Query 007931
Match_columns 584
No_of_seqs 423 out of 3331
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 14:01:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 1.7E-90 6E-95 777.8 53.9 537 26-582 71-619 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 2E-56 6.8E-61 504.2 30.4 517 27-578 8-613 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-55 3.7E-60 496.7 31.2 511 28-577 2-591 (702)
4 2zj8_A DNA helicase, putative 100.0 1.6E-53 5.5E-58 480.4 27.5 459 28-528 2-535 (720)
5 4f92_B U5 small nuclear ribonu 100.0 2.1E-41 7.2E-46 405.1 27.8 462 36-525 913-1461(1724)
6 3eiq_A Eukaryotic initiation f 100.0 2.7E-42 9.3E-47 364.1 14.1 338 26-413 39-391 (414)
7 4f92_B U5 small nuclear ribonu 100.0 1.1E-40 3.7E-45 399.0 27.4 441 52-517 81-621 (1724)
8 2db3_A ATP-dependent RNA helic 100.0 1.9E-40 6.4E-45 351.9 24.7 334 26-409 55-407 (434)
9 3pey_A ATP-dependent RNA helic 100.0 5.6E-40 1.9E-44 343.9 27.7 340 26-410 4-357 (395)
10 1s2m_A Putative ATP-dependent 100.0 4.3E-40 1.5E-44 345.8 25.2 339 23-413 17-369 (400)
11 3fht_A ATP-dependent RNA helic 100.0 7.1E-40 2.4E-44 345.3 25.5 342 25-410 23-380 (412)
12 1hv8_A Putative ATP-dependent 100.0 5.2E-40 1.8E-44 340.6 23.7 334 27-413 6-349 (367)
13 3l9o_A ATP-dependent RNA helic 100.0 5.4E-40 1.8E-44 380.5 23.1 351 26-409 161-597 (1108)
14 2j0s_A ATP-dependent RNA helic 100.0 1.7E-40 5.9E-45 350.1 16.7 342 25-412 35-386 (410)
15 2v1x_A ATP-dependent DNA helic 100.0 1.3E-39 4.4E-44 355.8 22.2 338 24-413 18-378 (591)
16 1xti_A Probable ATP-dependent 100.0 6E-39 2.1E-43 335.9 26.1 336 25-410 6-358 (391)
17 2i4i_A ATP-dependent RNA helic 100.0 5.4E-40 1.8E-44 347.0 18.2 338 26-413 14-387 (417)
18 3fmp_B ATP-dependent RNA helic 100.0 1.1E-39 3.8E-44 350.9 17.6 341 26-410 91-447 (479)
19 3o8b_A HCV NS3 protease/helica 100.0 8.2E-40 2.8E-44 355.1 16.3 304 42-411 209-516 (666)
20 1fuu_A Yeast initiation factor 100.0 2.7E-40 9.4E-45 346.3 11.1 338 27-413 21-370 (394)
21 1oyw_A RECQ helicase, ATP-depe 100.0 6.7E-39 2.3E-43 346.6 17.6 329 28-412 3-346 (523)
22 2whx_A Serine protease/ntpase/ 100.0 3.6E-39 1.2E-43 353.3 15.4 319 29-407 151-476 (618)
23 4a4z_A Antiviral helicase SKI2 100.0 1.2E-38 4.2E-43 366.1 14.4 328 47-407 36-490 (997)
24 2jlq_A Serine protease subunit 100.0 3.9E-38 1.3E-42 335.0 16.4 293 57-407 11-309 (451)
25 2z83_A Helicase/nucleoside tri 100.0 1.4E-37 4.7E-42 331.3 18.8 294 59-409 15-313 (459)
26 2xgj_A ATP-dependent RNA helic 100.0 3.3E-37 1.1E-41 354.2 22.8 334 44-409 80-499 (1010)
27 2ykg_A Probable ATP-dependent 100.0 1E-37 3.5E-42 351.1 16.1 364 49-437 12-553 (696)
28 2z0m_A 337AA long hypothetical 100.0 3.6E-37 1.2E-41 315.5 18.3 299 49-407 15-321 (337)
29 3fho_A ATP-dependent RNA helic 100.0 8.6E-38 2.9E-42 337.8 12.2 317 51-409 142-470 (508)
30 3i5x_A ATP-dependent RNA helic 100.0 1.5E-36 5.2E-41 333.2 20.0 335 34-412 79-452 (563)
31 3sqw_A ATP-dependent RNA helic 100.0 1.4E-36 4.9E-41 333.9 17.3 340 28-411 18-400 (579)
32 3rc3_A ATP-dependent RNA helic 100.0 1.3E-36 4.3E-41 334.1 16.8 314 63-439 153-476 (677)
33 1wp9_A ATP-dependent RNA helic 100.0 1.2E-35 4.2E-40 319.1 21.5 336 48-413 7-479 (494)
34 4a2p_A RIG-I, retinoic acid in 100.0 2.2E-35 7.5E-40 323.4 21.0 346 48-413 5-512 (556)
35 1yks_A Genome polyprotein [con 100.0 5E-35 1.7E-39 309.7 20.9 290 61-407 4-297 (440)
36 2v6i_A RNA helicase; membrane, 100.0 4.9E-35 1.7E-39 309.2 18.8 286 64-407 1-288 (431)
37 3tbk_A RIG-I helicase domain; 100.0 9.5E-35 3.2E-39 318.1 20.2 345 49-413 3-511 (555)
38 3oiy_A Reverse gyrase helicase 100.0 9.3E-36 3.2E-40 314.4 11.7 309 40-410 11-366 (414)
39 4a2q_A RIG-I, retinoic acid in 100.0 4.8E-34 1.6E-38 324.8 22.1 346 48-413 246-753 (797)
40 2wv9_A Flavivirin protease NS2 100.0 4.2E-34 1.4E-38 315.1 18.2 290 61-407 237-531 (673)
41 4gl2_A Interferon-induced heli 100.0 4E-35 1.4E-39 330.2 6.1 338 46-407 3-516 (699)
42 4a2w_A RIG-I, retinoic acid in 100.0 5.2E-33 1.8E-37 319.7 22.1 345 48-412 246-752 (936)
43 1gm5_A RECG; helicase, replica 100.0 7.4E-33 2.5E-37 308.7 9.8 307 47-407 365-695 (780)
44 2eyq_A TRCF, transcription-rep 100.0 3.3E-31 1.1E-35 308.9 23.0 320 33-409 587-922 (1151)
45 1gku_B Reverse gyrase, TOP-RG; 100.0 8.7E-32 3E-36 312.0 11.9 274 46-363 53-352 (1054)
46 2fwr_A DNA repair protein RAD2 100.0 1.2E-31 4.2E-36 287.7 10.7 311 48-413 91-458 (472)
47 4ddu_A Reverse gyrase; topoiso 100.0 1.6E-31 5.4E-36 309.7 12.1 274 47-364 75-388 (1104)
48 2oca_A DAR protein, ATP-depend 100.0 2E-30 6.9E-35 281.0 12.4 313 49-407 112-453 (510)
49 1tf5_A Preprotein translocase 100.0 6.4E-29 2.2E-33 271.9 23.6 321 50-410 83-546 (844)
50 3i4u_A ATP-dependent RNA helic 100.0 3.1E-29 1.1E-33 244.7 14.9 139 443-582 5-144 (270)
51 3h1t_A Type I site-specific re 100.0 1.4E-28 4.8E-33 271.1 17.7 319 50-399 178-545 (590)
52 2fsf_A Preprotein translocase 100.0 3.7E-28 1.3E-32 265.0 20.5 319 52-410 76-584 (853)
53 1nkt_A Preprotein translocase 100.0 2.4E-27 8.1E-32 259.0 22.0 322 51-409 112-617 (922)
54 3llm_A ATP-dependent RNA helic 99.9 8.1E-27 2.8E-31 226.1 18.9 180 37-219 48-231 (235)
55 3eaq_A Heat resistant RNA depe 99.9 3.2E-27 1.1E-31 224.9 5.3 172 265-464 20-211 (212)
56 3dmq_A RNA polymerase-associat 99.9 1.7E-25 5.7E-30 257.7 13.2 331 49-409 152-615 (968)
57 3i32_A Heat resistant RNA depe 99.9 5.5E-26 1.9E-30 226.5 5.2 174 268-469 20-213 (300)
58 1z63_A Helicase of the SNF2/RA 99.9 7.2E-24 2.5E-28 228.9 16.4 324 49-413 36-457 (500)
59 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 2.7E-23 9.3E-28 237.6 18.8 314 66-407 301-707 (1038)
60 3jux_A Protein translocase sub 99.9 1.4E-22 4.8E-27 216.8 20.4 121 259-410 459-588 (822)
61 1z3i_X Similar to RAD54-like; 99.9 7.9E-20 2.7E-24 202.3 26.7 113 274-413 414-532 (644)
62 1qde_A EIF4A, translation init 99.9 9.2E-21 3.2E-25 182.0 16.5 181 26-208 13-198 (224)
63 3mwy_W Chromo domain-containin 99.8 5.3E-21 1.8E-25 217.0 15.9 113 274-413 570-688 (800)
64 2rb4_A ATP-dependent RNA helic 99.8 6.4E-21 2.2E-25 175.8 10.9 128 264-412 22-150 (175)
65 3ber_A Probable ATP-dependent 99.8 7.1E-21 2.4E-25 185.9 11.7 192 24-218 40-241 (249)
66 2hjv_A ATP-dependent RNA helic 99.8 1.1E-20 3.8E-25 172.0 12.1 135 247-412 10-145 (163)
67 1q0u_A Bstdead; DEAD protein, 99.8 3.6E-20 1.2E-24 177.3 15.3 180 27-208 4-193 (219)
68 1vec_A ATP-dependent RNA helic 99.8 3E-20 1E-24 175.9 14.1 179 27-208 3-189 (206)
69 3bor_A Human initiation factor 99.8 4.7E-20 1.6E-24 178.7 15.1 188 25-215 28-225 (237)
70 1t5i_A C_terminal domain of A 99.8 1.1E-20 3.8E-25 173.4 9.8 132 247-409 6-138 (172)
71 2pl3_A Probable ATP-dependent 99.8 4.1E-20 1.4E-24 179.0 13.5 189 25-216 23-224 (236)
72 1fuk_A Eukaryotic initiation f 99.8 6.7E-21 2.3E-25 173.8 7.1 117 268-411 22-139 (165)
73 3fe2_A Probable ATP-dependent 99.8 2.9E-20 1E-24 180.8 11.6 191 25-217 27-230 (242)
74 3fmo_B ATP-dependent RNA helic 99.8 8.4E-20 2.9E-24 183.1 15.0 191 25-219 90-292 (300)
75 2jgn_A DBX, DDX3, ATP-dependen 99.8 2.2E-20 7.5E-25 173.5 8.9 136 247-412 20-156 (185)
76 1c4o_A DNA nucleotide excision 99.8 6.6E-20 2.3E-24 202.8 14.2 113 275-409 438-550 (664)
77 2d7d_A Uvrabc system protein B 99.8 5.8E-20 2E-24 203.2 13.2 113 275-409 444-556 (661)
78 3iuy_A Probable ATP-dependent 99.8 9.6E-20 3.3E-24 175.4 12.9 181 25-208 17-210 (228)
79 1t6n_A Probable ATP-dependent 99.8 1.3E-19 4.6E-24 173.4 13.6 188 26-215 13-211 (220)
80 2gxq_A Heat resistant RNA depe 99.8 1.2E-19 4E-24 172.0 12.5 189 28-219 2-200 (207)
81 2oxc_A Probable ATP-dependent 99.8 1E-19 3.5E-24 175.5 11.4 182 25-209 22-211 (230)
82 2p6n_A ATP-dependent RNA helic 99.8 6.5E-20 2.2E-24 171.1 8.9 107 276-409 54-161 (191)
83 1wrb_A DJVLGB; RNA helicase, D 99.8 4.6E-19 1.6E-23 173.5 12.7 190 25-216 21-231 (253)
84 3ly5_A ATP-dependent RNA helic 99.8 1.4E-19 4.7E-24 178.1 8.9 189 25-215 50-253 (262)
85 2yjt_D ATP-dependent RNA helic 99.7 8.5E-21 2.9E-25 174.0 0.0 118 268-412 22-140 (170)
86 3dkp_A Probable ATP-dependent 99.8 7.9E-19 2.7E-23 170.9 13.6 187 27-216 25-232 (245)
87 3b6e_A Interferon-induced heli 99.7 2.8E-17 9.5E-22 156.4 9.2 160 45-205 28-216 (216)
88 2ipc_A Preprotein translocase 99.7 1.9E-15 6.4E-20 165.1 23.9 117 52-174 81-212 (997)
89 2vl7_A XPD; helicase, unknown 99.6 6.6E-16 2.3E-20 167.3 13.3 128 261-405 370-518 (540)
90 1rif_A DAR protein, DNA helica 99.6 7.2E-15 2.4E-19 146.0 9.6 149 49-206 112-262 (282)
91 2fz4_A DNA repair protein RAD2 99.5 3.5E-13 1.2E-17 130.0 14.3 137 49-207 92-229 (237)
92 3crv_A XPD/RAD3 related DNA he 99.5 1.6E-12 5.4E-17 141.3 20.7 129 258-404 376-527 (551)
93 1z5z_A Helicase of the SNF2/RA 99.4 1.3E-13 4.4E-18 135.5 5.7 113 275-413 111-228 (271)
94 4a15_A XPD helicase, ATP-depen 99.1 9.9E-10 3.4E-14 120.3 16.6 131 259-405 432-581 (620)
95 1w36_D RECD, exodeoxyribonucle 98.1 1E-05 3.4E-10 88.5 12.3 141 53-205 152-298 (608)
96 3e1s_A Exodeoxyribonuclease V, 97.8 5.5E-05 1.9E-09 81.8 10.2 59 48-107 187-245 (574)
97 3upu_A ATP-dependent DNA helic 97.7 9.1E-05 3.1E-09 78.2 10.6 61 52-113 27-92 (459)
98 2b8t_A Thymidine kinase; deoxy 97.6 0.00028 9.7E-09 66.3 10.8 115 63-204 10-124 (223)
99 3kl4_A SRP54, signal recogniti 97.6 0.00034 1.2E-08 72.4 12.3 133 66-216 98-235 (433)
100 3ec2_A DNA replication protein 97.4 0.001 3.5E-08 60.3 11.8 25 64-88 37-61 (180)
101 3dm5_A SRP54, signal recogniti 97.3 0.0012 4.2E-08 68.2 12.1 132 66-216 101-236 (443)
102 2orw_A Thymidine kinase; TMTK, 97.3 0.00073 2.5E-08 61.6 8.7 39 64-103 2-40 (184)
103 3te6_A Regulatory protein SIR3 97.2 0.0021 7.3E-08 63.6 12.2 123 64-207 44-174 (318)
104 1xx6_A Thymidine kinase; NESG, 97.2 0.0018 6.1E-08 59.3 9.9 39 64-103 7-45 (191)
105 2o0j_A Terminase, DNA packagin 97.2 0.0089 3.1E-07 60.8 16.0 153 48-216 161-324 (385)
106 3n70_A Transport activator; si 97.1 0.0029 9.8E-08 55.1 10.8 31 55-85 14-44 (145)
107 3lfu_A DNA helicase II; SF1 he 97.1 0.008 2.7E-07 66.1 16.6 67 51-120 10-79 (647)
108 1njg_A DNA polymerase III subu 97.1 0.0045 1.5E-07 58.3 12.4 33 56-88 33-68 (250)
109 2chg_A Replication factor C sm 97.1 0.0056 1.9E-07 56.8 12.8 32 56-87 27-60 (226)
110 1vma_A Cell division protein F 97.0 0.0058 2E-07 60.3 12.8 123 65-206 104-234 (306)
111 2kjq_A DNAA-related protein; s 97.0 0.00045 1.6E-08 60.6 4.1 25 64-88 35-59 (149)
112 1fnn_A CDC6P, cell division co 97.0 0.0031 1.1E-07 64.5 10.9 116 67-206 46-169 (389)
113 1sxj_D Activator 1 41 kDa subu 96.8 0.0014 4.7E-08 66.3 6.7 31 57-87 48-80 (353)
114 1jr3_A DNA polymerase III subu 96.8 0.0048 1.6E-07 62.7 10.9 52 150-203 105-156 (373)
115 3cpe_A Terminase, DNA packagin 96.8 0.014 4.7E-07 63.5 14.9 69 49-118 162-231 (592)
116 1a5t_A Delta prime, HOLB; zinc 96.8 0.0068 2.3E-07 60.8 11.3 53 151-205 95-147 (334)
117 2px0_A Flagellar biosynthesis 96.8 0.0057 2E-07 60.1 10.2 128 64-215 104-233 (296)
118 2j9r_A Thymidine kinase; TK1, 96.7 0.0037 1.3E-07 57.8 8.2 40 64-104 27-66 (214)
119 2bjv_A PSP operon transcriptio 96.7 0.0087 3E-07 57.7 11.2 40 60-100 24-63 (265)
120 3co5_A Putative two-component 96.7 0.0048 1.6E-07 53.5 8.0 30 54-83 16-45 (143)
121 3vkw_A Replicase large subunit 96.6 0.0034 1.2E-07 64.7 7.9 108 65-205 161-269 (446)
122 2w58_A DNAI, primosome compone 96.6 0.0027 9.4E-08 58.5 6.6 35 66-101 55-89 (202)
123 4b3f_X DNA-binding protein smu 96.6 0.0026 9E-08 70.0 7.5 65 51-117 190-255 (646)
124 3bos_A Putative DNA replicatio 96.6 0.0039 1.4E-07 58.8 7.8 25 64-88 51-75 (242)
125 2v1u_A Cell division control p 96.6 0.0028 9.4E-08 64.7 6.9 25 64-88 43-67 (387)
126 3e70_C DPA, signal recognition 96.4 0.0082 2.8E-07 59.9 8.9 125 64-207 128-254 (328)
127 2cvh_A DNA repair and recombin 96.4 0.0055 1.9E-07 57.1 7.3 40 61-104 16-55 (220)
128 1l8q_A Chromosomal replication 96.4 0.014 4.9E-07 58.0 10.8 36 65-101 37-72 (324)
129 3syl_A Protein CBBX; photosynt 96.4 0.0092 3.1E-07 58.9 9.3 42 165-206 131-179 (309)
130 3e2i_A Thymidine kinase; Zn-bi 96.4 0.0051 1.8E-07 56.8 6.7 41 63-104 26-66 (219)
131 2qgz_A Helicase loader, putati 96.4 0.0042 1.4E-07 61.6 6.6 38 65-102 152-189 (308)
132 3u61_B DNA polymerase accessor 96.4 0.026 9E-07 56.0 12.6 41 162-203 103-143 (324)
133 2gno_A DNA polymerase III, gam 96.4 0.017 5.7E-07 57.0 10.6 51 151-203 69-119 (305)
134 1w4r_A Thymidine kinase; type 96.3 0.008 2.7E-07 54.7 7.3 39 64-103 19-57 (195)
135 1ojl_A Transcriptional regulat 96.3 0.0071 2.4E-07 59.8 7.6 28 60-87 20-47 (304)
136 1ls1_A Signal recognition part 96.3 0.041 1.4E-06 54.0 13.0 124 65-206 98-222 (295)
137 1sxj_E Activator 1 40 kDa subu 96.3 0.028 9.7E-07 56.5 12.1 43 162-206 132-174 (354)
138 1iqp_A RFCS; clamp loader, ext 96.2 0.024 8.3E-07 56.1 11.3 31 57-87 36-68 (327)
139 2qen_A Walker-type ATPase; unk 96.2 0.015 5.3E-07 58.1 9.8 35 55-89 21-55 (350)
140 2gk6_A Regulator of nonsense t 96.2 0.0091 3.1E-07 65.3 8.6 66 51-117 181-246 (624)
141 2orv_A Thymidine kinase; TP4A 96.2 0.024 8.2E-07 52.9 9.8 40 64-104 18-57 (234)
142 2qby_B CDC6 homolog 3, cell di 96.1 0.015 5.3E-07 59.1 9.4 23 450-472 316-338 (384)
143 2r6a_A DNAB helicase, replicat 96.0 0.015 5.1E-07 61.0 8.9 58 56-115 194-251 (454)
144 3h4m_A Proteasome-activating n 96.0 0.013 4.6E-07 57.0 7.8 59 27-88 14-74 (285)
145 1hqc_A RUVB; extended AAA-ATPa 95.9 0.06 2.1E-06 53.3 12.4 23 65-87 38-60 (324)
146 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.031 1E-06 55.6 10.1 24 65-88 45-68 (322)
147 2qby_A CDC6 homolog 1, cell di 95.9 0.0095 3.3E-07 60.6 6.5 24 65-88 45-68 (386)
148 1sxj_C Activator 1 40 kDa subu 95.9 0.021 7E-07 57.4 8.9 32 56-87 35-68 (340)
149 1w5s_A Origin recognition comp 95.9 0.012 4E-07 60.6 7.1 24 65-88 50-75 (412)
150 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.026 8.8E-07 54.0 9.0 25 64-88 38-62 (262)
151 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.009 3.1E-07 56.1 5.6 42 61-103 19-60 (235)
152 2wjy_A Regulator of nonsense t 95.8 0.02 6.8E-07 64.2 8.9 66 51-117 357-422 (800)
153 2xzl_A ATP-dependent helicase 95.8 0.015 5E-07 65.4 7.7 66 51-117 361-426 (802)
154 3pfi_A Holliday junction ATP-d 95.7 0.044 1.5E-06 54.7 10.4 22 66-87 56-77 (338)
155 3b9p_A CG5977-PA, isoform A; A 95.7 0.035 1.2E-06 54.3 9.4 24 65-88 54-77 (297)
156 1sxj_B Activator 1 37 kDa subu 95.6 0.027 9.1E-07 55.7 8.3 31 57-87 32-64 (323)
157 2zpa_A Uncharacterized protein 95.6 0.031 1E-06 60.6 9.1 110 53-207 178-289 (671)
158 3vfd_A Spastin; ATPase, microt 95.6 0.036 1.2E-06 56.8 9.3 24 65-88 148-171 (389)
159 2z4s_A Chromosomal replication 95.5 0.086 2.9E-06 54.8 11.9 37 65-101 130-167 (440)
160 3k1j_A LON protease, ATP-depen 95.5 0.23 7.7E-06 54.0 15.7 34 54-87 49-82 (604)
161 2ffh_A Protein (FFH); SRP54, s 95.3 0.14 4.9E-06 52.6 12.8 124 65-206 98-222 (425)
162 2fna_A Conserved hypothetical 95.3 0.1 3.4E-06 52.2 11.5 32 56-89 23-54 (357)
163 2yhs_A FTSY, cell division pro 95.3 0.051 1.7E-06 56.8 9.1 41 65-106 293-334 (503)
164 1sxj_A Activator 1 95 kDa subu 95.1 0.11 3.8E-06 55.2 11.6 25 65-89 77-101 (516)
165 2qp9_X Vacuolar protein sortin 95.1 0.035 1.2E-06 56.1 7.1 25 65-89 84-108 (355)
166 3pvs_A Replication-associated 94.9 0.042 1.4E-06 57.3 7.5 31 58-88 41-73 (447)
167 1d2n_A N-ethylmaleimide-sensit 94.9 0.052 1.8E-06 52.4 7.7 23 66-88 65-87 (272)
168 1j8m_F SRP54, signal recogniti 94.9 0.15 5.2E-06 49.8 10.9 123 65-206 98-224 (297)
169 1zu4_A FTSY; GTPase, signal re 94.9 0.23 7.8E-06 49.1 12.3 43 65-108 105-148 (320)
170 4b4t_H 26S protease regulatory 94.7 0.06 2.1E-06 55.6 7.8 59 28-89 207-267 (467)
171 3eie_A Vacuolar protein sortin 94.7 0.046 1.6E-06 54.3 6.7 24 65-88 51-74 (322)
172 2chq_A Replication factor C sm 94.6 0.04 1.4E-06 54.3 6.1 21 67-87 40-60 (319)
173 2zan_A Vacuolar protein sortin 94.6 0.062 2.1E-06 56.0 7.6 24 65-88 167-190 (444)
174 2j37_W Signal recognition part 94.5 0.21 7.2E-06 52.6 11.5 121 67-206 103-225 (504)
175 4fcw_A Chaperone protein CLPB; 94.5 0.054 1.9E-06 53.2 6.8 22 66-87 48-69 (311)
176 3b85_A Phosphate starvation-in 94.5 0.031 1E-06 51.8 4.5 35 54-88 11-45 (208)
177 1xp8_A RECA protein, recombina 94.4 0.16 5.6E-06 51.2 10.2 43 61-104 70-112 (366)
178 4b4t_J 26S protease regulatory 94.2 0.071 2.4E-06 54.3 6.9 24 65-88 182-205 (405)
179 2eyu_A Twitching motility prot 94.2 0.027 9.1E-07 54.2 3.6 26 62-87 22-47 (261)
180 2v3c_C SRP54, signal recogniti 94.2 0.04 1.4E-06 57.1 5.2 120 66-206 100-222 (432)
181 3pxi_A Negative regulator of g 94.2 0.16 5.4E-06 56.8 10.4 19 67-85 523-541 (758)
182 3hr8_A Protein RECA; alpha and 94.1 0.04 1.4E-06 55.4 4.9 45 61-106 57-101 (356)
183 4b4t_M 26S protease regulatory 94.0 0.035 1.2E-06 57.3 4.2 61 26-89 177-239 (434)
184 1kgd_A CASK, peripheral plasma 93.9 0.036 1.2E-06 49.9 3.7 25 64-88 4-28 (180)
185 2xxa_A Signal recognition part 93.8 0.35 1.2E-05 50.0 11.4 123 66-206 101-225 (433)
186 3io5_A Recombination and repai 93.6 0.095 3.3E-06 51.4 6.3 56 62-123 26-82 (333)
187 2zts_A Putative uncharacterize 93.6 0.034 1.2E-06 52.7 3.1 43 61-103 26-68 (251)
188 3jvv_A Twitching mobility prot 93.6 0.05 1.7E-06 54.8 4.4 41 63-103 121-161 (356)
189 3tr0_A Guanylate kinase, GMP k 93.5 0.041 1.4E-06 50.4 3.4 26 62-87 4-29 (205)
190 2gza_A Type IV secretion syste 93.5 0.05 1.7E-06 55.0 4.3 45 56-102 166-210 (361)
191 2ce7_A Cell division protein F 93.5 0.1 3.5E-06 54.6 6.8 23 66-88 50-72 (476)
192 1lvg_A Guanylate kinase, GMP k 93.4 0.039 1.3E-06 50.5 3.1 24 64-87 3-26 (198)
193 3b9q_A Chloroplast SRP recepto 93.4 0.091 3.1E-06 51.6 5.8 44 64-108 99-143 (302)
194 2ehv_A Hypothetical protein PH 93.2 0.042 1.4E-06 52.0 3.1 42 61-102 26-67 (251)
195 2oap_1 GSPE-2, type II secreti 93.2 0.053 1.8E-06 57.5 4.0 31 56-86 251-281 (511)
196 2ewv_A Twitching motility prot 93.1 0.047 1.6E-06 55.4 3.4 42 62-103 133-174 (372)
197 4gp7_A Metallophosphoesterase; 93.1 0.029 1E-06 50.1 1.7 22 63-84 7-28 (171)
198 3tau_A Guanylate kinase, GMP k 93.1 0.056 1.9E-06 49.9 3.6 26 63-88 6-31 (208)
199 3hu3_A Transitional endoplasmi 93.1 0.074 2.5E-06 56.1 5.0 24 64-87 237-260 (489)
200 4b4t_L 26S protease subunit RP 93.1 0.13 4.6E-06 53.0 6.7 25 65-89 215-239 (437)
201 1n0w_A DNA repair protein RAD5 93.0 0.08 2.7E-06 49.8 4.7 43 61-103 20-67 (243)
202 1z6g_A Guanylate kinase; struc 92.9 0.054 1.8E-06 50.5 3.3 28 61-88 19-46 (218)
203 1cr0_A DNA primase/helicase; R 92.9 0.058 2E-06 52.8 3.6 47 56-102 26-72 (296)
204 4b4t_I 26S protease regulatory 92.9 0.13 4.3E-06 52.7 6.2 24 65-88 216-239 (437)
205 3ney_A 55 kDa erythrocyte memb 92.9 0.065 2.2E-06 49.0 3.7 25 64-88 18-42 (197)
206 1zp6_A Hypothetical protein AT 92.9 0.042 1.4E-06 49.7 2.4 27 61-87 5-31 (191)
207 1znw_A Guanylate kinase, GMP k 92.9 0.063 2.1E-06 49.5 3.6 27 61-87 16-42 (207)
208 1uaa_A REP helicase, protein ( 92.8 0.19 6.3E-06 55.5 7.8 65 52-120 4-72 (673)
209 4b4t_K 26S protease regulatory 92.8 0.19 6.7E-06 51.6 7.4 24 65-88 206-229 (428)
210 2dr3_A UPF0273 protein PH0284; 92.7 0.077 2.6E-06 50.0 4.0 43 61-104 19-61 (247)
211 1s96_A Guanylate kinase, GMP k 92.6 0.072 2.5E-06 49.7 3.6 28 61-88 12-39 (219)
212 2j41_A Guanylate kinase; GMP, 92.6 0.067 2.3E-06 49.0 3.4 26 62-87 3-28 (207)
213 3a00_A Guanylate kinase, GMP k 92.5 0.065 2.2E-06 48.4 3.2 24 65-88 1-24 (186)
214 1jbk_A CLPB protein; beta barr 92.5 0.14 4.9E-06 45.7 5.5 32 56-87 32-65 (195)
215 1p9r_A General secretion pathw 92.5 0.17 5.8E-06 52.1 6.6 37 63-100 165-201 (418)
216 2og2_A Putative signal recogni 92.5 0.14 4.7E-06 51.5 5.7 43 65-108 157-200 (359)
217 2pt7_A CAG-ALFA; ATPase, prote 92.5 0.067 2.3E-06 53.3 3.4 31 57-87 163-193 (330)
218 3cmu_A Protein RECA, recombina 92.1 0.11 3.8E-06 63.1 5.2 43 62-105 1424-1466(2050)
219 3b5x_A Lipid A export ATP-bind 92.0 0.34 1.2E-05 52.2 8.6 26 62-87 366-391 (582)
220 4a74_A DNA repair and recombin 91.9 0.14 4.9E-06 47.6 4.8 43 61-103 21-68 (231)
221 1rj9_A FTSY, signal recognitio 91.9 0.15 5.2E-06 50.0 5.1 37 64-101 101-137 (304)
222 2qor_A Guanylate kinase; phosp 91.9 0.075 2.6E-06 48.8 2.7 27 62-88 9-35 (204)
223 3bh0_A DNAB-like replicative h 91.8 0.16 5.4E-06 50.3 5.2 58 56-116 59-116 (315)
224 3hgt_A HDA1 complex subunit 3; 91.8 0.56 1.9E-05 46.0 9.0 110 275-413 124-241 (328)
225 2p65_A Hypothetical protein PF 91.8 0.15 5.1E-06 45.4 4.6 33 56-88 32-66 (187)
226 3vaa_A Shikimate kinase, SK; s 91.8 0.11 3.6E-06 47.6 3.6 28 62-89 22-49 (199)
227 2dhr_A FTSH; AAA+ protein, hex 91.7 0.47 1.6E-05 49.9 8.9 23 66-88 65-87 (499)
228 2z43_A DNA repair and recombin 91.6 0.18 6.1E-06 50.1 5.3 44 61-104 103-151 (324)
229 4aby_A DNA repair protein RECN 91.6 0.36 1.2E-05 49.5 7.9 39 166-205 317-355 (415)
230 3lnc_A Guanylate kinase, GMP k 91.5 0.066 2.2E-06 50.3 2.0 25 62-86 24-48 (231)
231 3cf2_A TER ATPase, transitiona 91.5 0.18 6E-06 56.2 5.6 23 66-88 239-261 (806)
232 1r6b_X CLPA protein; AAA+, N-t 91.5 0.31 1.1E-05 54.5 7.8 20 67-86 490-509 (758)
233 1ex7_A Guanylate kinase; subst 91.2 0.13 4.5E-06 46.5 3.5 24 66-89 2-25 (186)
234 3tif_A Uncharacterized ABC tra 91.2 0.097 3.3E-06 49.4 2.8 25 62-86 28-52 (235)
235 1v5w_A DMC1, meiotic recombina 91.1 0.23 7.8E-06 49.7 5.6 44 61-104 118-166 (343)
236 1gm5_A RECG; helicase, replica 91.1 0.19 6.6E-06 56.0 5.5 78 276-358 417-495 (780)
237 3umf_A Adenylate kinase; rossm 91.0 0.12 4.1E-06 48.0 3.2 28 62-89 26-53 (217)
238 1htw_A HI0065; nucleotide-bind 90.9 0.11 3.6E-06 45.7 2.5 27 63-89 31-57 (158)
239 3exa_A TRNA delta(2)-isopenten 90.8 0.13 4.3E-06 50.5 3.1 23 65-87 3-25 (322)
240 3lw7_A Adenylate kinase relate 90.8 0.13 4.5E-06 45.3 3.1 20 66-85 2-21 (179)
241 4eun_A Thermoresistant glucoki 90.7 0.15 5.3E-06 46.5 3.6 25 63-87 27-51 (200)
242 2v9p_A Replication protein E1; 90.7 0.14 4.9E-06 50.1 3.6 31 58-88 119-149 (305)
243 1pjr_A PCRA; DNA repair, DNA r 90.7 0.38 1.3E-05 53.4 7.5 66 51-120 12-81 (724)
244 3a8t_A Adenylate isopentenyltr 90.7 0.12 4.3E-06 51.1 3.1 23 65-87 40-62 (339)
245 1nlf_A Regulatory protein REPA 90.7 0.18 6.1E-06 48.8 4.2 28 61-88 26-53 (279)
246 1qvr_A CLPB protein; coiled co 90.5 0.27 9.3E-06 55.7 6.2 21 66-86 589-609 (854)
247 2q6t_A DNAB replication FORK h 90.5 0.15 5E-06 53.2 3.6 64 56-121 191-255 (444)
248 2cbz_A Multidrug resistance-as 90.4 0.13 4.3E-06 48.6 2.8 25 62-86 28-52 (237)
249 3trf_A Shikimate kinase, SK; a 90.4 0.19 6.5E-06 45.0 3.9 24 65-88 5-28 (185)
250 3c8u_A Fructokinase; YP_612366 90.3 0.13 4.5E-06 47.3 2.8 23 64-86 21-43 (208)
251 1kag_A SKI, shikimate kinase I 90.3 0.16 5.5E-06 44.9 3.3 24 65-88 4-27 (173)
252 2ze6_A Isopentenyl transferase 90.3 0.17 5.7E-06 48.3 3.6 22 67-88 3-24 (253)
253 3gfo_A Cobalt import ATP-bindi 90.3 0.13 4.3E-06 49.8 2.7 25 62-86 31-55 (275)
254 1qvr_A CLPB protein; coiled co 90.3 0.3 1E-05 55.4 6.2 33 56-88 180-214 (854)
255 1kht_A Adenylate kinase; phosp 90.1 0.19 6.4E-06 45.2 3.6 23 65-87 3-25 (192)
256 2pcj_A ABC transporter, lipopr 90.1 0.13 4.5E-06 48.1 2.6 25 62-86 27-51 (224)
257 3u4q_A ATP-dependent helicase/ 90.1 0.33 1.1E-05 57.4 6.5 68 49-119 9-81 (1232)
258 2qmh_A HPR kinase/phosphorylas 89.9 0.16 5.5E-06 46.2 2.9 23 65-87 34-56 (205)
259 1sgw_A Putative ABC transporte 89.9 0.13 4.6E-06 47.6 2.4 25 62-86 32-56 (214)
260 1zd8_A GTP:AMP phosphotransfer 89.9 0.22 7.6E-06 46.4 4.0 27 63-89 5-31 (227)
261 3foz_A TRNA delta(2)-isopenten 89.8 0.18 6.1E-06 49.3 3.3 23 66-88 11-33 (316)
262 4a1f_A DNAB helicase, replicat 89.8 0.19 6.6E-06 50.0 3.7 58 55-115 36-93 (338)
263 1qhx_A CPT, protein (chloramph 89.8 0.21 7.2E-06 44.4 3.6 24 65-88 3-26 (178)
264 2pze_A Cystic fibrosis transme 89.7 0.15 5.3E-06 47.8 2.7 24 63-86 32-55 (229)
265 2bdt_A BH3686; alpha-beta prot 89.7 0.15 5E-06 46.0 2.5 22 66-87 3-24 (189)
266 3cm0_A Adenylate kinase; ATP-b 89.7 0.15 5.2E-06 45.7 2.6 25 64-88 3-27 (186)
267 3kb2_A SPBC2 prophage-derived 89.7 0.2 6.8E-06 44.1 3.4 22 67-88 3-24 (173)
268 2ff7_A Alpha-hemolysin translo 89.7 0.15 5.2E-06 48.4 2.7 25 62-86 32-56 (247)
269 2zu0_C Probable ATP-dependent 89.7 0.17 5.7E-06 48.8 3.0 26 62-87 43-68 (267)
270 1q57_A DNA primase/helicase; d 89.7 0.19 6.5E-06 53.2 3.7 60 54-115 231-290 (503)
271 3bgw_A DNAB-like replicative h 89.6 0.18 6.2E-06 52.4 3.4 47 56-103 188-234 (444)
272 4f4c_A Multidrug resistance pr 89.6 0.093 3.2E-06 62.3 1.3 26 62-87 1102-1127(1321)
273 2d2e_A SUFC protein; ABC-ATPas 89.5 0.17 5.7E-06 48.2 2.9 26 62-87 26-51 (250)
274 2c95_A Adenylate kinase 1; tra 89.5 0.27 9.3E-06 44.3 4.2 27 62-88 6-32 (196)
275 3asz_A Uridine kinase; cytidin 89.5 0.18 6.1E-06 46.3 3.0 25 63-87 4-28 (211)
276 4g1u_C Hemin import ATP-bindin 89.5 0.16 5.5E-06 48.8 2.7 25 62-86 34-58 (266)
277 1knq_A Gluconate kinase; ALFA/ 89.4 0.19 6.4E-06 44.6 3.0 23 65-87 8-30 (175)
278 1ly1_A Polynucleotide kinase; 89.4 0.21 7.2E-06 44.3 3.3 22 66-87 3-24 (181)
279 1ji0_A ABC transporter; ATP bi 89.4 0.16 5.6E-06 47.9 2.7 25 62-86 29-53 (240)
280 1g6h_A High-affinity branched- 89.4 0.16 5.6E-06 48.5 2.7 25 62-86 30-54 (257)
281 2ghi_A Transport protein; mult 89.4 0.17 5.8E-06 48.5 2.8 25 62-86 43-67 (260)
282 1b0u_A Histidine permease; ABC 89.4 0.17 5.8E-06 48.5 2.8 25 62-86 29-53 (262)
283 2bwj_A Adenylate kinase 5; pho 89.3 0.29 1E-05 44.2 4.3 28 61-88 8-35 (199)
284 3nh6_A ATP-binding cassette SU 89.3 0.13 4.3E-06 50.6 1.8 25 62-86 77-101 (306)
285 1ye8_A Protein THEP1, hypothet 89.3 0.23 7.9E-06 44.5 3.5 21 67-87 2-22 (178)
286 3sr0_A Adenylate kinase; phosp 89.2 0.24 8.1E-06 45.6 3.6 24 67-90 2-25 (206)
287 2olj_A Amino acid ABC transpor 89.2 0.18 6.1E-06 48.4 2.8 25 62-86 47-71 (263)
288 1mv5_A LMRA, multidrug resista 89.2 0.15 5.2E-06 48.3 2.3 25 62-86 25-49 (243)
289 1vpl_A ABC transporter, ATP-bi 89.2 0.18 6.2E-06 48.1 2.8 25 62-86 38-62 (256)
290 3uie_A Adenylyl-sulfate kinase 89.1 0.2 6.7E-06 45.7 2.9 25 63-87 23-47 (200)
291 3lda_A DNA repair protein RAD5 89.0 0.3 1E-05 49.8 4.5 41 63-103 176-221 (400)
292 1f2t_A RAD50 ABC-ATPase; DNA d 89.0 0.24 8.2E-06 42.9 3.2 21 66-86 24-44 (149)
293 2v54_A DTMP kinase, thymidylat 89.0 0.21 7.2E-06 45.4 3.1 24 64-87 3-26 (204)
294 3iij_A Coilin-interacting nucl 89.0 0.2 6.9E-06 44.7 2.9 25 64-88 10-34 (180)
295 1pzn_A RAD51, DNA repair and r 89.0 0.27 9.2E-06 49.3 4.1 41 62-102 128-173 (349)
296 1g5t_A COB(I)alamin adenosyltr 89.0 0.38 1.3E-05 43.6 4.6 36 64-100 27-62 (196)
297 3kta_A Chromosome segregation 89.0 0.26 8.9E-06 44.0 3.6 22 66-87 27-48 (182)
298 1tf7_A KAIC; homohexamer, hexa 88.8 0.15 5.1E-06 54.3 2.2 46 57-102 30-76 (525)
299 2ixe_A Antigen peptide transpo 88.8 0.19 6.6E-06 48.4 2.8 25 62-86 42-66 (271)
300 2qi9_C Vitamin B12 import ATP- 88.8 0.2 6.7E-06 47.7 2.7 25 62-86 23-47 (249)
301 2ihy_A ABC transporter, ATP-bi 88.7 0.2 6.7E-06 48.6 2.7 25 62-86 44-68 (279)
302 2i3b_A HCR-ntpase, human cance 88.7 0.25 8.5E-06 44.8 3.2 24 65-88 1-24 (189)
303 2nq2_C Hypothetical ABC transp 88.7 0.2 6.7E-06 47.8 2.7 25 62-86 28-52 (253)
304 2rhm_A Putative kinase; P-loop 88.6 0.19 6.5E-06 45.3 2.4 25 64-88 4-28 (193)
305 1ofh_A ATP-dependent HSL prote 88.6 0.43 1.5E-05 46.5 5.2 24 65-88 50-73 (310)
306 2yz2_A Putative ABC transporte 88.5 0.21 7.1E-06 48.0 2.8 25 62-86 30-54 (266)
307 2zr9_A Protein RECA, recombina 88.5 0.29 9.9E-06 49.1 3.9 43 61-104 57-99 (349)
308 1e9r_A Conjugal transfer prote 88.5 0.26 8.9E-06 51.1 3.7 42 64-106 52-93 (437)
309 3tqc_A Pantothenate kinase; bi 88.5 0.75 2.6E-05 45.3 6.8 20 67-86 94-113 (321)
310 3m6a_A ATP-dependent protease 88.5 0.48 1.7E-05 50.6 5.8 23 65-87 108-130 (543)
311 4ag6_A VIRB4 ATPase, type IV s 88.4 0.37 1.3E-05 49.1 4.7 40 64-104 34-73 (392)
312 2r44_A Uncharacterized protein 88.3 0.35 1.2E-05 47.9 4.4 35 53-87 34-68 (331)
313 3tlx_A Adenylate kinase 2; str 88.3 0.33 1.1E-05 45.9 4.0 26 64-89 28-53 (243)
314 2f1r_A Molybdopterin-guanine d 88.3 0.18 6.2E-06 44.9 2.0 23 66-88 3-25 (171)
315 3cmu_A Protein RECA, recombina 88.3 0.25 8.6E-06 60.1 3.7 48 56-104 1070-1119(2050)
316 2i1q_A DNA repair and recombin 88.2 0.36 1.2E-05 47.7 4.3 29 61-89 94-122 (322)
317 1y63_A LMAJ004144AAA protein; 88.1 0.32 1.1E-05 43.7 3.5 25 64-88 9-33 (184)
318 1xjc_A MOBB protein homolog; s 88.0 0.32 1.1E-05 43.1 3.5 23 66-88 5-27 (169)
319 3t61_A Gluconokinase; PSI-biol 87.9 0.27 9.3E-06 44.8 3.0 23 66-88 19-41 (202)
320 1ny5_A Transcriptional regulat 87.9 1.6 5.4E-05 44.3 9.0 37 63-100 158-194 (387)
321 1gvn_B Zeta; postsegregational 87.8 0.42 1.4E-05 46.4 4.5 24 65-88 33-56 (287)
322 3aez_A Pantothenate kinase; tr 87.8 0.29 9.9E-06 48.2 3.3 25 62-86 87-111 (312)
323 1in4_A RUVB, holliday junction 87.8 0.4 1.4E-05 47.7 4.4 23 66-88 52-74 (334)
324 3crm_A TRNA delta(2)-isopenten 87.8 0.31 1.1E-05 48.0 3.5 23 66-88 6-28 (323)
325 1np6_A Molybdopterin-guanine d 87.8 0.34 1.2E-05 43.2 3.4 24 65-88 6-29 (174)
326 3d3q_A TRNA delta(2)-isopenten 87.8 0.29 9.9E-06 48.6 3.3 23 66-88 8-30 (340)
327 3cf0_A Transitional endoplasmi 87.7 0.33 1.1E-05 47.5 3.6 26 63-88 47-72 (301)
328 2qt1_A Nicotinamide riboside k 87.7 0.23 8E-06 45.4 2.4 24 63-86 19-42 (207)
329 1zuh_A Shikimate kinase; alpha 87.7 0.38 1.3E-05 42.3 3.7 23 66-88 8-30 (168)
330 2bbw_A Adenylate kinase 4, AK4 87.6 0.34 1.2E-05 45.8 3.6 24 65-88 27-50 (246)
331 4f4c_A Multidrug resistance pr 87.6 0.46 1.6E-05 56.4 5.4 27 62-88 441-467 (1321)
332 2onk_A Molybdate/tungstate ABC 87.6 0.27 9.1E-06 46.5 2.8 23 63-86 23-45 (240)
333 1nks_A Adenylate kinase; therm 87.5 0.31 1.1E-05 43.7 3.2 22 67-88 3-24 (194)
334 4eaq_A DTMP kinase, thymidylat 87.5 0.44 1.5E-05 44.6 4.2 26 64-89 25-50 (229)
335 1cke_A CK, MSSA, protein (cyti 87.5 0.35 1.2E-05 44.8 3.6 24 65-88 5-28 (227)
336 3fb4_A Adenylate kinase; psych 87.4 0.36 1.2E-05 44.4 3.6 23 67-89 2-24 (216)
337 3fvq_A Fe(3+) IONS import ATP- 87.4 0.27 9.2E-06 49.3 2.8 25 62-86 27-51 (359)
338 3dl0_A Adenylate kinase; phosp 87.3 0.39 1.3E-05 44.2 3.8 23 67-89 2-24 (216)
339 2pez_A Bifunctional 3'-phospho 87.2 0.32 1.1E-05 43.3 3.0 23 64-86 4-26 (179)
340 2jaq_A Deoxyguanosine kinase; 87.1 0.35 1.2E-05 43.8 3.3 23 67-89 2-24 (205)
341 1tev_A UMP-CMP kinase; ploop, 87.1 0.33 1.1E-05 43.6 3.1 24 65-88 3-26 (196)
342 2bbs_A Cystic fibrosis transme 87.1 0.27 9.3E-06 47.8 2.6 24 63-86 62-85 (290)
343 1ixz_A ATP-dependent metallopr 87.1 0.15 5.3E-06 48.4 0.8 23 66-88 50-72 (254)
344 2plr_A DTMP kinase, probable t 87.0 0.34 1.2E-05 44.3 3.1 25 65-89 4-28 (213)
345 1u94_A RECA protein, recombina 87.0 0.42 1.4E-05 48.0 4.0 42 61-103 59-100 (356)
346 1z47_A CYSA, putative ABC-tran 86.9 0.3 1E-05 48.9 2.9 25 62-86 38-62 (355)
347 3rlf_A Maltose/maltodextrin im 86.9 0.31 1.1E-05 49.3 3.0 24 63-86 27-50 (381)
348 3hws_A ATP-dependent CLP prote 86.9 0.64 2.2E-05 46.7 5.4 24 64-87 50-73 (363)
349 1lv7_A FTSH; alpha/beta domain 86.9 0.66 2.3E-05 44.0 5.2 24 65-88 45-68 (257)
350 1nij_A Hypothetical protein YJ 86.8 0.43 1.5E-05 47.1 3.9 23 66-88 5-27 (318)
351 3nbx_X ATPase RAVA; AAA+ ATPas 86.7 0.5 1.7E-05 49.8 4.5 33 53-85 29-61 (500)
352 1aky_A Adenylate kinase; ATP:A 86.6 0.48 1.6E-05 43.8 3.9 25 65-89 4-28 (220)
353 2jeo_A Uridine-cytidine kinase 86.6 0.32 1.1E-05 45.9 2.8 27 61-87 21-47 (245)
354 2yyz_A Sugar ABC transporter, 86.6 0.33 1.1E-05 48.8 2.9 24 63-86 27-50 (359)
355 1nn5_A Similar to deoxythymidy 86.5 0.39 1.3E-05 44.0 3.3 26 63-88 7-32 (215)
356 2yvu_A Probable adenylyl-sulfa 86.5 0.38 1.3E-05 43.1 3.1 25 64-88 12-36 (186)
357 1zak_A Adenylate kinase; ATP:A 86.4 0.38 1.3E-05 44.6 3.2 25 65-89 5-29 (222)
358 1ukz_A Uridylate kinase; trans 86.4 0.48 1.6E-05 43.1 3.8 24 66-89 16-39 (203)
359 3eph_A TRNA isopentenyltransfe 86.4 0.34 1.2E-05 49.2 2.9 22 66-87 3-24 (409)
360 2it1_A 362AA long hypothetical 86.3 0.35 1.2E-05 48.6 3.0 24 63-86 27-50 (362)
361 2ius_A DNA translocase FTSK; n 86.2 0.8 2.7E-05 48.2 5.7 25 63-87 165-189 (512)
362 2pjz_A Hypothetical protein ST 86.1 0.34 1.2E-05 46.4 2.7 24 62-86 28-51 (263)
363 2z0h_A DTMP kinase, thymidylat 86.1 0.42 1.5E-05 43.0 3.3 21 67-87 2-22 (197)
364 2wwf_A Thymidilate kinase, put 86.1 0.42 1.4E-05 43.7 3.2 24 64-87 9-32 (212)
365 3cmw_A Protein RECA, recombina 86.1 0.61 2.1E-05 56.0 5.3 56 63-124 1429-1484(1706)
366 3d31_A Sulfate/molybdate ABC t 86.1 0.31 1.1E-05 48.8 2.4 25 62-86 23-47 (348)
367 1gtv_A TMK, thymidylate kinase 86.0 0.23 7.7E-06 45.6 1.3 22 67-88 2-23 (214)
368 2vp4_A Deoxynucleoside kinase; 86.0 0.32 1.1E-05 45.5 2.4 22 64-85 19-40 (230)
369 3gd7_A Fusion complex of cysti 85.9 0.35 1.2E-05 49.1 2.8 25 62-86 44-68 (390)
370 1qf9_A UMP/CMP kinase, protein 85.8 0.43 1.5E-05 42.7 3.1 23 66-88 7-29 (194)
371 1v43_A Sugar-binding transport 85.8 0.38 1.3E-05 48.5 3.0 25 62-86 34-58 (372)
372 3qf7_A RAD50; ABC-ATPase, ATPa 85.7 0.45 1.5E-05 48.0 3.5 21 66-86 24-44 (365)
373 2cdn_A Adenylate kinase; phosp 85.7 0.52 1.8E-05 42.8 3.7 23 66-88 21-43 (201)
374 4e22_A Cytidylate kinase; P-lo 85.7 0.49 1.7E-05 44.9 3.6 26 63-88 25-50 (252)
375 1e6c_A Shikimate kinase; phosp 85.6 0.43 1.5E-05 42.0 2.9 23 66-88 3-25 (173)
376 1c9k_A COBU, adenosylcobinamid 85.6 0.63 2.2E-05 41.6 4.0 45 68-118 2-46 (180)
377 1g29_1 MALK, maltose transport 85.6 0.38 1.3E-05 48.6 2.9 25 62-86 26-50 (372)
378 3tui_C Methionine import ATP-b 85.6 0.4 1.4E-05 48.1 3.0 26 62-87 51-76 (366)
379 1iy2_A ATP-dependent metallopr 85.4 0.21 7.3E-06 48.2 0.9 23 66-88 74-96 (278)
380 1m7g_A Adenylylsulfate kinase; 85.4 0.43 1.5E-05 43.9 2.9 26 62-87 22-47 (211)
381 3nwj_A ATSK2; P loop, shikimat 85.2 0.59 2E-05 44.3 3.8 24 65-88 48-71 (250)
382 1e4v_A Adenylate kinase; trans 85.1 0.48 1.6E-05 43.6 3.1 23 67-89 2-24 (214)
383 1rz3_A Hypothetical protein rb 85.1 0.46 1.6E-05 43.3 3.0 22 65-86 22-43 (201)
384 2pbr_A DTMP kinase, thymidylat 85.1 0.48 1.6E-05 42.5 3.1 21 67-87 2-22 (195)
385 2xb4_A Adenylate kinase; ATP-b 85.1 0.51 1.7E-05 43.8 3.3 22 67-88 2-23 (223)
386 1c4o_A DNA nucleotide excision 85.0 2.2 7.6E-05 46.6 8.8 58 58-120 20-78 (664)
387 2pt5_A Shikimate kinase, SK; a 84.9 0.51 1.8E-05 41.3 3.1 21 67-87 2-22 (168)
388 1tq4_A IIGP1, interferon-induc 84.8 0.83 2.9E-05 46.7 5.0 24 64-87 68-91 (413)
389 2iyv_A Shikimate kinase, SK; t 84.7 0.57 2E-05 41.8 3.4 23 66-88 3-25 (184)
390 3a4m_A L-seryl-tRNA(SEC) kinas 84.7 0.5 1.7E-05 45.1 3.1 23 65-87 4-26 (260)
391 1oxx_K GLCV, glucose, ABC tran 84.7 0.31 1.1E-05 48.9 1.7 25 62-86 28-52 (353)
392 3qks_A DNA double-strand break 84.6 0.55 1.9E-05 43.0 3.2 21 65-85 23-43 (203)
393 1tf7_A KAIC; homohexamer, hexa 84.6 0.64 2.2E-05 49.4 4.2 42 61-103 277-318 (525)
394 2vhj_A Ntpase P4, P4; non- hyd 84.6 0.28 9.7E-06 48.2 1.3 27 62-88 120-146 (331)
395 2vli_A Antibiotic resistance p 84.6 0.51 1.7E-05 42.0 2.9 24 65-88 5-28 (183)
396 3cr8_A Sulfate adenylyltranfer 84.6 0.47 1.6E-05 50.6 3.1 56 32-87 328-391 (552)
397 2l8b_A Protein TRAI, DNA helic 84.5 5.4 0.00018 35.5 9.4 120 53-206 37-159 (189)
398 1via_A Shikimate kinase; struc 84.5 0.6 2E-05 41.3 3.4 22 67-88 6-27 (175)
399 3d8b_A Fidgetin-like protein 1 84.5 0.93 3.2E-05 45.5 5.1 24 65-88 117-140 (357)
400 3auy_A DNA double-strand break 84.4 0.5 1.7E-05 47.7 3.1 22 65-86 25-46 (371)
401 1ak2_A Adenylate kinase isoenz 84.3 0.71 2.4E-05 43.1 3.9 25 65-89 16-40 (233)
402 1jjv_A Dephospho-COA kinase; P 84.3 0.55 1.9E-05 42.8 3.1 20 67-86 4-23 (206)
403 3be4_A Adenylate kinase; malar 84.2 0.74 2.5E-05 42.4 4.0 25 65-89 5-29 (217)
404 1svm_A Large T antigen; AAA+ f 84.2 0.58 2E-05 47.3 3.5 26 62-87 166-191 (377)
405 2eyq_A TRCF, transcription-rep 84.2 1.1 3.6E-05 52.5 6.1 79 275-358 651-730 (1151)
406 2if2_A Dephospho-COA kinase; a 84.1 0.59 2E-05 42.5 3.2 21 67-87 3-23 (204)
407 1tue_A Replication protein E1; 84.0 0.55 1.9E-05 42.9 2.9 20 66-85 59-78 (212)
408 4tmk_A Protein (thymidylate ki 83.7 1.1 3.9E-05 41.2 5.0 23 64-86 2-24 (213)
409 1vht_A Dephospho-COA kinase; s 83.7 0.53 1.8E-05 43.4 2.7 22 65-86 4-25 (218)
410 2r2a_A Uncharacterized protein 83.6 0.93 3.2E-05 41.3 4.3 23 67-89 7-29 (199)
411 1odf_A YGR205W, hypothetical 3 83.6 0.6 2E-05 45.4 3.1 22 65-86 31-52 (290)
412 3dzd_A Transcriptional regulat 83.6 2 6.9E-05 43.2 7.2 25 63-88 150-174 (368)
413 1sq5_A Pantothenate kinase; P- 83.5 1.6 5.5E-05 42.7 6.3 25 63-87 78-102 (308)
414 3cf2_A TER ATPase, transitiona 83.4 1.7 5.7E-05 48.4 7.0 24 66-89 512-535 (806)
415 2r62_A Cell division protease 83.3 0.57 2E-05 44.7 2.9 59 26-88 7-67 (268)
416 1uf9_A TT1252 protein; P-loop, 83.0 0.69 2.3E-05 41.8 3.2 22 66-87 9-30 (203)
417 3uk6_A RUVB-like 2; hexameric 83.0 1.1 3.8E-05 44.9 5.0 24 66-89 71-94 (368)
418 3t15_A Ribulose bisphosphate c 82.8 0.74 2.5E-05 44.8 3.5 24 66-89 37-60 (293)
419 4hlc_A DTMP kinase, thymidylat 82.7 1.4 4.6E-05 40.4 5.1 37 66-104 3-39 (205)
420 3v9p_A DTMP kinase, thymidylat 82.7 0.6 2.1E-05 43.5 2.7 26 62-87 22-47 (227)
421 4a82_A Cystic fibrosis transme 82.6 0.48 1.6E-05 51.0 2.2 25 62-86 364-388 (578)
422 3oiy_A Reverse gyrase helicase 82.5 1.3 4.3E-05 45.3 5.3 79 274-358 62-144 (414)
423 1pui_A ENGB, probable GTP-bind 82.1 0.47 1.6E-05 43.2 1.7 23 63-85 24-46 (210)
424 3lv8_A DTMP kinase, thymidylat 82.1 1.4 4.7E-05 41.3 4.9 24 64-87 26-49 (236)
425 4edh_A DTMP kinase, thymidylat 82.0 0.77 2.6E-05 42.3 3.1 40 64-104 5-44 (213)
426 2p5t_B PEZT; postsegregational 82.0 0.53 1.8E-05 44.7 2.1 24 65-88 32-55 (253)
427 2npi_A Protein CLP1; CLP1-PCF1 81.9 0.65 2.2E-05 48.4 2.8 30 58-87 131-160 (460)
428 3sop_A Neuronal-specific septi 81.8 0.76 2.6E-05 44.1 3.1 22 67-88 4-25 (270)
429 3tmk_A Thymidylate kinase; pho 81.7 0.92 3.1E-05 41.9 3.5 26 64-89 4-29 (216)
430 3qkt_A DNA double-strand break 81.5 0.8 2.7E-05 45.6 3.2 21 65-85 23-43 (339)
431 2x8a_A Nuclear valosin-contain 81.5 0.77 2.6E-05 44.2 3.0 23 66-88 45-67 (274)
432 3hjn_A DTMP kinase, thymidylat 81.3 1.3 4.3E-05 40.3 4.2 36 68-104 3-38 (197)
433 2yv5_A YJEQ protein; hydrolase 81.2 1.5 5.1E-05 42.8 5.0 25 62-86 162-186 (302)
434 3b60_A Lipid A export ATP-bind 81.2 0.6 2.1E-05 50.3 2.3 25 62-86 366-390 (582)
435 1lw7_A Transcriptional regulat 81.2 0.81 2.8E-05 46.1 3.2 28 61-88 164-193 (365)
436 3pxg_A Negative regulator of g 81.1 1.2 4.1E-05 46.5 4.6 31 57-87 191-223 (468)
437 2qm8_A GTPase/ATPase; G protei 80.9 1 3.5E-05 44.8 3.7 25 63-87 53-77 (337)
438 3qf4_A ABC transporter, ATP-bi 80.9 0.6 2E-05 50.4 2.2 25 62-86 366-390 (587)
439 2rcn_A Probable GTPase ENGC; Y 80.3 1.3 4.6E-05 44.2 4.4 26 62-87 212-237 (358)
440 1ltq_A Polynucleotide kinase; 80.3 0.96 3.3E-05 43.9 3.3 22 66-87 3-24 (301)
441 3r20_A Cytidylate kinase; stru 80.0 1.3 4.4E-05 41.4 3.9 25 64-88 8-32 (233)
442 3qf4_B Uncharacterized ABC tra 79.9 0.58 2E-05 50.6 1.7 25 62-86 378-402 (598)
443 1vec_A ATP-dependent RNA helic 79.7 5.5 0.00019 35.8 8.1 76 275-358 70-151 (206)
444 2grj_A Dephospho-COA kinase; T 79.5 1.1 3.7E-05 40.6 3.1 22 66-87 13-34 (192)
445 2qag_B Septin-6, protein NEDD5 79.4 0.83 2.8E-05 46.8 2.5 29 58-86 33-63 (427)
446 1um8_A ATP-dependent CLP prote 79.2 1.1 3.9E-05 45.1 3.6 23 65-87 72-94 (376)
447 2dyk_A GTP-binding protein; GT 79.2 1.1 3.9E-05 38.3 3.1 22 67-88 3-24 (161)
448 1oix_A RAS-related protein RAB 78.9 1.1 3.7E-05 40.2 3.0 22 67-88 31-52 (191)
449 2f9l_A RAB11B, member RAS onco 78.8 1.1 3.8E-05 40.3 3.0 22 67-88 7-28 (199)
450 1yqt_A RNAse L inhibitor; ATP- 78.8 0.98 3.4E-05 48.1 3.0 26 62-87 44-69 (538)
451 2yl4_A ATP-binding cassette SU 78.4 0.65 2.2E-05 50.2 1.5 25 62-86 367-391 (595)
452 1e69_A Chromosome segregation 78.2 1 3.4E-05 44.5 2.7 21 66-86 25-45 (322)
453 2c9o_A RUVB-like 1; hexameric 78.1 2.1 7E-05 44.5 5.2 23 66-88 64-86 (456)
454 1z2a_A RAS-related protein RAB 77.9 1.3 4.4E-05 38.2 3.0 22 67-88 7-28 (168)
455 2www_A Methylmalonic aciduria 77.9 1.8 6.1E-05 43.2 4.4 24 65-88 74-97 (349)
456 2ce2_X GTPase HRAS; signaling 77.8 1.3 4.6E-05 37.8 3.1 22 67-88 5-26 (166)
457 3ake_A Cytidylate kinase; CMP 77.6 1.4 4.6E-05 40.0 3.3 21 67-87 4-24 (208)
458 2ged_A SR-beta, signal recogni 77.6 1.4 4.8E-05 39.2 3.3 24 65-88 48-71 (193)
459 1p5z_B DCK, deoxycytidine kina 77.4 1 3.5E-05 42.9 2.4 23 64-86 23-45 (263)
460 3sfz_A APAF-1, apoptotic pepti 77.4 13 0.00043 43.6 12.4 36 53-88 131-170 (1249)
461 2obl_A ESCN; ATPase, hydrolase 77.4 1.1 3.9E-05 44.6 2.8 29 60-88 66-94 (347)
462 1uj2_A Uridine-cytidine kinase 77.3 1.3 4.4E-05 41.9 3.1 21 67-87 24-44 (252)
463 4db1_A Myosin-7; S1DC, cardiac 77.3 3 0.0001 46.1 6.3 62 27-88 126-197 (783)
464 2ocp_A DGK, deoxyguanosine kin 77.3 1.3 4.3E-05 41.5 3.0 24 65-88 2-25 (241)
465 3bor_A Human initiation factor 76.8 4.6 0.00016 37.4 6.8 76 275-358 97-178 (237)
466 2f6r_A COA synthase, bifunctio 76.8 1.3 4.4E-05 42.7 3.0 21 66-86 76-96 (281)
467 2oxc_A Probable ATP-dependent 76.8 6.7 0.00023 36.1 7.9 76 274-358 90-171 (230)
468 2wji_A Ferrous iron transport 76.7 1.5 5E-05 38.2 3.0 20 67-86 5-24 (165)
469 1ky3_A GTP-binding protein YPT 76.7 1.6 5.4E-05 38.2 3.3 23 67-89 10-32 (182)
470 2wsm_A Hydrogenase expression/ 76.6 1.6 5.4E-05 40.0 3.4 26 64-89 29-54 (221)
471 3ux8_A Excinuclease ABC, A sub 76.6 0.94 3.2E-05 49.7 2.1 21 63-83 346-366 (670)
472 1u0l_A Probable GTPase ENGC; p 76.3 1.8 6.3E-05 42.1 3.9 24 63-86 167-190 (301)
473 1g8p_A Magnesium-chelatase 38 76.3 1.6 5.3E-05 43.3 3.5 24 64-87 44-67 (350)
474 3zvl_A Bifunctional polynucleo 76.2 1.6 5.3E-05 44.9 3.5 23 65-87 258-280 (416)
475 1z0j_A RAB-22, RAS-related pro 76.2 1.7 5.7E-05 37.5 3.3 23 67-89 8-30 (170)
476 1ek0_A Protein (GTP-binding pr 76.2 1.6 5.6E-05 37.5 3.3 23 67-89 5-27 (170)
477 1kao_A RAP2A; GTP-binding prot 76.0 1.7 5.8E-05 37.2 3.3 22 67-88 5-26 (167)
478 3ld9_A DTMP kinase, thymidylat 75.9 1.5 5.3E-05 40.6 3.1 24 64-87 20-43 (223)
479 1u8z_A RAS-related protein RAL 75.9 1.7 5.8E-05 37.3 3.3 22 67-88 6-27 (168)
480 2iut_A DNA translocase FTSK; n 75.7 2.7 9.2E-05 44.7 5.2 25 64-88 213-237 (574)
481 1g16_A RAS-related protein SEC 75.7 1.5 5.2E-05 37.8 2.9 22 67-88 5-26 (170)
482 3euj_A Chromosome partition pr 75.7 1.3 4.6E-05 46.1 2.9 22 66-87 30-51 (483)
483 1q3t_A Cytidylate kinase; nucl 75.7 1.8 6.2E-05 40.3 3.6 24 64-87 15-38 (236)
484 2erx_A GTP-binding protein DI- 75.6 1.6 5.6E-05 37.6 3.1 21 67-87 5-25 (172)
485 2dpy_A FLII, flagellum-specifi 75.5 1.4 4.8E-05 45.5 3.0 29 60-88 152-180 (438)
486 1g41_A Heat shock protein HSLU 75.5 2.4 8.3E-05 43.6 4.7 23 66-88 51-73 (444)
487 3j16_B RLI1P; ribosome recycli 75.5 1.4 4.7E-05 47.6 3.0 26 62-87 100-125 (608)
488 1w1w_A Structural maintenance 75.5 1.7 5.9E-05 44.7 3.7 24 64-87 25-48 (430)
489 1yqt_A RNAse L inhibitor; ATP- 75.3 1.4 4.7E-05 46.9 2.9 25 63-87 310-334 (538)
490 3bk7_A ABC transporter ATP-bin 75.2 1.4 4.7E-05 47.6 2.9 25 63-87 380-404 (607)
491 3ozx_A RNAse L inhibitor; ATP 75.2 1.3 4.5E-05 47.0 2.7 25 62-86 291-315 (538)
492 1svi_A GTP-binding protein YSX 75.2 1.6 5.4E-05 38.9 2.9 23 65-87 23-45 (195)
493 3pqc_A Probable GTP-binding pr 75.2 1.5 5E-05 39.0 2.7 23 66-88 24-46 (195)
494 2lkc_A Translation initiation 75.2 2.1 7.1E-05 37.3 3.7 24 65-88 8-31 (178)
495 3fe2_A Probable ATP-dependent 75.1 3.9 0.00013 38.1 5.8 75 275-358 101-181 (242)
496 1c1y_A RAS-related protein RAP 75.1 1.7 5.8E-05 37.4 3.0 21 67-87 5-25 (167)
497 1wms_A RAB-9, RAB9, RAS-relate 75.1 1.8 6.3E-05 37.6 3.3 22 67-88 9-30 (177)
498 3bk7_A ABC transporter ATP-bin 75.0 1.4 4.7E-05 47.6 2.8 25 62-86 114-138 (607)
499 1z08_A RAS-related protein RAB 75.0 1.7 5.9E-05 37.5 3.1 22 67-88 8-29 (170)
500 2wjg_A FEOB, ferrous iron tran 74.8 1.8 6.3E-05 38.2 3.3 21 67-87 9-29 (188)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.7e-90 Score=777.80 Aligned_cols=537 Identities=48% Similarity=0.789 Sum_probs=491.1
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCC-CeEEEEeCch
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG-GRVIACTQPR 104 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~-~~~I~v~~~r 104 (584)
..+|.++++++.+. ++.+.|..+|++.++++|+.++.++++++++||||||||+++|+++.......+ +..+++++|+
T Consensus 71 ~~~f~~~~l~~~~~-~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~ 149 (773)
T 2xau_A 71 INPFTGREFTPKYV-DILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149 (773)
T ss_dssp BCTTTCSBCCHHHH-HHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESC
T ss_pred CCCccccCCCHHHH-HHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCch
Confidence 45699999998765 455667799999999999999999999999999999999999999877654331 3445555566
Q ss_pred HHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHH
Q 007931 105 RLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILL 184 (584)
Q Consensus 105 ~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~ 184 (584)
+.++.+++++++++++..++..+||.++++..... .++|+++|+|++++.+..+..+.++++|||||+|+|+++.+.+.
