Query 007932
Match_columns 584
No_of_seqs 162 out of 2512
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 14:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 1.8E-30 6.3E-35 280.6 18.0 444 23-555 8-475 (491)
2 2xut_A Proton/peptide symporte 100.0 8.8E-30 3E-34 277.7 21.2 472 24-557 8-508 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1E-26 3.5E-31 247.8 19.0 400 26-553 26-435 (451)
4 3o7q_A L-fucose-proton symport 99.9 9.9E-25 3.4E-29 231.7 24.3 356 24-511 22-407 (438)
5 4gc0_A D-xylose-proton symport 99.9 7.7E-26 2.6E-30 244.2 9.0 418 63-571 54-482 (491)
6 2gfp_A EMRD, multidrug resista 99.9 4.3E-23 1.5E-27 214.7 8.8 167 31-225 3-169 (375)
7 2cfq_A Lactose permease; trans 99.8 1.2E-22 4.3E-27 215.0 3.1 389 28-553 7-401 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.1E-12 3.9E-17 138.9 9.2 180 27-230 251-433 (451)
9 3o7q_A L-fucose-proton symport 99.3 4.2E-12 1.4E-16 134.1 13.5 168 27-224 257-426 (438)
10 2cfq_A Lactose permease; trans 99.3 1E-11 3.4E-16 131.0 10.2 175 28-229 220-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 1.5E-10 5.1E-15 124.3 10.9 187 28-233 283-474 (491)
12 4gc0_A D-xylose-proton symport 98.9 1.2E-09 4.2E-14 117.0 8.8 182 28-232 276-464 (491)
13 2gfp_A EMRD, multidrug resista 98.8 4.7E-10 1.6E-14 115.9 0.8 165 28-218 199-364 (375)
14 2xut_A Proton/peptide symporte 98.0 1.7E-06 5.8E-11 93.3 3.0 147 66-230 337-502 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=1.8e-30 Score=280.60 Aligned_cols=444 Identities=17% Similarity=0.257 Sum_probs=289.6
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCchhhhhhHHHHHHHHHHHhhhHhHHHhhc-ccchhH
Q 007932 23 KTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQ-----LHEDTVSSVRNVNNWSGVVWITPLLGAYIADT-YIGRFW 96 (584)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Grk~ 96 (584)
.++++|.++.+....++..+++|++.++++.|++++ +|.+..+.+++.+.+.++..++++++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 345678899999999999999999999999999988 99999999999999999999999999999999 8 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhc
Q 007932 97 TFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERN 176 (584)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (584)
+++++.++.+++.++++++ ++.+.++++|++.|++.+...++..++++|.+|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~---- 142 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALP--------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR---- 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSC--------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----
T ss_pred HHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----
Confidence 9999999999999888775 4577799999999999999999999999999998742
Q ss_pred ccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeec---CCCCCChhhhhHHHHH
Q 007932 177 LKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHK---IRKTKSPARDLIRVPI 253 (584)
Q Consensus 177 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 253 (584)
+|+.++++++...++|..++|.+++++.+..||++.|++.++..+++.+..+...++...+ .++++.+..+..+...
