Query 007933
Match_columns 584
No_of_seqs 387 out of 2769
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 17:16:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697 Protein phosphatase 1B 100.0 1.5E-46 3.1E-51 367.0 13.9 259 298-579 21-297 (379)
2 PLN03145 Protein phosphatase 2 100.0 8.5E-46 1.8E-50 391.6 19.8 250 299-577 65-334 (365)
3 KOG0698 Serine/threonine prote 100.0 5.2E-44 1.1E-48 375.4 17.7 246 313-577 48-308 (330)
4 PTZ00224 protein phosphatase 2 100.0 1.9E-42 4.1E-47 367.4 18.4 245 297-576 20-274 (381)
5 PF00481 PP2C: Protein phospha 100.0 9.9E-43 2.1E-47 353.2 9.2 234 312-565 7-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 1.1E-39 2.3E-44 332.3 16.3 244 298-577 7-256 (262)
7 KOG0699 Serine/threonine prote 100.0 5.7E-38 1.2E-42 315.9 16.2 161 401-575 331-505 (542)
8 cd00143 PP2Cc Serine/threonine 100.0 2.6E-33 5.6E-38 281.2 17.7 237 313-572 9-254 (254)
9 PRK14559 putative protein seri 100.0 9.9E-34 2.2E-38 316.4 15.7 244 298-579 374-641 (645)
10 KOG0700 Protein phosphatase 2C 100.0 3.4E-33 7.3E-38 289.0 11.4 229 318-560 84-378 (390)
11 smart00332 PP2Cc Serine/threon 100.0 3.6E-32 7.9E-37 273.8 17.0 233 313-570 14-255 (255)
12 KOG1323 Serine/threonine phosp 100.0 3E-31 6.5E-36 265.1 15.7 321 242-575 18-489 (493)
13 KOG1379 Serine/threonine prote 99.8 1.5E-19 3.2E-24 182.2 15.6 211 318-571 90-329 (330)
14 KOG0618 Serine/threonine phosp 99.7 8.5E-18 1.8E-22 188.4 12.8 249 297-577 520-776 (1081)
15 PF13672 PP2C_2: Protein phosp 99.6 9.3E-16 2E-20 150.9 8.7 179 313-533 6-194 (212)
16 PF00498 FHA: FHA domain; Int 99.6 4.9E-16 1.1E-20 125.5 5.1 68 204-280 1-68 (68)
17 smart00331 PP2C_SIG Sigma fact 99.5 2.6E-13 5.6E-18 131.5 15.0 172 319-557 17-192 (193)
18 cd00060 FHA Forkhead associate 99.4 1.3E-12 2.9E-17 112.9 9.5 89 178-281 2-93 (102)
19 TIGR03354 VI_FHA type VI secre 99.4 1E-12 2.2E-17 141.2 9.3 94 179-288 2-103 (396)
20 PLN02927 antheraxanthin epoxid 99.4 1.4E-12 3.1E-17 147.7 9.3 98 175-282 531-637 (668)
21 TIGR02865 spore_II_E stage II 99.3 4.3E-11 9.2E-16 138.8 19.0 202 298-572 551-763 (764)
22 KOG1881 Anion exchanger adapto 99.3 3.8E-12 8.3E-17 139.8 9.3 123 160-294 139-270 (793)
23 COG1716 FOG: FHA domain [Signa 99.3 6.8E-12 1.5E-16 121.6 8.0 70 203-284 90-159 (191)
24 smart00240 FHA Forkhead associ 99.2 2.3E-11 5.1E-16 92.6 3.9 51 204-255 1-52 (52)
25 PF07228 SpoIIE: Stage II spor 99.1 1.2E-09 2.5E-14 105.6 12.8 179 334-573 3-193 (193)
26 KOG1882 Transcriptional regula 99.1 7.9E-11 1.7E-15 114.3 3.6 130 145-286 136-282 (293)
27 COG3456 Predicted component of 99.0 6.5E-10 1.4E-14 116.7 7.7 95 178-288 3-104 (430)
28 KOG1880 Nuclear inhibitor of p 98.5 4.4E-08 9.6E-13 98.3 3.2 107 168-287 8-116 (337)
29 TIGR02500 type_III_yscD type I 98.0 9.9E-06 2.1E-10 88.2 7.8 92 178-286 1-93 (410)
30 KOG0615 Serine/threonine prote 97.3 0.00032 6.9E-09 74.5 5.2 78 203-289 65-155 (475)
31 COG2208 RsbU Serine phosphatas 97.1 0.016 3.5E-07 62.2 16.1 62 505-573 294-366 (367)
32 KOG0245 Kinesin-like protein [ 94.6 0.061 1.3E-06 62.9 6.5 77 191-283 471-550 (1221)
33 KOG1892 Actin filament-binding 94.0 0.15 3.4E-06 59.1 7.8 94 179-289 358-456 (1629)
34 KOG2293 Daxx-interacting prote 93.5 0.12 2.6E-06 56.7 5.7 92 179-287 432-530 (547)
35 TIGR01663 PNK-3'Pase polynucle 92.1 0.2 4.4E-06 56.3 5.4 79 190-284 25-103 (526)
36 KOG0241 Kinesin-like protein [ 85.2 1.3 2.8E-05 51.8 5.4 95 177-289 446-542 (1714)
37 PF15102 TMEM154: TMEM154 prot 80.8 1.4 3.1E-05 40.8 2.9 27 13-39 68-94 (146)
38 PRK15367 type III secretion sy 77.6 6.4 0.00014 42.5 7.0 89 176-286 3-91 (395)
39 PF12273 RCR: Chitin synthesis 64.6 3.7 8.1E-05 37.4 1.6 19 10-28 4-22 (130)
40 PF15176 LRR19-TM: Leucine-ric 64.5 5.7 0.00012 34.5 2.5 31 9-39 22-52 (102)
41 KOG1094 Discoidin domain recep 63.8 14 0.0003 42.1 5.9 24 12-35 397-420 (807)
42 PF06679 DUF1180: Protein of u 50.1 17 0.00038 34.6 3.5 27 8-34 95-121 (163)
43 cd01324 cbb3_Oxidase_CcoQ Cyto 49.7 22 0.00048 26.7 3.3 23 9-31 13-35 (48)
44 PF12273 RCR: Chitin synthesis 47.7 17 0.00038 33.0 3.0 32 5-36 2-33 (130)
45 PF11027 DUF2615: Protein of u 45.9 20 0.00043 31.5 2.9 26 8-33 53-78 (103)
46 PF08114 PMP1_2: ATPase proteo 43.3 14 0.00029 26.8 1.2 25 7-31 10-34 (43)
47 PF07423 DUF1510: Protein of u 41.1 23 0.0005 35.3 2.9 19 9-27 17-35 (217)
48 PF02439 Adeno_E3_CR2: Adenovi 36.4 48 0.001 23.7 3.0 26 6-31 7-32 (38)
49 PF13253 DUF4044: Protein of u 35.8 47 0.001 23.4 2.9 22 4-25 9-30 (35)
50 COG4736 CcoQ Cbb3-type cytochr 35.7 48 0.001 26.2 3.3 27 7-33 10-36 (60)
51 PF05545 FixQ: Cbb3-type cytoc 34.8 47 0.001 24.8 3.1 23 9-31 12-34 (49)
52 PF13275 S4_2: S4 domain; PDB: 34.7 29 0.00062 27.9 2.0 32 246-286 33-64 (65)
53 PF12911 OppC_N: N-terminal TM 33.1 45 0.00098 25.2 2.8 22 5-26 14-35 (56)
54 PRK06531 yajC preprotein trans 32.7 34 0.00073 30.6 2.3 19 13-31 6-24 (113)
55 TIGR02988 YaaA_near_RecF S4 do 29.5 44 0.00095 25.8 2.2 25 246-279 34-58 (59)
56 PF01479 S4: S4 domain; Inter 29.0 29 0.00062 25.4 1.1 23 246-277 26-48 (48)
57 TIGR00847 ccoS cytochrome oxid 27.9 72 0.0016 24.4 3.0 9 44-52 30-38 (51)
58 PF14575 EphA2_TM: Ephrin type 27.5 67 0.0014 26.5 3.1 19 11-29 7-25 (75)
59 PF05393 Hum_adeno_E3A: Human 26.4 98 0.0021 26.4 3.8 28 9-36 37-64 (94)
60 COG5025 Transcription factor o 25.9 53 0.0012 37.8 2.9 65 218-288 124-188 (610)
61 PHA00007 E cell lysis protein 25.7 84 0.0018 26.1 3.2 22 5-26 7-28 (91)
62 KOG1110 Putative steroid membr 24.2 89 0.0019 30.2 3.6 61 10-74 9-69 (183)
63 PF14316 DUF4381: Domain of un 24.0 56 0.0012 30.3 2.3 23 10-32 25-47 (146)
64 PRK11507 ribosome-associated p 24.0 86 0.0019 25.6 3.0 32 246-286 37-68 (70)
65 PF07172 GRP: Glycine rich pro 23.2 78 0.0017 27.4 2.8 8 15-22 11-18 (95)
66 PF15102 TMEM154: TMEM154 prot 21.5 63 0.0014 30.2 2.0 27 10-36 62-88 (146)
No 1
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-46 Score=367.03 Aligned_cols=259 Identities=26% Similarity=0.356 Sum_probs=214.8
Q ss_pred cccccccCChhHHhhcCccCCCccceeeccCCC-CCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhh--h
Q 007933 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPLP-GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRER--L 374 (584)
Q Consensus 298 ~~~vG~asd~~~~~~~G~R~~nED~~~v~~~~~-~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~--~ 374 (584)
.+.+|.+|- +|||..|||++.....++ +...|++|||||||.|+..|.+|++.|.+.|... ..+++. .