T Consensus 150 r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~-~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~ 228 (773)
T 2xau_A 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSN-KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILM 228 (773)
T ss_dssp HHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCT-TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhheecceeccccccCC-CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHH
Confidence 66677888899999999999999999888777666 89999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHH
Q 007931 185 GLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAV 264 (584)
Q Consensus 185 ~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 264 (584)
.+++.+...+++.++|+||||++.+.+.+||+..+ ++.++++.+|++++|...+..++.+..+
T Consensus 229 ~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~-----------------vi~v~gr~~pv~~~~~~~~~~~~~~~~l 291 (773)
T 2xau_A 229 GLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP-----------------LLAVPGRTYPVELYYTPEFQRDYLDSAI 291 (773)
T ss_dssp HHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCC-----------------EEECCCCCCCEEEECCSSCCSCHHHHHH
T ss_pred HHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCC-----------------cccccCcccceEEEEecCCchhHHHHHH
Confidence 99999988888999999999999999999998766 8899999999999999988888988888
Q ss_pred HHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhc--cCCCCCeEEEEecCCCCHHHHhcccCCCC-----CCCcE
Q 007931 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS--KKNSSGLIILPLYSGLSRAEQEQVFSPTP-----RGKRK 337 (584)
Q Consensus 265 ~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~--~~~~~~~~v~~lh~~l~~~~r~~i~~~~~-----~g~~~ 337 (584)
..+..++....++++||||+++++++.+++.|.+....+ .....++.+.++||+|++++|.++++.|+ +|.++
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 888888887788999999999999999999998744322 11234789999999999999999999999 99999
Q ss_pred EEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhhhCCC
Q 007931 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPA 417 (584)
Q Consensus 338 vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~ 417 (584)
||||||++|+|||||+|++|||+|+.|.+.||+..+++.|.+.|+|.++|.||+|||||.++|.||+||++.++...+.+
T Consensus 372 VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~ 451 (773)
T 2xau_A 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIE 451 (773)
T ss_dssp EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCS
T ss_pred EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999655999
Q ss_pred CCCCcccccchhHHHHHHHhcCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHH
Q 007931 418 EGIPEMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMI 497 (584)
Q Consensus 418 ~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l 497 (584)
+..|||++.+|.+++|+++.+|++++..|+|++||+.+.+..|++.|..+|+||++|++| ++|+.|+++|++|++||||
T Consensus 452 ~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT-~lG~~~a~~pl~p~~~~~l 530 (773)
T 2xau_A 452 QSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT-PLGRLASQFPLDPMLAVML 530 (773)
T ss_dssp SCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBC-HHHHHHTTSSSCHHHHHHH
T ss_pred cCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcC-hhhhhhccccCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HhhcccCChHHHHHHHHhhccCcccccCcccHHHHHHHHhhccCCCCCHHHHHHHHHHHHHcC---Cc-HHHHHHhCCCH
Q 007931 498 LSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSC---KS-SHWCHKNFINY 573 (584)
Q Consensus 498 ~~~~~~~c~~~~l~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~---~~-~~~c~~~~l~~ 573 (584)
+.|..++|.+++++|+|+|+++++|..|.+.+++++.++.+|....|||++++|+|++|.+.. .. .+||++||||+
T Consensus 531 ~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~ 610 (773)
T 2xau_A 531 IGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNY 610 (773)
T ss_dssp HHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCH
T ss_pred HhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999998999999999999997654 44 78999999999
Q ss_pred HHHHHHHHh
Q 007931 574 HAMVRNLIW 582 (584)
Q Consensus 574 ~~~~~a~~~ 582 (584)
++|++|.+.
T Consensus 611 ~~l~~~~~~ 619 (773)
T 2xau_A 611 RSLSAADNI 619 (773)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998653
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-56 Score=504.23 Aligned_cols=517 Identities=17% Similarity=0.128 Sum_probs=359.3
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHH-HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchH
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~-l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~ 105 (584)
.+|.++++++.....+.+ +.--..+.+|.+++.. +.++++++++||||||||+++++.+++.....++++++++|.|+
T Consensus 8 ~~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~ 86 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRA 86 (715)
T ss_dssp CBGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHH
T ss_pred CcHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHH
Confidence 569999999876655543 2222567888888887 78899999999999999999998888664435667788887777
Q ss_pred HHHHHHHHHH--HHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhH
Q 007931 106 LAVQAVASRV--AEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDI 182 (584)
Q Consensus 106 la~~~~~~~~--~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ 182 (584)
++.+. ++++ ...+|..++..+|+..+.+... . .++|+|+|||++.+.+..++. ++++++|||||+|+.+ +.+
T Consensus 87 La~q~-~~~~~~~~~~g~~v~~~~G~~~~~~~~~-~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~~~- 161 (715)
T 2va8_A 87 LTNEK-YLTFKDWELIGFKVAMTSGDYDTDDAWL-K-NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-DPE- 161 (715)
T ss_dssp HHHHH-HHHHGGGGGGTCCEEECCSCSSSCCGGG-G-GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-CTT-
T ss_pred HHHHH-HHHHHHhhcCCCEEEEEeCCCCCchhhc-C-CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC-Ccc-
Confidence 77764 4444 2345788888888776655433 2 689999999999999888776 8999999999999744 111
Q ss_pred HHHHHHHHHHhcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccce-------------
Q 007931 183 LLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ------------- 248 (584)
Q Consensus 183 l~~~l~~~~~~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------------- 248 (584)
....++.+....+++|+|+||||+ +.+.+++|++.. .+..+++++|++
T Consensus 162 ~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~~~------------------~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 162 RGPVVESVTIRAKRRNLLALSATISNYKQIAKWLGAE------------------PVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp THHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHTCE------------------EEECCCCSSCEEEEEEEECSSTTEE
T ss_pred cchHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhCCC------------------ccCCCCCCCCceEEEEecCCcccce
Confidence 122223322222289999999999 699999999753 233333333333
Q ss_pred -EEecCCCcchH--HHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhh-cc---------------CC---
Q 007931 249 -IHYVEEPVSDY--VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART-SK---------------KN--- 306 (584)
Q Consensus 249 -~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~-~~---------------~~--- 306 (584)
..|.......+ .+.....+.... ..++++||||+++++++.+++.|.+.... .. ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred eeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 22222111110 122334444443 35689999999999999999999875321 00 00
Q ss_pred --------CCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccce
Q 007931 307 --------SSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLV 378 (584)
Q Consensus 307 --------~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~ 378 (584)
.....+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++ ...||++.+..
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~--- 374 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY--- 374 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-------------
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---
Confidence 001358999999999999999999999999999999999999999999999986 45677654332
Q ss_pred eeeccHHhHHHhccccCCCC---CcEEEEccChHH-HhhhC--CCCCCCcccccchhH------HHHHHHhcCCC----C
Q 007931 379 VAPISKASARQRAGRAGRVR---PGKCYRLYTEEY-FVKEI--PAEGIPEMQRSNLVS------CVIQLKALGID----N 442 (584)
Q Consensus 379 ~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~~-~~~~~--~~~~~pei~r~~l~~------~~L~l~~~~~~----~ 442 (584)
..|.|.++|.||+|||||.+ +|.||+++++.. +...+ .....||+.++++.+ .++.+...|.- +
T Consensus 375 ~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~ 454 (715)
T 2va8_A 375 YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQ 454 (715)
T ss_dssp ----CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHH
T ss_pred CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHH
Confidence 44999999999999999985 899999998655 22211 113568888877655 67777777632 2
Q ss_pred ccC---CCCCC-CCCHHHHHHHHHHHHHcCCccCCC---CCCHHHHHHhccCCCChhhhHHHHhhccc---CChHHHHHH
Q 007931 443 ILG---FDWPA-SPPPEAMIRALEVLYSLGVLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNEL---GCSEEIITI 512 (584)
Q Consensus 443 ~~~---~~~~~-~p~~~~~~~al~~L~~~g~i~~~~---~lT~~lG~~~~~~pl~p~~~~~l~~~~~~---~c~~~~l~i 512 (584)
+.. ..|+. +|+...+..|++.|..+|+|+.++ .+| ++|+.|+.+|++|.++++++.+... .|..+++.|
T Consensus 455 ~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 533 (715)
T 2va8_A 455 LENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALT-NFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHL 533 (715)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEEC-HHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeC-hHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHH
Confidence 222 24443 455667999999999999998764 799 7999999999999999999999887 799999998
Q ss_pred HHhhc-cCcccccCcccHHHHHHHHhh-----ccC-CCC--------CHHHHHHHHHHHHHcCCcHHHHHHhCCCHHHHH
Q 007931 513 SAVLS-IQSIWVSGRGAQKELDEAKLR-----FAA-AEG--------DHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMV 577 (584)
Q Consensus 513 ~a~l~-~~~~f~~~~~~~~~~~~~~~~-----~~~-~~~--------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~~~ 577 (584)
+|+.+ +++++.++.+.. +......+ +.. +-. .|+-..-+.++|.+...-..+|.++++....+.
T Consensus 534 i~~~~e~~~~~~r~~e~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~ 612 (715)
T 2va8_A 534 LAFTPDGPLVSVGRNEEE-ELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLR 612 (715)
T ss_dssp HHHSTTSCCCCCCHHHHH-HHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHH
T ss_pred hhcCcccccCccChHHHH-HHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHH
Confidence 88776 467777664322 22221111 100 000 244455566788777666778998888655554
Q ss_pred H
Q 007931 578 R 578 (584)
Q Consensus 578 ~ 578 (584)
.
T Consensus 613 ~ 613 (715)
T 2va8_A 613 N 613 (715)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.1e-55 Score=496.69 Aligned_cols=511 Identities=17% Similarity=0.142 Sum_probs=370.9
Q ss_pred ccCCCC--CCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchH
Q 007931 28 SLSSAS--SIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (584)
Q Consensus 28 ~~~~l~--~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~ 105 (584)
+|.+++ +++.....+.+ ..--..+.+|.+++..+.++++++++||||||||+++++.+++... .++++++++|.++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~ 79 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRA 79 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHH
T ss_pred chhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHH
Confidence 466777 66655444433 2222567888889999999999999999999999998888876532 4667888888888
Q ss_pred HHHHHHHHHHH--HHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCcc--ch
Q 007931 106 LAVQAVASRVA--EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--ST 180 (584)
Q Consensus 106 la~~~~~~~~~--~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~--~~ 180 (584)
++.+...+ +. ..+|..++..+|+..+.+... . .++|+|+|||++.+.+..++. ++++++|||||+|+.+- ..
T Consensus 80 La~q~~~~-~~~~~~~g~~v~~~~G~~~~~~~~~-~-~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~ 156 (702)
T 2p6r_A 80 LAGEKYES-FKKWEKIGLRIGISTGDYESRDEHL-G-DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRG 156 (702)
T ss_dssp HHHHHHHH-HTTTTTTTCCEEEECSSCBCCSSCS-T-TCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTH
T ss_pred HHHHHHHH-HHHHHhcCCEEEEEeCCCCcchhhc-c-CCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcc
Confidence 88764443 32 235778888888776655433 3 699999999999999888776 89999999999996221 22
Q ss_pred hHHHHHHHHHHHhcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchH
Q 007931 181 DILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDY 259 (584)
Q Consensus 181 d~l~~~l~~~~~~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 259 (584)
..+..++.++...++++|+|+||||+ +.+.+++|++.. .+..+++++|++..+.......+
T Consensus 157 ~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~~------------------~~~~~~r~~~l~~~~~~~~~~~~ 218 (702)
T 2p6r_A 157 ATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDAD------------------YYVSDWRPVPLVEGVLCEGTLEL 218 (702)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCE------------------EEECCCCSSCEEEEEECSSEEEE
T ss_pred cHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhCCC------------------cccCCCCCccceEEEeeCCeeec
Confidence 23344444455567789999999999 589999999743 45555666665554332211000
Q ss_pred HH---------HHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCC---------------------CC
Q 007931 260 VQ---------AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNS---------------------SG 309 (584)
Q Consensus 260 ~~---------~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~---------------------~~ 309 (584)
.+ .....+.... ..++++||||+++++++.+++.|.+......... .+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 296 (702)
T 2p6r_A 219 FDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVR 296 (702)
T ss_dssp EETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHH
T ss_pred cCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHh
Confidence 00 0222233333 2568899999999999999999987643211000 01
Q ss_pred eEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHH
Q 007931 310 LIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQ 389 (584)
Q Consensus 310 ~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~Q 389 (584)
..+.++||+|++++|..+++.|++|.++|||||+++++|||+|++++||++ ...|| +. ..|.|.++|.|
T Consensus 297 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Q 365 (702)
T 2p6r_A 297 KGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQ 365 (702)
T ss_dssp TTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHH
T ss_pred cCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHH
Confidence 358889999999999999999999999999999999999999999999985 45677 11 34999999999
Q ss_pred hccccCCCC---CcEEEEccChHHHhhhCC--CCCCCcccccchhH------HHHHHHhcCCC-C---ccCC---CCC--
Q 007931 390 RAGRAGRVR---PGKCYRLYTEEYFVKEIP--AEGIPEMQRSNLVS------CVIQLKALGID-N---ILGF---DWP-- 449 (584)
Q Consensus 390 R~GRaGR~~---~G~~~~l~~~~~~~~~~~--~~~~pei~r~~l~~------~~L~l~~~~~~-~---~~~~---~~~-- 449 (584)
|+|||||.+ +|.||+++++..++..+. ....||+.+++|.+ .++.+...|.. + +..| .|+
T Consensus 366 r~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~ 445 (702)
T 2p6r_A 366 MAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFK 445 (702)
T ss_dssp HHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHH
T ss_pred HhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHH
Confidence 999999985 899999999877554221 24568888877665 66777777632 2 1111 333
Q ss_pred --CCCCHHHHHHHHHHHHHcCCccCC--CCCCHHHHHHhccCCCChhhhHHHHhhccc--CChHHHHHHHHhhcc-Cccc
Q 007931 450 --ASPPPEAMIRALEVLYSLGVLDDD--AKLTSPTGFQVAEIPLEPMISKMILSSNEL--GCSEEIITISAVLSI-QSIW 522 (584)
Q Consensus 450 --~~p~~~~~~~al~~L~~~g~i~~~--~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~--~c~~~~l~i~a~l~~-~~~f 522 (584)
++|..+.+..|++.|...|+|+.+ +.+| ++|+.++.+|++|.++++++.+... .|..+++.|+|+.+. .+++
T Consensus 446 ~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~ 524 (702)
T 2p6r_A 446 QNEISLSYELERVVRQLENWGMVVEAAHLAPT-KLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLT 524 (702)
T ss_dssp HHCCCCHHHHHHHHHHHHHTTSEEESSSEEEC-HHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCC
T ss_pred hhhHHHHHHHHHHHHHHHHCcCeeECCeeccC-hHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCC
Confidence 368889999999999999999976 7899 7999999999999999999999988 899999999888775 5688
Q ss_pred ccCcccHHHHHHHH----hhc-cCC--CC-------CHHHHHHHHHHHHHcCCcHHHHHHhCCCHHHHH
Q 007931 523 VSGRGAQKELDEAK----LRF-AAA--EG-------DHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMV 577 (584)
Q Consensus 523 ~~~~~~~~~~~~~~----~~~-~~~--~~-------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~~~ 577 (584)
.++.+ ++....- ..+ ..+ .. .|+-..-+.++|.+...-...|.++++...-++
T Consensus 525 ~r~~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~ 591 (702)
T 2p6r_A 525 VRKTD--SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLR 591 (702)
T ss_dssp CCTTT--HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHH
T ss_pred CCCch--HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHH
Confidence 87765 2222211 122 111 11 355556667888876666778888888554443
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.6e-53 Score=480.37 Aligned_cols=459 Identities=17% Similarity=0.139 Sum_probs=331.0
Q ss_pred ccCCCCCCccchhhHHHHhcCCCchHHHHHHHHH-HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHH
Q 007931 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (584)
Q Consensus 28 ~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~-l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~l 106 (584)
+|.++++++.....+.+ +.-...+.+|.+++.. +.++++++++||||||||+++++.+++.....+++++|++|.+++
T Consensus 2 ~f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raL 80 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKAL 80 (720)
T ss_dssp BGGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGG
T ss_pred cHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 58999999877655544 4444778899999987 889999999999999999888877775544345678888888887
Q ss_pred HHHHHHHHHH--HHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCC-----cCcc
Q 007931 107 AVQAVASRVA--EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH-----ERSI 178 (584)
Q Consensus 107 a~~~~~~~~~--~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~H-----er~~ 178 (584)
+.+ +++++. ..+|..++..+|.. ..+..... .++|+|+||+++...+..++. +.++++|||||+| +|+.
T Consensus 81 a~q-~~~~~~~l~~~g~~v~~~~G~~-~~~~~~~~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~ 157 (720)
T 2zj8_A 81 AEE-KFQEFQDWEKIGLRVAMATGDY-DSKDEWLG-KYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGA 157 (720)
T ss_dssp HHH-HHHHTGGGGGGTCCEEEECSCS-SCCCGGGG-GCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHH
T ss_pred HHH-HHHHHHHHHhcCCEEEEecCCC-CccccccC-CCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccH
Confidence 765 444443 23577787777732 22222223 689999999999998877765 8999999999999 4444
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEE-------
Q 007931 179 STDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIH------- 250 (584)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------- 250 (584)
..+.++..++ .++|+|+||||+ +.+.+++|++... +..+.++.|++..
T Consensus 158 ~~~~ll~~l~------~~~~ii~lSATl~n~~~~~~~l~~~~------------------~~~~~rp~~l~~~~~~~~~~ 213 (720)
T 2zj8_A 158 TLEVILAHML------GKAQIIGLSATIGNPEELAEWLNAEL------------------IVSDWRPVKLRRGVFYQGFV 213 (720)
T ss_dssp HHHHHHHHHB------TTBEEEEEECCCSCHHHHHHHTTEEE------------------EECCCCSSEEEEEEEETTEE
T ss_pred HHHHHHHHhh------cCCeEEEEcCCcCCHHHHHHHhCCcc------------------cCCCCCCCcceEEEEeCCee
Confidence 3333333222 389999999999 8899999997542 2333333333322
Q ss_pred -ecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccC------------------------
Q 007931 251 -YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK------------------------ 305 (584)
Q Consensus 251 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~------------------------ 305 (584)
+..... .........+.... ..++++||||+++++++.++..|.+.......
T Consensus 214 ~~~~~~~-~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 290 (720)
T 2zj8_A 214 TWEDGSI-DRFSSWEELVYDAI--RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLA 290 (720)
T ss_dssp EETTSCE-EECSSTTHHHHHHH--HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHH
T ss_pred eccccch-hhhhHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHH
Confidence 221100 00011122222322 24688999999999999999999876432100
Q ss_pred CCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHH
Q 007931 306 NSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKA 385 (584)
Q Consensus 306 ~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~ 385 (584)
......+.++||+|++++|..+++.|++|.++|||||+++++|||+|++++||+.+ ..|| ..|. .|.|.+
T Consensus 291 ~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g~-----~~~s~~ 360 (720)
T 2zj8_A 291 KAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFGM-----ERIPII 360 (720)
T ss_dssp HHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSSC-----EECCHH
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCCC-----ccCCHH
Confidence 00012499999999999999999999999999999999999999999999999854 3455 2221 389999
Q ss_pred hHHHhccccCCCC---CcEEEEccChHHHhh---hCCCCCCCccccc-----chhHHHHHHHhcCCC-C---ccC---CC
Q 007931 386 SARQRAGRAGRVR---PGKCYRLYTEEYFVK---EIPAEGIPEMQRS-----NLVSCVIQLKALGID-N---ILG---FD 447 (584)
Q Consensus 386 ~~~QR~GRaGR~~---~G~~~~l~~~~~~~~---~~~~~~~pei~r~-----~l~~~~L~l~~~~~~-~---~~~---~~ 447 (584)
+|.||+|||||.+ +|.||.++++...+. .+.....+++... .|...++.+...|.. + +.. +.
T Consensus 361 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~ 440 (720)
T 2zj8_A 361 EVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNT 440 (720)
T ss_dssp HHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTS
T ss_pred HHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999984 799999998665321 1333344444333 466667777766632 1 111 23
Q ss_pred CC------CCCCHHHHHHHHHHHHHcCCcc-CCC---CCCHHHHHHhccCCCChhhhHHHHhhccc----CChHHHHHHH
Q 007931 448 WP------ASPPPEAMIRALEVLYSLGVLD-DDA---KLTSPTGFQVAEIPLEPMISKMILSSNEL----GCSEEIITIS 513 (584)
Q Consensus 448 ~~------~~p~~~~~~~al~~L~~~g~i~-~~~---~lT~~lG~~~~~~pl~p~~~~~l~~~~~~----~c~~~~l~i~ 513 (584)
|+ +++..+.+..+++.|...|+|+ .++ .+| ++|+.|+.+|++|..+++++.+... .|..+++.|+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 519 (720)
T 2zj8_A 441 FYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPL-SLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLI 519 (720)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEEC-HHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred hHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeC-hHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHh
Confidence 32 2333468999999999999998 655 689 7999999999999999999999887 8999999999
Q ss_pred Hhhcc-CcccccCccc
Q 007931 514 AVLSI-QSIWVSGRGA 528 (584)
Q Consensus 514 a~l~~-~~~f~~~~~~ 528 (584)
|+++. +++|.++.+.
T Consensus 520 ~~~~e~~~i~~r~~e~ 535 (720)
T 2zj8_A 520 SLTPDITPFNYSKREF 535 (720)
T ss_dssp HTSTTCCCCCCCHHHH
T ss_pred ccCccccccccCHHHH
Confidence 99885 6788876543
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-41 Score=405.11 Aligned_cols=462 Identities=15% Similarity=0.133 Sum_probs=301.1
Q ss_pred ccchhhHHHHhcCCCchHHHHHHHHHH-hcCCEEEEEcCCCChHHHHHHHHHHhcCcc-CCCeEEEEeCchHHHHHHHHH
Q 007931 36 GYGYASIEKQRQRLPVYKYRTAILYLV-ETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVAS 113 (584)
Q Consensus 36 ~~~~~~l~~~~~~lP~~~~~~~il~~l-~~~~~viv~a~TGsGKT~~ip~~l~~~~~~-~~~~~I~v~~~r~la~~~~~~ 113 (584)
+..|.++.+.+... ..+.|.+++..+ ..+++++|+||||||||+.....++..... +++++||++|+|+|+.|....
T Consensus 913 ~~~~e~l~~~~f~~-fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~ 991 (1724)
T 4f92_B 913 NSAFESLYQDKFPF-FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMD 991 (1724)
T ss_dssp CHHHHTTTTTTCSB-CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHH
Confidence 44455554444444 345666666666 677899999999999997666555544322 456799999999999875543
Q ss_pred H---HHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccC---CCCCCCcEEEEeCCCc----CccchhHH
Q 007931 114 R---VAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD---PLLTKYSVIMVDEAHE----RSISTDIL 183 (584)
Q Consensus 114 ~---~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~---~~l~~~~~iIiDE~He----r~~~~d~l 183 (584)
. +....|..++..+|... .+..... .++|+|+|||++...+... ..++++++||+||+|. |+...+..
T Consensus 992 ~~~~f~~~~g~~V~~ltGd~~-~~~~~~~-~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~i 1069 (1724)
T 4f92_B 992 WYEKFQDRLNKKVVLLTGETS-TDLKLLG-KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVI 1069 (1724)
T ss_dssp HHHHHTTTSCCCEEECCSCHH-HHHHHHH-HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHH
T ss_pred HHHHhchhcCCEEEEEECCCC-cchhhcC-CCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHH
Confidence 2 33344566665555221 1111112 5799999999987666432 2378999999999993 33322333
Q ss_pred HHHHHHHHH-hcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC--ccccceEEecCCCcchH
Q 007931 184 LGLLKKIQR-CRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFNVQIHYVEEPVSDY 259 (584)
Q Consensus 184 ~~~l~~~~~-~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~ 259 (584)
+..++.+.. ..+++|+|+||||+ |++++++|++..... ...+.. |+.|.+.+.........
T Consensus 1070 l~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~---------------~~~~~~~~RPvpL~~~i~~~~~~~~ 1134 (1724)
T 4f92_B 1070 CSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATS---------------TFNFHPNVRPVPLELHIQGFNISHT 1134 (1724)
T ss_dssp HHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTT---------------EEECCGGGCSSCEEEEEEEECCCSH
T ss_pred HHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCC---------------eEEeCCCCCCCCeEEEEEeccCCCc
Confidence 333333332 45789999999999 999999999875421 233332 33333333222111111
Q ss_pred HH---HH-HHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCC-------------------------CCCe
Q 007931 260 VQ---AA-VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKN-------------------------SSGL 310 (584)
Q Consensus 260 ~~---~~-~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~-------------------------~~~~ 310 (584)
.. .. ......+......+++||||+++..++.++..|.......... ....
T Consensus 1135 ~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~ 1214 (1724)
T 4f92_B 1135 QTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1214 (1724)
T ss_dssp HHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHT
T ss_pred hhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhC
Confidence 11 11 1112223344567889999999999999998886654321100 0123
Q ss_pred EEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHh
Q 007931 311 IILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQR 390 (584)
Q Consensus 311 ~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR 390 (584)
.|++|||||++++|..+++.|++|.++|||||+++++|||+|++.+||.. ...||...+. ..|.+..+|.||
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~----~~~~dg~~~~----~~~~s~~~~~Qm 1286 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD----TQYYNGKIHA----YVDYPIYDVLQM 1286 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEEC----SEEEETTTTE----EEECCHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEec----CccccCcccc----cCCCCHHHHHHh
Confidence 59999999999999999999999999999999999999999999999964 3457765442 238899999999
Q ss_pred ccccCCC---CCcEEEEccChH---HHhhhCCCCCCC--cccccchhHHHHHHHhcCC-CCc------cCCCC-------
Q 007931 391 AGRAGRV---RPGKCYRLYTEE---YFVKEIPAEGIP--EMQRSNLVSCVIQLKALGI-DNI------LGFDW------- 448 (584)
Q Consensus 391 ~GRaGR~---~~G~~~~l~~~~---~~~~~~~~~~~p--ei~r~~l~~~~L~l~~~~~-~~~------~~~~~------- 448 (584)
+|||||. ..|.|+.++.+. .|.. +...+.| .-+...+.+.++.....|. .+. ....|
T Consensus 1287 ~GRAGR~g~d~~G~avll~~~~~~~~~~~-ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~ 1365 (1724)
T 4f92_B 1287 VGHANRPLQDDEGRCVIMCQGSKKDFFKK-FLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQ 1365 (1724)
T ss_dssp HTTBCCTTTCSCEEEEEEEEGGGHHHHHH-HTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHH
T ss_pred hccccCCCCCCceEEEEEecchHHHHHHH-HhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhc
Confidence 9999998 479999998754 3333 2222222 1122345555555555442 110 00011
Q ss_pred ------CCCC--------CHHHHHHHHHHHHHcCCcc--CCC--CCCHHHHHHhccCCCChhhhHHHHhhcccCC-hHHH
Q 007931 449 ------PASP--------PPEAMIRALEVLYSLGVLD--DDA--KLTSPTGFQVAEIPLEPMISKMILSSNELGC-SEEI 509 (584)
Q Consensus 449 ------~~~p--------~~~~~~~al~~L~~~g~i~--~~~--~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c-~~~~ 509 (584)
+... ..+.++.+++.|.+.|+|. +++ ..| ++|++++.++++|..++++..+...++ ..++
T Consensus 1366 nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T-~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~ 1444 (1724)
T 4f92_B 1366 NPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPL-NLGMIAAYYYINYTTIELFSMSLNAKTKVRGL 1444 (1724)
T ss_dssp SGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEEC-HHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHH
T ss_pred CcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeec-HHHHHHHHHCCCHHHHHHHHHhccccCCHHHH
Confidence 1111 2345678999999999995 444 459 799999999999999999998877665 4556
Q ss_pred HHHHHhhcc-CcccccC
Q 007931 510 ITISAVLSI-QSIWVSG 525 (584)
Q Consensus 510 l~i~a~l~~-~~~f~~~ 525 (584)
+.+++..+. .++..+.
T Consensus 1445 L~il~~a~ef~~i~~R~ 1461 (1724)
T 4f92_B 1445 IEIISNAAEYENIPIRH 1461 (1724)
T ss_dssp HHHHHTSGGGTTCCCCT
T ss_pred HHHhcCCcccccccccc
Confidence 666554332 3444443
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.7e-42 Score=364.12 Aligned_cols=338 Identities=16% Similarity=0.206 Sum_probs=230.6
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCcc--CCCeEEEEeCc
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQP 103 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~--~~~~~I~v~~~ 103 (584)
..+|.++++++.....+.+ ..-.+.+.+|.+++..+.+++++++++|||||||+++...+++.... .+.++++++|+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hcCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 3568999999998877765 44556777888888888889999999999999997766666654332 35678999999
Q ss_pred hHHHHHHHHHHHHH---HhCCcceeEEeeEe---eccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcC
Q 007931 104 RRLAVQAVASRVAE---EMGVKVGEEVGYTI---RFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (584)
Q Consensus 104 r~la~~~~~~~~~~---~~~~~vg~~vg~~~---~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her 176 (584)
+.|+.| +.+.+.+ ..+..++..+|... ..+..... .++|+|+||+.|++.+..+.. +.++++||+||||+
T Consensus 118 ~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~- 194 (414)
T 3eiq_A 118 RELAQQ-IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME-APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE- 194 (414)
T ss_dssp HHHHHH-HHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTT-CCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-
T ss_pred HHHHHH-HHHHHHHHhcccCceEEEEECCcchHHHHHHHhcC-CCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH-
Confidence 988875 3333333 33444443333211 11111113 689999999999999877665 88899999999994
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEecccChHHH--HHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccceEEe
Q 007931 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEAKSM--SAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHY 251 (584)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~ 251 (584)
..+.++...+...+....++.++|+||||++.+.. ...+...+. .+.+.... ..+...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 258 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPI----------------RILVKKEELTLEGIRQFY 258 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCE----------------EECCCCCCCCTTSCCEEE
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCE----------------EEEecCCccCCCCceEEE
Confidence 33334444444445556688999999999955432 222211110 11111111 1122223
Q ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCC
Q 007931 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (584)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~ 331 (584)
......+. ....+..+......+++||||+++++++.+++.|.+. ++.+..+||++++++|.++++.|
T Consensus 259 ~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f 326 (414)
T 3eiq_A 259 INVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREF 326 (414)
T ss_dssp EECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHH
T ss_pred EEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHH
Confidence 22222221 2344455556667789999999999999999999765 78899999999999999999999
Q ss_pred CCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHH
Q 007931 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (584)
Q Consensus 332 ~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (584)
++|..+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. ++|.||.++++.+
T Consensus 327 ~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 327 RSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEED 388 (414)
T ss_dssp SCC---CEEECSSCC--CCGGGCSCEEESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTH
T ss_pred HcCCCcEEEECCccccCCCccCCCEEEEeCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHH
Confidence 9999999999999999999999999999887 88999999999999999 7899999999766
Q ss_pred Hhh
Q 007931 411 FVK 413 (584)
Q Consensus 411 ~~~ 413 (584)
...
T Consensus 389 ~~~ 391 (414)
T 3eiq_A 389 KRT 391 (414)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.1e-40 Score=398.97 Aligned_cols=441 Identities=17% Similarity=0.154 Sum_probs=291.8
Q ss_pred hHHHHHHHH-HHhcCCEEEEEcCCCChHHHHHHHHHHhcCc----------cCCCeEEEEeCchHHHHHHHHHH--HHHH
Q 007931 52 YKYRTAILY-LVETHATTIIVGETGSGKTTQIPQYLKEAGW----------ADGGRVIACTQPRRLAVQAVASR--VAEE 118 (584)
Q Consensus 52 ~~~~~~il~-~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~----------~~~~~~I~v~~~r~la~~~~~~~--~~~~ 118 (584)
...|.+++. ++.++++++|+||||||||..+...++.... ..+.++||++|.|+|+.+..... ....
T Consensus 81 n~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~ 160 (1724)
T 4f92_B 81 NRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT 160 (1724)
T ss_dssp CHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 345655555 5678999999999999999655444433211 23567899999999999855443 2334
Q ss_pred hCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCC---CCCCCcEEEEeCCC----cCccchhHHHHHHHH-H
Q 007931 119 MGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAH----ERSISTDILLGLLKK-I 190 (584)
Q Consensus 119 ~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~---~l~~~~~iIiDE~H----er~~~~d~l~~~l~~-~ 190 (584)
.|..++..+|..... .... ..++|+|+||+++...+.... .++++++|||||+| +|+...+.++..+.+ .
T Consensus 161 ~gi~V~~~tGd~~~~-~~~~-~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~ 238 (1724)
T 4f92_B 161 YGITVAELTGDHQLC-KEEI-SATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNI 238 (1724)
T ss_dssp TTCCEEECCSSCSSC-CTTG-GGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCC-cccc-CCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHH
Confidence 577777777743211 1112 268999999999865544332 37899999999999 555433333333222 2
Q ss_pred HHhcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc--cccceEEecCCCcchH---HHHHH
Q 007931 191 QRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR--GFNVQIHYVEEPVSDY---VQAAV 264 (584)
Q Consensus 191 ~~~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~---~~~~~ 264 (584)
....+++|+|+||||+ |.+++++|++..+.. ....+... +.|.+.++........ .....
T Consensus 239 ~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~--------------~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~ 304 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPNYEDVATFLRVDPAK--------------GLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMN 304 (1724)
T ss_dssp HHHTCCCEEEEEECSCTTHHHHHHHTTCCHHH--------------HEEECCGGGCSSCEEEECCEECCCCHHHHHHHHH
T ss_pred HhCCCCCcEEEEecccCCHHHHHHHhCCCCCC--------------CeEEECCCCccCccEEEEeccCCcchhhhhHHHH
Confidence 3456789999999999 999999999864311 02233333 3333333332222111 11111
Q ss_pred HHHHH-HHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccC----------------------------CCCCeEEEEe
Q 007931 265 STVLL-IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK----------------------------NSSGLIILPL 315 (584)
Q Consensus 265 ~~i~~-~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~----------------------------~~~~~~v~~l 315 (584)
..+.. +.....++++||||++++.++.+++.|.+....... ......|++|
T Consensus 305 ~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~H 384 (1724)
T 4f92_B 305 EIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIH 384 (1724)
T ss_dssp HHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEE
T ss_pred HHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEE
Confidence 22222 233345678999999999999999999876432110 0012359999
Q ss_pred cCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccC
Q 007931 316 YSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAG 395 (584)
Q Consensus 316 h~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaG 395 (584)
||||++++|..+++.|++|.++|||||+++++|||+|++++||.. ...||+..+.. .|.|..+|.||+||||
T Consensus 385 HagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~~----~~ls~~~~~Qm~GRAG 456 (1724)
T 4f92_B 385 HAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGRW----TELGALDILQMLGRAG 456 (1724)
T ss_dssp CSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTEE----EECCHHHHHHHHTTBS
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCCc----ccCCHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999953 45688876643 3899999999999999
Q ss_pred CC---CCcEEEEccChHH---HhhhCCCCC-CCcccccchhHHHHHHHhcCC-CCc--------------------cCC-
Q 007931 396 RV---RPGKCYRLYTEEY---FVKEIPAEG-IPEMQRSNLVSCVIQLKALGI-DNI--------------------LGF- 446 (584)
Q Consensus 396 R~---~~G~~~~l~~~~~---~~~~~~~~~-~pei~r~~l~~~~L~l~~~~~-~~~--------------------~~~- 446 (584)
|. ..|.++.+.++.+ |...+.... +-.-....+.+.+++...+|. .+. ..+
T Consensus 457 R~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~ 536 (1724)
T 4f92_B 457 RPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYG 536 (1724)
T ss_dssp CTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTT
T ss_pred CCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhc
Confidence 98 4799999887653 333222211 111122344455554444442 111 000
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHHcCCcc--C-CC--CCCHHHHHHhccCCCChhhhHHHHhhcccCCh-HHHHH
Q 007931 447 ---------DWPASPPPEAMIRALEVLYSLGVLD--D-DA--KLTSPTGFQVAEIPLEPMISKMILSSNELGCS-EEIIT 511 (584)
Q Consensus 447 ---------~~~~~p~~~~~~~al~~L~~~g~i~--~-~~--~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~-~~~l~ 511 (584)
+.++....+.+..++..|.+.|+|. + +| ..| ++|+++++++++|..++.+.......+. .+++.
T Consensus 537 ~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T-~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~ 615 (1724)
T 4f92_B 537 ISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVT-ELGRIASHYYITNDTVQTYNQLLKPTLSEIELFR 615 (1724)
T ss_dssp CCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEEC-HHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccc-hHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHH
Confidence 1111112345778999999999995 2 23 579 6999999999999999999988776654 45666
Q ss_pred HHHhhc
Q 007931 512 ISAVLS 517 (584)
Q Consensus 512 i~a~l~ 517 (584)
+.|+.+
T Consensus 616 ~is~s~ 621 (1724)
T 4f92_B 616 VFSLSS 621 (1724)
T ss_dssp HHHTCG
T ss_pred HHhCCh
Confidence 665544
No 8
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-40 Score=351.88 Aligned_cols=334 Identities=20% Similarity=0.243 Sum_probs=237.4
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHH--HhcC---ccCCCeEE
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYL--KEAG---WADGGRVI 98 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l--~~~~---~~~~~~~I 98 (584)
-.+|.++++++.....+.+....-|. .+|.+.+..+.++++++++|||||||| +++|.+. .... ...+.++|
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~~~pt-~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGYKIPT-PIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTCCSCC-HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCC-HHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 35799999999988888776666565 455566777788899999999999999 4455432 2221 11245789
Q ss_pred EEeCchHHHHHHH--HHHHHHHhCCcceeEEeeEeec-cCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCC
Q 007931 99 ACTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH 174 (584)
Q Consensus 99 ~v~~~r~la~~~~--~~~~~~~~~~~vg~~vg~~~~~-~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~H 174 (584)
+++|+|+|+.|.. .+++....+..++..+|..... +.......++|+|+||++|++.+..... +.++++||+||||
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah 213 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD 213 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH
T ss_pred EEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh
Confidence 9999999988743 3334444456666665532211 1111112689999999999999876654 8999999999999
Q ss_pred cCccchhHHHHHHHHHHH--hcCCceEEEEecccChH--HHHHHhhcCCCCCCCcccccCCCCCCeEEEECC---ccccc
Q 007931 175 ERSISTDILLGLLKKIQR--CRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEG---RGFNV 247 (584)
Q Consensus 175 er~~~~d~l~~~l~~~~~--~~~~~~vi~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v 247 (584)
+..+.++...+.+.+.. .+++.+++++|||++.+ .+...+...+ ..+.+.. ....+
T Consensus 214 -~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~----------------~~i~~~~~~~~~~~i 276 (434)
T 2db3_A 214 -RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNY----------------VFVAIGIVGGACSDV 276 (434)
T ss_dssp -HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSC----------------EEEEESSTTCCCTTE
T ss_pred -hhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCC----------------EEEEecccccccccc
Confidence 55555554444443333 35788999999999543 3333222111 0222211 11233
Q ss_pred eEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcc
Q 007931 248 QIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (584)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i 327 (584)
...+......+.... +..+..... +++||||+++++++.+++.|.+. ++.+..+||++++++|.++
T Consensus 277 ~~~~~~~~~~~k~~~----l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~ 342 (434)
T 2db3_A 277 KQTIYEVNKYAKRSK----LIEILSEQA-DGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQA 342 (434)
T ss_dssp EEEEEECCGGGHHHH----HHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTTSCHHHHHHH
T ss_pred ceEEEEeCcHHHHHH----HHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHH
Confidence 333333322332222 223322223 34999999999999999999875 7889999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEcc
Q 007931 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (584)
Q Consensus 328 ~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~ 406 (584)
++.|++|+.+|||||+++++|+|+|++++||++++ |.+..+|+||+||+||. +.|.|+.++
T Consensus 343 l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~------------------p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 343 LRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDM------------------PSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp HHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSC------------------CSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred HHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECC------------------CCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 99999999999999999999999999999999888 88999999999999999 889999999
Q ss_pred ChH
Q 007931 407 TEE 409 (584)
Q Consensus 407 ~~~ 409 (584)
+++
T Consensus 405 ~~~ 407 (434)
T 2db3_A 405 DPE 407 (434)
T ss_dssp CTT
T ss_pred ecc
Confidence 854
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5.6e-40 Score=343.87 Aligned_cols=340 Identities=18% Similarity=0.203 Sum_probs=239.4
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHhcCcc--CCCeEEEEe
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACT 101 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~--~~viv~a~TGsGKT~~ip~~l~~~~~~--~~~~~I~v~ 101 (584)
.++|+++++++.....+.+....-| +.+|.+++..+..+ +++++++|||||||..+...++..... .++++++++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~-~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKP-SKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4679999999999998877655544 55666677777776 899999999999997665555544322 345789999
Q ss_pred CchHHHHHHHHHHHHHHh---CCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCc
Q 007931 102 QPRRLAVQAVASRVAEEM---GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (584)
Q Consensus 102 ~~r~la~~~~~~~~~~~~---~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~ 177 (584)
|++.|+.|.. +.+.+.. +..++...| ......... ..+|+|+||+.+.+.+..... +.++++||+||||...
