarity=0.449 Sum_probs=33.9
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
++......+...++.++||||+|. +..+....+++.+........+|+.+
T Consensus 107 l~~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 107 LLDNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 444444456677889999999993 34455666777776666667677655
No 263
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.017 Score=60.79 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=29.3
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
+...+...|...+..+|||||+|.- .......+++.+....+...+|+.
T Consensus 115 l~~~~~~~p~~~~~kvvIIdea~~l--~~~~~~~LLk~LEep~~~t~~Il~ 163 (397)
T PRK14955 115 LRENVRYGPQKGRYRVYIIDEVHML--SIAAFNAFLKTLEEPPPHAIFIFA 163 (397)
T ss_pred HHHHHhhchhcCCeEEEEEeChhhC--CHHHHHHHHHHHhcCCCCeEEEEE
Confidence 4445555677888999999999942 333444555555433344444443
No 264
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.49 E-value=0.025 Score=52.83 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=30.8
Q ss_pred HHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
.+.+...+......+|||||+|. +..+....+++.+....++..+|+.+
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~--l~~~~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAER--MNEAAANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred HHHHccCcccCCeEEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 55556666678889999999993 33344555666555444445455543
No 265
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.022 Score=58.84 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=43.0
Q ss_pred ceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 142 ~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
..|.|-..-.+.+.+...+......+|||||+| ..+......++|.+..-..+..+|++|..+
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead--~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTAD--EMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechH--hcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 446555555566665555567788999999999 456667777888776655566666666554
No 266
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.017 Score=61.84 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=22.1
Q ss_pred HHHHHhcCC---EEEEEcCCCChHHHHHHHHHHh
Q 007931 58 ILYLVETHA---TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 58 il~~l~~~~---~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+...+..++ .++++||+|+||||++-.+...
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344455553 3799999999999887766543
No 267
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.45 E-value=0.017 Score=56.97 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=16.8
Q ss_pred CEEEEEcCCCChHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~ 85 (584)
.++++.||+|+|||+++-.+
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 57899999999999777544
No 268
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.45 E-value=0.038 Score=55.02 Aligned_cols=134 Identities=28% Similarity=0.293 Sum_probs=77.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
.+++++|-+|+||||.+..+..... ..+.++ |.-.-+-|-++....+--++..|..+-. .. ...+..-|
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~-------~~--~G~DpAaV 209 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS-------GK--EGADPAAV 209 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHH-HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc-------cC--CCCCcHHH
Confidence 3688899999999988887665442 233333 4444555666664444445555554321 11 11212334
Q ss_pred EEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCc------eEEEEeccc--ChHHHHHHh
Q 007931 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDL------RLIISSATI--EAKSMSAFF 215 (584)
Q Consensus 145 ~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~------~vi~~SAT~--~~~~~~~~~ 215 (584)
+|-.-+... -+++++|++|=|- |.-+-.-++.-|+++.+ ..+.. .++.+=||. |.-.-++.|
T Consensus 210 afDAi~~Ak--------ar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F 280 (340)
T COG0552 210 AFDAIQAAK--------ARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF 280 (340)
T ss_pred HHHHHHHHH--------HcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH
Confidence 443333222 4689999999999 66666566666666555 22232 455568998 444445566
Q ss_pred hcC
Q 007931 216 HAR 218 (584)
Q Consensus 216 ~~~ 218 (584)
...
T Consensus 281 ~ea 283 (340)
T COG0552 281 NEA 283 (340)
T ss_pred HHh
Confidence 653
No 269
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.44 E-value=0.019 Score=57.42 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=23.0
Q ss_pred CEEEEEcCCCChHHHHHH---HHHHhcCccCCCeEEEEe
Q 007931 66 ATTIIVGETGSGKTTQIP---QYLKEAGWADGGRVIACT 101 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip---~~l~~~~~~~~~~~I~v~ 101 (584)
..+++.||+|||||+++- ..+...+....+..+.+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 369999999999997663 334444333334455544
No 270
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.40 E-value=0.049 Score=59.39 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=22.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCcc-CCCeEEEEe
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~-~~~~~I~v~ 101 (584)
+.++|.|++|+|||.++-.+..+.... .+.+++|++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 348999999999997776554433211 234455554
No 271
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.016 Score=63.30 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=34.4
Q ss_pred HHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
...+...+...++.++||||+| .+..+....+++.+..-..+..+|+.+
T Consensus 107 ~~~~~~~P~~~~~KVvIIDEah--~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 107 RDRAFYAPAQSRYRIFIVDEAH--MVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHHhhhhcCCceEEEEECCC--cCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 3344444557789999999999 345667777777777666666666655
No 272
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.40 E-value=0.02 Score=60.42 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=16.1
Q ss_pred CEEEEEcCCCChHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~ 85 (584)
+.+++.||+|+|||+++-.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai 156 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAI 156 (405)
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 45899999999999777433
No 273
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.39 E-value=0.029 Score=61.74 Aligned_cols=50 Identities=24% Similarity=0.502 Sum_probs=35.1
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
+...+...+...++.+|||||+|. +.......+++.+..-.++..+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 444555556678899999999993 44455667777766666677777755
No 274
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.065 Score=51.80 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=43.8
Q ss_pred echHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhc
Q 007931 147 LTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (584)
Q Consensus 147 ~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~ 217 (584)
.+=|..-|.+....+.++-+++++||-= -+++......++..+...+..=+.|+|. |-|.+...+|+..
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~l~~eg~tIl~v-tHDL~~v~~~~D~ 208 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKELRQEGKTVLMV-THDLGLVMAYFDR 208 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCcHHhHhhCCE
Confidence 3445555555555567888999999976 4566655555555554444433455544 6788888887765
No 275
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.023 Score=62.07 Aligned_cols=50 Identities=22% Similarity=0.448 Sum_probs=29.5
Q ss_pred HHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
.+...+...+...+..+|||||+|. +..+....+++.+........+|+.
T Consensus 106 ~L~~~~~~~p~~g~~kVIIIDEad~--Lt~~a~naLLk~LEEP~~~~ifILa 155 (624)
T PRK14959 106 RLKEAIGYAPMEGRYKVFIIDEAHM--LTREAFNALLKTLEEPPARVTFVLA 155 (624)
T ss_pred HHHHHHHhhhhcCCceEEEEEChHh--CCHHHHHHHHHHhhccCCCEEEEEe
Confidence 3444444345567789999999993 3445556666665544344444443
No 276
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.33 E-value=0.019 Score=55.66 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=33.6
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
.+..+..++|.|++|+|||++.-+++.+.. ..+.+++|++-..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEEEcCC
Confidence 455678999999999999999988887653 3466778887654
No 277
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.33 E-value=0.043 Score=52.45 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=37.8
Q ss_pred HHHHHhcCC-EEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 007931 58 ILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (584)
Q Consensus 58 il~~l~~~~-~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~ 119 (584)
+-..+..++ .+.++|+-|||||+..- .+.... ..+..++++.+-..+....+..++...+
T Consensus 43 l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~-~~d~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 43 LHAAIADGQGILAVTGEVGSGKTVLRR-ALLASL-NEDQVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred HHHHHhcCCceEEEEecCCCchhHHHH-HHHHhc-CCCceEEEEecCcchhHHHHHHHHHHHh
Confidence 334556666 99999999999996665 443332 2333445455555666666666655544
No 278
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.025 Score=64.35 Aligned_cols=46 Identities=24% Similarity=0.469 Sum_probs=32.8
Q ss_pred HccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 156 MMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 156 l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
+...+...+++++||||+| .+..+....++|.+.....+..+|+.+
T Consensus 112 ~~~~p~~~~~KV~IIDEad--~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 112 AFFAPAESRYKIFIIDEAH--MVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHhchhcCCceEEEEechh--hcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3334456789999999999 345566777777777666677777655
No 279
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.033 Score=61.38 Aligned_cols=51 Identities=24% Similarity=0.447 Sum_probs=34.4
Q ss_pred HHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
.+...+...+...++.++||||+| .+..+....+++.+..-.++..+|+.+
T Consensus 106 ~l~~~~~~~p~~~~~KVvIIdev~--~Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 106 ELRENVKYLPSRSRYKIFIIDEVH--MLSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHHhccccCCceEEEEEChh--hCCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 344444445667889999999999 344556667777776655666666654
No 280
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.31 E-value=0.0062 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 007931 68 TIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 68 viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+++.||.|+|||+++-.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999998887665543
No 281
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.30 E-value=0.02 Score=52.66 Aligned_cols=126 Identities=19% Similarity=0.254 Sum_probs=61.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcC--CC
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFT--NK 139 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~--~~ 139 (584)
+..++.+.|.||+||||||++-.+.-.... ..+. |.+ ..+.+...... ... ..++|........ +.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~-~g~~~~~~~~~-~~~--------~~i~~~~q~~~~~~~tv 92 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGR-VRL-DGADISQWDPN-ELG--------DHVGYLPQDDELFSGSI 92 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCe-EEE-CCEEcccCCHH-HHH--------hheEEECCCCccccCcH
Confidence 357889999999999999988766543321 2233 332 22212110000 001 1122221110000 00
Q ss_pred CCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhc-CCceEEEEe
Q 007931 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISS 203 (584)
Q Consensus 140 ~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~vi~~S 203 (584)
.-.+ .+.|...+......++.+.+++|+||-= .+++......+.+.+.... .+..+|+.|
T Consensus 93 -~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~s 153 (173)
T cd03246 93 -AENI--LSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAALKAAGATRIVIA 153 (173)
T ss_pred -HHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 0001 4445544444444456788999999987 5666655555555544432 234444444
No 282
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.30 E-value=0.03 Score=60.93 Aligned_cols=52 Identities=27% Similarity=0.383 Sum_probs=32.4
Q ss_pred HHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 150 ~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
..+...+...+...+..++||||+|. +..+....+++.+..-.....+|+++
T Consensus 105 ReIi~~~~~~P~~~~~KVIIIDEad~--Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 105 RNIIDNINYLPTTFKYKVYIIDEAHM--LSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHHHHhchhhCCcEEEEEechHh--CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 34444445556667789999999993 34445556666665544555555554
No 283
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.29 E-value=0.017 Score=60.63 Aligned_cols=42 Identities=31% Similarity=0.475 Sum_probs=28.3
Q ss_pred CCchHHHH-HHHHHHhc-CCEEEEEcCCCChHHHHHHHHHHhcC
Q 007931 49 LPVYKYRT-AILYLVET-HATTIIVGETGSGKTTQIPQYLKEAG 90 (584)
Q Consensus 49 lP~~~~~~-~il~~l~~-~~~viv~a~TGsGKT~~ip~~l~~~~ 90 (584)
|.....+. .+...+.. +..++|+|||||||||.+-.++....
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 44444443 34444443 56899999999999988877776553
No 284
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.028 Score=62.21 Aligned_cols=49 Identities=27% Similarity=0.475 Sum_probs=30.3
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
+...+...+...+..+|||||+|. +..+....+++.+........+|+.
T Consensus 108 ii~~~~~~p~~~~~kVvIIDEa~~--L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 108 IIERVQFRPALARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred HHHHHhhCcccCCeEEEEEeChHh--CCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 334444556678899999999993 4445555666665554444444444
No 285
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.28 E-value=0.023 Score=51.65 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=66.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCC
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~ 141 (584)
+..++.+.+.||.||||||++-.+.-.... ..+. |.+- -..+......+ .. ...+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~-v~~~-g~~~~~~~~~~----~~----~~~i~~~~q--------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGE-ILVD-GKEVSFASPRD----AR----RAGIAMVYQ--------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeE-EEEC-CEECCcCCHHH----HH----hcCeEEEEe---------
Confidence 467899999999999999988766433221 2333 3321 11111000000 00 011233211
Q ss_pred ceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHh
Q 007931 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFF 215 (584)
Q Consensus 142 ~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~vi~~SAT~~~~~~~~~~ 215 (584)
.+.|..-+......++.+.+++++||-= .+++.+....+.+.+.... .+.-+|+. |-+.+.+.++.
T Consensus 83 -----LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~--sh~~~~~~~~~ 149 (163)
T cd03216 83 -----LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFI--SHRLDEVFEIA 149 (163)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHhC
Confidence 4555544444444446677999999987 5677766666665555432 23334443 44444444443
No 286
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.039 Score=59.58 Aligned_cols=43 Identities=21% Similarity=0.564 Sum_probs=31.7
Q ss_pred CCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 159 DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 159 ~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
.+....+.++||||+|. +..+....+++.+..-.+..++|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45567899999999993 45666777777777666667777655
No 287
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.27 E-value=0.02 Score=59.54 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcc
Q 007931 449 PASPPPEAMIRALEVLYSLGVLD 471 (584)
Q Consensus 449 ~~~p~~~~~~~al~~L~~~g~i~ 471 (584)
.+|.....+...++.|..+|.|+
T Consensus 326 ~~~~~~~~~~~~l~~l~~~gli~ 348 (365)
T TIGR02928 326 VDPLTQRRISDLLNELDMLGLVE 348 (365)
T ss_pred CCCCcHHHHHHHHHHHHhcCCeE
Confidence 35667788999999999999997
No 288
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.27 E-value=0.0024 Score=58.33 Aligned_cols=117 Identities=23% Similarity=0.287 Sum_probs=50.9
Q ss_pred EEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeec------cCcCCCCCc
Q 007931 69 IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRF------EDFTNKDLT 142 (584)
Q Consensus 69 iv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~------~~~~~~~~~ 142 (584)
||+|+-|-|||+.+-..+.... ..+...|+||-|..-+.+.+.+.....+. ..||.... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~-~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 74 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI-QKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQ 74 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS-S-----EEEE-SS--S-HHHHHCC-------------------------------CC
T ss_pred CccCCCCCCHHHHHHHHHHHHH-HhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccc
Confidence 6899999999988876554332 22223466666666666655554333221 11221100 001111257
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
.|.|..|+.+... -...+++|||||= .+....+ +.+... ...+++|.|+
T Consensus 75 ~i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp~p~L----~~ll~~---~~~vv~stTi 123 (177)
T PF05127_consen 75 RIEFVAPDELLAE------KPQADLLIVDEAA--AIPLPLL----KQLLRR---FPRVVFSTTI 123 (177)
T ss_dssp C--B--HHHHCCT----------SCEEECTGG--GS-HHHH----HHHHCC---SSEEEEEEEB
T ss_pred eEEEECCHHHHhC------cCCCCEEEEechh--cCCHHHH----HHHHhh---CCEEEEEeec
Confidence 8899999887543 2245899999997 4444343 333322 3356677787
No 289
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.26 E-value=0.043 Score=49.81 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=42.5
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
|.+-....+...+...+.-..+.++||||+| .+..+..-+++|.+..-..+..+|++|-.+
T Consensus 82 i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 82 IKIDQIREIIEFLSLSPSEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp BSHHHHHHHHHHCTSS-TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 3333334455555555556789999999999 567778888898888877888888877665
No 290
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.26 E-value=0.021 Score=52.20 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+..++.+.|.||+||||||++-.+.-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999988766543
No 291
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.24 E-value=0.046 Score=58.28 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCc-cCCCeEEEEeC
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQ 102 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~-~~~~~~I~v~~ 102 (584)
+.+++.|++|+|||+++-.+..+... .++.+++|++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 35899999999999777433322111 13345555543
No 292
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.031 Score=61.82 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=31.4
Q ss_pred HHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 150 ~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
..+...+...+....+.+|||||+|. +..+....+++.+..-.....+|+.