T Consensus 143 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
T 4aps_A 143 RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV 222 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence 3778888899999999999999999999999999999998777666665554433222111 1111011111111000
Q ss_pred H--------------HHhhccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchh
Q 007932 254 A--------------AFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEG 319 (584)
Q Consensus 254 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 319 (584)
. ....+. .+.+... ...... ... ....+... .++.... ...+
T Consensus 223 ~~g~~l~~~~~~~~~~~~~~~----~~~~~~~------~~~~~~-~~~--~~~~~~~~----------~~~~~~~-~~~~ 278 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLVGW----NSLPAYI------NLLTIV-AIA--IPVFYFAW----------MISSVKV-TSTE 278 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHHSS----CCTTHHH------HHHHHH-HHH--HHHHHHHH----------HC----------
T ss_pred HHHHHHHHHHHHHHHHHhccC----cccccch------hhhhHH-HHH--HHHHHHHH----------Hhhcccc-cHHH
Confidence 0 000000 0000000 000000 000 00000000 0000000 0011
Q ss_pred hHHHHHHHHHHHHhhhhhhhhccccceEEEecc-cccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCC
Q 007932 320 TKLVLGMALIWLVTLIPSTIWAQINTLFVKQGT-TLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGN 398 (584)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~ 398 (584)
+++......++.....++..+.+....+..... ..+.. ....+.+.....+..++..++.+++.+++.||.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~--- 350 (491)
T 4aps_A 279 HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ--- 350 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC---
Confidence 222222233333344444444444332111110 01111 134566777778888888888888877766653
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccC
Q 007932 399 PRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQS 478 (584)
Q Consensus 399 ~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~ 478 (584)
......+.++.++.++++++.......... ..+.+.++.++.+++.+++.+...+..+.++.+.+
T Consensus 351 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 415 (491)
T 4aps_A 351 ---PSSPTKFAVGLMFAGLSFLLMAIPGALYGT------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA 415 (491)
T ss_dssp -----CHHHHHHHHHHHHHHHTTTHHHHHHCCC------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHHhcCC------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 134566778888888888766654311000 11245667778888999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007932 479 PEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRY 555 (584)
Q Consensus 479 P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~ 555 (584)
|++.||+++|+.++...+|+.+++.+.+.+.+ .++...|.+.+++++++.++++++.++.
T Consensus 416 p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 416 PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888765532 1334567777777777766666655443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=8.8e-30 Score=277.69 Aligned_cols=472 Identities=23% Similarity=0.380 Sum_probs=286.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHH
Q 007932 24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLH------EDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWT 97 (584)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~ 97 (584)
+.++|.++.+.+..++.++++|++.++++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3455778889999999999999999999999999999 9999999999999999999999999999995599999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcc
Q 007932 98 FTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNL 177 (584)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (584)
++++.++.+++.+++.++. .+.+.++++|++.|++.+...+...+++.|.+|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 142 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------ 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------
T ss_pred HHHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------
Confidence 9999999999988888762 157789999999999999999999999999999884
Q ss_pred cce---eeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHH
Q 007932 178 KVS---FFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIA 254 (584)
Q Consensus 178 r~~---~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (584)
|++ .+++++.+.++|..++|.+++++.+..||++.|++.++..++..+..+...++.++++|++ ++..+..+.+..
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 221 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP-KDPHGFLPVIRS 221 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC-ccchhHHHHHHH
Confidence 654 4555899999999999999999998899999999888876666555544444332222222 111111111111
Q ss_pred HHhhccccCCCCCCCccccccccc---cccccccc--------------cCCCcchh--hhHHHHhcCCCCCCCCCcccc
Q 007932 255 AFRNRKIQLPDNPSELHEFDTQDY---IRSGKRQV--------------VHSPAFRC--LDKAAIKHGNGGDSKPPCTVT 315 (584)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------------~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~ 315 (584)
..+++... +++.....+...... ........ +.....+| ++.. .+.+...
T Consensus 222 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 290 (524)
T 2xut_A 222 ALLTKVEG-KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERA----------RKSHPDA 290 (524)
T ss_dssp -----CTT-HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHS----------CCSCCSS
T ss_pred HHhhhhcc-cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhh----------hccccHh
Confidence 11111000 000000000000000 00000000 00000001 0000 0001111
Q ss_pred cchhhHHHHHHHHHHHHhhhhhhhhccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhc
Q 007932 316 QVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRR 395 (584)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~ 395 (584)
+..++++.+.....+.....++..+.+..+.+..+....+.. .+ .+.+.+...+.+..++..++.+++..+..+|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (524)
T 2xut_A 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERM 366 (524)
T ss_dssp SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc
Confidence 223344555555555555555555555544333332222211 11 24556667777788888888887754444443
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeee
Q 007932 396 TGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFY 475 (584)
Q Consensus 396 ~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~ 475 (584)
.+ +.+..+.+.+|+++.++++++.+...... +.....+.+++++.+++.+++++...+..++++.