T Consensus 83 P~~~L~~q~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 83 PSRELARQTL-EVVQEMGKFTKITSQLIVP--DSFEKNKQI-NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp SSHHHHHHHH-HHHHHHTTTSCCCEEEEST--TSSCTTSCB-CCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHH-HHHHHHhcccCeeEEEEec--CchhhhccC-CCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 9998887633 3333322 222222211 111222222 689999999999998876654 8899999999999544
Q ss_pred cchhHHHHHHHHHHHhcCCceEEEEecccCh--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccceEEec
Q 007931 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYV 252 (584)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~ 252 (584)
...++...+........++.++++||||++. ..+...+...+. .+...... ..+...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 222 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNAN----------------TLELQTNEVNVDAIKQLYM 222 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCE----------------EECCCGGGCSCTTEEEEEE
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCe----------------EEEccccccccccccEEEE
Confidence 3344544444444456678999999999954 333333322220 12111111 11222222
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCC
Q 007931 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (584)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~ 332 (584)
..... ......+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|+
T Consensus 223 ~~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~ 290 (395)
T 3pey_A 223 DCKNE---ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE---------GHEVSILHGDLQTQERDRLIDDFR 290 (395)
T ss_dssp ECSSH---HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHH
T ss_pred EcCch---HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 22111 223344455555566789999999999999999999875 678999999999999999999999
Q ss_pred CCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHH
Q 007931 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (584)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (584)
+|+.+|||||+++++|+|+|++++||+++..+ +...+.|..+|.||+|||||. .+|.|+.++++..
T Consensus 291 ~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 291 EGRSKVLITTNVLARGIDIPTVSMVVNYDLPT------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp TTSCCEEEECGGGSSSCCCTTEEEEEESSCCB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CCCCCEEEECChhhcCCCcccCCEEEEcCCCC------------CCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 99999999999999999999999999987621 111145999999999999999 7799999998543
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.3e-40 Score=345.79 Aligned_cols=339 Identities=16% Similarity=0.167 Sum_probs=238.7
Q ss_pred cccccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCcc--CCCeEEEE
Q 007931 23 VFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIAC 100 (584)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~--~~~~~I~v 100 (584)
.....+|.++++++.....+.+.... ..+.+|.+++..+.+++++++++|||||||+.....++..... .+.+++++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 95 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFE-KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIM 95 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCC-SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEE
Confidence 33456799999999998888765444 3567888888888888899999999999996544444433221 34578999
Q ss_pred eCchHHHHHHHHHHHHH---HhCCcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCc
Q 007931 101 TQPRRLAVQAVASRVAE---EMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (584)
Q Consensus 101 ~~~r~la~~~~~~~~~~---~~~~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~He 175 (584)
+|++.|+.|. .+.+.+ ..+..++...|.....+. .......+|+|+||+.+++.+..... +.++++||+||||
T Consensus 96 ~P~~~L~~q~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH- 173 (400)
T 1s2m_A 96 VPTRELALQT-SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD- 173 (400)
T ss_dssp CSSHHHHHHH-HHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH-
T ss_pred cCCHHHHHHH-HHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch-
Confidence 9998888753 333333 334555444442211110 11122689999999999988876544 8999999999999
Q ss_pred CccchhHHHHHHHHHHH-hcCCceEEEEecccChHH---HHHHhhcCCCCCCCcccccCCCCCCeEEEECC--ccccceE
Q 007931 176 RSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFNVQI 249 (584)
Q Consensus 176 r~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 249 (584)
+....++. ..+..+.. ..++.++++||||++... +..++.... .+.... ....+..
T Consensus 174 ~~~~~~~~-~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 235 (400)
T 1s2m_A 174 KMLSRDFK-TIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPY-----------------EINLMEELTLKGITQ 235 (400)
T ss_dssp HHSSHHHH-HHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE-----------------EESCCSSCBCTTEEE
T ss_pred HhhhhchH-HHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCe-----------------EEEeccccccCCcee
Confidence 34444433 33444433 456789999999995432 223332211 111111 1112222
Q ss_pred EecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccC
Q 007931 250 HYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFS 329 (584)
Q Consensus 250 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~ 329 (584)
++......+.. ..+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++
T Consensus 236 ~~~~~~~~~k~----~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~ 302 (400)
T 1s2m_A 236 YYAFVEERQKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL---------GYSCYYSHARMKQQERNKVFH 302 (400)
T ss_dssp EEEECCGGGHH----HHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHH
T ss_pred EEEEechhhHH----HHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc---------CCCeEEecCCCCHHHHHHHHH
Confidence 33222222222 22333334456678999999999999999999886 778999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccCh
Q 007931 330 PTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (584)
Q Consensus 330 ~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (584)
.|++|..+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. ++|.|+.++++
T Consensus 303 ~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~ 364 (400)
T 1s2m_A 303 EFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF------------------PKTAETYLHRIGRSGRFGHLGLAINLINW 364 (400)
T ss_dssp HHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHCBSSCTTCCEEEEEEECG
T ss_pred HHhcCCCcEEEEcCccccCCCccCCCEEEEeCC------------------CCCHHHHHHhcchhcCCCCCceEEEEecc
Confidence 999999999999999999999999999999887 88999999999999999 89999999998
Q ss_pred HHHhh
Q 007931 409 EYFVK 413 (584)
Q Consensus 409 ~~~~~ 413 (584)
++...
T Consensus 365 ~~~~~ 369 (400)
T 1s2m_A 365 NDRFN 369 (400)
T ss_dssp GGHHH
T ss_pred chHHH
Confidence 76543
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.1e-40 Score=345.29 Aligned_cols=342 Identities=15% Similarity=0.129 Sum_probs=235.3
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHhcCc--cCCCeEEEE
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIAC 100 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~--~~viv~a~TGsGKT~~ip~~l~~~~~--~~~~~~I~v 100 (584)
...+|.++++++.....+.+....-|. .+|.+++..+.++ +++++++|||||||......++.... ..+.+++++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~-~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPS-KIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCC-HHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCC-HHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 456799999999999888776555554 5555666666665 89999999999999665444443322 233478999
Q ss_pred eCchHHHHHHHHHHHHHHhC----CcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC--CCCCcEEEEeCCC
Q 007931 101 TQPRRLAVQAVASRVAEEMG----VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAH 174 (584)
Q Consensus 101 ~~~r~la~~~~~~~~~~~~~----~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iIiDE~H 174 (584)
+|+++|+.| +++++.+... ..++...|... ....... ..+|+|+||+.+++.+..... +.++++||+||||
T Consensus 102 ~P~~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 102 SPTYELALQ-TGKVIEQMGKFYPELKLAYAVRGNK-LERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp CSSHHHHHH-HHHHHHHHTTTSTTCCEEEECTTCC-CCTTCCC-CCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH
T ss_pred CCCHHHHHH-HHHHHHHHHhhcccceEEEeecCcc-hhhhhcC-CCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH
Confidence 999988876 3333333322 23332222111 1111222 579999999999999866433 6899999999999
Q ss_pred cCccchhHHHHHHHHHHHhcCCceEEEEecccChH--HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceE
Q 007931 175 ERSISTDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQI 249 (584)
Q Consensus 175 er~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~ 249 (584)
.......+...+........++.++++||||++.. .+...+...+. .+.+... ...+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 242 (412)
T 3fht_A 179 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN----------------VIKLKREEETLDTIKQ 242 (412)
T ss_dssp HHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE----------------EECCCGGGSSCTTEEE
T ss_pred HHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCe----------------EEeeccccccccCceE
Confidence 43222333333333344456789999999999553 33333222220 2222111 112222
Q ss_pred EecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccC
Q 007931 250 HYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFS 329 (584)
Q Consensus 250 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~ 329 (584)
.+...... ......+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++
T Consensus 243 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~ 310 (412)
T 3fht_A 243 YYVLCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIE 310 (412)
T ss_dssp EEEECSSH---HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHH
T ss_pred EEEEcCCh---HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC---------CCeEEEecCCCCHHHHHHHHH
Confidence 23222222 123334444444446678999999999999999999875 778999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccCh
Q 007931 330 PTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (584)
Q Consensus 330 ~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (584)
.|++|+.+|||||+++++|+|+|++++||+++......+ +.|..+|.||+|||||. .+|.|+.++++
T Consensus 311 ~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 378 (412)
T 3fht_A 311 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDS 378 (412)
T ss_dssp HHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEEECS
T ss_pred HHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCC------------CcchheeecccCcccCCCCCceEEEEEcC
Confidence 999999999999999999999999999999887221110 25789999999999998 78999999986
Q ss_pred HH
Q 007931 409 EY 410 (584)
Q Consensus 409 ~~ 410 (584)
..
T Consensus 379 ~~ 380 (412)
T 3fht_A 379 KH 380 (412)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.2e-40 Score=340.60 Aligned_cols=334 Identities=21% Similarity=0.284 Sum_probs=239.7
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcC-CEEEEEcCCCChHHHHHHHHHHhcCcc-CCCeEEEEeCch
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPR 104 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~-~~viv~a~TGsGKT~~ip~~l~~~~~~-~~~~~I~v~~~r 104 (584)
.+|.++++++.....+.+....-| +.+|.+++..+.++ +++++.+|||||||++....+...... .+.++++++|++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKP-TDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSC-CHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 469999999999888877655545 45555566665555 799999999999997665555544322 345688888888
Q ss_pred HHHHHHHHHHHHHHhC---CcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccch
Q 007931 105 RLAVQAVASRVAEEMG---VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (584)
Q Consensus 105 ~la~~~~~~~~~~~~~---~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~ 180 (584)
.|+.| +++.+.+..+ ..++...|.....+........+|+|+||+.+.+.+..... +.++++||+||+|. ..+.
T Consensus 85 ~L~~q-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~-~~~~ 162 (367)
T 1hv8_A 85 ELAIQ-VADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE-MLNM 162 (367)
T ss_dssp HHHHH-HHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH-HHTT
T ss_pred HHHHH-HHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH-hhhh
Confidence 87765 4555555443 33333333211111001111578999999999998877655 88999999999994 3333
Q ss_pred hHHHHHHHHHHHhcCCceEEEEecccChHH---HHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcc
Q 007931 181 DILLGLLKKIQRCRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS 257 (584)
Q Consensus 181 d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 257 (584)
++...+.+.+....++.++++||||++... +..+++... .+. .....++...+......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~ 224 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYS-----------------FIK-AKINANIEQSYVEVNEN 224 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEE-----------------EEE-CCSSSSSEEEEEECCGG
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCe-----------------EEE-ecCCCCceEEEEEeChH
Confidence 344444444444567899999999996542 334443321 111 12222344444444444
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcE
Q 007931 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (584)
Q Consensus 258 ~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~ 337 (584)
+..+... .+.. ..++++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|++|+.+
T Consensus 225 ~~~~~l~----~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 290 (367)
T 1hv8_A 225 ERFEALC----RLLK-NKEFYGLVFCKTKRDTKELASMLRDI---------GFKAGAIHGDLSQSQREKVIRLFKQKKIR 290 (367)
T ss_dssp GHHHHHH----HHHC-STTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHH----HHHh-cCCCcEEEEECCHHHHHHHHHHHHhc---------CCCeEEeeCCCCHHHHHHHHHHHHcCCCe
Confidence 4333332 2222 46678999999999999999999875 77899999999999999999999999999
Q ss_pred EEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHhh
Q 007931 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 338 vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (584)
|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. ++|.|+.++++.++..
T Consensus 291 vlv~T~~~~~Gid~~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 291 ILIATDVMSRGIDVNDLNCVINYHL------------------PQNPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp EEEECTTHHHHCCCSCCSEEEESSC------------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred EEEECChhhcCCCcccCCEEEEecC------------------CCCHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 9999999999999999999999887 88999999999999999 7999999999876654
No 13
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-40 Score=380.53 Aligned_cols=351 Identities=16% Similarity=0.126 Sum_probs=251.6
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchH
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~ 105 (584)
+.+|..++++......+ .....++++.+|.+++..+.++++++++||||||||++....++.. ...+++++|++|+++
T Consensus 161 ~~~~~~~~l~~~~~~~~-~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~-l~~g~rvlvl~Ptra 238 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNE-ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKA 238 (1108)
T ss_dssp SSCCCSSTTTTTCCCSC-SSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHH-HHTTCEEEEEESSHH
T ss_pred CCCcccCCCChhhhHHH-HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-HhcCCeEEEEcCcHH
Confidence 44577777777665554 5556788999999999999999999999999999997666555544 245678899999988
Q ss_pred HHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHH
Q 007931 106 LAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILL 184 (584)
Q Consensus 106 la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~ 184 (584)
|+.| ..+++.+.++ .+|..+|. ..... .++|+|+||++|.+.+..+.. +.++++||||||| +..+.++..
T Consensus 239 La~Q-~~~~l~~~~~-~VglltGd-----~~~~~-~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~ 309 (1108)
T 3l9o_A 239 LSNQ-KYRELLAEFG-DVGLMTGD-----ITINP-DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGV 309 (1108)
T ss_dssp HHHH-HHHHHHHHTS-SEEEECSS-----CBCCC-SCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHH
T ss_pred HHHH-HHHHHHHHhC-CccEEeCc-----cccCC-CCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHH
Confidence 8875 4555666665 55554442 22233 689999999999999887766 8899999999999 555555544
Q ss_pred HHHHHHHHhcCCceEEEEeccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCc-------
Q 007931 185 GLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV------- 256 (584)
Q Consensus 185 ~~l~~~~~~~~~~~vi~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 256 (584)
.+...+....+++++|+||||+ +...+.+|++..... ...++..+.+..|++.++.....
T Consensus 310 ~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~------------~~~vi~~~~rp~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 310 VWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQ------------PCHIVYTNFRPTPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp HHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCS------------CEEEEEECCCSSCEEEEEEETTSSCCEEEE
T ss_pred HHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCC------------CeEEEecCCCcccceEEEeecCCcceeeee
Confidence 4444455567889999999999 778899998753211 11144445555554443321100
Q ss_pred ---c-----hHH------------------------------------HHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHH
Q 007931 257 ---S-----DYV------------------------------------QAAVSTVLLIHDKEPPGDILVFLTGQDDIDAT 292 (584)
Q Consensus 257 ---~-----~~~------------------------------------~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l 292 (584)
. .+. ...+..++........+++||||+++++++.+
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHH
Confidence 0 000 22233344444455677999999999999999
Q ss_pred HHHHHHHhhhccC---------------------CC---------CCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeC
Q 007931 293 IQLLTEEARTSKK---------------------NS---------SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST 342 (584)
Q Consensus 293 ~~~L~~~~~~~~~---------------------~~---------~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT 342 (584)
+..|......... .. ....|.++||+|++.+|..+++.|++|.++|||||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 9988543111000 00 01228999999999999999999999999999999
Q ss_pred CCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCC---CcEEEEccChH
Q 007931 343 NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYTEE 409 (584)
Q Consensus 343 ~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~ 409 (584)
+++++|||+|++++||+++. .||... ..|+|..+|+||+|||||.+ .|.||.++++.
T Consensus 538 ~vla~GIDiP~v~~VI~~~~----~~d~~~------~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVR----KWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSE----EESSSC------EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred cHHhcCCCCCCceEEEecCc----ccCccc------cccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999998654 344332 23889999999999999995 89999999754
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.7e-40 Score=350.07 Aligned_cols=342 Identities=15% Similarity=0.173 Sum_probs=238.4
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc--cCCCeEEEEeC
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQ 102 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~--~~~~~~I~v~~ 102 (584)
...+|.++++++.....+.+....- .+.+|.+++..+.+++++++++|||||||......++.... ..+.++++++|
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~-~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEK-PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCS-CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCC-CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 3457999999999988887654443 56677778888888899999999999999665544444322 24567899999
Q ss_pred chHHHHHHHHH--HHHHHhCCcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCcc
Q 007931 103 PRRLAVQAVAS--RVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (584)
Q Consensus 103 ~r~la~~~~~~--~~~~~~~~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (584)
+++|+.|.... .+....+..++...|.....+. .......+|+++||+.|.+.+..... +.++++||+||+|. ..
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~~ 192 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-ML 192 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HT
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-HH
Confidence 99888763322 2223334444444442111110 00111478999999999998876654 88899999999993 44
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceEEecCCC
Q 007931 179 STDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHYVEEP 255 (584)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~ 255 (584)
+.++...+.+.+....++.+++++|||++.+. .++...... .+..+.+... ...+...+....
T Consensus 193 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (410)
T 2j0s_A 193 NKGFKEQIYDVYRYLPPATQVVLISATLPHEI-LEMTNKFMT-------------DPIRILVKRDELTLEGIKQFFVAVE 258 (410)
T ss_dssp STTTHHHHHHHHTTSCTTCEEEEEESCCCHHH-HTTGGGTCS-------------SCEEECCCGGGCSCTTEEEEEEEES
T ss_pred hhhhHHHHHHHHHhCccCceEEEEEcCCCHHH-HHHHHHHcC-------------CCEEEEecCccccCCCceEEEEEeC
Confidence 44444444444444567889999999996532 222211110 0001111111 112222222222
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCC
Q 007931 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (584)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~ 335 (584)
..+.. ...+..+......+++||||+++++++.+++.|.+. ++.+..+||++++++|.++++.|++|.
T Consensus 259 ~~~~k---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (410)
T 2j0s_A 259 REEWK---FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSGA 326 (410)
T ss_dssp STTHH---HHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHTS
T ss_pred cHHhH---HHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC---------CCceEEeeCCCCHHHHHHHHHHHHCCC
Confidence 22211 222333333335568999999999999999999875 778999999999999999999999999
Q ss_pred cEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHh
Q 007931 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (584)
Q Consensus 336 ~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (584)
.+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||. ++|.|+.++++.+..
T Consensus 327 ~~vlv~T~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 327 SRVLISTDVWARGLDVPQVSLIINYDL------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp SCEEEECGGGSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred CCEEEECChhhCcCCcccCCEEEEECC------------------CCCHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 999999999999999999999999887 88999999999999999 899999999977643
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.3e-39 Score=355.76 Aligned_cols=338 Identities=14% Similarity=0.118 Sum_probs=235.8
Q ss_pred ccccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEe
Q 007931 24 FLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
...+++.++++++.....|.+.-.--....+|.+++..+.+++++++++|||+||| +++|.+. ..+.+|+++
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVis 91 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVIC 91 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEEC
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEe
Confidence 35566777888888776665532222345678888999999999999999999999 5677643 245789999
Q ss_pred CchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCc-------CCCCCceEEEechHHHH------HHHccCCCCCCCcEE
Q 007931 102 QPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDF-------TNKDLTAIKFLTDGVLL------REMMDDPLLTKYSVI 168 (584)
Q Consensus 102 ~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~-------~~~~~~~I~~~T~~~ll------~~l~~~~~l~~~~~i 168 (584)
|+++|+.+++.. + ...|..++...|.....+.. ......+|+|+||++|. +.+.....+.++++|
T Consensus 92 P~~~L~~q~~~~-l-~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~i 169 (591)
T 2v1x_A 92 PLISLMEDQLMV-L-KQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRI 169 (591)
T ss_dssp SCHHHHHHHHHH-H-HHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHH-H-HhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEE
Confidence 999998876554 3 33466665544432211110 01226899999999874 223222236789999
Q ss_pred EEeCCCcCccc-hhHHH--HHHHHHHHhcCCceEEEEecccChH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECC
Q 007931 169 MVDEAHERSIS-TDILL--GLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEG 242 (584)
Q Consensus 169 IiDE~Her~~~-~d~l~--~~l~~~~~~~~~~~vi~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (584)
||||||...-. .++.. ..+..+....++.++|++|||++.. .+.++++... + .....+
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~---------------~-~~~~~~ 233 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK---------------C-FTFTAS 233 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCS---------------C-EEEECC
T ss_pred EEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCC---------------c-EEEecC
Confidence 99999953321 11211 1223444566789999999999664 3455554332 0 111111
Q ss_pred ccccceEEecCCCcchHHHHHHHHHHHHHh-cCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCH
Q 007931 243 RGFNVQIHYVEEPVSDYVQAAVSTVLLIHD-KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSR 321 (584)
Q Consensus 243 ~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~ 321 (584)
...+ .+.|...............+..... ...++++||||+++++++.+++.|.+. ++.+..+||+|++
T Consensus 234 ~~r~-nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~---------g~~~~~~h~~l~~ 303 (591)
T 2v1x_A 234 FNRP-NLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL---------GIHAGAYHANLEP 303 (591)
T ss_dssp CCCT-TEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCH
T ss_pred CCCc-ccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCCCH
Confidence 1111 1112111111112223334444433 335678999999999999999999875 7889999999999
Q ss_pred HHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCc
Q 007931 322 AEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPG 400 (584)
Q Consensus 322 ~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G 400 (584)
++|.++++.|++|..+|||||+++++|||+|+|++||++++ |.|.++|.||+|||||. .+|
T Consensus 304 ~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~------------------p~s~~~y~Qr~GRaGR~G~~g 365 (591)
T 2v1x_A 304 EDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM------------------SKSMENYYQESGRAGRDDMKA 365 (591)
T ss_dssp HHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC------------------CSSHHHHHHHHTTSCTTSSCE
T ss_pred HHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC------------------CCCHHHHHHHhccCCcCCCCc
Confidence 99999999999999999999999999999999999999988 88999999999999999 799
Q ss_pred EEEEccChHHHhh
Q 007931 401 KCYRLYTEEYFVK 413 (584)
Q Consensus 401 ~~~~l~~~~~~~~ 413 (584)
.|+.+|++.+...
T Consensus 366 ~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 366 DCILYYGFGDIFR 378 (591)
T ss_dssp EEEEEECHHHHHH
T ss_pred eEEEEEChHHHHH
Confidence 9999999876543
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6e-39 Score=335.88 Aligned_cols=336 Identities=17% Similarity=0.168 Sum_probs=237.6
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcC--ccCCCeEEEEeC
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQ 102 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~--~~~~~~~I~v~~ 102 (584)
.+++|.++++++.....|.+... -..+.+|.+++..+.+++++++++|||+|||......++... ...+.++++++|
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~-~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 84 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVDCGF-EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 84 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHHHSC-CSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECS
T ss_pred CCCChhhcCCCHHHHHHHHHCCC-CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECC
Confidence 34679999999998888866432 236788888899998899999999999999965443333332 123457899999
Q ss_pred chHHHHHHHHHHHHHHh----CCcceeEEeeEeeccC--cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCc
Q 007931 103 PRRLAVQAVASRVAEEM----GVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (584)
Q Consensus 103 ~r~la~~~~~~~~~~~~----~~~vg~~vg~~~~~~~--~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~He 175 (584)
++.|+.|. .+.+.+.. +..++...|.....+. .......+|+|+||+.+...+..... +.++++||+||||.
T Consensus 85 ~~~L~~q~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 85 TRELAFQI-SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 163 (391)
T ss_dssp CHHHHHHH-HHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHH
T ss_pred CHHHHHHH-HHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHH
Confidence 98888763 33333332 4555444442111000 00111468999999999998876654 89999999999995
Q ss_pred CccchhHHHHHHHHHHHhcCCceEEEEecccCh--HHH-HHHhhcCCCCCCCcccccCCCCCCeEEEECCc----cccce
Q 007931 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSM-SAFFHARKGRRGLEGVELVPRLEPAILSVEGR----GFNVQ 248 (584)
Q Consensus 176 r~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~ 248 (584)
..-..++...+.+.+....++.+++++|||++. ..+ ..++.... .+.+... ...+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 226 (391)
T 1xti_A 164 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM-----------------EIFVDDETKLTLHGLQ 226 (391)
T ss_dssp HTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCE-----------------EEECCCCCCCCCTTCE
T ss_pred HhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCe-----------------EEEecCccccCcccce
Confidence 433345544444444445568999999999943 333 33443221 1211111 11223
Q ss_pred EEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhccc
Q 007931 249 IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVF 328 (584)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 328 (584)
..+......+.... +..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.+++
T Consensus 227 ~~~~~~~~~~~~~~----l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~ 293 (391)
T 1xti_A 227 QYYVKLKDNEKNRK----LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLSRY 293 (391)
T ss_dssp EEEEECCGGGHHHH----HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCchhHHHH----HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHH
Confidence 33333333332222 223333346788999999999999999999875 67899999999999999999
Q ss_pred CCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccC
Q 007931 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (584)
Q Consensus 329 ~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (584)
+.|++|..+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. ++|.|+.+++
T Consensus 294 ~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 355 (391)
T 1xti_A 294 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVS 355 (391)
T ss_dssp HHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC------------------CSSHHHHHHHHCBCSSSCCCCEEEEEEC
T ss_pred HHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHhcccccCCCCceEEEEEEc
Confidence 9999999999999999999999999999999887 88999999999999999 7899999998
Q ss_pred hHH
Q 007931 408 EEY 410 (584)
Q Consensus 408 ~~~ 410 (584)
+..
T Consensus 356 ~~~ 358 (391)
T 1xti_A 356 DEN 358 (391)
T ss_dssp SHH
T ss_pred ccc
Confidence 654
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=346.96 Aligned_cols=338 Identities=19% Similarity=0.201 Sum_probs=232.7
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHH--hcC-----------
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLK--EAG----------- 90 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~--~ip~~l~--~~~----------- 90 (584)
..+|.++++++.....+.+....-| +.+|.+++..+.++++++++||||||||. ++|.+.. ...
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~-~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRP-TPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 3569999999998888876555544 56666677888889999999999999994 4454321 111
Q ss_pred -----ccCCCeEEEEeCchHHHHHHHH--HHHHHHhCCcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCC-
Q 007931 91 -----WADGGRVIACTQPRRLAVQAVA--SRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL- 161 (584)
Q Consensus 91 -----~~~~~~~I~v~~~r~la~~~~~--~~~~~~~~~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~- 161 (584)
.....++++++|+++|+.|... +.+....+..++...|.....+. ......++|+|+||+.|.+.+..+..
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~ 172 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG 172 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBC
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcC
Confidence 0112468999999999886332 22333344555544442211110 01112579999999999999877665
Q ss_pred CCCCcEEEEeCCCcCccchhHHHHHHHHHHHh-----cCCceEEEEecccCh--HHHHHHhhcCCCCCCCcccccCCCCC
Q 007931 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRC-----RSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLE 234 (584)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~-----~~~~~vi~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (584)
+.++++||+||||. ....++. ..++.+... ....++++||||++. ..+...+...+.
T Consensus 173 ~~~~~~iViDEah~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-------------- 236 (417)
T 2i4i_A 173 LDFCKYLVLDEADR-MLDMGFE-PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI-------------- 236 (417)
T ss_dssp CTTCCEEEESSHHH-HHHTTCH-HHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCE--------------
T ss_pred hhhCcEEEEEChhH-hhccCcH-HHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCE--------------
Confidence 88999999999993 3322222 233333331 236789999999944 333333322220
Q ss_pred CeEEEECC---ccccceEEecCCCcchHHHHHHHHHHHHHhc-CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCe
Q 007931 235 PAILSVEG---RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDK-EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGL 310 (584)
Q Consensus 235 ~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~ 310 (584)
.+.+.. ....+...+......+... .+..+... ..++++||||+++++++.+++.|.+. ++
T Consensus 237 --~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~ 301 (417)
T 2i4i_A 237 --FLAVGRVGSTSENITQKVVWVEESDKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GY 301 (417)
T ss_dssp --EEEEC----CCSSEEEEEEECCGGGHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT---------TC
T ss_pred --EEEeCCCCCCccCceEEEEEeccHhHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC---------CC
Confidence 122111 1112222222222222222 22233322 35678999999999999999999875 78
Q ss_pred EEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHh
Q 007931 311 IILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQR 390 (584)
Q Consensus 311 ~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR 390 (584)
.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+++. |.|..+|+||
T Consensus 302 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr 363 (417)
T 2i4i_A 302 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHR 363 (417)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSC------------------CSSHHHHHHH
T ss_pred CeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcC------------------CCCHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999887 8899999999
Q ss_pred ccccCCC-CCcEEEEccChHHHhh
Q 007931 391 AGRAGRV-RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 391 ~GRaGR~-~~G~~~~l~~~~~~~~ 413 (584)
+||+||. ++|.|+.++++.+...
T Consensus 364 ~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 364 IGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp HTTBCC--CCEEEEEEECGGGGGG
T ss_pred cCccccCCCCceEEEEEccccHHH
Confidence 9999999 7899999999876543
No 18
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=350.93 Aligned_cols=341 Identities=15% Similarity=0.137 Sum_probs=124.2
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHhcCcc--CCCeEEEEe
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACT 101 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~--~~viv~a~TGsGKT~~ip~~l~~~~~~--~~~~~I~v~ 101 (584)
..+|.++++++..+..+.+....-|.. +|.+++..+..+ ++++++||||||||......++..... .+.++|+++
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~-~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 169 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSK-IQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCH-HHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEEC
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCH-HHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 457999999999999998866666554 555566666655 899999999999996655555444322 223789999
Q ss_pred CchHHHHHHHHHHHHHHhC----CcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC--CCCCcEEEEeCCCc
Q 007931 102 QPRRLAVQAVASRVAEEMG----VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHE 175 (584)
Q Consensus 102 ~~r~la~~~~~~~~~~~~~----~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iIiDE~He 175 (584)
|+++|+.|. .+.+.+... ..++..+|. ......... ..+|+|+||+.|++.+..... +.++++|||||+|.
T Consensus 170 Pt~~La~Q~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 170 PTYELALQT-GKVIEQMGKFYPELKLAYAVRG-NKLERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SSHHHHHHH-HHHHHHHHTTSTTCCEEEESTT-CCCCTTCCC-CCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred ChHHHHHHH-HHHHHHHHhhCCCceEEEEeCC-ccccccccC-CCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 999998863 233333222 222222221 111112222 578999999999999876443 68999999999994
Q ss_pred CccchhHHHHHHHHHHHhcCCceEEEEecccChH--HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccc---cceEE
Q 007931 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIH 250 (584)
Q Consensus 176 r~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~ 250 (584)
......+.............+.++|++|||++.+ .+...+...+ ..+.+..... .+...
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~~~~~ 310 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP----------------NVIKLKREEETLDTIKQY 310 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSE----------------EEEEEC------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCC----------------eEEeccccccCcCCceEE
Confidence 3222344444444444456789999999999553 3333332222 1233322111 11112
Q ss_pred ecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCC
Q 007931 251 YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (584)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 330 (584)
+...... ......+..+......+++||||+++++++.+++.|.+. ++.+..+||++++.+|.++++.
T Consensus 311 ~~~~~~~---~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~ 378 (479)
T 3fmp_B 311 YVLCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIER 378 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCH---HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC---------CccEEEecCCCCHHHHHHHHHH
Confidence 2211111 112233334444445678999999999999999999775 7889999999999999999999
Q ss_pred CCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 331 ~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
|++|..+|||||+++++|+|+|++++||++++..... .+.|..+|.||+|||||. .+|.|+.++++.
T Consensus 379 f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~------------~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 379 FREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD------------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHcCCCcEEEEccccccCCccccCCEEEEecCCCCCc------------cCCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 9999999999999999999999999999987721110 025778999999999998 789999999865
Q ss_pred H
Q 007931 410 Y 410 (584)
Q Consensus 410 ~ 410 (584)
.
T Consensus 447 ~ 447 (479)
T 3fmp_B 447 H 447 (479)
T ss_dssp -
T ss_pred c
Confidence 4
No 19
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8.2e-40 Score=355.08 Aligned_cols=304 Identities=21% Similarity=0.276 Sum_probs=223.8
Q ss_pred HHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCC
Q 007931 42 IEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV 121 (584)
Q Consensus 42 l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~ 121 (584)
..+.|..+|++.+|++|+..+.++++++++||||||||+++++.+++. +.++++++|+|+++. ++++++++.++.
T Consensus 209 ~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~-Qia~~l~~~~g~ 283 (666)
T 3o8b_A 209 SMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATL-GFGAYMSKAHGI 283 (666)
T ss_dssp HHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHH-HHHHHHHHHHSC
T ss_pred hhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----CCeEEEEcchHHHHH-HHHHHHHHHhCC
Confidence 456788999999999999999999999999999999999999888764 346788888776665 567789999999
Q ss_pred cceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEE
Q 007931 122 KVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (584)
Q Consensus 122 ~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~ 201 (584)
.++..+|+... .. ..+|+|+|||+|++. ....+.++++|||||||+++...+..+..+...........+++
T Consensus 284 ~vg~~vG~~~~-----~~-~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil 355 (666)
T 3o8b_A 284 DPNIRTGVRTI-----TT-GAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVL 355 (666)
T ss_dssp CCEEECSSCEE-----CC-CCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEE
T ss_pred CeeEEECcEec-----cC-CCCEEEECcHHHHhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEE
Confidence 88888886442 22 689999999998431 22237789999999999877665554444444333333444788
Q ss_pred EecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEE
Q 007931 202 SSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILV 281 (584)
Q Consensus 202 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLV 281 (584)
||||++.. +.... +....+.-. +.-...+...... ......+++||
T Consensus 356 ~SAT~~~~-----i~~~~---------------p~i~~v~~~-~~~~i~~~~~~~~-------------l~~~~~~~vLV 401 (666)
T 3o8b_A 356 ATATPPGS-----VTVPH---------------PNIEEVALS-NTGEIPFYGKAIP-------------IEAIRGGRHLI 401 (666)
T ss_dssp EESSCTTC-----CCCCC---------------TTEEEEECB-SCSSEEETTEEEC-------------GGGSSSSEEEE
T ss_pred ECCCCCcc-----cccCC---------------cceEEEeec-ccchhHHHHhhhh-------------hhhccCCcEEE
Confidence 89999542 10000 001111000 0001111110000 11235788999
Q ss_pred EeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecC
Q 007931 282 FLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSG 361 (584)
Q Consensus 282 F~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g 361 (584)
||+++++++.+++.|.+. ++.+..+||+|++++ ++++..+||||||++++|||+| |++|||+|
T Consensus 402 Fv~Tr~~ae~la~~L~~~---------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 402 FCHSKKKCDELAAKLSGL---------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp ECSCHHHHHHHHHHHHTT---------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECC
T ss_pred EeCCHHHHHHHHHHHHhC---------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecC
Confidence 999999999999999765 788999999999875 3456679999999999999997 99999999
Q ss_pred Ccccee----ecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHH
Q 007931 362 FSKQRF----YNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYF 411 (584)
Q Consensus 362 ~~k~~~----~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 411 (584)
+.+..+ |||..++... ..|.|.++|+||+||+||.++|. |.|+++.+.
T Consensus 465 l~~~~ViNyDydP~~gl~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred cccccccccccccccccccc-cCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 888765 5566666543 56999999999999999998999 999987654
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.7e-40 Score=346.35 Aligned_cols=338 Identities=17% Similarity=0.222 Sum_probs=127.5
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc--cCCCeEEEEeCch
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPR 104 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~--~~~~~~I~v~~~r 104 (584)
.+|.++++++.....+.+.... ..+.+|.+++..+.+++++++++|||||||......++.... ..+.++++++|++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 99 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFE-EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 99 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCC-SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CChhhcCCCHHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCH
Confidence 4599999999998888775443 456777788888888889999999999999654433333222 2345789999999
Q ss_pred HHHHHHHHH--HHHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchh
Q 007931 105 RLAVQAVAS--RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTD 181 (584)
Q Consensus 105 ~la~~~~~~--~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d 181 (584)
.|+.|.... .+....+..++..+|.....+........+|+|+||+.+.+.+..... +.++++||+||+|. ....+
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~-~~~~~ 178 (394)
T 1fuu_A 100 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSG 178 (394)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTT
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH-hhCCC
Confidence 888763322 222334555555555332211111111478999999999998876654 88999999999994 32233
Q ss_pred HHHHHHHHHHHhcCCceEEEEecccChH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccc---cceEEecCCC
Q 007931 182 ILLGLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYVEEP 255 (584)
Q Consensus 182 ~l~~~l~~~~~~~~~~~vi~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~ 255 (584)
+...+.+.+....++.++++||||++.. ....++.... .+....... .+...+....
T Consensus 179 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
T 1fuu_A 179 FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-----------------RILVKKDELTLEGIKQFYVNVE 241 (394)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-----------------EEEECC----------------
T ss_pred cHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe-----------------EEEecCccccCCCceEEEEEcC
Confidence 3333444444456788999999999543 2333443221 222221111 1111222111
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCC
Q 007931 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (584)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~ 335 (584)
..++ ....+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|++|.
T Consensus 242 ~~~~---~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~ 309 (394)
T 1fuu_A 242 EEEY---KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGS 309 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhh---HHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEeeCCCCHHHHHHHHHHHHCCC
Confidence 1111 1222233333345678999999999999999999765 778999999999999999999999999
Q ss_pred cEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHhh
Q 007931 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 336 ~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (584)
.+|||||+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++++...
T Consensus 310 ~~vlv~T~~~~~Gldi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 310 SRILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CcEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 999999999999999999999999877 88999999999999999 7899999999876544
No 21
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.7e-39 Score=346.59 Aligned_cols=329 Identities=16% Similarity=0.165 Sum_probs=234.0
Q ss_pred ccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchH
Q 007931 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRR 105 (584)
Q Consensus 28 ~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~ 105 (584)
+|.++++++.....+.+.-.--..+.+|.+++.++.+++++++++|||+||| +++|.+.. .+.+|+++|+++
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~a 76 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLIS 76 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHH
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHH
Confidence 5889999888777676532222346788889999999999999999999999 47776542 357899999999
Q ss_pred HHHHHHHHHHHHHhCCcceeEEeeEeeccC-----cCCCCCceEEEechHHHHHHHccC-CCCCCCcEEEEeCCCcCcc-
Q 007931 106 LAVQAVASRVAEEMGVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSI- 178 (584)
Q Consensus 106 la~~~~~~~~~~~~~~~vg~~vg~~~~~~~-----~~~~~~~~I~~~T~~~ll~~l~~~-~~l~~~~~iIiDE~Her~~- 178 (584)
|+.+++.. ....+..+....|.....+. .......+|+|+||++|......+ ....++++|||||||..+-
T Consensus 77 L~~q~~~~--l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~ 154 (523)
T 1oyw_A 77 LMKDQVDQ--LQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQW 154 (523)
T ss_dssp HHHHHHHH--HHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTT
T ss_pred HHHHHHHH--HHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcC
Confidence 99876555 23456665444442211110 001125799999999985321111 1146889999999995432
Q ss_pred --chhHHHHHHHHHHHhcCCceEEEEecccChH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecC
Q 007931 179 --STDILLGLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVE 253 (584)
Q Consensus 179 --~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 253 (584)
+.......+..+....++.+++++|||++.. .+.++++.... .+.+.+...+ .+.|..
T Consensus 155 g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~----------------~~~~~~~~r~-~l~~~v 217 (523)
T 1oyw_A 155 GHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP----------------LIQISSFDRP-NIRYML 217 (523)
T ss_dssp SSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSC----------------EEEECCCCCT-TEEEEE
T ss_pred CCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCC----------------eEEeCCCCCC-ceEEEE
Confidence 1222233344555666789999999999654 34555543210 2222222111 112211
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCC
Q 007931 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (584)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~ 333 (584)
....+..+. +........++++||||+++++++.+++.|.+. ++.+..+||+|++++|.++++.|++
T Consensus 218 ~~~~~~~~~----l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~~ 284 (523)
T 1oyw_A 218 MEKFKPLDQ----LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK---------GISAAAYHAGLENNVRADVQEKFQR 284 (523)
T ss_dssp EECSSHHHH----HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred EeCCCHHHH----HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHc
Confidence 111222222 333333346678999999999999999999875 7789999999999999999999999
Q ss_pred CCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHh
Q 007931 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (584)
Q Consensus 334 g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (584)
|+.+|||||+++++|||+|+|++||+++. |.|.++|.||+|||||. .+|.|+.+|++++..
T Consensus 285 g~~~vlVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 285 DDLQIVVATVAFGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp TSCSEEEECTTSCTTTCCTTCCEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred CCCeEEEEechhhCCCCccCccEEEEECC------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 99999999999999999999999999888 88999999999999999 689999999987654
No 22
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.6e-39 Score=353.33 Aligned_cols=319 Identities=17% Similarity=0.191 Sum_probs=223.8
Q ss_pred cCC-CCCCccchhhHHH-HhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHH
Q 007931 29 LSS-ASSIGYGYASIEK-QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (584)
Q Consensus 29 ~~~-l~~~~~~~~~l~~-~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~l 106 (584)
|++ +++++.++..+.+ ++..+|++++ . +..+.++++++++||||||||+.+...++......+.++++++|+|+|
T Consensus 151 ~~~~l~~~~~~~~~l~~~~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreL 227 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQAERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVV 227 (618)
T ss_dssp CC---------CEECBCCCCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHH
T ss_pred ccccccchHHHHHHHhhccccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHH
Confidence 666 7888888777766 5888999876 3 888889999999999999999553222222212245678999999988
Q ss_pred HHHHHHHHHHHHhCCcceeEEeeEeec-cCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHH
Q 007931 107 AVQAVASRVAEEMGVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLG 185 (584)
Q Consensus 107 a~~~~~~~~~~~~~~~vg~~vg~~~~~-~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~ 185 (584)
+.|.. +.+. + ..++|..+. +....+ ...+.++|.+.+.+.+..++.+.++++|||||||+++...+....
T Consensus 228 a~Qi~-~~l~---~----~~v~~~~~~l~~~~tp-~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~ 298 (618)
T 2whx_A 228 AAEME-EALR---G----LPIRYQTPAVKSDHTG-REIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARG 298 (618)
T ss_dssp HHHHH-HHTT---T----SCEEECCTTSSCCCCS-SSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHH
T ss_pred HHHHH-HHhc---C----CceeEecccceeccCC-CceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHH
Confidence 76533 3222 2 234455443 223334 678899999999999888888999999999999987555555555
Q ss_pred HHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHH
Q 007931 186 LLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (584)
Q Consensus 186 ~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (584)
.+.... .+++.|+|+||||++.. ...+... .+..+.++.. ++. ...... ..
T Consensus 299 ~i~~~l-~~~~~q~il~SAT~~~~-~~~~~~~----------------~~~~~~v~~~-~~~------~~~~~l----l~ 349 (618)
T 2whx_A 299 YISTRV-EMGEAAAIFMTATPPGS-TDPFPQS----------------NSPIEDIERE-IPE------RSWNTG----FD 349 (618)
T ss_dssp HHHHHH-HHTSCEEEEECSSCTTC-CCSSCCC----------------SSCEEEEECC-CCS------SCCSSS----CH
T ss_pred HHHHHh-cccCccEEEEECCCchh-hhhhhcc----------------CCceeeeccc-CCH------HHHHHH----HH
Confidence 554433 23689999999999443 1111111 1113333221 111 111111 11
Q ss_pred HHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCC
Q 007931 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (584)
Q Consensus 266 ~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~ 345 (584)
.+. ...+++||||+++++++.+++.|.+. ++.+..+||. +|.++++.|++|+++|||||+++
T Consensus 350 ~l~-----~~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~ 411 (618)
T 2whx_A 350 WIT-----DYQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDIS 411 (618)
T ss_dssp HHH-----HCCSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGG
T ss_pred HHH-----hCCCCEEEEECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHH
Confidence 111 13678999999999999999999875 6789999985 78889999999999999999999
Q ss_pred ccccccCCeEEEEecCCccceee--cCCCCcccceeeeccHHhHHHhccccCCCC--CcEEEEccC
Q 007931 346 ETSLTLEGIVYVVDSGFSKQRFY--NPISDIENLVVAPISKASARQRAGRAGRVR--PGKCYRLYT 407 (584)
Q Consensus 346 e~Gidip~v~~VId~g~~k~~~~--d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~--~G~~~~l~~ 407 (584)
++|||+| +++|||+|+.+.+.+ +...++......|.|.++|+||+|||||.+ +|.||.+++
T Consensus 412 ~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 412 EMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp GTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred HcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 9999998 999999999777665 444456566677999999999999999993 899999997
No 23
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.2e-38 Score=366.14 Aligned_cols=328 Identities=16% Similarity=0.168 Sum_probs=229.3
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHH--HHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHh-CCcc
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM-GVKV 123 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~--ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~-~~~v 123 (584)
..+++..+|.+++..+.++++++++||||||||+. ++.... ...++++|+++|++.|+.|. .+++.+.+ +..+
T Consensus 36 ~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~---~~~g~~vlvl~PtraLa~Q~-~~~l~~~~~~~~v 111 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA---HRNMTKTIYTSPIKALSNQK-FRDFKETFDDVNI 111 (997)
T ss_dssp CSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH---HHTTCEEEEEESCGGGHHHH-HHHHHTTC--CCE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH---HhcCCeEEEEeCCHHHHHHH-HHHHHHHcCCCeE
Confidence 34568999999999999999999999999999943 332222 23566789999999998864 44455544 5666
Q ss_pred eeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 124 g~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
+..+|... ... .++|+|+||++|.+.+..... +.++++||||||| +..+.++...+...+...+++.++|++
T Consensus 112 ~~l~G~~~-----~~~-~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlL 184 (997)
T 4a4z_A 112 GLITGDVQ-----INP-DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILL 184 (997)
T ss_dssp EEECSSCE-----ECT-TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEE
T ss_pred EEEeCCCc-----cCC-CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEE
Confidence 66666321 223 689999999999998876654 8899999999999 444433333333444456778999999
Q ss_pred eccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC--------c-----chH---------
Q 007931 203 SATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------V-----SDY--------- 259 (584)
Q Consensus 203 SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-----~~~--------- 259 (584)
|||+ +...|.+|++..... ...++..+.+..|++.++.... . ..+
T Consensus 185 SAT~~n~~ef~~~l~~~~~~------------~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (997)
T 4a4z_A 185 SATVPNTYEFANWIGRTKQK------------NIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNG 252 (997)
T ss_dssp ECCCTTHHHHHHHHHHHHTC------------CEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-
T ss_pred cCCCCChHHHHHHHhcccCC------------ceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhc
Confidence 9999 889999999753211 1113444445555443321100 0 000
Q ss_pred -------------------------------------------------------------------HHHHHHHHHHHHh
Q 007931 260 -------------------------------------------------------------------VQAAVSTVLLIHD 272 (584)
Q Consensus 260 -------------------------------------------------------------------~~~~~~~i~~~~~ 272 (584)
.......+.....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~ 332 (997)
T 4a4z_A 253 ESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLR 332 (997)
T ss_dssp ----------------------------------------------------------------CCCCTTHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 0011233444455
Q ss_pred cCCCCCEEEEeCcHHHHHHHHHHHHHHh--------------hhccC----------------CCCCeEEEEecCCCCHH
Q 007931 273 KEPPGDILVFLTGQDDIDATIQLLTEEA--------------RTSKK----------------NSSGLIILPLYSGLSRA 322 (584)
Q Consensus 273 ~~~~~~iLVF~~~~~~i~~l~~~L~~~~--------------~~~~~----------------~~~~~~v~~lh~~l~~~ 322 (584)
....+++||||+++++++.++..|.+.. ..... ......+.++||+|++.
T Consensus 333 ~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~ 412 (997)
T 4a4z_A 333 KRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPI 412 (997)
T ss_dssp HTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHH
Confidence 5567899999999999999998884310 00000 00022589999999999
Q ss_pred HHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CC
Q 007931 323 EQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RP 399 (584)
Q Consensus 323 ~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~ 399 (584)
+|..+++.|++|.++|||||+++++|||+|++.+|+ .+..+ ||+.. ..|+|..+|.||+|||||. ..
T Consensus 413 ~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~ 482 (997)
T 4a4z_A 413 VKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDST 482 (997)
T ss_dssp HHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSS
T ss_pred HHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-ecccc---ccCcc------CCCCCHHHHhHHhcccccCCCCcc
Confidence 999999999999999999999999999999955555 44433 55432 2388999999999999997 48
Q ss_pred cEEEEccC
Q 007931 400 GKCYRLYT 407 (584)
Q Consensus 400 G~~~~l~~ 407 (584)
|.||.++.
T Consensus 483 G~vi~l~~ 490 (997)
T 4a4z_A 483 GTVIVMAY 490 (997)
T ss_dssp EEEEEECC
T ss_pred eEEEEecC
Confidence 99999984
No 24
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.9e-38 Score=335.05 Aligned_cols=293 Identities=17% Similarity=0.218 Sum_probs=208.1
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHH-HHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccC
Q 007931 57 AILYLVETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED 135 (584)
Q Consensus 57 ~il~~l~~~~~viv~a~TGsGKT~~-ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~ 135 (584)
.|...+.++++++++||||||||+. ++.++. .....+.++++++|+|.|+.|.. +.+ + |..+++......
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~-~~~~~~~~~lvl~Ptr~La~Q~~-~~l----~---g~~v~~~~~~~~ 81 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVR-EALLRRLRTLILAPTRVVAAEME-EAL----R---GLPIRYQTPAVK 81 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHH-HHHHTTCCEEEEESSHHHHHHHH-HHT----T---TSCEEECCTTCS
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHH-HHHhcCCcEEEECCCHHHHHHHH-HHh----c---Cceeeeeecccc
Confidence 3555566777789999999999963 222222 22234567899999988776543 322 1 233445444332
Q ss_pred cCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHh
Q 007931 136 FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (584)
Q Consensus 136 ~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~ 215 (584)
........|.++|++.+.+.+.....+.++++|||||||+++...+....++... ...++.++|+||||++......++
T Consensus 82 ~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~ 160 (451)
T 2jlq_A 82 SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQ 160 (451)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCC
T ss_pred ccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhc
Confidence 2222267899999999999998888899999999999997755555555544332 245689999999999653222122
Q ss_pred hcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHH
Q 007931 216 HARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQL 295 (584)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~ 295 (584)
+.. .++.+. +..|... |.. ..++ + . ...+++||||+++++++.+++.
T Consensus 161 ~~~-----------------~~~~~~-~~~p~~~-~~~--~~~~-------l---~--~~~~~~lVF~~s~~~a~~l~~~ 207 (451)
T 2jlq_A 161 SNS-----------------PIEDIE-REIPERS-WNT--GFDW-------I---T--DYQGKTVWFVPSIKAGNDIANC 207 (451)
T ss_dssp CSS-----------------CEEEEE-CCCCSSC-CSS--SCHH-------H---H--HCCSCEEEECSSHHHHHHHHHH
T ss_pred CCC-----------------ceEecC-ccCCchh-hHH--HHHH-------H---H--hCCCCEEEEcCCHHHHHHHHHH
Confidence 111 133322 2222111 110 0111 1 1 1356899999999999999999
Q ss_pred HHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcc
Q 007931 296 LTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIE 375 (584)
Q Consensus 296 L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~ 375 (584)
|.+. ++.+..+||.+ +.++++.|++|+++|||||+++++|||+|+ ++|||+|+.+...|| ..+..
T Consensus 208 L~~~---------g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~ 272 (451)
T 2jlq_A 208 LRKS---------GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPE 272 (451)
T ss_dssp HHTT---------TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSC
T ss_pred HHHc---------CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccc
Confidence 9764 67888999975 457889999999999999999999999999 999999999999998 55666
Q ss_pred ccee---eeccHHhHHHhccccCCCC--CcEEEEccC
Q 007931 376 NLVV---APISKASARQRAGRAGRVR--PGKCYRLYT 407 (584)
Q Consensus 376 ~l~~---~~~s~~~~~QR~GRaGR~~--~G~~~~l~~ 407 (584)
.+.. .|.|.++|+||+|||||.+ +|.||.++.
T Consensus 273 ~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 273 RVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred eeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 6665 7999999999999999994 899988865
No 25
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.4e-37 Score=331.34 Aligned_cols=294 Identities=19% Similarity=0.213 Sum_probs=203.6
Q ss_pred HHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCc-C
Q 007931 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDF-T 137 (584)
Q Consensus 59 l~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~-~ 137 (584)
..++.++++++++||||||||++....++......+.++|+++|+|+|+.|. .+++. |. .+++....... .
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~-~~~l~---g~----~v~~~~~~~~~~~ 86 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEM-AEALR---GL----PVRYQTSAVQREH 86 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHH-HHHTT---TS----CEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHH-HHHhc---Cc----eEeEEecccccCC
Confidence 5567889999999999999996543333333233456789999998887763 33332 22 22332222111 1
Q ss_pred CCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhc
Q 007931 138 NKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (584)
Q Consensus 138 ~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~ 217 (584)
.+ ...+.++|.+.+.+.+..++.+.++++|||||||+++...+...+++..... .++.++|+||||++.+. ..+...
T Consensus 87 t~-~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~~~ 163 (459)
T 2z83_A 87 QG-NEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFPDS 163 (459)
T ss_dssp -C-CCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCC
T ss_pred CC-CcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhccC
Confidence 23 5678899999999999888889999999999999887777777777666543 46899999999995321 000000
Q ss_pred CCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHH
Q 007931 218 RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (584)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~ 297 (584)
..++..+.. ..+... ...... .+. ...+++||||+++++++.+++.|.
T Consensus 164 ----------------~~pi~~~~~-~~~~~~------~~~~~~----~l~-----~~~~~~LVF~~s~~~~~~l~~~L~ 211 (459)
T 2z83_A 164 ----------------NAPIHDLQD-EIPDRA------WSSGYE----WIT-----EYAGKTVWFVASVKMGNEIAMCLQ 211 (459)
T ss_dssp ----------------SSCEEEEEC-CCCSSC------CSSCCH----HHH-----HCCSCEEEECSCHHHHHHHHHHHH
T ss_pred ----------------CCCeEEecc-cCCcch------hHHHHH----HHH-----hcCCCEEEEeCChHHHHHHHHHHH
Confidence 111222211 111110 001011 111 136789999999999999999998
Q ss_pred HHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeec--CCCCcc
Q 007931 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYN--PISDIE 375 (584)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d--~~~~~~ 375 (584)
+. ++.+..+||. +|.++++.|++|+++|||||+++++|||+|+ ++|||+|..+.+.++ ....+.