T Consensus 107 Reii~~a~~~p~~~~~KViIIDEad~--Lt~~a~naLLK~LEePp~~tvfIL~ 157 (620)
T PRK14948 107 RELIERAQFAPVQARWKVYVIDECHM--LSTAAFNALLKTLEEPPPRVVFVLA 157 (620)
T ss_pred HHHHHHHhhChhcCCceEEEEECccc--cCHHHHHHHHHHHhcCCcCeEEEEE
Confidence 34444444555567889999999993 3445556666666554444444443
No 293
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.024 Score=62.37 Aligned_cols=50 Identities=22% Similarity=0.511 Sum_probs=33.3
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
++......+...+++++||||+|. +..+....+++.+..-....++|+.+
T Consensus 112 li~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 112 LLEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 444444455567899999999993 45556666777665555566666654
No 294
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.021 Score=52.47 Aligned_cols=136 Identities=18% Similarity=0.289 Sum_probs=66.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCC-C
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNK-D 140 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~-~ 140 (584)
+..++.+.|.||+||||||++-.+.-... ...+. |.+- -..+.... . ... ..+||.......... .
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~-i~~~-g~~~~~~~--~----~~~----~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGE-IKVL-GKDIKKEP--E----EVK----RRIGYLPEEPSLYENLT 89 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeE-EEEC-CEEcccch--H----hhh----ccEEEEecCCccccCCc
Confidence 35788999999999999988875543221 12333 3221 11111000 0 010 123332221110000 0
Q ss_pred -CceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcC-CceEEEEecccChHHHHHH
Q 007931 141 -LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSATIEAKSMSAF 214 (584)
Q Consensus 141 -~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~-~~~vi~~SAT~~~~~~~~~ 214 (584)
...+. .+.|..-+......+..+.+++++||-- .+++......+++.+..... +..+|+. |-+.+.+.++
T Consensus 90 v~~~~~-LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~--th~~~~~~~~ 161 (173)
T cd03230 90 VRENLK-LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLS--SHILEEAERL 161 (173)
T ss_pred HHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEE--CCCHHHHHHh
Confidence 00111 4445444433333346678999999998 57777666666666555432 3334443 3444444433
No 295
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.032 Score=60.20 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=30.2
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
+...+...+...+..+|||||+|. ...+.+..+++.+........+|+.
T Consensus 104 l~~~~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 104 LREKVLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred HHHHHhhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 333344445677889999999993 3445566666666554444444443
No 296
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.18 E-value=0.022 Score=62.49 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=28.6
Q ss_pred CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
++++-+++|+||+= -.++.+....+.+.+....++.-+|..|
T Consensus 485 ll~~~~iliLDE~T-SaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 485 LLADAPILLLDEPT-EHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred HhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 56778899999987 4577777667777766655554454443
No 297
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.17 E-value=0.037 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999999986554
No 298
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.15 E-value=0.12 Score=51.32 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=72.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE-----eCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCC
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-----TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v-----~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~ 138 (584)
+.+.+++.||-|||||+++.-.+.+ ....+-..+.| .++-++|...+++.++.++... +...|. ..
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gs-------ft 118 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGS-------FT 118 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecc-------cc
Confidence 4678999999999999888766665 12222233322 2333445556666666655432 111120 00
Q ss_pred CCCceEEEechHHHHHHHccCCCCCCC-cEEEEeCCCcCc--cchhHHHHHHHHHHHhcCCceEEEEecccChH
Q 007931 139 KDLTAIKFLTDGVLLREMMDDPLLTKY-SVIMVDEAHERS--ISTDILLGLLKKIQRCRSDLRLIISSATIEAK 209 (584)
Q Consensus 139 ~~~~~I~~~T~~~ll~~l~~~~~l~~~-~~iIiDE~Her~--~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~ 209 (584)
+ +-..|+..+..+..-... -++|+||++-.. ...-.+-.++......+.++-+|++|--.|.-
T Consensus 119 e--------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 119 E--------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred h--------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 1 224566666555444444 457788887222 22234444555555567778899999888653
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.11 E-value=0.05 Score=55.33 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=20.7
Q ss_pred HHHHHHhcC---CEEEEEcCCCChHHHHHHHHHH
Q 007931 57 AILYLVETH---ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 57 ~il~~l~~~---~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+...+.++ ..+++.||+|+|||+++-.+..
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 344444444 3455599999999988765544
No 300
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.08 E-value=0.015 Score=53.79 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999988876543
No 301
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.08 E-value=0.035 Score=59.72 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=95.6
Q ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCc-EEEEeCCCCccccccC
Q 007931 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR-KVVISTNIAETSLTLE 352 (584)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~-~vlvaT~i~e~Gidip 352 (584)
..+..+|+|..-.+.+..+.++|... ++.-+-+.|+....+|..+..++....+ -.|++|-..+-|||+-
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr---------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLT 1112 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYR---------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLT 1112 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhh---------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccccc
Confidence 45667999998888888887887665 8888999999999999999999976544 5688999999999999
Q ss_pred CeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
+.+.||. ||...+ |.--.++.-|+-|-|.++.-.+|+|+++...+.
T Consensus 1113 AADTViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1113 AADTVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred ccceEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 9999996 554444 555677888888888888889999999887665
No 302
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.08 E-value=0.027 Score=53.94 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=21.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcC-ccCCCeEEEEe
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACT 101 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~-~~~~~~~I~v~ 101 (584)
+.++|.||+|+|||.++-.+..+.. ..++.+++|+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3589999999999976544433221 11344555554
No 303
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.07 E-value=0.1 Score=53.71 Aligned_cols=137 Identities=21% Similarity=0.249 Sum_probs=86.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~ 145 (584)
.+++++|=-||||||.+..+.........+..++.+-+.|-+|....+.+++..+.++... + ...
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~------~~~-------- 165 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-G------TEK-------- 165 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC-C------CCC--------
Confidence 3678899999999988765544332223445688888999999988888888877765321 1 011
Q ss_pred EechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhcCC
Q 007931 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARK 219 (584)
Q Consensus 146 ~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~~~ 219 (584)
.|-.+.+.-........+++||||=|-...++.+++..+...-...+|+=-++.+-|+. ++...++-|+...
T Consensus 166 --~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l 239 (451)
T COG0541 166 --DPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL 239 (451)
T ss_pred --CHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc
Confidence 11112221111112456899999999944465555555444444467777777888888 6666777776543
No 304
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.07 E-value=0.036 Score=53.20 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=25.7
Q ss_pred HHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 56 ~~il~~l~~--~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+++.+.+.+ ++.++|.||-|+|||+++-.++...
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 445555555 4899999999999998887666544
No 305
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.02 E-value=0.24 Score=54.23 Aligned_cols=147 Identities=18% Similarity=0.128 Sum_probs=80.4
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhC---C-----cceeEE--
Q 007931 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG---V-----KVGEEV-- 127 (584)
Q Consensus 58 il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~---~-----~vg~~v-- 127 (584)
+++.. +.+..++.+|=|.|||+.+-.++.......+ ..|+++-++.-.++++.+++...+. . ..+..+
T Consensus 181 ~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f~G-i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~v 258 (752)
T PHA03333 181 IFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISFLE-IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTL 258 (752)
T ss_pred HHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHhcC-CeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEe
Confidence 33333 3456888999999999776544332222123 3466666666666666555443332 1 111111
Q ss_pred -e--eEeeccCc--CCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEE
Q 007931 128 -G--YTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (584)
Q Consensus 128 -g--~~~~~~~~--~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~ 201 (584)
| ..+.+... .....+.|.|++.. .+.. -.+++++|+|||+ .+..+.+..++-.+.. .+-++|+
T Consensus 259 kgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAA--fI~~~~l~aIlP~l~~--~~~k~Ii 327 (752)
T PHA03333 259 KGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAA--FVNPGALLSVLPLMAV--KGTKQIH 327 (752)
T ss_pred eCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcc--cCCHHHHHHHHHHHcc--CCCceEE
Confidence 1 01111111 11012456665433 1111 2467999999999 3445666665544433 3678899
Q ss_pred EecccChHHHHHHhhc
Q 007931 202 SSATIEAKSMSAFFHA 217 (584)
Q Consensus 202 ~SAT~~~~~~~~~~~~ 217 (584)
+|.+.+.+.+..++++
T Consensus 328 ISS~~~~~s~tS~L~n 343 (752)
T PHA03333 328 ISSPVDADSWISRVGE 343 (752)
T ss_pred EeCCCCcchHHHHhhh
Confidence 9988888877777766
No 306
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=95.98 E-value=0.008 Score=67.91 Aligned_cols=114 Identities=25% Similarity=0.266 Sum_probs=68.5
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHH--HHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEee
Q 007931 57 AILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIR 132 (584)
Q Consensus 57 ~il~~l~~~~~viv~a~TGsGKT~~--ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~ 132 (584)
+++-++.=++--|....||=|||.. +|.++.. + .+..+-+||..--||.. .+...+.+.+|..||........
T Consensus 143 QLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnA--L-~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~ 219 (1025)
T PRK12900 143 QLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNA--L-TGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRP 219 (1025)
T ss_pred HHhhhHHhhcCCccccCCCCCcchHhHHHHHHHH--H-cCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCH
Confidence 3555554445567888999999933 4555432 3 33445556655556554 44555677888888765432222
Q ss_pred ccCcCCCCCceEEEechHHH-----HHHHccCC---CCCCCcEEEEeCCC
Q 007931 133 FEDFTNKDLTAIKFLTDGVL-----LREMMDDP---LLTKYSVIMVDEAH 174 (584)
Q Consensus 133 ~~~~~~~~~~~I~~~T~~~l-----l~~l~~~~---~l~~~~~iIiDE~H 174 (584)
.+....- .++|+|+|...+ -+.+...+ ..+.+.+.|||||+
T Consensus 220 ~~Rr~aY-~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 220 EERREQY-LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred HHHHHhC-CCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 2222223 799999998544 22222222 26788999999999
No 307
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.97 E-value=0.074 Score=56.63 Aligned_cols=36 Identities=25% Similarity=0.164 Sum_probs=22.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCcc-CCCeEEEEe
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~-~~~~~I~v~ 101 (584)
+.+++.||+|+|||+++-.+..+.... ++.+++|++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 459999999999997765443322111 234556654
No 308
>CHL00181 cbbX CbbX; Provisional
Probab=95.97 E-value=0.095 Score=52.40 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=16.9
Q ss_pred CCEEEEEcCCCChHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~ 85 (584)
+.++++.||+|+|||+++-.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 346899999999999776544
No 309
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.97 E-value=0.015 Score=65.52 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=41.7
Q ss_pred CCchHHHHH----HHHHHhc-----CCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH
Q 007931 49 LPVYKYRTA----ILYLVET-----HATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ 109 (584)
Q Consensus 49 lP~~~~~~~----il~~l~~-----~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~ 109 (584)
+-..+.|.+ |.+++.+ ++.++|.||||+||| |++|.+.... ..+.++|+-|.+..|..|
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~--~~~k~vVIST~T~~LQeQ 93 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIAR--AEKKKLVISTATVALQEQ 93 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHH--HcCCeEEEEcCCHHHHHH
Confidence 334444544 4455555 478999999999999 9999765433 245678888998888766
No 310
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.96 E-value=0.05 Score=52.54 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=30.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
+..+..+++.|++|+|||++.-+++.... .++.++++++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCC
Confidence 55688999999999999988877776542 344566777643
No 311
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.95 E-value=0.019 Score=57.73 Aligned_cols=52 Identities=33% Similarity=0.394 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc-cCCCeEEEEeCchHH
Q 007931 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRL 106 (584)
Q Consensus 55 ~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~-~~~~~~I~v~~~r~l 106 (584)
.+.+..++..+.+++|+|+|||||||++-.++..... .+..+++.+-.+.++
T Consensus 122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 122 RDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 3445566778889999999999999988765543221 123455555444443
No 312
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.95 E-value=0.068 Score=48.82 Aligned_cols=110 Identities=20% Similarity=0.363 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEee
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIR 132 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~ 132 (584)
...+.+-.+......++|.|++|+||+ .+.+.+.+......++.|.+-.. .+..+.+. ...+|...|.
T Consensus 10 ~~~~~~~~~a~~~~pVlI~GE~GtGK~-~lA~~IH~~s~r~~~pfi~vnc~-~~~~~~~e---~~LFG~~~~~------- 77 (168)
T PF00158_consen 10 RLREQAKRAASSDLPVLITGETGTGKE-LLARAIHNNSPRKNGPFISVNCA-ALPEELLE---SELFGHEKGA------- 77 (168)
T ss_dssp HHHHHHHHHTTSTS-EEEECSTTSSHH-HHHHHHHHCSTTTTS-EEEEETT-TS-HHHHH---HHHHEBCSSS-------
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcHH-HHHHHHHHhhhcccCCeEEEehh-hhhcchhh---hhhhcccccc-------
Confidence 344555555666778999999999999 44556666655455565544332 33222221 2223322110
Q ss_pred ccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH
Q 007931 133 FEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (584)
Q Consensus 133 ~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (584)
.... .. ...|.|.. .+-+.+++||+++ +..+....+++.+..
T Consensus 78 ---~~~~--~~---~~~G~l~~--------A~~GtL~Ld~I~~--L~~~~Q~~Ll~~l~~ 119 (168)
T PF00158_consen 78 ---FTGA--RS---DKKGLLEQ--------ANGGTLFLDEIED--LPPELQAKLLRVLEE 119 (168)
T ss_dssp ---STTT--SS---EBEHHHHH--------TTTSEEEEETGGG--S-HHHHHHHHHHHHH
T ss_pred ---cccc--cc---ccCCceee--------ccceEEeecchhh--hHHHHHHHHHHHHhh
Confidence 0000 00 12355443 2558999999994 444455555555543
No 313
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.91 E-value=0.011 Score=65.82 Aligned_cols=115 Identities=26% Similarity=0.281 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhC--CcceeEEeeE
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG--VKVGEEVGYT 130 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~--~~vg~~vg~~ 130 (584)
.||+++..++...+..+|.|=+|+||||.+..++.... ..++ .|.++-....|...+..++....- .++|.....+
T Consensus 673 dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~-~~gk-kVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih 750 (1100)
T KOG1805|consen 673 DQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV-ALGK-KVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIH 750 (1100)
T ss_pred HHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH-HcCC-eEEEEehhhHHHHHHHHHHhccCcceeecCCccccc
Confidence 46678889999999999999999999988776654332 2333 456666667777766665543211 1112111100
Q ss_pred eeccCc---------------CCCCCceEEEechHHHHHHHccCCC--CCCCcEEEEeCCC
Q 007931 131 IRFEDF---------------TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAH 174 (584)
Q Consensus 131 ~~~~~~---------------~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iIiDE~H 174 (584)
...+.. ..-+.+.|+.+|-=-+ .+++ .+.+++.|||||-
T Consensus 751 ~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi-----~~plf~~R~FD~cIiDEAS 806 (1100)
T KOG1805|consen 751 PDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI-----NHPLFVNRQFDYCIIDEAS 806 (1100)
T ss_pred hHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC-----CchhhhccccCEEEEcccc
Confidence 000000 0112567777774222 2232 4679999999997
No 314
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.91 E-value=0.18 Score=55.98 Aligned_cols=154 Identities=19% Similarity=0.148 Sum_probs=84.0
Q ss_pred CCCccchhhHHHHhcCCCchHHHHHHHHHHhcCC-EEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHH
Q 007931 33 SSIGYGYASIEKQRQRLPVYKYRTAILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAV 111 (584)
Q Consensus 33 ~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~-~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~ 111 (584)
+..+..-.++.+...+.|-....+.+...+...+ .++++|.=|=|||..+-..+.......+...|+||-|...+.+.+
T Consensus 198 ~~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~L 277 (758)
T COG1444 198 PLDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTL 277 (758)
T ss_pred CCCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHH
Confidence 3333333444444444444444444444444444 899999999999977764442221111123577787877777777
Q ss_pred HHHHHHH---hCCcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHH
Q 007931 112 ASRVAEE---MGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLL 187 (584)
Q Consensus 112 ~~~~~~~---~~~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l 187 (584)
.+...+. +|.+-+ +-.....+. ....+...|-|.+|.... . .-+++|||||= .+...++..++
T Consensus 278 f~fa~~~l~~lg~~~~--v~~d~~g~~~~~~~~~~~i~y~~P~~a~-~--------~~DllvVDEAA--aIplplL~~l~ 344 (758)
T COG1444 278 FEFAGKGLEFLGYKRK--VAPDALGEIREVSGDGFRIEYVPPDDAQ-E--------EADLLVVDEAA--AIPLPLLHKLL 344 (758)
T ss_pred HHHHHHhHHHhCCccc--cccccccceeeecCCceeEEeeCcchhc-c--------cCCEEEEehhh--cCChHHHHHHH
Confidence 6654443 332211 001110000 111224558888887654 1 26899999997 45544544444
Q ss_pred HHHHHhcCCceEEEEeccc
Q 007931 188 KKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 188 ~~~~~~~~~~~vi~~SAT~ 206 (584)
. . .+.++||.|+
T Consensus 345 ~----~---~~rv~~sTTI 356 (758)
T COG1444 345 R----R---FPRVLFSTTI 356 (758)
T ss_pred h----h---cCceEEEeee
Confidence 3 2 3468889999
No 315
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.89 E-value=0.076 Score=59.56 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=14.8
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~ 85 (584)
++.|.|+||+|||..+-..