T Consensus 367 ~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 431 (524)
T 2xut_A 367 GV---KLTALRKMGAGIAITGLSWIVVGTIQLMM------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAY 431 (524)
T ss_dssp -------CCHHHHHTHHHHHHHHHHTTTTTTTTT------------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred CC---CCChHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 12445567778887777776654431100 0011245667788889999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCC-CCCccchhHHHHHHHHHHHHHHHHHHhhhhc
Q 007932 476 DQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGD-NLNDCHLDYYYGFLMVISILNLGAFFWASSR 554 (584)
Q Consensus 476 ~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~ 554 (584)
+.+|++.||+++|+.++..++|+.+++.+.+.+.+..+ .+|..+ +.+ ...+.|++.++++++++++++++.++
T Consensus 432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988753211 123211 011 11223677777777776666655554
Q ss_pred ccc
Q 007932 555 YVY 557 (584)
Q Consensus 555 ~~~ 557 (584)
++.
T Consensus 506 ~~~ 508 (524)
T 2xut_A 506 YQM 508 (524)
T ss_dssp ---
T ss_pred hcc
Confidence 433
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=1e-26 Score=247.80 Aligned_cols=400 Identities=11% Similarity=0.002 Sum_probs=256.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932 26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY 105 (584)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~ 105 (584)
+++.++.+.+..+...+..+.+.+.++.+ .+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 34556666666777777766666666655 5567 9999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHH----hhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccccee
Q 007932 106 VLGMILLTM----AASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF 181 (584)
Q Consensus 106 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (584)
+++.+++++ + .+.+.++++|++.|++.+...+...+++.|.+|++ +|+++
T Consensus 103 ~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~ 156 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT--------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGI 156 (451)
T ss_dssp HHHHHHHHHCHHHH--------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHH
T ss_pred HHHHHHHHhhhhcc--------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHH
Confidence 999999988 5 45677999999999999999999999999999987 69999
Q ss_pred eeeehhHHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhcc
Q 007932 182 FNWWMFSSFIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRK 260 (584)
Q Consensus 182 ~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (584)
+++.+.+.++|..++|.+++++.+..| ||+.|++.++..++..++.++..++.++..... +
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------- 218 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP--P---------------- 218 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC--S----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC--C----------------
Confidence 999999999999999999999888888 999999988776665555444333211111000 0
Q ss_pred ccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHH-HHHhhhhhhh
Q 007932 261 IQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALI-WLVTLIPSTI 339 (584)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 339 (584)
.++.....+.+ .+ .. + .+...+.+.. . ......+.++..... ++....+...
T Consensus 219 ---~~~~~~~~~~~--~~--~~--~---~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (451)
T 1pw4_A 219 ---IEEYKNDYPDD--YN--EK--A---EQELTAKQIF-M--------------QYVLPNKLLWYIAIANVFVYLLRYGI 271 (451)
T ss_dssp ---CTTTCCC----------------------CCTHHH-H--------------HHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhccccccc--ch--hh--h---hcccccccch-H--------------HHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 00 00 0 0000000000 0 000011222222211 1222222222
Q ss_pred hccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhh--hhhccCCCCCCChhHHHHHHHHHHH-
Q 007932 340 WAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPF--MRRRTGNPRGITMLQRLGVGFVIQV- 416 (584)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~i~ig~~l~~- 416 (584)
....+.++ .+. .... ....+.+.....++.+++.++..++.+++ .+| +.+.++..+..
T Consensus 272 ~~~~~~~~-~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~~ 332 (451)
T 1pw4_A 272 LDWSPTYL-KEV----KHFA---LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHB-TTB----SCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHH-HHh----cCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHHH
Confidence 22222211 110 1111 11233455555666777777777776665 333 22334443333
Q ss_pred HHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhH
Q 007932 417 MAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGV 496 (584)
Q Consensus 417 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l 496 (584)
++++..... ...+.+......++.+++.....+..+.++.+.+|++.||++.|+.+....+
T Consensus 333 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 333 IATIVYWMN-------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HHHHHTTSC-------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 444333221 0013445566667778888888888889999999999999999999999999
Q ss_pred -HHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhh
Q 007932 497 -GNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASS 553 (584)
Q Consensus 497 -g~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~ 553 (584)
|..+++.+.+.+.+. .++...|++.+++.+++.+..++..+
T Consensus 394 ~g~~~~~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDF----------------FGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHS----------------SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887632 13456677777777777665555433
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=9.9e-25 Score=231.65 Aligned_cols=356 Identities=13% Similarity=0.032 Sum_probs=235.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH
Q 007932 24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL 103 (584)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~ 103 (584)
+++++.++.+....+...+..+.+.+.++ ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 44555666666666667666665555544 56789999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHH---HHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccce
Q 007932 104 IYVLGMILL---TMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS 180 (584)
Q Consensus 104 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 180 (584)
+.+++.+++ ..+ ++.+.++++|++.|++.|...+...++++|.+|++ +|++
T Consensus 100 ~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~ 153 (438)
T 3o7q_A 100 LYALGAALFWPAAEI--------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHF 153 (438)
T ss_dssp HHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHH
T ss_pred HHHHHHHHHHhcccc--------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHH
Confidence 999999888 443 56888999999999999999999999999999988 5999
Q ss_pred eeeeehhHHhHhHHHHhhhhhhhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHHHhCCce
Q 007932 181 FFNWWMFSSFIGALCATLGLVYIQ-ENLG-------------------------WGLGYGIPTAGLLFSLVIFYIGSPIY 234 (584)
Q Consensus 181 ~~~~~~~~~~~g~~~g~~~~~~l~-~~~~-------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~ 234 (584)
++++.+...++|..++|.+++++. +..+ |++.|++.++..++..+..+....