T Consensus 212 ~~---------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~ 277 (459)
T 2z83_A 212 RA---------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVI 277 (459)
T ss_dssp HT---------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEE
T ss_pred hc---------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccc
Confidence 75 7789999985 7889999999999999999999999999999 999999988877765 222222
Q ss_pred cceeeeccHHhHHHhccccCCC-C-CcEEEEccChH
Q 007931 376 NLVVAPISKASARQRAGRAGRV-R-PGKCYRLYTEE 409 (584)
Q Consensus 376 ~l~~~~~s~~~~~QR~GRaGR~-~-~G~~~~l~~~~ 409 (584)
.+...|.|.++|+||+|||||. . +|.||.++++.
T Consensus 278 ~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 278 LGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 2234799999999999999999 3 89999999875
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-37 Score=354.24 Aligned_cols=334 Identities=17% Similarity=0.158 Sum_probs=229.0
Q ss_pred HHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcc
Q 007931 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (584)
Q Consensus 44 ~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~v 123 (584)
.......++.+|.+++.++.++++++|+||||||||+.....+... ...+.++||++|+++|+.|. .+.+.+.++ .+
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL~l~PtkaLa~Q~-~~~l~~~~~-~v 156 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQK-YRELLAEFG-DV 156 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHH-HHHHHHHHS-CE
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-hccCCeEEEECChHHHHHHH-HHHHHHHhC-CE
Confidence 3344566899999999999999999999999999996544333322 33567889999999988864 445555555 56
Q ss_pred eeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCC-CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 124 g~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
|..+|... ... ..+|+|+||++|.+.+..+. .+.++++|||||+|. ..+.+....+-..+...+++.++|+|
T Consensus 157 glltGd~~-----~~~-~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~-l~d~~rg~~~e~il~~l~~~~~il~L 229 (1010)
T 2xgj_A 157 GLMTGDIT-----INP-DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY-MRDKERGVVWEETIILLPDKVRYVFL 229 (1010)
T ss_dssp EEECSSCE-----ECT-TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEeCCCc-----cCC-CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh-hcccchhHHHHHHHHhcCCCCeEEEE
Confidence 65555221 122 67899999999998876654 489999999999993 22221111111222335678999999
Q ss_pred eccc-ChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC----------cc-----hHH------
Q 007931 203 SATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP----------VS-----DYV------ 260 (584)
Q Consensus 203 SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~-----~~~------ 260 (584)
|||+ +...+++|++..... ...++..+.+..|++.++.... .. ++.
T Consensus 230 SATi~n~~e~a~~l~~~~~~------------~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (1010)
T 2xgj_A 230 SATIPNAMEFAEWICKIHSQ------------PCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 297 (1010)
T ss_dssp ECCCTTHHHHHHHHHHHHTS------------CEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHhhcCC------------CeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHH
Confidence 9999 888899998642110 0113333444444443322110 00 000
Q ss_pred ------------------------------HHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhh---------
Q 007931 261 ------------------------------QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEAR--------- 301 (584)
Q Consensus 261 ------------------------------~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~--------- 301 (584)
...+..+.........+++||||+++..++.+++.|.....
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 298 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp C------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 11122233333334556899999999999999988854100
Q ss_pred ---------hccCCC------------CCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEec
Q 007931 302 ---------TSKKNS------------SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDS 360 (584)
Q Consensus 302 ---------~~~~~~------------~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~ 360 (584)
.+.... ....|.+|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+.
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~ 457 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 457 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC
Confidence 000000 01248999999999999999999999999999999999999999999999973
Q ss_pred CCccceeecCCCCcccceeeeccHHhHHHhccccCCCC---CcEEEEccChH
Q 007931 361 GFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYTEE 409 (584)
Q Consensus 361 g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~ 409 (584)
...||... ..|.|..+|.||+|||||.+ .|.||.++++.
T Consensus 458 ----~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 458 ----VRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp ----SEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred ----CcccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 23355432 23889999999999999994 59999999743
No 27
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1e-37 Score=351.11 Aligned_cols=364 Identities=16% Similarity=0.177 Sum_probs=195.0
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcC----ccCCCeEEEEeCchHHHHHHHH--HHHHHHhCCc
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG----WADGGRVIACTQPRRLAVQAVA--SRVAEEMGVK 122 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~----~~~~~~~I~v~~~r~la~~~~~--~~~~~~~~~~ 122 (584)
...+.+|.+++.++..++++|+++|||||||.+....+++.. ...++++|+++|++.|+.|... +++....+..
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 91 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYR 91 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCce
Confidence 345789999999998999999999999999965554444321 1123678999999999886432 2222233667
Q ss_pred ceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCCC--CCCCcEEEEeCCCcCccchhHHHHHHHHHHH------h
Q 007931 123 VGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQR------C 193 (584)
Q Consensus 123 vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~------~ 193 (584)
++..+|........ ......+|+|+||++|++.+..+.. +.++++|||||||+..-...+ ..++..... .
T Consensus 92 v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~-~~i~~~~l~~~~~~~~ 170 (696)
T 2ykg_A 92 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY-NMIMFNYLDQKLGGSS 170 (696)
T ss_dssp EEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH-HHHHHHHHHHHHTTCC
T ss_pred EEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH-HHHHHHHHHHhhcccC
Confidence 76666632211110 0012589999999999999877643 788999999999965533332 222222222 1
Q ss_pred cCCceEEEEecccC-------hHHHH---HHhhcCCCC---CCCcccc-cCC-CCCCeE--EEECCccc-------c---
Q 007931 194 RSDLRLIISSATIE-------AKSMS---AFFHARKGR---RGLEGVE-LVP-RLEPAI--LSVEGRGF-------N--- 246 (584)
Q Consensus 194 ~~~~~vi~~SAT~~-------~~~~~---~~~~~~~~~---~~~~~~~-~~~-~~~~~~--~~~~~~~~-------~--- 246 (584)
.+..++|+||||+. .+.+. +++...... ....... ... ...+.. ...+.+.. +
T Consensus 171 ~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~ 250 (696)
T 2ykg_A 171 GPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 250 (696)
T ss_dssp SCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHH
Confidence 46789999999996 22222 222211000 0000000 000 000000 00000000 0
Q ss_pred --ce---EEecC--------------------------------------------------------------------
Q 007931 247 --VQ---IHYVE-------------------------------------------------------------------- 253 (584)
Q Consensus 247 --v~---~~~~~-------------------------------------------------------------------- 253 (584)
++ ..+..
T Consensus 251 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~ 330 (696)
T 2ykg_A 251 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 330 (696)
T ss_dssp HHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhh
Confidence 00 00000
Q ss_pred --------------------C-------------------------CcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHH
Q 007931 254 --------------------E-------------------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD 288 (584)
Q Consensus 254 --------------------~-------------------------~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~ 288 (584)
. ............+.......+++++||||+++.+
T Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~ 410 (696)
T 2ykg_A 331 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 410 (696)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHH
Confidence 0 0011111122222222223466889999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEe--------cCCCCHHHHhcccCCCCC-CCcEEEEeCCCCccccccCCeEEEEe
Q 007931 289 IDATIQLLTEEARTSKKNSSGLIILPL--------YSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVD 359 (584)
Q Consensus 289 i~~l~~~L~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~i~~~~~~-g~~~vlvaT~i~e~Gidip~v~~VId 359 (584)
++.+++.|.+.. ....+.+..+ ||+|++++|.++++.|++ |.++|||||+++++|||+|++++||+
T Consensus 411 ~~~l~~~L~~~~-----~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 411 VDALKNWIEGNP-----KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 485 (696)
T ss_dssp HHHHHHHHHHCT-----TCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEE
T ss_pred HHHHHHHHHhCC-----CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE
Confidence 999999998741 0112566666 669999999999999998 99999999999999999999999999
Q ss_pred cCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhh---------hCCCCCCCcccccchhH
Q 007931 360 SGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK---------EIPAEGIPEMQRSNLVS 430 (584)
Q Consensus 360 ~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~---------~~~~~~~pei~r~~l~~ 430 (584)
+++ |.|..+|+||+|| ||.++|.||.++++.+... .+.....|++.+.+...
T Consensus 486 ~d~------------------p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 546 (696)
T 2ykg_A 486 YEY------------------VGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 546 (696)
T ss_dssp ESC------------------C--CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred eCC------------------CCCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Confidence 777 6778888999999 9999999999999776621 13344556666666666
Q ss_pred HHHHHHh
Q 007931 431 CVIQLKA 437 (584)
Q Consensus 431 ~~L~l~~ 437 (584)
++.+++.
T Consensus 547 ~~~~i~~ 553 (696)
T 2ykg_A 547 FREKILH 553 (696)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.6e-37 Score=315.49 Aligned_cols=299 Identities=19% Similarity=0.238 Sum_probs=212.0
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHH---HhCCccee
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE---EMGVKVGE 125 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~---~~~~~vg~ 125 (584)
-..+.+|.+++..+.+++++++++|||||||......++.. +.++++++|++.|+.|. .+++.+ ..+..++.
T Consensus 15 ~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~-~~~~~~~~~~~~~~~~~ 89 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQV-ASHIRDIGRYMDTKVAE 89 (337)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHH-HHHHHHHTTTSCCCEEE
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHH-HHHHHHHhhhcCCcEEE
Confidence 35678898999999999999999999999996655555543 45689999999888763 333333 33455554
Q ss_pred EEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
..|.....+........+|+|+||+.|.+.+..... +.++++||+||||. .....+...+...+.......++++|||
T Consensus 90 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA 168 (337)
T 2z0m_A 90 VYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADL-MFEMGFIDDIKIILAQTSNRKITGLFSA 168 (337)
T ss_dssp ECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHH-HHHTTCHHHHHHHHHHCTTCSEEEEEES
T ss_pred EECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHH-hhccccHHHHHHHHhhCCcccEEEEEeC
Confidence 444221111111111478999999999998876554 78899999999993 2222222222233334556778899999
Q ss_pred ccChH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEE
Q 007931 205 TIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILV 281 (584)
Q Consensus 205 T~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLV 281 (584)
|++.. .+..++.... .+.......++...+....... ... ........++++||
T Consensus 169 T~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~lv 225 (337)
T 2z0m_A 169 TIPEEIRKVVKDFITNYE-----------------EIEACIGLANVEHKFVHVKDDW--RSK----VQALRENKDKGVIV 225 (337)
T ss_dssp CCCHHHHHHHHHHSCSCE-----------------EEECSGGGGGEEEEEEECSSSS--HHH----HHHHHTCCCSSEEE
T ss_pred cCCHHHHHHHHHhcCCce-----------------eeecccccCCceEEEEEeChHH--HHH----HHHHHhCCCCcEEE
Confidence 99554 3444544322 2222222223333332222111 111 12334456788999
Q ss_pred EeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecC
Q 007931 282 FLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSG 361 (584)
Q Consensus 282 F~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g 361 (584)
||+++++++.+++.|. .+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 226 f~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 226 FVRTRNRVAKLVRLFD-------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp ECSCHHHHHHHHTTCT-------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred EEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 9999999999887763 367899999999999999999999999999999999999999999999988
Q ss_pred CccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccC
Q 007931 362 FSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (584)
Q Consensus 362 ~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (584)
. |.|..+|.||+|||||. ++|.|+.++.
T Consensus 293 ~------------------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 293 A------------------PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp C------------------CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred C------------------CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 7 88999999999999999 8899998887
No 29
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-38 Score=337.79 Aligned_cols=317 Identities=17% Similarity=0.216 Sum_probs=196.0
Q ss_pred chHHHHHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHHhcCcc--CCCeEEEEeCchHHHHHHHHHHHHHHhCC-ccee
Q 007931 51 VYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRRLAVQAVASRVAEEMGV-KVGE 125 (584)
Q Consensus 51 ~~~~~~~il~~l~~~--~~viv~a~TGsGKT~~ip~~l~~~~~~--~~~~~I~v~~~r~la~~~~~~~~~~~~~~-~vg~ 125 (584)
.+.+|.+++..+.++ +++++++|||||||......++..... .++++++++|++.|+.| +.+++.+..+. .+..
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q-~~~~~~~~~~~~~~~~ 220 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQ-IMDVVTEMGKYTEVKT 220 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHH-HHHHHHHHSTTSSCCE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHH-HHHHHHHhCCccCeeE
Confidence 345566667777776 899999999999996655444443222 24478899998888865 44555544322 2222
Q ss_pred EEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
..++.......... ..+|+|+||+.+.+.+..... +.++++|||||+|.......+...+.+......++.++|+|||
T Consensus 221 ~~~~~~~~~~~~~~-~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSA 299 (508)
T 3fho_A 221 AFGIKDSVPKGAKI-DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299 (508)
T ss_dssp EC----------CC-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEEeCCcccccccC-CCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeC
Confidence 22222222222222 689999999999998877665 8999999999999544323333333334444567899999999
Q ss_pred ccC--hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccc---cceEEecCCCcchHHHHHHHHHHHHHhcCCCCCE
Q 007931 205 TIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDI 279 (584)
Q Consensus 205 T~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 279 (584)
|++ .+.+...+...+. .+.+..... .+...+...... ......+..+......+++
T Consensus 300 T~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~ 360 (508)
T 3fho_A 300 TFSERVEKYAERFAPNAN----------------EIRLKTEELSVEGIKQLYMDCQSE---EHKYNVLVELYGLLTIGQS 360 (508)
T ss_dssp CCSTHHHHHHHHHSTTCE----------------EECCCCCC----CCCCEEEEC--C---HHHHHHHHHHHC---CCCE
T ss_pred CCCHHHHHHHHHhcCCCe----------------EEEeccccCCcccceEEEEECCch---HHHHHHHHHHHHhcCCCcE
Confidence 995 4555555544331 111111111 111122211111 1223344455555567899
Q ss_pred EEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEe
Q 007931 280 LVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVD 359 (584)
Q Consensus 280 LVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId 359 (584)
||||+++++++.+++.|.+. +..+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+
T Consensus 361 LVF~~s~~~a~~l~~~L~~~---------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 361 IIFCKKKDTAEEIARRMTAD---------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp EEBCSSTTTTTHHHHHHTTT---------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred EEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 99999999999999998653 678999999999999999999999999999999999999999999999998
Q ss_pred cCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 360 SGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 360 ~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
++..... ....|..+|.||+|||||. .+|.|+.++++.
T Consensus 432 ~~~p~~~------------~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 432 YDMPLDQ------------AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp ----CC-----------------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred ECCCCcc------------cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 7761100 0026788999999999999 789999999853
No 30
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.5e-36 Score=333.16 Aligned_cols=335 Identities=16% Similarity=0.207 Sum_probs=221.0
Q ss_pred CCccchhhHHHHhcCCCchHHHHHHHHHHh--cCCEEEEEcCCCChHH--HHHHHH--HHhcCcc--CCCeEEEEeCchH
Q 007931 34 SIGYGYASIEKQRQRLPVYKYRTAILYLVE--THATTIIVGETGSGKT--TQIPQY--LKEAGWA--DGGRVIACTQPRR 105 (584)
Q Consensus 34 ~~~~~~~~l~~~~~~lP~~~~~~~il~~l~--~~~~viv~a~TGsGKT--~~ip~~--l~~~~~~--~~~~~I~v~~~r~ 105 (584)
+++.....+.+.... ..+.+|.+++..+. .+++++++|||||||| +++|.+ +...... .+.++|+++|+++
T Consensus 79 l~~~l~~~l~~~g~~-~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFP-GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCS-SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCC-CCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 666666666444332 35667777777777 5789999999999999 444533 2222111 1346899999999
Q ss_pred HHHHHHHHHHHHH----hCC---cceeEEeeEee---ccCcCCCCCceEEEechHHHHHHHccC--CCCCCCcEEEEeCC
Q 007931 106 LAVQAVASRVAEE----MGV---KVGEEVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEA 173 (584)
Q Consensus 106 la~~~~~~~~~~~----~~~---~vg~~vg~~~~---~~~~~~~~~~~I~~~T~~~ll~~l~~~--~~l~~~~~iIiDE~ 173 (584)
|+.|.. +.+.+. .+. .+...+|.... ....... .++|+|+||+.|+..+... ..+.++++||||||
T Consensus 158 La~Q~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 158 LALQIE-AEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL-RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHH-HHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHH-CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHH-HHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcC-CCCEEEECcHHHHHHHHhccccccccceEEEEeCH
Confidence 988633 222221 122 22222221110 0001112 5789999999999887653 23788999999999
Q ss_pred CcCccch---hHHHHHHHHHHHh----cCCceEEEEecccCh--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC--
Q 007931 174 HERSIST---DILLGLLKKIQRC----RSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-- 242 (584)
Q Consensus 174 Her~~~~---d~l~~~l~~~~~~----~~~~~vi~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 242 (584)
|. ..+. ..+..++..+... .++.|+++||||++. ..+..++...+. .+.+..
T Consensus 236 h~-l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~----------------~~~~~~~~ 298 (563)
T 3i5x_A 236 DR-LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE----------------CLFLDTVD 298 (563)
T ss_dssp HH-HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSE----------------EEEEESSC
T ss_pred HH-HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCc----------------eEEEeccC
Confidence 93 2222 2233333333332 347899999999953 344433332220 111100
Q ss_pred -----ccccceEEec-CCCcchHHHHHHHHHHH-HHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEe
Q 007931 243 -----RGFNVQIHYV-EEPVSDYVQAAVSTVLL-IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPL 315 (584)
Q Consensus 243 -----~~~~v~~~~~-~~~~~~~~~~~~~~i~~-~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (584)
....+...+. .....+........+.. +......+++||||++++.++.+++.|.+... .++.+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~v~~~ 372 (563)
T 3i5x_A 299 KNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEF 372 (563)
T ss_dssp SSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT------TTSCEEEE
T ss_pred CCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------CCceEEEe
Confidence 0011111111 11112222223333333 33335678899999999999999999988742 26789999
Q ss_pred cCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccC
Q 007931 316 YSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAG 395 (584)
Q Consensus 316 h~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaG 395 (584)
||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||+++. |.|..+|+||+||||
T Consensus 373 h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRag 434 (563)
T 3i5x_A 373 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTA 434 (563)
T ss_dssp STTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSS
T ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECC------------------CCchhhhhhhcCccc
Confidence 99999999999999999999999999999999999999999999887 889999999999999
Q ss_pred CC-CCcEEEEccChHHHh
Q 007931 396 RV-RPGKCYRLYTEEYFV 412 (584)
Q Consensus 396 R~-~~G~~~~l~~~~~~~ 412 (584)
|. .+|.|+.++++.+..
T Consensus 435 R~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 435 RSGKEGSSVLFICKDELP 452 (563)
T ss_dssp CTTCCEEEEEEEEGGGHH
T ss_pred cCCCCceEEEEEchhHHH
Confidence 99 789999999876543
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.4e-36 Score=333.94 Aligned_cols=340 Identities=16% Similarity=0.193 Sum_probs=223.4
Q ss_pred ccCCCC----CCccchhhHHHHhcCCCchHHHHHHHHHHh--cCCEEEEEcCCCChHH--HHHHHHHH--hcCc--cCCC
Q 007931 28 SLSSAS----SIGYGYASIEKQRQRLPVYKYRTAILYLVE--THATTIIVGETGSGKT--TQIPQYLK--EAGW--ADGG 95 (584)
Q Consensus 28 ~~~~l~----~~~~~~~~l~~~~~~lP~~~~~~~il~~l~--~~~~viv~a~TGsGKT--~~ip~~l~--~~~~--~~~~ 95 (584)
+|.++. ++......+.+....- .+.+|.+++..+. .+++++++|||||||| +++|.+.. .... ..+.
T Consensus 18 ~~~~l~~~~~l~~~l~~~l~~~g~~~-~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 96 (579)
T 3sqw_A 18 TLDSLLEEGVLDKEIHKAITRMEFPG-LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 96 (579)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTTCSS-CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCC-CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC
Confidence 455544 7776666665443333 5667777777776 6789999999999999 45554322 2211 1234
Q ss_pred eEEEEeCchHHHHHHHHHHHHHHh----C---CcceeEEeeEeec---cCcCCCCCceEEEechHHHHHHHccC--CCCC
Q 007931 96 RVIACTQPRRLAVQAVASRVAEEM----G---VKVGEEVGYTIRF---EDFTNKDLTAIKFLTDGVLLREMMDD--PLLT 163 (584)
Q Consensus 96 ~~I~v~~~r~la~~~~~~~~~~~~----~---~~vg~~vg~~~~~---~~~~~~~~~~I~~~T~~~ll~~l~~~--~~l~ 163 (584)
++|+++|+++|+.|. .+.+.+.. + ..+...+|..... ...... .++|+|+||++|++.+... ..+.
T Consensus 97 ~~lvl~Ptr~La~Q~-~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 97 KAVIVAPTRDLALQI-EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL-RPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp CEEEECSSHHHHHHH-HHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHH-CCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred eEEEEcchHHHHHHH-HHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcC-CCCEEEECHHHHHHHHHhccccccc
Confidence 689999999998763 33333221 2 2222222211100 000011 5789999999999887653 2488
Q ss_pred CCcEEEEeCCCcCccch---hHHHHHHHHHHHhc----CCceEEEEecccCh--HHHHHHhhcCCCCCCCcccccCCCCC
Q 007931 164 KYSVIMVDEAHERSIST---DILLGLLKKIQRCR----SDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLE 234 (584)
Q Consensus 164 ~~~~iIiDE~Her~~~~---d~l~~~l~~~~~~~----~~~~vi~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (584)
++++|||||||+ ..+. +.+..++..+.... ++.++++||||++. ..+...+...+.
T Consensus 175 ~~~~lViDEah~-l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~-------------- 239 (579)
T 3sqw_A 175 FVDYKVLDEADR-LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE-------------- 239 (579)
T ss_dssp TCCEEEEETHHH-HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSE--------------
T ss_pred cCCEEEEEChHH-hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCc--------------
Confidence 999999999994 2222 22333333333322 37899999999954 333333322210
Q ss_pred CeEEEECC-------ccccceEEec-CCCcchHHHHHHHHHHHH-HhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccC
Q 007931 235 PAILSVEG-------RGFNVQIHYV-EEPVSDYVQAAVSTVLLI-HDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK 305 (584)
Q Consensus 235 ~~~~~~~~-------~~~~v~~~~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~ 305 (584)
.+.+.. ....+...+. ..............+... ......+++||||+++.+++.+++.|.+...
T Consensus 240 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~---- 313 (579)
T 3sqw_A 240 --CLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK---- 313 (579)
T ss_dssp --EEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT----
T ss_pred --eEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc----
Confidence 111110 0011111111 111122222333333333 3335678899999999999999999988742
Q ss_pred CCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHH
Q 007931 306 NSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKA 385 (584)
Q Consensus 306 ~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~ 385 (584)
.++.+..+||+|++++|.++++.|++|..+|||||+++++|||+|++++||+++. |.|..
T Consensus 314 --~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~------------------p~s~~ 373 (579)
T 3sqw_A 314 --KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELA 373 (579)
T ss_dssp --TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTT
T ss_pred --CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCC------------------CCCHH
Confidence 2678999999999999999999999999999999999999999999999999887 88999
Q ss_pred hHHHhccccCCC-CCcEEEEccChHHH
Q 007931 386 SARQRAGRAGRV-RPGKCYRLYTEEYF 411 (584)
Q Consensus 386 ~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (584)
+|+||+|||||. .+|.|+.++++.+.
T Consensus 374 ~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 374 NYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred HhhhhccccccCCCCceEEEEEcccHH
Confidence 999999999999 78999999987653
No 32
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.3e-36 Score=334.07 Aligned_cols=314 Identities=18% Similarity=0.152 Sum_probs=218.3
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCc
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~ 142 (584)
.++++++++||||||||+.+.+.+... +..++++|+|.|+.| +++++ +..|..++..+|......... ....
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~~-----~~gl~l~PtR~LA~Q-i~~~l-~~~g~~v~lltG~~~~iv~Tp-Gr~~ 224 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFSA-----KSGVYCGPLKLLAHE-IFEKS-NAAGVPCDLVTGEERVTVQPN-GKQA 224 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHS-----SSEEEEESSHHHHHH-HHHHH-HHTTCCEEEECSSCEECCSTT-CCCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-----CCeEEEeCHHHHHHH-HHHHH-HhcCCcEEEEECCeeEEecCC-Cccc
Confidence 367899999999999998776666554 234888888887765 44444 345888887777544422111 1247
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhc-CCceEEEEeccc-ChHHHHHHhhcCCC
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATI-EAKSMSAFFHARKG 220 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~-~~~~vi~~SAT~-~~~~~~~~~~~~~~ 220 (584)
+++++|++.+. ....+++|||||+|++ .+.++...+...+.... .+.+++++|||. ....+....+...
T Consensus 225 ~il~~T~e~~~-------l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~- 295 (677)
T 3rc3_A 225 SHVSCTVEMCS-------VTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEV- 295 (677)
T ss_dssp SEEEEEGGGCC-------SSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCE-
T ss_pred ceeEecHhHhh-------hcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCce-
Confidence 88899986542 3577899999999954 55555555555555554 678999999996 2333333332211
Q ss_pred CCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHh
Q 007931 221 RRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEA 300 (584)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~ 300 (584)
.+....+..+ ..+........ ..... .-+|||+++++++.+++.|.+.
T Consensus 296 ----------------~v~~~~r~~~--l~~~~~~l~~l------------~~~~~-g~iIf~~s~~~ie~la~~L~~~- 343 (677)
T 3rc3_A 296 ----------------EVRDYKRLTP--ISVLDHALESL------------DNLRP-GDCIVCFSKNDIYSVSRQIEIR- 343 (677)
T ss_dssp ----------------EEEECCCSSC--EEECSSCCCSG------------GGCCT-TEEEECSSHHHHHHHHHHHHHT-
T ss_pred ----------------EEEEeeecch--HHHHHHHHHHH------------HhcCC-CCEEEEcCHHHHHHHHHHHHhc-
Confidence 1111112222 22221111110 11123 3478899999999999999874
Q ss_pred hhccCCCCCeEEEEecCCCCHHHHhcccCCCCC--CCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccce
Q 007931 301 RTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR--GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLV 378 (584)
Q Consensus 301 ~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~--g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~ 378 (584)
++.+.++||+|++++|.++++.|++ |.++|||||+++++|||+ ++++||++|+.|. .||+..+. .
T Consensus 344 --------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~-~-- 410 (677)
T 3rc3_A 344 --------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER-E-- 410 (677)
T ss_dssp --------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--------------
T ss_pred --------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc-c--
Confidence 6889999999999999999999988 899999999999999999 8999999999887 78877443 2
Q ss_pred eeeccHHhHHHhccccCCCC----CcEEEEccChH--HHhhhCCCCCCCcccccchhHHHHHHHhcC
Q 007931 379 VAPISKASARQRAGRAGRVR----PGKCYRLYTEE--YFVKEIPAEGIPEMQRSNLVSCVIQLKALG 439 (584)
Q Consensus 379 ~~~~s~~~~~QR~GRaGR~~----~G~~~~l~~~~--~~~~~~~~~~~pei~r~~l~~~~L~l~~~~ 439 (584)
..|+|.++|.||+|||||.+ +|.||++++++ .+.. +.....|++.+.++....++++.++
T Consensus 411 ~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~-~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 411 LEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKE-ILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp -CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHH-HHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred cccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHH-HHhcCcchhhhccCCChHHHHHHHh
Confidence 34999999999999999994 58999999877 5555 6777888999987777777777654
No 33
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-35 Score=319.08 Aligned_cols=336 Identities=18% Similarity=0.171 Sum_probs=224.4
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCC---cce
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---KVG 124 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~---~vg 124 (584)
.++++.+|.+++..+.++ .+++.+|||+|||.++..++.......++++++++|++.|+.+ +.+.+.+..+. .++
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q-~~~~~~~~~~~~~~~v~ 84 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQ-HAESFRRLFNLPPEKIV 84 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHH-HHHHHHHHBCSCGGGEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHH-HHHHHHHHhCcchhheE
Confidence 357889999999999888 8999999999999777666554432345678888888888764 55566666665 555
Q ss_pred eEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
...|.....+........+|+|+|++.+.+.+..... +.++++||+||||. ..+......+.+.+....+..++++||
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~~~~~~~~~~~~~~~~~~~~~l~lT 163 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR-AVGNYAYVFIAREYKRQAKNPLVIGLT 163 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGG-CSTTCHHHHHHHHHHHHCSSCCEEEEE
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcc-cCCCCcHHHHHHHHHhcCCCCeEEEEe
Confidence 5555322111111111578999999999998876654 88999999999994 333333444555555567788999999
Q ss_pred cccC--hHHHHHHhhcCCCCCCCccc-------ccCCCCCCeEEEEC--Cccccce----------------EEec----
Q 007931 204 ATIE--AKSMSAFFHARKGRRGLEGV-------ELVPRLEPAILSVE--GRGFNVQ----------------IHYV---- 252 (584)
Q Consensus 204 AT~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~v~----------------~~~~---- 252 (584)
||+. .+.+.+++............ .............. .....+. ..+.
T Consensus 164 aTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
T 1wp9_A 164 ASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS 243 (494)
T ss_dssp SCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 9993 55565555432211000000 00000000000000 0000000 0000
Q ss_pred C-------------------C-----------------------------------------------------------
Q 007931 253 E-------------------E----------------------------------------------------------- 254 (584)
Q Consensus 253 ~-------------------~----------------------------------------------------------- 254 (584)
. .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (494)
T 1wp9_A 244 PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDK 323 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSH
T ss_pred CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhH
Confidence 0 0
Q ss_pred ----------------CcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecC-
Q 007931 255 ----------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYS- 317 (584)
Q Consensus 255 ----------------~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~- 317 (584)
............+........++++||||+++..++.+++.|.+. ++.+..+||
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~ 394 (494)
T 1wp9_A 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCS
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEecc
Confidence 000011111222222222256789999999999999999999875 778999999
Q ss_pred -------CCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHh
Q 007931 318 -------GLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQR 390 (584)
Q Consensus 318 -------~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR 390 (584)
+++.++|.++++.|++|..+|||||+++++|+|+|++++||.++. |.+...|.||
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~------------------~~~~~~~~Qr 456 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP------------------VPSAIRSIQR 456 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC------------------CHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC------------------CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999877 7899999999
Q ss_pred ccccCCCCCcEEEEccChHHHhh
Q 007931 391 AGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 391 ~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
+|||||.++|.+|+++++...+.
T Consensus 457 ~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 457 RGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp HTTSCSCCCSEEEEEEETTSHHH
T ss_pred HhhccCCCCceEEEEEecCCHHH
Confidence 99999998899999999765544
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.2e-35 Score=323.36 Aligned_cols=346 Identities=16% Similarity=0.149 Sum_probs=171.7
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc----cCCCeEEEEeCchHHHHHHH--HHHHHHHhCC
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAV--ASRVAEEMGV 121 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~----~~~~~~I~v~~~r~la~~~~--~~~~~~~~~~ 121 (584)
.+..+.+|.+++..+.+++++++++|||||||.+....+..... ..++++++++|++.|+.|.. .+.+....+.
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 45677889999999988999999999999999443333322211 11567899999999988633 3334444577
Q ss_pred cceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCC--CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHh-----
Q 007931 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (584)
Q Consensus 122 ~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~----- 193 (584)
.++...|........ ......+|+|+||+.|.+.+.... .+.++++||+||||... .......++......
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~-~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT-GNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCS-TTSHHHHHHHHHHHHHHCC-
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccC-CcchHHHHHHHHHHhhhccc
Confidence 777666643221111 011157899999999999987764 48899999999999543 333344444443332
Q ss_pred cCCceEEEEecccC---hHHHHHH----------hhcCCCCCCCcc-cc---cCCCCCCeEEEECCcc------------
Q 007931 194 RSDLRLIISSATIE---AKSMSAF----------FHARKGRRGLEG-VE---LVPRLEPAILSVEGRG------------ 244 (584)
Q Consensus 194 ~~~~~vi~~SAT~~---~~~~~~~----------~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~------------ 244 (584)
.+..++++||||+. ...+.+| ++.......... .. ................
T Consensus 164 ~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (556)
T 4a2p_A 164 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 243 (556)
T ss_dssp --CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHH
Confidence 46789999999992 2222222 221100000000 00 0000000000111000
Q ss_pred -----------------------ccceEE--ec------------C----------------------------------
Q 007931 245 -----------------------FNVQIH--YV------------E---------------------------------- 253 (584)
Q Consensus 245 -----------------------~~v~~~--~~------------~---------------------------------- 253 (584)
+....+ +. .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (556)
T 4a2p_A 244 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 323 (556)
T ss_dssp HHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 000000 00 0
Q ss_pred --------------------------------------------CCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHH
Q 007931 254 --------------------------------------------EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDI 289 (584)
Q Consensus 254 --------------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i 289 (584)
.............+........++++||||+++..+
T Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~ 403 (556)
T 4a2p_A 324 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 403 (556)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHH
Confidence 000001111111222222225678999999999999
Q ss_pred HHHHHHHHHHhhhcc---CCCCCeEEEEecCCCCHHHHhcccCCCCC-CCcEEEEeCCCCccccccCCeEEEEecCCccc
Q 007931 290 DATIQLLTEEARTSK---KNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (584)
Q Consensus 290 ~~l~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~i~~~~~~-g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~ 365 (584)
+.+++.|.+...... ....+.....+||+|++++|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 404 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~--- 480 (556)
T 4a2p_A 404 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 480 (556)
T ss_dssp HHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC---
T ss_pred HHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC---
Confidence 999999865310000 00113455667899999999999999999 99999999999999999999999999877
Q ss_pred eeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 366 RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 366 ~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
|.|..+|+||+|| ||.++|.||.|+++...+.
T Consensus 481 ---------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 481 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 512 (556)
T ss_dssp ---------------CSCHHHHHHC---------CCEEEEESCHHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCceEEEEEeCcchHH
Confidence 8899999999999 9999999999999877654
No 35
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5e-35 Score=309.73 Aligned_cols=290 Identities=20% Similarity=0.221 Sum_probs=194.2
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeecc-CcCCC
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE-DFTNK 139 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~-~~~~~ 139 (584)
++.++++++++||||||||..+...++......+.++++++|++.|+.|.. +.+. +.. +++....- ...++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~-~~l~---~~~----v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMK-EAFH---GLD----VKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHH-HHTT---TSC----EEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHH-HHHh---cCC----eEEecccceeccCC
Confidence 456789999999999999955322233222234567899999998877643 2222 222 23332221 12233
Q ss_pred CCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCC
Q 007931 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (584)
Q Consensus 140 ~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~ 219 (584)
..-+.+.+.+.+...+.....+.++++|||||+|..+...+....++..+.. ..+.++++||||++... ..+...
T Consensus 76 -~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~-~~~~~~-- 150 (440)
T 1yks_A 76 -REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGTS-DEFPHS-- 150 (440)
T ss_dssp -SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCC--
T ss_pred -ccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCchh-hhhhhc--
Confidence 4556677778888788777779999999999999765555555566655543 46799999999994431 111100
Q ss_pred CCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHH
Q 007931 220 GRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE 299 (584)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~ 299 (584)
..++..+. ..+.......... .+. ..++++||||+++++++.+++.|.+.
T Consensus 151 --------------~~~~~~~~-------~~~~~~~~~~~~~----~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 151 --------------NGEIEDVQ-------TDIPSEPWNTGHD----WIL-----ADKRPTAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp --------------SSCEEEEE-------CCCCSSCCSSSCH----HHH-----HCCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred --------------CCCeeEee-------eccChHHHHHHHH----HHH-----hcCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 00011111 1111111111111 111 13678999999999999999999875
Q ss_pred hhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceee-cCCCCcccce
Q 007931 300 ARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFY-NPISDIENLV 378 (584)
Q Consensus 300 ~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~-d~~~~~~~l~ 378 (584)
++.+..+|| ++|.++++.|++|+.+|||||+++++|||+| +++||++|+.+.+.| +...++....
T Consensus 201 ---------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~ 266 (440)
T 1yks_A 201 ---------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKG 266 (440)
T ss_dssp ---------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEE
T ss_pred ---------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecc
Confidence 678999999 4788999999999999999999999999999 999999999888776 4444565566
Q ss_pred eeeccHHhHHHhccccCCC--CCcEEEEccC
Q 007931 379 VAPISKASARQRAGRAGRV--RPGKCYRLYT 407 (584)
Q Consensus 379 ~~~~s~~~~~QR~GRaGR~--~~G~~~~l~~ 407 (584)
..|.+.++|.||+||+||. .+|.||.+++
T Consensus 267 ~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 267 PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 6799999999999999996 6899999984
No 36
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.9e-35 Score=309.17 Aligned_cols=286 Identities=19% Similarity=0.191 Sum_probs=198.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeec-cCcCCCCCc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRF-EDFTNKDLT 142 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~-~~~~~~~~~ 142 (584)
++++++++||||||||..+...++......+.++++++|++.|+.| +.+.+. +..++ +.... +....+ ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q-~~~~~~---~~~v~----~~~~~~~~~~~~-~~ 71 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASE-MYEALR---GEPIR----YMTPAVQSERTG-NE 71 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHH-HHHHTT---TSCEE----EC---------C-CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHH-HHHHhC---CCeEE----EEecCccccCCC-Cc
Confidence 3689999999999999553222222223355678999999988765 333322 44433 22221 222233 56
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCC
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRR 222 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~ 222 (584)
.+.++|.+.+.+.+..+..+.++++|||||+|.++...+.....++.+. .+++.++++||||+... +..+.
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~------- 142 (431)
T 2v6i_A 72 IVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFP------- 142 (431)
T ss_dssp SEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSC-------
T ss_pred eEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhc-------
Confidence 7888999999988888777999999999999977655556666666554 34689999999999542 00000
Q ss_pred CCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhh
Q 007931 223 GLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART 302 (584)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~ 302 (584)
....++..+... +........ ...+ . ..++++||||+++++++.+++.|.+.
T Consensus 143 ---------~~~~~i~~~~~~-------~~~~~~~~~----~~~l----~-~~~~~~lVF~~~~~~~~~l~~~L~~~--- 194 (431)
T 2v6i_A 143 ---------PSNSPIIDEETR-------IPDKAWNSG----YEWI----T-EFDGRTVWFVHSIKQGAEIGTCLQKA--- 194 (431)
T ss_dssp ---------CCSSCCEEEECC-------CCSSCCSSC----CHHH----H-SCSSCEEEECSSHHHHHHHHHHHHHT---
T ss_pred ---------CCCCceeecccc-------CCHHHHHHH----HHHH----H-cCCCCEEEEeCCHHHHHHHHHHHHHc---
Confidence 001112222111 111111111 1111 1 23678999999999999999999875
Q ss_pred ccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeec
Q 007931 303 SKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPI 382 (584)
Q Consensus 303 ~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~ 382 (584)
++.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +.+||++|..+.+.|| ..++......|.
T Consensus 195 ------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~ 262 (431)
T 2v6i_A 195 ------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAI 262 (431)
T ss_dssp ------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEEC
T ss_pred ------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccC
Confidence 6789999997 678899999999999999999999999999 9999999999999998 566666777899
Q ss_pred cHHhHHHhccccCCCC-CcEEEEccC
Q 007931 383 SKASARQRAGRAGRVR-PGKCYRLYT 407 (584)
Q Consensus 383 s~~~~~QR~GRaGR~~-~G~~~~l~~ 407 (584)
+.++|.||+||+||.+ .+.|+.+|.
T Consensus 263 ~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 263 TPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999999999994 333444443
No 37
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=9.5e-35 Score=318.09 Aligned_cols=345 Identities=17% Similarity=0.187 Sum_probs=194.6
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc----cCCCeEEEEeCchHHHHHHH--HHHHHHHhCCc
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAV--ASRVAEEMGVK 122 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~----~~~~~~I~v~~~r~la~~~~--~~~~~~~~~~~ 122 (584)
+..+.+|.+++..+.+++++++++|||||||......+..... ..++++++++|++.|+.|.. .+.+....+..
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 4567899999999999999999999999999443333322211 12567899999999988733 33344445777
Q ss_pred ceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCC--CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHh------
Q 007931 123 VGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRC------ 193 (584)
Q Consensus 123 vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~------ 193 (584)
++...|........ ......+|+|+||+.|.+.+.... .+.++++|||||||...-.. ....++......
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH-PYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC-HHHHHHHHHHHHHTSSCC
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc-hHHHHHHHHHHhhhcccc
Confidence 77766643221110 001147899999999999887654 37889999999999543332 344444333332
Q ss_pred cCCceEEEEecccCh----------HHHH---HHhhcCCCCCCC-ccccc---CCCCCCeEEEECCccc-cce-------
Q 007931 194 RSDLRLIISSATIEA----------KSMS---AFFHARKGRRGL-EGVEL---VPRLEPAILSVEGRGF-NVQ------- 248 (584)
Q Consensus 194 ~~~~~vi~~SAT~~~----------~~~~---~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~-~v~------- 248 (584)
.++.++++||||+.. +.+. ..++........ ..... ................ +..
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 266899999999932 2222 222211100000 00000 0000000011110000 000
Q ss_pred ----------------------EEecC--------------------C--------------------------------
Q 007931 249 ----------------------IHYVE--------------------E-------------------------------- 254 (584)
Q Consensus 249 ----------------------~~~~~--------------------~-------------------------------- 254 (584)
..+-. .
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 00000 0
Q ss_pred ----------------------------------------------CcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHH
Q 007931 255 ----------------------------------------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD 288 (584)
Q Consensus 255 ----------------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~ 288 (584)
............+.........+++||||+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 0000111122222233333567899999999999
Q ss_pred HHHHHHHHHHHhhhc---cCCCCCeEEEEecCCCCHHHHhcccCCCCC-CCcEEEEeCCCCccccccCCeEEEEecCCcc
Q 007931 289 IDATIQLLTEEARTS---KKNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSK 364 (584)
Q Consensus 289 i~~l~~~L~~~~~~~---~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~-g~~~vlvaT~i~e~Gidip~v~~VId~g~~k 364 (584)
++.+++.|.+..... .....+.....+||+|++++|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~-- 479 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY-- 479 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC--
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC--
Confidence 999999998742100 000113345566789999999999999999 99999999999999999999999999766
Q ss_pred ceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 365 QRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 365 ~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
|.|..+|+||+|| ||..+|.||.++++...+.
T Consensus 480 ----------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 480 ----------------VGNVIKMIQTRGR-GRARDSKCFLLTSSADVIE 511 (555)
T ss_dssp ----------------CSSCCCEECSSCC-CTTTSCEEEEEESCHHHHH
T ss_pred ----------------CCCHHHHHHhcCc-CcCCCceEEEEEcCCCHHH
Confidence 6677777899999 9999999999999876643
No 38
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=9.3e-36 Score=314.36 Aligned_cols=309 Identities=17% Similarity=0.139 Sum_probs=203.7
Q ss_pred hhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHH-
Q 007931 40 ASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE- 118 (584)
Q Consensus 40 ~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~- 118 (584)
.+..+.......+.+|.+++..+.+++++++++|||||||...-..+... ...++++++++|+++|+.|. ++++.+.
T Consensus 11 ~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~-~~~~~~~lil~Pt~~L~~q~-~~~~~~~~ 88 (414)
T 3oiy_A 11 RSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL-ARKGKKSALVFPTVTLVKQT-LERLQKLA 88 (414)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHH-HTTTCCEEEEESSHHHHHHH-HHHHHHHC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHHH-HHHHHHHc
Confidence 34444445666789999999999999999999999999995221111211 23567789999999998764 3334443
Q ss_pred -hCCcceeEEeeEeecc-----CcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCc---------Cccc-hhH
Q 007931 119 -MGVKVGEEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHE---------RSIS-TDI 182 (584)
Q Consensus 119 -~~~~vg~~vg~~~~~~-----~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~He---------r~~~-~d~ 182 (584)
.+..++..+|.....+ .......++|+|+||+.|.+.+.. ..+.++++||+||||. +.++ .++
T Consensus 89 ~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~ 167 (414)
T 3oiy_A 89 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 167 (414)
T ss_dssp CSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTC
T ss_pred cCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCC
Confidence 3445554444221100 001111489999999999876643 3367899999999993 1222 222
Q ss_pred HHHHHHHHHH-hc-----------CCceEEEEecccChH----HH-HHHhhcCCCCCCCcccccCCCCCCeEEEECCccc
Q 007931 183 LLGLLKKIQR-CR-----------SDLRLIISSATIEAK----SM-SAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF 245 (584)
Q Consensus 183 l~~~l~~~~~-~~-----------~~~~vi~~SAT~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (584)
...+++.+.. .+ ++.+++++|||+... .+ ..++...... ......
T Consensus 168 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~ 229 (414)
T 3oiy_A 168 PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR------------------LVSVAR 229 (414)
T ss_dssp CHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC------------------CCCCCC
T ss_pred cHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc------------------cccccc
Confidence 2221222222 22 778999999995221 22 2333211100 000111
Q ss_pred cceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEE-EecCCCCHHHH
Q 007931 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL-PLYSGLSRAEQ 324 (584)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r 324 (584)
.+...+...... +.....+.. .++++||||+++++++.+++.|.+. ++.+. .+||. +|
T Consensus 230 ~i~~~~~~~~~~---~~l~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~h~~----~r 288 (414)
T 3oiy_A 230 NITHVRISSRSK---EKLVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF----EK 288 (414)
T ss_dssp SEEEEEESSCCH---HHHHHHHHH-----HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEEESSSCH----HH
T ss_pred cchheeeccCHH---HHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHc---------CCceehhhcCc----ch
Confidence 223333332222 222222222 2478999999999999999999875 67787 88985 44
Q ss_pred hcccCCCCCCCcEEEEe----CCCCccccccCC-eEEEEecCCccceeecCCCCcccceeee--ccHHhHHHhccccCCC
Q 007931 325 EQVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSKQRFYNPISDIENLVVAP--ISKASARQRAGRAGRV 397 (584)
Q Consensus 325 ~~i~~~~~~g~~~vlva----T~i~e~Gidip~-v~~VId~g~~k~~~~d~~~~~~~l~~~~--~s~~~~~QR~GRaGR~ 397 (584)
+ ++.|++|+.+|||| |+++++|+|+|+ |++||++|. | .|..+|+||+|||||.
T Consensus 289 ~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~------------------p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 289 N--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGT------------------PSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp H--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESC------------------CTTTCHHHHHHHHGGGCCE
T ss_pred H--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECC------------------CCCCCHHHHHHHhCccccC
Confidence 4 89999999999999 999999999999 999999888 7 7999999999999997
Q ss_pred C-----CcEEEEccChHH
Q 007931 398 R-----PGKCYRLYTEEY 410 (584)
Q Consensus 398 ~-----~G~~~~l~~~~~ 410 (584)
+ .|.|+.++.+..
T Consensus 349 g~~~~~~g~~i~~~~~~~ 366 (414)
T 3oiy_A 349 LNGVLVKGVSVIFEEDEE 366 (414)
T ss_dssp ETTEECCEEEEEECCCHH
T ss_pred CCCCCcceEEEEEEccHH
Confidence 3 799999995443
No 39
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.8e-34 Score=324.80 Aligned_cols=346 Identities=16% Similarity=0.156 Sum_probs=180.1
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc----cCCCeEEEEeCchHHHHHHH--HHHHHHHhCC
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAV--ASRVAEEMGV 121 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~----~~~~~~I~v~~~r~la~~~~--~~~~~~~~~~ 121 (584)
....+.+|.+++..+.+++++++++|||||||.+....+..... ..++++++++|++.|+.|.. .+.+....+.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 34567889999999988999999999999999443333322211 11567899999999988743 3334444477
Q ss_pred cceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCCC--CCCCcEEEEeCCCcCccchhHHHHHHHHHHHh-----
Q 007931 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (584)
Q Consensus 122 ~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~----- 193 (584)
.++..+|........ ......+|+|+||++|.+.+..... +.++++|||||||.... ......++..+...
T Consensus 326 ~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~-~~~~~~i~~~~~~~~~~~~ 404 (797)
T 4a2q_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG-NHPYNVLMTRYLEQKFNSA 404 (797)
T ss_dssp CEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCST-TSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCC-CccHHHHHHHHHHHhhccC
Confidence 877777744222111 1112579999999999998876543 78899999999995333 32344444444332
Q ss_pred cCCceEEEEecccCh----------HHHH---HHhhcCCCCCCCcc---c-ccCCCCCCeEEEECCcc------------
Q 007931 194 RSDLRLIISSATIEA----------KSMS---AFFHARKGRRGLEG---V-ELVPRLEPAILSVEGRG------------ 244 (584)
Q Consensus 194 ~~~~~vi~~SAT~~~----------~~~~---~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~------------ 244 (584)
.+..++++||||+.. +.+. ..++.......... . ............++.+.
T Consensus 405 ~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (797)
T 4a2q_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (797)
T ss_dssp CCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHH
Confidence 567899999999932 2222 22221110000000 0 00000000011111000
Q ss_pred -----------------------ccceEE--ec------------CCC--------------------------------
Q 007931 245 -----------------------FNVQIH--YV------------EEP-------------------------------- 255 (584)
Q Consensus 245 -----------------------~~v~~~--~~------------~~~-------------------------------- 255 (584)
+....+ +. ...
T Consensus 485 ~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 564 (797)
T 4a2q_A 485 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (797)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence 000000 00 000
Q ss_pred ----------------------------------------------cchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHH
Q 007931 256 ----------------------------------------------VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDI 289 (584)
Q Consensus 256 ----------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i 289 (584)
...........+........++++||||+++..+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~ 644 (797)
T 4a2q_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (797)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHH
Confidence 0000111111122222235668999999999999
Q ss_pred HHHHHHHHHHhhhcc---CCCCCeEEEEecCCCCHHHHhcccCCCCC-CCcEEEEeCCCCccccccCCeEEEEecCCccc
Q 007931 290 DATIQLLTEEARTSK---KNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (584)
Q Consensus 290 ~~l~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~i~~~~~~-g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~ 365 (584)
+.+++.|.+...... ....+.....+||+|++++|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 645 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~--- 721 (797)
T 4a2q_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 721 (797)
T ss_dssp HHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC---
T ss_pred HHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC---
Confidence 999999976310000 00114456678999999999999999999 99999999999999999999999999877
Q ss_pred eeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHhh
Q 007931 366 RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 366 ~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (584)
|.|..+|+||+|| ||.++|.||.|+++...+.
T Consensus 722 ---------------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 722 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 753 (797)
T ss_dssp ---------------CSCHHHHHTC--------CCCEEEEECCHHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcHHH
Confidence 8899999999999 9999999999999876543
No 40
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.2e-34 Score=315.11 Aligned_cols=290 Identities=19% Similarity=0.228 Sum_probs=203.7
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeec-cCcCCC
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRF-EDFTNK 139 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~-~~~~~~ 139 (584)
.+.++++++++||||||||+.+...++......+.++++++|++.|+.|.. +.+. +..+ ++.... .....+
T Consensus 237 ~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~-~~l~---~~~i----~~~~~~l~~v~tp 308 (673)
T 2wv9_A 237 MLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMA-EALR---GLPV----RYLTPAVQREHSG 308 (673)
T ss_dssp GGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHH-HHTT---TSCC----EECCC---CCCCS
T ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHH-HHHh---cCCe----eeecccccccCCH
Confidence 344899999999999999955322222222234567899999998877633 3222 2222 222221 112233
Q ss_pred CCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCC
Q 007931 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (584)
Q Consensus 140 ~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~ 219 (584)
...+.+++.+.+.+.+..+..+.++++|||||+|+.+...+.....++.+.. ..+.++++||||++.. +..+..
T Consensus 309 -~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~-i~~~~~--- 382 (673)
T 2wv9_A 309 -NEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGT-SDPFPD--- 382 (673)
T ss_dssp -CCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCC---
T ss_pred -HHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChh-hhhhcc---
Confidence 5667888999998888887779999999999999776666666666666543 3678999999999532 000000
Q ss_pred CCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHH
Q 007931 220 GRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE 299 (584)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~ 299 (584)
...++..+... +........+ ..+ . ...+++||||+++++++.+++.|.+.
T Consensus 383 -------------~~~~i~~v~~~-------~~~~~~~~~l----~~l---~--~~~~~~lVF~~s~~~~e~la~~L~~~ 433 (673)
T 2wv9_A 383 -------------TNSPVHDVSSE-------IPDRAWSSGF----EWI---T--DYAGKTVWFVASVKMSNEIAQCLQRA 433 (673)
T ss_dssp -------------CSSCEEEEECC-------CCSSCCSSCC----HHH---H--SCCSCEEEECSSHHHHHHHHHHHHTT
T ss_pred -------------cCCceEEEeee-------cCHHHHHHHH----HHH---H--hCCCCEEEEECCHHHHHHHHHHHHhC
Confidence 01112222211 1111111111 111 1 24788999999999999999999764
Q ss_pred hhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccce--eecCCCCcccc
Q 007931 300 ARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR--FYNPISDIENL 377 (584)
Q Consensus 300 ~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~--~~d~~~~~~~l 377 (584)
++.+..+||. +|.++++.|++|+++|||||+++++|||+| +++||++|....+ .||...++..+
T Consensus 434 ---------g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll 499 (673)
T 2wv9_A 434 ---------GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILS 499 (673)
T ss_dssp ---------TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEEC
T ss_pred ---------CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceec
Confidence 7789999994 889999999999999999999999999999 9999999976544 36766666666
Q ss_pred eeeeccHHhHHHhccccCCC--CCcEEEEccC
Q 007931 378 VVAPISKASARQRAGRAGRV--RPGKCYRLYT 407 (584)
Q Consensus 378 ~~~~~s~~~~~QR~GRaGR~--~~G~~~~l~~ 407 (584)
...|.|.++|.||+||+||. ++|.||.++.
T Consensus 500 ~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 500 VPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred ccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 66799999999999999998 6899999974
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=330.22 Aligned_cols=338 Identities=19% Similarity=0.194 Sum_probs=200.5
Q ss_pred hcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc-----CccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 007931 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-----GWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (584)
Q Consensus 46 ~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~-----~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~ 120 (584)
+..++.+.+|.+++..+.+++++++.+|||||||.+....+... ....++++|+++|++.|+.|.+.+.+.+..+
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 35678899999999999999999999999999995443333221 1112267899999999998774666666665
Q ss_pred --CcceeEEeeEeeccCcC-CCCCceEEEechHHHHHHHccC------C-CCCCCcEEEEeCCCcCccch----hHHHHH
Q 007931 121 --VKVGEEVGYTIRFEDFT-NKDLTAIKFLTDGVLLREMMDD------P-LLTKYSVIMVDEAHERSIST----DILLGL 186 (584)
Q Consensus 121 --~~vg~~vg~~~~~~~~~-~~~~~~I~~~T~~~ll~~l~~~------~-~l~~~~~iIiDE~Her~~~~----d~l~~~ 186 (584)
..++...|.....+... .....+|+|+||+.|.+.+... . .+.++++||||||| +.... ..+..+
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH-~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH-HTNKEAVYNNIMRHY 161 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGG-GCBTTBSSCSHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECcc-ccCccchHHHHHHHH
Confidence 56776666543322111 0126899999999999887432 2 37889999999999 32222 222222
Q ss_pred HHH-HHHhc---------CCceEEEEecccCh----------HHHH---HHhhcCCCCCCCcc-ccc---CCCCCCeEEE
Q 007931 187 LKK-IQRCR---------SDLRLIISSATIEA----------KSMS---AFFHARKGRRGLEG-VEL---VPRLEPAILS 239 (584)
Q Consensus 187 l~~-~~~~~---------~~~~vi~~SAT~~~----------~~~~---~~~~~~~~~~~~~~-~~~---~~~~~~~~~~ 239 (584)
+.. +.... +..++|+||||+.. +.+. ..+........... ... ..........