T Consensus 783 vLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4569999999999665544
No 316
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.88 E-value=0.019 Score=63.82 Aligned_cols=65 Identities=22% Similarity=0.369 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHh-cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHH
Q 007931 51 VYKYRTAILYLVE-THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (584)
Q Consensus 51 ~~~~~~~il~~l~-~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~ 117 (584)
+...|.+.+.... ..+.++|.||+|+|||+.+..++... ...+.++++++ |...|+..+.+++..
T Consensus 158 ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~-~~~g~~VLv~a-~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 158 LNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQL-VKRGLRVLVTA-PSNIAVDNLLERLAL 223 (637)
T ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEEc-CcHHHHHHHHHHHHh
Confidence 4555555555544 44899999999999997776555443 22344555555 455667778777765
No 317
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.035 Score=51.29 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=68.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHH-HHHHHHHHhCCcceeEEeeEeeccCcC---
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQA-VASRVAEEMGVKVGEEVGYTIRFEDFT--- 137 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~-~~~~~~~~~~~~vg~~vg~~~~~~~~~--- 137 (584)
+..++.+.|.||+||||||++-.+.-.... ..+. |.+-. ..+.... ...... ..++|........
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~-i~~~g-~~~~~~~~~~~~~~--------~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGS-ILIDG-EDLTDLEDELPPLR--------RRIGMVFQDFALFPHL 91 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceE-EEECC-EEccccchhHHHHh--------hcEEEEecCCccCCCC
Confidence 357889999999999999988766433211 2233 33211 1111000 000001 1123222111110
Q ss_pred CCCCceEEE-echHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCC-ceEEEEecccChHHHHHH
Q 007931 138 NKDLTAIKF-LTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD-LRLIISSATIEAKSMSAF 214 (584)
Q Consensus 138 ~~~~~~I~~-~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~-~~vi~~SAT~~~~~~~~~ 214 (584)
+. .-.+.+ .+.|...+......++.+..++|+||-- .+++.+....+.+.+.....+ -+.++++ |-+.+.+.++
T Consensus 92 t~-~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~-sH~~~~~~~~ 167 (178)
T cd03229 92 TV-LENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQLGITVVLV-THDLDEAARL 167 (178)
T ss_pred CH-HHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHh
Confidence 11 112222 5566655544444456788999999988 577776666665555543332 2344444 2344444433
No 318
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.86 E-value=0.08 Score=55.31 Aligned_cols=52 Identities=13% Similarity=0.269 Sum_probs=31.4
Q ss_pred HHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
.+.+.+...+...+..++||||+|. ++......+++.+..-.++. ++++.||
T Consensus 104 ~l~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~LEep~~~~-~fIL~a~ 155 (394)
T PRK07940 104 ELVTIAARRPSTGRWRIVVIEDADR--LTERAANALLKAVEEPPPRT-VWLLCAP 155 (394)
T ss_pred HHHHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHHhhcCCCCC-eEEEEEC
Confidence 3444444556667889999999993 34445556666654443444 4444444
No 319
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.86 E-value=0.035 Score=51.54 Aligned_cols=36 Identities=33% Similarity=0.392 Sum_probs=27.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
+++|.||+|+|||++.-+++.... ..+.+++|++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEECC
Confidence 378999999999998888887654 345667777643
No 320
>PTZ00293 thymidine kinase; Provisional
Probab=95.83 E-value=0.053 Score=51.04 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=27.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.|...++.||-+||||+.+-+.+..... .+.+++++.|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~-ag~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTY-SEKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHH-cCCceEEEEec
Confidence 4667899999999999877666655433 34456666654
No 321
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.82 E-value=0.021 Score=57.64 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+.+..++..+.+++|+|+|||||||++-.++.
T Consensus 135 ~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~ 166 (323)
T PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHH
Confidence 44556677788999999999999998865543
No 322
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.81 E-value=0.016 Score=61.90 Aligned_cols=66 Identities=21% Similarity=0.402 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHH
Q 007931 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (584)
Q Consensus 51 ~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~ 117 (584)
+...|......+.++...+|+||+|+|||.....+++.......+++++|+ |..+|.+++++.+-+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcA-pSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCA-PSNIAVDQLAEKIHK 476 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEc-ccchhHHHHHHHHHh
Confidence 456788889999999999999999999994433333333222456665555 567888888887654
No 323
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.79 E-value=0.049 Score=55.37 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=25.1
Q ss_pred CcEEEEeCCCcCc-cchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 165 YSVIMVDEAHERS-ISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 165 ~~~iIiDE~Her~-~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
=.+++|||+|... ...|+++..+. +-.+++..||-
T Consensus 105 ~tiLflDEIHRfnK~QQD~lLp~vE-------~G~iilIGATT 140 (436)
T COG2256 105 RTILFLDEIHRFNKAQQDALLPHVE-------NGTIILIGATT 140 (436)
T ss_pred ceEEEEehhhhcChhhhhhhhhhhc-------CCeEEEEeccC
Confidence 3689999999433 45577766554 45688889986
No 324
>PRK06620 hypothetical protein; Validated
Probab=95.78 E-value=0.045 Score=52.21 Aligned_cols=19 Identities=37% Similarity=0.350 Sum_probs=16.2
Q ss_pred CEEEEEcCCCChHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQ 84 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~ 84 (584)
+.+++.||+|||||+++-.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5699999999999977754
No 325
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.77 E-value=0.2 Score=46.11 Aligned_cols=96 Identities=23% Similarity=0.302 Sum_probs=54.4
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCC
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~ 140 (584)
.+..+..+.|.||+||||||++-.+.-... ...+. |.+-- ..++|....
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~-i~~~g----------------------~~i~~~~q~------- 69 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDN-DEWDG----------------------ITPVYKPQY------- 69 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCcE-EEECC----------------------EEEEEEccc-------
Confidence 557889999999999999999876543221 12333 32211 112332110
Q ss_pred CceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH
Q 007931 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (584)
Q Consensus 141 ~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (584)
.. .+-|.--+......+..+.+++++||-- .+++......+...+..
T Consensus 70 -~~---LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 70 -ID---LSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRR 116 (177)
T ss_pred -CC---CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHH
Confidence 00 3444433333333345677999999987 56666665555555544
No 326
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.76 E-value=0.012 Score=66.71 Aligned_cols=115 Identities=24% Similarity=0.205 Sum_probs=71.0
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHH--HHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEee
Q 007931 57 AILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIR 132 (584)
Q Consensus 57 ~il~~l~~~~~viv~a~TGsGKT~~--ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~ 132 (584)
+++-++.=++--|....||=|||.. +|.++.. + .+..+-+||..--||.. .+...+...+|..+|........
T Consensus 174 QliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnA--L-~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~~~~ 250 (1112)
T PRK12901 174 QLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNA--L-TGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPN 250 (1112)
T ss_pred HHhhhhhhcCCceeeecCCCCchhHHHHHHHHHH--H-cCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCCCCC
Confidence 4666666666678899999999933 3554432 3 33445566666556654 45556777888888765443222
Q ss_pred ccCcCCCCCceEEEechHHH-----HHHHccCC---CCCCCcEEEEeCCC
Q 007931 133 FEDFTNKDLTAIKFLTDGVL-----LREMMDDP---LLTKYSVIMVDEAH 174 (584)
Q Consensus 133 ~~~~~~~~~~~I~~~T~~~l-----l~~l~~~~---~l~~~~~iIiDE~H 174 (584)
.+.+.....++|+|+|...+ -+.+..++ ..+.+.+.|||||+
T Consensus 251 ~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 251 SEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred HHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 22222223799999998544 22222111 25778899999998
No 327
>PLN03025 replication factor C subunit; Provisional
Probab=95.72 E-value=0.11 Score=52.88 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=18.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+++++.||+|+|||+.+-.+..+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999887655544
No 328
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.072 Score=58.79 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=31.0
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
+...+...+...+..+|||||+|. +.......+++.+..-.....+|+++
T Consensus 115 l~e~~~~~P~~~~~KVvIIdEad~--Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 115 LRENVRYGPQKGRYRVYIIDEVHM--LSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHHHhhhhcCCCEEEEEeChhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 334444456778899999999994 33344555666555444455555554
No 329
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.67 E-value=0.017 Score=57.38 Aligned_cols=46 Identities=33% Similarity=0.506 Sum_probs=30.2
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHH
Q 007931 60 YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (584)
Q Consensus 60 ~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~l 106 (584)
..++.+.+++++|+|||||||++-.++.... ....+++.+-.+.++
T Consensus 122 ~~v~~~~~ili~G~tGSGKTT~l~all~~i~-~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 122 SAVRGRGNILISGPTGSGKTTLLNALLEEIP-PEDERIVTIEDPPEL 167 (270)
T ss_dssp HCHHTTEEEEEEESTTSSHHHHHHHHHHHCH-TTTSEEEEEESSS-S
T ss_pred hccccceEEEEECCCccccchHHHHHhhhcc-ccccceEEeccccce
Confidence 3446689999999999999999976654332 222455555445433
No 330
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.66 E-value=0.085 Score=57.90 Aligned_cols=48 Identities=27% Similarity=0.431 Sum_probs=29.9
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEE
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~ 201 (584)
+.......|...++.++||||+|. +..+....+++.+..-..+..+|+
T Consensus 107 i~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtLEepp~~~ifIl 154 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTLEEPPAHVIFIL 154 (559)
T ss_pred HHHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHhcCCCCCeEEEE
Confidence 444444456678899999999993 445566666766544333433333
No 331
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.02 Score=61.03 Aligned_cols=51 Identities=24% Similarity=0.462 Sum_probs=39.1
Q ss_pred HHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
.+.....-.|.-.++.+.||||+| .+....+-++||.+..-++++.+|+.+
T Consensus 106 ~i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 106 EIIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred HHHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEEec
Confidence 355555556778899999999999 677778889999887776776666654
No 332
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.64 E-value=0.014 Score=43.21 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCChHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~ 85 (584)
+++++|.|++||||||++-.+
T Consensus 23 g~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 458999999999999888644
No 333
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.64 E-value=0.11 Score=55.18 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=23.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
+.+++.||+|+|||+++-.+.... ...+.+++++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l-~~~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHAL-RESGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEee
Confidence 458999999999997765444332 22345566665
No 334
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.082 Score=56.11 Aligned_cols=135 Identities=21% Similarity=0.175 Sum_probs=69.4
Q ss_pred EcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHH-------HH-HHHHHHHhCCccee-EEee-EeeccCcCCCC
Q 007931 71 VGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ-------AV-ASRVAEEMGVKVGE-EVGY-TIRFEDFTNKD 140 (584)
Q Consensus 71 ~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~-------~~-~~~~~~~~~~~vg~-~vg~-~~~~~~~~~~~ 140 (584)
...||||||.+...++++.-...-...++.+....+... .+ ++.+..+- +..++ .+.. .+..-+. ..+
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~-i~~~d~~i~ikkvn~fse-hnd 80 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSEN-ININDENIEIKKVNNFSE-HND 80 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhh-hhcCCceeeeeeecccCc-cCC
Confidence 468999999766666654422122345666655444332 11 11121111 11111 1110 1111111 234
Q ss_pred CceEEEechHHHHHHHccCC-------CCCCCcE-EEEeCCCcCccch-----h------HHHHHHHHHHHhcCCceEEE
Q 007931 141 LTAIKFLTDGVLLREMMDDP-------LLTKYSV-IMVDEAHERSIST-----D------ILLGLLKKIQRCRSDLRLII 201 (584)
Q Consensus 141 ~~~I~~~T~~~ll~~l~~~~-------~l~~~~~-iIiDE~Her~~~~-----d------~l~~~l~~~~~~~~~~~vi~ 201 (584)
...|.|+|.+.|...+.... .+.+..+ ++-||+|.....+ | -+...++...+..++--++.
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~le 160 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLE 160 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeeh
Confidence 68899999999887664432 1444444 5679999322221 1 23334444455666767888
Q ss_pred EecccC
Q 007931 202 SSATIE 207 (584)
Q Consensus 202 ~SAT~~ 207 (584)
.|||.+
T Consensus 161 f~at~~ 166 (812)
T COG3421 161 FSATIP 166 (812)
T ss_pred hhhcCC
Confidence 999984
No 335
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.58 E-value=0.21 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=18.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+++.||+|+|||+.+-.+...
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999877655443
No 336
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.58 E-value=0.052 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=18.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+++++.||+|+||||++-.+..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCccchhHHHHHHHhcc
Confidence 479999999999998876655443
No 337
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.54 E-value=0.027 Score=57.60 Aligned_cols=46 Identities=26% Similarity=0.308 Sum_probs=30.6
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchH
Q 007931 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (584)
Q Consensus 58 il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~ 105 (584)
+-.++..+.+++|+|||||||||++-.++..- ....+++.+=.+.+
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i--~~~~rivtiEd~~E 200 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAI--PPQERLITIEDTLE 200 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHHHccc--CCCCCEEEECCCcc
Confidence 34456778999999999999999986654332 23344454444443
No 338
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.099 Score=56.25 Aligned_cols=49 Identities=27% Similarity=0.433 Sum_probs=30.5
Q ss_pred HHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEE
Q 007931 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (584)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~ 201 (584)
.+...+...|...++.++||||+|. +..+....+++.+....+...+|+
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEE
Confidence 3444555566678899999999993 344455556666554444444444
No 339
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.54 E-value=0.12 Score=53.58 Aligned_cols=50 Identities=26% Similarity=0.424 Sum_probs=30.8
Q ss_pred HHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
.+...+...+...+..+|||||+|. ...+....+++.+.....+..+|+.