T Consensus 154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-- 231 (438)
T 3o7q_A 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF-- 231 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 999999999999999999999988 5544 999998777665555444333211
Q ss_pred eecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCccc
Q 007932 235 RHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTV 314 (584)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 314 (584)
|+. .+ + . ++++ + ++ ....++.+
T Consensus 232 ----p~~-~~--------------~--~-~~~~----~---~~-----------~~~~~~~~------------------ 253 (438)
T 3o7q_A 232 ----PAL-QS--------------D--N-HSDA----K---QG-----------SFSASLSR------------------ 253 (438)
T ss_dssp ----CCC-TT--------------T--C-CCCS----S---TT-----------SHHHHHHH------------------
T ss_pred ----Ccc-cc--------------c--c-cccc----c---cc-----------chhhhHHH------------------
Confidence 111 00 0 0 0000 0 00 00000000
Q ss_pred ccchhhHHHHHHHH-HHHHhhhhhhhhccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhh
Q 007932 315 TQVEGTKLVLGMAL-IWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMR 393 (584)
Q Consensus 315 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~ 393 (584)
..+.+.++.... .+.............+.++..+.. ... ....+.+.....++.+++.++..++.+|+.+
T Consensus 254 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 324 (438)
T 3o7q_A 254 --LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIP----GMT---AGFAANYLTGTMVCFFIGRFTGTWLISRFAP 324 (438)
T ss_dssp --HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST----TCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred --HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC----Ccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 000112222211 112222222222222222111110 110 1123344455566667777777777666555
Q ss_pred hccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceee
Q 007932 394 RRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEF 473 (584)
Q Consensus 394 r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~ 473 (584)
| +.+.++.++.+++++..... +..+.+..+++.+++.....+..+.+
T Consensus 325 ~-----------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~ 371 (438)
T 3o7q_A 325 H-----------KVLAAYALIAMALCLISAFA----------------------GGHVGLIALTLCSAFMSIQYPTIFSL 371 (438)
T ss_dssp H-----------HHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred h-----------HHHHHHHHHHHHHHHHHHHc----------------------CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 33566666666666554443 11133444567778888888888999
Q ss_pred eeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 007932 474 FYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKV 511 (584)
Q Consensus 474 ~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~ 511 (584)
..+..|++ ++.+.++.. .+.+|+.+++.+.+.+.+.
T Consensus 372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 88999977 899998877 6779999999999887653
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.92 E-value=7.7e-26 Score=244.18 Aligned_cols=418 Identities=11% Similarity=0.006 Sum_probs=232.1
Q ss_pred hhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHH
Q 007932 63 TVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFY 142 (584)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (584)
..+.+++++.+.++..++++++|+++||+ |||++++++.+++.++.++++++.......... ..-...-.++.+.++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~--~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD--NTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS--SSCCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch--hHHHHHHhhhHHHHH
Confidence 45678899999999999999999999999 999999999999999999988642100000000 000000125788999
Q ss_pred HHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcc--------cchhHHHH
Q 007932 143 SSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQEN--------LGWGLGYG 214 (584)
Q Consensus 143 ~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~~~~~~f~ 214 (584)
++|+++|++.|...+..+++++|..|++ +|++..++.+.+..+|..+++.++..+... .+|++.+.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 9999999999999999999999999988 699999999999999999988777665432 34676666
Q ss_pred HHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccccccccccccccccccCCCcchh
Q 007932 215 IPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRC 294 (584)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (584)
+..+..++..+..+..++..+....++ +..+..+.+.....+.... .+..+.++..... +. ....