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 222 22222 67899999999953 1222 22322111000000 000 0000000111
Q ss_pred ECCccc---------------------cceEE----ec------------------------------------------
Q 007931 240 VEGRGF---------------------NVQIH----YV------------------------------------------ 252 (584)
Q Consensus 240 ~~~~~~---------------------~v~~~----~~------------------------------------------ 252 (584)
...... |...+ |.
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110000 00000 00
Q ss_pred -----------------------------CCCcchHH-------------------------HHHHHHHHHHHhcCC-CC
Q 007931 253 -----------------------------EEPVSDYV-------------------------QAAVSTVLLIHDKEP-PG 277 (584)
Q Consensus 253 -----------------------------~~~~~~~~-------------------------~~~~~~i~~~~~~~~-~~ 277 (584)
......++ ......+.......+ ++
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~ 401 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESA 401 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 00000000 000111222222223 78
Q ss_pred CEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCC--------CCHHHHhcccCCCCCCCcEEEEeCCCCcccc
Q 007931 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSG--------LSRAEQEQVFSPTPRGKRKVVISTNIAETSL 349 (584)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gi 349 (584)
++||||+++..++.+++.|.+.. .....++.+..+||+ |++++|.++++.|++|..+|||||+++++||
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~---~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENE---KFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSC---SCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred cEEEEECcHHHHHHHHHHHHhCc---cccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 89999999999999999997530 001126789999999 9999999999999999999999999999999
Q ss_pred ccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccC
Q 007931 350 TLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYT 407 (584)
Q Consensus 350 dip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~ 407 (584)
|+|++++||++++ |.|..+|.||+|||||.+ .++.++.
T Consensus 479 Dip~v~~VI~~d~------------------p~s~~~~~Qr~GRArr~g--~~~~l~~ 516 (699)
T 4gl2_A 479 DIKECNIVIRYGL------------------VTNEIAMVQARGRARADE--STYVLVA 516 (699)
T ss_dssp CCCSCCCCEEESC------------------CCCHHHHHHHHTTSCSSS--CEEEEEE
T ss_pred ccccCCEEEEeCC------------------CCCHHHHHHHcCCCCCCC--ceEEEEE
Confidence 9999999999887 889999999999987643 4444443
No 42
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5.2e-33 Score=319.67 Aligned_cols=345 Identities=16% Similarity=0.161 Sum_probs=180.9
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccC----CCeEEEEeCchHHHHHHH--HHHHHHHhCC
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWAD----GGRVIACTQPRRLAVQAV--ASRVAEEMGV 121 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~----~~~~I~v~~~r~la~~~~--~~~~~~~~~~ 121 (584)
....+.+|.+++..+.+++++++++|||||||.+....+....... ++++++++|++.|+.|.. .+++....+.
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 4567788999999999999999999999999955544444432221 567899999999988743 3334444577
Q ss_pred cceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCCC--CCCCcEEEEeCCCcCccchhHHHHHHHHHHHh-----
Q 007931 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (584)
Q Consensus 122 ~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~----- 193 (584)
.++...|........ ......+|+|+||++|.+.+..... +.++++|||||||... .......++..+...
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~-~~~~~~~i~~~~~~~~~~~~ 404 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT-GNHPYNVLMTRYLEQKFNSA 404 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCS-TTCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccC-CCccHHHHHHHHHHHhhccC
Confidence 777777744221111 1112578999999999998876543 7789999999999433 332344444444332
Q ss_pred cCCceEEEEecccCh----------HHHH---HHhhcCCCCCCCcc-cc---cCCCCCCeEEEECC--------------
Q 007931 194 RSDLRLIISSATIEA----------KSMS---AFFHARKGRRGLEG-VE---LVPRLEPAILSVEG-------------- 242 (584)
Q Consensus 194 ~~~~~vi~~SAT~~~----------~~~~---~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~-------------- 242 (584)
.+..++++||||+.. +.+. ..++.......... .. ..............
T Consensus 405 ~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~ 484 (936)
T 4a2w_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (936)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHH
Confidence 566899999999932 1121 22221100000000 00 00000000111110
Q ss_pred ---------------------ccccceEE--ec------------CCC--------------------------------
Q 007931 243 ---------------------RGFNVQIH--YV------------EEP-------------------------------- 255 (584)
Q Consensus 243 ---------------------~~~~v~~~--~~------------~~~-------------------------------- 255 (584)
..+....+ +. ...
T Consensus 485 ~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~ 564 (936)
T 4a2w_A 485 SETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (936)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 00000000 00 000
Q ss_pred ----------------------------------------------cchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHH
Q 007931 256 ----------------------------------------------VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDI 289 (584)
Q Consensus 256 ----------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i 289 (584)
...........+........++++||||+++..+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~a 644 (936)
T 4a2w_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHH
Confidence 0000000111111111224568999999999999
Q ss_pred HHHHHHHHHHhhh--cc-CCCCCeEEEEecCCCCHHHHhcccCCCCC-CCcEEEEeCCCCccccccCCeEEEEecCCccc
Q 007931 290 DATIQLLTEEART--SK-KNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (584)
Q Consensus 290 ~~l~~~L~~~~~~--~~-~~~~~~~v~~lh~~l~~~~r~~i~~~~~~-g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~ 365 (584)
+.+++.|.+...- .. ....+.....+||+|+..+|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 645 e~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~--- 721 (936)
T 4a2w_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 721 (936)
T ss_dssp HHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC---
T ss_pred HHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC---
Confidence 9999999874100 00 00113445667999999999999999999 99999999999999999999999999777
Q ss_pred eeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChHHHh
Q 007931 366 RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFV 412 (584)
Q Consensus 366 ~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~ 412 (584)
|.|..+|+||+|| ||..+|.||.|+++...+
T Consensus 722 ---------------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 722 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp ---------------CSCSHHHHCC--------CCCEEEEESCHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 7889999999999 999999999999976654
No 43
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=7.4e-33 Score=308.71 Aligned_cols=307 Identities=17% Similarity=0.190 Sum_probs=198.9
Q ss_pred cCCCchHHHHHHHHHHhcC------CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHH--
Q 007931 47 QRLPVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE-- 118 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~------~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~-- 118 (584)
.....+..|.+++..+.++ .+++++||||||||......++.. ...+.++++++|++.|+.|. .+++.+.
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~-l~~g~qvlvlaPtr~La~Q~-~~~l~~~~~ 442 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN-YEAGFQTAFMVPTSILAIQH-YRRTVESFS 442 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH-HHHTSCEEEECSCHHHHHHH-HHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHH-HHHHHHHhh
Confidence 3446778888777777654 479999999999995555444433 22356789999999888763 3333333
Q ss_pred -hCCcceeEEeeEeeccCc-----CCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH
Q 007931 119 -MGVKVGEEVGYTIRFEDF-----TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (584)
Q Consensus 119 -~~~~vg~~vg~~~~~~~~-----~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (584)
.+..++..+|.....+.. ......+|+|+||+.+.+ +..+.++++|||||+|..+.... ..+..
T Consensus 443 ~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~qr------~~l~~ 512 (780)
T 1gm5_A 443 KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQR------EALMN 512 (780)
T ss_dssp CSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-----------CCCCS
T ss_pred hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHHH------HHHHH
Confidence 356666666643221110 111258999999987743 44588999999999995432211 11222
Q ss_pred hcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEE-ECCccccceEEecCCCcchHHHHHHHHHHHHH
Q 007931 193 CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILS-VEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIH 271 (584)
Q Consensus 193 ~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~ 271 (584)
...+.++++||||+....+...+.+... ..++. .+....++...+..... .......+....
T Consensus 513 ~~~~~~vL~mSATp~p~tl~~~~~g~~~--------------~s~i~~~p~~r~~i~~~~~~~~~---~~~l~~~i~~~l 575 (780)
T 1gm5_A 513 KGKMVDTLVMSATPIPRSMALAFYGDLD--------------VTVIDEMPPGRKEVQTMLVPMDR---VNEVYEFVRQEV 575 (780)
T ss_dssp SSSCCCEEEEESSCCCHHHHHHHTCCSS--------------CEEECCCCSSCCCCEECCCCSST---HHHHHHHHHHHT
T ss_pred hCCCCCEEEEeCCCCHHHHHHHHhCCcc--------------eeeeeccCCCCcceEEEEeccch---HHHHHHHHHHHH
Confidence 3356899999999977666544322210 00111 12222344444433322 222333333222
Q ss_pred hcCCCCCEEEEeCcHHHH--------HHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCC
Q 007931 272 DKEPPGDILVFLTGQDDI--------DATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN 343 (584)
Q Consensus 272 ~~~~~~~iLVF~~~~~~i--------~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~ 343 (584)
..+++++|||++.++. +.+++.|.+. ..+++.+..+||+|++++|.++++.|++|+.+|||||+
T Consensus 576 --~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~ 647 (780)
T 1gm5_A 576 --MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT 647 (780)
T ss_dssp --TTSCCBCCBCCCC--------CHHHHHHHSGGGS------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS
T ss_pred --hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC
Confidence 4567899999976553 4444444320 12367899999999999999999999999999999999
Q ss_pred CCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccC
Q 007931 344 IAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (584)
Q Consensus 344 i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (584)
++++|||+|++++||.++. . ..+.+++.||+||+||. .+|.||.+++
T Consensus 648 vie~GIDiP~v~~VIi~d~--------~---------r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 648 VIEVGIDVPRANVMVIENP--------E---------RFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp CCCSCSCCTTCCEEEBCSC--------S---------SSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred CCCccccCCCCCEEEEeCC--------C---------CCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 9999999999999998654 1 12567888999999998 7899999997
No 44
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=3.3e-31 Score=308.88 Aligned_cols=320 Identities=16% Similarity=0.150 Sum_probs=212.2
Q ss_pred CCCccchhhHHHHhcCCCchHHHHHHHHHHhc----CC--EEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHH
Q 007931 33 SSIGYGYASIEKQRQRLPVYKYRTAILYLVET----HA--TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (584)
Q Consensus 33 ~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~----~~--~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~l 106 (584)
+.....+.++.+ ........+|.+.+..+.+ ++ +++++||||||||.++...+... ...+.++++++|++.|
T Consensus 587 ~~~~~~~~~~~~-~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~-~~~g~~vlvlvPt~~L 664 (1151)
T 2eyq_A 587 KHDREQYQLFCD-SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VDNHKQVAVLVPTTLL 664 (1151)
T ss_dssp CCCHHHHHHHHH-TCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH-HTTTCEEEEECSSHHH
T ss_pred CCCHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH-HHhCCeEEEEechHHH
Confidence 334444433322 2333347788777777654 55 89999999999995544333322 2245678888888888
Q ss_pred HHHHHHHHHHHHh---CCcceeEEeeEeeccCc-----CCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCcc
Q 007931 107 AVQAVASRVAEEM---GVKVGEEVGYTIRFEDF-----TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI 178 (584)
Q Consensus 107 a~~~~~~~~~~~~---~~~vg~~vg~~~~~~~~-----~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~ 178 (584)
+.| +.+++.+.+ +..++...|+....+.. ......+|+|+|++.+. .+..+.++++|||||+|..+.
T Consensus 665 a~Q-~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~~g~ 739 (1151)
T 2eyq_A 665 AQQ-HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHRFGV 739 (1151)
T ss_dssp HHH-HHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGGSCH
T ss_pred HHH-HHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHhcCh
Confidence 765 444444443 34444443322111110 11125899999998653 344588999999999996332
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhcCCCCCCCcccccCCCCCCeEEEE-CCccccceEEecCCCcc
Q 007931 179 STDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV-EGRGFNVQIHYVEEPVS 257 (584)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 257 (584)
. ....+...+.+.++++||||+....+...+...... ..+.. +....++..+.......
T Consensus 740 ~------~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~--------------~~i~~~~~~r~~i~~~~~~~~~~ 799 (1151)
T 2eyq_A 740 R------HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL--------------SIIATPPARRLAVKTFVREYDSM 799 (1151)
T ss_dssp H------HHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEE--------------EECCCCCCBCBCEEEEEEECCHH
T ss_pred H------HHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCc--------------eEEecCCCCccccEEEEecCCHH
Confidence 2 122333445678999999999766665554432200 01111 11223344333332221
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcE
Q 007931 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (584)
Q Consensus 258 ~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~ 337 (584)
. ....+.... ..+++++|||+++++++.+++.|.+.. ++..+..+||+|+.++|.++++.|++|+.+
T Consensus 800 ~----i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~ 866 (1151)
T 2eyq_A 800 V----VREAILREI--LRGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFN 866 (1151)
T ss_dssp H----HHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTTSCC
T ss_pred H----HHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCc
Confidence 1 222222222 356889999999999999999998874 367899999999999999999999999999
Q ss_pred EEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 338 vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
|||||+++++|||+|++++||..+. . +.+.+++.||+||+||. .+|.||.++++.
T Consensus 867 VLVaT~v~e~GiDip~v~~VIi~~~--------~---------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 867 VLVCTTIIETGIDIPTANTIIIERA--------D---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEEESSTTGGGSCCTTEEEEEETTT--------T---------SSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEEECCcceeeecccCCcEEEEeCC--------C---------CCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999999999999999996432 1 23567899999999998 789999998754
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=8.7e-32 Score=312.04 Aligned_cols=274 Identities=17% Similarity=0.115 Sum_probs=172.6
Q ss_pred hcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH-HHHHHHHHhcCccCCCeEEEEeCchHHHHHH--HHHHHHHHhCC-
Q 007931 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKT-TQIPQYLKEAGWADGGRVIACTQPRRLAVQA--VASRVAEEMGV- 121 (584)
Q Consensus 46 ~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT-~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~--~~~~~~~~~~~- 121 (584)
...++. ..|.+++..+.++++++++|||||||| +.+|.+.. ....+.++++++|+++|+.|. ..+.+....+.
T Consensus 53 ~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~--~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~ 129 (1054)
T 1gku_B 53 CVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLF--LALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 129 (1054)
T ss_dssp TTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHH--HHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred hcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHH--HhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCC
Confidence 334444 899999999999999999999999999 44444332 223566789999999999873 33444455566
Q ss_pred ---cceeEEeeEeeccC----cCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH--
Q 007931 122 ---KVGEEVGYTIRFED----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-- 192 (584)
Q Consensus 122 ---~vg~~vg~~~~~~~----~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-- 192 (584)
.++..+|.....+. .... .++|+|+||++|++.+.. +.++++|||||||+-.-....+..+++.+..
T Consensus 130 ~~~~v~~~~Gg~~~~~~~~~~~~l~-~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~ 205 (1054)
T 1gku_B 130 TENLIGYYHGRIPKREKENFMQNLR-NFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHY 205 (1054)
T ss_dssp GGGSEEECCSSCCSHHHHHHHHSGG-GCSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEE
T ss_pred ccceEEEEeCCCChhhHHHHHhhcc-CCCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHHHHHHhCcch
Confidence 56666664322220 1112 289999999999987654 7799999999999422222233333333210
Q ss_pred ------hcCCceEEEEecccCh-HHHH-HHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCcchHHHHHH
Q 007931 193 ------CRSDLRLIISSATIEA-KSMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAV 264 (584)
Q Consensus 193 ------~~~~~~vi~~SAT~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 264 (584)
...+.+++++|||+.. ..+. .++.... ...... ... ...++...+......+.+
T Consensus 206 ~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~-~i~v~~---------~~~----~~~~i~~~~~~~~k~~~L---- 267 (1054)
T 1gku_B 206 DLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLL-NFDIGS---------SRI----TVRNVEDVAVNDESISTL---- 267 (1054)
T ss_dssp ETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHH-CCCCSC---------CEE----CCCCEEEEEESCCCTTTT----
T ss_pred hhhhhhcccCCceEEEEecCCCchhHHHHHhhcce-EEEccC---------ccc----CcCCceEEEechhHHHHH----
Confidence 1345678999999843 2222 2222211 000000 000 011233333332222221
Q ss_pred HHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEe---
Q 007931 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS--- 341 (584)
Q Consensus 265 ~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlva--- 341 (584)
..+... .++++||||+++++++.+++.|.+. +.+..+||++. ++++.|++|..+||||
T Consensus 268 ---~~ll~~-~~~~~LVF~~t~~~a~~l~~~L~~~----------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas 328 (1054)
T 1gku_B 268 ---SSILEK-LGTGGIIYARTGEEAEEIYESLKNK----------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAH 328 (1054)
T ss_dssp ---HHHHTT-SCSCEEEEESSHHHHHHHHHTTTTS----------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC
T ss_pred ---HHHHhh-cCCCEEEEEcCHHHHHHHHHHHhhc----------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecC
Confidence 122222 2578999999999999999887431 67999999983 5677789999999999
Q ss_pred -CCCCccccccCCe-EEEEecCCc
Q 007931 342 -TNIAETSLTLEGI-VYVVDSGFS 363 (584)
Q Consensus 342 -T~i~e~Gidip~v-~~VId~g~~ 363 (584)
||++++|||+|+| ++||++|..
T Consensus 329 ~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 329 YYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp ------CCSCCTTTCCEEEEESCC
T ss_pred CCCeeEeccccCCcccEEEEeCCC
Confidence 9999999999995 999999997
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=1.2e-31 Score=287.73 Aligned_cols=311 Identities=17% Similarity=0.143 Sum_probs=203.5
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCc-ceeE
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK-VGEE 126 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~-vg~~ 126 (584)
.+.++.+|.+++..+.+++.+++++|||+|||.+....+... +.++++++|++.|+.| +.+++.+ ++.. ++..
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q-~~~~~~~-~~~~~v~~~ 164 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQ-WKERLGI-FGEEYVGEF 164 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHH-HHHHGGG-GCGGGEEEB
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHH-HHHHHHh-CCCcceEEE
Confidence 457899999999999888899999999999996665555443 4578999999888775 4455555 6665 5544
Q ss_pred EeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
.|.. .. ..+|+|+|++.+...+.. ...++++|||||+|. ..+..+ +.+....+..++++||||+
T Consensus 165 ~g~~-------~~-~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~-~~~~~~-----~~~~~~~~~~~~l~lSATp 228 (472)
T 2fwr_A 165 SGRI-------KE-LKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH-LPAESY-----VQIAQMSIAPFRLGLTATF 228 (472)
T ss_dssp SSSC-------BC-CCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGG-TTSTTT-----HHHHHTCCCSEEEEEESCC
T ss_pred CCCc-------CC-cCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcC-CCChHH-----HHHHHhcCCCeEEEEecCc
Confidence 4321 12 578999999998765531 135699999999994 333322 2234445678899999999
Q ss_pred Ch-----HHHHHHhhcCCCCCCCcccccCCCCCCe---EEEECCccccc-----------------------eEEec---
Q 007931 207 EA-----KSMSAFFHARKGRRGLEGVELVPRLEPA---ILSVEGRGFNV-----------------------QIHYV--- 252 (584)
Q Consensus 207 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v-----------------------~~~~~--- 252 (584)
.. ..+..+++............ .....+. .+.++...... ...+.
T Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 307 (472)
T 2fwr_A 229 EREDGRHEILKEVVGGKVFELFPDSLA-GKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIV 307 (472)
T ss_dssp CCTTSGGGSHHHHTCCEEEECCHHHHT-SCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTT
T ss_pred cCCCCHHHHHHHHhCCeEeecCHHHHh-cCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHH
Confidence 41 12444444321111111100 0000000 01111000000 00000
Q ss_pred ------CCCcchH------------HHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEE
Q 007931 253 ------EEPVSDY------------VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILP 314 (584)
Q Consensus 253 ------~~~~~~~------------~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~ 314 (584)
+...... .......+..+.....++++||||++++.++.+++.|. +..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~ 373 (472)
T 2fwr_A 308 MASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IPA 373 (472)
T ss_dssp TTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CCB
T ss_pred HHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------cce
Confidence 0000000 00112333444444567899999999999999888762 456
Q ss_pred ecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhcccc
Q 007931 315 LYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRA 394 (584)
Q Consensus 315 lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRa 394 (584)
+||+++..+|+++++.|++|..+|||||+++++|+|+|++++||.++. |.|..+|.||+|||
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~------------------~~s~~~~~Q~~GR~ 435 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSG------------------SGSAREYIQRLGRI 435 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECC------------------SSCCHHHHHHHHHS
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECC------------------CCCHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999998766 67889999999999
Q ss_pred CCCCCc----EEEEccChHHHhh
Q 007931 395 GRVRPG----KCYRLYTEEYFVK 413 (584)
Q Consensus 395 GR~~~G----~~~~l~~~~~~~~ 413 (584)
||.++| .+|.++++...+.
T Consensus 436 ~R~g~~k~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 436 LRPSKGKKEAVLYELISRGTGEV 458 (472)
T ss_dssp BCCCTTTCCEEEEEEEECSCC--
T ss_pred cCCCCCCceEEEEEEEeCCCchH
Confidence 999666 5677777654443
No 47
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=1.6e-31 Score=309.70 Aligned_cols=274 Identities=16% Similarity=0.111 Sum_probs=176.9
Q ss_pred cCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHH--HhCCcce
Q 007931 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE--EMGVKVG 124 (584)
Q Consensus 47 ~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~--~~~~~vg 124 (584)
.....+..|.+++..+.++++++++||||||||...-..+.. ....+.++++++|+++|+.|. .+++.+ ..+..++
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~-~~~~~~~~Lil~PtreLa~Q~-~~~l~~l~~~~i~v~ 152 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALW-LARKGKKSALVFPTVTLVKQT-LERLQKLADEKVKIF 152 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHH-HHTTTCCEEEEESSHHHHHHH-HHHHHTTSCTTSCEE
T ss_pred cCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHH-HHhcCCeEEEEechHHHHHHH-HHHHHHhhCCCCeEE
Confidence 445677888888999999999999999999999522112222 224567789999999998764 333333 2344555
Q ss_pred eEEeeEeecc-----CcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccch---hHHHH-------HHHH
Q 007931 125 EEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIST---DILLG-------LLKK 189 (584)
Q Consensus 125 ~~vg~~~~~~-----~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~---d~l~~-------~l~~ 189 (584)
..+|.....+ .......++|+|+||+.|++.+.. ..+.++++|||||||.-.... |-++. .++.
T Consensus 153 ~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~ 231 (1104)
T 4ddu_A 153 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 231 (1104)
T ss_dssp EECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHH
Confidence 5555322100 001121489999999999876653 237789999999999311111 22222 1222
Q ss_pred HHH-hc-----------CCceEEEEecccChH-----HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEec
Q 007931 190 IQR-CR-----------SDLRLIISSATIEAK-----SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYV 252 (584)
Q Consensus 190 ~~~-~~-----------~~~~vi~~SAT~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 252 (584)
+.. .+ .+.+++++|||+... .+..++.... .........+...+.
T Consensus 232 il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v------------------~~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 232 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV------------------GRLVSVARNITHVRI 293 (1104)
T ss_dssp HHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC------------------CBCCCCCCCEEEEEE
T ss_pred HHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe------------------ccCCCCcCCceeEEE
Confidence 222 22 678999999995322 2222222110 000011122333333
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEE-EecCCCCHHHHhcccCCC
Q 007931 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL-PLYSGLSRAEQEQVFSPT 331 (584)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~i~~~~ 331 (584)
...... .....+.. .++++||||++++.++.+++.|.+. ++.+. .+||. |.+ ++.|
T Consensus 294 ~~~k~~---~L~~ll~~-----~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg~-----rr~-l~~F 350 (1104)
T 4ddu_A 294 SSRSKE---KLVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF-----EKN-FEDF 350 (1104)
T ss_dssp SCCCHH---HHHHHHHH-----HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSSH-----HHH-HHHH
T ss_pred ecCHHH---HHHHHHHh-----cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecCc-----HHH-HHHH
Confidence 332222 22222222 2478999999999999999999875 77787 99982 445 9999
Q ss_pred CCCCcEEEEe----CCCCccccccCC-eEEEEecCCcc
Q 007931 332 PRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSK 364 (584)
Q Consensus 332 ~~g~~~vlva----T~i~e~Gidip~-v~~VId~g~~k 364 (584)
++|+.+|||| |+++++|||+|+ |++||++|+.+
T Consensus 351 ~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 351 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9999999999 999999999999 99999999987
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=2e-30 Score=281.01 Aligned_cols=313 Identities=12% Similarity=0.091 Sum_probs=192.5
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhC---Cccee
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG---VKVGE 125 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~---~~vg~ 125 (584)
...+.+|.+++..+.+++++++++|||||||.++...+.......++++++++|++.|+.|.. +.+.+... ..++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~-~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMA-DDFVDYRLFSHAMIKK 190 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHH-HHHHHTTSSCGGGEEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHH-HHHHHhhcCCccceEE
Confidence 367888888888888888999999999999966544443322223458899999998887644 44443322 12222
Q ss_pred EEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHH-HHhcCCceEEEEec
Q 007931 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKI-QRCRSDLRLIISSA 204 (584)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~-~~~~~~~~vi~~SA 204 (584)
..|.....+. . ....+|+|+|++.+.+. ....+.++++|||||+|. ... .. +..+ ....+..++++|||
T Consensus 191 ~~~~~~~~~~-~-~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~-~~~-~~----~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 191 IGGGASKDDK-Y-KNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHL-ATG-KS----ISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp CGGGCCTTGG-G-CTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGG-CCH-HH----HHHHGGGCTTCCEEEEEES
T ss_pred EecCCccccc-c-ccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcC-CCc-cc----HHHHHHhcccCcEEEEEEe
Confidence 2222111111 1 13689999999976543 113377899999999994 332 11 2233 23446778999999
Q ss_pred ccChH-----HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCc-----chHH-------------H
Q 007931 205 TIEAK-----SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV-----SDYV-------------Q 261 (584)
Q Consensus 205 T~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~-------------~ 261 (584)
|+... .+..+++..................+ -...++......... ..+. .
T Consensus 261 Tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 261 SLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTE------LKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp CGGGCSSCHHHHHHHHCSEECCCCCC---------C------CEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred CCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCC------ceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99322 13334443211111100000000000 000000000000000 0111 1
Q ss_pred HHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEe
Q 007931 262 AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS 341 (584)
Q Consensus 262 ~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlva 341 (584)
.....+.... ...+..++||++ .++++.+++.|.+. +..+..+||+++.++|.++++.|++|+.+||||
T Consensus 335 ~l~~~l~~~~-~~~~~~~ivf~~-~~~~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~ 403 (510)
T 2oca_A 335 WIAKLAIKLA-QKDENAFVMFKH-VSHGKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403 (510)
T ss_dssp HHHHHHHHHH-TTTCEEEEEESS-HHHHHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHH-hcCCCeEEEEec-HHHHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 1122222222 223445667766 88888888888654 347999999999999999999999999999999
Q ss_pred C-CCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcE-EEEccC
Q 007931 342 T-NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGK-CYRLYT 407 (584)
Q Consensus 342 T-~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~-~~~l~~ 407 (584)
| +++++|+|+|++++||..+. +.|.+++.||+||+||.++|. ++.+|+
T Consensus 404 T~~~~~~GiDip~v~~vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 404 SYGVFSTGISVKNLHHVVLAHG------------------VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EHHHHHHSCCCCSEEEEEESSC------------------CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EcChhhcccccccCcEEEEeCC------------------CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9 99999999999999998776 667889999999999995543 555554
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=6.4e-29 Score=271.86 Aligned_cols=321 Identities=19% Similarity=0.210 Sum_probs=206.0
Q ss_pred CchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCccee
Q 007931 50 PVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGE 125 (584)
Q Consensus 50 P~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~ 125 (584)
-.+..|...+..+.+++ |..++||+||| +.+|.++... .+..+++++|++.||.+ +....+.+.+|..++.
T Consensus 83 ~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~ 157 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 157 (844)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 33445555555666676 89999999999 6777764322 34568999999999987 5566788888998887
Q ss_pred EEeeEeeccCcCCCCCceEEEechHHH-HHHHccC-------CCCCCCcEEEEeCCCcCccch---------------hH
Q 007931 126 EVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIST---------------DI 182 (584)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~~~T~~~l-l~~l~~~-------~~l~~~~~iIiDE~Her~~~~---------------d~ 182 (584)
.+|.....+..... .++|+|+||+.| ++.+..+ ..++.+.++||||||.-.++. ++
T Consensus 158 i~gg~~~~~r~~~~-~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 158 NLNSMSKDEKREAY-AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp CCTTSCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred EeCCCCHHHHHHhc-CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 77743222222222 589999999999 5554432 237899999999999321122 23
Q ss_pred HHHHHHHHHHhc---------CCceEE-----------------EEecccCh--HHHH-----HH-hhcCCC--------
Q 007931 183 LLGLLKKIQRCR---------SDLRLI-----------------ISSATIEA--KSMS-----AF-FHARKG-------- 220 (584)
Q Consensus 183 l~~~l~~~~~~~---------~~~~vi-----------------~~SAT~~~--~~~~-----~~-~~~~~~-------- 220 (584)
...+-+.+.... ++.++. ++|||... ..+. .+ |.....
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v 316 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQV 316 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEE
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCee
Confidence 333333332332 244555 78888631 2221 11 111000
Q ss_pred --------C----CCCc-----------ccccCCC-CC-----------------------------------CeEEEEC
Q 007931 221 --------R----RGLE-----------GVELVPR-LE-----------------------------------PAILSVE 241 (584)
Q Consensus 221 --------~----~~~~-----------~~~~~~~-~~-----------------------------------~~~~~~~ 241 (584)
. ..+. .+...+. .. ..++.+|
T Consensus 317 ~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IP 396 (844)
T 1tf5_A 317 VIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIP 396 (844)
T ss_dssp EEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECC
T ss_pred EEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEec
Confidence 0 0000 0000000 00 0011121
Q ss_pred Cccccce------EEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEe
Q 007931 242 GRGFNVQ------IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPL 315 (584)
Q Consensus 242 ~~~~~v~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (584)
.. .|+. ..|. ...+....++..+...+. .+.++||||+|++.++.+++.|.+. ++.+..+
T Consensus 397 tn-~p~~r~d~~d~v~~--~~~~K~~al~~~i~~~~~--~~~pvLVft~s~~~se~Ls~~L~~~---------gi~~~vL 462 (844)
T 1tf5_A 397 TN-RPVVRDDRPDLIYR--TMEGKFKAVAEDVAQRYM--TGQPVLVGTVAVETSELISKLLKNK---------GIPHQVL 462 (844)
T ss_dssp CS-SCCCCEECCCEEES--SHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHHHHHHTT---------TCCCEEE
T ss_pred CC-CCcccccCCcEEEe--CHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCEEEe
Confidence 11 1110 1111 122233333444433332 3557999999999999999999875 7889999
Q ss_pred cCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccC--------CeEEEEecCCccceeecCCCCcccceeeeccHHhH
Q 007931 316 YSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASA 387 (584)
Q Consensus 316 h~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip--------~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~ 387 (584)
||++.+.++..+.+.++.| .|+||||+|++|+||+ ++.+||++++ |-|...|
T Consensus 463 hg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~------------------p~s~r~y 522 (844)
T 1tf5_A 463 NAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER------------------HESRRID 522 (844)
T ss_dssp CSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC------------------CSSHHHH
T ss_pred eCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecC------------------CCCHHHH
Confidence 9999988888787777766 5999999999999999 8999999988 8999999
Q ss_pred HHhccccCCC-CCcEEEEccChHH
Q 007931 388 RQRAGRAGRV-RPGKCYRLYTEEY 410 (584)
Q Consensus 388 ~QR~GRaGR~-~~G~~~~l~~~~~ 410 (584)
.||+||+||. .+|.++.+++.++
T Consensus 523 ~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 523 NQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HhhcCccccCCCCCeEEEEecHHH
Confidence 9999999999 9999998887543
No 50
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.1e-29 Score=244.73 Aligned_cols=139 Identities=40% Similarity=0.678 Sum_probs=127.1
Q ss_pred ccCCCC-CCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCChHHHHHHHHhhccCcc
Q 007931 443 ILGFDW-PASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSI 521 (584)
Q Consensus 443 ~~~~~~-~~~p~~~~~~~al~~L~~~g~i~~~~~lT~~lG~~~~~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~l~~~~~ 521 (584)
...|+| +|||+.+++.+|++.|..+||||++|+|| ++|+.|++||++|++||||+.|..++|.+++++|+|+|+++++
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT-~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~ 83 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLT-RLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV 83 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBC-HHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCC
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCcc-HHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCcc
Confidence 356788 99999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred cccCcccHHHHHHHHhhccCCCCCHHHHHHHHHHHHHcCCcHHHHHHhCCCHHHHHHHHHh
Q 007931 522 WVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMVRNLIW 582 (584)
Q Consensus 522 f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~~~~a~~~ 582 (584)
|..|.+.+++++++|.+|....|||++++|+|++|.+.+.+.+||++||||+++|+++.+.
T Consensus 84 f~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~i 144 (270)
T 3i4u_A 84 FYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDI 144 (270)
T ss_dssp BCCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHH
T ss_pred ccCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888899999999999999998763
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.96 E-value=1.4e-28 Score=271.13 Aligned_cols=319 Identities=16% Similarity=0.103 Sum_probs=178.0
Q ss_pred CchHHHHHHHHHHhc-----CCEEEEEcCCCChHHHHHHHHHHh---cCcc-----CCCeEEEEeCchHHHHHHHHHHHH
Q 007931 50 PVYKYRTAILYLVET-----HATTIIVGETGSGKTTQIPQYLKE---AGWA-----DGGRVIACTQPRRLAVQAVASRVA 116 (584)
Q Consensus 50 P~~~~~~~il~~l~~-----~~~viv~a~TGsGKT~~ip~~l~~---~~~~-----~~~~~I~v~~~r~la~~~~~~~~~ 116 (584)
..+.+|.+.+..+.+ ++.+++++|||||||.++-.++.. ..+. ...++++++|++.|+.|...+.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~- 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF- 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC-
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH-
Confidence 567788777776654 577899999999999654333322 2211 34678999999999877542222
Q ss_pred HHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHcc-----CCCCCCCcEEEEeCCCcCccchhHHHHHHHHHH
Q 007931 117 EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMD-----DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ 191 (584)
Q Consensus 117 ~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~-----~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~ 191 (584)
+.++..++...+ ..... ..+|+|+|++.|...... .....++++||+|||| |....+ ...++.+.
T Consensus 257 ~~~~~~~~~~~~------~~~~~-~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il 326 (590)
T 3h1t_A 257 TPFGDARHKIEG------GKVVK-SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREIL 326 (590)
T ss_dssp TTTCSSEEECCC--------CCS-SCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHH
T ss_pred Hhcchhhhhhhc------cCCCC-CCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHH
Confidence 223332221111 11222 689999999999876532 1225678999999999 554321 12334444
Q ss_pred HhcCCceEEEEecccC---hHHHHHHhhcCCCCCCCcccccCCCCCC-eEEEECCc--cccce---------------EE
Q 007931 192 RCRSDLRLIISSATIE---AKSMSAFFHARKGRRGLEGVELVPRLEP-AILSVEGR--GFNVQ---------------IH 250 (584)
Q Consensus 192 ~~~~~~~vi~~SAT~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~v~---------------~~ 250 (584)
...++.++++||||+. ......+|+..................+ .+..+... ..... ..
T Consensus 327 ~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (590)
T 3h1t_A 327 EYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGE 406 (590)
T ss_dssp HHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------------
T ss_pred HhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccccc
Confidence 4455678999999982 2446677764321111110000000000 01111000 00000 00
Q ss_pred ecCCCcc------hHHHHHHHHHHHHH-hcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHH
Q 007931 251 YVEEPVS------DYVQAAVSTVLLIH-DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAE 323 (584)
Q Consensus 251 ~~~~~~~------~~~~~~~~~i~~~~-~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 323 (584)
|...... .........+.... .....+++||||+++++++.+++.|.+......... ...+..+||+++. +
T Consensus 407 ~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~~i~g~~~~-~ 484 (590)
T 3h1t_A 407 YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKH-PDYVARVTSEEGK-I 484 (590)
T ss_dssp --CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTC-TTSEEECSSTTHH-H
T ss_pred CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccC-CCeEEEEeCCChH-H
Confidence 0000000 01112222232222 224568899999999999999999988644321111 2237788998764 7
Q ss_pred HhcccCCCCCCCcE---EEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCC
Q 007931 324 QEQVFSPTPRGKRK---VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP 399 (584)
Q Consensus 324 r~~i~~~~~~g~~~---vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~ 399 (584)
|+++++.|++|..+ |++||+++++|+|+|++++||.++. +.|...|+||+||+||..+
T Consensus 485 r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~------------------~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 485 GKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARV------------------VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESC------------------CCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEec------------------CCChHHHHHHHhhhcccCc
Confidence 89999999988766 8999999999999999999998665 7789999999999999854
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.96 E-value=3.7e-28 Score=265.05 Aligned_cols=319 Identities=18% Similarity=0.193 Sum_probs=189.9
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCcceeEE
Q 007931 52 YKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEV 127 (584)
Q Consensus 52 ~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~v 127 (584)
+..|......+.+++ |..++|||||| +.+|.++... .+.++++++|+|.||.| .....+.+.+|..++..+
T Consensus 76 ~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~ 150 (853)
T 2fsf_A 76 FDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINL 150 (853)
T ss_dssp CHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred ChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 444444444555666 89999999999 6667654322 34568999999999987 556778888899888777
Q ss_pred eeEeeccCcCCCCCceEEEechHHH-HHHHccC-------CCCCCCcEEEEeCCCcCccch---------------hHHH
Q 007931 128 GYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIST---------------DILL 184 (584)
Q Consensus 128 g~~~~~~~~~~~~~~~I~~~T~~~l-l~~l~~~-------~~l~~~~~iIiDE~Her~~~~---------------d~l~ 184 (584)
|........... .++|+|+||+.| ++.+..+ ..++++.++||||||.-..+. ++..
T Consensus 151 GG~~~~~r~~~~-~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~ 229 (853)
T 2fsf_A 151 PGMPAPAKREAY-AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYK 229 (853)
T ss_dssp TTCCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC---------
T ss_pred CCCCHHHHHHhc-CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHH
Confidence 743221111122 589999999999 6666543 237899999999999322121 1211
Q ss_pred ---HHHHHHHHh-----------------cCCceEE------------------------EEecccCh--HHHH-----H
Q 007931 185 ---GLLKKIQRC-----------------RSDLRLI------------------------ISSATIEA--KSMS-----A 213 (584)
Q Consensus 185 ---~~l~~~~~~-----------------~~~~~vi------------------------~~SAT~~~--~~~~-----~ 213 (584)
.+++.+... .++.++. ++|||... ..+. .
T Consensus 230 ~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~ 309 (853)
T 2fsf_A 230 RVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAH 309 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHH
Confidence 222222110 0122322 77888521 1111 0
Q ss_pred -HhhcCC-------C-------------CC----CCc-------ccccCC-CCC--------------------------
Q 007931 214 -FFHARK-------G-------------RR----GLE-------GVELVP-RLE-------------------------- 234 (584)
Q Consensus 214 -~~~~~~-------~-------------~~----~~~-------~~~~~~-~~~-------------------------- 234 (584)
+|.... . .. +.+ .+...+ ...
T Consensus 310 ~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te 389 (853)
T 2fsf_A 310 ALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTE 389 (853)
T ss_dssp -----------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCC
T ss_pred HHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhH
Confidence 111000 0 00 000 000000 000
Q ss_pred ---------CeEEEECCccccce------EEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHH
Q 007931 235 ---------PAILSVEGRGFNVQ------IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE 299 (584)
Q Consensus 235 ---------~~~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~ 299 (584)
..++.+|. ..|+. ..|. ...+....++..+...+ ..+.++||||+|++.++.+++.|.+.
T Consensus 390 ~~ef~~iY~l~vv~IPt-n~p~~R~d~~d~v~~--~~~~K~~al~~~i~~~~--~~gqpvLVft~sie~se~Ls~~L~~~ 464 (853)
T 2fsf_A 390 AFEFSSIYKLDTVVVPT-NRPMIRKDLPDLVYM--TEAEKIQAIIEDIKERT--AKGQPVLVGTISIEKSELVSNELTKA 464 (853)
T ss_dssp HHHHHHHHCCEEEECCC-SSCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCcEEEcCC-CCCceeecCCcEEEe--CHHHHHHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHHC
Confidence 01122221 11111 1111 11222233333333332 34567999999999999999999886
Q ss_pred hhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCC--------------------------
Q 007931 300 ARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG-------------------------- 353 (584)
Q Consensus 300 ~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~-------------------------- 353 (584)
++....+||.+...++..+.++++.| .|+||||+|++|+||+.
T Consensus 465 ---------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~ 533 (853)
T 2fsf_A 465 ---------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 533 (853)
T ss_dssp ---------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHH
T ss_pred ---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHh
Confidence 78899999999988888888999988 59999999999999997
Q ss_pred ------e-----EEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHH
Q 007931 354 ------I-----VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (584)
Q Consensus 354 ------v-----~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (584)
| .+||++.+ |-|...|.||+||+||. .+|.+..+++.++
T Consensus 534 ~~~~~~V~~~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 534 QVRHDAVLEAGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHTTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhhHHHhcCCcEEEEccC------------------CCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 4 69999888 88999999999999999 8999888877543
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=2.4e-27 Score=258.95 Aligned_cols=322 Identities=17% Similarity=0.146 Sum_probs=207.8
Q ss_pred chHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCcceeE
Q 007931 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEE 126 (584)
Q Consensus 51 ~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~ 126 (584)
-+..|...+..+.+++ |..++||+||| +.+|.++... .+.++++++|++.||.+ +....+.+.+|..++..
T Consensus 112 P~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i 186 (922)
T 1nkt_A 112 PFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVI 186 (922)
T ss_dssp CCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 3444544445555666 99999999999 6667665332 24568999999999987 56677888899998877
Q ss_pred EeeEeeccCcCCCCCceEEEechHHH-HHHHccC-------CCCCCCcEEEEeCCCcCccc---------------hhHH
Q 007931 127 VGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIS---------------TDIL 183 (584)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~~~T~~~l-l~~l~~~-------~~l~~~~~iIiDE~Her~~~---------------~d~l 183 (584)
+|.....+..... .++|+|+||+.| ++.+..+ ..++.+.++||||||.-..+ +++.
T Consensus 187 ~gg~~~~~r~~~y-~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y 265 (922)
T 1nkt_A 187 LATMTPDERRVAY-NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWY 265 (922)
T ss_dssp CTTCCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHH
T ss_pred eCCCCHHHHHHhc-CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHH
Confidence 7743222112222 589999999999 6666543 23789999999999932112 3454
Q ss_pred HHHHHHHHHhc---------CCceEE-----------------EEecccCh--HHHHH------HhhcCC----------
Q 007931 184 LGLLKKIQRCR---------SDLRLI-----------------ISSATIEA--KSMSA------FFHARK---------- 219 (584)
Q Consensus 184 ~~~l~~~~~~~---------~~~~vi-----------------~~SAT~~~--~~~~~------~~~~~~---------- 219 (584)
..+-+.+.... ++.++. ++|||... ..+.+ +|....
T Consensus 266 ~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vv 345 (922)
T 1nkt_A 266 TEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVL 345 (922)
T ss_dssp HHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEE
T ss_pred HHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceE
Confidence 44444444444 456777 78999631 22211 222110
Q ss_pred -CCC-CCcccc---------------cCCCCCC---eEEEEC---------------C----------ccccceEEecCC
Q 007931 220 -GRR-GLEGVE---------------LVPRLEP---AILSVE---------------G----------RGFNVQIHYVEE 254 (584)
Q Consensus 220 -~~~-~~~~~~---------------~~~~~~~---~~~~~~---------------~----------~~~~v~~~~~~~ 254 (584)
+.. ..+..+ ......+ ..-.+. | ..|..++...+.
T Consensus 346 iVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPt 425 (922)
T 1nkt_A 346 IVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPT 425 (922)
T ss_dssp EBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCC
T ss_pred EEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCC
Confidence 000 000000 0000000 011111 0 001111111111
Q ss_pred ---------------CcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCC
Q 007931 255 ---------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGL 319 (584)
Q Consensus 255 ---------------~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 319 (584)
...+....++..+...+. .+.++||||+|++.++.+++.|.+. ++....+||..
T Consensus 426 n~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~vLnak~ 494 (922)
T 1nkt_A 426 NMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTKR---------RIPHNVLNAKY 494 (922)
T ss_dssp SSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHT---------TCCCEEECSSC
T ss_pred CCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCEEEecCCh
Confidence 112223333344433332 3557999999999999999999886 78899999999
Q ss_pred CHHHHhcccCCCCCCCcEEEEeCCCCccccccCCe---------------------------------------------
Q 007931 320 SRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI--------------------------------------------- 354 (584)
Q Consensus 320 ~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v--------------------------------------------- 354 (584)
...++..+.+.++.| .|+||||+|++|+||+.+
T Consensus 495 ~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (922)
T 1nkt_A 495 HEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAK 572 (922)
T ss_dssp HHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhh
Confidence 888888888999888 699999999999999975
Q ss_pred -------EEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 355 -------VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 355 -------~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
.+||++.+ |-|...|.||+||+||. .||.+..+++.+
T Consensus 573 ~V~~~GGlhVI~te~------------------pes~riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 573 EVIEAGGLYVLGTER------------------HESRRIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HHHHTTSEEEEECSC------------------CSSHHHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HHHhcCCcEEEeccC------------------CCCHHHHHHHhcccccCCCCeeEEEEechh
Confidence 69999888 88999999999999999 899988777643
No 54
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.95 E-value=8.1e-27 Score=226.14 Aligned_cols=180 Identities=34% Similarity=0.554 Sum_probs=153.6
Q ss_pred cchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCC----CeEEEEeCchHHHHHHHH
Q 007931 37 YGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG----GRVIACTQPRRLAVQAVA 112 (584)
Q Consensus 37 ~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~----~~~I~v~~~r~la~~~~~ 112 (584)
..+..+.+.+..+|++.+|++++..+.++++++++||||||||++++.++++.....+ .++++..|+ +..+.+++
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~la~q~~ 126 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPR-RISAVSVA 126 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESS-HHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccc-hHHHHHHH
Confidence 3456677888999999999999999999999999999999999988887766533222 245555555 55556788
Q ss_pred HHHHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH
Q 007931 113 SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (584)
Q Consensus 113 ~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~ 192 (584)
++++..++..+|..+||.++.+.......++|+|+|||+|++.+.. .+.++++||+||+|+|+.+.++....++.+..
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 9999999999999999999888776644799999999999999876 38999999999999989999999999999988
Q ss_pred hcCCceEEEEecccChHHHHHHhhcCC
Q 007931 193 CRSDLRLIISSATIEAKSMSAFFHARK 219 (584)
Q Consensus 193 ~~~~~~vi~~SAT~~~~~~~~~~~~~~ 219 (584)
..++.|+++||||++.+.+++||++.+
T Consensus 205 ~~~~~~~il~SAT~~~~~~~~~~~~~p 231 (235)
T 3llm_A 205 AYPEVRIVLMSATIDTSMFCEYFFNCP 231 (235)
T ss_dssp HCTTSEEEEEECSSCCHHHHHHTTSCC
T ss_pred hCCCCeEEEEecCCCHHHHHHHcCCCC
Confidence 888999999999998888999999876
No 55
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=3.2e-27 Score=224.87 Aligned_cols=172 Identities=21% Similarity=0.285 Sum_probs=146.5
Q ss_pred HHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCC
Q 007931 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI 344 (584)
Q Consensus 265 ~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i 344 (584)
..+..+.....++++||||+++.+++.+++.|.+. ++.+.++||+|++++|.++++.|++|.++|||||++
T Consensus 20 ~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~ 90 (212)
T 3eaq_A 20 EVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV 90 (212)
T ss_dssp HHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT
T ss_pred HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh
Confidence 33444444456789999999999999999999886 788999999999999999999999999999999999
Q ss_pred CccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHH-------------
Q 007931 345 AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY------------- 410 (584)
Q Consensus 345 ~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~------------- 410 (584)
+++|+|+|++++||++|+ |.|.++|.||+|||||. ++|.||.++++.+
T Consensus 91 ~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 91 AARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp TTCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred hhcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 999999999999999988 88999999999999999 6899999999775
Q ss_pred -HhhhCCCCCCCcccccchhHHHHHHHhcCCCCccCC-----CCCCCCCHHHHHHHHHHH
Q 007931 411 -FVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF-----DWPASPPPEAMIRALEVL 464 (584)
Q Consensus 411 -~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~-----~~~~~p~~~~~~~al~~L 464 (584)
+.. +.....+|+.+..+..+++.++.++..+...| +++++|+++.+..|+..|
T Consensus 153 ~~~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 153 RFKR-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp CCEE-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCee-cCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 222 45556678888899999999998876555445 567888999999988765
No 56
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.92 E-value=1.7e-25 Score=257.66 Aligned_cols=331 Identities=15% Similarity=0.135 Sum_probs=199.4
Q ss_pred CCchHHHHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHhcCc-cCCCeEEEEeCchHHHHHHHHHHHHHHhCCccee
Q 007931 49 LPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (584)
Q Consensus 49 lP~~~~~~~il~~l~~--~~~viv~a~TGsGKT~~ip~~l~~~~~-~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~ 125 (584)
..++.+|.+++..+.. +..++++++||+|||.++-.++..... ...+++++++|+ .+.. ++...+.+.++..+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~-Qw~~E~~~~f~l~v~v 229 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQH-QWLVEMLRRFNLRFAL 229 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHH-HHHHHHHHHSCCCCEE
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHH-HHHHHHHHHhCCCEEE
Confidence 4578899888877665 458999999999999665444433211 123468888888 7765 4555566667776654
Q ss_pred EEeeEee---ccCcCCCCCceEEEechHHHHHHHccC--CCCCCCcEEEEeCCCcCccch---hHHHHHHHHHHHhcCCc
Q 007931 126 EVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIST---DILLGLLKKIQRCRSDL 197 (584)
Q Consensus 126 ~vg~~~~---~~~~~~~~~~~I~~~T~~~ll~~l~~~--~~l~~~~~iIiDE~Her~~~~---d~l~~~l~~~~~~~~~~ 197 (584)
..|.... ..........+|+++|++.+.+..... ....++++|||||+|.-.... ......++.+.. ...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~--~~~ 307 (968)
T 3dmq_A 230 FDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE--HVP 307 (968)
T ss_dssp CCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT--TCS
T ss_pred EccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh--cCC
Confidence 4332111 111122225789999999886421110 014578999999999432111 111223333322 344
Q ss_pred eEEEEecccC---hHH---HHHHhhcCCCC-------------------------CCCccc--c-cCCCC----------
Q 007931 198 RLIISSATIE---AKS---MSAFFHARKGR-------------------------RGLEGV--E-LVPRL---------- 233 (584)
Q Consensus 198 ~vi~~SAT~~---~~~---~~~~~~~~~~~-------------------------~~~~~~--~-~~~~~---------- 233 (584)
++++||||+- ..+ +..++...... ...... . .....
T Consensus 308 ~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp SEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGG
T ss_pred cEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHh
Confidence 6999999982 111 11111100000 000000 0 00000
Q ss_pred --------------------------CCeEEEECC---ccccce---EEecCCCc-------------------------
Q 007931 234 --------------------------EPAILSVEG---RGFNVQ---IHYVEEPV------------------------- 256 (584)
Q Consensus 234 --------------------------~~~~~~~~~---~~~~v~---~~~~~~~~------------------------- 256 (584)
....+.... ..+|.. ......+.
T Consensus 388 ~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (968)
T 3dmq_A 388 AANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDM 467 (968)
T ss_dssp GTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhh
Confidence 000000000 001000 00000000
Q ss_pred ----------------chHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCC
Q 007931 257 ----------------SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLS 320 (584)
Q Consensus 257 ----------------~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 320 (584)
..........+..+.....++++||||+++..++.+++.|.+.. ++.+..+||+|+
T Consensus 468 l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~--------g~~~~~lhG~~~ 539 (968)
T 3dmq_A 468 LYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE--------GIRAAVFHEGMS 539 (968)
T ss_dssp HCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT--------CCCEEEECTTSC
T ss_pred cChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc--------CCcEEEEeCCCC
Confidence 00001123344444444677899999999999999999997532 778999999999
Q ss_pred HHHHhcccCCCCCCC--cEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-
Q 007931 321 RAEQEQVFSPTPRGK--RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV- 397 (584)
Q Consensus 321 ~~~r~~i~~~~~~g~--~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~- 397 (584)
..+|.++++.|++|. .+|||||+++++|+|+|++++||.++. |.+.+.|.||+||+||.
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~------------------p~~~~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL------------------PFNPDLLEQRIGRLDRIG 601 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC------------------CSSHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC------------------CCCHHHHHHHhhccccCC
Confidence 999999999999998 999999999999999999999999777 78899999999999998
Q ss_pred CCc--EEEEccChH
Q 007931 398 RPG--KCYRLYTEE 409 (584)
Q Consensus 398 ~~G--~~~~l~~~~ 409 (584)
+.| .+|.++.+.
T Consensus 602 q~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 602 QAHDIQIHVPYLEK 615 (968)
T ss_dssp SCSCCEEEEEEETT
T ss_pred CCceEEEEEecCCC
Confidence 445 456655544
No 57
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=5.5e-26 Score=226.55 Aligned_cols=174 Identities=20% Similarity=0.264 Sum_probs=146.8
Q ss_pred HHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCcc
Q 007931 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAET 347 (584)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~ 347 (584)
..+.....++++||||+++++++.+++.|.+. ++.+.++||+|++.+|.++++.|++|.++||||||++++
T Consensus 20 ~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~ 90 (300)
T 3i32_A 20 SDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAAR 90 (300)
T ss_dssp HHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTC
T ss_pred HHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhc
Confidence 33333345789999999999999999999764 788999999999999999999999999999999999999
Q ss_pred ccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHH--------------Hh
Q 007931 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY--------------FV 412 (584)
Q Consensus 348 Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~--------------~~ 412 (584)
|+|+|++++||++|+ |.+..+|.||+|||||. ++|.||.++++.+ +.
T Consensus 91 Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~ 152 (300)
T 3i32_A 91 GLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFK 152 (300)
T ss_dssp STTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCE
T ss_pred CccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcce
Confidence 999999999999988 88999999999999999 7899999998765 22
Q ss_pred hhCCCCCCCcccccchhHHHHHHHhcCCCCccCC-----CCCCCCCHHHHHHHHHHHHHcCC
Q 007931 413 KEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF-----DWPASPPPEAMIRALEVLYSLGV 469 (584)
Q Consensus 413 ~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~-----~~~~~p~~~~~~~al~~L~~~g~ 469 (584)
. +.....||+.+..+..++++++.++..+...| +++++|+.+.+..|+..|.....