T Consensus 21 glryg~SSM------QGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~ss---e~F~~~~k~ 91 (379)
T KOG0697|consen 21 GLRYGVSSM------QGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISS---EEFRGMTKN 91 (379)
T ss_pred ceeeeeccc------cchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhh---HHHhhhccC
Confidence 444566553 499999999998765554 4678999999999999999999999998887542 111110 0
Q ss_pred hccCChhHHHHHHhhhhhhhhhcc--------cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccc
Q 007933 375 LSQCDASDVLRDAFFQTEASMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRI 446 (584)
Q Consensus 375 ~~~~~~~~~L~~af~~~d~~i~~~--------~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r~g~~~qLT~DH~~ 446 (584)
-+-.+++.-|+..|+++|+.++.. .+||||+.+++.... +|++|+||||++++|+|+++.-|.||+|
T Consensus 92 gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h-----~y~~NcGDSRavl~rng~~~f~TqDHKP 166 (379)
T KOG0697|consen 92 GSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTH-----IYIINCGDSRAVLCRNGEVVFSTQDHKP 166 (379)
T ss_pred CcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCce-----EEEEecCcchhheecCCceEEeccCCCC
Confidence 112467889999999999887643 479999888886554 6899999999999999999999999999
Q ss_pred cchhhhhhhhhcCCcCCCCCeeeec-chhhhhhhhhhhhcc------ccccCCCCCccceeeecccccceeeeccCCcce
Q 007933 447 ASYSERLRIQETGEPLKDGETRLCG-LNLARMLGDKFLKQQ------DARFSAEPYISPVVHIDQASKAFALLASDGFWD 519 (584)
Q Consensus 447 ~~~~E~~RI~~~Gg~i~~g~~Rv~G-LalsRslGD~~~K~~------~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD 519 (584)
.++.|++||+.+||.+.- .|++| ||+|||||||+||.. .+.||+||+|.. ......++|+||||||+||
T Consensus 167 ~~p~EkeRIqnAGGSVMI--qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~--~~R~eedeFivlACDGIwD 242 (379)
T KOG0697|consen 167 YLPKEKERIQNAGGSVMI--QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYI--IERSEEDEFIVLACDGIWD 242 (379)
T ss_pred CChHHHHHHhcCCCeEEE--EEecceeeeehhccCcccccCCCCCchhcccCCCCceEE--eeccccCcEEEEEccchhh
Confidence 999999999999999874 49999 999999999999976 368999999963 2333467899999999999
Q ss_pred eccHHHHHHHHHHHhhhhcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcceee
Q 007933 520 VISVKKAIQLVVQMREKYSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFRMS 579 (584)
Q Consensus 520 ~ls~~ei~~lv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVv~~~~~~~~~ 579 (584)
+|+++|++++|..-.+. ..+...+|+.+++.++.+|++||||+|+|.|...|..+
T Consensus 243 VMtneelcefv~sRl~V-----t~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~APkv~ 297 (379)
T KOG0697|consen 243 VMTNEELCEFVKSRLEV-----TSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAPKVS 297 (379)
T ss_pred hcccHHHHHHHHhhhee-----cccHHHHHHHHHHHHHhccCccCceEEEEecCCCCCCC
Confidence 99999999999763321 46799999999999999999999999999999988655
No 2
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=8.5e-46 Score=391.64 Aligned_cols=250 Identities=30% Similarity=0.431 Sum_probs=205.1
Q ss_pred ccccccCChhHHhhcCccCCCccceeeccCCC--------CCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhh
Q 007933 299 FGVGVASDPMALRRGAKKLPMEDVCYYHWPLP--------GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLK 370 (584)
Q Consensus 299 ~~vG~asd~~~~~~~G~R~~nED~~~v~~~~~--------~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~ 370 (584)
+.+|.+++. |.|+.|||++++..++. ......||||||||||+.+|++|++.+++.|.+....
T Consensus 65 ~~~~~~s~~------G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~--- 135 (365)
T PLN03145 65 VRSGAWADI------GSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDF--- 135 (365)
T ss_pred eEEEEEccc------cCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhcc---
Confidence 567888885 78999999998754431 1224679999999999999999999999988652110
Q ss_pred hhhhhccCChhHHHHHHhhhhhhhhhcc-------cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeeccc
Q 007933 371 RERLLSQCDASDVLRDAFFQTEASMNHH-------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSED 443 (584)
Q Consensus 371 ~e~~~~~~~~~~~L~~af~~~d~~i~~~-------~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r~g~~~qLT~D 443 (584)
...+.++|+++|.+++..+.+. .+|||++++++..+. +|||||||||||++++|++++||+|
T Consensus 136 ------~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~-----l~vaNvGDSRayl~r~g~~~~LT~D 204 (365)
T PLN03145 136 ------PREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRS-----LVVANAGDCRAVLCRRGKAIEMSRD 204 (365)
T ss_pred ------chhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCe-----EEEEecCCceEEEEcCCeEEEecCC
Confidence 2346788999999999887542 479999988886543 7899999999999999999999999
Q ss_pred ccccchhhhhhhhhcCCcCCCCCeeeec-chhhhhhhhhhhhccc----cccCCCCCccceeeecccccceeeeccCCcc
Q 007933 444 HRIASYSERLRIQETGEPLKDGETRLCG-LNLARMLGDKFLKQQD----ARFSAEPYISPVVHIDQASKAFALLASDGFW 518 (584)
Q Consensus 444 H~~~~~~E~~RI~~~Gg~i~~g~~Rv~G-LalsRslGD~~~K~~~----~~vs~eP~I~~~~~i~~~~ddflVLaSDGLw 518 (584)
|++.++.|++||++.|+.+..+ |++| +++||+|||+.+|..+ ..++++|+|.. +.+. ..+.||||||||||
T Consensus 205 H~~~~~~E~~RI~~~Gg~v~~g--~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~-~~l~-~~D~fLILaSDGLw 280 (365)
T PLN03145 205 HKPMCSKERKRIEASGGYVYDG--YLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMT-TQLT-EEDEFLIIGCDGIW 280 (365)
T ss_pred CCCCCHHHHHHHHHcCCceecc--eECCccccccccccccccccccccCCCcceEEEEEE-EECC-CCCEEEEEeCCccc
Confidence 9999999999999999999876 8888 8999999999887542 34788999973 2343 24679999999999
Q ss_pred eeccHHHHHHHHHHHhhhhcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcce
Q 007933 519 DVISVKKAIQLVVQMREKYSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFR 577 (584)
Q Consensus 519 D~ls~~ei~~lv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVv~~~~~~~ 577 (584)
|+|+++++++++.+.... ..+++++|+.|+++|+.+++.||||||||.|+..+.
T Consensus 281 dvls~ee~v~~i~~~l~~-----~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~~ 334 (365)
T PLN03145 281 DVFRSQNAVDFARRRLQE-----HNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQPP 334 (365)
T ss_pred cCcCHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCCC
Confidence 999999999988664321 246889999999999999999999999999997433
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-44 Score=375.44 Aligned_cols=246 Identities=33% Similarity=0.438 Sum_probs=205.9
Q ss_pred cCccCCCccceeeccCCC-----CCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHH
Q 007933 313 GAKKLPMEDVCYYHWPLP-----GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDA 387 (584)
Q Consensus 313 ~G~R~~nED~~~v~~~~~-----~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~a 387 (584)
+|+|..|||.+.+...+. +....++|||||||||+.+|+|+.+.++..+.+.+...... ..+..+++++
T Consensus 48 ~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~------~~~~~a~~~~ 121 (330)
T KOG0698|consen 48 RGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDR------QDVKDALRRA 121 (330)
T ss_pred CCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccch------HHHHHHHHHH
Confidence 589999999998875533 22358999999999999999999999999998765542211 3478999999
Q ss_pred hh-hhhhhhhc-----ccccccEEEEEEEecCCcchhhcccccCCceeEEeecC-ceeeecccccccchhhhhhhhhcCC
Q 007933 388 FF-QTEASMNH-----HYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDG-KQIKMSEDHRIASYSERLRIQETGE 460 (584)
Q Consensus 388 f~-~~d~~i~~-----~~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r~g-~~~qLT~DH~~~~~~E~~RI~~~Gg 460 (584)
|. ++|..+.. ...|+||+++++.... . +||||+|||||+|++.| ++++||.||+|..+.|++||+++||
T Consensus 122 F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~-~---l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG 197 (330)
T KOG0698|consen 122 FLTKTDSEFLEKREDNRSGGSTAVVALIKKGR-K---LYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGG 197 (330)
T ss_pred HHHHHHHHHHhhccCCCCCcceeeeeeEecCC-E---EEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCC
Confidence 99 69998885 3567777766665332 2 78999999999999766 8999999999999999999999999
Q ss_pred cCCCC--Ceeeec-chhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhh
Q 007933 461 PLKDG--ETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKY 537 (584)
Q Consensus 461 ~i~~g--~~Rv~G-LalsRslGD~~~K~~~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~ei~~lv~~~~~~~ 537 (584)
.+... .+|++| ||+||+|||+.+|. +.|+++|+|.. ......++|||||||||||+|+++|++++|+.....
T Consensus 198 ~v~~~~~~~Rv~G~LavsRa~GD~~~k~--~~v~a~Pei~~--~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~- 272 (330)
T KOG0698|consen 198 RVSNWGGVWRVNGVLAVSRAFGDVELKS--QGVIAEPEIQQ--VKINSDDEFLILASDGIWDVVSNQEAVDLVRDELAS- 272 (330)
T ss_pred EEEEcCCcceEeceEEEeeecCCHHhcC--CcEecCCceEE--EEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhc-
Confidence 98643 579999 99999999999996 45999999983 333445789999999999999999999999885411
Q ss_pred cccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcce
Q 007933 538 SADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFR 577 (584)
Q Consensus 538 ~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVv~~~~~~~ 577 (584)
...+..++..|...|+.+++.||||||||.|.++..
T Consensus 273 ----~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~~ 308 (330)
T KOG0698|consen 273 ----ISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSPK 308 (330)
T ss_pred ----cccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCccc
Confidence 356899999999999999999999999999999864
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.9e-42 Score=367.39 Aligned_cols=245 Identities=24% Similarity=0.356 Sum_probs=198.7
Q ss_pred ccccccccCChhHHhhcCccCCCccceeeccCCCCCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhc
Q 007933 297 IPFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLS 376 (584)
Q Consensus 297 ~~~~vG~asd~~~~~~~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~~~ 376 (584)
..+.+|.+++. |+|++|||++++.. .+...+|||||||||..+|+++++.+++.+.+...