T Consensus 205 ~~~~~~~~~~~~~~~~peSp~~L~~~~--~~~~a~~~l~~~~~~~~~~--------~~~~~~~~~~~~~-~~----~~~~ 269 (491)
T 4gc0_A 205 SECIPALLFLMLLYTVPESPRWLMSRG--KQEQAEGILRKIMGNTLAT--------QAVQEIKHSLDHG-RK----TGGR 269 (491)
T ss_dssp TTHHHHHHHHHHGGGSCCCHHHHHHTT--CHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH-HH----HTTH
T ss_pred hhhhhhhhhhhhhhcCCCChHHHHHcC--chhHHHHhHHHhcCCchhH--------HHHHHHHHHHHhh-hh----hhhH
Confidence 555544444333333222111110011 0000001100000000000 0000000000000 00 0000
Q ss_pred hhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhh--hhhhhhccccceEEEecccccCCCCCCcccCccccccc
Q 007932 295 LDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTL--IPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSF 372 (584)
Q Consensus 295 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 372 (584)
+. ....++............ ......... +.. .+ ... ...........+
T Consensus 270 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~----~~~---~~~~~~~~~~~~ 320 (491)
T 4gc0_A 270 LL--------------------MFGVGVIVIGVMLSIFQQFVGINVVLYYA-PEV-FK----TLG---ASTDIALLQTII 320 (491)
T ss_dssp HH--------------------HSCCTHHHHHHHHHHHHHHTCHHHHHHHH-HHH-HH----HSS---CCHHHHHHHHHH
T ss_pred HH--------------------HhcccHHHHHHHHHHHHHHhhhhHHHhcc-hHH-HH----hcC---CCccchhhHHHH
Confidence 00 000111111111111111 001111110 100 10 000 001112223334
Q ss_pred hhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhh
Q 007932 373 VTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWL 452 (584)
Q Consensus 373 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 452 (584)
..+..++...+..++.||++||. .+..+...++++++..+..... .......
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~-----------~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~ 372 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKP-----------LQIIGALGMAIGMFSLGTAFYT-----------------QAPGIVA 372 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHH-----------HHHHHHHHHHHHHHHHHHHHHT-----------------TCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcc-----------hhccchHHHHHHHHHHHHHHhc-----------------ccchHHH
Confidence 44556666666667777777663 3566666677766665554211 0111122
Q ss_pred HHHHHHHHH-HHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchh
Q 007932 453 LPQYVLLGV-ADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLD 531 (584)
Q Consensus 453 i~~~~l~g~-~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~ 531 (584)
+....+... ......+..+.+..|.+|.+.|++++|+.+..+++++++++.+.|.+.+.. |... ..+..
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~---~~~~~ 442 (491)
T 4gc0_A 373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLVA---HFHNG 442 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHHH---HHTTC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh---hhhhh
Confidence 222222222 223345667788999999999999999999999999999999988764311 1000 01223
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccc
Q 007932 532 YYYGFLMVISILNLGAFFWASSRYVYKRETKEVNEGCVEM 571 (584)
Q Consensus 532 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (584)
..|++++++++++.++.+++.||+|+++.||.++..+++.