T Consensus 153 ~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 153 R-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp E-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred E-eCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 3 55566788999999999999998766555555 46778999999999999976654
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.91 E-value=7.2e-24 Score=228.91 Aligned_cols=324 Identities=14% Similarity=0.096 Sum_probs=187.1
Q ss_pred CCchHHHHHHHHHH----hcCCEEEEEcCCCChHHHHHHHHHHhcC-ccCCCeEEEEeCchHHHHHHHHHHHHHHhC-Cc
Q 007931 49 LPVYKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRLAVQAVASRVAEEMG-VK 122 (584)
Q Consensus 49 lP~~~~~~~il~~l----~~~~~viv~a~TGsGKT~~ip~~l~~~~-~~~~~~~I~v~~~r~la~~~~~~~~~~~~~-~~ 122 (584)
..++.+|.+.+.++ ..+..+|+..+||+|||.++-.++.... ....+++++++| ..+.. ++.+.+.+... ..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~-qw~~e~~~~~~~~~ 113 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLK-NWEEELSKFAPHLR 113 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHH-HHHHHHHHHCTTSC
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHH-HHHHHHHHHCCCce
Confidence 45788888887766 4567899999999999966543433221 123356888888 45654 45555555542 23
Q ss_pred ceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEE
Q 007931 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (584)
Q Consensus 123 vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~ 202 (584)
+....|.. .. ......+|+++|++.+.+... ....++++||+||||. ..+... ...+.+... +..+.+++
T Consensus 114 v~~~~g~~---~~-~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~-~kn~~~--~~~~~l~~l-~~~~~l~L 183 (500)
T 1z63_A 114 FAVFHEDR---SK-IKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQN-IKNPQT--KIFKAVKEL-KSKYRIAL 183 (500)
T ss_dssp EEECSSST---TS-CCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGG-GSCTTS--HHHHHHHTS-CEEEEEEE
T ss_pred EEEEecCc---hh-ccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccc-cCCHhH--HHHHHHHhh-ccCcEEEE
Confidence 32222211 11 112257899999999865432 1134689999999993 322211 112222222 34578999
Q ss_pred eccc---ChHHHHH---HhhcCCCCC------------------------------CCcccc----cCCCCCCe---EEE
Q 007931 203 SATI---EAKSMSA---FFHARKGRR------------------------------GLEGVE----LVPRLEPA---ILS 239 (584)
Q Consensus 203 SAT~---~~~~~~~---~~~~~~~~~------------------------------~~~~~~----~~~~~~~~---~~~ 239 (584)
|||+ +..++.. |+....... ..+... .....++. .+.
T Consensus 184 TaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~ 263 (500)
T 1z63_A 184 TGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVY 263 (500)
T ss_dssp CSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEE
Confidence 9999 2333222 111100000 000000 00000000 000
Q ss_pred ECCccccceEEec-------CC---C----------------------------------cchHHHHHHHHHHHHHhcCC
Q 007931 240 VEGRGFNVQIHYV-------EE---P----------------------------------VSDYVQAAVSTVLLIHDKEP 275 (584)
Q Consensus 240 ~~~~~~~v~~~~~-------~~---~----------------------------------~~~~~~~~~~~i~~~~~~~~ 275 (584)
++-.....+ .|. .. . .........+.+... ...
T Consensus 264 ~~l~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~--~~~ 340 (500)
T 1z63_A 264 CNLTPEQAA-MYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEA--LDE 340 (500)
T ss_dssp ECCCHHHHH-HHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHH--HTT
T ss_pred cCCCHHHHH-HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHH--Hcc
Confidence 110000000 000 00 0 000000111111111 135
Q ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC-CcE-EEEeCCCCccccccCC
Q 007931 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTLEG 353 (584)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-~~~-vlvaT~i~e~Gidip~ 353 (584)
+.++|||+.....++.+++.|.+.. +..+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|+
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 6789999999999999999998753 56788899999999999999999888 454 8999999999999999
Q ss_pred eEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEccChHHHhh
Q 007931 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 354 v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (584)
+++||.++. |.+.+.+.||+||++|. ++..+|+++++...+.
T Consensus 413 ~~~vi~~d~------------------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 413 ANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp CSEEEESSC------------------CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred CCEEEEeCC------------------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 999998766 66778888999999998 3446788888765543
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.90 E-value=2.7e-23 Score=237.61 Aligned_cols=314 Identities=13% Similarity=0.026 Sum_probs=178.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCc--cCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEee-ccCcCCCCCc
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIR-FEDFTNKDLT 142 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~--~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~-~~~~~~~~~~ 142 (584)
+..+++++||||||..+- .+..... ....++++++|.+.|+.|. .+.+.......+.. +.+.. ..........
T Consensus 301 ~~gli~~~TGSGKT~t~~-~l~~ll~~~~~~~rvLvlvpr~eL~~Q~-~~~f~~f~~~~v~~--~~s~~~l~~~L~~~~~ 376 (1038)
T 2w00_A 301 SGGYIWHTTGSGKTLTSF-KAARLATELDFIDKVFFVVDRKDLDYQT-MKEYQRFSPDSVNG--SENTAGLKRNLDKDDN 376 (1038)
T ss_dssp GSEEEEECTTSSHHHHHH-HHHHHHTTCTTCCEEEEEECGGGCCHHH-HHHHHTTSTTCSSS--SCCCHHHHHHHHCSSC
T ss_pred CCEEEEecCCCCHHHHHH-HHHHHHHhcCCCceEEEEeCcHHHHHHH-HHHHHHhccccccc--ccCHHHHHHHhcCCCC
Confidence 578999999999994432 2222111 1235789999999888763 33333322211211 11110 0000111258
Q ss_pred eEEEechHHHHHHHccCC---CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccCh-------HHHH
Q 007931 143 AIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA-------KSMS 212 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~---~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~-------~~~~ 212 (584)
+|+|+|++.|...+.... .+.+..+||+|||| |+...+. .+.+....++.+++++|||+.. ....
T Consensus 377 ~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~ 451 (1038)
T 2w00_A 377 KIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKNLKKKFKRYYQFGFTGTPIFPENALGSETTA 451 (1038)
T ss_dssp CEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHH
T ss_pred CEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHHHHHhCCcccEEEEeCCccccccchhhhHHH
Confidence 999999999998765432 35678999999999 6654433 3444455677899999999932 2456
Q ss_pred HHhhcCCCCCCCcccccCCCCCCeEEEECCc--ccc---ce--------EEec-CCCcchHHHHHHHHHHHHH-hc----
Q 007931 213 AFFHARKGRRGLEGVELVPRLEPAILSVEGR--GFN---VQ--------IHYV-EEPVSDYVQAAVSTVLLIH-DK---- 273 (584)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---v~--------~~~~-~~~~~~~~~~~~~~i~~~~-~~---- 273 (584)
++|+..................+..+...+. .+. ++ .... .....+.....+..++... ..
T Consensus 452 ~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~ 531 (1038)
T 2w00_A 452 SVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRT 531 (1038)
T ss_dssp HHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhh
Confidence 6776432111100000000011111111110 000 00 0000 0001112233333332221 11
Q ss_pred ---CCCCCEEEEeCcHHHHHHHHHHHHHHhhhc---cCCCCCeEE-EEecCC----------C----------CHH----
Q 007931 274 ---EPPGDILVFLTGQDDIDATIQLLTEEARTS---KKNSSGLII-LPLYSG----------L----------SRA---- 322 (584)
Q Consensus 274 ---~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~---~~~~~~~~v-~~lh~~----------l----------~~~---- 322 (584)
..+++.+|||+++.++..+++.|.+..... .....++.+ ..+|++ + ++.
T Consensus 532 ~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~ 611 (1038)
T 2w00_A 532 FPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEF 611 (1038)
T ss_dssp SSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHH
T ss_pred cccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHH
Confidence 134579999999999999999998875321 011123444 345542 2 221
Q ss_pred -------------------------HHhcccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccc
Q 007931 323 -------------------------EQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENL 377 (584)
Q Consensus 323 -------------------------~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l 377 (584)
+|+.+.+.|++|..+|||+|+++.+|+|+|.+.+ +..+.
T Consensus 612 l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~t-lylDk--------------- 675 (1038)
T 2w00_A 612 LDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNT-LFVDK--------------- 675 (1038)
T ss_dssp HHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEE-EEEES---------------
T ss_pred HHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccE-EEEcc---------------
Confidence 3677888899999999999999999999999954 44333
Q ss_pred eeeeccHHhHHHhccccCCCCC-----cEEEEccC
Q 007931 378 VVAPISKASARQRAGRAGRVRP-----GKCYRLYT 407 (584)
Q Consensus 378 ~~~~~s~~~~~QR~GRaGR~~~-----G~~~~l~~ 407 (584)
|.+...++||+||+||..+ |.++.+..
T Consensus 676 ---pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 676 ---NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp ---CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred ---CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 7788899999999999843 66666655
No 60
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.89 E-value=1.4e-22 Score=216.83 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEE
Q 007931 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (584)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~v 338 (584)
....++..+...+. .+.++||||+|++.++.+++.|.+. ++....+||+....++..+.+.++.| .|
T Consensus 459 K~~al~~~I~~~~~--~gqpVLVFt~S~e~sE~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~V 525 (822)
T 3jux_A 459 KYEKIVEEIEKRYK--KGQPVLVGTTSIEKSELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG--MV 525 (822)
T ss_dssp HHHHHHHHHHHHHH--HTCCEEEEESSHHHHHHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT--CE
T ss_pred HHHHHHHHHHHHhh--CCCCEEEEECCHHHHHHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC--eE
Confidence 33444444444433 3567999999999999999999775 78889999997766666666666665 59
Q ss_pred EEeCCCCccccccC--------CeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 339 VISTNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 339 lvaT~i~e~Gidip--------~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
+||||+|++|+||+ ++.+||++.+ |-|...|.||+||+||. .+|.++.+++.+
T Consensus 526 tVATdmAgRGtDI~lg~~V~~~GglhVInte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsle 587 (822)
T 3jux_A 526 TIATNMAGRGTDIKLGPGVAELGGLCIIGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLE 587 (822)
T ss_dssp EEEETTTTTTCCCCCCTTTTTTTSCEEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETT
T ss_pred EEEcchhhCCcCccCCcchhhcCCCEEEecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEechh
Confidence 99999999999998 6779999888 89999999999999999 899998888754
Q ss_pred H
Q 007931 410 Y 410 (584)
Q Consensus 410 ~ 410 (584)
+
T Consensus 588 D 588 (822)
T 3jux_A 588 D 588 (822)
T ss_dssp S
T ss_pred H
Confidence 3
No 61
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=7.9e-20 Score=202.28 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=99.2
Q ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCc---EEEEeCCCCccccc
Q 007931 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR---KVVISTNIAETSLT 350 (584)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~---~vlvaT~i~e~Gid 350 (584)
..+.++|||+.....++.+.+.|... ++.+..+||+++.++|.++++.|++|.. .+|++|.++++|+|
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 34678999999999999999998876 7789999999999999999999988754 58999999999999
Q ss_pred cCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEccChHHHhh
Q 007931 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 351 ip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (584)
++++++||.++. |-+++.+.|++||++|. ++..+|+++++...+.
T Consensus 485 l~~a~~Vi~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 485 LIGANRLVMFDP------------------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp CTTEEEEEECSC------------------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred cccCCEEEEECC------------------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 999999999777 88999999999999998 3457889988765544
No 62
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.85 E-value=9.2e-21 Score=182.01 Aligned_cols=181 Identities=15% Similarity=0.100 Sum_probs=122.2
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcC--ccCCCeEEEEeCc
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQP 103 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~--~~~~~~~I~v~~~ 103 (584)
..+|.++++++.....+.+... -..+.+|.+++..+.+++++++++|||||||......++... ...+.++++++|+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~-~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGF-EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTC-CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHHCCC-CCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 3569999999998888866533 346778888888888999999999999999955333333221 1234578999999
Q ss_pred hHHHHHHHH--HHHHHHhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccch
Q 007931 104 RRLAVQAVA--SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (584)
Q Consensus 104 r~la~~~~~--~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~ 180 (584)
+.++.|... +.+....+..++...|.....+.......++|+|+||+.+.+.+..... +.++++||+|||| +..+.
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~ 170 (224)
T 1qde_A 92 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSS 170 (224)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHT
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh-HHhhh
Confidence 998876322 2233344566666666443322222222589999999999988876554 8899999999999 33333
Q ss_pred hHHHHHHHHHHHhcCCceEEEEecccCh
Q 007931 181 DILLGLLKKIQRCRSDLRLIISSATIEA 208 (584)
Q Consensus 181 d~l~~~l~~~~~~~~~~~vi~~SAT~~~ 208 (584)
++...+.+.+...+++.++++||||++.
T Consensus 171 ~~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 171 GFKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp TCHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred hhHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 3433344444445678899999999944
No 63
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.3e-21 Score=217.00 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=99.4
Q ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCc---EEEEeCCCCccccc
Q 007931 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR---KVVISTNIAETSLT 350 (584)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~---~vlvaT~i~e~Gid 350 (584)
..+.++|||+.....++.+.+.|... ++.+..+||+++.++|+++++.|+++.. .+|++|.+++.|||
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlN 640 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGIN 640 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCC
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCC
Confidence 34578999999999999999999776 7889999999999999999999988543 59999999999999
Q ss_pred cCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEccChHHHhh
Q 007931 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 351 ip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (584)
++++++||.++. |-+++.+.||.||++|. ++..+|+|+++...+.
T Consensus 641 L~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 641 LMTADTVVIFDS------------------DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp CTTCCEEEESSC------------------CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred ccccceEEEecC------------------CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 999999998766 77888999999999997 5678899999876654
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=175.76 Aligned_cols=128 Identities=16% Similarity=0.259 Sum_probs=106.0
Q ss_pred HHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCC
Q 007931 264 VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN 343 (584)
Q Consensus 264 ~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~ 343 (584)
...+..+......+++||||+++..++.+++.|.+. ++.+..+||++++.+|.++++.|++|..+|||||+
T Consensus 22 ~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 22 YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp HHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 344555555566789999999999999999999764 77899999999999999999999999999999999
Q ss_pred CCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHh
Q 007931 344 IAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (584)
Q Consensus 344 i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (584)
++++|+|+|++++||+++... ++. ...+..+|.||+|||||. ++|.|+.++++.+..
T Consensus 93 ~~~~Gid~~~~~~Vi~~d~p~----~~~--------~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 93 VCARGIDVKQVTIVVNFDLPV----KQG--------EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp SCCTTTCCTTEEEEEESSCCC------C--------CSCCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred chhcCCCcccCCEEEEeCCCC----Ccc--------ccCCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 999999999999999987710 000 017899999999999998 789999999876543
No 65
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.84 E-value=7.1e-21 Score=185.85 Aligned_cols=192 Identities=19% Similarity=0.131 Sum_probs=132.2
Q ss_pred ccccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc--cCCCeEEEEe
Q 007931 24 FLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACT 101 (584)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~--~~~~~~I~v~ 101 (584)
....+|.++++++.....+.+.. -...+.+|.+++..+.+++++++++|||||||......++.... ..+.++++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g-~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLG-WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTT-CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred cccCCHHHcCCCHHHHHHHHHcC-CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 34567999999998887775543 34567888888899999999999999999999554433333211 1345689999
Q ss_pred CchHHHHHHH--HHHHHHHhCCcceeEEeeEeecc--CcCCCCCceEEEechHHHHHHHccCC--CCCCCcEEEEeCCCc
Q 007931 102 QPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRFE--DFTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHE 175 (584)
Q Consensus 102 ~~r~la~~~~--~~~~~~~~~~~vg~~vg~~~~~~--~~~~~~~~~I~~~T~~~ll~~l~~~~--~l~~~~~iIiDE~He 175 (584)
|+++|+.|.. .+++....+..++..+|.....+ ..... .++|+|+||++|.+.+.... .+.++++||+||||
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah- 196 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD- 196 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT-CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-
Confidence 9999887633 33444455666666555322111 11112 68999999999999887533 48899999999999
Q ss_pred CccchhHHHHHHHHHHHhcCCceEEEEecccCh--HHHHHHhhcC
Q 007931 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHAR 218 (584)
Q Consensus 176 r~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~--~~~~~~~~~~ 218 (584)
+..+.++...+.+.+...+++.++++||||++. ..+.+.+...
T Consensus 197 ~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~ 241 (249)
T 3ber_A 197 RILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKN 241 (249)
T ss_dssp HHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCC
Confidence 555555555555555556678999999999943 4455444333
No 66
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.84 E-value=1.1e-20 Score=171.96 Aligned_cols=135 Identities=19% Similarity=0.312 Sum_probs=112.8
Q ss_pred ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhc
Q 007931 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (584)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (584)
++.+|......+...... .+.....++++||||+++.+++.+++.|.+. ++.+..+||+|++.+|.+
T Consensus 10 i~~~~~~~~~~~K~~~L~----~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 10 IEHAVIQVREENKFSLLK----DVLMTENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp EEEEEEECCGGGHHHHHH----HHHHHHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred ceEEEEECChHHHHHHHH----HHHHhcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHH
Confidence 344444444444333333 3333345678999999999999999999775 788999999999999999
Q ss_pred ccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEc
Q 007931 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (584)
Q Consensus 327 i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (584)
+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||. ++|.|+.+
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~ 138 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVINYDL------------------PLEKESYVHRTGRTGRAGNKGKAISF 138 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSC------------------CSSHHHHHHHTTTSSCTTCCEEEEEE
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCC------------------CCCHHHHHHhccccCcCCCCceEEEE
Confidence 999999999999999999999999999999999887 88999999999999999 78999999
Q ss_pred cChHHHh
Q 007931 406 YTEEYFV 412 (584)
Q Consensus 406 ~~~~~~~ 412 (584)
+++.+..
T Consensus 139 ~~~~~~~ 145 (163)
T 2hjv_A 139 VTAFEKR 145 (163)
T ss_dssp ECGGGHH
T ss_pred ecHHHHH
Confidence 9876543
No 67
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.83 E-value=3.6e-20 Score=177.29 Aligned_cols=180 Identities=17% Similarity=0.117 Sum_probs=120.5
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc--cCCCeEEEEeCch
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPR 104 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~--~~~~~~I~v~~~r 104 (584)
.+|.++++++.....+.+.... ..+.+|.+++..+.+++++++++|||||||......++.... ..+.++++++|++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFY-KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCC-SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCHhhCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 4699999999988888664433 457788888888888999999999999999543333333222 2345789999999
Q ss_pred HHHHHHHHH--HHHHHh----CCcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcC
Q 007931 105 RLAVQAVAS--RVAEEM----GVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (584)
Q Consensus 105 ~la~~~~~~--~~~~~~----~~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her 176 (584)
+++.|.... .+.... +..++...|.....+. .......+|+|+||+.+.+.+..... +.++++||+||||.
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~- 161 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL- 161 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-
Confidence 998763322 233222 3444444443221111 11122678999999999998876554 78999999999993
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEecccCh
Q 007931 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (584)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~ 208 (584)
..+.++...+.+.+....++.+++++|||++.
T Consensus 162 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 162 MLDMGFITDVDQIAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp HHHTTCHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred HhhhChHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 33333333333333345568899999999943
No 68
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=3e-20 Score=175.95 Aligned_cols=179 Identities=18% Similarity=0.147 Sum_probs=120.8
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhcCccCCCeEEEEeCch
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~--~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
.+|.++++++.....+.+... -..+.+|.+++..+.+++++++++|||||||. ++|.+........+.++|+++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~-~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGW-EKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTC-CSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHCCC-CCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 469999999998888866433 34577888888899999999999999999994 444333222222345789999999
Q ss_pred HHHHHHHHHHHHHHh----CCcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCcc
Q 007931 105 RLAVQAVASRVAEEM----GVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (584)
Q Consensus 105 ~la~~~~~~~~~~~~----~~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (584)
+++.| +.+.+.+.. +..++...|.....+. .......+|+|+||+.+.+.+..... +.++++||+||||. ..
T Consensus 82 ~L~~q-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~ 159 (206)
T 1vec_A 82 ELALQ-VSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK-LL 159 (206)
T ss_dssp HHHHH-HHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HT
T ss_pred HHHHH-HHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH-hH
Confidence 98875 333333322 4444444442211111 11122689999999999988876654 88999999999993 33
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEecccCh
Q 007931 179 STDILLGLLKKIQRCRSDLRLIISSATIEA 208 (584)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~ 208 (584)
+.++...+.+.+...+++.++++||||++.
T Consensus 160 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 160 SQDFVQIMEDIILTLPKNRQILLYSATFPL 189 (206)
T ss_dssp STTTHHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred hhCcHHHHHHHHHhCCccceEEEEEeeCCH
Confidence 334443333333345568999999999943
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.83 E-value=4.7e-20 Score=178.72 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=123.0
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc--cCCCeEEEEeC
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQ 102 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~--~~~~~~I~v~~ 102 (584)
+..+|.++++++.....+.+....- .+.+|.+++..+.+++++++++|||||||......++.... ..+.++++++|
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~-~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEK-PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCS-CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCC-CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 3467999999999888886654433 56777778888888889999999999999554444433322 23457899999
Q ss_pred chHHHHHHHHHHHH---HHhCCcceeEEeeEeeccCc--CCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcC
Q 007931 103 PRRLAVQAVASRVA---EEMGVKVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (584)
Q Consensus 103 ~r~la~~~~~~~~~---~~~~~~vg~~vg~~~~~~~~--~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her 176 (584)
+++++.|. .+.+. ...+..+...+|........ ......+|+|+||+.|.+.+..... +.++++||+|||| +
T Consensus 107 t~~L~~q~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~ 184 (237)
T 3bor_A 107 TRELAQQI-QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD-E 184 (237)
T ss_dssp SHHHHHHH-HHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH-H
T ss_pred cHHHHHHH-HHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch-H
Confidence 99998763 33333 23345554444432211111 1121379999999999998876554 8889999999999 3
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEecccCh--HHHHHHh
Q 007931 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFF 215 (584)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~--~~~~~~~ 215 (584)
..+.++...+.+.+....++.+++++|||++. ..+.+.+
T Consensus 185 ~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 225 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKF 225 (237)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHH
Confidence 33333333333444445678999999999943 4444433
No 70
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=1.1e-20 Score=173.44 Aligned_cols=132 Identities=18% Similarity=0.300 Sum_probs=112.0
Q ss_pred ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhc
Q 007931 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (584)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (584)
++.+|......+... .+..+......+++||||+++..++.+++.|.+. ++.+..+||+|++.+|.+
T Consensus 6 i~q~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 6 LQQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp CEEEEEECCGGGHHH----HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred eEEEEEECChHHHHH----HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHHH
Confidence 344444444444333 3334444456788999999999999999999875 778999999999999999
Q ss_pred ccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEc
Q 007931 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (584)
Q Consensus 327 i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (584)
+++.|++|..+|||||+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.++.+
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccCCCCcEEEEE
Confidence 999999999999999999999999999999999887 88999999999999999 78999999
Q ss_pred cChH
Q 007931 406 YTEE 409 (584)
Q Consensus 406 ~~~~ 409 (584)
+++.
T Consensus 135 ~~~~ 138 (172)
T 1t5i_A 135 VSDE 138 (172)
T ss_dssp ECSH
T ss_pred EcCh
Confidence 9864
No 71
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=179.01 Aligned_cols=189 Identities=19% Similarity=0.153 Sum_probs=125.7
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHH--HHHHH--HhcC--ccCCCeEE
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYL--KEAG--WADGGRVI 98 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~--ip~~l--~~~~--~~~~~~~I 98 (584)
...+|.++++++.....+.+. .--..+.+|.+++..+.+++++++++|||||||.. +|.+. .... ...+.+++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEA-QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHT-TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred ccCCHhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 456799999999988877654 34456788888889999999999999999999954 34321 1111 12345789
Q ss_pred EEeCchHHHHHHHHHHHHH---HhCCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccC--CCCCCCcEEEEeCC
Q 007931 99 ACTQPRRLAVQAVASRVAE---EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEA 173 (584)
Q Consensus 99 ~v~~~r~la~~~~~~~~~~---~~~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~--~~l~~~~~iIiDE~ 173 (584)
+++|+++|+.|.. +.+.+ ..+..++..+|.....+........+|+|+||+.+.+.+... ..+.++++||+|||
T Consensus 102 il~Pt~~L~~q~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 102 IISPTRELAYQTF-EVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp EECSSHHHHHHHH-HHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred EEeCCHHHHHHHH-HHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 9999999987643 33332 233555555553222111111126899999999999888654 33789999999999
Q ss_pred CcCccchhHHHHHHHHHHHhcCCceEEEEecccC--hHHHHHHhh
Q 007931 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFH 216 (584)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~--~~~~~~~~~ 216 (584)
| +..+.++...+.+.+....++.++++||||++ ...+.+.+.
T Consensus 181 h-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~ 224 (236)
T 2pl3_A 181 D-RILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSL 224 (236)
T ss_dssp H-HHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSC
T ss_pred H-HHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhC
Confidence 9 44444444444444444566889999999994 344555443
No 72
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.82 E-value=6.7e-21 Score=173.84 Aligned_cols=117 Identities=20% Similarity=0.393 Sum_probs=101.9
Q ss_pred HHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCcc
Q 007931 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAET 347 (584)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~ 347 (584)
..+......+++||||+++..++.+++.|.+. ++.+..+||++++.+|.++++.|++|..+|||||+++++
T Consensus 22 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 92 (165)
T 1fuk_A 22 TDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 92 (165)
T ss_dssp HHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTT
T ss_pred HHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhc
Confidence 33333446788999999999999999999875 778999999999999999999999999999999999999
Q ss_pred ccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHH
Q 007931 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (584)
Q Consensus 348 Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (584)
|+|+|++++||+++. |.+..+|.||+||+||. ++|.|+.++++.+.
T Consensus 93 G~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 93 GIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139 (165)
T ss_dssp TCCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred CCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEEcchHH
Confidence 999999999999887 78899999999999999 78999999986654
No 73
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.82 E-value=2.9e-20 Score=180.79 Aligned_cols=191 Identities=19% Similarity=0.138 Sum_probs=130.6
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcC-----ccCCCeE
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-----WADGGRV 97 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~-----~~~~~~~ 97 (584)
+..+|.++++++.....+.+....- .+.+|.+++..+.+++++++++||||||| +++|.+..-.. ...+.++
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~~~-~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNFTE-PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTCCS-CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCC-CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 3467999999998888886644433 46777778888888999999999999999 45554432111 1234568
Q ss_pred EEEeCchHHHHH--HHHHHHHHHhCCcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCC
Q 007931 98 IACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEA 173 (584)
Q Consensus 98 I~v~~~r~la~~--~~~~~~~~~~~~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~ 173 (584)
|+++|+++|+.| ...+.+....+..++...|....... .......+|+|+||++|++.+..... +.++++||+|||
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 185 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 185 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTH
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCH
Confidence 999999999986 33444555667766665553221111 00111478999999999998876654 899999999999
Q ss_pred CcCccchhHHHHHHHHHHHhcCCceEEEEecccC--hHHHHHHhhc
Q 007931 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHA 217 (584)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~--~~~~~~~~~~ 217 (584)
| +..+.++...+...+...+++.|+++||||++ ...+.+.+..
T Consensus 186 h-~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~ 230 (242)
T 3fe2_A 186 D-RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 230 (242)
T ss_dssp H-HHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred H-HHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCC
Confidence 9 44444444444444444567899999999994 4455554433
No 74
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.82 E-value=8.4e-20 Score=183.07 Aligned_cols=191 Identities=15% Similarity=0.051 Sum_probs=125.4
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcC--CEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEE
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIAC 100 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~--~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v 100 (584)
...+|.++++++.....+.+....-|... |.+++..+..+ ++++++|||||||| +++|.+-.-.....+.++|++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~i-Q~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKI-QENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHH-HHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHH-HHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 45679999999999998887666666554 55556666665 89999999999999 445544332222233468999
Q ss_pred eCchHHHHHHH--HHHHHHHh-CCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCC--CCCCCcEEEEeCCCc
Q 007931 101 TQPRRLAVQAV--ASRVAEEM-GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHE 175 (584)
Q Consensus 101 ~~~r~la~~~~--~~~~~~~~-~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~--~l~~~~~iIiDE~He 175 (584)
+|+|+|+.|.. .+.+.... +..++..+|... ....... ..+|+|+||++|++.+.... .+.++++|||||||
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad- 245 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-LERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD- 245 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCC-CCTTCCC-CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCcc-HhhhhcC-CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-
Confidence 99999988742 22232222 233333333221 1111222 67899999999999986633 38899999999999
Q ss_pred Cccc-hhHHHHHHHHHHHhcCCceEEEEecccC--hHHHHHHhhcCC
Q 007931 176 RSIS-TDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHARK 219 (584)
Q Consensus 176 r~~~-~d~l~~~l~~~~~~~~~~~vi~~SAT~~--~~~~~~~~~~~~ 219 (584)
+..+ ..+...+...+...+++.|++++|||++ ...+++.+...+
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p 292 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 292 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCC
Confidence 4443 3344444333444567899999999994 455665554433
No 75
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.81 E-value=2.2e-20 Score=173.53 Aligned_cols=136 Identities=20% Similarity=0.273 Sum_probs=98.8
Q ss_pred ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhc
Q 007931 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (584)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (584)
++..|......+........+.. ..+++++||||+++..++.+++.|... ++.+..+||++++.+|.+
T Consensus 20 i~q~~~~v~~~~K~~~L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r~~ 87 (185)
T 2jgn_A 20 ITQKVVWVEESDKRSFLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDREE 87 (185)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------CH
T ss_pred ceEEEEEeCcHHHHHHHHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHHHH
Confidence 44444444444433333333222 225678999999999999999999775 788999999999999999
Q ss_pred ccCCCCCCCcEEEEeCCCCccccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEc
Q 007931 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (584)
Q Consensus 327 i~~~~~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (584)
+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||. ++|.|+.+
T Consensus 88 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~ 149 (185)
T 2jgn_A 88 ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSF 149 (185)
T ss_dssp HHHHHHHTSSSEEEEEC------CCCSBSEEEESSC------------------CSSHHHHHHHHTTBCCTTSCEEEEEE
T ss_pred HHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHccccCCCCCCcEEEEE
Confidence 999999999999999999999999999999999887 88999999999999999 78999999
Q ss_pred cChHHHh
Q 007931 406 YTEEYFV 412 (584)
Q Consensus 406 ~~~~~~~ 412 (584)
+++.+..
T Consensus 150 ~~~~~~~ 156 (185)
T 2jgn_A 150 FNERNIN 156 (185)
T ss_dssp ECGGGGG
T ss_pred EchhhHH
Confidence 9976543
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.81 E-value=6.6e-20 Score=202.81 Aligned_cols=113 Identities=18% Similarity=0.156 Sum_probs=101.2
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCe
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v 354 (584)
.++++||||+++..++.+++.|.+. ++.+..+||++++.+|.++++.|++|..+|||||+++++|+|+|++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v 508 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEV 508 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCC
Confidence 4568999999999999999999876 6788999999999999999999999999999999999999999999
Q ss_pred EEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChH
Q 007931 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (584)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~ 409 (584)
++||+++..+.. .|.|..+|+||+|||||..+|.|+.++++.
T Consensus 509 ~lVI~~d~d~~G-------------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 509 SLVAILDADKEG-------------FLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp EEEEETTTTSCS-------------GGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred CEEEEeCCcccC-------------CCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 999997752211 167899999999999999999999999753
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.81 E-value=5.8e-20 Score=203.16 Aligned_cols=113 Identities=20% Similarity=0.189 Sum_probs=101.2
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCe
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v 354 (584)
.++++||||+|+..++.+++.|.+. ++.+..+||++++.+|.++++.|++|..+|+|||+++++|+|+|++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v 514 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCC
Confidence 4568999999999999999999876 6788999999999999999999999999999999999999999999
Q ss_pred EEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCCCCcEEEEccChH
Q 007931 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (584)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~ 409 (584)
++||+++..+. | .|.|..+|+||+|||||..+|.|+.++++.
T Consensus 515 ~lVi~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 515 SLVAILDADKE-------G------FLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp EEEEETTTTCC-------T------TTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred CEEEEeCcccc-------c------CCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 99999775221 1 167889999999999999999999999764
No 78
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.81 E-value=9.6e-20 Score=175.44 Aligned_cols=181 Identities=19% Similarity=0.203 Sum_probs=122.0
Q ss_pred cccccCC-CCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcC------ccCCC
Q 007931 25 LSSSLSS-ASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG------WADGG 95 (584)
Q Consensus 25 ~~~~~~~-l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~------~~~~~ 95 (584)
+..+|.+ +++++.....+.+....- .+.+|.+++..+.+++++++++||||||| +++|.+..-.. ...+.
T Consensus 17 p~~~f~~~~~l~~~l~~~l~~~g~~~-~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 17 PTCRFKDAFQQYPDLLKSIIRVGILK-PTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP 95 (228)
T ss_dssp CCCSHHHHHTTCHHHHHHHHHHTCCS-CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC
T ss_pred ChhhHhhhhccCHHHHHHHHHCCCCC-CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC
Confidence 3456888 789888888887765444 45677777888888999999999999999 45554432111 12456
Q ss_pred eEEEEeCchHHHHHHHHHHHHHH--hCCcceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEe
Q 007931 96 RVIACTQPRRLAVQAVASRVAEE--MGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVD 171 (584)
Q Consensus 96 ~~I~v~~~r~la~~~~~~~~~~~--~~~~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiD 171 (584)
++++++|+++|+.| +.+++.+. .+..+....|.....+.. ......+|+|+||+++.+.+..+.. +.++++||+|
T Consensus 96 ~~lil~Pt~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 174 (228)
T 3iuy_A 96 GMLVLTPTRELALH-VEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVID 174 (228)
T ss_dssp SEEEECSSHHHHHH-HHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEEC
T ss_pred cEEEEeCCHHHHHH-HHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEE
Confidence 68999999998875 44444443 244444444432221111 1112579999999999998877665 8999999999
Q ss_pred CCCcCccchhHHHHHHHHHHHhcCCceEEEEecccCh
Q 007931 172 EAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (584)
Q Consensus 172 E~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~~ 208 (584)
||| +..+.++...+.+.+...+++.|+++||||++.
T Consensus 175 Eah-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 175 EAD-KMLDMEFEPQIRKILLDVRPDRQTVMTSATWPD 210 (228)
T ss_dssp CHH-HHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCH
T ss_pred CHH-HHhccchHHHHHHHHHhCCcCCeEEEEEeeCCH
Confidence 999 444444444555555556778999999999954
No 79
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=1.3e-19 Score=173.38 Aligned_cols=188 Identities=17% Similarity=0.081 Sum_probs=123.2
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCcc--CCCeEEEEeCc
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQP 103 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~--~~~~~I~v~~~ 103 (584)
.++|.++++++.....+.+....- .+.+|.+++..+.+++++++++|||||||......++..... .+.++++++|+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~-~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEH-PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCC-CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCC-CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 356999999999988886644332 577888888888888899999999999995444333333221 23478999999
Q ss_pred hHHHHHHHHHHHHHHh----CCcceeEEeeEeeccCc--CCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcC
Q 007931 104 RRLAVQAVASRVAEEM----GVKVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (584)
Q Consensus 104 r~la~~~~~~~~~~~~----~~~vg~~vg~~~~~~~~--~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her 176 (584)
++++.|. .+.+.+.. +..++...|.....+.. ......+|+|+||+.+.+.+..... +.++++||+||||..
T Consensus 92 ~~L~~q~-~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 92 RELAFQI-SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp HHHHHHH-HHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHH
T ss_pred HHHHHHH-HHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHH
Confidence 9988763 33333332 45555444422110000 0111469999999999998876654 889999999999942
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHh
Q 007931 177 SISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFF 215 (584)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~ 215 (584)
.-..++...+.+.+....++.+++++|||+ +...+.+.+
T Consensus 171 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 211 (220)
T 1t6n_A 171 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 211 (220)
T ss_dssp HSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred hcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHH
Confidence 222344333333333455688999999999 345555433
No 80
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.81 E-value=1.2e-19 Score=171.97 Aligned_cols=189 Identities=21% Similarity=0.116 Sum_probs=124.1
Q ss_pred ccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc-----cCCCeEEEEeC
Q 007931 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-----ADGGRVIACTQ 102 (584)
Q Consensus 28 ~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~-----~~~~~~I~v~~ 102 (584)
+|.++++++.....+.+.. -...+.+|.+++..+.+++++++++|||||||......+..... ..+.++++++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~-~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRG-LTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTT-CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHHcC-CCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 5999999998888876543 33567788888888889999999999999999654444433321 23456899999
Q ss_pred chHHHHHHHHHHHHHHhC-CcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccc
Q 007931 103 PRRLAVQAVASRVAEEMG-VKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (584)
Q Consensus 103 ~r~la~~~~~~~~~~~~~-~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (584)
++.++.| +.+.+.+..+ ..++...|....... .......+|+++||+.+.+.+..... +.++++||+||||. ..+
T Consensus 81 ~~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~ 158 (207)
T 2gxq_A 81 TRELALQ-VASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE-MLS 158 (207)
T ss_dssp SHHHHHH-HHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HHH
T ss_pred CHHHHHH-HHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH-hhc
Confidence 9888765 4455554432 333333332111000 00012578999999999988876544 88999999999993 333
Q ss_pred hhHHHHHHHHHHHhcCCceEEEEecccC--hHHHHHHhhcCC
Q 007931 180 TDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHARK 219 (584)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~~vi~~SAT~~--~~~~~~~~~~~~ 219 (584)
.++...+...+...+++.++++||||++ ...+.+.+...+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p 200 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNP 200 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCC
Confidence 3333333333334556889999999995 445555544433
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.80 E-value=1e-19 Score=175.51 Aligned_cols=182 Identities=15% Similarity=0.062 Sum_probs=119.3
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcC--ccCCCeEEEEeC
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQ 102 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~--~~~~~~~I~v~~ 102 (584)
...+|.++++++.....+.+.... ..+.+|.+++..+.+++++++++|||||||......++... ...+.++++++|
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFE-RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCC-SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 345699999999888878654332 35778888888999999999999999999954333333222 123467899999
Q ss_pred chHHHHHHHHHHHHHHh----CCcceeEEeeEeeccCcCCCCCceEEEechHHHHHHHccCCC-CCCCcEEEEeCCCcCc
Q 007931 103 PRRLAVQAVASRVAEEM----GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (584)
Q Consensus 103 ~r~la~~~~~~~~~~~~----~~~vg~~vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~ 177 (584)
+++|+.|. .+.+.+.. +..++...|.....+........+|+|+||+.+.+.+..+.. +.++++||+|||| +.
T Consensus 101 t~~L~~q~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~ 178 (230)
T 2oxc_A 101 TREIAVQI-HSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD-KL 178 (230)
T ss_dssp SHHHHHHH-HHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH-HH
T ss_pred CHHHHHHH-HHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch-Hh
Confidence 99998763 33333322 445554444221111111112589999999999998876554 7889999999999 33
Q ss_pred cchh-HHHHHHHHHHHhcCCceEEEEecccChH
Q 007931 178 ISTD-ILLGLLKKIQRCRSDLRLIISSATIEAK 209 (584)
Q Consensus 178 ~~~d-~l~~~l~~~~~~~~~~~vi~~SAT~~~~ 209 (584)
.+.+ +...+...+...+.+.+++++|||++.+
T Consensus 179 ~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~ 211 (230)
T 2oxc_A 179 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEF 211 (230)
T ss_dssp HSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHH
T ss_pred hcCcchHHHHHHHHHhCCCCCeEEEEEeccCHH
Confidence 3322 3222222233345688999999999543
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.80 E-value=6.5e-20 Score=171.11 Aligned_cols=107 Identities=22% Similarity=0.408 Sum_probs=99.3
Q ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccccCCeE
Q 007931 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIV 355 (584)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gidip~v~ 355 (584)
++++||||+++..++.+++.|... ++.+..+||++++++|.++++.|++|..+|||||+++++|+|+|+++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~ 124 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQ 124 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCC
Confidence 568999999999999999999876 78899999999999999999999999999999999999999999999
Q ss_pred EEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChH
Q 007931 356 YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (584)
Q Consensus 356 ~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (584)
+||+++. |.+..+|.||+||+||. ++|.|+.++++.
T Consensus 125 ~VI~~d~------------------p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 125 HVINYDM------------------PEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp EEEESSC------------------CSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred EEEEeCC------------------CCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9999887 88999999999999999 789999999864
No 83
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.79 E-value=4.6e-19 Score=173.52 Aligned_cols=190 Identities=16% Similarity=0.119 Sum_probs=121.2
Q ss_pred cccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHH--hcC-------ccC
Q 007931 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLK--EAG-------WAD 93 (584)
Q Consensus 25 ~~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~--~ip~~l~--~~~-------~~~ 93 (584)
+..+|.++++++.....+.+.... ..+.+|.+++..+.+++++++++|||||||. ++|.+.. ... ...
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQ-RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCC-SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 456799999999888777554333 3567788888888889999999999999994 4443322 111 112
Q ss_pred CCeEEEEeCchHHHHHHHH--HHHHHHhCCcceeEEeeEeeccC-cCCCCCceEEEechHHHHHHHccCCC-CCCCcEEE
Q 007931 94 GGRVIACTQPRRLAVQAVA--SRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIM 169 (584)
Q Consensus 94 ~~~~I~v~~~r~la~~~~~--~~~~~~~~~~vg~~vg~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~-l~~~~~iI 169 (584)
+.++|+++|+++|+.|... +.+....+..+....|....... .......+|+|+||++|.+.+..... +.++++||
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 3578999999999887433 22333334444444442211110 11112579999999999998876654 88999999
Q ss_pred EeCCCcCccchhHHHHHHHHHHH--hcC--CceEEEEecccCh--HHHHHHhh
Q 007931 170 VDEAHERSISTDILLGLLKKIQR--CRS--DLRLIISSATIEA--KSMSAFFH 216 (584)
Q Consensus 170 iDE~Her~~~~d~l~~~l~~~~~--~~~--~~~vi~~SAT~~~--~~~~~~~~ 216 (584)
+||||. ..+.++...+...+.. ... +.++++||||++. ..+.+.+.
T Consensus 180 iDEah~-~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l 231 (253)
T 1wrb_A 180 LDEADR-MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL 231 (253)
T ss_dssp EETHHH-HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC
T ss_pred EeCHHH-HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc
Confidence 999993 3332232222222221 222 6789999999943 44544443
No 84
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=178.09 Aligned_cols=189 Identities=19% Similarity=0.176 Sum_probs=119.8
Q ss_pred cccccCCCC--CCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHH--hc--CccCCCe
Q 007931 25 LSSSLSSAS--SIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EA--GWADGGR 96 (584)
Q Consensus 25 ~~~~~~~l~--~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~--~~--~~~~~~~ 96 (584)
...+|.+++ ++......+.+.... ..+.+|.+++..+..+++++++|||||||| +++|.+-. .. ....+.+
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 128 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFT-NMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTG 128 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCC-BCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred ccCChhHhccccCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCce
Confidence 334566666 777777777654333 356777778888888899999999999999 44554321 11 1123566
Q ss_pred EEEEeCchHHHHHHHHH--HHHHHhCCcceeEEeeEeeccCcC-CCCCceEEEechHHHHHHHccCC--CCCCCcEEEEe
Q 007931 97 VIACTQPRRLAVQAVAS--RVAEEMGVKVGEEVGYTIRFEDFT-NKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVD 171 (584)
Q Consensus 97 ~I~v~~~r~la~~~~~~--~~~~~~~~~vg~~vg~~~~~~~~~-~~~~~~I~~~T~~~ll~~l~~~~--~l~~~~~iIiD 171 (584)
+|+++|+++|+.|.... .+....+..++..+|......... .....+|+|+||+++...+.... .+.++++||||
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 89999999998874322 222333445555555322211110 01147899999999999887654 48899999999
Q ss_pred CCCcCccchhHHHHHHHHHHHhcCCceEEEEecccC--hHHHHHHh
Q 007931 172 EAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFF 215 (584)
Q Consensus 172 E~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~--~~~~~~~~ 215 (584)
||| +..+.++...+.+.+....++.|+++||||++ ...+.+.+
T Consensus 209 Eah-~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~ 253 (262)
T 3ly5_A 209 EAD-RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARIS 253 (262)
T ss_dssp SHH-HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHH
T ss_pred ChH-HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHH
Confidence 999 44444444444444445667889999999994 44555433
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.66 E-value=8.5e-21 Score=174.02 Aligned_cols=118 Identities=17% Similarity=0.311 Sum_probs=105.9
Q ss_pred HHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCcc
Q 007931 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAET 347 (584)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~ 347 (584)
..+.....++++||||+++.+++.+++.|.+. ++.+..+||++++.+|.++++.|++|..+|||||+++++
T Consensus 22 ~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 92 (170)
T 2yjt_D 22 VHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92 (170)
Confidence 33334445678999999999999999999765 788999999999999999999999999999999999999
Q ss_pred ccccCCeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC-CCcEEEEccChHHHh
Q 007931 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (584)
Q Consensus 348 Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (584)
|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++.+..
T Consensus 93 Gid~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 93 GIDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 999999999999887 88999999999999999 689999999876543
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.78 E-value=7.9e-19 Score=170.93 Aligned_cols=187 Identities=18% Similarity=0.148 Sum_probs=120.8
Q ss_pred cccCCC----CCCccchhhHHHHhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHH--HHHHHHHhc-CccCCCeEEE
Q 007931 27 SSLSSA----SSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEA-GWADGGRVIA 99 (584)
Q Consensus 27 ~~~~~l----~~~~~~~~~l~~~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~--~ip~~l~~~-~~~~~~~~I~ 99 (584)
.+|.++ ++++.....+.+.... ..+.+|.+++..+.+++++++++|||||||. ++|.+..-. ....+.++++
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~li 103 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQ-MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALI 103 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCC-SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEE
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEE
Confidence 457766 7888887777664333 3567777888888889999999999999994 455433222 1123456899
Q ss_pred EeCchHHHHHHHHHHHHH---HhCCcceeEEeeEee---ccCcCCCCCceEEEechHHHHHHHccCC---CCCCCcEEEE
Q 007931 100 CTQPRRLAVQAVASRVAE---EMGVKVGEEVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMV 170 (584)
Q Consensus 100 v~~~r~la~~~~~~~~~~---~~~~~vg~~vg~~~~---~~~~~~~~~~~I~~~T~~~ll~~l~~~~---~l~~~~~iIi 170 (584)
++|+++|+.|.. +.+.+ ..+..+....|.... ....... ..+|+|+||+++...+.... .+.++++||+
T Consensus 104 l~Pt~~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 104 ISPTRELASQIH-RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSK-KFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp ECSSHHHHHHHH-HHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCC-CCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EeCCHHHHHHHH-HHHHHHhcccCceEEEEecCccHHHHhhhhhcC-CCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 999999988643 33332 224444333332111 1112223 68999999999999987663 3889999999
Q ss_pred eCCCcCccc--hhHHHHHHHHHHHh-cCCceEEEEecccC--hHHHHHHhh
Q 007931 171 DEAHERSIS--TDILLGLLKKIQRC-RSDLRLIISSATIE--AKSMSAFFH 216 (584)
Q Consensus 171 DE~Her~~~--~d~l~~~l~~~~~~-~~~~~vi~~SAT~~--~~~~~~~~~ 216 (584)
||||...-. .++...+...+... .++.++++||||++ ...+.+.+.
T Consensus 182 DEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l 232 (245)
T 3dkp_A 182 DESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNL 232 (245)
T ss_dssp SSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHS
T ss_pred eChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhC
Confidence 999942211 34555554444432 45789999999994 344444443
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=156.42 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=102.8
Q ss_pred HhcCCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc-----cCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 007931 45 QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-----ADGGRVIACTQPRRLAVQAVASRVAEEM 119 (584)
Q Consensus 45 ~~~~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~-----~~~~~~I~v~~~r~la~~~~~~~~~~~~ 119 (584)
.....+.+.+|.+++..+.+++++++.+|||+|||+.+...+..... ..++++++++|++.++.|.+.+.+.+..
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999665544433211 1246789999999998875666555544
Q ss_pred C--CcceeEEeeEeeccCc-CCCCCceEEEechHHHHHHHccC-------CCCCCCcEEEEeCCCcCccchhHHHHHHHH
Q 007931 120 G--VKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDD-------PLLTKYSVIMVDEAHERSISTDILLGLLKK 189 (584)
Q Consensus 120 ~--~~vg~~vg~~~~~~~~-~~~~~~~I~~~T~~~ll~~l~~~-------~~l~~~~~iIiDE~Her~~~~d~l~~~l~~ 189 (584)
. ..++...|........ ......+|+|+||+.+.+.+... ..+.++++||+||||. .....+...++..
T Consensus 108 ~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~-~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRH 186 (216)
T ss_dssp TTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHH
T ss_pred ccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchh-hccCCcHHHHHHH
Confidence 3 3444433322111100 00014789999999999888664 3378899999999994 3333333444333
Q ss_pred HHHhc--------------CCceEEEEecc
Q 007931 190 IQRCR--------------SDLRLIISSAT 205 (584)
Q Consensus 190 ~~~~~--------------~~~~vi~~SAT 205 (584)
+.... ++.++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 67899999998
No 88
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.69 E-value=1.9e-15 Score=165.05 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCCChHH--HHHHHHHHhcCccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCcceeEE
Q 007931 52 YKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEV 127 (584)
Q Consensus 52 ~~~~~~il~~l~~~~~viv~a~TGsGKT--~~ip~~l~~~~~~~~~~~I~v~~~r~la~~--~~~~~~~~~~~~~vg~~v 127 (584)
+..|...+..+.+++ |..+.||+||| +.+|.++... .+.++++++|++.||.+ .....+.+.+|..++..+
T Consensus 81 t~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~ 155 (997)
T 2ipc_A 81 FDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQ 155 (997)
T ss_dssp CHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECC
T ss_pred cHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 445555555566666 89999999999 5566554322 34468999999999988 556678888899888777
Q ss_pred eeEeeccCcCCCCCceEEEechHHH-HHHHccCC-------CCC---CCcEEEEeCCC
Q 007931 128 GYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDP-------LLT---KYSVIMVDEAH 174 (584)
Q Consensus 128 g~~~~~~~~~~~~~~~I~~~T~~~l-l~~l~~~~-------~l~---~~~~iIiDE~H 174 (584)
|.....+..... .++|+|+||+.| ++++..+. .++ ++.++||||+|
T Consensus 156 Gg~~~~~r~~ay-~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 156 HASTPAERRKAY-LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp TTCCHHHHHHHH-TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred CCCCHHHHHHHc-CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 743322222222 589999999999 77775542 367 89999999999
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.64 E-value=6.6e-16 Score=167.30 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEE
Q 007931 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (584)
Q Consensus 261 ~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlv 340 (584)
+.....+..+... .+|.+|||+||...++.+++.+.+ ..+ ..++.. .++.++++.|++|. .|++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-----------~~~-~~q~~~--~~~~~~l~~f~~~~-~il~ 433 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-----------IPV-IEENKK--TRHEEVLELMKTGK-YLVM 433 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-----------SCE-EESTTT--CCHHHHHHHHHTSC-CEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-----------Cce-EecCCC--CcHHHHHHHHhcCC-eEEE
Confidence 4445555555444 567899999999999998876632 222 345543 35667777776654 5666
Q ss_pred --eCCCCccccccCC----eEEEEecCCccceeecCC-------------CCcccceeeeccHHhHHHhccccCCC--CC
Q 007931 341 --STNIAETSLTLEG----IVYVVDSGFSKQRFYNPI-------------SDIENLVVAPISKASARQRAGRAGRV--RP 399 (584)
Q Consensus 341 --aT~i~e~Gidip~----v~~VId~g~~k~~~~d~~-------------~~~~~l~~~~~s~~~~~QR~GRaGR~--~~ 399 (584)
+|..+.+|||+|+ +++||..|+......||. .+...+. .+.......|-+||+-|. ..
T Consensus 434 ~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~ 512 (540)
T 2vl7_A 434 LVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDY 512 (540)
T ss_dssp EEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCC
T ss_pred EEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCcc
Confidence 8999999999997 899999998643332221 1111111 122367788999999998 45
Q ss_pred cEEEEc
Q 007931 400 GKCYRL 405 (584)
Q Consensus 400 G~~~~l 405 (584)
|..+.+
T Consensus 513 g~v~ll 518 (540)
T 2vl7_A 513 VKIYLC 518 (540)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 655443
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.55 E-value=7.2e-15 Score=146.02 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=93.5
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEe
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg 128 (584)
+..+.+|.+.+..+..++..++++|||+|||.++..++........+++++++|++.|+.| +.+.+.+..........+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQ-MADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHH-HHHHHHHHTSCCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHHHhcccccceEEE
Confidence 5678888888887777777899999999999665444433222234578999999888875 444444443221111111
Q ss_pred eEeeccC-cCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHH-HhcCCceEEEEeccc
Q 007931 129 YTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ-RCRSDLRLIISSATI 206 (584)
Q Consensus 129 ~~~~~~~-~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~-~~~~~~~vi~~SAT~ 206 (584)
....... .......+|+++|++.+.+.. ...+.++++||+||||. ... . .+..+. ......+++++|||+
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~-~~~-~----~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHL-ATG-K----SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGG-CCH-H----HHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCcc-CCc-c----cHHHHHHHhhcCCeEEEEeCCC
Confidence 1111010 011136899999999876431 12367899999999994 332 2 222222 234578999999999
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.47 E-value=3.5e-13 Score=129.98 Aligned_cols=137 Identities=22% Similarity=0.203 Sum_probs=96.2
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCc-ceeEE
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK-VGEEV 127 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~-vg~~v 127 (584)
...+.+|.+.+..+.+++.+++++|||+|||.++..++... +.++++++|++.++.+ +.+.+.+ ++.. ++...
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q-~~~~~~~-~~~~~v~~~~ 165 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQ-WKERLGI-FGEEYVGEFS 165 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHH-HHHHHGG-GCGGGEEEES
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHH-HHHHHHh-CCCCeEEEEe
Confidence 45678999999988888889999999999997766555543 4578899999888765 4444444 5655 44433
Q ss_pred eeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccC
Q 007931 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (584)
Q Consensus 128 g~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~ 207 (584)
|.. .. ..+|+++|++.+.+.... ...++++|||||+|.. .... .+.+....+..+++++|||+.