T Consensus 20 ~~~~~g~~s~~------G~R~~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~---------- 79 (381)
T PTZ00224 20 SIFRCASACVN------GYRESMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE---------- 79 (381)
T ss_pred ccEEEEEEeCC------CCCCCCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc----------
Confidence 35667888874 88999999987642 23457999999999999999999888876643110
Q ss_pred cCChhHHHHHHhhhhhhhhhcc--cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhh
Q 007933 377 QCDASDVLRDAFFQTEASMNHH--YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLR 454 (584)
Q Consensus 377 ~~~~~~~L~~af~~~d~~i~~~--~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r~g~~~qLT~DH~~~~~~E~~R 454 (584)
....+.|+++|..++..+.+. ..|||++++++..+. + +|||||||||||++++|++++||+||++.++.|+.|
T Consensus 80 -~~~~~~l~~a~~~~d~~i~~~~~~~GsTatv~lI~~~~-~---l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~R 154 (381)
T PTZ00224 80 -PMTDERMEELCLEIDEEWMDSGREGGSTGTFCVIMKDV-H---LQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQR 154 (381)
T ss_pred -cccHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEECC-E---EEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhH
Confidence 112356888898888877654 469999888776432 2 789999999999999999999999999999999999
Q ss_pred hhhcCCcCCCCCeeeec-chhhhhhhhhhhhccc------cccCCCCCccceeeecccccceeeeccCCcce-eccHHHH
Q 007933 455 IQETGEPLKDGETRLCG-LNLARMLGDKFLKQQD------ARFSAEPYISPVVHIDQASKAFALLASDGFWD-VISVKKA 526 (584)
Q Consensus 455 I~~~Gg~i~~g~~Rv~G-LalsRslGD~~~K~~~------~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD-~ls~~ei 526 (584)
|.+.|+.+..+ |++| +++||+|||..+|..+ +.++++|+|.. +....+|||||||||||| +++++++
T Consensus 155 I~~~gg~v~~~--Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~---~~l~~~D~llLaSDGL~d~~ls~eEi 229 (381)
T PTZ00224 155 IEACGGRVVSN--RVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTH---LTCQSNDFIILACDGVFEGNFSNEEV 229 (381)
T ss_pred HHHccCEeccc--cccCceeeecccCCcccccccccccccCcceeeeEEEE---EECCCCCEEEEECCCcCcCccCHHHH
Confidence 99999988765 8999 9999999998887553 24678898873 333468899999999999 8999999
Q ss_pred HHHHHHHhhhhcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcc
Q 007933 527 IQLVVQMREKYSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTF 576 (584)
Q Consensus 527 ~~lv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVv~~~~~~ 576 (584)
++++.+.... ..+++.+|+.|+++|+.+|+.||||||||+|..-.
T Consensus 230 ~~iv~~~l~~-----~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 230 VAFVKEQLET-----CDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGA 274 (381)
T ss_pred HHHHHHHHhc-----CCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCC
Confidence 9998753221 24689999999999999999999999999998754
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=9.9e-43 Score=353.18 Aligned_cols=234 Identities=36% Similarity=0.508 Sum_probs=187.2
Q ss_pred hcCccCCCccceeeccCCC---CCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHh
Q 007933 312 RGAKKLPMEDVCYYHWPLP---GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAF 388 (584)
Q Consensus 312 ~~G~R~~nED~~~v~~~~~---~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af 388 (584)
.+|+|..|||.+++..++. +..+..+|||||||||..+++++++.+++.+.+....... .++.++|..+|
T Consensus 7 ~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~-------~~~~~al~~a~ 79 (254)
T PF00481_consen 7 MQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDG-------NDIEEALRQAF 79 (254)
T ss_dssp EECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHH
T ss_pred CCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccc-------cchhhccccee
Confidence 3699999999999986553 4567899999999999999999999999888776554321 15678999999
Q ss_pred hh-hhhhhhc-------ccccccEEEEEEEecCCcchhhcccccCCceeEEeecCcee-eecccccccchhhhhhhhhcC
Q 007933 389 FQ-TEASMNH-------HYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQI-KMSEDHRIASYSERLRIQETG 459 (584)
Q Consensus 389 ~~-~d~~i~~-------~~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r~g~~~-qLT~DH~~~~~~E~~RI~~~G 459 (584)
.. ++..+.. ..+||||+++++..+. +|||||||||||+++++... +||+||+|.++.|+.||+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~-----l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~g 154 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNK-----LYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAG 154 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTE-----EEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT
T ss_pred eecccccccccccccccccccccccccccccce-----eEEEeeeeeeeeeeeccccccccccccccchhhccceeeccc
Confidence 99 7776654 3789999998887554 78999999999999999988 999999999999999999999
Q ss_pred CcCCCCCeeeec-chhhhhhhhhhhhcc-ccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhh
Q 007933 460 EPLKDGETRLCG-LNLARMLGDKFLKQQ-DARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKY 537 (584)
Q Consensus 460 g~i~~g~~Rv~G-LalsRslGD~~~K~~-~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~ei~~lv~~~~~~~ 537 (584)
+.+.. ..|+.| |++||+|||+.+|.. +..|+++|+|.. +.+.. .++|||||||||||+++++++++++.+....
T Consensus 155 g~v~~-~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~-~~l~~-~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~- 230 (254)
T PF00481_consen 155 GRVSE-NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISE-VDLTP-DDEFLVLASDGLWDVLSNEEIVDIVRESLNS- 230 (254)
T ss_dssp -GEEE-TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEE-EEEBT-TEEEEEEE-HHHHTTSHHHHHHHHHHHHHHH-
T ss_pred ccccc-chhhhhccccccccccccccccccceeeeeccccc-ccccc-cceEEEEEcccccccCCHHHHHHHHHHHHhc-
Confidence 99874 569999 899999999999972 235999999983 45554 3679999999999999999999999886422
Q ss_pred cccccchHHHHHHHHhhhhhhccccCCc
Q 007933 538 SADKENSTEKIANVLLSEARTLRTKDNT 565 (584)
Q Consensus 538 ~~~~~~~~~~~A~~Lv~~A~~~gs~DNi 565 (584)
...++.+|+.|+++|+.+|++|||
T Consensus 231 ----~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 231 ----GRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp ----HSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred ----CCcHHHHHHHHHHHHHhcCCCCCC
Confidence 225899999999999999999997
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-39 Score=332.28 Aligned_cols=244 Identities=26% Similarity=0.377 Sum_probs=195.6
Q ss_pred cccccccCChhHHhhcCccCCCccceeeccCCCCCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhcc
Q 007933 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQ 377 (584)
Q Consensus 298 ~~~vG~asd~~~~~~~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~~~~ 377 (584)
.+.+...++. ++.|.+|||++++.....+.. ..||+|||||||+.++++||+.+++.|.+.+.........
T Consensus 7 ~~~~~~~s~~-----g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~--- 77 (262)
T COG0631 7 SLKVAGLSDV-----GTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLN--- 77 (262)
T ss_pred eeeeeeeccC-----CCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccc---
Confidence 3445556664 678889999999875333333 6799999999999999999999999999987765432211
Q ss_pred CChhHHHHHHhhhhhhhhhcc------cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhh
Q 007933 378 CDASDVLRDAFFQTEASMNHH------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSE 451 (584)
Q Consensus 378 ~~~~~~L~~af~~~d~~i~~~------~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r~g~~~qLT~DH~~~~~~E 451 (584)
....++|.+++..+++.+... ..||++|++++...+++ +|||||||||+|++++|++++||+||++.+..|
T Consensus 78 ~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~---l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~ 154 (262)
T COG0631 78 ESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNK---LYVANVGDSRAYLLRDGELKQLTEDHSLVNRLE 154 (262)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCe---EEEEEccCCeEEEEcCCceEEeccCCcHHHHHH
Confidence 116788999999888877653 35777777776666654 789999999999999999999999999999999
Q ss_pred hhhhhhcCCcCCCCCeeeecchhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHH
Q 007933 452 RLRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVV 531 (584)
Q Consensus 452 ~~RI~~~Gg~i~~g~~Rv~GLalsRslGD~~~K~~~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~ei~~lv~ 531 (584)
+.|+...++..... |.+ ++||+||+... .+|++.. ....+++|+|||||||||+++++++.+++.
T Consensus 155 ~~~~~~~~~~~~~~--~~~--~ltralG~~~~--------~~p~~~~---~~~~~~d~llL~SDGl~d~v~~~~i~~il~ 219 (262)
T COG0631 155 QRGIITPEEARSHP--RRN--ALTRALGDFDL--------LEPDITE---LELEPGDFLLLCSDGLWDVVSDDEIVDILK 219 (262)
T ss_pred HhcCCCHHHHHhCc--cch--hhhhhcCCCcc--------cceeEEE---EEcCCCCEEEEECCCCccCcCHHHHHHHHh
Confidence 99976665554432 333 89999998765 4777763 333356999999999999999999999997
Q ss_pred HHhhhhcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcce
Q 007933 532 QMREKYSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFR 577 (584)
Q Consensus 532 ~~~~~~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVv~~~~~~~ 577 (584)
. ..+++++|+.|++.|+..++.||+|+|+|.+..+..
T Consensus 220 ~---------~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~~~ 256 (262)
T COG0631 220 N---------SETPQEAADKLIELALEGGGPDNITVVLVRLNGEGE 256 (262)
T ss_pred c---------CCCHHHHHHHHHHHHHhcCCCCceEEEEEEeecccc
Confidence 5 468999999999999999999999999999987763
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-38 Score=315.88 Aligned_cols=161 Identities=34% Similarity=0.505 Sum_probs=140.3
Q ss_pred cccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhcCCcCC-CCCeeeec-chhhhhh
Q 007933 401 GCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLK-DGETRLCG-LNLARML 478 (584)
Q Consensus 401 GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r~g~~~qLT~DH~~~~~~E~~RI~~~Gg~i~-~g~~Rv~G-LalsRsl 478 (584)
||||+|+++..++ |||||.|||||+++|+|+++.||.||+|..+.|-.||.++||.+. .| ||+| |++||+|
T Consensus 331 GtTAvVcLv~g~~-----liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDG--RVNGGLNLSRA~ 403 (542)
T KOG0699|consen 331 GTTAVVCLVGGDK-----LIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDG--RVNGGLNLSRAF 403 (542)
T ss_pred CceEEEEEecCce-----EEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecc--eecCccchhhhh
Confidence 9999999996554 789999999999999999999999999999999999999999997 77 9999 9999999
Q ss_pred hhhhhhccc------cccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccchHHHHHHHH
Q 007933 479 GDKFLKQQD------ARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKENSTEKIANVL 552 (584)
Q Consensus 479 GD~~~K~~~------~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~ei~~lv~~~~~~~~~~~~~~~~~~A~~L 552 (584)
||+.||... +.+++-|+|.. .+....++|+||||||||++|+.++++++|+....+ ......+|..|
T Consensus 404 GDHaYK~N~~Lp~eEQMIsALPDiK~--l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~-----n~~ls~iceeL 476 (542)
T KOG0699|consen 404 GDHAYKKNQELPLEEQMISALPDIKI--LALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAK-----NSSLSEICEEL 476 (542)
T ss_pred hhhhhhcccCCChHHHHhhhccccee--EeecCcccEEEEEccchhhhccHHHHHHHHHHHHhc-----CchHHHHHHHH
Confidence 999999763 57899999973 333346789999999999999999999999876543 35688999999
Q ss_pred hhhhhhcc------ccCCceEEEEecCCc
Q 007933 553 LSEARTLR------TKDNTSIIFLDFDST 575 (584)
Q Consensus 553 v~~A~~~g------s~DNiTvIVv~~~~~ 575 (584)
++.++.-. +.||||||++.|...