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 4578888999999888888899999988877666555443
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=4.3e-23 Score=214.75 Aligned_cols=167 Identities=14% Similarity=0.076 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHH
Q 007932 31 AFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMI 110 (584)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~ 110 (584)
+.++...+...+....+.+.++.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||+++++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 455666777777777777766654 678999999999999999999999999999999999 999999999999999998
Q ss_pred HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932 111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF 190 (584)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 190 (584)
++..+ ++.+.+++.|++.|++.+...+...+++.|.+|++ +|++++++.+...+
T Consensus 81 ~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 81 VAVTT--------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGIL 134 (375)
T ss_dssp HHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHH
T ss_pred HHHHh--------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHH
Confidence 88887 45788999999999999999999999999999987 59999999999999
Q ss_pred HhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH
Q 007932 191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLV 225 (584)
Q Consensus 191 ~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~ 225 (584)
+|..++|.+++++.+..+|++.|++.++..++..+
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999988999999987765544443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=1.2e-22 Score=215.04 Aligned_cols=389 Identities=8% Similarity=-0.081 Sum_probs=217.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932 28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL 107 (584)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~ 107 (584)
|..+.+....++..+++..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 5667777777777777778889999999999999999999999999999999999999999999 999999998877654
Q ss_pred HHHHH---HHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932 108 GMILL---TMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW 184 (584)
Q Consensus 108 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (584)
+...+ ...... ...+..++++.+++.|...+.......+..++..+ +++..++.
T Consensus 86 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~ 142 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL-------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGR 142 (417)
T ss_dssp CHHHHHHHTHHHHH-------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHH
T ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHH
Confidence 32211 111100 00123344454554444433333334343332111 35666777
Q ss_pred ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCC
Q 007932 185 WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLP 264 (584)
Q Consensus 185 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (584)
.+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++ +++. . +.+
T Consensus 143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~-~------------------~~~ 198 (417)
T 2cfq_A 143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSS-A------------------TVA 198 (417)
T ss_dssp HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCS-S------------------CSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccc-c------------------ccc
Confidence 777789999999999999887 589999887665433332221111111 1100 0 000
Q ss_pred CCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHH-Hhhhhhhhhccc
Q 007932 265 DNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWL-VTLIPSTIWAQI 343 (584)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 343 (584)
+.. + ++ + ...+..++.+ .-..++.+....... ....++...++.
T Consensus 199 ~~~----~---~~--~------~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
T 2cfq_A 199 NAV----G---AN--H------SAFSLKLALE--------------------LFRQPKLWFLSLYVIGVSCTYDVFDQQF 243 (417)
T ss_dssp SSS----S---SC--C------CCCCHHHHHH--------------------HTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc----c---cc--c------ccccHHHHHH--------------------HhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00 0 0000000000 001122222221111 111222221222
Q ss_pred cceEEEecccccCCCCCCcc-cCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 007932 344 NTLFVKQGTTLNRSLSPSFR-IPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIA 422 (584)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~ 422 (584)
+.++ .+. .+.. +.. ...+.+..++.+...++..+..++.||+.+|+ .+.++..+.+++++..
T Consensus 244 ~~~~-~~~--~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 244 ANFF-TSF--FATG---EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----------ALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHH-HHT--SSSH---HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHH-HHH--Hhcc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----------HHHHHHHHHHHHHHHH
Confidence 2211 110 0000 000 01123333444455556666666666665552 3555666666554443
Q ss_pred HHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHH-HHHHhHHHHHH
Q 007932 423 YAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFF-TSGIGVGNFLN 501 (584)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~lg~~lg 501 (584)
+.. .+.+.++....+.+++.....+..+.++.|.+|++.||++.++. +..+.+|+.++
T Consensus 307 ~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 307 SFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp TTC---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 222 12333444445566666666666778899999999999999984 77888999999
Q ss_pred HHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhh
Q 007932 502 SFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASS 553 (584)
Q Consensus 502 ~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~ 553 (584)
+.+.+.+.+. .++...|.+.+++++++.+..+...+
T Consensus 366 p~l~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 366 SVLAGNMYES----------------IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp THHHHTHHHH----------------SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9998766531 13445677777777777665544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.35 E-value=1.1e-12 Score=138.91 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=150.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhccc-chhHHHHHHHHHH
Q 007932 27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYI-GRFWTFTLSSLIY 105 (584)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grk~~~~~~~~~~ 105 (584)
.+.++...+..++..+..+++..+++.|+++.+|.+..+.+++.+...++..++.++.|+++||+. |||+.+.++.++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 366788888888899999999999999999889999999999999999999999999999999932 7888888777665
Q ss_pred H-HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932 106 V-LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW 184 (584)
Q Consensus 106 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (584)
. ++.+++.+.. ..+.+.+.+..++.|++.+...+...+++.|.+|++ .|++++++
T Consensus 331 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~ 386 (451)
T 1pw4_A 331 VTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGF 386 (451)
T ss_dssp HHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHHH
T ss_pred HHHHHHHHHHhc------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh------hhhhHHHH
Confidence 5 5544443321 124666777788889998888888899999999988 59999999
Q ss_pred ehhHHhH-hHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932 185 WMFSSFI-GALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIG 230 (584)
Q Consensus 185 ~~~~~~~-g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~ 230 (584)
++...++ |..++|.+.+++.+..||+..|++.++..+++.++.+..