T Consensus 104 ~l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 104 EILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred HHHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHHhCCccceeEEEE
Confidence 4555555566678889999999993 3344455566665443344444443
No 340
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.52 E-value=0.031 Score=56.65 Aligned_cols=53 Identities=30% Similarity=0.422 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcC-ccCCCeEEEEeCchHH
Q 007931 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRL 106 (584)
Q Consensus 54 ~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~-~~~~~~~I~v~~~r~l 106 (584)
+.+.+..++..+.+++|+|+|||||||++-.++.... ..+..+++.+-.+.++
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3344555678899999999999999988865553321 1233455555555544
No 341
>PRK04195 replication factor C large subunit; Provisional
Probab=95.49 E-value=0.18 Score=54.57 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+.+++.||+|+|||+++-.+..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999998887666554
No 342
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.49 E-value=0.021 Score=53.82 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=24.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
..++|+|||||||||.+-.++.......++.++.+-.|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 46899999999999988655443322223444444444
No 343
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.48 E-value=0.029 Score=63.68 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=37.7
Q ss_pred chHHHHH----HHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH
Q 007931 51 VYKYRTA----ILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ 109 (584)
Q Consensus 51 ~~~~~~~----il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~ 109 (584)
+|+.|.+ +.+++..+++.++.+|||+||| .+.|.+-.........+++|++.+.....|
T Consensus 11 ~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q 75 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQ 75 (705)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHH
Confidence 4555554 4566778999999999999999 333332221111122578898887766555
No 344
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.07 Score=55.56 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=22.1
Q ss_pred HHHHHHhcC---CEEEEEcCCCChHHHHHHHHH
Q 007931 57 AILYLVETH---ATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 57 ~il~~l~~~---~~viv~a~TGsGKT~~ip~~l 86 (584)
.+...+..+ +.+++.||.|+|||+.+-.+.
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la 60 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCARILA 60 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345555554 378999999999998877653
No 345
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.12 Score=52.19 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=83.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~ 145 (584)
.++.++|=-|+||||....+.+.......+.+++|.-+-|-+|-...+.-+...++++.. .|. ..
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg--syt-------e~------ 166 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG--SYT-------EA------ 166 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe--ccc-------cc------
Confidence 578889999999998888776655333334578898888887765444444444444321 110 00
Q ss_pred EechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhhc
Q 007931 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHA 217 (584)
Q Consensus 146 ~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~~ 217 (584)
-|-.+...-.....-.++++||+|-.-....+..++..++.......|+.-+..|-|++ .++..+.-|..
T Consensus 167 --dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 167 --DPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred --chHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 12222211111112458999999999833355556666665555677888888999999 55556666654
No 346
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.45 E-value=0.055 Score=50.76 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46788999999999999998876643
No 347
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.44 E-value=0.033 Score=63.27 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=32.8
Q ss_pred HHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 150 ~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
|.--+......++++.+++|+||+= -+++.+....+.+.+....++..+|+.|
T Consensus 605 GQrQRlalARall~~p~iliLDE~T-s~LD~~te~~i~~~l~~~~~~~T~iiIt 657 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPT-SAMDNRSEERFKDRLKRWLAGKTLVLVT 657 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4433333333356788999999997 4677766666666666655554454444
No 348
>PHA02533 17 large terminase protein; Provisional
Probab=95.42 E-value=0.32 Score=52.92 Aligned_cols=156 Identities=14% Similarity=0.171 Sum_probs=82.8
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHh-cCccCCCeEEEEeCchHHHHHHHHHHHHHHhCC----
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE-AGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---- 121 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~-~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~---- 121 (584)
..+++...|..++..+..++..++.-+=..|||+++..+++. ....++..++++++.+..+.. +.+++......
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~-vF~~ik~~ie~~P~l 134 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAE-VLDRTKQAIELLPDF 134 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHHHHHHhCHHH
Confidence 457888999999998877788889999999999888754433 323344556666776665544 33443321110
Q ss_pred -cceeEEe--eEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCce
Q 007931 122 -KVGEEVG--YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (584)
Q Consensus 122 -~vg~~vg--~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (584)
..+.... ..+.+ .. ...|.+.|.+. +..+ =.+.+++|+||+|.-.-..+++..+. ..+......+
T Consensus 135 ~~~~i~~~~~~~I~l----~N-GS~I~~lss~~--~t~r----G~~~~~liiDE~a~~~~~~e~~~ai~-p~lasg~~~r 202 (534)
T PHA02533 135 LQPGIVEWNKGSIEL----EN-GSKIGAYASSP--DAVR----GNSFAMIYIDECAFIPNFIDFWLAIQ-PVISSGRSSK 202 (534)
T ss_pred hhcceeecCccEEEe----CC-CCEEEEEeCCC--CccC----CCCCceEEEeccccCCCHHHHHHHHH-HHHHcCCCce
Confidence 1010000 01111 12 45565555431 1111 12457899999994322223333332 2223333456
Q ss_pred EEEEecccChHHHHHHh
Q 007931 199 LIISSATIEAKSMSAFF 215 (584)
Q Consensus 199 vi~~SAT~~~~~~~~~~ 215 (584)
+++.|.......+-+.+
T Consensus 203 ~iiiSTp~G~n~fye~~ 219 (534)
T PHA02533 203 IIITSTPNGLNHFYDIW 219 (534)
T ss_pred EEEEECCCchhhHHHHH
Confidence 76666554333354444
No 349
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.36 E-value=0.042 Score=51.22 Aligned_cols=31 Identities=39% Similarity=0.515 Sum_probs=24.6
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 57 AILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 57 ~il~~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
-+-..+..+.+++++|||||||||++-.++-
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445667889999999999999998865543
No 350
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.12 Score=53.37 Aligned_cols=18 Identities=44% Similarity=0.741 Sum_probs=14.6
Q ss_pred CEEEEEcCCCChHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIP 83 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip 83 (584)
.+++|.|+||+|||..+-
T Consensus 43 ~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK 60 (366)
T ss_pred ccEEEECCCCCCHhHHHH
Confidence 469999999999995543
No 351
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.35 E-value=0.058 Score=59.74 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=23.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+..++.+-++|||||||||++-.+..-.
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5788889999999999999887665433
No 352
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.35 E-value=0.13 Score=52.46 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=37.9
Q ss_pred chHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 148 TDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 148 T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
....+.+.+...+.....+++||||+| .++.+....++|.+..-..+..+|+.|.-
T Consensus 90 ~iR~l~~~~~~~~~~~~~kv~iI~~a~--~m~~~aaNaLLK~LEEPp~~~~fiL~t~~ 145 (328)
T PRK05707 90 QVRELVSFVVQTAQLGGRKVVLIEPAE--AMNRNAANALLKSLEEPSGDTVLLLISHQ 145 (328)
T ss_pred HHHHHHHHHhhccccCCCeEEEECChh--hCCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 333455555556667889999999999 45667778888877665555555554443
No 353
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.33 E-value=0.096 Score=57.35 Aligned_cols=45 Identities=31% Similarity=0.486 Sum_probs=27.8
Q ss_pred HHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEE
Q 007931 155 EMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (584)
Q Consensus 155 ~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~ 201 (584)
.+...+...++.++||||+|. +.......+++.+..-.+...+|+
T Consensus 110 ~~~~~p~~~~~KVvIIDEa~~--Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 110 EIMFPPASSRYRVYIIDEVHM--LSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred HHHhchhcCCCEEEEEEChhh--cCHHHHHHHHHhhccCCCCEEEEE
Confidence 334456678899999999993 344455566666544334444443
No 354
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.31 E-value=0.11 Score=47.86 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=27.5
Q ss_pred CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcC-CceEEEEecc
Q 007931 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSAT 205 (584)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~-~~~vi~~SAT 205 (584)
+.+.+++++||.. .+++......+.+.+..... +..+|+.|--
T Consensus 114 ~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 114 IKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3567999999999 57776666655555544322 3556665543
No 355
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.30 E-value=0.028 Score=56.85 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHH---HHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQY---LKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~---l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~ 119 (584)
..|.+++.. .++.++|.|..|||||+.+-.. ++.....+..+++++|.++. ++..+..|+...+
T Consensus 3 ~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~-aa~e~~~ri~~~l 69 (315)
T PF00580_consen 3 DEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNA-AAQEMRERIRELL 69 (315)
T ss_dssp HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHH-HHHHHHHHHHHhc
Confidence 456777776 5777999999999999766533 23332123345777887775 4556677766644
No 356
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.30 E-value=0.17 Score=51.77 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEE
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVI 98 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I 98 (584)
..++.+-.+...+..|+|.|++||||++++- ++........++.+
T Consensus 10 ~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr-~iH~~s~r~~~pfv 54 (329)
T TIGR02974 10 EVLEQVSRLAPLDRPVLIIGERGTGKELIAA-RLHYLSKRWQGPLV 54 (329)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCChHHHHHH-HHHHhcCccCCCeE
Confidence 3445566666677889999999999996554 44444333334443
No 357
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.059 Score=54.94 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=39.6
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
+++-....+.+.....+......+||||||+ .+..+..-.+++.+.....+..+|+.+-
T Consensus 89 i~~~~vr~~~~~~~~~~~~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 89 IIVEQVRELAEFLSESPLEGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred chHHHHHHHHHHhccCCCCCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 3333344455554444456789999999999 5566777777777776667776766553
No 358
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.11 Score=57.50 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=32.0
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
+...+...+...++.++||||+|. +..+....+++.+..-.....+|+.+
T Consensus 109 li~~~~~~P~~~~~KVvIIdea~~--Ls~~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 109 LIEQVRIPPQIGKYKIYIIDEVHM--LSQAAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred HHHHHhhCcccCCcEEEEEECccc--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 344445567788999999999994 34455566666665544445555544
No 359
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.26 E-value=0.058 Score=59.83 Aligned_cols=143 Identities=16% Similarity=0.146 Sum_probs=69.8
Q ss_pred HHHHHHHHHhc---CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeC-chHHHHHHHHHHHHHHhCCcceeEEee
Q 007931 54 YRTAILYLVET---HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ-PRRLAVQAVASRVAEEMGVKVGEEVGY 129 (584)
Q Consensus 54 ~~~~il~~l~~---~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~-~r~la~~~~~~~~~~~~~~~vg~~vg~ 129 (584)
.+..+++.+.. .+.++|++|-|+||||++.++.... .++..+.+++- ...---....+++....+..+....+-
T Consensus 23 ~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~--~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 23 VRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA--ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred ccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc--CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 34556666654 4789999999999999999997522 12333333321 111111133333333222111111000
Q ss_pred EeeccCcCCCCCceEEEechHHHHHHHccCC-CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 130 ~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
.. .. . ..+. +..-..++..+..+- ...+.=++|+|+.| +-.+...-.++-..+...++++.+|+.|=+-
T Consensus 101 a~---~l--~-q~~~-~~~l~~l~~~L~~Ela~~~~pl~LVlDDyH-li~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 101 AQ---TL--L-QKHQ-YVSLESLLSSLLNELASYEGPLYLVLDDYH-LISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HH---HH--H-Hhcc-cccHHHHHHHHHHHHHhhcCceEEEecccc-ccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 00 00 0 0011 111222333332211 12334589999999 4444444444333444578889999988653
No 360
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.22 E-value=0.04 Score=52.24 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.|++||||||++-.+.-
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999998876643
No 361
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.19 E-value=0.094 Score=48.62 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999998876543
No 362
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.18 E-value=0.078 Score=52.98 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=63.5
Q ss_pred HHHHHHHHhc----CCEEEEEcCCCChHHHHHHHHHHhcCcc-CCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEee
Q 007931 55 RTAILYLVET----HATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (584)
Q Consensus 55 ~~~il~~l~~----~~~viv~a~TGsGKT~~ip~~l~~~~~~-~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~ 129 (584)
-+++.+.+.. .+++.|+|+.|+|||+++-.+..+.... ....++++.-.+......+.+.+...++......
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--- 81 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI--- 81 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS---
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc---
Confidence 3556666655 5689999999999999888776542211 2233454443333333455555666665432110
Q ss_pred EeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 130 ~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
.... ++-- -...+.+.+.. +--+||+|.+++.. .+..+...+.....+.++|+.|=.
T Consensus 82 ------~~~~---~~~~-~~~~l~~~L~~-----~~~LlVlDdv~~~~----~~~~l~~~~~~~~~~~kilvTTR~ 138 (287)
T PF00931_consen 82 ------SDPK---DIEE-LQDQLRELLKD-----KRCLLVLDDVWDEE----DLEELREPLPSFSSGSKILVTTRD 138 (287)
T ss_dssp ------SCCS---SHHH-HHHHHHHHHCC-----TSEEEEEEEE-SHH----HH-------HCHHSS-EEEEEESC
T ss_pred ------cccc---cccc-ccccchhhhcc-----ccceeeeeeecccc----cccccccccccccccccccccccc
Confidence 0001 0000 11233333333 24689999998422 222222222334457788887744
No 363
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.16 E-value=0.043 Score=55.94 Aligned_cols=30 Identities=33% Similarity=0.347 Sum_probs=23.8
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 58 ILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 58 il~~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++..+.+++|+|+|||||||++-.++.
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~aL~~ 182 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTNAALR 182 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHh
Confidence 334566789999999999999999865543
No 364
>PRK09087 hypothetical protein; Validated
Probab=95.15 E-value=0.14 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l 86 (584)
++.+++.||+|||||+++-.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5669999999999998776443
No 365
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.15 E-value=0.056 Score=63.16 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=88.4
Q ss_pred CEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC--CcEEEEeCCCCccccccCCeE
Q 007931 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--KRKVVISTNIAETSLTLEGIV 355 (584)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g--~~~vlvaT~i~e~Gidip~v~ 355 (584)
++|||.+-.....-+...+... ++....++|+++..+|...++.|.++ ..-.+++|-..+.|+|+-.-+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 7999999998888888888765 47789999999999999999999875 566778888999999999999
Q ss_pred EEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 356 YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 356 ~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
+||.++. ..+ |.-..++..|+-|.|+.++=.+|++.++...+.
T Consensus 784 ~vi~~d~--------~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 784 TVILFDP--------WWN-------PAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred eEEEecc--------ccC-------hHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 9997544 222 333445555666666667778999999887554
No 366
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.15 E-value=0.041 Score=58.59 Aligned_cols=88 Identities=22% Similarity=0.365 Sum_probs=53.8
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCC
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~ 140 (584)
.+..+..++|.|++|+|||+++-+++.... ..+.+++|++-.-.. .++..+ ++.++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~--------------- 136 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSGEESA--SQIKLR-AERLGLPSDN--------------- 136 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccccH--HHHHHH-HHHcCCChhc---------------
Confidence 455678999999999999999988877654 235677888754322 233333 3344432211
Q ss_pred CceEEEec---hHHHHHHHccCCCCCCCcEEEEeCCC
Q 007931 141 LTAIKFLT---DGVLLREMMDDPLLTKYSVIMVDEAH 174 (584)
Q Consensus 141 ~~~I~~~T---~~~ll~~l~~~~~l~~~~~iIiDE~H 174 (584)
+.+.. -+.+.+.+.. .+.++||||+++
T Consensus 137 ---l~~~~e~~l~~i~~~i~~----~~~~lVVIDSIq 166 (446)
T PRK11823 137 ---LYLLAETNLEAILATIEE----EKPDLVVIDSIQ 166 (446)
T ss_pred ---EEEeCCCCHHHHHHHHHh----hCCCEEEEechh
Confidence 11211 2344444322 367899999998
No 367
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.14 E-value=0.11 Score=52.19 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=30.4
Q ss_pred cCCCchHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHH
Q 007931 47 QRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~--~~viv~a~TGsGKT~~ip~~ 85 (584)
--.|...+|.-.++++... +.|.+.|+-|||||.++-..
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHH
Confidence 3468888999999999776 46888999999999554433
No 368
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.12 E-value=0.035 Score=57.12 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=27.6
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~ 105 (584)
.+..++|+|||||||||.+-.++.......+++++.+-.|.+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E 162 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE 162 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh
Confidence 467899999999999998865554322122345555555543
No 369
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.11 E-value=0.17 Score=51.16 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=42.9
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
|.+-....+.+.+...+....+.++||||+| .++.....+++|.+..-.++..+|+.|..+
T Consensus 93 I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 93 IVIEQVREISQKLALTPQYGIAQVVIVDPAD--AINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred ccHHHHHHHHHHHhhCcccCCcEEEEeccHh--hhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 4444444455666666667789999999999 456667788888777666677777776543
No 370
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.11 E-value=0.06 Score=51.76 Aligned_cols=44 Identities=34% Similarity=0.311 Sum_probs=31.8
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccC-----CCeEEEEeCch
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQPR 104 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~-----~~~~I~v~~~r 104 (584)
.+..++++.|.|++|+|||+++-+++....... +.+++++....