T Consensus 477 ~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 477 CDACLAPSTDGDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred HHhhcCCCCCCCCcCCCcceEEEEEeccc
Confidence 99987542 469999999999853
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.6e-33 Score=281.16 Aligned_cols=237 Identities=34% Similarity=0.537 Sum_probs=187.7
Q ss_pred cCccCCCccceeeccCCCCCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhhhh
Q 007933 313 GAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTE 392 (584)
Q Consensus 313 ~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~d 392 (584)
+|.|..|||++++...... .++.+|+|||||||+..|++|++.+.+.+.+.+..... .....+...|+++|+.++
T Consensus 9 ~g~r~~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~~~~ 83 (254)
T cd00143 9 GGDRKTNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT----LSEEDIEEALRKAFLRAD 83 (254)
T ss_pred CCCCCCCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc----cchHHHHHHHHHHHHHHH
Confidence 5889999999998633211 25789999999999999999999999999887765421 112456678899999888
Q ss_pred hhhhcc--------cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhcCCcCCC
Q 007933 393 ASMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLKD 464 (584)
Q Consensus 393 ~~i~~~--------~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r~g~~~qLT~DH~~~~~~E~~RI~~~Gg~i~~ 464 (584)
..+... ..|||++++++.. +. ++++|+||||+|++++++++++|.||++.++.|+.||...++.+..
T Consensus 84 ~~l~~~~~~~~~~~~~gtT~~~~~~~~--~~---l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 158 (254)
T cd00143 84 EEILEEAQDEPDDARSGTTAVVALIRG--NK---LYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSN 158 (254)
T ss_pred HHHHHhhhhccCCCCCCCcEEEEEEEC--CE---EEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEe
Confidence 877543 4566666666643 32 7799999999999999999999999999999999999988876532
Q ss_pred CCeeeec-chhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccc
Q 007933 465 GETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKEN 543 (584)
Q Consensus 465 g~~Rv~G-LalsRslGD~~~K~~~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~ei~~lv~~~~~~~~~~~~~ 543 (584)
. +..+ ..+||+||+..+|. .+.++|++.. ..+. ..+++|+||||||||+++.+++.+++..... ..
T Consensus 159 ~--~~~~~~~~t~~lG~~~~~~---~~~~~~~~~~-~~l~-~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~------~~ 225 (254)
T cd00143 159 G--RVPGVLAVTRALGDFDLKP---GVSAEPDVTV-VKLT-EDDDFLILASDGLWDVLSNQEAVDIVRSELA------KE 225 (254)
T ss_pred C--EEcCceeeccccCCccccC---CEEcCCeEEE-EEeC-CCCcEEEEECCCCeeccChHHHHHHHHHHhc------cc
Confidence 2 3444 78999999987772 2567888863 2332 4688999999999999999999999977311 02
Q ss_pred hHHHHHHHHhhhhhhccccCCceEEEEec
Q 007933 544 STEKIANVLLSEARTLRTKDNTSIIFLDF 572 (584)
Q Consensus 544 ~~~~~A~~Lv~~A~~~gs~DNiTvIVv~~ 572 (584)
+++++|+.|++.|...++.||+|+|++.|
T Consensus 226 ~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 226 DLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred CHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 68999999999999999999999999875
No 9
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=9.9e-34 Score=316.41 Aligned_cols=244 Identities=21% Similarity=0.285 Sum_probs=174.4
Q ss_pred cccccccCChhHHhhcCccCCCccceeeccCCC-----C---CCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhh
Q 007933 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPLP-----G---VDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSL 369 (584)
Q Consensus 298 ~~~vG~asd~~~~~~~G~R~~nED~~~v~~~~~-----~---~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~ 369 (584)
.+.++.+++. |+.|.+|||++.+...+. . .....+|+|||||||+.+|+.||+.+.+.|.+++.+..
T Consensus 374 ~l~~a~~Td~-----G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~ 448 (645)
T PRK14559 374 SLEDAGRTDV-----GRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHW 448 (645)
T ss_pred eEEEEEECCC-----CCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhh
Confidence 4667778875 446999999987653221 1 12356999999999999999999999999988776432
Q ss_pred hhhhhhccCChhHHHHHHhhhhhhhhhcc----------cccccEEEEEEEecCCcchhhcccccCCceeEEe-ecCcee
Q 007933 370 KRERLLSQCDASDVLRDAFFQTEASMNHH----------YEGCTATVLLVWADGNANIFAQCANVGDSACVMN-VDGKQI 438 (584)
Q Consensus 370 ~~e~~~~~~~~~~~L~~af~~~d~~i~~~----------~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~-r~g~~~ 438 (584)
..+ ....+.|+++|..++..+.+. .+|||++++++.. ++ +|++||||||+|++ ++|+++
T Consensus 449 ~~~-----~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~--~~---l~ianVGDSRaYli~r~g~l~ 518 (645)
T PRK14559 449 QDE-----LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQD--TQ---VAVAHVGDSRLYRVTRKGGLE 518 (645)
T ss_pred ccc-----ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEEC--CE---EEEEEecCceEEEEecCCeEE
Confidence 111 123467788888877776431 3577776666643 32 78999999999987 578999
Q ss_pred eecccccccchhhhhhhhhcCCcCCCCCeeeecchhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcc
Q 007933 439 KMSEDHRIASYSERLRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFW 518 (584)
Q Consensus 439 qLT~DH~~~~~~E~~RI~~~Gg~i~~g~~Rv~GLalsRslGD~~~K~~~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLw 518 (584)
+||+||++.+...+.++.... ...|..+.++||+||+...+. .+|++.. +....++++||||||||
T Consensus 519 QLT~DHs~~~~lv~~Gi~~~~-----a~~~p~~~~LTrALG~~~~~~------l~Pdi~~---~~L~~gD~lLLCSDGL~ 584 (645)
T PRK14559 519 QLTVDHEVGQREIQRGVEPQI-----AYARPDAYQLTQALGPRDNSA------IQPDIQF---LEIEEDTLLLLCSDGLS 584 (645)
T ss_pred EeCCCCCHHHHHHHhCCCHHH-----HhcCcccceeeeccCCCCCCc------ccceEEE---EEcCCCCEEEEECCCCC
Confidence 999999998765554432111 111334478999999865542 3687752 33346899999999999
Q ss_pred ee--ccH---HHHHHHHHHHhhhhcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcceee
Q 007933 519 DV--ISV---KKAIQLVVQMREKYSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFRMS 579 (584)
Q Consensus 519 D~--ls~---~ei~~lv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVv~~~~~~~~~ 579 (584)
|+ +.. +++..++.. ..+++++|+.|++.|+.+|++||||+|||++...+..+
T Consensus 585 D~~~ve~~~~~~l~~il~~---------~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p~~~ 641 (645)
T PRK14559 585 DNDLLETHWQTHLLPLLSS---------SANLDQGLNKLIDLANQYNGHDNITAILVRLKVRPQLS 641 (645)
T ss_pred CCcccchHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCCCCC
Confidence 94 443 222333322 35789999999999999999999999999998877654
No 10
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-33 Score=288.99 Aligned_cols=229 Identities=29% Similarity=0.376 Sum_probs=172.9
Q ss_pred CCccceeeccCCCCCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhh-----------------------
Q 007933 318 PMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERL----------------------- 374 (584)
Q Consensus 318 ~nED~~~v~~~~~~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~----------------------- 374 (584)
.-||...+... ..+.+.|+||||||||.++++++++.|..++...+.......+.
T Consensus 84 ~~edrv~~~~s--~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 84 AEEDRVSVAVS--EENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred cccCcceeeee--ccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 35777665432 24678899999999999999999999999888544331111100
Q ss_pred --hccCChhHHHHHHhhhhhhhhhcc------------cccccEEEEEEEecCCcchhhcccccCCceeEEee---cC--
Q 007933 375 --LSQCDASDVLRDAFFQTEASMNHH------------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNV---DG-- 435 (584)
Q Consensus 375 --~~~~~~~~~L~~af~~~d~~i~~~------------~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r---~g-- 435 (584)
.....+.++|.+||.++++.+... .+|+++++.++.... |||||+|||||+|.+ +|
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~-----LyVaN~GDSRAVLG~~~~~~~~ 236 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGD-----LYVANVGDSRAVLGVVENNGSW 236 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCe-----EEEEecCcchhhhceecCCCCe
Confidence 003567899999999999887532 579999988886544 789999999999953 34
Q ss_pred -ceeeecccccccchhhhhhhhhcCC----cCCCCCeeeec-chhhhhhhhhhhhcc------------------ccccC
Q 007933 436 -KQIKMSEDHRIASYSERLRIQETGE----PLKDGETRLCG-LNLARMLGDKFLKQQ------------------DARFS 491 (584)
Q Consensus 436 -~~~qLT~DH~~~~~~E~~RI~~~Gg----~i~~g~~Rv~G-LalsRslGD~~~K~~------------------~~~vs 491 (584)
.++|||.||+..+++|++||....- .+....+|+.| |.+||||||..+|.. .|+++
T Consensus 237 ~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~Pylt 316 (390)
T KOG0700|consen 237 LVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLT 316 (390)
T ss_pred EEEEecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCcee
Confidence 4789999999999999999977642 23344579999 999999999998854 47899
Q ss_pred CCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccchHHHHHHHHhhhhhhcc
Q 007933 492 AEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKENSTEKIANVLLSEARTLR 560 (584)
Q Consensus 492 ~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~ei~~lv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~g 560 (584)
++|.|.. .++. .+|.|+|||||||||+|+++|++++|..+.....+ -+.+|+.|+++|+.+.
T Consensus 317 aeP~i~~-HrL~-p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~p-----d~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 317 AEPSITH-HKLT-PNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFP-----DGNPATHLIRHALGRA 378 (390)
T ss_pred ccceEEE-EEcC-CCCeEEEEeccchhhhcChHHHHHHHHHhhccCCC-----CCCHHHHHHHHHHhhh
Confidence 9999973 2343 46889999999999999999999999886432111 2446677777776544
No 11
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.98 E-value=3.6e-32 Score=273.81 Aligned_cols=233 Identities=37% Similarity=0.560 Sum_probs=187.0
Q ss_pred cCccCCCccceeeccCCCCCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhhhh
Q 007933 313 GAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTE 392 (584)
Q Consensus 313 ~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~d 392 (584)
+|.|..|||++++..+. ..+..+|+|||||||..+|+++++.+.+.+.+........ ...+.+.|++++..++
T Consensus 14 ~~~r~~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 86 (255)
T smart00332 14 QGVRKPMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDE-----LEDVEEALRKAFLKTD 86 (255)
T ss_pred CCCCCCCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccc-----hhHHHHHHHHHHHHHH
Confidence 69999999999886432 1467799999999999999999999988877643322110 1246788999999988
Q ss_pred hhhhcc--------cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhcCCcCCC
Q 007933 393 ASMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLKD 464 (584)
Q Consensus 393 ~~i~~~--------~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r~g~~~qLT~DH~~~~~~E~~RI~~~Gg~i~~ 464 (584)
..+... ..|+|++++++.. +. ++++|+||||+|+++++++.+||+||++.++.|+.||...++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~gtT~~~~~~~~--~~---l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 161 (255)
T smart00332 87 EEILEELESLEEDAGSGSTAVVALISG--NK---LYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN 161 (255)
T ss_pred HHHHHhhhhccCCCCCCccEEEEEEEC--CE---EEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEEC
Confidence 877643 3466666666643 33 7899999999999999999999999999999999999998887765
Q ss_pred CCeeeec-chhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccc
Q 007933 465 GETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKEN 543 (584)
Q Consensus 465 g~~Rv~G-LalsRslGD~~~K~~~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~ei~~lv~~~~~~~~~~~~~ 543 (584)
+ +..+ ..+||++|+..+| +.+.++|++.. ..+ ...+++||||||||||+++.+++.+++.+.... .