T Consensus 387 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 387 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999998887766666555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.35 E-value=4.2e-12 Score=134.10 Aligned_cols=168 Identities=12% Similarity=0.053 Sum_probs=137.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932 27 WKACAFLVGYEAFERMAFYGIQSNLVNY-LTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY 105 (584)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~ 105 (584)
.+.++..++..++.....+++..+++.| +++.+|.+..+.+...+...++..++.+++|+++||+ |||+++.++.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3567777777788888888889999999 8888899999999999999999999999999999998 9999999999888
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932 106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW 185 (584)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (584)
.++.+++... ++.+. .+..++.|++.+...|...++..|.+|++ ++.+.++.
T Consensus 336 ~~~~~~~~~~--------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 387 (438)
T 3o7q_A 336 MALCLISAFA--------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFI 387 (438)
T ss_dssp HHHHHHHHHC--------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHH
T ss_pred HHHHHHHHHc--------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHH
Confidence 8887777665 22333 33447788999999999999999999855 45555555
Q ss_pred hhHHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHH
Q 007932 186 MFSSFIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSL 224 (584)
Q Consensus 186 ~~~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~ 224 (584)
. ...+|+.++|.+.|++.+..| ++..|++.++..++..
T Consensus 388 ~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 388 V-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp H-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 5 567999999999999999888 9999887665544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.26 E-value=1e-11 Score=131.01 Aligned_cols=175 Identities=12% Similarity=0.006 Sum_probs=128.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---chhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932 28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHE---DTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI 104 (584)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~ 104 (584)
+..+......+.....++....+++.|+++.++. +....+...+...++..++.++.|+++||+ |||+++.++.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 3444444444444555555666788888766653 234456666777778888999999999999 999999988887
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932 105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW 184 (584)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (584)
.+++.+++.+. .+.+.+.+..++.+++.+...+....++.|.+|++ .|+++.++
T Consensus 299 ~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~ 352 (417)
T 2cfq_A 299 MSVRIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLV 352 (417)
T ss_dssp HHHHHHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHH
T ss_pred HHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHH
Confidence 77765555433 23455666666677776666667788999999987 58998888
Q ss_pred -ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932 185 -WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI 229 (584)
Q Consensus 185 -~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 229 (584)
++...++|+.++|.++|++.+..|+...|.+.++..+++.++.+.
T Consensus 353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 478888999999999999998888888888877776666555444
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.12 E-value=1.5e-10 Score=124.27 Aligned_cols=187 Identities=8% Similarity=0.003 Sum_probs=139.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHH-----HHH
Q 007932 28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFT-----LSS 102 (584)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~-----~~~ 102 (584)
...+.+..........+......++.|.++.++.+..+.+.......++..++.++.|++.||+ |||+... ++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHH
Confidence 3445555556666666666777888899888888877888888999999999999999999998 9986554 677
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932 103 LIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF 182 (584)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (584)
++..++.+++........ .+...+.+.+.+..++.|++.+...+...+++.|.+|++ .|+++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~ 424 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYG-----------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA------FNSQMM 424 (491)
T ss_dssp HHHHHHHTTTHHHHHHCC-----------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT------CSSSST
T ss_pred HHHHHHHHHHHHHHHhcC-----------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHHH
Confidence 777777666655421100 001134566777788899999999999999999999988 599999
Q ss_pred eeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCc
Q 007932 183 NWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPI 233 (584)
Q Consensus 183 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 233 (584)
++.+...++|..+++.+.+++.+ .++...|.+.+...++..++.+...++