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 455688999999999999988887776543222 25677776544
No 371
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.10 E-value=0.15 Score=54.41 Aligned_cols=42 Identities=19% Similarity=0.535 Sum_probs=25.7
Q ss_pred CCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 160 PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 160 ~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
+...+..+|||||+|. +..+....+++.+........+|+.+
T Consensus 117 ~~~~~~kvvIIdead~--lt~~~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 117 PSKSRYKIYIIDEVHM--LTKEAFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred hhcCCCEEEEEecHHh--hCHHHHHHHHHHhhcCCCCceEEEEe
Confidence 3456789999999993 33334455555555544555555543
No 372
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.076 Score=56.00 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
++++-.++++||--| +++...-..++..+...-.+--++..|=-+
T Consensus 489 LL~dapl~lLDEPTe-gLD~~TE~~vL~ll~~~~~~kTll~vTHrL 533 (573)
T COG4987 489 LLHDAPLWLLDEPTE-GLDPITERQVLALLFEHAEGKTLLMVTHRL 533 (573)
T ss_pred HHcCCCeEEecCCcc-cCChhhHHHHHHHHHHHhcCCeEEEEeccc
Confidence 467889999999985 777777777777776655555566655433
No 373
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.06 E-value=0.043 Score=51.54 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=17.5
Q ss_pred CEEEEEcCCCChHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l 86 (584)
.++|++||+|+||||.+-.+.
T Consensus 49 P~liisGpPG~GKTTsi~~LA 69 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLA 69 (333)
T ss_pred CceEeeCCCCCchhhHHHHHH
Confidence 579999999999998775443
No 374
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.05 E-value=0.044 Score=61.81 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=42.3
Q ss_pred cCCCchHHHHHHH----HHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH
Q 007931 47 QRLPVYKYRTAIL----YLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ 109 (584)
Q Consensus 47 ~~lP~~~~~~~il----~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~ 109 (584)
.....+..|.+.+ +++.++..+++.||||+||| +++|.+..... .+.++|+++.++.+..|
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~--~~~~viist~t~~lq~q 78 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE--EGKKVIISTRTKALQEQ 78 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH--cCCcEEEECCCHHHHHH
Confidence 3444556665555 45566778999999999999 67776655432 34678888888876655
No 375
>PRK09354 recA recombinase A; Provisional
Probab=95.04 E-value=0.075 Score=54.14 Aligned_cols=57 Identities=26% Similarity=0.276 Sum_probs=41.0
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~v 123 (584)
.+..+.++.|.||+|||||++.-+++.+.. ..+++++|+...-.+.. +.++.+|.++
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~-~~G~~~~yId~E~s~~~-----~~a~~lGvdl 112 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDP-----VYAKKLGVDI 112 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchHH-----HHHHHcCCCH
Confidence 456688999999999999998888877653 35677888877765543 2345555544
No 376
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.04 E-value=0.31 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+++++.|||||||||++-.+.-.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~ 134 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI 134 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc
Confidence 58999999999999988766543
No 377
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.01 E-value=0.22 Score=60.26 Aligned_cols=53 Identities=8% Similarity=0.149 Sum_probs=36.9
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCC-CeEEEEec-CCCCHHHHhcc
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSS-GLIILPLY-SGLSRAEQEQV 327 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~-~~~v~~lh-~~l~~~~r~~i 327 (584)
...++||+.++.++-..+...++..+...+.-.. ...+-.|- .+++.++++.+
T Consensus 1090 ~R~~TLIIa~tN~~R~aIN~~IR~~L~~~G~Lg~~~~~~~~L~~~~~T~aE~r~a 1144 (1623)
T PRK14712 1090 AREQTLIVTHLNEDRRVLNSMIHDAREKAGELGQVQVMVPVLNTANIRDGELRRL 1144 (1623)
T ss_pred hhcceEEEecccHHHHHHHHHHHHHHHHcCCCCCCceEEEEEecCCCCHHHHhhh
Confidence 4568999999999999999999887765443221 23344343 67888777754
No 378
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=94.99 E-value=0.13 Score=48.97 Aligned_cols=31 Identities=32% Similarity=0.293 Sum_probs=25.5
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGW 91 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~ 91 (584)
.++.++..+|.||+||||||++-.+..+...
T Consensus 53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred eecCCCcEEEECCCCCCHHHHHHHHhcccCC
Confidence 3467888999999999999999877766643
No 379
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.98 E-value=0.08 Score=53.42 Aligned_cols=46 Identities=26% Similarity=0.219 Sum_probs=35.1
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la 107 (584)
.+..+..+.|.||+|||||++.-+++.+.. ..+++++++...-.+.
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~-~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALD 96 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEcccchhH
Confidence 567788999999999999988887777653 3466778886654433
No 380
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.96 E-value=0.044 Score=56.46 Aligned_cols=30 Identities=30% Similarity=0.545 Sum_probs=22.8
Q ss_pred HHHHHh-cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 58 ILYLVE-THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 58 il~~l~-~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+.+.+. .+..++|+|||||||||.+-.++.
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl~ 156 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAIIR 156 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHHH
Confidence 344444 678999999999999988865543
No 381
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.95 E-value=0.055 Score=52.54 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+.++.++.|.||+||||||++-.+..
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999876543
No 382
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.94 E-value=0.13 Score=57.24 Aligned_cols=52 Identities=23% Similarity=0.444 Sum_probs=34.0
Q ss_pred HHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 150 ~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
..+...+...|...++.++||||||. +..+....+++.+..-.....+|+++
T Consensus 104 ReLie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 104 RELIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred HHHHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 34555555566778999999999993 44556667777665544445455444
No 383
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.94 E-value=0.26 Score=49.87 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=42.1
Q ss_pred ceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 142 ~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
..|.+-....+.+.+...+....+.++|||++| .++.....+++|.+..-. +..+|++|..
T Consensus 102 ~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae--~m~~~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 102 PQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAE--TMNEAAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred ccCcHHHHHHHHHHHccCcccCCceEEEEEchh--hcCHHHHHHHHHHHhCCC-CCeEEEEECC
Confidence 345555555677777777888899999999999 345556667777765544 6656665543
No 384
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.93 E-value=0.05 Score=53.19 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=28.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ 109 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~ 109 (584)
....++|.|||||||||.+..++-.-.......+|-+--|.+..-.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~ 169 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHE 169 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhc
Confidence 3567999999999999777655544333233344555555544433
No 385
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.15 Score=48.17 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=36.3
Q ss_pred chHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCC-ceEEEEecccChHHHHHH
Q 007931 148 TDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD-LRLIISSATIEAKSMSAF 214 (584)
Q Consensus 148 T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~-~~vi~~SAT~~~~~~~~~ 214 (584)
+.|..-+......++.+..++++||-= .+++......+.+.+.....+ -..++++.+-+.+.+.++
T Consensus 120 S~Ge~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~ 186 (202)
T cd03233 120 SGGERKRVSIAEALVSRASVLCWDNST-RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDL 186 (202)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHh
Confidence 344433333333346678999999977 567766666665555543322 234445555444444443
No 386
>PRK05973 replicative DNA helicase; Provisional
Probab=94.89 E-value=0.029 Score=54.07 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHH
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV 115 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~ 115 (584)
+++...+..+..++|.|++|+|||++.-+++.+... .+.+++|++-.- ..+++.+++
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeC--CHHHHHHHH
Confidence 345566778899999999999999998888877653 455677775432 233444443
No 387
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.89 E-value=0.21 Score=48.00 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||.||||||++-.+.-
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999998876653
No 388
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.89 E-value=0.056 Score=51.33 Aligned_cols=41 Identities=32% Similarity=0.339 Sum_probs=30.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
+..+..+.|.||+|||||++.-+++.+.. ..+.+++|+.-.
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~-~~g~~v~yi~~e 49 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAA-RQGKKVVYIDTE 49 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEECC
Confidence 34578999999999999988777766543 235567777664
No 389
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.87 E-value=0.082 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.0
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHH
Q 007931 60 YLVETHATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 60 ~~l~~~~~viv~a~TGsGKT~~ip~~ 85 (584)
..++.+.+++..||+|+|||++.-.+
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l 229 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNL 229 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHH
Confidence 45578899999999999999665443
No 390
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.85 E-value=0.087 Score=58.66 Aligned_cols=43 Identities=12% Similarity=0.236 Sum_probs=29.0
Q ss_pred CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
++++-+++|+||+= -.++.+....+.+.+....++.-+|+.|=
T Consensus 500 ll~~~~IliLDE~T-SaLD~~te~~i~~~l~~~~~~~TvIiItH 542 (588)
T PRK11174 500 LLQPCQLLLLDEPT-ASLDAHSEQLVMQALNAASRRQTTLMVTH 542 (588)
T ss_pred HhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 46778999999997 35777666666666665555554555443
No 391
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=0.08 Score=57.83 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=24.8
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 58 il~~l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+--.+..++++-++||.||||||++-.+..-
T Consensus 487 lsfti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 487 LSFTIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4445678999999999999999998765543
No 392
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.81 E-value=0.18 Score=48.50 Aligned_cols=26 Identities=42% Similarity=0.624 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||.||||||++-.+.-
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35788999999999999998876653
No 393
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.77 E-value=0.32 Score=59.65 Aligned_cols=124 Identities=18% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCchHHHHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHh--c-CccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcc
Q 007931 49 LPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKE--A-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (584)
Q Consensus 49 lP~~~~~~~il~~l~~--~~~viv~a~TGsGKT~~ip~~l~~--~-~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~v 123 (584)
..+...|.+.+..+.. +++++|+|..|+||||++-.++.. . ....+..++.++|+-+.+. ++. +.|..
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk-----~L~-e~Gi~- 1038 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG-----EMR-SAGVD- 1038 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH-----HHH-hcCcc-
Confidence 3456667766766655 579999999999999887544322 1 1112345677787764443 222 12221
Q ss_pred eeEEeeEeeccCcCCCCCceEEEechHHHHHHHc-----cCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCce
Q 007931 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMM-----DDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (584)
Q Consensus 124 g~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~-----~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~ 198 (584)
-.|-..++.... .......-++|||||+= .++...+..+++.+.. .+.|
T Consensus 1039 ----------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~~--~gar 1092 (1747)
T PRK13709 1039 ----------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGR 1092 (1747)
T ss_pred ----------------------hhhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhc--CCCE
Confidence 113333332110 01112345899999997 5666666666665432 3578
Q ss_pred EEEEecc
Q 007931 199 LIISSAT 205 (584)
Q Consensus 199 vi~~SAT 205 (584)
+|++.-+
T Consensus 1093 vVLVGD~ 1099 (1747)
T PRK13709 1093 AVSSGDT 1099 (1747)
T ss_pred EEEecch
Confidence 8887755
No 394
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.77 E-value=0.22 Score=57.44 Aligned_cols=118 Identities=21% Similarity=0.299 Sum_probs=57.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEEE
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKF 146 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~ 146 (584)
++++.||||+|||.++-.+.. ..+.... .++.... ....-...+.+..|...| .+||
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~-~l~~~~~-~~~~~dm---se~~~~~~~~~l~g~~~g-yvg~----------------- 654 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAE-LLYGGEQ-NLITINM---SEFQEAHTVSRLKGSPPG-YVGY----------------- 654 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHhCCCc-ceEEEeH---HHhhhhhhhccccCCCCC-cccc-----------------
Confidence 589999999999966653322 2222222 2333321 111111112222222221 2222
Q ss_pred echHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhc-----------CCceEEEEecccChHHHHHH
Q 007931 147 LTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-----------SDLRLIISSATIEAKSMSAF 214 (584)
Q Consensus 147 ~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-----------~~~~vi~~SAT~~~~~~~~~ 214 (584)
...|.|...+.. ..+++|++||++. .+.+....++..+-..+ .+ .+|+||..+..+.+.+.
T Consensus 655 ~~~g~L~~~v~~----~p~svvllDEiek--a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n-~iiI~TSNlg~~~~~~~ 726 (852)
T TIGR03345 655 GEGGVLTEAVRR----KPYSVVLLDEVEK--AHPDVLELFYQVFDKGVMEDGEGREIDFKN-TVILLTSNAGSDLIMAL 726 (852)
T ss_pred cccchHHHHHHh----CCCcEEEEechhh--cCHHHHHHHHHHhhcceeecCCCcEEeccc-cEEEEeCCCchHHHHHh
Confidence 223455555554 3579999999983 33344333333332211 22 46777777765555443
No 395
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.75 E-value=0.091 Score=55.61 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=18.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+++.||+|+|||+++-.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999988766544
No 396
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.71 E-value=0.027 Score=54.80 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=35.3
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeC
Q 007931 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (584)
Q Consensus 57 ~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~ 102 (584)
+++..+..++.++|.|++|+|||+++-+++.......+.++++++-
T Consensus 5 ~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 5 NLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred hhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 3445667889999999999999988888877665443566777764
No 397
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.69 E-value=0.033 Score=53.79 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 007931 68 TIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 68 viv~a~TGsGKT~~ip~~l~~~ 89 (584)
++|.|+.|||||+.+-.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4799999999999888776653
No 398
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=94.68 E-value=0.1 Score=57.72 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=40.2
Q ss_pred CcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEE
Q 007931 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYR 404 (584)
Q Consensus 335 ~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~ 404 (584)
.++.|++-.++-.|-|=|+|=.+.-. ....|..+=.|.+||.-|. ..|.-++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL------------------~~S~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKL------------------RSSGSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEe------------------cCCCcchHHHHHhccceeeeeccccceec
Confidence 48999999999999999998666631 1144666778999999997 6676554
No 399
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.68 E-value=0.1 Score=50.68 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.|++||||||++-.+.-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G 51 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLER 51 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 35789999999999999998876654
No 400
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.66 E-value=0.077 Score=52.36 Aligned_cols=32 Identities=41% Similarity=0.565 Sum_probs=23.0
Q ss_pred HHHHHHh-cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 57 AILYLVE-THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 57 ~il~~l~-~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+..++. .+..++|+|+|||||||.+-.++..
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 3444454 3568999999999999988655443
No 401
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.65 E-value=0.11 Score=51.54 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=32.6
Q ss_pred chHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 148 TDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 148 T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
+.|..-+......++.+-+++|+||.= .+++......+.+.+.....+..+|+.|
T Consensus 140 S~G~~qrl~LaRall~~p~illlDEpt-s~LD~~~~~~l~~~l~~~~~~~tii~is 194 (275)
T cd03289 140 SHGHKQLMCLARSVLSKAKILLLDEPS-AHLDPITYQVIRKTLKQAFADCTVILSE 194 (275)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 444444433333456778999999987 5667666666666555544444444433
No 402
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.59 E-value=0.2 Score=58.82 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=65.3
Q ss_pred HHHHHHHh---cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc-hHHHHHHHHHHHHHHhCCcceeEEeeEe
Q 007931 56 TAILYLVE---THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP-RRLAVQAVASRVAEEMGVKVGEEVGYTI 131 (584)
Q Consensus 56 ~~il~~l~---~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~-r~la~~~~~~~~~~~~~~~vg~~vg~~~ 131 (584)
..+++.+. ..+.++|+||.|.||||.+-+|+... + .+++++-. ..--.......+...++...... +..