T Consensus 162 ~--~~~~~~~lt~~~g~~~~~---~~i~~~p~~~~-~~~-~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~------~ 228 (255)
T smart00332 162 G--RVNGVLALSRAIGDFFLK---PYVSAEPDVTV-VEL-TEKDDFLILASDGLWDVLSNQEVVDIVRKHLSK------S 228 (255)
T ss_pred C--eECCeEecccccCCHhhc---CCeEeeeEEEE-EEe-cCCCcEEEEECCccccCCCHHHHHHHHHHHhhc------C
Confidence 4 6666 8899999998877 34778898863 233 246889999999999999999999999874211 2
Q ss_pred hHHHHHHHHhhhhhhccccCCceEEEE
Q 007933 544 STEKIANVLLSEARTLRTKDNTSIIFL 570 (584)
Q Consensus 544 ~~~~~A~~Lv~~A~~~gs~DNiTvIVv 570 (584)
++.++|+.|++.|..++..||+|+|||
T Consensus 229 ~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 229 DPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred CHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 588999999999999999999999985
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=3e-31 Score=265.13 Aligned_cols=321 Identities=26% Similarity=0.378 Sum_probs=219.7
Q ss_pred cccccccccccccCCCCCCCCCC-CCCCcccC-CCCeEEecccceEEEEEeeccceeccccccccCChhHHhhcCccCCC
Q 007933 242 MGSLNGTLLNSQPINHPDSGSRH-WGKPMELT-SGDIITLGTTSSIHVQITSETVSQIPFGVGVASDPMALRRGAKKLPM 319 (584)
Q Consensus 242 lgS~NGT~vng~~v~~p~~~~r~-~g~~~~L~-~Gd~I~lG~ts~~~~~vs~q~~~~~~~~vG~asd~~~~~~~G~R~~n 319 (584)
+++..|.|+.|---. -....|. ++.|.-|. ..++|.+...-..--.+++..-.++|+-+|||+..++ |+--+|
T Consensus 18 ~~~s~~~~~gg~~~~-~~~~~r~py~rpefl~~s~~ei~~ssdh~~rpvl~~r~~~rmp~~~gyae~ina----gkt~~n 92 (493)
T KOG1323|consen 18 MDVSDGVFIGGFIPS-LIEKQRYPYSRPEFLYFSEEEIALSSDHSVRPVLCPRFPHRMPLYVGYAEAINA----GKTVQN 92 (493)
T ss_pred ecccCCeeccccccc-ccccccCCCCCcccceecHHHhhhccCccccceeccCccccCchhhhHHHHhhc----Cccccc
Confidence 356677777663211 1111222 22232222 3334444333222223455555689999999998765 888899
Q ss_pred ccceeeccC-----------------------C-CC------------CCccceeeeecCCCcchhhhhhhhhhHHHHHH
Q 007933 320 EDVCYYHWP-----------------------L-PG------------VDKFGLFGICDGHGGSAAAKSASEILPKMVAA 363 (584)
Q Consensus 320 ED~~~v~~~-----------------------~-~~------------~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~ 363 (584)
||-..+..- + ++ .-+.++|.+||||.|+.+|-.|++.+.+.|.+
T Consensus 93 edqas~~~l~~~~~~gs~t~~~n~n~~~~~~~l~~g~~~~~k~~~~a~~~~~~~~slfdghags~~avvAsrll~~hI~~ 172 (493)
T KOG1323|consen 93 EDQASAKMLVLTQHQGSETRKRNSNENDDDPMLTPGGDDTVKSSMFAPRADGALFSLFDGHAGSAVAVVASRLLHRHIKE 172 (493)
T ss_pred cccccceEEEEecccCccccCCCCCccccCcCCCCCCCcchhhcccCCCCcceeeeeecCCCcchHHHHHHHHHHHhhhH
Confidence 998665310 0 00 01356999999999999999999999999987
Q ss_pred Hhhhhhhh------------------------------h-hhhccCChhHHHHHHhhhhhhhhhcc------cccccEEE
Q 007933 364 ILSDSLKR------------------------------E-RLLSQCDASDVLRDAFFQTEASMNHH------YEGCTATV 406 (584)
Q Consensus 364 ~l~~~~~~------------------------------e-~~~~~~~~~~~L~~af~~~d~~i~~~------~~GsTatv 406 (584)
.+.+-... | ++-...-+..+|..||+++|++|... ..||||.+
T Consensus 173 ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViGAlEsAFqemDeqiarer~~~~~~GGCtalv 252 (493)
T KOG1323|consen 173 QLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIGALESAFQEMDEQIARERQVWRLPGGCTALV 252 (493)
T ss_pred HHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEE
Confidence 66532111 1 11112235579999999999998764 56899888
Q ss_pred EEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhcCC--------------------------
Q 007933 407 LLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGE-------------------------- 460 (584)
Q Consensus 407 vli~~~~~~~~~l~vaNVGDSRa~l~r~g~~~qLT~DH~~~~~~E~~RI~~~Gg-------------------------- 460 (584)
+++...+ +|+||.|||||+++++++++.||.+.+|. .||+|++..+.
T Consensus 253 vi~llGK-----lYvaNAGDsRAIlVrndeirplS~efTPe--tERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgq 325 (493)
T KOG1323|consen 253 VIVLLGK-----LYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQ 325 (493)
T ss_pred eeeeccc-----eEEccCCCceEEEEecCCeeecccccCcH--HHHHHHHHHhhcChHhhcccccceecccccChhhhcc
Confidence 8776554 89999999999999999999999999875 67888865431
Q ss_pred ------------------------cCCC---CCeeeec-chhhhhhhhhhhhccc------cccCCCCCccceeeec---
Q 007933 461 ------------------------PLKD---GETRLCG-LNLARMLGDKFLKQQD------ARFSAEPYISPVVHID--- 503 (584)
Q Consensus 461 ------------------------~i~~---g~~Rv~G-LalsRslGD~~~K~~~------~~vs~eP~I~~~~~i~--- 503 (584)
++-. ...|+.+ +.+||.|||+.+|..+ +.+++.|+|+ +..+.
T Consensus 326 rvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~-V~dl~q~e 404 (493)
T KOG1323|consen 326 RVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVR-VYDLRQYE 404 (493)
T ss_pred eeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecCCcccchhhhcCCeeE-EEehhhhc
Confidence 0000 1236677 8999999999999765 4566666665 22222
Q ss_pred ccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccchHHHHHHHHhhhhhh-------------ccccCCceEEEE
Q 007933 504 QASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKENSTEKIANVLLSEART-------------LRTKDNTSIIFL 570 (584)
Q Consensus 504 ~~~ddflVLaSDGLwD~ls~~ei~~lv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~-------------~gs~DNiTvIVv 570 (584)
...||.+|||||||||+++++|++.+|.++.....+....-...+|+.|+..|.. .|+-|+|||.||
T Consensus 405 ~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVI 484 (493)
T KOG1323|consen 405 HLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVI 484 (493)
T ss_pred cCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEE
Confidence 2367899999999999999999999999876655433233456788889988732 356799999999
Q ss_pred ecCCc
Q 007933 571 DFDST 575 (584)
Q Consensus 571 ~~~~~ 575 (584)
.+...
T Consensus 485 PL~~~ 489 (493)
T KOG1323|consen 485 PLKYC 489 (493)
T ss_pred eccCC
Confidence 88654
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.82 E-value=1.5e-19 Score=182.20 Aligned_cols=211 Identities=19% Similarity=0.249 Sum_probs=143.7
Q ss_pred CCccceeeccCCCCCCccceeeeecCCCcchhhhh----hhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhhhhh
Q 007933 318 PMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKS----ASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEA 393 (584)
Q Consensus 318 ~nED~~~v~~~~~~~~~~~lfgVfDGhGG~~aa~~----as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~d~ 393 (584)
.-||+|++..+ ....+.|||||+|||+-=.+ -|+.|+....+...... ....++..+|.+||.++-.
T Consensus 90 ~GEDa~Fvss~----~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~-----~~~~~P~~lL~~ay~~l~~ 160 (330)
T KOG1379|consen 90 GGEDAWFVSSN----PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSD-----FNPSDPVNLLEKAYAELKS 160 (330)
T ss_pred CCCcceeeccC----cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccc-----cCCCChHHHHHHHHHHHhh
Confidence 46999998632 45678999999999864322 35556666665555433 2346889999999988765
Q ss_pred hhhcccccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccc--cchhhhhhhhhcCCcCCCCCeeeec
Q 007933 394 SMNHHYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRI--ASYSERLRIQETGEPLKDGETRLCG 471 (584)
Q Consensus 394 ~i~~~~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r~g~~~qLT~DH~~--~~~~E~~RI~~~Gg~i~~g~~Rv~G 471 (584)
+-.....++||+++.+.....+ |++||+|||...++|+|++++-|..+.. ..+
T Consensus 161 ~~~~~vGSSTAcI~~l~~~~~~---Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~P---------------------- 215 (330)
T KOG1379|consen 161 QKVPIVGSSTACILALDRENGK---LHTANLGDSGFLVVREGKVVFRSPEQQHYFNTP---------------------- 215 (330)
T ss_pred cCCCCCCcceeeeeeeecCCCe---EEEeeccCcceEEEECCEEEEcCchheeccCCc----------------------
Confidence 4333346677777776532333 7899999999999999999988875421 111
Q ss_pred chhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccchHHHHHHH
Q 007933 472 LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKENSTEKIANV 551 (584)
Q Consensus 472 LalsRslGD~~~K~~~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~ei~~lv~~~~~~~~~~~~~~~~~~A~~ 551 (584)
++++ ++-..+ ...+...|+-...+.+....+|.||||||||||+|.+++|.+++.....+. ..+++..|+.