T Consensus 166 g~~-------~~-~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l-~~~~-----~~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 166 GRI-------KE-LKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHL-PAES-----YVQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp SSC-------BC-CCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCC-CTTT-----HHHHHHTCCCSEEEEEEESCC
T ss_pred CCC-------CC-cCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccC-CChH-----HHHHHHhccCCEEEEEecCCC
Confidence 321 12 578999999998765432 2356899999999943 2222 223444445778999999993
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.47 E-value=1.6e-12 Score=141.30 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcE
Q 007931 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (584)
Q Consensus 258 ~~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~ 337 (584)
++.+.....+..+... .+|.+|||+|+....+.+++. .+..+..=..+++.++..+.++ .++ .-
T Consensus 376 ~~~~~l~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~ 439 (551)
T 3crv_A 376 NMWKRYADYLLKIYFQ-AKANVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KV 439 (551)
T ss_dssp HHHHHHHHHHHHHHHH-CSSEEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SC
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-Ce
Confidence 4456666666666544 467899999999999888752 1344444444566666655554 223 37
Q ss_pred EEEeC--CCCccccccC-----CeEEEEecCCccceeecCC-----------CCcccc---eeeeccHHhHHHhccccCC
Q 007931 338 VVIST--NIAETSLTLE-----GIVYVVDSGFSKQRFYNPI-----------SDIENL---VVAPISKASARQRAGRAGR 396 (584)
Q Consensus 338 vlvaT--~i~e~Gidip-----~v~~VId~g~~k~~~~d~~-----------~~~~~l---~~~~~s~~~~~QR~GRaGR 396 (584)
|++|| .....|||+| ..+.||-.|+.-... ||. .|-..+ ...| ......|-+||+=|
T Consensus 440 vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR 517 (551)
T 3crv_A 440 LIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIR 517 (551)
T ss_dssp EEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCC
T ss_pred EEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCcc
Confidence 99998 6888999999 377888878755433 332 121111 2224 67778899999999
Q ss_pred CC--CcEEEE
Q 007931 397 VR--PGKCYR 404 (584)
Q Consensus 397 ~~--~G~~~~ 404 (584)
.. .|..+.
T Consensus 518 ~~~D~G~v~l 527 (551)
T 3crv_A 518 DVNDKCNVWL 527 (551)
T ss_dssp STTCEEEEEE
T ss_pred CCCccEEEEE
Confidence 83 354443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.40 E-value=1.3e-13 Score=135.46 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=87.5
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCC-CcE-EEEeCCCCccccccC
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTLE 352 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-~~~-vlvaT~i~e~Gidip 352 (584)
.+.++|||+.....++.+.+.|.+.. ++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 46789999999999999999998753 56788899999999999999999988 666 789999999999999
Q ss_pred CeEEEEecCCccceeecCCCCcccceeeeccHHhHHHhccccCCC---CCcEEEEccChHHHhh
Q 007931 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (584)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (584)
++++||.++. |.+++.+.||+||++|. ++-.+|+++++...+.
T Consensus 183 ~a~~VI~~d~------------------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 183 SANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp TCSEEEECSC------------------CSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred cCCEEEEECC------------------CCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 9999999777 77788888999999998 3446789988765544
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.10 E-value=9.9e-10 Score=120.34 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEE
Q 007931 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (584)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~v 338 (584)
+.......+..+... .+|.+|||+||....+.+++.+. . .+.. ...+++..++..+++.|+ +.-.|
T Consensus 432 ~~~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~-~--------~~~~---~~q~~~~~~~~~ll~~f~-~~~~v 497 (620)
T 4a15_A 432 ELDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVS-F--------EHMK---EYRGIDQKELYSMLKKFR-RDHGT 497 (620)
T ss_dssp HHHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCC-S--------CCEE---CCTTCCSHHHHHHHHHHT-TSCCE
T ss_pred HHHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHH-h--------cchh---ccCCCChhHHHHHHHHhc-cCCcE
Confidence 344555555555544 35679999999999998887764 1 1222 445566667888888888 78889
Q ss_pred EEeCC--CCccccccCC--eEEEEecCCccceeecCC-------------CCcccceeeeccHHhHHHhccccCCC--CC
Q 007931 339 VISTN--IAETSLTLEG--IVYVVDSGFSKQRFYNPI-------------SDIENLVVAPISKASARQRAGRAGRV--RP 399 (584)
Q Consensus 339 lvaT~--i~e~Gidip~--v~~VId~g~~k~~~~d~~-------------~~~~~l~~~~~s~~~~~QR~GRaGR~--~~ 399 (584)
+++|. ...+|||+|+ .+.||-.|+.-..- ||. .++..-...| ......|-+||+=|. ..
T Consensus 498 L~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~ 575 (620)
T 4a15_A 498 IFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDT 575 (620)
T ss_dssp EEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCC
T ss_pred EEEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCce
Confidence 99974 8999999985 56777777753221 211 1111001113 456678999999998 44
Q ss_pred cEEEEc
Q 007931 400 GKCYRL 405 (584)
Q Consensus 400 G~~~~l 405 (584)
|..+.+
T Consensus 576 G~v~ll 581 (620)
T 4a15_A 576 GACVIL 581 (620)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 655443
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.14 E-value=1e-05 Score=88.48 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc---CccCCCeEEEEeCchHHHHHHHHHHH---HHHhCCcceeE
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA---GWADGGRVIACTQPRRLAVQAVASRV---AEEMGVKVGEE 126 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~---~~~~~~~~I~v~~~r~la~~~~~~~~---~~~~~~~vg~~ 126 (584)
..|.+.+..+..+++++++|++||||||.+-.++... ....+.++++++|+.+.+.+ +.+.+ ...++......
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~-L~e~~~~~~~~l~l~~~~~ 230 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR-LTESLGKALRQLPLTDEQK 230 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHH-HHHHHTHHHHHSSCCSCCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHH-HHHHHHHHHhcCCCCHHHH
Confidence 3455566666678999999999999997765433211 11233467788888776653 33322 22232211000
Q ss_pred EeeEeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
..+..+.. + -.+++-.+++... .........++++|||||++ .++.+.+..+++ ....+.|+|++.-.
T Consensus 231 --~~~~~~~~-T--ih~ll~~~~~~~~-~~~~~~~~l~~d~lIIDEAs--ml~~~~~~~Ll~---~l~~~~~liLvGD~ 298 (608)
T 1w36_D 231 --KRIPEDAS-T--LHRLLGAQPGSQR-LRHHAGNPLHLDVLVVDEAS--MIDLPMMSRLID---ALPDHARVIFLGDR 298 (608)
T ss_dssp --CSCSCCCB-T--TTSCC------------CTTSCCSCSEEEECSGG--GCBHHHHHHHHH---TCCTTCEEEEEECT
T ss_pred --hccchhhh-h--hHhhhccCCCchH-HHhccCCCCCCCEEEEechh--hCCHHHHHHHHH---hCCCCCEEEEEcch
Confidence 00000000 0 0112222232211 00111112378999999999 455444444443 24567788887654
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.81 E-value=5.5e-05 Score=81.82 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=43.4
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHH
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la 107 (584)
...+...|.+++..+.++++++|.|+.||||||.+-.++... ...+.++++++|+.+.+
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l-~~~g~~Vl~~ApT~~Aa 245 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA-ESLGLEVGLCAPTGKAA 245 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEecCcHHHH
Confidence 344567888888888889999999999999998776554322 22456677788776544
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.75 E-value=9.1e-05 Score=78.18 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=35.4
Q ss_pred hHHHHHHHHHH----hcC-CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHH
Q 007931 52 YKYRTAILYLV----ETH-ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS 113 (584)
Q Consensus 52 ~~~~~~il~~l----~~~-~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~ 113 (584)
...|++++..+ .++ +.++|.|+.|||||+++-.++..........+++++|+... +..+.+
T Consensus 27 n~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~A-a~~l~~ 92 (459)
T 3upu_A 27 TEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAA-KKILSK 92 (459)
T ss_dssp CHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHH-HHHHHh
Confidence 33444444433 333 49999999999999877655433221122356777777543 333443
No 98
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.63 E-value=0.00028 Score=66.28 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=64.7
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCc
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~ 142 (584)
..+..+++.|++|+||||.+-+.+..... .+.+++++.+...- + . ...+....|. . ..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~-~g~kVli~~~~~d~-------r-~---~~~i~srlG~--------~--~~ 67 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY-ADVKYLVFKPKIDT-------R-S---IRNIQSRTGT--------S--LP 67 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCCG-------G-G---CSSCCCCCCC--------S--SC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEEeccCc-------h-H---HHHHHHhcCC--------C--cc
Confidence 34678999999999999998888776532 34456666554311 0 0 0011111110 0 11
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEec
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SA 204 (584)
.+.+.+...+...+.....-.++++|||||++- +..+ ....++.+... +..+|+..-
T Consensus 68 ~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 68 SVEVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp CEEESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECC
T ss_pred ccccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEec
Confidence 233455666776665543345689999999993 3333 33444554443 666666543
No 99
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.62 E-value=0.00034 Score=72.41 Aligned_cols=133 Identities=23% Similarity=0.245 Sum_probs=76.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
.+++++|++|+||||.+..+...... .+.++ ++.+.+.+.++.......+...+..+.. ....
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~----------~~~~----- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG----------EPNN----- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC----------CTTC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCccchhHHHHHHHHHHhcCCceee----------cccc-----
Confidence 57899999999999888766544332 33344 5566677777665555555555543210 0000
Q ss_pred EEechHHHHHHHccCCCCCCCcEEEEeCCCcCc--cchhHHHHHHHHHHHhcCCceEEEEeccc--ChHHHHHHhh
Q 007931 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS--ISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFH 216 (584)
Q Consensus 145 ~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~--~~~d~l~~~l~~~~~~~~~~~vi~~SAT~--~~~~~~~~~~ 216 (584)
..|..+...........++++||||++-... .+..+...+.+......++.-+++++|+. +....++.|.
T Consensus 162 --~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 162 --QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp --SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 1233333222222223578999999998323 34444444444333456677788899987 4444555555
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.45 E-value=0.001 Score=60.26 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.++.+++.||+|+||||++-.+...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999888765543
No 101
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.34 E-value=0.0012 Score=68.22 Aligned_cols=132 Identities=20% Similarity=0.242 Sum_probs=73.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCe-EEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGR-VIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~-~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
.+++++|++|+||||.+..+...... .+.+ .++.+.+.+.++....+..+...+..+.. ....
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~---------~~~~------ 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG---------NPQE------ 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC---------CTTC------
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe---------cCCC------
Confidence 58899999999999888766544322 2333 45556677777665555555555543210 0000
Q ss_pred EEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEeccc--ChHHHHHHhh
Q 007931 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI--EAKSMSAFFH 216 (584)
Q Consensus 145 ~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~--~~~~~~~~~~ 216 (584)
..|..+.+.......-.++++||||.+- |....+.+..-++.+.. ..++.-+++++||. +....++.|.
T Consensus 165 --~dp~~i~~~al~~a~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 165 --KDAIKLAKEGVDYFKSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 1232222211111012358999999997 44333334443444333 45677788899987 3333444554
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.28 E-value=0.00073 Score=61.61 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=28.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.+...++.||.|+||||.+-+.+.... ..+.+++++.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeec
Confidence 367899999999999999877766542 234456666555
No 103
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0021 Score=63.65 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=63.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCc--cC----CCeEEEEeCchHHHHHHHHHHHHHHh-CCcceeEEeeEeeccCc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGW--AD----GGRVIACTQPRRLAVQAVASRVAEEM-GVKVGEEVGYTIRFEDF 136 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~--~~----~~~~I~v~~~r~la~~~~~~~~~~~~-~~~vg~~vg~~~~~~~~ 136 (584)
...+++|.||+|+|||+++-..+.+... .. .-..+.+--..-.....+...+.+.+ |...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~------------- 110 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL------------- 110 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC-------------
Confidence 4568999999999999777655443211 11 11234443222112223333344433 2110
Q ss_pred CCCCCceEEEechHHHHHHHccCC-CCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccC
Q 007931 137 TNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (584)
Q Consensus 137 ~~~~~~~I~~~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~ 207 (584)
... . +...|.+.+.... .-...-+|++||+|... ..+.+..+++.......++-+|+.++|++
T Consensus 111 ~~~-~------~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 111 CGD-I------SLEALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp -CC-C------CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred Cch-H------HHHHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 000 0 1223333322211 12345799999999544 77777777764333344567788899984
No 104
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.16 E-value=0.0018 Score=59.27 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=28.4
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.+...++.||.||||||.+-..+.... ..+.+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEec
Confidence 456899999999999988887776653 344556666544
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.15 E-value=0.0089 Score=60.80 Aligned_cols=153 Identities=13% Similarity=0.181 Sum_probs=82.7
Q ss_pred CCCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc-CccCCCeEEEEeCchHHHHHHHHHHHH---HHhCCcc
Q 007931 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVA---EEMGVKV 123 (584)
Q Consensus 48 ~lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~-~~~~~~~~I~v~~~r~la~~~~~~~~~---~~~~~~v 123 (584)
.+.+..+|..++..+...+.+++..+-+.|||+.+..+++.. ....+..++++.+.+..|.. +..++. +......
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~-vf~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE-VLDRTKQAIELLPDFL 239 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHH-HHHHHHHHHHHSCTTT
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHH-HHHHHHHHHHhChHhh
Confidence 356789999999988777889999999999997766554432 22344566777777766643 334333 2222111
Q ss_pred ee-EE---eeEeeccCcCCCCCceEEEec--hHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCc
Q 007931 124 GE-EV---GYTIRFEDFTNKDLTAIKFLT--DGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL 197 (584)
Q Consensus 124 g~-~v---g~~~~~~~~~~~~~~~I~~~T--~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~ 197 (584)
.. .. ...+.+. . ...|.+.+ ++.+ .+ .+.+++|+||+|.-.-..+.+.. +......+.+.
T Consensus 240 ~~~~~~~~~~~I~f~----n-Gs~i~~lsa~~~sl----rG----~~~~~viiDE~a~~~~~~el~~a-l~~~ls~~~~~ 305 (385)
T 2o0j_A 240 QPGIVEWNKGSIELD----N-GSSIGAYASSPDAV----RG----NSFAMIYIEDCAFIPNFHDSWLA-IQPVISSGRRS 305 (385)
T ss_dssp SCCEEEECSSEEEET----T-SCEEEEEECSHHHH----HT----SCCSEEEEESGGGSTTHHHHHHH-HHHHHHSTTCC
T ss_pred hhhhccCCccEEEeC----C-CCEEEEEECCCCCc----cC----CCCCEEEechhhhcCCCHHHHHH-HHHHhhcCCCC
Confidence 11 11 1112221 1 34454444 3322 11 24689999999943211233333 33333333445
Q ss_pred eEEEEe-cccChHHHHHHhh
Q 007931 198 RLIISS-ATIEAKSMSAFFH 216 (584)
Q Consensus 198 ~vi~~S-AT~~~~~~~~~~~ 216 (584)
++++.| ++.. ..+.+.+.
T Consensus 306 kiiiiSTP~g~-n~fy~l~~ 324 (385)
T 2o0j_A 306 KIIITTTPNGL-NHFYDIWT 324 (385)
T ss_dssp EEEEEECCCSS-SHHHHHHH
T ss_pred cEEEEeCCCCc-hhHHHHHH
Confidence 555544 4434 35555443
No 106
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.15 E-value=0.0029 Score=55.09 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHH
Q 007931 55 RTAILYLVETHATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 55 ~~~il~~l~~~~~viv~a~TGsGKT~~ip~~ 85 (584)
++.+-.+...+..+++.||+|+|||+++-.+
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHHHHH
Confidence 3344444566778999999999999666544
No 107
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.12 E-value=0.008 Score=66.10 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHH---HhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 007931 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYL---KEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (584)
Q Consensus 51 ~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l---~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~ 120 (584)
+...|.+++. ..+..++|.|+.|||||+.+-..+ ......+..+++++++++..+ ..+.+++.+..+
T Consensus 10 Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa-~e~~~rl~~~~~ 79 (647)
T 3lfu_A 10 LNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAA-AEMRHRIGQLMG 79 (647)
T ss_dssp CCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHH-HHHHHHHHHHHC
T ss_pred CCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHH-HHHHHHHHHHhc
Confidence 4566766665 335679999999999996654332 222111234678888776554 467777776654
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.09 E-value=0.0045 Score=58.27 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=24.1
Q ss_pred HHHHHHHhcCC---EEEEEcCCCChHHHHHHHHHHh
Q 007931 56 TAILYLVETHA---TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 56 ~~il~~l~~~~---~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+.+...+..++ .++|.||+|+|||+++-.+...
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555554 7999999999999887666543
No 109
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.07 E-value=0.0056 Score=56.76 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=22.5
Q ss_pred HHHHHHHhcC--CEEEEEcCCCChHHHHHHHHHH
Q 007931 56 TAILYLVETH--ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 56 ~~il~~l~~~--~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+.+...+..+ ..+++.||+|+|||+++-.+..
T Consensus 27 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 27 QRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444555444 3599999999999987765543
No 110
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.02 E-value=0.0058 Score=60.32 Aligned_cols=123 Identities=24% Similarity=0.268 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCce
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~ 143 (584)
++++.++|++|+||||.+-.+...... .++++ ++-..+++.++....+...+..+..+. . .....+...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~---~------~~s~~~~~~ 173 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATVI---S------HSEGADPAA 173 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE---C------CSTTCCHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHHHHHHHcCCcEE---e------cCCccCHHH
Confidence 457899999999999888766544322 34444 334455555544333333444443320 0 001110011
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHh-------cCCceEEEEeccc
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC-------RSDLRLIISSATI 206 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~-------~~~~~vi~~SAT~ 206 (584)
+. .+.+.+.+ ..++++||+||+- +....+.+...++.+... .++--++.+.|+.
T Consensus 174 v~---~~al~~a~-----~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 174 VA---FDAVAHAL-----ARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp HH---HHHHHHHH-----HTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred HH---HHHHHHHH-----hcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 10 11122222 3468999999997 544444444445444332 2444466778875
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.00 E-value=0.00045 Score=60.64 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.++.+++.||+|+|||+++-.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999887665543
No 112
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.98 E-value=0.0031 Score=64.49 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=58.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEEE
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKF 146 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~~ 146 (584)
.++|.||+|+|||+++-.+........+...+++..........+...+...++.... . ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~--------------~--~~--- 106 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP--------------R--RG--- 106 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC--------------S--SC---
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC--------------C--CC---
Confidence 8999999999999888766544321113345555422222222334444444432110 0 00
Q ss_pred echHHHHH----HHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhc----CCceEEEEeccc
Q 007931 147 LTDGVLLR----EMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR----SDLRLIISSATI 206 (584)
Q Consensus 147 ~T~~~ll~----~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~----~~~~vi~~SAT~ 206 (584)
.+.+.+.+ .+.. ..+..+|||||+|.- +.+.+..+++.+.... .++.+|+.|...
T Consensus 107 ~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l--~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 107 LSRDEFLALLVEHLRE---RDLYMFLVLDDAFNL--APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp CCHHHHHHHHHHHHHH---TTCCEEEEEETGGGS--CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCHHHHHHHHHHHHhh---cCCeEEEEEECcccc--chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 01222222 2221 234579999999943 4455555444432222 466677666554
No 113
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.84 E-value=0.0014 Score=66.26 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=22.3
Q ss_pred HHHHHHhcC--CEEEEEcCCCChHHHHHHHHHH
Q 007931 57 AILYLVETH--ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 57 ~il~~l~~~--~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+...+..+ ..+++.||+|+|||+++-.+..
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 344555555 5599999999999977765543
No 114
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.84 E-value=0.0048 Score=62.68 Aligned_cols=52 Identities=21% Similarity=0.415 Sum_probs=31.5
Q ss_pred HHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 150 ~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
..+...+...+...+..+|||||+|. +..+....+++.+.....+..+|+.+
T Consensus 105 ~~l~~~~~~~~~~~~~~vliiDe~~~--l~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 105 RDLLDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp HHHHHHTTSCCSSSSSEEEEEECGGG--SCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred HHHHHHHhhccccCCeEEEEEECcch--hcHHHHHHHHHHHhcCCCceEEEEEe
Confidence 44555555555566789999999994 34445555555554444455555544
No 115
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.83 E-value=0.014 Score=63.46 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=48.8
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCc-cCCCeEEEEeCchHHHHHHHHHHHHHH
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEE 118 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~-~~~~~~I~v~~~r~la~~~~~~~~~~~ 118 (584)
+.+..+|..++..+...+.+++.++-|+|||+.+..+++.... .++..++++.+.+..+.. +...+...
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~-~~~~i~~~ 231 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE-VLDRTKQA 231 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHH-HHHHHHHH
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHH-HHHHHHHH
Confidence 4578999999998877788999999999999776654443322 233467788888776655 44444443
No 116
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.78 E-value=0.0068 Score=60.78 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=33.2
Q ss_pred HHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
.+.+.+...+...+..++||||+|. +..+....+++.+..-.++..+|+.|-.
T Consensus 95 ~l~~~~~~~~~~~~~kvviIdead~--l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 95 EVTEKLNEHARLGGAKVVWVTDAAL--LTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp HHHHHTTSCCTTSSCEEEEESCGGG--BCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred HHHHHHhhccccCCcEEEEECchhh--cCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 4555555555567899999999993 4445555666665444445556665543
No 117
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.75 E-value=0.0057 Score=60.15 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=66.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v-~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~ 142 (584)
.++++.++|++|+||||.+-.+........+.++.++ .-+.+.++.......++..+..+.. .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~------------~---- 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEV------------C---- 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB------------C----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEe------------c----
Confidence 3568999999999999988766554332234344444 3344444332222233333322100 0
Q ss_pred eEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEecccChHHHHHHh
Q 007931 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAFF 215 (584)
Q Consensus 143 ~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~~~~~~~~~~ 215 (584)
..+..+...+.. +.++++||+|.+- +......+..-+..+.. ..++-.+++++||.+...+.++.
T Consensus 168 ----~~~~~l~~al~~---~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~ 233 (296)
T 2px0_A 168 ----YTKEEFQQAKEL---FSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIV 233 (296)
T ss_dssp ----SSHHHHHHHHHH---GGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHT
T ss_pred ----CCHHHHHHHHHH---hcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHH
Confidence 123333222221 3678999999776 44333222222323222 22344577888888766665543
No 118
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.75 E-value=0.0037 Score=57.83 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=28.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
.+...+++|+-||||||.+-..+.... ..+.+++++.|..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEecc
Confidence 356788999999999988887777653 3445566665543
No 119
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.72 E-value=0.0087 Score=57.73 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=25.4
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE
Q 007931 60 YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (584)
Q Consensus 60 ~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v 100 (584)
.....+..+++.||+|+|||+++-.+. ......+.+.+.+
T Consensus 24 ~~~~~~~~vll~G~~GtGKt~la~~i~-~~~~~~~~~~~~v 63 (265)
T 2bjv_A 24 HLAPLDKPVLIIGERGTGKELIASRLH-YLSSRWQGPFISL 63 (265)
T ss_dssp HHTTSCSCEEEECCTTSCHHHHHHHHH-HTSTTTTSCEEEE
T ss_pred HHhCCCCCEEEECCCCCcHHHHHHHHH-HhcCccCCCeEEE
Confidence 334556789999999999997665443 3332233445544
No 120
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.67 E-value=0.0048 Score=53.50 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHHHHHH
Q 007931 54 YRTAILYLVETHATTIIVGETGSGKTTQIP 83 (584)
Q Consensus 54 ~~~~il~~l~~~~~viv~a~TGsGKT~~ip 83 (584)
.++.+..+...+..+++.||+|+|||+++-
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHHHH
Confidence 334444445667889999999999996553
No 121
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.64 E-value=0.0034 Score=64.69 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
.++.+|.|+.|||||+.+-..+. ..+.++++|+++++. .+.+++.+. +. .. ....
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~------~~~~lVlTpT~~aa~-~l~~kl~~~-~~----------------~~-~~~~ 215 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN------FEEDLILVPGRQAAE-MIRRRANAS-GI----------------IV-ATKD 215 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC------TTTCEEEESCHHHHH-HHHHHHTTT-SC----------------CC-CCTT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc------cCCeEEEeCCHHHHH-HHHHHhhhc-Cc----------------cc-cccc
Confidence 45889999999999988765542 134588999988764 444444211 10 01 2344
Q ss_pred EEechHHHHHHHccCCC-CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 145 KFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 145 ~~~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
.+.|-+.++.. .... ....++|||||+- .++.+.+..++.. .+..++|++.-.
T Consensus 216 ~V~T~dsfL~~--~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~----~~~~~vilvGD~ 269 (446)
T 3vkw_A 216 NVRTVDSFLMN--YGKGARCQFKRLFIDEGL--MLHTGCVNFLVEM----SLCDIAYVYGDT 269 (446)
T ss_dssp TEEEHHHHHHT--TTSSCCCCCSEEEEETGG--GSCHHHHHHHHHH----TTCSEEEEEECT
T ss_pred eEEEeHHhhcC--CCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHh----CCCCEEEEecCc
Confidence 57788776532 1111 2358999999997 4555555554433 223566665544
No 122
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.63 E-value=0.0027 Score=58.49 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=23.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
+.+++.||+|+|||+++-.+.... ...+.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~-~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL-AKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEE
Confidence 789999999999998776554433 22344555543
No 123
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.63 E-value=0.0026 Score=69.97 Aligned_cols=65 Identities=28% Similarity=0.491 Sum_probs=44.6
Q ss_pred chHHH-HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHH
Q 007931 51 VYKYR-TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (584)
Q Consensus 51 ~~~~~-~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~ 117 (584)
+...| +++..++...+..+|.||+|||||+.+..++... ...+.++++|+|+ ..|+..+.+++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l-~~~~~~ILv~a~T-N~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA-VKQGLKVLCCAPS-NIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEcCc-hHHHHHHHHHHHh
Confidence 34444 4555566677899999999999997666555443 2345567777766 5667788888764
No 124
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.62 E-value=0.0039 Score=58.81 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.++.+++.||+|+|||+++-.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999887655543
No 125
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.59 E-value=0.0028 Score=64.72 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=19.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+.++|.||+|+|||+++-.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999887655543
No 126
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.43 E-value=0.0082 Score=59.86 Aligned_cols=125 Identities=21% Similarity=0.239 Sum_probs=65.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~ 142 (584)
.+.++.++||+||||||++-.+...... .++.+ +.-..+.+.++....+..++..+..+. . ... .. ..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v---~-----q~~-~~-~p 196 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVI---K-----HSY-GA-DP 196 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEE---C-----CCT-TC-CH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccchHHHHHHHHHHcCceEE---e-----ccc-cC-CH
Confidence 4568999999999999988766543322 33444 444455555554444444555443221 0 000 00 00
Q ss_pred eEEEech-HHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccC
Q 007931 143 AIKFLTD-GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (584)
Q Consensus 143 ~I~~~T~-~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~ 207 (584)
. .|. +.+.... ..+++++++|.+............+-.......++..++++.|+..
T Consensus 197 ~---~~v~e~l~~~~-----~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 197 A---AVAYDAIQHAK-----ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp H---HHHHHHHHHHH-----HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred H---HHHHHHHHHHH-----hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 0 011 1111111 1356889999987323333333333333333557778888998873
No 127
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.43 E-value=0.0055 Score=57.07 Aligned_cols=40 Identities=25% Similarity=0.115 Sum_probs=31.1
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
.+..+..++|.||+|+||||++-+++. ..+.+++++....
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL----LSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEEECCC
Confidence 466789999999999999999888776 2455677776543
No 128
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.42 E-value=0.014 Score=58.03 Aligned_cols=36 Identities=33% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
.+.+++.||+|+|||+++-.+..... ..+.+++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~-~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK-KRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 35799999999999988765544331 1234556654
No 129
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.42 E-value=0.0092 Score=58.91 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=26.9
Q ss_pred CcEEEEeCCCcC-------ccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 165 YSVIMVDEAHER-------SISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 165 ~~~iIiDE~Her-------~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
.++|+|||+|.- ....+.+..+++.+.....++.+|+.+.+.
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 469999999933 224455566666665555667666665443
No 130
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.41 E-value=0.0051 Score=56.78 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=27.4
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
..+.+.+++|+-||||||.+-..+.... ..+.+++++.|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEecc
Confidence 4578899999999999986665555443 2345566666543
No 131
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.41 E-value=0.0042 Score=61.59 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeC
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~ 102 (584)
++.+++.||+|+|||+++-.+........+.+++++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 57899999999999977765544332023445565553
No 132
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.40 E-value=0.026 Score=56.04 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=24.7
Q ss_pred CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
..+..+|||||+|.-. ..+....+++.+.....+.++|+.+
T Consensus 103 ~~~~~vliiDEi~~l~-~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 103 DGRQKVIVIDEFDRSG-LAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SSCEEEEEEESCCCGG-GHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCCeEEEEECCcccC-cHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4477899999999422 1344444444444444566666644
No 133
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.017 Score=57.05 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=33.8
Q ss_pred HHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEe
Q 007931 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (584)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~S 203 (584)
.+...+...+...+..+|||||+|. +..+....+++.+..-.++..+|+.+
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~--lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCER--MTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGG--BCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred HHHHHHhhccccCCceEEEeccHHH--hCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 4555555666677899999999993 34455666666665544555666554
No 134
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.31 E-value=0.008 Score=54.68 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=29.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.++..++.||.|||||+.+-+.+..... .+.++++++|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEccc
Confidence 3678999999999999888777766543 34667888776
No 135
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.30 E-value=0.0071 Score=59.80 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=20.4
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 60 YLVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 60 ~~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.....+..+++.||+|+|||+++-.+..
T Consensus 20 ~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 20 MVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp HHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred HHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 3334567899999999999966654433
No 136
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.29 E-value=0.041 Score=53.99 Aligned_cols=124 Identities=23% Similarity=0.225 Sum_probs=61.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCce
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v-~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~ 143 (584)
++++.++|++|+||||.+..+...... .+++++++ ..+++-++......+....+..+- .+. . .
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~--~~~-----~--~----- 162 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL--EVM-----D--G----- 162 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEE--ECC-----T--T-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHHhcccCCeEEE--EcC-----C--C-----
Confidence 457888899999999887766543322 34444433 344443333222223333443221 000 0 0
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
..|..+.+.........++++|||||.-.-+.+...+..+.+......++.-++.+.|+.
T Consensus 163 ---~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~ 222 (295)
T 1ls1_A 163 ---ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (295)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC
Confidence 123333332221111247899999999523444434444333333334555555677765
No 137
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.26 E-value=0.028 Score=56.51 Aligned_cols=43 Identities=19% Similarity=0.522 Sum_probs=29.3
Q ss_pred CCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
..+..++|+||+|. ++.+....+++.+.....+..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999994 66666667777666655666666666443
No 138
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.024 Score=56.13 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=22.2
Q ss_pred HHHHHHhcCC--EEEEEcCCCChHHHHHHHHHH
Q 007931 57 AILYLVETHA--TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 57 ~il~~l~~~~--~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+...+..++ .+++.||+|+|||+++-.+..
T Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 36 RLKHYVKTGSMPHLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp HHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3444555553 699999999999977765543
No 139
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.22 E-value=0.015 Score=58.13 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 55 ~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+.+...+..++.++|.||.|+|||+++-.+....
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 34455566667899999999999999988776543
No 140
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.22 E-value=0.0091 Score=65.32 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHH
Q 007931 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (584)
Q Consensus 51 ~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~ 117 (584)
+...|.+++..+..++.++|.||+|||||+.+-.++.......+.++++++|+. .|+..+.+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn-~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN-IAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH-HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH-HHHHHHHHHHHh
Confidence 456777777777778899999999999997766554432211445667777665 556677776654
No 141
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.16 E-value=0.024 Score=52.93 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=28.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
.+...++.|+-||||||.+-+.+.... ..+.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecC
Confidence 467899999999999988887776653 2445566665443
No 142
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.13 E-value=0.015 Score=59.13 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCccC
Q 007931 450 ASPPPEAMIRALEVLYSLGVLDD 472 (584)
Q Consensus 450 ~~p~~~~~~~al~~L~~~g~i~~ 472 (584)
+|.....+.++++.|...|.|..
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEE
Confidence 45567889999999999999974
No 143
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.04 E-value=0.015 Score=60.99 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHH
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV 115 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~ 115 (584)
+.++..+..++.++|.|++|+|||+++-+++.......+.++++++..- ...++..|+
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS--CHHHHHHHH
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHH
Confidence 4455667788999999999999999888877765433344677776432 223444443
No 144
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.99 E-value=0.013 Score=56.96 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=32.8
Q ss_pred cccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHH--hcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLV--ETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l--~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
-+|+++.-.+.....+.+.- ..|+ ...+....+ .....+++.||+|+|||+++-.+...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVV-ELPL--KHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHT-HHHH--HCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHH-HHHh--hCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34666665554444443221 1111 112223332 45678999999999999877655443
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.92 E-value=0.06 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
...+++.||+|+|||+++-.+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999977765544
No 146
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.92 E-value=0.031 Score=55.65 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+.+++.||+|+|||+++-.+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 367999999999999877655544
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.90 E-value=0.0095 Score=60.56 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
++.++|.||+|+|||+++-.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999888765543
No 148
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.021 Score=57.35 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCE--EEEEcCCCChHHHHHHHHHH
Q 007931 56 TAILYLVETHAT--TIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 56 ~~il~~l~~~~~--viv~a~TGsGKT~~ip~~l~ 87 (584)
+.+...+..++. +++.||+|+|||+++-.+..
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345556667765 99999999999988765544
No 149
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.86 E-value=0.012 Score=60.64 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=19.1
Q ss_pred CCEEEE--EcCCCChHHHHHHHHHHh
Q 007931 65 HATTII--VGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv--~a~TGsGKT~~ip~~l~~ 88 (584)
.+.++| .||.|+|||+++-.+...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 457888 999999999888766543
No 150
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.84 E-value=0.026 Score=54.05 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=19.6
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
....+++.||+|+|||+++-.+..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999877655443
No 151
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.83 E-value=0.009 Score=56.05 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=30.2
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.+..+..++|.||+||||||++-+++..... .+++++++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~ 60 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTE 60 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcc
Confidence 4567889999999999999888777644322 34556666544
No 152
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.78 E-value=0.02 Score=64.18 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHH
Q 007931 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (584)
Q Consensus 51 ~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~ 117 (584)
+...|.+++..+..++.++|.||+|||||+.+-.++.......+.++++++|+. .|+..+.+++.+
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn-~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN-IAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSH-HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcH-HHHHHHHHHHHH
Confidence 456677777777778899999999999997766554432211345667777665 566677776653
No 153
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.015 Score=65.36 Aligned_cols=66 Identities=18% Similarity=0.341 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHH
Q 007931 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (584)
Q Consensus 51 ~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~ 117 (584)
+...|.+++..+..++.++|.||.|||||+.+...+.......+.++++++|+. .|+..+.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn-~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN-VAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH-HHHHHHHHHHHh
Confidence 456777777777778899999999999997665444322111345667777665 566677777765
No 154
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.70 E-value=0.044 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=18.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+++.||+|+|||+++-.+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 5799999999999987765543
No 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.68 E-value=0.035 Score=54.34 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+.+++.||+|+|||+++-.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 578999999999999887655443
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.60 E-value=0.027 Score=55.71 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=21.4
Q ss_pred HHHHHHhcCC--EEEEEcCCCChHHHHHHHHHH
Q 007931 57 AILYLVETHA--TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 57 ~il~~l~~~~--~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+...+..++ .+++.||+|+|||+++-.+..
T Consensus 32 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 32 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3444454443 499999999999977765543
No 157
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.59 E-value=0.031 Score=60.63 Aligned_cols=110 Identities=20% Similarity=0.323 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEeeE
Q 007931 53 KYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYT 130 (584)
Q Consensus 53 ~~~~~il~~l~~--~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~ 130 (584)
..|.++++.+.. ..+.+|+|+-|.|||+.+-.++.... ..+++++|..+ +++.+.+...+
T Consensus 178 ~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~-a~~~l~~~~~~------------- 239 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKA-STDVLAQFAGE------------- 239 (671)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCC-SCHHHHHHHGG-------------
T ss_pred HHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHH-HHHHHHHHhhC-------------
Confidence 345566666655 56789999999999988877766542 23455555543 33333332110
Q ss_pred eeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecccC
Q 007931 131 IRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (584)
Q Consensus 131 ~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~~ 207 (584)
.|-|..|+.++.. ..+.+++|||||= .+....+..++. ....|+||.|++
T Consensus 240 ------------~i~~~~Pd~~~~~------~~~~dlliVDEAA--aIp~pll~~ll~-------~~~~v~~~tTv~ 289 (671)
T 2zpa_A 240 ------------KFRFIAPDALLAS------DEQADWLVVDEAA--AIPAPLLHQLVS-------RFPRTLLTTTVQ 289 (671)
T ss_dssp ------------GCCBCCHHHHHHS------CCCCSEEEEETGG--GSCHHHHHHHHT-------TSSEEEEEEEBS
T ss_pred ------------CeEEeCchhhhhC------cccCCEEEEEchh--cCCHHHHHHHHh-------hCCeEEEEecCC
Confidence 1556677765432 3468999999997 555555544443 234577888883
No 158
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.57 E-value=0.036 Score=56.75 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...+++.||+|+|||+++-.+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999877655433
No 159
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.49 E-value=0.086 Score=54.85 Aligned_cols=37 Identities=24% Similarity=0.140 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCcc-CCCeEEEEe
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~-~~~~~I~v~ 101 (584)
.+.+++.||+|+|||+++-.+....... .+.+++++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3579999999999998776544322111 234455554
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.48 E-value=0.23 Score=53.96 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 54 ~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+.+..++..+..+++.||+|+||||++-.+..
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 3456777788899999999999999988765544
No 161
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.34 E-value=0.14 Score=52.60 Aligned_cols=124 Identities=23% Similarity=0.236 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCce
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~ 143 (584)
+.++.++|++|+||||.+..+...... .++++ ++-..+.+.++.......+...+..+-. . . . .
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~--~---~--~---~---- 162 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE--V---M--D---G---- 162 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE--C---C--T---T----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeeccccCchhHHHHHHhcccCCccEEe--c---C--C---C----
Confidence 347888999999999888766544332 23344 4445555555543333334444443210 0 0 0 0
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
..|..+.+.........++++||||=+-....+......+.+......++.-++.+.|+.
T Consensus 163 ---~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t 222 (425)
T 2ffh_A 163 ---ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (425)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 123333221111100147899999987622233333332222222234555566677764
No 162
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.30 E-value=0.1 Score=52.15 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+.+.. +.. +.++|.||.|+|||+++-.+....
T Consensus 23 ~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 23 EKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 33444 444 799999999999999988776553
No 163
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.25 E-value=0.051 Score=56.79 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE-eCchHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRL 106 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v-~~~r~l 106 (584)
+.++.|.|++||||||++-.+..... ..++.+.+. ..+.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTFRA 334 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCTTCH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEecCcccch
Confidence 55899999999999998876654332 234555444 344344
No 164
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.11 E-value=0.11 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+.++++||+|+|||+++-.+..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999998877665544
No 165
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.06 E-value=0.035 Score=56.08 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
...+++.||+|+|||+++-.+..+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3469999999999998776555443
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.95 E-value=0.042 Score=57.31 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=22.1
Q ss_pred HHHHHhcCC--EEEEEcCCCChHHHHHHHHHHh
Q 007931 58 ILYLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 58 il~~l~~~~--~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+...+..++ .+++.||+|+|||+++-.+...
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 334455554 5999999999999877655443
No 167
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.92 E-value=0.052 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+++.||+|+|||+++-.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999877655443
No 168
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.87 E-value=0.15 Score=49.84 Aligned_cols=123 Identities=23% Similarity=0.211 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCce
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~ 143 (584)
+.++.++|++|+||||.+..+...... .++++ ++-..+++-++....+..+...+..+-. + ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~-------~~~----- 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--E-------PGE----- 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--C-------TTC-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--c-------CCC-----
Confidence 347888999999999888766544332 34444 3444455444443333334444443211 0 000
Q ss_pred EEEechHHHHHHHccCCCCCCCcEEEEeCCCcCcc--chhHHHHHHHHHH-HhcCCceEEEEeccc
Q 007931 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI--STDILLGLLKKIQ-RCRSDLRLIISSATI 206 (584)
Q Consensus 144 I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~--~~d~l~~~l~~~~-~~~~~~~vi~~SAT~ 206 (584)
..|..++........-.++++||||=+- +.. ..+.+..-++.+. ...++.-++.+.|+.
T Consensus 163 ---~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 ---KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1233333222111001478999999987 333 3333433333332 234566667777765
No 169
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.86 E-value=0.23 Score=49.15 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE-eCchHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAV 108 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v-~~~r~la~ 108 (584)
++++.++|++|+||||.+-.+...... .+++++++ ..+++.++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~a 148 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAGA 148 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhH
Confidence 347889999999999888766543322 34455443 44544443
No 170
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.06 Score=55.64 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=34.0
Q ss_pred ccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHH--hcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLV--ETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 28 ~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l--~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+|+|..=-...-.+|.+ .-.+|+.. .+....+ .-.+-+++.||+|||||+++-.+..+.
T Consensus 207 t~~DIgGl~~~k~~L~e-~V~~pl~~--pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLRE-VVELPLLS--PERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCSSCTTCHHHHHHHHH-HTHHHHHC--HHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CHHHhccHHHHHHHHHH-HHHHHhcC--HHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 47776655544444422 23344432 2333333 345789999999999997665554443
No 171
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.68 E-value=0.046 Score=54.34 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...+++.||+|+|||+++-.+..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999777655443
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.59 E-value=0.04 Score=54.29 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=17.2
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+++.||+|+|||+.+-.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHH
Confidence 599999999999977765543
No 173
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.56 E-value=0.062 Score=56.03 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+.+++.||+|+|||+++-.+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999877655544
No 174
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.51 E-value=0.21 Score=52.60 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=61.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceEE
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I~ 145 (584)
+++++|++|+||||++-.++..... .+.++ ++-.-+.+-++....+......+..+. +. ....
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~---~~------~~~~------ 166 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNATKARIPFY---GS------YTEM------ 166 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE---EC------CCCS------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHhhccCceEE---cc------CCCC------
Confidence 6888999999999988877654432 23334 333434444443333333334444321 10 0001
Q ss_pred EechHHHHH-HHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 146 FLTDGVLLR-EMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 146 ~~T~~~ll~-~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
.|..+.. .+.. ....+++++|||-+-....+.++...+.+......++.-++++.|+.
T Consensus 167 --dp~~i~~~al~~-~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 167 --DPVIIASEGVEK-FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp --CHHHHHHHHHHH-HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred --CHHHHHHHHHHH-HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc
Confidence 1212211 1110 00146899999998733333334333322222235676788888887
No 175
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.50 E-value=0.054 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=17.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+++.||+|+|||+++-.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999977764443
No 176
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.45 E-value=0.031 Score=51.79 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 54 ~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
-+..+++.+..++.+.|.||+||||||++-.+.-.
T Consensus 11 g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 11 GQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred hHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567888899999999999999999988766543
No 177
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.43 E-value=0.16 Score=51.20 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=32.6
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
.+..+..++|.|++|+|||+++-+++.... ..+.+++|+....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~-~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQ-KAGGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHH-HCCCeEEEEECCC
Confidence 456788999999999999988887776543 2355678877654
No 178
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.071 Score=54.27 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+-+++.||+|||||.++-.+..+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 467999999999999666554443
No 179
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.21 E-value=0.027 Score=54.21 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..+..++|+|||||||||++-.++-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 67788999999999999998876554
No 180
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.21 E-value=0.04 Score=57.07 Aligned_cols=120 Identities=23% Similarity=0.277 Sum_probs=57.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v-~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
.+++++|++|+||||++-.+...... .+.+++++ +-+.+-++....+..+...+..+....+ ...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~-~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~--------~~~----- 165 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK-RGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDET--------RTK----- 165 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH-HHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSS--------SCC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccccCchHHHHHHHhhhccCcceEecCC--------CCC-----
Confidence 37899999999999888766554432 23334333 3333322221111222333332211000 001
Q ss_pred EEech-HHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEeccc
Q 007931 145 KFLTD-GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (584)
Q Consensus 145 ~~~T~-~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~ 206 (584)
.| +.+.+.+.. +.++++||||.+-....+. .+...+..+.. ..++.-++.+.|+.
T Consensus 166 ---dp~~i~~~~l~~---~~~~D~vIIDT~G~~~~~~-~l~~~l~~i~~~~~~d~vllVvda~~ 222 (432)
T 2v3c_C 166 ---SPVDIVKEGMEK---FKKADVLIIDTAGRHKEEK-GLLEEMKQIKEITNPDEIILVIDGTI 222 (432)
T ss_dssp ---SSSTTHHHHHHT---TSSCSEEEEECCCSCSSHH-HHHHHHHHTTSSSCCSEEEEEEEGGG
T ss_pred ---CHHHHHHHHHHH---hhCCCEEEEcCCCCccccH-HHHHHHHHHHHHhcCcceeEEeeccc
Confidence 11 112222221 2678999999998333322 23333333222 24565566777776
No 181
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.18 E-value=0.16 Score=56.83 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=15.8
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~ 85 (584)
.+++.||||+|||+++-.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6999999999999666544
No 182
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.14 E-value=0.04 Score=55.36 Aligned_cols=45 Identities=27% Similarity=0.178 Sum_probs=33.4
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~l 106 (584)
.+..+.+++|.||+||||||++-+++..... .+++++|+......
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHAL 101 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEeccccc
Confidence 4556789999999999999988877765432 45667888765433
No 183
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.035 Score=57.33 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=33.0
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHH--hcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLV--ETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l--~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
..+|++..--...-.+|.+ .-.+|+.. .+....+ .-.+-+++.||+|||||+++-.+..+.
T Consensus 177 ~~t~~digGl~~~k~~l~e-~v~~pl~~--pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVE-AIVLPMKR--ADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHH-HTHHHHHC--SHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCChHhcCcHHHHHHHHHH-HHHHHHhC--HHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 3457776655544444322 12233311 1222222 234679999999999997765554443
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.91 E-value=0.036 Score=49.93 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=20.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.++.++|+||+||||||++-.+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999998766543
No 185
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.82 E-value=0.35 Score=49.98 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=60.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCcceeEEeeEeeccCcCCCCCceE
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~-I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~~~~~~~~~~~~~~~I 144 (584)
.+++++|++|+||||.+..+........+.++ ++-+-+.+-++.......+...+..+-. .. ..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~------------~~-~~-- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP------------SD-VG-- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC------------CC-SS--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe------------CC-CC--
Confidence 47888899999999888766654433213344 3334444444433323334444433210 00 00
Q ss_pred EEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHH-hcCCceEEEEeccc
Q 007931 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (584)
Q Consensus 145 ~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~-~~~~~~vi~~SAT~ 206 (584)
.+|..+++.........++++||||=+- +....+.+..-+..+.. ..++.-++.+.|+.
T Consensus 166 --~dp~~i~~~~l~~~~~~~~D~VIIDTpG-~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 166 --QKPVDIVNAALKEAKLKFYDVLLVDTAG-RLHVDEAMMDEIKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp --SCHHHHHHHHHHHHHHTTCSEEEEECCC-CCTTCHHHHHHHHHHHHHSCCSEEEEEEETTB
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccccHHHHHHHHHHHHhhcCcceeEEeecch
Confidence 1344332221111001468999999975 33222233333333332 34555555577775
No 186
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.63 E-value=0.095 Score=51.39 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=38.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCcc-CCCeEEEEeCchHHHHHHHHHHHHHHhCCcc
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~-~~~~~I~v~~~r~la~~~~~~~~~~~~~~~v 123 (584)
+..+ .+.|.||+|+|||++.-+++...... .+++++|+.....+... .++.+|...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~ 82 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDP 82 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCG
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCH
Confidence 4445 79999999999999988887765432 25678998877655432 245555543
No 187
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.62 E-value=0.034 Score=52.67 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=32.4
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.+..+..++|.|++|+|||+++-+++.+.....+.++++++-.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4566889999999999999888888776544445567777643
No 188
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.59 E-value=0.05 Score=54.81 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=26.6
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
..+..++|+|||||||||++-.++-......++.++.+-.|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~ 161 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP 161 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence 45668999999999999988765443322223444444444
No 189
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.54 E-value=0.041 Score=50.43 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..+..+.+.||+||||||++-.+.-
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHh
Confidence 34678999999999999998876654
No 190
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.52 E-value=0.05 Score=55.01 Aligned_cols=45 Identities=29% Similarity=0.411 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeC
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~ 102 (584)
+.+--.+..+..++|+|||||||||++-.++... ......|.+--
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~--~~~~g~I~ie~ 210 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI--PFDQRLITIED 210 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS--CTTSCEEEEES
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC--CCCceEEEECC
Confidence 3444567889999999999999999988665433 23334455543
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.51 E-value=0.1 Score=54.62 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=18.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+.+++.||+|+|||+++-.+..+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999877655443
No 192
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.44 E-value=0.039 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=19.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.++.++|+||+||||||++-.+.-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 567899999999999999876654
No 193
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.36 E-value=0.091 Score=51.62 Aligned_cols=44 Identities=30% Similarity=0.424 Sum_probs=28.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe-CchHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAV 108 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~-~~r~la~ 108 (584)
.+.++.+.||+||||||++-.+...... .++++.+.. .+.+.++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a 143 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAA 143 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchhH
Confidence 3568899999999999988766543322 345554443 3444443
No 194
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.25 E-value=0.042 Score=52.03 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=28.9
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeC
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~ 102 (584)
.+..+..+.|.||+||||||++-.++.......+...+++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 567899999999999999999877663322122334455543
No 195
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.19 E-value=0.053 Score=57.47 Aligned_cols=31 Identities=35% Similarity=0.545 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+.+-..+..+.+++|+|||||||||++-.++
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 3455567888899999999999999986554
No 196
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.13 E-value=0.047 Score=55.42 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=28.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
+..+..++|+|||||||||++-.++........+.++++-.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 467889999999999999988766543322223554444433
No 197
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.13 E-value=0.029 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.4
Q ss_pred hcCCEEEEEcCCCChHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQ 84 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~ 84 (584)
..+..+.+.||+||||||++-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4678899999999999998875
No 198
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.12 E-value=0.056 Score=49.92 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+..++++||+||||||++-.+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35788999999999999998766543
No 199
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.10 E-value=0.074 Score=56.05 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
....+++.||+|+|||+++-.+..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH
Confidence 346799999999999977755543
No 200
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.09 E-value=0.13 Score=53.00 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+-+++.||+|||||+++-.+..+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4679999999999997766554443
No 201
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.03 E-value=0.08 Score=49.81 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=31.5
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccC-----CCeEEEEeCc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQP 103 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~-----~~~~I~v~~~ 103 (584)
.+..+..++|.||+|+||||++-+++....... +.+++++.-.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 456789999999999999999888876533321 4566777644
No 202
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.93 E-value=0.054 Score=50.47 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=21.6
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+..++.+.|+||+||||||++-.+.-.
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567889999999999999998766543
No 203
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.91 E-value=0.058 Score=52.78 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeC
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~ 102 (584)
+.+.-.+..+..++|.||+|+||||++-+++.......+.+++++..
T Consensus 26 d~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp HHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred HHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34455577899999999999999998877766543333435666654
No 204
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.91 E-value=0.13 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+-+++.||+|||||.++-.+..+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 467999999999999766554443
No 205
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.91 E-value=0.065 Score=48.97 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=21.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.++.++|+||+|+||||++-.++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 5788999999999999998776644
No 206
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.88 E-value=0.042 Score=49.73 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=21.8
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..+..+++.||+||||||++-.+.-
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 355678999999999999999876643
No 207
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.88 E-value=0.063 Score=49.48 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..++.+.|.||+||||||++-.+.-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 578899999999999999998876543
No 208
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.77 E-value=0.19 Score=55.45 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHH---Hhc-CccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 007931 52 YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYL---KEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (584)
Q Consensus 52 ~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l---~~~-~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~ 120 (584)
...|.+++.. .+..++|.|+.|||||+.+-.-+ +.. +. ....++++|.++.. +.++.+|+.+..+
T Consensus 4 ~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-~~~~IL~lTfT~~A-a~em~~Rl~~~l~ 72 (673)
T 1uaa_A 4 NPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKA-AREMKERVGQTLG 72 (673)
T ss_dssp CHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESSHHH-HHHHHHHHHHHSC
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHH-HHHHHHHHHHHcC
Confidence 4556666653 36779999999999996654322 222 22 23467788877654 4567788877654
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.76 E-value=0.19 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+-+++.||+|||||+++-.+..+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999776655443
No 210
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.67 E-value=0.077 Score=50.02 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=31.7
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
.+..+..++|.||+|+|||+++-+++.... ..+.+++++....
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccC
Confidence 456789999999999999988777766543 2355677776543
No 211
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.62 E-value=0.072 Score=49.67 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=21.8
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+..++.++|+||+||||||++-.+.-.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4567899999999999999998766544
No 212
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.59 E-value=0.067 Score=48.99 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..+..+++.||+||||||++-.+.-
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34678899999999999998876543
No 213
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.54 E-value=0.065 Score=48.42 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
++.+.|.||+||||||++-.+.-.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999998766543
No 214
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.53 E-value=0.14 Score=45.66 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=22.9
Q ss_pred HHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHH
Q 007931 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 56 ~~il~~l~~--~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+.+...+.. ...+++.||+|+|||+++-.+..
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 444555543 46899999999999987765544
No 215
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.51 E-value=0.17 Score=52.06 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=25.5
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v 100 (584)
..+..++|+|||||||||++-.++-.... ..+.++++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~~ 201 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTV 201 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEEe
Confidence 34668999999999999998766544322 23444444
No 216
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.47 E-value=0.14 Score=51.51 Aligned_cols=43 Identities=30% Similarity=0.433 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe-CchHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAV 108 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~-~~r~la~ 108 (584)
+.++.++||+||||||++-.+...... .++++.+.. .+.+.++
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a 200 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAA 200 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccch
Confidence 457899999999999988766543322 345554443 3444443
No 217
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.46 E-value=0.067 Score=53.31 Aligned_cols=31 Identities=39% Similarity=0.458 Sum_probs=24.5
Q ss_pred HHHHHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 57 AILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 57 ~il~~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+--.+..+.++.|+|||||||||++-.++-
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGG
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445567899999999999999998875543
No 218
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.10 E-value=0.11 Score=63.07 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=33.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~ 105 (584)
+..+.++++.||+|+|||+++-+++.+.. ..+.+++++...-.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHA 1466 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcccc
Confidence 45689999999999999988888877654 34667788776543
No 219
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.02 E-value=0.34 Score=52.24 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.++||+||||||++-.+.-
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999999876653
No 220
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.91 E-value=0.14 Score=47.56 Aligned_cols=43 Identities=33% Similarity=0.275 Sum_probs=30.4
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCcc-----CCCeEEEEeCc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQP 103 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~-----~~~~~I~v~~~ 103 (584)
.+..++.+.|.||+||||||++-.++...... ..+..+++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 45678899999999999999988776533221 13456666554
No 221
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.87 E-value=0.15 Score=50.03 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=25.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEe
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (584)
.+.++.+.||+||||||++-.+...... .++++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 3568999999999999998766544322 344544443
No 222
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.86 E-value=0.075 Score=48.81 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+..+..++++||+||||||++-.+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456788999999999999988766543
No 223
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.83 E-value=0.16 Score=50.26 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHH
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 116 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~ 116 (584)
++++..+..+..++|.|++|+|||+++-+++..... .+.++++++-. ....++..|+.