T Consensus 20 ~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~-~~~- 92 (903)
T PRK04841 20 ERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGK----N-NLGWYSLDESDNQPERFASYLIAALQQATNGH-CSK- 92 (903)
T ss_pred hHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhC----C-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcc-cch-
Confidence 34444443 45789999999999999999988532 2 45555432 21111122223332221111000 000
Q ss_pred eccCcCCCCCceEEEechHHHHHHHccCC-CCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEeccc
Q 007931 132 RFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (584)
Q Consensus 132 ~~~~~~~~~~~~I~~~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~ 206 (584)
....... .-..+...++..+...- ....--+||||++|. ++.......+..+.+ ..+++++|+.|-+.
T Consensus 93 -~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~--~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 93 -SEALAQK----RQYASLSSLFAQLFIELADWHQPLYLVIDDYHL--ITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred -hhhhhcc----CCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCc--CCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 0000000 00012222222221110 123456899999993 333344445555444 46778888888664
No 403
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.57 E-value=0.11 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999998876543
No 404
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.54 E-value=0.23 Score=47.59 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||.||||||++-.+.-
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHc
Confidence 35788999999999999998876654
No 405
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.53 E-value=0.046 Score=60.01 Aligned_cols=43 Identities=7% Similarity=0.209 Sum_probs=29.6
Q ss_pred CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
++++.+++|+||+= -+++.+....+.+.+....++.-+|+.|=
T Consensus 473 l~~~~~ililDE~t-s~lD~~~~~~i~~~l~~~~~~~t~i~itH 515 (529)
T TIGR02857 473 FLRDAPLLLLDEPT-AHLDAETEALVTEALRALAQGRTVLLVTH 515 (529)
T ss_pred HhcCCCEEEEeCcc-cccCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 56778999999987 46777776767666666555555555543
No 406
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.52 E-value=0.43 Score=49.37 Aligned_cols=140 Identities=18% Similarity=0.169 Sum_probs=61.4
Q ss_pred EEEcCCCChHHHHHHHHHHhcCccCCC-eEEEEeCchHHHHHHHHHH---HHHHhCCcceeEEeeEeeccCcC-CCCCce
Q 007931 69 IIVGETGSGKTTQIPQYLKEAGWADGG-RVIACTQPRRLAVQAVASR---VAEEMGVKVGEEVGYTIRFEDFT-NKDLTA 143 (584)
Q Consensus 69 iv~a~TGsGKT~~ip~~l~~~~~~~~~-~~I~v~~~r~la~~~~~~~---~~~~~~~~vg~~vg~~~~~~~~~-~~~~~~ 143 (584)
++.++.|+|||+.+..++......... +.++++++...+...+.+. +...... .... .+....+... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~nG~~ 78 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEI-KFNEWNDRKIILPNGSR 78 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS---EEEE-SSEEEETTS-E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCc-ccccCCCCcEEecCceE
Confidence 578999999998877666555444443 5666678887777653332 2221111 1111 1110111111 022455
Q ss_pred EEEechHH--HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc-ChHHHHHHhh
Q 007931 144 IKFLTDGV--LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFH 216 (584)
Q Consensus 144 I~~~T~~~--ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~-~~~~~~~~~~ 216 (584)
|.+.+.+. -...+.. ..+++|++||+-. ...+.....+............+..|-|. ....+.+++.
T Consensus 79 i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~ 148 (384)
T PF03237_consen 79 IQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPPNPGGWFYEIFQ 148 (384)
T ss_dssp EEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE---SSSHHHHHHH
T ss_pred EEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCCCCCCceeeeee
Confidence 66666432 1222232 4688999999652 22334444455554444434333555555 3333444443
No 407
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.50 E-value=0.24 Score=45.25 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=47.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEEEe
Q 007931 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFL 147 (584)
Q Consensus 68 viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~ 147 (584)
++|.|++|||||+.+.+++.. .+.+.+|+.-.+.. ...+.+|+.+....+ + ..=.++-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~-d~em~~rI~~H~~~R----------------~-~~w~t~E 59 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAF-DDEMAERIARHRKRR----------------P-AHWRTIE 59 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcC-CHHHHHHHHHHHHhC----------------C-CCceEee
Confidence 689999999999998888765 23456777555433 335566655422111 1 1222334
Q ss_pred chHHHHHHHccCCCCCCCcEEEEeCCC
Q 007931 148 TDGVLLREMMDDPLLTKYSVIMVDEAH 174 (584)
Q Consensus 148 T~~~ll~~l~~~~~l~~~~~iIiDE~H 174 (584)
++..|.+.+...+ ..+.|+||-+.
T Consensus 60 ~~~~l~~~l~~~~---~~~~VLIDclt 83 (169)
T cd00544 60 TPRDLVSALKELD---PGDVVLIDCLT 83 (169)
T ss_pred cHHHHHHHHHhcC---CCCEEEEEcHh
Confidence 5555555543221 35678888765
No 408
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.50 E-value=0.056 Score=60.18 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=35.1
Q ss_pred HHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 150 ~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
|.--|......++++-+++|+||.= -+++.+....+++.+....++..+|+.|-
T Consensus 475 Gq~QRialARall~~~~iliLDEpt-s~LD~~t~~~i~~~l~~~~~~~tvIiitH 528 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEAT-SALDVETEAKVKAALDELMKGRTTFIIAH 528 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 4433333333357788999999998 56787777777777766655554555443
No 409
>PHA00729 NTP-binding motif containing protein
Probab=94.45 E-value=0.13 Score=48.92 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=21.6
Q ss_pred HHHHHhcC--CEEEEEcCCCChHHHHHHHHHH
Q 007931 58 ILYLVETH--ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 58 il~~l~~~--~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+.+.+.++ .+++|.|++|+|||+++-.+..
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 44444443 3799999999999988765544
No 410
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.44 E-value=0.75 Score=50.35 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=76.6
Q ss_pred cCCEEEEEcCCCChHHHHHH-HHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHH----HhCCcceeE-EeeEe--eccC
Q 007931 64 THATTIIVGETGSGKTTQIP-QYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE----EMGVKVGEE-VGYTI--RFED 135 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip-~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~----~~~~~vg~~-vg~~~--~~~~ 135 (584)
+.+..++..|==.|||+.+. .+......-.+-++++.++.+..+ +.+.+++.. .+....... -|-.+ .+.+
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts-~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~n 331 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKAT-EPVFEEIGARLRQWFGASRVDHVKGETISFSFPD 331 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHH-HHHHHHHHHHHhhhcchhheeeecCcEEEEEecC
Confidence 44568888999999996443 333222222345556666555544 444444333 322211111 12111 2211
Q ss_pred cCCCCCceEEEechHHHHHHHccCC-C-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHH
Q 007931 136 FTNKDLTAIKFLTDGVLLREMMDDP-L-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSA 213 (584)
Q Consensus 136 ~~~~~~~~I~~~T~~~ll~~l~~~~-~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~ 213 (584)
..+..|.|.+.. +.. . =.+++++|||||+. +..+.+..++-.+... +.++|.+|.|-..+.-..
T Consensus 332 ---G~kstI~FaSar-------ntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~~--n~k~I~ISS~Ns~~~sTS 397 (738)
T PHA03368 332 ---GSRSTIVFASSH-------NTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQT--NCKIIFVSSTNTGKASTS 397 (738)
T ss_pred ---CCccEEEEEecc-------CCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhcc--CccEEEEecCCCCccchH
Confidence 112467776431 111 1 34789999999994 4556666666433333 889999999986666666
Q ss_pred HhhcC
Q 007931 214 FFHAR 218 (584)
Q Consensus 214 ~~~~~ 218 (584)
|+.+.
T Consensus 398 FL~nL 402 (738)
T PHA03368 398 FLYNL 402 (738)
T ss_pred HHHhh
Confidence 66543
No 411
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.44 E-value=0.083 Score=57.09 Aligned_cols=94 Identities=22% Similarity=0.211 Sum_probs=0.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCC
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~ 141 (584)
+..+..++|.||+|+|||++..+++.+. ..++.+++|++-.-.. +...+-++.+|.......- .
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~-~~~ge~~~y~s~eEs~---~~i~~~~~~lg~~~~~~~~------------~ 323 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENA-CANKERAILFAYEESR---AQLLRNAYSWGIDFEEMEQ------------Q 323 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEeeCCH---HHHHHHHHHcCCChHHHhh------------C
Q ss_pred ceEEEec-------hHHHHHHHccCCCCCCCcEEEEe
Q 007931 142 TAIKFLT-------DGVLLREMMDDPLLTKYSVIMVD 171 (584)
Q Consensus 142 ~~I~~~T-------~~~ll~~l~~~~~l~~~~~iIiD 171 (584)
..+.+.. ++.++..+.....-.+.+.||||
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvID 360 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAID 360 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEc
No 412
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.43 E-value=0.17 Score=51.37 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=40.7
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
|-+-..-.+.+.+...+....++++|||++| .++.....++||.+..-.++..+|+.|..
T Consensus 87 I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~--~m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQGGNKVVYIQGAE--RLTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3333334455555566667889999999999 45566778888887776666666665544
No 413
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.41 E-value=0.22 Score=52.49 Aligned_cols=131 Identities=16% Similarity=0.138 Sum_probs=69.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCcc--CCCeEEEEeCchHHHHHHHHHHHHHH---hCCcceeEEeeEeecc--CcCC
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRRLAVQAVASRVAEE---MGVKVGEEVGYTIRFE--DFTN 138 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~--~~~~~I~v~~~r~la~~~~~~~~~~~---~~~~vg~~vg~~~~~~--~~~~ 138 (584)
+..++.|..|||||+.+...+...... ++..++++-+...-...++...+... +|... -+..... ....
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~----~~~~~~~~~~i~~ 77 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINY----EFKKSKSSMEIKI 77 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChh----heeecCCccEEEe
Confidence 467899999999996666555444333 45566777777766666665555432 23211 1111100 0001
Q ss_pred CC-CceEEEech-HHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccC
Q 007931 139 KD-LTAIKFLTD-GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (584)
Q Consensus 139 ~~-~~~I~~~T~-~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~ 207 (584)
.. ...|+|..- +.-.+ +. -...+..+.+||+.+. ..+.+..++.+++.. .....|.+|.||.
T Consensus 78 ~~~g~~i~f~g~~d~~~~-ik---~~~~~~~~~idEa~~~--~~~~~~~l~~rlr~~-~~~~~i~~t~NP~ 141 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNK-LK---SGAGIAIIWFEEASQL--TFEDIKELIPRLRET-GGKKFIIFSSNPE 141 (396)
T ss_pred cCCCeEEEeecccCChhH-hh---Ccceeeeehhhhhhhc--CHHHHHHHHHHhhcc-CCccEEEEEcCcC
Confidence 11 345555443 21111 11 1234689999999964 344566666554321 2222478888883
No 414
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.40 E-value=0.065 Score=59.56 Aligned_cols=44 Identities=14% Similarity=0.282 Sum_probs=29.8
Q ss_pred CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
++++-+++|+||.= -.++.+....+.+.+.....+..+|+.|--
T Consensus 495 ll~~~~ililDEpt-saLD~~t~~~i~~~l~~~~~~~tvI~VtHr 538 (582)
T PRK11176 495 LLRDSPILILDEAT-SALDTESERAIQAALDELQKNRTSLVIAHR 538 (582)
T ss_pred HHhCCCEEEEECcc-ccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 46677999999987 356666666666666665556556666643
No 415
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.38 E-value=0.067 Score=51.00 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.+.||+||||||++-.+.-
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999999876553
No 416
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.38 E-value=0.089 Score=53.13 Aligned_cols=46 Identities=28% Similarity=0.198 Sum_probs=35.4
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la 107 (584)
.+..+.++.|.||+|||||++.-+++.+.. ..+++++|+...-.+.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~-~~g~~~vyId~E~~~~ 96 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQ-KLGGTVAFIDAEHALD 96 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEECccccHH
Confidence 466788999999999999988888877653 3456788887665444
No 417
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.38 E-value=0.046 Score=53.10 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=33.7
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.+..+..++|.||+|||||++.-+++.+.. ..+.+++|++-.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEee
Confidence 455688999999999999999999888764 356677888754
No 418
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.34 E-value=0.36 Score=55.89 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCccCCCeEE
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVI 98 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I 98 (584)
.+++.||||+|||+++-. +.+.....+...+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~a-La~~l~~~~~~~i 630 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKA-LANFMFDSDDAMV 630 (857)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhhcCCCcEE
Confidence 689999999999977744 3333333333333
No 419
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.34 E-value=0.39 Score=49.11 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=34.3
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
+...+...+...+..++||||+|. .+.+....++|.+..-.++..+|+.+.
T Consensus 98 l~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 98 LKEEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred HHHHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 444444556677889999999993 445566677777766556666666443
No 420
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.32 E-value=0.11 Score=58.52 Aligned_cols=79 Identities=13% Similarity=0.210 Sum_probs=67.4
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCC-CCccccccCC
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-IAETSLTLEG 353 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~-i~e~Gidip~ 353 (584)
.+.+++|.+||+.-+.+.++.+++.+.. .++.+..+||+++..+|.++++...+|...|+|+|. .+...+.+++
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-----~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-----LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-----cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcc
Confidence 4567999999999999999998887632 258899999999999999999999999999999996 4556678888
Q ss_pred eEEEE
Q 007931 354 IVYVV 358 (584)
Q Consensus 354 v~~VI 358 (584)
+.+||
T Consensus 384 l~lvV 388 (681)
T PRK10917 384 LGLVI 388 (681)
T ss_pred cceEE
Confidence 88876
No 421
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.31 E-value=0.079 Score=49.86 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999988876543
No 422
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.31 E-value=0.21 Score=56.07 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=54.6
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHH---HHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcc
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQ---YLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~---~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~v 123 (584)
.+-|+...|.+++.. ..+.++|.|..|||||+.+-. +++.........+++++.+++ ++..+.+|+....|
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~-AA~em~eRL~~~lg--- 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQ-AAEEMDERIRERLG--- 266 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHH-HHHHHHHHHHHhcC---
Confidence 457888888776643 345679999999999965532 233333233445666666654 45677777776553
Q ss_pred eeEEeeEeeccCcCCCCCceEEEechHHHHHHH
Q 007931 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM 156 (584)
Q Consensus 124 g~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l 156 (584)
...|.+.|-..+-..+
T Consensus 267 -----------------~~~v~v~TFHSlal~I 282 (684)
T PRK11054 267 -----------------TEDITARTFHALALHI 282 (684)
T ss_pred -----------------CCCcEEEeHHHHHHHH
Confidence 1346777876665444
No 423
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.29 E-value=0.44 Score=45.69 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.|+.||||||++-.+.-
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G 28 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILG 28 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999988876553
No 424
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.076 Score=51.40 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=27.9
Q ss_pred CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
+..+.+++|+||-= .+++.+....+.+.+.....+..+|+.|
T Consensus 153 l~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~s 194 (234)
T cd03251 153 LLKDPPILILDEAT-SALDTESERLVQAALERLMKNRTTFVIA 194 (234)
T ss_pred HhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 46677999999987 5777776666666665544444444433
No 425
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=94.28 E-value=0.089 Score=48.52 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=34.6
Q ss_pred CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHH
Q 007931 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSA 213 (584)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~ 213 (584)
..+.+++|+||.- -+++.-....+...+.+.+..-+.|++|.-. +++.+++
T Consensus 149 vh~P~i~vlDEP~-sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCD 201 (245)
T COG4555 149 VHDPSILVLDEPT-SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCD 201 (245)
T ss_pred hcCCCeEEEcCCC-CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhh
Confidence 5677999999998 4677767777777777766655677766443 4444433
No 426
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.28 E-value=0.055 Score=53.06 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~ 51 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVL 51 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999887654
No 427
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.14 Score=47.82 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=21.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||.||||||++-.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999999887665
No 428
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.28 E-value=0.09 Score=53.25 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=22.5
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 60 YLVETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 60 ~~l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
..+..+.+++++|||||||||++-.++
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHH
Confidence 445678899999999999999886554
No 429
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.23 E-value=0.11 Score=58.54 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=62.0
Q ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeE
Q 007931 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIV 355 (584)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~ 355 (584)
++++||.+|+++-+.++.+.+++.+ +..+..+||+++..+|.+.+....+|..+|+|+|.-+-. +.+.++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCC
Confidence 5679999999999999999998764 567999999999999999888888899999999974432 5566777
Q ss_pred EEE
Q 007931 356 YVV 358 (584)
Q Consensus 356 ~VI 358 (584)
.||
T Consensus 261 liV 263 (679)
T PRK05580 261 LII 263 (679)
T ss_pred EEE
Confidence 765
No 430
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.68 Score=46.63 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=28.7
Q ss_pred cCCCCCCccchhhHHHHhcCCCchHHHHHHHHHH--hcCCEEEEEcCCCChHHHHH
Q 007931 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLV--ETHATTIIVGETGSGKTTQI 82 (584)
Q Consensus 29 ~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l--~~~~~viv~a~TGsGKT~~i 82 (584)
|.+.+=-....+++.+ --.||+.. .++.+.+ ..-+-|++.||+|+|||.++
T Consensus 150 Y~dIGGL~~Qi~EirE-~VELPL~~--PElF~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 150 YEDIGGLDEQIQEIRE-VVELPLKN--PELFEELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred hhhccCHHHHHHHHHH-HhcccccC--HHHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence 5554433333333322 24566643 3344443 44567999999999999433
No 431
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.17 E-value=0.099 Score=54.04 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=20.0
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+..++|+|||||||||.+-.++.