T Consensus 216 yQLs--~~p~~~---~~~~~d~p~~ad~~~~~v~~GDvIilATDGlfDNl~e~~Il~il~~~~~~~----~~~lq~~A~~ 286 (330)
T KOG1379|consen 216 YQLS--SPPEGY---SSYISDVPDSADVTSFDVQKGDVIILATDGLFDNLPEKEILSILKGLDARG----NLDLQVTAQK 286 (330)
T ss_pred eeec--cCCccc---cccccCCccccceEEEeccCCCEEEEecccccccccHHHHHHHHHHhhccc----cccHHHHHHH
Confidence 1111 000000 011334577766666777789999999999999999999999998764431 3567788888
Q ss_pred Hhhhhhhc-----------------------cccCCceEEEEe
Q 007933 552 LLSEARTL-----------------------RTKDNTSIIFLD 571 (584)
Q Consensus 552 Lv~~A~~~-----------------------gs~DNiTvIVv~ 571 (584)
|++.|... |..|+|||||..
T Consensus 287 ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 287 IAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred HHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 87777332 336999999864
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=8.5e-18 Score=188.39 Aligned_cols=249 Identities=17% Similarity=0.255 Sum_probs=189.3
Q ss_pred ccccccccCChhHHhhcCccCCCccceeeccCCCCCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhc
Q 007933 297 IPFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLS 376 (584)
Q Consensus 297 ~~~~vG~asd~~~~~~~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~~~ 376 (584)
.-+.+|++... |.|.++==+.....++. .+..+.||+|||-+......+....+..++.+.++...
T Consensus 520 ~~~t~Gv~~~~------gqrnk~c~~~~~v~nf~-~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~------- 585 (1081)
T KOG0618|consen 520 FLWTYGVAGVS------GQRNKVCSRAVWVENFF-LNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYG------- 585 (1081)
T ss_pred eheeeccchhc------ccccchhhhhhhhhhcc-cCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhcc-------
Confidence 34557777654 55544432222222222 23456899999988887777777777777766554432
Q ss_pred cCChhHHHHHHhhhhhhhhhcc--cccccEEEEEEEecC---CcchhhcccccCCceeEEeecCceeeecccc-cccchh
Q 007933 377 QCDASDVLRDAFFQTEASMNHH--YEGCTATVLLVWADG---NANIFAQCANVGDSACVMNVDGKQIKMSEDH-RIASYS 450 (584)
Q Consensus 377 ~~~~~~~L~~af~~~d~~i~~~--~~GsTatvvli~~~~---~~~~~l~vaNVGDSRa~l~r~g~~~qLT~DH-~~~~~~ 450 (584)
+-.+.|+.+|...+.++... ..|..++.+.|..+. ....++++||||+|.++++++|+..++|+-. ....++
T Consensus 586 --~et~~mr~~fl~~~rklg~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~e 663 (1081)
T KOG0618|consen 586 --NETEQMRNTFLRLNRKLGEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDRE 663 (1081)
T ss_pred --ChHHHHHHHHHHHhhhhhhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHH
Confidence 22344999999999888654 556667777775543 2234578999999999999999999988875 444889
Q ss_pred hhhhhhhcCCcCC-CCCeeeec-chhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHH
Q 007933 451 ERLRIQETGEPLK-DGETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQ 528 (584)
Q Consensus 451 E~~RI~~~Gg~i~-~g~~Rv~G-LalsRslGD~~~K~~~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~ei~~ 528 (584)
|.+||...+|++. ++ +++| ...||++|-+.... .|-+.|+|... .+. ..|+|+|+|+-+||++|+-+++++
T Consensus 664 E~~RI~~~~g~i~ed~--k~ngvt~~tR~iG~~~l~P---~v~p~Phv~~~-~Lt-~qdE~LIvgn~~lW~~Lsid~a~~ 736 (1081)
T KOG0618|consen 664 EYKRIVDSKGFITEDN--KLNGVTSSTRAIGPFSLFP---HVLPDPHVSVV-ILT-EQDEFLIVGNKQLWSVLSIDTAVD 736 (1081)
T ss_pred HHHHHHHhcCeecCCC--eeeceeeeeeecccccccc---cccCCCceeeE-ecc-cCceEEEEcchHHhhhccHHHHHH
Confidence 9999999999997 44 8999 78999999876653 48889999843 333 468999999999999999999999
Q ss_pred HHHHHhhhhcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcce
Q 007933 529 LVVQMREKYSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFR 577 (584)
Q Consensus 529 lv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVv~~~~~~~ 577 (584)
.++. ..++-.||++|++.|...|+.||++|+||++.....
T Consensus 737 ~vRn---------~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~~~~ 776 (1081)
T KOG0618|consen 737 AVRN---------VEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNHLEE 776 (1081)
T ss_pred HHhc---------CCchHHHHHHHHHHHHhcccccCeeEEEEEeecchh
Confidence 9985 578999999999999999999999999999987655
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.62 E-value=9.3e-16 Score=150.89 Aligned_cols=179 Identities=22% Similarity=0.291 Sum_probs=93.3
Q ss_pred cCccCCCccceeeccCCCCCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhh-h
Q 007933 313 GAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQ-T 391 (584)
Q Consensus 313 ~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~-~ 391 (584)
.|++..|||++.+.. .+...+++||||+||...++.+|+.+++.+.+.+......+.......+...+.+.... +
T Consensus 6 ~~~~~~nqD~~~~~~----~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (212)
T PF13672_consen 6 RGRGAPNQDAFGIRT----DDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIV 81 (212)
T ss_dssp -TTSSS--EEEEEE-----TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCEEeee----CCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 478899999998642 24556779999999999999999999999888777654332211011122222222221 1
Q ss_pred ----hh---hhhcccccccEEEEEEEecCCcchhhcccccCCceeEE-eecCceeeecccccccchhhhhhhhhcCCcCC
Q 007933 392 ----EA---SMNHHYEGCTATVLLVWADGNANIFAQCANVGDSACVM-NVDGKQIKMSEDHRIASYSERLRIQETGEPLK 463 (584)
Q Consensus 392 ----d~---~i~~~~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l-~r~g~~~qLT~DH~~~~~~E~~RI~~~Gg~i~ 463 (584)
.. .......+||.+++++ .++. ++++|+||||+|+ .++|++..++.||+.....+
T Consensus 82 ~~~~~~~~~~~~~~~~~tTl~~~v~--~~~~---~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~~~------------ 144 (212)
T PF13672_consen 82 RAFQSAKQADLELRDYGTTLLALVI--DPDK---VYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYPNQ------------ 144 (212)
T ss_dssp ----HHHHHSGGGTT-EE-EEEEEE--ETTE---EEEEEESS-EEEEEEETTEEEE-S---BHHHHHC------------
T ss_pred hhhhhhhhccccccccCceEEEEEE--ECCE---EEEEEECCCeEEEEECCCEEEEcCCCccchhhhh------------
Confidence 01 1111133455444443 3433 6789999999965 68999999999996332211
Q ss_pred CCCeeeecchhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHH-HHHHHHHH
Q 007933 464 DGETRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKK-AIQLVVQM 533 (584)
Q Consensus 464 ~g~~Rv~GLalsRslGD~~~K~~~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~e-i~~lv~~~ 533 (584)
++.+... .+.+.+. ...+....++.|+|||||||+.+...+ +..++.+.
T Consensus 145 -----------~~~~~~~---------~~~~~~~-~~~~~~~~~d~ilL~SDG~~~~l~~~~~~~~~l~~~ 194 (212)
T PF13672_consen 145 -----------TRSLTGD---------DPEPDVQ-YGSIPLEEGDVILLCSDGVWDNLRSYEDLEQFLKDL 194 (212)
T ss_dssp -----------TTSCCHH---------CCCTETE-EEEEE--TT-EEEEE-HHHHTTS-HHHHHHHH----
T ss_pred -----------hhccCcc---------ccccCCe-EEEEEcCCCCEEEEECcCccccCCCHHHHHHHhhhc
Confidence 1111110 0112221 112333468899999999999998665 55665543
No 16
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.61 E-value=4.9e-16 Score=125.55 Aligned_cols=68 Identities=38% Similarity=0.728 Sum_probs=61.5
Q ss_pred eeecCcCCCcceeeccccccceeEEecCCCCceeeEEecccccccccccccCCCCCCCCCCCCCCcccCCCCeEEec
Q 007933 204 LTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLG 280 (584)
Q Consensus 204 ~~iGR~~~~di~i~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~v~~p~~~~r~~g~~~~L~~Gd~I~lG 280 (584)
++|||.+.|||+++++.|||+||.|.++.+ +.|+|+|++|+|||||||+++.+ +.+++|.+||+|++|
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~-~~~~i~d~~s~ngt~vng~~l~~--------~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD-GQFYIEDLGSTNGTFVNGQRLGP--------GEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT-EEEEEEESSSSS-EEETTEEESS--------TSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece-eeEEEEeCCCCCcEEECCEEcCC--------CCEEECCCCCEEEcC
Confidence 589999999999999999999999999876 58999999999999999999994 567999999999998
No 17
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.51 E-value=2.6e-13 Score=131.55 Aligned_cols=172 Identities=20% Similarity=0.151 Sum_probs=110.6
Q ss_pred CccceeeccCCCCCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhhhhhhhhcc
Q 007933 319 MEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMNHH 398 (584)
Q Consensus 319 nED~~~v~~~~~~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~d~~i~~~ 398 (584)
.-|.|.+... .+...+|+|+||||+...|.+++..+...+.+.+... ..+.+++ ..+++.+...