T Consensus 425 g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 425 SMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876 466777777777666666555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.93 E-value=1.2e-09 Score=116.97 Aligned_cols=182 Identities=12% Similarity=0.105 Sum_probs=123.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932 28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL 107 (584)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~ 107 (584)
+..........+.+...+........++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 4444444444444444333334444555667788887777777788889999999999999999 999999999888888
Q ss_pred HHHHHHHhhhccccCCCCCCCCcCCCCcchHH-HHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932 108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIA-FFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM 186 (584)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (584)
+.+.++...... ..... ......+..+.+. ...|....+.+|.+|.+ .|+++.++.+
T Consensus 355 ~~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~------~R~~~~g~~~ 412 (491)
T 4gc0_A 355 GMFSLGTAFYTQ---------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNA------IRGKALAIAV 412 (491)
T ss_dssp HHHHHHHHHHTT---------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTT------THHHHHHHHH
T ss_pred HHHHHHHHHhcc---------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHh------HHHHHHHHHH
Confidence 877666543211 11222 2222222222332 23467778999999998 5999999999
Q ss_pred hHHhHhHHHHhhhhhhhhc------ccchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932 187 FSSFIGALCATLGLVYIQE------NLGWGLGYGIPTAGLLFSLVIFYIGSP 232 (584)
Q Consensus 187 ~~~~~g~~~g~~~~~~l~~------~~~~~~~f~~~~~~~~~~~~~~~~~~~ 232 (584)
....+|+.+++.+.+.+.+ ..++...|++.++..+++.++.++..|
T Consensus 413 ~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 413 AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 9999999999887766643 234566777777776666666665554
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.83 E-value=4.7e-10 Score=115.92 Aligned_cols=165 Identities=8% Similarity=-0.049 Sum_probs=128.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH-HH
Q 007932 28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI-YV 106 (584)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~-~~ 106 (584)
|.++...+..++.....+++..+.+.|+++.+|.++.+.+.+.+...++..++.++.|++.||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 5567777778888888888889999999888999999999999999999999999999999998 873 2333322 22
Q ss_pred HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932 107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM 186 (584)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (584)
.+..+...... + ..+.+.+.+..++.|++.+...+...++..|.+| + +|+++.++.+
T Consensus 276 ~~~~~~~~~~~-~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~------~~g~~~g~~~ 332 (375)
T 2gfp_A 276 AGLLMWIPDWF-G---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F------LAGTAGALVG 332 (375)
T ss_dssp TSSSSSHHHHH-H---------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H------HHHHHHHHHH
T ss_pred HHHHHHHHhhh-c---------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c------ccchHHHHHH
Confidence 22221111100 0 0245667777888899999999999999999998 5 5999999999
Q ss_pred hHHhHhHHHHhhhhhhhhcccchhHHHHHHHH
Q 007932 187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTA 218 (584)
Q Consensus 187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~ 218 (584)
...++|..++|.+.+.+.+..++...+.+.++
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999999999887778777765443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.01 E-value=1.7e-06 Score=93.31 Aligned_cols=147 Identities=12% Similarity=0.110 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHHHhhhHhHHHh----hcccch----hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcch
Q 007932 66 SVRNVNNWSGVVWITPLLGAYIA----DTYIGR----FWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQ 137 (584)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~G~la----D~~~Gr----k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (584)
.+.+.....++..+..++.+++. ||. || ++.+.++.++.+++.+++....... ..+...+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 404 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMM-----------DGGSALS 404 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----------TTTCCCC
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCCcC
Confidence 45555555556666667777664 444 43 2456677777666665554431000 0000134
Q ss_pred HHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhccc--ch------
Q 007932 138 IAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENL--GW------ 209 (584)
Q Consensus 138 ~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--~~------ 209 (584)
.+.+.+..++.|++.+...+...+++.|.+|++ .|++++++++...++|..++|.+.+.+.+.. +|
T Consensus 405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~ 478 (524)
T 2xut_A 405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKA------MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGM 478 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT------CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 556777788899999999999999999999988 5999999999999999999999999987642 23
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHh
Q 007932 210 ---GLGYGIPTAGLLFSLVIFYIG 230 (584)
Q Consensus 210 ---~~~f~~~~~~~~~~~~~~~~~ 230 (584)
+..|++.+...+++.++.+..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 479 SVTAFQMFFFAGFAILAAIVFALY 502 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cccccHHHHHHHHHHHHHHHHHHH
Confidence 223555555555554444333
Done!