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~~ 171 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIYQ 171 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999988865443
No 432
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.16 E-value=0.072 Score=59.05 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.2
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+..++.+.|+||+||||||++-.+.-.
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468899999999999999988766543
No 433
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.16 E-value=0.032 Score=52.05 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=21.4
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~ 85 (584)
.+..+.+++|+||.||||||++--+
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999999988644
No 434
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.15 E-value=0.37 Score=45.50 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 35788999999999999998876653
No 435
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.14 E-value=0.1 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.|++||||||++-.+.-
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 45789999999999999998876653
No 436
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.13 E-value=0.38 Score=46.42 Aligned_cols=54 Identities=11% Similarity=0.133 Sum_probs=34.5
Q ss_pred CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhh
Q 007931 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFH 216 (584)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~ 216 (584)
.-+..++|+||.= -+++..-...+++.+......-..-++.+|-+.+.+..|-.
T Consensus 154 a~~P~iliLDEPt-a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad 207 (235)
T COG1122 154 AMGPEILLLDEPT-AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYAD 207 (235)
T ss_pred HcCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCC
Confidence 3457899999987 45666666666666666554433334456777776666544
No 437
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.13 E-value=0.32 Score=49.35 Aligned_cols=50 Identities=16% Similarity=0.293 Sum_probs=32.2
Q ss_pred HHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
+...+...|...+..++||||+|. .+.....++++.+..-.++..+|+.+
T Consensus 81 ~~~~~~~~p~~~~~kv~iI~~ad~--m~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 81 IIEEVNKKPYEGDKKVIIIYNSEK--MTEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred HHHHHhcCcccCCceEEEEechhh--cCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 334444566778899999999993 34445666777666544455555544
No 438
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.12 E-value=0.059 Score=52.16 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+..++.+.|.|+.||||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999988766543
No 439
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.12 E-value=0.24 Score=48.02 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=28.1
Q ss_pred CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
++.+.+++++||-= .+++......+.+.+.....+..+|+.|
T Consensus 153 l~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~tiii~s 194 (237)
T cd03252 153 LIHNPRILIFDEAT-SALDYESEHAIMRNMHDICAGRTVIIIA 194 (237)
T ss_pred HhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 45677999999988 5777777666666666554444444443
No 440
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.11 E-value=0.18 Score=49.25 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G 47 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAG 47 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45688999999999999999876543
No 441
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=94.08 E-value=0.25 Score=56.35 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=71.5
Q ss_pred hHHHHHHHHHH----hcCCEEEEEcCCCChHHHHHHHHHHhcC--ccCCCeEEEEeCchHHHHHHHHHHHHHHh-CCcce
Q 007931 52 YKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRRLAVQAVASRVAEEM-GVKVG 124 (584)
Q Consensus 52 ~~~~~~il~~l----~~~~~viv~a~TGsGKT~~ip~~l~~~~--~~~~~~~I~v~~~r~la~~~~~~~~~~~~-~~~vg 124 (584)
..||..=++++ ++|=+-|+.-+-|-|||.|.-.++...+ ...-|+-++|+|+..+..-++. +.++. |.++-
T Consensus 617 ReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEME--lKRwcPglKIL 694 (1958)
T KOG0391|consen 617 REYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEME--LKRWCPGLKIL 694 (1958)
T ss_pred HHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHH--HhhhCCcceEe
Confidence 45666556665 4567889999999999955443332221 1123566889998776654321 22222 45555
Q ss_pred eEEeeEe-----eccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCC
Q 007931 125 EEVGYTI-----RFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAH 174 (584)
Q Consensus 125 ~~vg~~~-----~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~H 174 (584)
.+.|... |..+ ..++..+|.|+++..+++-+.. ..-.++.++|+||+|
T Consensus 695 TYyGs~kErkeKRqgW-~kPnaFHVCItSYklv~qd~~A-FkrkrWqyLvLDEaq 747 (1958)
T KOG0391|consen 695 TYYGSHKERKEKRQGW-AKPNAFHVCITSYKLVFQDLTA-FKRKRWQYLVLDEAQ 747 (1958)
T ss_pred eecCCHHHHHHHhhcc-cCCCeeEEeehhhHHHHhHHHH-HHhhccceeehhhhh
Confidence 5566321 1222 2233678888888777654321 124678999999999
No 442
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.08 E-value=0.057 Score=51.36 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=22.7
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..+..+.|.||+||||||++-.+-.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 346889999999999999999876643
No 443
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.08 E-value=0.1 Score=57.78 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|+||+||||||++-.+.-
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g 363 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46889999999999999998866543
No 444
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.04 E-value=0.13 Score=53.26 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=32.3
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.+..+..++|.|++|+|||+++-+++..... .+++++|++-.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~E 119 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGE 119 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECC
Confidence 4566789999999999999999888766532 34567787654
No 445
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.03 E-value=0.41 Score=45.50 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=21.9
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
.+..++.+.|.||+||||||++-.+.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 34678999999999999999887654
No 446
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.02 E-value=0.045 Score=52.68 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=31.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
+..+..++|.|++|||||++.-+++.+.....+.++++++-.
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 456789999999999999999999887654315567787743
No 447
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.025 Score=55.68 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=18.3
Q ss_pred hcCCEEEEEcCCCChHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~ 85 (584)
.-|+.+++.||+|+|||++--.+
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaL 197 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKAL 197 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHH
Confidence 45688999999999999665433
No 448
>PRK06904 replicative DNA helicase; Validated
Probab=94.00 E-value=0.21 Score=53.54 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=45.5
Q ss_pred CCc-hHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHH
Q 007931 49 LPV-YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 116 (584)
Q Consensus 49 lP~-~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~ 116 (584)
+|. +..-+++...+..++.+||.|.||.|||+.+-.++...+...+.++++++ -+....++..|+.
T Consensus 204 i~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fS--lEMs~~ql~~Rll 270 (472)
T PRK06904 204 VTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFS--LEMPAEQIMMRML 270 (472)
T ss_pred ccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe--ccCCHHHHHHHHH
Confidence 454 44456677788899999999999999998776666554433345565554 3466667776643
No 449
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.99 E-value=0.14 Score=49.08 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||.||||||++-.+.-
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999998876653
No 450
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.98 E-value=0.27 Score=55.75 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=26.7
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE
Q 007931 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (584)
Q Consensus 57 ~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v 100 (584)
.+-.+...+..++|.|+||+|||+++- .+.......+++.+.+
T Consensus 391 ~~~~~a~~~~pVLI~GE~GTGK~~lA~-~ih~~s~r~~~~~v~i 433 (686)
T PRK15429 391 QVEMVAQSDSTVLILGETGTGKELIAR-AIHNLSGRNNRRMVKM 433 (686)
T ss_pred HHHHHhCCCCCEEEECCCCcCHHHHHH-HHHHhcCCCCCCeEEE
Confidence 333444556689999999999996554 4444333334455443
No 451
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.96 E-value=0.47 Score=46.11 Aligned_cols=52 Identities=6% Similarity=0.156 Sum_probs=31.5
Q ss_pred CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHh
Q 007931 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (584)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~ 215 (584)
++.+.+++++||-- .+++......+.+.+.....+..+|+.|- +.+.+.++.
T Consensus 158 l~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~tii~~sH--~~~~~~~~~ 209 (242)
T TIGR03411 158 LMQDPKLLLLDEPV-AGMTDEETEKTAELLKSLAGKHSVVVVEH--DMEFVRSIA 209 (242)
T ss_pred HhcCCCEEEecCCc-cCCCHHHHHHHHHHHHHHhcCCEEEEEEC--CHHHHHHhC
Confidence 46678999999998 57777766666665555433433444333 444444443
No 452
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.96 E-value=0.14 Score=51.40 Aligned_cols=42 Identities=31% Similarity=0.334 Sum_probs=28.7
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 58 il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
+..++....+++|+|.|||||||++-.+...-. ...++|.+=
T Consensus 166 L~~av~~r~NILisGGTGSGKTTlLNal~~~i~--~~eRvItiE 207 (355)
T COG4962 166 LRRAVGIRCNILISGGTGSGKTTLLNALSGFID--SDERVITIE 207 (355)
T ss_pred HHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCC--CcccEEEEe
Confidence 344555566999999999999999876665443 233555443
No 453
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.94 E-value=0.098 Score=49.48 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999998876554
No 454
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.92 E-value=0.1 Score=58.09 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
++.++.+.|+|++||||||++-.+.-.
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl 390 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGY 390 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 467899999999999999988766543
No 455
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.90 E-value=0.51 Score=51.80 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEE
Q 007931 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIA 99 (584)
Q Consensus 54 ~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~ 99 (584)
..+.+-.....+..++|.|++||||++++- ++.......+++.+.
T Consensus 208 ~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~-~ih~~s~r~~~pfv~ 252 (534)
T TIGR01817 208 VVDQARVVARSNSTVLLRGESGTGKELIAK-AIHYLSPRAKRPFVK 252 (534)
T ss_pred HHHHHHHHhCcCCCEEEECCCCccHHHHHH-HHHHhCCCCCCCeEE
Confidence 344444445567789999999999996654 444443333444443
No 456
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.89 E-value=0.46 Score=45.38 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=32.9
Q ss_pred CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHh
Q 007931 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (584)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~ 215 (584)
++.+.+++|+||.= .+++......+++.+.....+ +.|+++ |-+.+.+.++.
T Consensus 148 l~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~-~tii~~-sH~~~~~~~~~ 199 (220)
T cd03263 148 LIGGPSVLLLDEPT-SGLDPASRRAIWDLILEVRKG-RSIILT-THSMDEAEALC 199 (220)
T ss_pred HhcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHhcC-CEEEEE-cCCHHHHHHhc
Confidence 46788999999988 567777666666666554444 344433 44555444443
No 457
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.88 E-value=0.26 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=17.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+.+++.||+|+|||+++-.+..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999977765543
No 458
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.85 E-value=0.13 Score=50.09 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=21.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999998876553
No 459
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=93.84 E-value=0.39 Score=50.74 Aligned_cols=108 Identities=22% Similarity=0.343 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeecc
Q 007931 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE 134 (584)
Q Consensus 55 ~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~ 134 (584)
++.|-.....+-.|+|.|+|||||- ++..++.......+++.|.+-.. ++. .++.+ ++.+|-.-|..+|-..+..
T Consensus 154 ~~~i~kvA~s~a~VLI~GESGtGKE-lvAr~IH~~S~R~~~PFVavNca-Aip-~~l~E--SELFGhekGAFTGA~~~r~ 228 (464)
T COG2204 154 RRLIAKVAPSDASVLITGESGTGKE-LVARAIHQASPRAKGPFIAVNCA-AIP-ENLLE--SELFGHEKGAFTGAITRRI 228 (464)
T ss_pred HHHHHHHhCCCCCEEEECCCCCcHH-HHHHHHHhhCcccCCCceeeecc-cCC-HHHHH--HHhhcccccCcCCcccccC
Confidence 4445555566778999999999999 66677777665555665543211 111 12222 3455666665555322211
Q ss_pred CcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH
Q 007931 135 DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (584)
Q Consensus 135 ~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (584)
..+- ..+=+.+.+||+.+ +..+....+++-+..
T Consensus 229 -------G~fE----------------~A~GGTLfLDEI~~--mpl~~Q~kLLRvLqe 261 (464)
T COG2204 229 -------GRFE----------------QANGGTLFLDEIGE--MPLELQVKLLRVLQE 261 (464)
T ss_pred -------ccee----------------EcCCceEEeecccc--CCHHHHHHHHHHHHc
Confidence 1111 23447899999994 555666777776654
No 460
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.84 E-value=0.1 Score=49.65 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAG 46 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999998876654
No 461
>PLN03232 ABC transporter C family member; Provisional
Probab=93.84 E-value=0.18 Score=62.22 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=22.5
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..++.+-|+|+|||||||++-.++.
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~r 1284 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFR 1284 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999998876654
No 462
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.84 E-value=0.086 Score=57.14 Aligned_cols=75 Identities=25% Similarity=0.255 Sum_probs=61.9
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCe
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v 354 (584)
.++++||.+|+..-+.++++.|++.+ +..+..+||+++..+|.+++....+|..+|+|+|..+-. ..++++
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l 94 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNL 94 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCC
Confidence 35679999999999999999998765 456889999999999999988888999999999975432 456677
Q ss_pred EEEE
Q 007931 355 VYVV 358 (584)
Q Consensus 355 ~~VI 358 (584)
..||
T Consensus 95 ~lII 98 (505)
T TIGR00595 95 GLII 98 (505)
T ss_pred CEEE
Confidence 7765
No 463
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.81 E-value=0.15 Score=57.64 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=60.9
Q ss_pred HHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCC
Q 007931 267 VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI 344 (584)
Q Consensus 267 i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i 344 (584)
+..+.....++++++.+||..-+.++++.|.+.....+ .....+. +||.|+..+++++++.+.+|..+|+|+|+.
T Consensus 116 ~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 116 LMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 33344445567899999999999999999988765443 3455555 999999999999999999999999999984
No 464
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.09 Score=49.53 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=33.3
Q ss_pred CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcC-CceEEEEecccChHHHHHHhh
Q 007931 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSATIEAKSMSAFFH 216 (584)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~-~~~vi~~SAT~~~~~~~~~~~ 216 (584)
+-+.++.|+||-+ -+++.|.+..+-+-+...+. +.-+++.| ....+.+|..