T Consensus 17 ~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~---------~~~~~~l----~~~n~~l~~~ 80 (193)
T smart00331 17 GGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG---------ISLSQIL----ERLNRAIYEN 80 (193)
T ss_pred CccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC---------CCHHHHH----HHHHHHHHhc
Confidence 4577765422 2346789999999998888898998888887755431 1223333 3334333332
Q ss_pred ---cccccEEEEEEEecCCcchhhcccccCCceeEEee-cCceeeecccccccchhhhhhhhhcCCcCCCCCeeeecchh
Q 007933 399 ---YEGCTATVLLVWADGNANIFAQCANVGDSACVMNV-DGKQIKMSEDHRIASYSERLRIQETGEPLKDGETRLCGLNL 474 (584)
Q Consensus 399 ---~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r-~g~~~qLT~DH~~~~~~E~~RI~~~Gg~i~~g~~Rv~GLal 474 (584)
..|+|++++.+-...++ ++++|+||+|+|+++ ++..++++.+.. +
T Consensus 81 ~~~~~~~T~~~~~id~~~~~---l~~~~~Gd~~~~~~~~~~~~~~~~~~~~----------------------~------ 129 (193)
T smart00331 81 GEDGMFATLFLALYDFAGGT---LSYANAGHSPPYLLRADGGLVEDLDDLG----------------------A------ 129 (193)
T ss_pred CCCCcEEEEEEEEEECCCCE---EEEEeCCCCceEEEECCCCeEEEcCCCC----------------------c------
Confidence 35666665555333333 568999999999998 666666666521 1
Q ss_pred hhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccchHHHHHHHHhh
Q 007933 475 ARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKENSTEKIANVLLS 554 (584)
Q Consensus 475 sRslGD~~~K~~~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~ei~~lv~~~~~~~~~~~~~~~~~~A~~Lv~ 554 (584)
.+|... ..++++. .+....+|.|+|+||||||.++.+++.+++.+.. ..+++++++.+.+
T Consensus 130 --~lG~~~--------~~~~~~~---~~~l~~gd~l~l~TDGl~e~~~~~~l~~~l~~~~-------~~~~~~~~~~i~~ 189 (193)
T smart00331 130 --PLGLEP--------DVEVDVR---ELTLEPGDLLLLYTDGLTEARNPERLEELLEELL-------GSPPAEIAQRILE 189 (193)
T ss_pred --eeeeCC--------CCcceeE---EEeeCCCCEEEEECCCccccCChHHHHHHHHHhc-------CCCHHHHHHHHHH
Confidence 222110 0112222 3344478999999999999999999998887642 3467888887777
Q ss_pred hhh
Q 007933 555 EAR 557 (584)
Q Consensus 555 ~A~ 557 (584)
.+.
T Consensus 190 ~~~ 192 (193)
T smart00331 190 ELL 192 (193)
T ss_pred HHh
Confidence 653
No 18
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.39 E-value=1.3e-12 Score=112.86 Aligned_cols=89 Identities=39% Similarity=0.673 Sum_probs=80.6
Q ss_pred EEEEEeecCCCceeeeeec-cCCCCcceeecCcCCC-cceeeccccccceeEEecCC-CCceeeEEeccccccccccccc
Q 007933 178 LSLEVVSGPSRGIRCSVQS-ANASRLPLTLGRVSPS-DVLLKDSEVSGKHALINWNP-NKLKWELVDMGSLNGTLLNSQP 254 (584)
Q Consensus 178 ~~L~v~~G~~~g~~~~l~~-~~~~~~~~~iGR~~~~-di~i~d~~VSr~Ha~I~~~~-~~~~~~l~DlgS~NGT~vng~~ 254 (584)
+.|.+..|+..+..+.|.. . .++|||.+.| ++.+++..|||.||.|.+.. + .|++.|+.|.||||||+++
T Consensus 2 ~~L~~~~~~~~~~~~~l~~~~-----~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~--~~~~~~~~s~~g~~vn~~~ 74 (102)
T cd00060 2 PRLVVLSGDASGRRYYLDPGG-----TYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG--GVVLIDLGSTNGTFVNGQR 74 (102)
T ss_pred eEEEEecCCCceeEEEECCCC-----eEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC--CEEEEECCCCCCeEECCEE
Confidence 5688888887888999998 5 7999999999 99999999999999999998 5 7999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCeEEecc
Q 007933 255 INHPDSGSRHWGKPMELTSGDIITLGT 281 (584)
Q Consensus 255 v~~p~~~~r~~g~~~~L~~Gd~I~lG~ 281 (584)
+.. +.+..|.+||.|.+|.
T Consensus 75 ~~~--------~~~~~l~~gd~i~ig~ 93 (102)
T cd00060 75 VSP--------GEPVRLRDGDVIRLGN 93 (102)
T ss_pred CCC--------CCcEECCCCCEEEECC
Confidence 884 3468999999999995
No 19
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.38 E-value=1e-12 Score=141.19 Aligned_cols=94 Identities=33% Similarity=0.526 Sum_probs=81.5
Q ss_pred EEEEeec----CCCceeeeeeccCCCCcceeecCcCCCcceeeccc--cccceeEEecCCCCceeeEEecccccccccc-
Q 007933 179 SLEVVSG----PSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSE--VSGKHALINWNPNKLKWELVDMGSLNGTLLN- 251 (584)
Q Consensus 179 ~L~v~~G----~~~g~~~~l~~~~~~~~~~~iGR~~~~di~i~d~~--VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vn- 251 (584)
+|.|+.. +..+..+.+... .++|||.+.||++|+|+. ||++||+|.+.++ .|+|+|+ |+||||||
T Consensus 2 ~L~v~n~~~l~~g~~~~~~f~~~-----~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~~g--~~~l~Dl-StNGT~VN~ 73 (396)
T TIGR03354 2 VLTVLNAHQLTPGIAAQKTFGTN-----GGTIGRSEDCDWVLPDPERHVSGRHARIRYRDG--AYLLTDL-STNGVFLNG 73 (396)
T ss_pred EEEEeccccCCCCcceEEEECCC-----CEEEecCCCCCEEeCCCCCCcchhhcEEEEECC--EEEEEEC-CCCCeEECC
Confidence 5667744 335668888887 799999999999999988 9999999999987 9999999 99999999
Q ss_pred -cccCCCCCCCCCCCCCCcccCCCCeEEecccceEEEE
Q 007933 252 -SQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (584)
Q Consensus 252 -g~~v~~p~~~~r~~g~~~~L~~Gd~I~lG~ts~~~~~ 288 (584)
|.++.. +.++.|.+||+|++|.+.+++..
T Consensus 74 sg~~l~~--------~~~~~L~~GD~I~iG~~~lrv~~ 103 (396)
T TIGR03354 74 SGSPLGR--------GNPVRLEQGDRLRLGDYEIRVSL 103 (396)
T ss_pred CCCCCCC--------CCceEcCCCCEEEECCEEEEEEe
Confidence 888884 55689999999999999988754
No 20
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.35 E-value=1.4e-12 Score=147.73 Aligned_cols=98 Identities=20% Similarity=0.254 Sum_probs=79.8
Q ss_pred cceEEEEEeecCCCc-eeeeeeccCCCCcceeecCcCCCcc-----eeeccccccceeEEecCCCCceeeEEeccccccc
Q 007933 175 RSCLSLEVVSGPSRG-IRCSVQSANASRLPLTLGRVSPSDV-----LLKDSEVSGKHALINWNPNKLKWELVDMGSLNGT 248 (584)
Q Consensus 175 ~~~~~L~v~~G~~~g-~~~~l~~~~~~~~~~~iGR~~~~di-----~i~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT 248 (584)
...|.|......... ..++|..+. ..+++|||.+.||+ +|+|+.||++||+|.+.++ .|+|+||+|+|||
T Consensus 531 ~~~w~l~~~~~~~~~~~~~~l~~~~--~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~--~~~~~Dl~S~nGT 606 (668)
T PLN02927 531 KGEWYLIPHGDDCCVSETLCLTKDE--DQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDG--AFFLMDLRSEHGT 606 (668)
T ss_pred cCCeEEEecCCCCcccceeeeecCC--CCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECC--EEEEEECCCCCcc
Confidence 346888887554433 457773321 22899999999996 9999999999999999988 9999999999999
Q ss_pred cccccc---CCCCCCCCCCCCCCcccCCCCeEEeccc
Q 007933 249 LLNSQP---INHPDSGSRHWGKPMELTSGDIITLGTT 282 (584)
Q Consensus 249 ~vng~~---v~~p~~~~r~~g~~~~L~~Gd~I~lG~t 282 (584)
|||+.+ +..| |+.+++|++||+|++|+.
T Consensus 607 ~v~~~~~~r~~~~------p~~~~~l~~~d~I~~g~~ 637 (668)
T PLN02927 607 YVTDNEGRRYRAT------PNFPARFRSSDIIEFGSD 637 (668)
T ss_pred EEeCCCCceEecC------CCCceEeCCCCEEEeCCC
Confidence 998766 5532 567899999999999995
No 21
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.32 E-value=4.3e-11 Score=138.80 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=125.1
Q ss_pred cccccccCChhHHhhcCccCCCccceeeccCCCCCCccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhcc
Q 007933 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQ 377 (584)
Q Consensus 298 ~~~vG~asd~~~~~~~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~~~~ 377 (584)
...+|++.-+ .+.+..+.|.|.+... .+...+++|+||+|+...|..+|..+.+.+.+.+....