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE--~s~~~l~~R~~ 116 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLE--MGKKENIKRLI 116 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESS--SCHHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECC--CCHHHHHHHHH
Confidence 445566788999999999999999888887766543 33567777644 33344444443
No 224
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=91.81 E-value=0.56 Score=46.01 Aligned_cols=110 Identities=10% Similarity=-0.048 Sum_probs=63.4
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCccccc----
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLT---- 350 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e~Gid---- 350 (584)
.+.++|||+...+..+-+.+++.. .++...-+.|.....+++ . .+....|-+.|....-|++
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~---------~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~~gin~~~~ 189 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLG---------NKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGINFTKYPIK 189 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTT---------SSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCC
T ss_pred CCCEEEEEECChhHHHHHHHHHhc---------CCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCCCCcCcccc
Confidence 467899999998888777777643 378888899885543322 1 2445666666776666675
Q ss_pred -cCCeEEEEecCCccceeecCCCCcccceeeeccH-HhHHHhccccC--CCCCcEEEEccChHHHhh
Q 007931 351 -LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISK-ASARQRAGRAG--RVRPGKCYRLYTEEYFVK 413 (584)
Q Consensus 351 -ip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~s~-~~~~QR~GRaG--R~~~G~~~~l~~~~~~~~ 413 (584)
.-..+.||- ||+.-+ |-+. -+++.|+-|.| +.++-.+|||++....++
T Consensus 190 nl~~aD~VI~--------~DsdwN-------p~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 190 SKARFDMLIC--------LDTTVD-------TSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCSCCSEEEE--------CSTTCC-------TTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred cCCCCCEEEE--------ECCCCC-------CCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 456666764 444433 2222 23333444442 235557999999776655
No 225
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.80 E-value=0.15 Score=45.38 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=23.3
Q ss_pred HHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 56 ~~il~~l~~--~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+.+.+.+.. ...+++.||+|+|||+++-.+...
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 334444433 568999999999999887655543
No 226
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.79 E-value=0.11 Score=47.57 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+..+..+++.|++||||||+.-.+....
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4567889999999999999887665443
No 227
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.68 E-value=0.47 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+.+++.||+|+|||+++-.+...
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999877655443
No 228
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.58 E-value=0.18 Score=50.08 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=32.9
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccC-----CCeEEEEeCch
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQPR 104 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~-----~~~~I~v~~~r 104 (584)
.+..+..++|.||+|+|||+++-+++....... +++++|+.-..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 456678999999999999988888877643221 45778887554
No 229
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=91.56 E-value=0.36 Score=49.49 Aligned_cols=39 Identities=10% Similarity=0.274 Sum_probs=29.1
Q ss_pred cEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEecc
Q 007931 166 SVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (584)
Q Consensus 166 ~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT 205 (584)
.++|+||.. -+++......+...+.....+.++|+.|--
T Consensus 317 ~~LlLDEpt-~~LD~~~~~~l~~~L~~l~~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVD-AGIGGAAAIAVAEQLSRLADTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTT-TTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CEEEEECCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 899999998 577777777777776665556777776544
No 230
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.51 E-value=0.066 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=17.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..+..+.|.||+||||||++-.+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999999887655
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.50 E-value=0.18 Score=56.22 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=18.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+-+++.||.|||||+++-.+..+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999777655433
No 232
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.48 E-value=0.31 Score=54.45 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=16.5
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l 86 (584)
.+++.||||+|||+++-.+.
T Consensus 490 ~~ll~G~~GtGKT~la~~la 509 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLS 509 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 69999999999997765443
No 233
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.18 E-value=0.13 Score=46.48 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=19.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+-+||+||+|+||||++-.++.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999887665543
No 234
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.18 E-value=0.097 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999999999887554
No 235
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.11 E-value=0.23 Score=49.74 Aligned_cols=44 Identities=27% Similarity=0.275 Sum_probs=32.9
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCcc-----CCCeEEEEeCch
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQPR 104 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~-----~~~~~I~v~~~r 104 (584)
.+..+.+++|.||+|||||+++-+++...... .+++++|+.-..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 34567899999999999999888887764332 346778887654
No 236
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.08 E-value=0.19 Score=55.96 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=65.4
Q ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCC-CccccccCCe
Q 007931 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI-AETSLTLEGI 354 (584)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i-~e~Gidip~v 354 (584)
+.+++|.+|++.-+++.++.+.+.+.. .++.+..+||+++..++..+++...+|..+|+|+|.. +...+.+.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~-----~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK-----FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC-----SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh-----cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 568999999999999999998887632 2578999999999999998888888899999999974 4456778888
Q ss_pred EEEE
Q 007931 355 VYVV 358 (584)
Q Consensus 355 ~~VI 358 (584)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8876
No 237
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.03 E-value=0.12 Score=48.00 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=22.9
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+.+.++++|.||+||||+||...+....
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456789999999999999998776554
No 238
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.88 E-value=0.11 Score=45.74 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.4
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
..++++.+.||.||||||++-.+.-..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 678899999999999999887665443
No 239
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.76 E-value=0.13 Score=50.51 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
...++|+||||||||+++-.+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 45789999999999988765543
No 240
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.75 E-value=0.13 Score=45.31 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.5
Q ss_pred CEEEEEcCCCChHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~ 85 (584)
.+++++|++||||||++-.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999988766
No 241
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.75 E-value=0.15 Score=46.48 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=20.4
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+.+++|.||.||||||++-.+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998876644
No 242
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.75 E-value=0.14 Score=50.11 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=24.5
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 58 il~~l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+--.+..++.+.|+||+||||||++-.++-.
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3444578899999999999999988766543
No 243
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=90.71 E-value=0.38 Score=53.37 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHH---HHh-cCccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 007931 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQY---LKE-AGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (584)
Q Consensus 51 ~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~---l~~-~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~ 120 (584)
+...|.+++.. .+..++|.|+.|||||+.+-.- ++. .+. ....++++|.++..+. ++.+|+.+..+
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~-~p~~IL~vTFTnkAA~-Em~~Rl~~~l~ 81 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-APWNILAITFTNKAAR-EMRERVQSLLG 81 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-CGGGEEEEESSHHHHH-HHHHHHHHHHG
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHH-HHHHHHHHHhc
Confidence 45666666654 3456899999999999655432 222 222 2345788887775554 56667666543
No 244
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.70 E-value=0.12 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++|+||||||||++.-.+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999987765543
No 245
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.67 E-value=0.18 Score=48.79 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=23.8
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+..+.+++|.||+||||||++-+++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999999988877653
No 246
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.54 E-value=0.27 Score=55.70 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=16.6
Q ss_pred CEEEEEcCCCChHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l 86 (584)
..+++.||||+|||+++-.+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 379999999999997665443
No 247
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.52 E-value=0.15 Score=53.19 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHH-HHHhCC
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV-AEEMGV 121 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~-~~~~~~ 121 (584)
++++..+..++.++|.|++|+|||+++-+++.......+.++++++-. ....++..|+ +...+.
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~~~~~~i 255 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMMCSEARI 255 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHHHHHTTC
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHHHHHcCC
Confidence 445556778899999999999999888887776544345567777653 2333555553 344444
No 248
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.39 E-value=0.13 Score=48.63 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999987654
No 249
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.36 E-value=0.19 Score=45.01 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...++++|++||||||+.-.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999988766544
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.34 E-value=0.13 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l 86 (584)
.+..+.|.||+||||||++-.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999886554
No 251
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.33 E-value=0.16 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+..++|.|+.||||||++-.+...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999988765443
No 252
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.30 E-value=0.17 Score=48.29 Aligned_cols=22 Identities=41% Similarity=0.406 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.++|+|||||||||+.-.+...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999988766543
No 253
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.27 E-value=0.13 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999999987654
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.26 E-value=0.3 Score=55.39 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=22.8
Q ss_pred HHHHHHHhc--CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 56 ~~il~~l~~--~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+++.+.. .++++++||+|+|||+++-.+...
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 334444433 357999999999999877655543
No 255
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.14 E-value=0.19 Score=45.20 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..+++.|+.||||||++-.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999998876654
No 256
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.13 E-value=0.13 Score=48.08 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999987553
No 257
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=90.06 E-value=0.33 Score=57.36 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=41.9
Q ss_pred CCchHHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCcc-----CCCeEEEEeCchHHHHHHHHHHHHHHh
Q 007931 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQPRRLAVQAVASRVAEEM 119 (584)
Q Consensus 49 lP~~~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~-----~~~~~I~v~~~r~la~~~~~~~~~~~~ 119 (584)
......|.+++..- +++++|.|..|||||+.+-.-+...... ...+++++|.++..+ ..+.+|+...+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa-~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASA-AEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHH-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHH-HHHHHHHHHHH
Confidence 44566677666643 6789999999999997665433222111 224567777776554 46666665544
No 258
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.89 E-value=0.16 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++|.||||+|||+++-.++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56689999999999988766543
No 259
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.88 E-value=0.13 Score=47.63 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568889999999999999987654
No 260
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.86 E-value=0.22 Score=46.39 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.....+++.|++||||||++-.+....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999987665443
No 261
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.85 E-value=0.18 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=18.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..++|+||||||||+++-.+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46899999999999887665443
No 262
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.84 E-value=0.19 Score=49.97 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHH
Q 007931 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV 115 (584)
Q Consensus 55 ~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~ 115 (584)
-++++..+..++.++|.|++|+|||+++-+++..... .+.+++|++-. ....++..|+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlE--ms~~ql~~Rl 93 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLE--MSAEQLALRA 93 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESS--SCHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCC--CCHHHHHHHH
Confidence 3455666788999999999999999888877766543 45566776543 3344555553
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.79 E-value=0.21 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+..++++|+.||||||+.-.+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999888765543
No 264
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.73 E-value=0.15 Score=47.76 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
..++.+.|.||+||||||++-.+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999987654
No 265
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.73 E-value=0.15 Score=46.02 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+++.||+||||||++-.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4688999999999998877653
No 266
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.72 E-value=0.15 Score=45.69 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+..+++.|+.||||||+.-.+...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999998766543
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.71 E-value=0.2 Score=44.13 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.++|.|+.||||||++-.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999988766544
No 268
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.70 E-value=0.15 Score=48.43 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999987654
No 269
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.67 E-value=0.17 Score=48.76 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999999876543
No 270
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.66 E-value=0.19 Score=53.24 Aligned_cols=60 Identities=15% Similarity=0.041 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHH
Q 007931 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV 115 (584)
Q Consensus 54 ~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~ 115 (584)
.-++++..+..+..++|.|++|+|||+++-+++.......+.++++++-.- ...++..|+
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~--s~~~l~~r~ 290 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDL 290 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS--CHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHH
Confidence 345566667788999999999999999998888876543355677776432 233555543
No 271
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.58 E-value=0.18 Score=52.38 Aligned_cols=47 Identities=15% Similarity=0.064 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 56 ~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
++++..+..+..++|.|++|+|||+++-+++...... +.++++++-.
T Consensus 188 D~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlE 234 (444)
T 3bgw_A 188 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE 234 (444)
T ss_dssp HHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred HhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECC
Confidence 4555567788999999999999999888887766543 5567777543
No 272
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.57 E-value=0.093 Score=62.34 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..|+.+-|+|+|||||||++-.+..
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhc
Confidence 35788999999999999998875543
No 273
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.52 E-value=0.17 Score=48.20 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999999876653
No 274
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.52 E-value=0.27 Score=44.31 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+.....+++.|+.||||||+.-.+...
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 446678999999999999998766543
No 275
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.48 E-value=0.18 Score=46.33 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=19.7
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+..+.|.||+||||||++-.+.-
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999998876544
No 276
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.47 E-value=0.16 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999999999987554
No 277
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.44 E-value=0.19 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..+++.|+.||||||++-.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999998876543
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.44 E-value=0.21 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=18.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+++.|+.||||||++-.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999998876654
No 279
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.40 E-value=0.16 Score=47.93 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=21.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999987554
No 280
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.39 E-value=0.16 Score=48.50 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999987554
No 281
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.37 E-value=0.17 Score=48.51 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999987654
No 282
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.37 E-value=0.17 Score=48.52 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999987554
No 283
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.33 E-value=0.29 Score=44.23 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=22.2
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+.....+++.|+.||||||+.-.+...
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3445678999999999999988766544
No 284
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.30 E-value=0.13 Score=50.64 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|+||+||||||++-.+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHH
Confidence 3578899999999999999986554
No 285
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.29 E-value=0.23 Score=44.48 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=17.3
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+.+.||+||||||++-.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998865543
No 286
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.24 E-value=0.24 Score=45.62 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcC
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEAG 90 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~~ 90 (584)
++++.||+||||+||...+....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999987766553
No 287
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.24 E-value=0.18 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHH
Confidence 3578899999999999999987554
No 288
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.22 E-value=0.15 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999987654
No 289
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.17 E-value=0.18 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999987654
No 290
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.08 E-value=0.2 Score=45.74 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=20.6
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+.+++|.||.||||||++-.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999988766543
No 291
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.03 E-value=0.3 Score=49.83 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=29.7
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCcc-----CCCeEEEEeCc
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQP 103 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~-----~~~~~I~v~~~ 103 (584)
..+..+.|.||+||||||++-+++...... .+++++++.-.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 457899999999999999988776544321 24567777543
No 292
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.02 E-value=0.24 Score=42.94 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=17.4
Q ss_pred CEEEEEcCCCChHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l 86 (584)
...+|.||+|||||+++-.+.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999998876543
No 293
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.02 E-value=0.21 Score=45.45 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..+++.|+.||||||++-.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999876654
No 294
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.00 E-value=0.2 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...++++.|+.||||||++-.+...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4567999999999999988765543
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.00 E-value=0.27 Score=49.33 Aligned_cols=41 Identities=34% Similarity=0.379 Sum_probs=29.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHhcCc--cC---CCeEEEEeC
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKEAGW--AD---GGRVIACTQ 102 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~~~~--~~---~~~~I~v~~ 102 (584)
+..+.++.|.||+||||||++-+++..... .. ++++|++.-
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 456789999999999999998887765421 11 256677654
No 296
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.98 E-value=0.38 Score=43.62 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=24.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v 100 (584)
....++|.+++|.||||.+--..+... ..+.+++++
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~v 62 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVV 62 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 455799999999999988766555442 345555444
No 297
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.96 E-value=0.26 Score=44.00 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=18.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
...+|+||+|||||+++-.+..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999988875543
No 298
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.84 E-value=0.15 Score=54.34 Aligned_cols=46 Identities=22% Similarity=0.138 Sum_probs=31.4
Q ss_pred HHHH-HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeC
Q 007931 57 AILY-LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (584)
Q Consensus 57 ~il~-~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~ 102 (584)
.+.- .+..+.++.|.||+||||||++-++++......+...|++.-
T Consensus 30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3444 567899999999999999999988654332322333566543
No 299
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.82 E-value=0.19 Score=48.41 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999999987654
No 300
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.81 E-value=0.2 Score=47.70 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3568899999999999999987654
No 301
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.72 E-value=0.2 Score=48.57 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4578899999999999999987554
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.72 E-value=0.25 Score=44.79 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
++.+.+.||+||||||++-.+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhh
Confidence 356889999999999988765543
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.69 E-value=0.2 Score=47.80 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999987654
No 304
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.60 E-value=0.19 Score=45.27 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+..+++.|+.||||||++-.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999998766543
No 305
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.56 E-value=0.43 Score=46.46 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...+++.||+|+|||+++-.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999777655443
No 306
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.53 E-value=0.21 Score=48.04 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999999999987553
No 307
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.53 E-value=0.29 Score=49.06 Aligned_cols=43 Identities=26% Similarity=0.192 Sum_probs=32.5
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
.+..+..++|.||+||||||++-+++.... ..+++++++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~-~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ-AAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEECCC
Confidence 556789999999999999998887776543 2456677776543
No 308
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.51 E-value=0.26 Score=51.07 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=26.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~l 106 (584)
.+.+++|.|+||||||+.+..++... ...+..+|++=|-...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~-~~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTG-LLRGDRMVIVDPNGDM 93 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHH-HHTTCEEEEEEETTHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCch
Confidence 35679999999999997765444433 2234555555444333
No 309
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.46 E-value=0.75 Score=45.34 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=17.3
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l 86 (584)
++-|.||+||||||++-.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999886554
No 310
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.46 E-value=0.48 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+.++++.||+|+|||+++-.+..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999987765543
No 311
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.35 E-value=0.37 Score=49.11 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=28.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
.+.+++|.|+||||||+++-.++... ...+.+++++=|..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YMQGSRVIIIDPER 73 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEESSC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HHCCCEEEEEeCCc
Confidence 57789999999999998886665544 33455566655544
No 312
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=88.35 E-value=0.35 Score=47.91 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
...+.+..++..+..+++.||+|+|||+++-.+..
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHH
Confidence 34455666777788999999999999977765543
No 313
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.32 E-value=0.33 Score=45.89 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
....+++.|+.||||||++-.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999988765443
No 314
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.30 E-value=0.18 Score=44.86 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=18.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+.+.|+|++||||||++-.++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999988766543
No 315
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.28 E-value=0.25 Score=60.09 Aligned_cols=48 Identities=23% Similarity=0.132 Sum_probs=37.6
Q ss_pred HHHH--HHHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 56 TAIL--YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 56 ~~il--~~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
++++ -.+..+.++++.||+|||||+++-+++.+... .+.++++++-..
T Consensus 1070 d~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k-~Ge~~~Fit~ee 1119 (2050)
T 3cmu_A 1070 DIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEH 1119 (2050)
T ss_dssp HHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTS
T ss_pred HHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEccc
Confidence 4455 36778999999999999999999988887753 466778887554
No 316
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.15 E-value=0.36 Score=47.71 Aligned_cols=29 Identities=31% Similarity=0.302 Sum_probs=24.3
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+..+..++|.|++|+|||+++-+++...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44567899999999999998888887753
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.07 E-value=0.32 Score=43.66 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+..++++|+.||||||+.-.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999888765443
No 318
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.04 E-value=0.32 Score=43.07 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+.++|+.||||||++..++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999998876654
No 319
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.88 E-value=0.27 Score=44.79 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..++|+|+.||||||++-.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999988766543
No 320
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=87.87 E-value=1.6 Score=44.31 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=23.1
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEE
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v 100 (584)
..+-.+++.|++|+|||+++ ..+........++.+.+
T Consensus 158 ~~~~~vli~Ge~GtGK~~lA-r~ih~~s~r~~~~fv~v 194 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVA-RLIHKLSDRSKEPFVAL 194 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHH-HHHHHHSTTTTSCEEEE
T ss_pred CCCCCeEEecCCCcCHHHHH-HHHHHhcCCCCCCeEEE
Confidence 34556899999999999644 44444433333444433
No 321
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.85 E-value=0.42 Score=46.42 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...++++||.||||||++-.+...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999998876544
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.85 E-value=0.29 Score=48.22 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=20.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..+.++.|.||+||||||++-.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHH
Confidence 4556789999999999999886554
No 323
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=87.83 E-value=0.4 Score=47.70 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=19.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+.+++.||+|+||||++-.+...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999888765543
No 324
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.82 E-value=0.31 Score=48.02 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=18.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..++|+||||||||++.-.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999877655443
No 325
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=87.77 E-value=0.34 Score=43.23 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
-..++++|+.||||||++..++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 357899999999999998876654
No 326
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.76 E-value=0.29 Score=48.62 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=18.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++|+||||||||++.-.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47899999999999877655443
No 327
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.71 E-value=0.33 Score=47.53 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=20.6
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+..+++.||+|+|||+++-.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45678999999999999877655544
No 328
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.70 E-value=0.23 Score=45.44 Aligned_cols=24 Identities=33% Similarity=0.220 Sum_probs=19.7
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
..+..+.|+|++||||||++-.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 446678999999999999887654
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.66 E-value=0.38 Score=42.26 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
++++|.|+.||||||+.-.+...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999988765543
No 330
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=87.63 E-value=0.34 Score=45.76 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...++|.||.||||||++-.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998766543
No 331
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.61 E-value=0.46 Score=56.45 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+..|+.+.|+||+||||||++-.++..
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 356889999999999999998766543
No 332
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.61 E-value=0.27 Score=46.47 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.6
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
.. +.+.|.||+||||||++-.+.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHh
Confidence 45 789999999999999987654
No 333
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.53 E-value=0.31 Score=43.70 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.++|.|+.||||||++-.+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998766543
No 334
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.48 E-value=0.44 Score=44.59 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+..+++.|+.||||||++..+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999988765544
No 335
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.46 E-value=0.35 Score=44.81 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...+.|.|++||||||++-.+...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999988766543
No 336
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.37 E-value=0.36 Score=44.41 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.++|.|+.||||||++-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987765443
No 337
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.37 E-value=0.27 Score=49.34 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..+..+.|.||+||||||++-.+.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHHHHh
Confidence 3568899999999999999987654
No 338
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.28 E-value=0.39 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.++|.|+.||||||++-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999987765443
No 339
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.20 E-value=0.32 Score=43.33 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=19.0
Q ss_pred cCCEEEEEcCCCChHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l 86 (584)
.+..+++.|+.||||||++-.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46688999999999998876554
No 340
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.14 E-value=0.35 Score=43.85 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+++.|+.||||||++-.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58899999999999988665443
No 341
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.13 E-value=0.33 Score=43.60 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...+++.|++||||||+.-.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999998765543
No 342
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.11 E-value=0.27 Score=47.84 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.6
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
..++.+.|.||+||||||++-.+.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 568899999999999999987654
No 343
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.05 E-value=0.15 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+.+++.||+|||||+++-.+...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 44999999999999888765543
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.04 E-value=0.34 Score=44.26 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+..+++.|+.||||||++-.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999988765543
No 345
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.04 E-value=0.42 Score=47.97 Aligned_cols=42 Identities=24% Similarity=0.166 Sum_probs=32.1
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.+..+++++|.|++|+|||+++-+++.... ..+.+++++...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~-~~g~~vlyid~E 100 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAE 100 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 356789999999999999998888776543 234567777764
No 346
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.92 E-value=0.3 Score=48.95 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..+..+.|.||+||||||++-.+.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999999999987654
No 347
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.89 E-value=0.31 Score=49.25 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.9
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
..+..+.+.||+||||||++-.+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHHHHH
Confidence 568899999999999999987654
No 348
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.88 E-value=0.64 Score=46.73 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
....+++.||+|+|||+++-.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999977655443
No 349
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.87 E-value=0.66 Score=43.95 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=19.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+.+++.||+|+|||+++-.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999887655443
No 350
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.76 E-value=0.43 Score=47.10 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=19.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
++++|+|+.||||||++-.++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 47899999999999999776643
No 351
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.73 E-value=0.5 Score=49.76 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCChHHHHHHHH
Q 007931 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 53 ~~~~~il~~l~~~~~viv~a~TGsGKT~~ip~~ 85 (584)
...+.++.++..+..+++.||+|+|||+++-.+
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraL 61 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRL 61 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHG
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHHHHH
Confidence 344566777788899999999999999666544
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.63 E-value=0.48 Score=43.80 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+..+++.|+.||||||+.-.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999987665443
No 353
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=86.63 E-value=0.32 Score=45.91 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=20.6
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..+.++-|.||.||||||++-.+.-
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999998875543
No 354
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.57 E-value=0.33 Score=48.77 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
..+..+.+.||+||||||++-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHH
Confidence 568899999999999999987654
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.53 E-value=0.39 Score=44.00 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.1
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+..++++|+.||||||++-.+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999998766543
No 356
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.52 E-value=0.38 Score=43.08 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+..+++.|+.||||||++-.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999988765443
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.44 E-value=0.38 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
...+++.|+.||||||+.-.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999988765443
No 358
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.40 E-value=0.48 Score=43.07 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=19.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
..+++.|+.||||||+.-.+....
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999987665443
No 359
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.38 E-value=0.34 Score=49.19 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=17.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..++|+||||||||+++-.+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4689999999999987765543
No 360
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.31 E-value=0.35 Score=48.62 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
..++.+.+.||+||||||++-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHHHHh
Confidence 568899999999999999987654
No 361
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.19 E-value=0.8 Score=48.19 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=19.9
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..+++|.|+||||||+.+-.++.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999977655543
No 362
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.15 E-value=0.34 Score=46.41 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=20.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+. ++.+.|.||+||||||++-.+.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHT
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHh
Confidence 45 7889999999999999987654
No 363
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.14 E-value=0.42 Score=43.03 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+++.|+.||||||++-.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999876543
No 364
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.13 E-value=0.42 Score=43.70 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..+++.|+.||||||++-.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999998876654
No 365
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.13 E-value=0.61 Score=56.04 Aligned_cols=56 Identities=25% Similarity=0.256 Sum_probs=41.9
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcce
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg 124 (584)
-.++++.|.||.||||||++..++.+.. ..++.++++..+-++... +++.+|+++.
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~-~~g~~~~~i~~e~~~~~~-----~~~~~Gv~~~ 1484 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPI-----YARKLGVDID 1484 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEECTTSCCCHH-----HHHHTTCCGG
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEecCCCCCHH-----HHHHcCCCHH
Confidence 3568999999999999999988887653 356778888887665543 2566776654
No 366
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.07 E-value=0.31 Score=48.75 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.+.||+||||||++-.+.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCccHHHHHHHHH
Confidence 3568899999999999999987654
No 367
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.05 E-value=0.23 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.++|.|+.||||||++-.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999766543
No 368
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.96 E-value=0.32 Score=45.47 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~ 85 (584)
.+..+.|.|+.||||||++-.+
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999988654
No 369
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=85.91 E-value=0.35 Score=49.13 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHHHHh
Confidence 4578999999999999999987554
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.82 E-value=0.43 Score=42.73 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=18.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+++.|+.||||||+.-.+...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988766543
No 371
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=85.80 E-value=0.38 Score=48.53 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred ECCCCEEEEECCCCChHHHHHHHHH
Confidence 3578899999999999999987654
No 372
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.72 E-value=0.45 Score=48.00 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=17.4
Q ss_pred CEEEEEcCCCChHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l 86 (584)
...+|+|||||||||++-.+.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 378899999999999886543
No 373
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.70 E-value=0.52 Score=42.78 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=18.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+++.|+.||||||+.-.+...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998766543
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=85.68 E-value=0.49 Score=44.92 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=21.1
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+.++.|.||+||||||++-.+...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999988766543
No 375
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.64 E-value=0.43 Score=42.01 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+++.|+.||||||+.-.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999988766543
No 376
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=85.59 E-value=0.63 Score=41.60 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHH
Q 007931 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE 118 (584)
Q Consensus 68 viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~ 118 (584)
++|.|++|||||+.+.++... +.+++|+..-... ..+..+|++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~-d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQIL-DDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC-------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCC-CHHHHHHHHHH
Confidence 689999999999888887643 3456787764432 22444455543
No 377
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=85.59 E-value=0.38 Score=48.57 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHH
Confidence 3578899999999999999987654
No 378
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.57 E-value=0.4 Score=48.13 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 35789999999999999999865543
No 379
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.43 E-value=0.21 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+.+++.||+||||||++-.+...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 34899999999999888665543
No 380
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.41 E-value=0.43 Score=43.85 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..+..+++.|+.||||||++-.+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 55678899999999999998876543
No 381
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.15 E-value=0.59 Score=44.34 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+..++|.|+.||||||+.-.+...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999988766543
No 382
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.14 E-value=0.48 Score=43.59 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+++.|+.||||||++-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987665433
No 383
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.10 E-value=0.46 Score=43.29 Aligned_cols=22 Identities=36% Similarity=0.203 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..+.|.|++||||||++-.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999998876554
No 384
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.10 E-value=0.48 Score=42.50 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+++.|+.||||||+.-.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998876544
No 385
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.08 E-value=0.51 Score=43.82 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++.|+.||||||++-.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998766543
No 386
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=84.97 E-value=2.2 Score=46.62 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=39.6
Q ss_pred HHHHHhcCC-EEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 007931 58 ILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (584)
Q Consensus 58 il~~l~~~~-~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~ 120 (584)
+.+.+..+. ..++.|.||||||+.+...+... +.++++++|...+|++ +...+...++
T Consensus 20 l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~----~~~~lvv~~~~~~A~q-l~~el~~~~~ 78 (664)
T 1c4o_A 20 LVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQ-LAAEFRELFP 78 (664)
T ss_dssp HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHH-HHHHHHHHCT
T ss_pred HHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecCHHHHHH-HHHHHHHHCC
Confidence 344555553 56788999999998777655443 3468999999888775 4455555554
No 387
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.95 E-value=0.51 Score=41.27 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+++.|+.||||||+.-.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999998876544
No 388
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=84.75 E-value=0.83 Score=46.72 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=19.6
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
....+.+.||+|+||||++-.+.-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 334899999999999999876653
No 389
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.72 E-value=0.57 Score=41.75 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=18.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..++++|+.||||||+.-.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999888766543
No 390
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=84.70 E-value=0.5 Score=45.06 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
...++++|+.||||||++-.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999998876544
No 391
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=84.69 E-value=0.31 Score=48.89 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..+..+.+.||+||||||++-.+.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHh
Confidence 3568899999999999999987654
No 392
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.65 E-value=0.55 Score=42.96 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=17.4
Q ss_pred CCEEEEEcCCCChHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~ 85 (584)
....+|.||+|||||+++-.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHH
Confidence 357899999999999887644
No 393
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.63 E-value=0.64 Score=49.39 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=30.7
Q ss_pred HHhcCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCc
Q 007931 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (584)
Q Consensus 61 ~l~~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~ 103 (584)
.+..+.+++|.||+||||||++-+++..... .+.++++++..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~e 318 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAYE 318 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 4567889999999999999998877654432 34456666543
No 394
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.61 E-value=0.28 Score=48.20 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+..+..+++.||+|+|||+++-++...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 445677899999999999888877665
No 395
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=84.56 E-value=0.51 Score=41.97 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=15.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...+++.|+.||||||+.-.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999998766443
No 396
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.56 E-value=0.47 Score=50.59 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=35.9
Q ss_pred CCCCccchhhHHHHhcCCCchHHHHHHHH--------HHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 32 ASSIGYGYASIEKQRQRLPVYKYRTAILY--------LVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 32 l~~~~~~~~~l~~~~~~lP~~~~~~~il~--------~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+|.....++.+.....|.+....++.. .+..+.++++.|+.||||||++-.+..
T Consensus 328 ~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 328 LTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp ECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHH
Confidence 44555556666666666664433222332 234678999999999999988765543
No 397
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=84.53 E-value=5.4 Score=35.45 Aligned_cols=120 Identities=15% Similarity=0.222 Sum_probs=63.0
Q ss_pred HHHHHHHHHH--hcCCEEEEEcCCCChHHHH-HHHHHHhcCccCCCeEEEEeCchHHHHHHHHHHHHHHhCCcceeEEee
Q 007931 53 KYRTAILYLV--ETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (584)
Q Consensus 53 ~~~~~il~~l--~~~~~viv~a~TGsGKT~~-ip~~l~~~~~~~~~~~I~v~~~r~la~~~~~~~~~~~~~~~vg~~vg~ 129 (584)
.-+.+....+ ...++.+|.|+-|++|+.. +..+ .......+..+.+++|..+- .+.+.+ .++.
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L-~~~a~~~Gr~V~vLAp~~~s-~~~l~~--------~~~l---- 102 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAEL-VMMAREQGREVQIIAADRRS-QMNMKQ--------DERL---- 102 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHH-HHHHHHTTCCEEEECSTTHH-HHHHSC--------TTTC----
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHH-HHHHHhcCeEEEEEcCchHH-HHHHHh--------hcCc----
Confidence 3344444554 4567999999999999954 3332 32333355566777776533 222222 1110
Q ss_pred EeeccCcCCCCCceEEEechHHHHHHHccCCCCCCCcEEEEeCCCcCccchhHHHHHHHHHHHhcCCceEEEEeccc
Q 007931 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (584)
Q Consensus 130 ~~~~~~~~~~~~~~I~~~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l~~~l~~~~~~~~~~~vi~~SAT~ 206 (584)
..+++ |-.. .+..+..+..=+++||||+-. +...-+..++....+ .+.|+|++--+-
T Consensus 103 -----------~~~t~--t~~~---ll~~~~~~tp~s~lIVD~Aek--LS~kE~~~Lld~A~~--~naqvvll~~~~ 159 (189)
T 2l8b_A 103 -----------SGELI--TGRR---QLLEGMAFTPGSTVIVDQGEK--LSLKETLTLLDGAAR--HNVQVLITDSGQ 159 (189)
T ss_dssp -----------SSCSS--STTT---TTTTSCCCCCCCEEEEEESSS--HHHHHHHHHHHHHHH--TTCCEEEEESST
T ss_pred -----------Cccee--ehhh---hhcCCCCCCCCCEEEEechhh--cCHHHHHHHHHHHHh--cCCEEEEeCCcc
Confidence 01111 1111 111222245667999999983 333344555555443 458888876553
No 398
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=84.52 E-value=0.6 Score=41.29 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.++|.|+.||||||+.-.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999888766543
No 399
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.45 E-value=0.93 Score=45.47 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...+++.||+|+|||+++-.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999887665543
No 400
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=84.35 E-value=0.5 Score=47.74 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l 86 (584)
....+|+||||+|||+++-.+.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999998886554
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.29 E-value=0.71 Score=43.10 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
...+++.|+.||||||++-.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999987665443
No 402
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=84.26 E-value=0.55 Score=42.81 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=16.9
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l 86 (584)
++.+.|+.||||||+.-.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999887653
No 403
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=84.20 E-value=0.74 Score=42.44 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+..+++.|+.||||||+.-.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999987665443
No 404
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.16 E-value=0.58 Score=47.28 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+++.||+||||||++-.+..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35678999999999999998876654
No 405
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=84.15 E-value=1.1 Score=52.51 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=65.4
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCC-CCccccccCC
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-IAETSLTLEG 353 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~-i~e~Gidip~ 353 (584)
.+.+++|.+|++.-+++.++.+.+.+.. .++.+..+++..+..++..+++...+|..+|+|+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 4568999999999999999988877532 257789999999999998888888889999999995 4556688888
Q ss_pred eEEEE
Q 007931 354 IVYVV 358 (584)
Q Consensus 354 v~~VI 358 (584)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 88876
No 406
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=84.07 E-value=0.59 Score=42.49 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.4
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+.|.|+.||||||+.-.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999988865543
No 407
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.98 E-value=0.55 Score=42.89 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=16.7
Q ss_pred CEEEEEcCCCChHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~ 85 (584)
+.+++.||.|+|||+.+-.+
T Consensus 59 n~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999777544
No 408
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.67 E-value=1.1 Score=41.17 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.4
Q ss_pred cCCEEEEEcCCCChHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l 86 (584)
.+..+++.|+.||||||++-.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVV 24 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999987554
No 409
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.67 E-value=0.53 Score=43.36 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l 86 (584)
+.++.|.|+.||||||++-.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999887653
No 410
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=83.62 E-value=0.93 Score=41.30 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
..+++|+.|||||+.+-.++...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999998766555443
No 411
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=83.59 E-value=0.6 Score=45.41 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=17.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..+.|+|++||||||++-.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3478899999999998875443
No 412
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=83.55 E-value=2 Score=43.17 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=18.3
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.....+++.|++|+||+.++- ++..
T Consensus 150 ~~~~~vli~GesGtGKe~lAr-~ih~ 174 (368)
T 3dzd_A 150 KSKAPVLITGESGTGKEIVAR-LIHR 174 (368)
T ss_dssp TSCSCEEEECCTTSSHHHHHH-HHHH
T ss_pred ccchhheEEeCCCchHHHHHH-HHHH
Confidence 455679999999999995544 4443
No 413
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=83.46 E-value=1.6 Score=42.70 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=20.2
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+..+.|.||+||||||++-.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999998876544
No 414
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=83.40 E-value=1.7 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=18.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+-+++.||.|||||.++-.+..+.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 458999999999996665554443
No 415
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.26 E-value=0.57 Score=44.67 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=32.7
Q ss_pred ccccCCCCCCccchhhHHHHhcCCCchHHHHHHHHHH--hcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLV--ETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 26 ~~~~~~l~~~~~~~~~l~~~~~~lP~~~~~~~il~~l--~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+.+|+++.-.+.....+.+.-.. ..+ .+.+..+ .....+++.||+|+|||+++-.+...
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDF---LKY-PERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHH---HHC-HHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH---HHC-hHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 34577776666555555443211 111 1112221 22455899999999999877655443
No 416
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=82.98 E-value=0.69 Score=41.83 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=18.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.++.|+|++||||||+.-.+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999988876543
No 417
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.98 E-value=1.1 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
+.+++.||+|+|||+++-.+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999998776655443
No 418
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.81 E-value=0.74 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=18.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhc
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
..+++.||+|+|||+++-.+....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999997776554443
No 419
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=82.74 E-value=1.4 Score=40.39 Aligned_cols=37 Identities=32% Similarity=0.365 Sum_probs=24.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
..+++.|+-|||||||+-.+.... ..+..++..-.|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L--~~~~~v~~~~eP~ 39 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL--VKDYDVIMTREPG 39 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH--TTTSCEEEEESST
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH--HCCCCEEEeeCCC
Confidence 468899999999999987554322 2344555555553
No 420
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.74 E-value=0.6 Score=43.54 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=18.1
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..+..+++.|+.||||||++-.+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999876543
No 421
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=82.62 E-value=0.48 Score=51.04 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=20.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.++||+||||||++-.+.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHh
Confidence 3578899999999999999886443
No 422
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=82.53 E-value=1.3 Score=45.26 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCCCc----ccc
Q 007931 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAE----TSL 349 (584)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i~e----~Gi 349 (584)
..++.+||.+|++.-+.+.++.+.+... .++.+..+||+.+..++....+.+..|..+|+|+|.-.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 4567899999999999999999888531 477899999999997776666666677789999996211 124
Q ss_pred ccCCeEEEE
Q 007931 350 TLEGIVYVV 358 (584)
Q Consensus 350 dip~v~~VI 358 (584)
+..++++||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 555777766
No 423
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=82.15 E-value=0.47 Score=43.17 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=18.4
Q ss_pred hcCCEEEEEcCCCChHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~ 85 (584)
..+..+++.|++|+||||++-.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 34567999999999999887543
No 424
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=82.08 E-value=1.4 Score=41.33 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..+++.|+.||||||++..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999876543
No 425
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=81.98 E-value=0.77 Score=42.34 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=26.1
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
.+..+++.|+.||||||++-.+..... ..+..++..-.|.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~v~~~~~p~ 44 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR-ERGIEVQLTREPG 44 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEESSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcccccCCC
Confidence 467899999999999999876543221 2233444444443
No 426
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=81.96 E-value=0.53 Score=44.65 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...+++.|++||||||++-.+...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999988766543
No 427
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=81.89 E-value=0.65 Score=48.35 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=24.0
Q ss_pred HHHHHhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 58 ILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 58 il~~l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+--.+..++.+.|.||+||||||++-.+.-
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 444566889999999999999998876543
No 428
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=81.76 E-value=0.76 Score=44.12 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=18.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
++.+.||+|+||||++-.+.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999998766543
No 429
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=81.67 E-value=0.92 Score=41.93 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+..+++.|+.||||||++..+....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999998765543
No 430
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=81.52 E-value=0.8 Score=45.59 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=17.6
Q ss_pred CCEEEEEcCCCChHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQY 85 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~ 85 (584)
....+|+||+|||||+++-.+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 357899999999999888743
No 431
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=81.48 E-value=0.77 Score=44.18 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=18.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+-+++.||+|||||+++-.+...
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 44999999999999888765544
No 432
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=81.30 E-value=1.3 Score=40.31 Aligned_cols=36 Identities=33% Similarity=0.351 Sum_probs=23.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCccCCCeEEEEeCch
Q 007931 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (584)
Q Consensus 68 viv~a~TGsGKT~~ip~~l~~~~~~~~~~~I~v~~~r 104 (584)
+++.|.-|||||||+-.+.- .....+.+++..-.|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~-~L~~~g~~v~~treP~ 38 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQ-YLEKRGKKVILKREPG 38 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH-HHHHTTCCEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHHCCCcEEEEECCC
Confidence 67889999999999875532 2222344555555553
No 433
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=81.18 E-value=1.5 Score=42.79 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..+..+.+.||+|+||||++-.+.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH
Confidence 3457889999999999999998776
No 434
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=81.16 E-value=0.6 Score=50.33 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.4
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.++||+||||||++-.+.
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999987654
No 435
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=81.15 E-value=0.81 Score=46.06 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=22.3
Q ss_pred HHhc--CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 61 LVET--HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 61 ~l~~--~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+.. ++.+.|.||+||||||++-.+.-.
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456 778999999999999998766543
No 436
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.09 E-value=1.2 Score=46.48 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=22.5
Q ss_pred HHHHHH--hcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 57 AILYLV--ETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 57 ~il~~l--~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+++.+ ....++++.||+|+|||+++-.+..
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 345555 3456899999999999987765543
No 437
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=80.93 E-value=1 Score=44.81 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.0
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+..+.+.|++|+||||++-.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999886654
No 438
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=80.87 E-value=0.6 Score=50.38 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.0
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.++||+||||||++-.+.
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999886543
No 439
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=80.34 E-value=1.3 Score=44.21 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
...+..+.+.||+|+||||++-.++-
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhc
Confidence 34678999999999999999876653
No 440
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=80.33 E-value=0.96 Score=43.93 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=18.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+++.|+.||||||++-.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998876654
No 441
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=80.03 E-value=1.3 Score=41.44 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=19.6
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..-++.|.||+||||||+.-.+...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999988766543
No 442
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=79.91 E-value=0.58 Score=50.61 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.++||+||||||++-.+.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4578999999999999999987554
No 443
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.69 E-value=5.5 Score=35.75 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=53.3
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCC-----Cc-cc
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI-----AE-TS 348 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i-----~e-~G 348 (584)
...++||.+|++.-+++.++.+.+... ..++..+..++|+.+..++...+. +..+|+|+|.- +. ..
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSK----HMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTT----TSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHh----hcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCC
Confidence 446799999999999998888877643 223677889999988766554432 35689999961 22 23
Q ss_pred cccCCeEEEE
Q 007931 349 LTLEGIVYVV 358 (584)
Q Consensus 349 idip~v~~VI 358 (584)
+++.++++||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4566777765
No 444
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=79.45 E-value=1.1 Score=40.59 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=17.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
-++.|+|+.||||||+.-.+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999988876544
No 445
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=79.36 E-value=0.83 Score=46.84 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=22.7
Q ss_pred HHHHHhcCCE--EEEEcCCCChHHHHHHHHH
Q 007931 58 ILYLVETHAT--TIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 58 il~~l~~~~~--viv~a~TGsGKT~~ip~~l 86 (584)
+--.+..+.. +.|.||+|+||||++-.+.
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 4445677888 9999999999999987654
No 446
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=79.24 E-value=1.1 Score=45.07 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
...+++.||+|+|||+++-.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999977765543
No 447
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=79.21 E-value=1.1 Score=38.30 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++.|++|+|||+++-.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999998877643
No 448
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=78.89 E-value=1.1 Score=40.20 Aligned_cols=22 Identities=18% Similarity=0.724 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++.|++|+||||++-.+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999998877654
No 449
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=78.84 E-value=1.1 Score=40.34 Aligned_cols=22 Identities=18% Similarity=0.724 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++.|++|+||||++-.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999998877653
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=78.77 E-value=0.98 Score=48.06 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++.+.|.||+||||||++-.+.-
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999876653
No 451
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=78.36 E-value=0.65 Score=50.19 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.++||+||||||++-.+.
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999987654
No 452
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=78.17 E-value=1 Score=44.48 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.0
Q ss_pred CEEEEEcCCCChHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l 86 (584)
...+|+||+|||||+++-.+.
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 489999999999998887554
No 453
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=78.12 E-value=2.1 Score=44.52 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=18.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+.+++.||+|+|||+++-.+...
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 57999999999999777655444
No 454
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=77.90 E-value=1.3 Score=38.23 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++.|++|+|||+++-.+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999998877643
No 455
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=77.86 E-value=1.8 Score=43.25 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...+.|.|++|+||||++-.++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999877653
No 456
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=77.76 E-value=1.3 Score=37.83 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++.|++|+|||+++-.++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999998777644
No 457
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=77.65 E-value=1.4 Score=39.97 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
++.|.|+.||||||+.-.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999988876544
No 458
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=77.63 E-value=1.4 Score=39.23 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.-.+++.|++|+|||+++-.+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999998877654
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=77.44 E-value=1 Score=42.90 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCChHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l 86 (584)
....+++.|+.||||||++-.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999986543
No 460
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=77.42 E-value=13 Score=43.62 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHHHHHHHHh----cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 53 KYRTAILYLVE----THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 53 ~~~~~il~~l~----~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...+++.+.+. ..+.+.|+|+-|.|||+++-++...
T Consensus 131 ~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 131 KLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp HHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 33455666662 3457889999999999888766543
No 461
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=77.36 E-value=1.1 Score=44.65 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=23.6
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 60 YLVETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 60 ~~l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
-.+..++.+.|.||.|+||||++-.++-.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999997766544
No 462
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=77.30 E-value=1.3 Score=41.85 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
++.|.|+.||||||+.-.+..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999988775544
No 463
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=77.28 E-value=3 Score=46.13 Aligned_cols=62 Identities=18% Similarity=0.336 Sum_probs=37.4
Q ss_pred cccCCCCCCccchhhHHH--HhcCCC--chHHHHHHHHHH---hcCCEEEEEcCCCChHHH---HHHHHHHh
Q 007931 27 SSLSSASSIGYGYASIEK--QRQRLP--VYKYRTAILYLV---ETHATTIIVGETGSGKTT---QIPQYLKE 88 (584)
Q Consensus 27 ~~~~~l~~~~~~~~~l~~--~~~~lP--~~~~~~~il~~l---~~~~~viv~a~TGsGKT~---~ip~~l~~ 88 (584)
+.|..+|+-+..+...-. .+..+| +|+..+.....+ .++|.+||+|+.|+|||. .+-+++..
T Consensus 126 NPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla~ 197 (783)
T 4db1_A 126 NPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAV 197 (783)
T ss_dssp CCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhhhh
Confidence 346777654443322221 234565 566666666665 357899999999999993 34455543
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=77.27 E-value=1.3 Score=41.54 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+..+++.|+.||||||++-.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999998766543
No 465
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=76.85 E-value=4.6 Score=37.42 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=45.9
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCC-----CCcc-c
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-----IAET-S 348 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~-----i~e~-G 348 (584)
.+..+||.+|+++-+.++++.+.+... ..+..+..++|+....++. +....+..+|+|+|. .+.. .
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~---~~l~~~~~~Ilv~Tp~~l~~~l~~~~ 168 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGD-----YMGATCHACIGGTNVRNEM---QKLQAEAPHIVVGTPGRVFDMLNRRY 168 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT-----TTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhh-----hcCceEEEEECCCchHHHH---HHHhcCCCCEEEECHHHHHHHHHhCC
Confidence 456899999999999999988887642 2256677788886644332 334456678999994 2222 3
Q ss_pred cccCCeEEEE
Q 007931 349 LTLEGIVYVV 358 (584)
Q Consensus 349 idip~v~~VI 358 (584)
++..++++||
T Consensus 169 ~~~~~~~~lV 178 (237)
T 3bor_A 169 LSPKWIKMFV 178 (237)
T ss_dssp SCSTTCCEEE
T ss_pred cCcccCcEEE
Confidence 5566777765
No 466
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=76.84 E-value=1.3 Score=42.73 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.0
Q ss_pred CEEEEEcCCCChHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l 86 (584)
..+.|+|+.||||||+.-.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999887665
No 467
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=76.80 E-value=6.7 Score=36.08 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=54.3
Q ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCCC-C-----cc
Q 007931 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI-A-----ET 347 (584)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~i-~-----e~ 347 (584)
.....+||.+|+++-+++.++.+.+... ..++..+..++|+.+..++...+. ..+|+|+|.- + ..
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~ 160 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGI----KMEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELD 160 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTT----TSTTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhc----ccCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcC
Confidence 3456899999999999999988877632 223678899999999877766553 3679999962 1 22
Q ss_pred ccccCCeEEEE
Q 007931 348 SLTLEGIVYVV 358 (584)
Q Consensus 348 Gidip~v~~VI 358 (584)
.++..++++||
T Consensus 161 ~~~~~~~~~lV 171 (230)
T 2oxc_A 161 YLNPGSIRLFI 171 (230)
T ss_dssp SSCGGGCCEEE
T ss_pred CcccccCCEEE
Confidence 34556665554
No 468
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=76.69 E-value=1.5 Score=38.16 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=17.6
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l 86 (584)
.+++.|++|+|||+++-.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999988775
No 469
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=76.67 E-value=1.6 Score=38.23 Aligned_cols=23 Identities=35% Similarity=0.784 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+++.|++|+|||+++-.++...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999988776543
No 470
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=76.61 E-value=1.6 Score=40.02 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHhc
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.-..++++|++|+||||++-.++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34579999999999999998877654
No 471
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=76.58 E-value=0.94 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.6
Q ss_pred hcCCEEEEEcCCCChHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIP 83 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip 83 (584)
..++.+.|.||+||||||++-
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHT
T ss_pred cCCCEEEEEeeCCCCHHHHHH
Confidence 468899999999999998873
No 472
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=76.32 E-value=1.8 Score=42.12 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.1
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
..+..+.+.||+|+||||++-.+.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHS
T ss_pred hcCCeEEEECCCCCcHHHHHHHhc
Confidence 357889999999999999887554
No 473
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.30 E-value=1.6 Score=43.31 Aligned_cols=24 Identities=21% Similarity=0.464 Sum_probs=18.6
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
....+++.||+|+|||+++-.+..
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 345699999999999977765544
No 474
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=76.24 E-value=1.6 Score=44.86 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
...++++|+.||||||++-.+..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998876654
No 475
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=76.18 E-value=1.7 Score=37.54 Aligned_cols=23 Identities=22% Similarity=0.621 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+++.|++|+|||+++-.++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999988776543
No 476
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=76.17 E-value=1.6 Score=37.53 Aligned_cols=23 Identities=17% Similarity=0.546 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhc
Q 007931 67 TTIIVGETGSGKTTQIPQYLKEA 89 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~~ 89 (584)
.+++.|++|+|||+++-.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999988776543
No 477
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=76.05 E-value=1.7 Score=37.25 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++.|++|+|||+++-.++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999998776643
No 478
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=75.94 E-value=1.5 Score=40.61 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=19.4
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..+++.|+.||||||++-.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999876543
No 479
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=75.87 E-value=1.7 Score=37.30 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++.|++|+|||+++-.+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999998877644
No 480
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=75.71 E-value=2.7 Score=44.66 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 64 THATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
+..+++|.|.||||||+.+-.++..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999776555443
No 481
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=75.69 E-value=1.5 Score=37.80 Aligned_cols=22 Identities=18% Similarity=0.714 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++.|++|+|||+++-.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999998877643
No 482
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=75.69 E-value=1.3 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=18.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 007931 66 ATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..+.|.||+||||||++-.+.-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999876653
No 483
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=75.66 E-value=1.8 Score=40.31 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=19.4
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+..+.|.|+.||||||+.-.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999988876544
No 484
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=75.55 E-value=1.6 Score=37.62 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=18.0
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+++.|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999998877664
No 485
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=75.50 E-value=1.4 Score=45.50 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=23.5
Q ss_pred HHHhcCCEEEEEcCCCChHHHHHHHHHHh
Q 007931 60 YLVETHATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 60 ~~l~~~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
-.+..++.+.|.||.||||||++-.+.-.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44567899999999999999997665544
No 486
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=75.49 E-value=2.4 Score=43.63 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=18.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+++.||+|+|||+++-.+...
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999877655443
No 487
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=75.49 E-value=1.4 Score=47.60 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
+..++++.|.||+||||||++-.+.-
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhc
Confidence 46799999999999999999876653
No 488
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=75.48 E-value=1.7 Score=44.68 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=19.9
Q ss_pred cCCEEEEEcCCCChHHHHHHHHHH
Q 007931 64 THATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 64 ~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+.+++|.||+|||||+++-.+..
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 468899999999999988875543
No 489
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=75.31 E-value=1.4 Score=46.94 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..++.+.|.||+||||||++-.+.-
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999876653
No 490
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=75.25 E-value=1.4 Score=47.65 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCChHHHHHHHHHH
Q 007931 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 63 ~~~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
..++.+.|.||+||||||++-.+.-
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999876653
No 491
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=75.21 E-value=1.3 Score=47.03 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++++.|.||+||||||++-.+.
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3568899999999999999987654
No 492
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=75.19 E-value=1.6 Score=38.93 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 007931 65 HATTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~ 87 (584)
...+++.|++|+|||+++-.++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34699999999999999877653
No 493
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=75.17 E-value=1.5 Score=39.01 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=19.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHh
Q 007931 66 ATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 66 ~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
..+++.|++|+|||+++-.++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999998877543
No 494
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=75.15 E-value=2.1 Score=37.33 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHh
Q 007931 65 HATTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 65 ~~~viv~a~TGsGKT~~ip~~l~~ 88 (584)
...+++.|++|+|||+++-.+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999998877643
No 495
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=75.11 E-value=3.9 Score=38.05 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=54.6
Q ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhcccCCCCCCCcEEEEeCC-----CCc-cc
Q 007931 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-----IAE-TS 348 (584)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~~vlvaT~-----i~e-~G 348 (584)
.+..+||.+|+++-+.++++.+.+.... .++.+..++|+.+..++...+.. ..+|+|+|. .+. ..
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~ 171 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRA-----CRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGK 171 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTS
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhh-----cCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCC
Confidence 3567999999999999998888776532 25778889999988777655432 367999995 222 23
Q ss_pred cccCCeEEEE
Q 007931 349 LTLEGIVYVV 358 (584)
Q Consensus 349 idip~v~~VI 358 (584)
+++.++.+||
T Consensus 172 ~~~~~~~~lV 181 (242)
T 3fe2_A 172 TNLRRTTYLV 181 (242)
T ss_dssp CCCTTCCEEE
T ss_pred CCcccccEEE
Confidence 5677888766
No 496
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=75.09 E-value=1.7 Score=37.36 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=18.0
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+++.|++|+|||+++-.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999887764
No 497
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=75.06 E-value=1.8 Score=37.64 Aligned_cols=22 Identities=27% Similarity=0.718 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++.|++|+|||+++-.++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999998877643
No 498
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=74.97 E-value=1.4 Score=47.65 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCChHHHHHHHHH
Q 007931 62 VETHATTIIVGETGSGKTTQIPQYL 86 (584)
Q Consensus 62 l~~~~~viv~a~TGsGKT~~ip~~l 86 (584)
+..++.+.|.||+||||||++-.+.
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHh
Confidence 5688999999999999999987654
No 499
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=74.96 E-value=1.7 Score=37.49 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHh
Q 007931 67 TTIIVGETGSGKTTQIPQYLKE 88 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~~ 88 (584)
.+++.|++|+|||+++-.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999998777654
No 500
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=74.81 E-value=1.8 Score=38.20 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.1
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 007931 67 TTIIVGETGSGKTTQIPQYLK 87 (584)
Q Consensus 67 ~viv~a~TGsGKT~~ip~~l~ 87 (584)
.+++.|++|+|||+++-.+..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999887753
Done!