T Consensus 160 ~lePkl~ILDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liIT---Hy~rll~~i~ 211 (251)
T COG0396 160 LLEPKLAILDEPD-SGLDIDALKIVAEGINALREEGRGVLIIT---HYQRLLDYIK 211 (251)
T ss_pred hcCCCEEEecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEe---cHHHHHhhcC
Confidence 4467999999999 58999988887777666443 33333333 2344555554
No 465
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=93.78 E-value=0.27 Score=54.69 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=28.3
Q ss_pred CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
++.+.+++|+||.= -+++.+....+.+.+.....+.-+|+.|
T Consensus 486 ll~~p~ililDEpt-s~LD~~~~~~i~~~l~~~~~~~tvI~is 527 (585)
T TIGR01192 486 ILKNAPILVLDEAT-SALDVETEARVKNAIDALRKNRTTFIIA 527 (585)
T ss_pred HhcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 46788999999998 4677777666666665554444444433
No 466
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=93.77 E-value=0.29 Score=50.70 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=34.3
Q ss_pred CcEEEEeCCCcCccchhHHHHHHHHHHH---hcCCceEEEEeccc-ChHHHHHHhhc
Q 007931 165 YSVIMVDEAHERSISTDILLGLLKKIQR---CRSDLRLIISSATI-EAKSMSAFFHA 217 (584)
Q Consensus 165 ~~~iIiDE~Her~~~~d~l~~~l~~~~~---~~~~~~vi~~SAT~-~~~~~~~~~~~ 217 (584)
.-+||||-+..+.-..+++...+..... ...-..||++|... ....+.+.+.+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn 205 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPN 205 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCC
Confidence 4689999988666555666555554322 34556899999887 44445555543
No 467
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.76 E-value=0.42 Score=49.69 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.8
Q ss_pred CCEEEEEcCCCChHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~ 85 (584)
.+.+++.||+|+|||.++-.+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Ai 133 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAI 133 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 467999999999999665433
No 468
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.75 E-value=0.12 Score=57.73 Aligned_cols=76 Identities=24% Similarity=0.242 Sum_probs=63.0
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCe
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v 354 (584)
.++++||.+|....+.++.+.|++.+. ...+..+||++++.+|.+.+....+|+.+|+|.|-.+-. ..+++.
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~-------~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~L 258 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLG-------AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDL 258 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcC-------CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCC
Confidence 466799999999999999999988751 256999999999999999999999999999999975432 345566
Q ss_pred EEEE
Q 007931 355 VYVV 358 (584)
Q Consensus 355 ~~VI 358 (584)
..||
T Consensus 259 gLII 262 (665)
T PRK14873 259 GLVA 262 (665)
T ss_pred CEEE
Confidence 6655
No 469
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.74 E-value=0.38 Score=55.20 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHh--------cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 51 VYKYRTAILYLVE--------THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 51 ~~~~~~~il~~l~--------~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
....++.|.+.+. .+.++++.||+|+|||+++-.+...
T Consensus 325 ~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 325 LKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3455566665432 3467999999999999777655443
No 470
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.72 E-value=0.11 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||.||||||++-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHc
Confidence 4578899999999999999887654
No 471
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.72 E-value=0.22 Score=57.79 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHh-----cCCEEEEEcCCCChHHHHHHHHHHhcCccC-----CCeEEEEeCchHHHHHHHHHHHHHHh
Q 007931 50 PVYKYRTAILYLVE-----THATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQPRRLAVQAVASRVAEEM 119 (584)
Q Consensus 50 P~~~~~~~il~~l~-----~~~~viv~a~TGsGKT~~ip~~l~~~~~~~-----~~~~I~v~~~r~la~~~~~~~~~~~~ 119 (584)
|+....+++-..+. ..++.++.||+|+|||+++-.+........ .+..++......+.+
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a----------- 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA----------- 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh-----------
Q ss_pred CCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccc---hhHHHHHHHHHHHhcCC
Q 007931 120 GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS---TDILLGLLKKIQRCRSD 196 (584)
Q Consensus 120 ~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~---~d~l~~~l~~~~~~~~~ 196 (584)
.+...--....+.+.+..-.....-.+++|||+| .... .+-.......+...-..
T Consensus 243 ---------------------~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih-~l~~~g~~~~~~d~~~~Lk~~l~~ 300 (852)
T TIGR03346 243 ---------------------GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELH-TLVGAGKAEGAMDAGNMLKPALAR 300 (852)
T ss_pred ---------------------cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHH-HhhcCCCCcchhHHHHHhchhhhc
Q ss_pred ceEEEEecccChHHHHHHhhcCC
Q 007931 197 LRLIISSATIEAKSMSAFFHARK 219 (584)
Q Consensus 197 ~~vi~~SAT~~~~~~~~~~~~~~ 219 (584)
-.+.+.-|| +.+.+..|+...+
T Consensus 301 g~i~~IgaT-t~~e~r~~~~~d~ 322 (852)
T TIGR03346 301 GELHCIGAT-TLDEYRKYIEKDA 322 (852)
T ss_pred CceEEEEeC-cHHHHHHHhhcCH
No 472
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=93.67 E-value=0.55 Score=51.73 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|+||+||||||++-.+.-
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999998876653
No 473
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=93.66 E-value=0.37 Score=50.53 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=61.4
Q ss_pred HHHH-hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEe-eEeeccCc
Q 007931 59 LYLV-ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG-YTIRFEDF 136 (584)
Q Consensus 59 l~~l-~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg-~~~~~~~~ 136 (584)
++.+ .++-.|+|.|+||+||- ++...+.+......++.|.+= -+-.-.++.+ ++-+|-.-|..+| +..+.
T Consensus 239 i~~VA~Sd~tVLi~GETGtGKE-lvAraIH~~S~R~~kPfV~~N--CAAlPesLlE--SELFGHeKGAFTGA~~~r~--- 310 (550)
T COG3604 239 IEVVAKSDSTVLIRGETGTGKE-LVARAIHQLSPRRDKPFVKLN--CAALPESLLE--SELFGHEKGAFTGAINTRR--- 310 (550)
T ss_pred HHHHhcCCCeEEEecCCCccHH-HHHHHHHhhCcccCCCceeee--ccccchHHHH--HHHhcccccccccchhccC---
Confidence 3444 45568999999999999 666677666555555544331 1111224444 5667777776666 21111
Q ss_pred CCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH
Q 007931 137 TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (584)
Q Consensus 137 ~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (584)
....+.+=+.+.+||+-|- ...+...+|+-++.
T Consensus 311 ---------------------GrFElAdGGTLFLDEIGel--PL~lQaKLLRvLQe 343 (550)
T COG3604 311 ---------------------GRFELADGGTLFLDEIGEL--PLALQAKLLRVLQE 343 (550)
T ss_pred ---------------------cceeecCCCeEechhhccC--CHHHHHHHHHHHhh
Confidence 1112556688999999964 44466666666554
No 474
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.66 E-value=0.31 Score=47.15 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||.||||||++-.+.-
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999988876653
No 475
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.64 E-value=0.1 Score=49.46 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=21.7
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999998876643
No 476
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.64 E-value=0.061 Score=45.95 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+++|+|++||||||++-.+.-.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999888766544
No 477
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.63 E-value=0.1 Score=52.70 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=36.3
Q ss_pred chHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHH
Q 007931 148 TDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (584)
Q Consensus 148 T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~ 214 (584)
+.|.--+......++.+..++|+||-- .+++......+.+.+.....+..+|+. |-+.+.+.++
T Consensus 135 S~G~~qrv~la~al~~~p~lliLDEPt-~gLD~~~~~~l~~~l~~~~~~~tiii~--sH~l~~~~~~ 198 (301)
T TIGR03522 135 SKGYRQRVGLAQALIHDPKVLILDEPT-TGLDPNQLVEIRNVIKNIGKDKTIILS--THIMQEVEAI 198 (301)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEE--cCCHHHHHHh
Confidence 344433333333357788999999998 577776666655555554444334443 3344444443
No 478
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.62 E-value=0.077 Score=52.27 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=32.3
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.+..+..++|.|++|+|||++.-+++..... .+.+++|++-.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEec
Confidence 4456789999999999999998888876543 35567777643
No 479
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.62 E-value=0.3 Score=47.01 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=33.1
Q ss_pred CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHh
Q 007931 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (584)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~ 215 (584)
++.+.+++|+||-- .+++......+.+.+.....+ +.|+++ |-+.+.+.++.
T Consensus 156 l~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~-~tii~~-sH~~~~~~~~~ 207 (227)
T cd03260 156 LANEPEVLLLDEPT-SALDPISTAKIEELIAELKKE-YTIVIV-THNMQQAARVA 207 (227)
T ss_pred HhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhhC-cEEEEE-eccHHHHHHhC
Confidence 45677999999998 577777666666666655444 444433 44555444444
No 480
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.62 E-value=0.089 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999887654
No 481
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=93.61 E-value=0.37 Score=49.91 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=54.0
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCc
Q 007931 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDF 136 (584)
Q Consensus 57 ~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~ 136 (584)
+|......+..++|.|+||+||+..+-.+.........++.|.+ .-+.-+.+... ++.+|..-|..+|-. ..
T Consensus 93 qik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~--NCa~~~en~~~--~eLFG~~kGaftGa~---~~- 164 (403)
T COG1221 93 QIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAF--NCAAYSENLQE--AELFGHEKGAFTGAQ---GG- 164 (403)
T ss_pred HHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEE--EHHHhCcCHHH--HHHhccccceeeccc---CC-
Confidence 33333345778999999999999555444322221123443332 22222222222 336676666666611 00
Q ss_pred CCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH
Q 007931 137 TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (584)
Q Consensus 137 ~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (584)
-+|.+- ..+=+.+.+||+|+ +.......+++.+..
T Consensus 165 -----------k~Glfe--------~A~GGtLfLDEI~~--LP~~~Q~kLl~~le~ 199 (403)
T COG1221 165 -----------KAGLFE--------QANGGTLFLDEIHR--LPPEGQEKLLRVLEE 199 (403)
T ss_pred -----------cCchhe--------ecCCCEEehhhhhh--CCHhHHHHHHHHHHc
Confidence 111111 22347899999994 333444455554443
No 482
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.59 E-value=0.081 Score=52.18 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=33.9
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.+..+.+++|.|++|||||+..-+++.+.... +.++++++-.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~ 60 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTE 60 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEec
Confidence 36678999999999999999999999877543 5677777643
No 483
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.59 E-value=0.085 Score=51.92 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45788999999999999998876553
No 484
>PRK13695 putative NTPase; Provisional
Probab=93.58 E-value=1.2 Score=40.69 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=17.2
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
.++++|++|+||||++-.+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999998876543
No 485
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=93.57 E-value=0.38 Score=54.24 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 475 i~~Ge~~~IvG~nGsGKSTLl~lL~G 500 (659)
T TIGR00954 475 VPSGNHLLICGPNGCGKSSLFRILGE 500 (659)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999998865543
No 486
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.57 E-value=0.18 Score=48.42 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999998876543
No 487
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=93.55 E-value=0.21 Score=45.23 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=27.1
Q ss_pred CCCcEEEEeCCCcCccchhHHHHHHHHHHHhcC-CceEEEEecccChHH
Q 007931 163 TKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSATIEAKS 210 (584)
Q Consensus 163 ~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~-~~~vi~~SAT~~~~~ 210 (584)
.+-+++++||.- ++.+......+...+.+... +..+|+ +|-+.+.
T Consensus 98 ~~~~llllDEp~-~gld~~~~~~l~~~l~~~~~~~~~vii--~TH~~~~ 143 (162)
T cd03227 98 KPRPLYILDEID-RGLDPRDGQALAEAILEHLVKGAQVIV--ITHLPEL 143 (162)
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEE--EcCCHHH
Confidence 367999999998 67777655555555444322 344443 4655543
No 488
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=93.53 E-value=0.14 Score=56.90 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=34.6
Q ss_pred chHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 148 TDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 148 T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
+.|.--+.....-++++-+++++||.= -+++.+....+.+.+....++.-+|+.|=-
T Consensus 471 SgGqrQRiaLARall~~~~illLDEpt-s~LD~~~~~~i~~~L~~~~~~~tiIiitH~ 527 (571)
T TIGR02203 471 SGGQRQRLAIARALLKDAPILILDEAT-SALDNESERLVQAALERLMQGRTTLVIAHR 527 (571)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 334433333333346778999999987 356776666666666666555555555433
No 489
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.52 E-value=0.62 Score=44.37 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l 86 (584)
++.++|+||.|+||||++-.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3779999999999998876654
No 490
>PLN03130 ABC transporter C family member; Provisional
Probab=93.51 E-value=0.19 Score=62.26 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=22.6
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..++.+-|+|+|||||||++-.++.
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~r 1287 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFR 1287 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356789999999999999998876654
No 491
>PRK08760 replicative DNA helicase; Provisional
Probab=93.50 E-value=0.24 Score=53.20 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHH
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 116 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~ 116 (584)
+++...+..++.++|.|.||.|||+++-.++...+...+.++++++. +....++..|+.
T Consensus 220 D~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSl--EMs~~ql~~Rl~ 278 (476)
T PRK08760 220 DAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSM--EMSASQLAMRLI 278 (476)
T ss_pred HHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEec--cCCHHHHHHHHH
Confidence 45566678889999999999999988877776554333445555533 344455555543
No 492
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.48 E-value=0.11 Score=51.33 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 51 ~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+....+.++..+..+..+++.||+|+|||+++-.+..
T Consensus 7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3455677888889999999999999999987765543
No 493
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.47 E-value=0.075 Score=51.81 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=22.0
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..++.++|.||.|+||||++-.+..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n 38 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIAN 38 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 456789999999999999988765443
No 494
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.47 E-value=0.46 Score=54.24 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=25.8
Q ss_pred CchHHHHHHHHHHh-----cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 50 PVYKYRTAILYLVE-----THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 50 P~~~~~~~il~~l~-----~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
|+....+++-..+. ...++++.||+|+|||+++-.+..
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 66655554444332 346899999999999977755443
No 495
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=93.47 E-value=0.27 Score=51.30 Aligned_cols=29 Identities=28% Similarity=0.411 Sum_probs=23.2
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+..++.+.++||.|+||||++-.+..-.
T Consensus 560 ~v~pGktvAlVG~SGaGKSTimRlLfRff 588 (790)
T KOG0056|consen 560 TVQPGKTVALVGPSGAGKSTIMRLLFRFF 588 (790)
T ss_pred EecCCcEEEEECCCCCchhHHHHHHHHHh
Confidence 34578999999999999999887665433
No 496
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.52 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcC
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEAG 90 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~~ 90 (584)
.+++.||.|||||+++.++.....
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~ 563 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSD 563 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcC
Confidence 589999999999999988876653
No 497
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.44 E-value=0.46 Score=43.75 Aligned_cols=89 Identities=21% Similarity=0.225 Sum_probs=51.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
+...+++||-.||||+-+-+.+..... .+.++++.+|-.. .| .+. ..+.... .....-+
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~iD-------~R----~~~---~~V~Sr~------G~~~~A~ 62 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAID-------TR----YGV---GKVSSRI------GLSSEAV 62 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEecccc-------cc----ccc---ceeeecc------CCcccce
Confidence 456789999999999877666665533 3445566655321 00 010 0111000 0112345
Q ss_pred EEechHHHHHHHccCCCCCCCcEEEEeCCC
Q 007931 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAH 174 (584)
Q Consensus 145 ~~~T~~~ll~~l~~~~~l~~~~~iIiDE~H 174 (584)
.+-.+..+...+........+++|.||||+
T Consensus 63 ~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQ 92 (201)
T COG1435 63 VIPSDTDIFDEIAALHEKPPVDCVLIDEAQ 92 (201)
T ss_pred ecCChHHHHHHHHhcccCCCcCEEEEehhH
Confidence 555777777777655444448999999999
No 498
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.43 E-value=0.2 Score=49.96 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.|++||||||++-.+.-
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999998876553
No 499
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.42 E-value=0.12 Score=55.47 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l 86 (584)
.+.+++.||+|+|||+++-.+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA 237 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVA 237 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHH
Confidence 4569999999999997655443
No 500
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.41 E-value=0.12 Score=48.82 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.|+.|+||||++-.+.-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999998875543
Done!