T Consensus 551 ~~~~g~a~~~-----k~g~~vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~-------- 614 (764)
T TIGR02865 551 HVSTGVARAA-----KDGELVSGDSYSFGKL---SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGF-------- 614 (764)
T ss_pred eehhhHHHhc-----CCCCcccCceEEEEEE---CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCC--------
Confidence 3445555432 3456678999876421 23456889999999777777888888887766554321
Q ss_pred CChhHHHHHHhhhhhhhhhc---ccccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhh
Q 007933 378 CDASDVLRDAFFQTEASMNH---HYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLR 454 (584)
Q Consensus 378 ~~~~~~L~~af~~~d~~i~~---~~~GsTatvvli~~~~~~~~~l~vaNVGDSRa~l~r~g~~~qLT~DH~~~~~~E~~R 454 (584)
+... ++..++..+.. ....+|+.++.+-....+ +.++|+|+++.|+.+++++.+++..+.|
T Consensus 615 -~~~~----ai~~lN~~L~~~~~~~~faTl~l~~IDl~~g~---~~~~~aG~~p~~i~r~~~v~~i~s~~lP-------- 678 (764)
T TIGR02865 615 -DREV----AIKTVNSILSLRSTDEKFSTLDLSVIDLYTGQ---AEFVKVGAVPSFIKRGAKVEVIRSSNLP-------- 678 (764)
T ss_pred -CHHH----HHHHHHHHHHhCCCCCeEEEEEEEEEECCCCe---EEEEecCCCceEEEECCEEEEecCCCce--------
Confidence 1222 22223332221 123444444444333333 5679999999999999988877654322
Q ss_pred hhhcCCcCCCCCeeeecchhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHH-----HHHH
Q 007933 455 IQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKK-----AIQL 529 (584)
Q Consensus 455 I~~~Gg~i~~g~~Rv~GLalsRslGD~~~K~~~~~vs~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~e-----i~~l 529 (584)
.|+ ..++++.. ......++|+++++|||+||..+..+ +.++
T Consensus 679 ---------------lGi------------------l~~~~~~~-~~~~L~~GD~Lll~SDGv~E~~~~~~~~~~~l~~~ 724 (764)
T TIGR02865 679 ---------------IGI------------------LDEVDVEL-VRKKLKNGDLIVMVSDGVLEGEKEVEGKVLWLVRK 724 (764)
T ss_pred ---------------eEe------------------ccCCccce-EEEEeCCCCEEEEECCCCCcCCcccccHHHHHHHH
Confidence 111 11222221 13344578999999999999886533 4444
Q ss_pred HHHHhhhhcccccchHHHHHHHHhhhhhhcc---ccCCceEEEEec
Q 007933 530 VVQMREKYSADKENSTEKIANVLLSEARTLR---TKDNTSIIFLDF 572 (584)
Q Consensus 530 v~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~g---s~DNiTvIVv~~ 572 (584)
+... ...+++++++.|++.|.... ..||+|++++++
T Consensus 725 l~~~-------~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 725 LKET-------NTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHhc-------CCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 4331 13578999999999987543 479999999986
No 22
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=99.32 E-value=3.8e-12 Score=139.78 Aligned_cols=123 Identities=20% Similarity=0.301 Sum_probs=102.3
Q ss_pred cCccCCccchhhccccceEEEEEeecCCCceeeeeeccCCCCcceeecCcCCCcceeeccccccceeEEecCCCC-----
Q 007933 160 IDRFPEFLPKAIADQRSCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNK----- 234 (584)
Q Consensus 160 ~~~~~~~~p~~~~~~~~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~iGR~~~~di~i~d~~VSr~Ha~I~~~~~~----- 234 (584)
..+..+.+|++..++...+.|+++++..+-....|.... .++|||...||+.+.++.|||.||.+.+...+
T Consensus 139 a~~~py~vppw~~P~~~~~~lEvlKeg~iiet~~l~~~~----~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~ 214 (793)
T KOG1881|consen 139 AAAAPYEVPPWSGPPAAIFQLEVLKEGAIIETEDLKGAA----ACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPC 214 (793)
T ss_pred CCCCcccCCCCCCCcccchhhhhhccCceeeeeecccce----eEEecccCCCccccccCcccccceeeeccCCCCCccc
Confidence 335678888888888888999999887766666666553 79999999999999999999999999986543
Q ss_pred ----ceeeEEecccccccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEEEEEeeccc
Q 007933 235 ----LKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQITSETV 294 (584)
Q Consensus 235 ----~~~~l~DlgS~NGT~vng~~v~~p~~~~r~~g~~~~L~~Gd~I~lG~ts~~~~~vs~q~~ 294 (584)
-+|+|+|||||+|||+|..++.. +. -..++.|+++++|..++++....+.+.
T Consensus 215 ~s~~~g~~i~dlgsThgt~~NK~rvpp-----k~---yir~~Vg~v~~fggsTrl~i~Qgp~eD 270 (793)
T KOG1881|consen 215 ASNGEGWYIYDLGSTHGTFLNKDRVPP-----KV---YIRDRVGHVARFGGSTRLYIFQGPEED 270 (793)
T ss_pred cCCCCceEEeeccccccceeccccCCC-----cc---hhhhhHHHHHHhcCceEEEEeeCCCcC
Confidence 34999999999999999999995 23 378999999999999998866655544
No 23
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.28 E-value=6.8e-12 Score=121.58 Aligned_cols=70 Identities=37% Similarity=0.544 Sum_probs=66.8
Q ss_pred ceeecCcCCCcceeeccccccceeEEecCCCCceeeEEecccccccccccccCCCCCCCCCCCCCCcccCCCCeEEeccc
Q 007933 203 PLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTT 282 (584)
Q Consensus 203 ~~~iGR~~~~di~i~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~v~~p~~~~r~~g~~~~L~~Gd~I~lG~t 282 (584)
.++|||+++++++++|..|||+||.|.++++ .|+++|++|+|||||||.++.. ...+.+||.|++|.+
T Consensus 90 ~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~--~~~~~d~~S~nGt~vn~~~v~~----------~~~l~~gd~i~i~~~ 157 (191)
T COG1716 90 VTTIGRDPDNDIVLDDDVVSRRHAELRREGN--EVFLEDLGSTNGTYVNGEKVRQ----------RVLLQDGDVIRLGGT 157 (191)
T ss_pred eEEeccCCCCCEEcCCCccccceEEEEEeCC--ceEEEECCCCcceEECCeEccC----------cEEcCCCCEEEECcc
Confidence 6899999999999999999999999999999 9999999999999999999994 388999999999999
Q ss_pred ce
Q 007933 283 SS 284 (584)
Q Consensus 283 s~ 284 (584)
..
T Consensus 158 ~~ 159 (191)
T COG1716 158 LA 159 (191)
T ss_pred ce
Confidence 88
No 24
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.16 E-value=2.3e-11 Score=92.62 Aligned_cols=51 Identities=37% Similarity=0.625 Sum_probs=46.8
Q ss_pred eeecCcC-CCcceeeccccccceeEEecCCCCceeeEEecccccccccccccC
Q 007933 204 LTLGRVS-PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPI 255 (584)
Q Consensus 204 ~~iGR~~-~~di~i~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~v 255 (584)
++|||.+ .|+++++++.||+.||+|.++.+ +.|+|.|++|+|||||||+++
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~-~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGG-GRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCC-CeEEEEECCCCCCeeECCEEC
Confidence 4799999 99999999999999999999887 149999999999999999875
No 25
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.08 E-value=1.2e-09 Score=105.65 Aligned_cols=179 Identities=15% Similarity=0.190 Sum_probs=101.6
Q ss_pred ccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhhhhhhhhcccccccEEEEEEEecC
Q 007933 334 KFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMNHHYEGCTATVLLVWADG 413 (584)
Q Consensus 334 ~~~lfgVfDGhGG~~aa~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~d~~i~~~~~GsTatvvli~~~~ 413 (584)
...++.|+|+.|..-.|.+.+..+...+....... .++.+++......+...+......+|++++.+-...
T Consensus 3 ~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~---------~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~ 73 (193)
T PF07228_consen 3 GRYFIIVGDVSGHGVSAALLSAALASAIRELLDEG---------LDPEELLEALNRRLYRDLKGDNRYATACYAIIDPET 73 (193)
T ss_dssp TEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT---------TSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEETTT
T ss_pred CEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHHHhhhccccceEEEEEecccc
Confidence 34578999999966566666666666666554321 123344443333332222222234444444443333
Q ss_pred CcchhhcccccCCceeEEeecCc--eeeecccccccchhhhhhhhhcCCcCCCCCeeeecchhhhhhhhhhhhccccccC
Q 007933 414 NANIFAQCANVGDSACVMNVDGK--QIKMSEDHRIASYSERLRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARFS 491 (584)
Q Consensus 414 ~~~~~l~vaNVGDSRa~l~r~g~--~~qLT~DH~~~~~~E~~RI~~~Gg~i~~g~~Rv~GLalsRslGD~~~K~~~~~vs 491 (584)
+. ++++|+|+++++++++++ ...+.....| +| +.
T Consensus 74 ~~---l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~-------------------------------lG----------~~ 109 (193)
T PF07228_consen 74 GT---LTYANAGHPPPLLLRPGGREIEQLESEGPP-------------------------------LG----------IF 109 (193)
T ss_dssp TE---EEEEEESSSEEEEEETTCTEEEEETCSSBB-------------------------------CS----------SS
T ss_pred eE---EEEeCCCCCCEEEEeccccceeecccCccc-------------------------------ee----------ee
Confidence 32 568999999999999843 2233221111 11 00
Q ss_pred CCCCccceeeecccccceeeeccCCcceeccHHH-------HHHHHHHHhhhhcccccchHHHHHHHHhhhhhhc---cc
Q 007933 492 AEPYISPVVHIDQASKAFALLASDGFWDVISVKK-------AIQLVVQMREKYSADKENSTEKIANVLLSEARTL---RT 561 (584)
Q Consensus 492 ~eP~I~~~~~i~~~~ddflVLaSDGLwD~ls~~e-------i~~lv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~---gs 561 (584)
.+..+. ...+....++.|+|+||||+|....+. ..+++.+. ...+++++++.|++.+... ..
T Consensus 110 ~~~~~~-~~~~~l~~gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ 181 (193)
T PF07228_consen 110 EDIDYQ-EQEIQLEPGDRLLLYTDGLFEALNEDGEFFGEERLLELLDEN-------RGLSPQEIIDALLEAIDRFGKGPL 181 (193)
T ss_dssp CTTCEE-EEEEE--TTEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH-------TTS-HHHHHHHHHHHHHHHTTSST
T ss_pred cccccc-ceEEEeccccEEEEeCCChhhccCCccchhHHHHHHHHHhhc-------cCCCHHHHHHHHHHHHHHhcCCCC
Confidence 111121 123445579999999999999985443 23444321 1467899999999988763 47
Q ss_pred cCCceEEEEecC
Q 007933 562 KDNTSIIFLDFD 573 (584)
Q Consensus 562 ~DNiTvIVv~~~ 573 (584)
.||+|+++++++
T Consensus 182 ~DD~tvl~~~~~ 193 (193)
T PF07228_consen 182 RDDITVLVIRRQ 193 (193)
T ss_dssp SS-EEEEEEEE-
T ss_pred CCceEEEEEEEC
Confidence 899999999874
No 26
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.06 E-value=7.9e-11 Score=114.32 Aligned_cols=130 Identities=21% Similarity=0.229 Sum_probs=98.4
Q ss_pred CCCCCCCcccccccccCccCCcc-----chhhccccceEEEEEeecCCCceeeeeeccCCCCcceeecCcC-CCcceeec
Q 007933 145 GGQEDQSPNLKLGLGIDRFPEFL-----PKAIADQRSCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVS-PSDVLLKD 218 (584)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~-----p~~~~~~~~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~iGR~~-~~di~i~d 218 (584)
+..++......+....+.+.+.+ |+.+..|...|.|...++...+....++..+ .+++||.. -+||.|++
T Consensus 136 ke~p~f~lsg~l~E~tn~~~gv~v~y~eppearkP~kRwrLy~fk~~e~l~~l~iHrqs----~yL~gRerkIaDi~idh 211 (293)
T KOG1882|consen 136 KEKPSFELSGALLEDTNRFRGVVVKYNEPPEARKPKKRWRLYPFKCYEVLPVLYIHRQS----CYLDGRERKIADIPIDH 211 (293)
T ss_pred ccCCchhhchhhhhhhcceeeEEEEecCCchhcCchhheecccccCCcccchheeeeee----eeecCceeeeeccCCCC
Confidence 34455555555555555555554 3344445568999999998888777777765 69999975 68999999
Q ss_pred cccccceeEEecCC------C-----CceeeEEecccccccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEE
Q 007933 219 SEVSGKHALINWNP------N-----KLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (584)
Q Consensus 219 ~~VSr~Ha~I~~~~------~-----~~~~~l~DlgS~NGT~vng~~v~~p~~~~r~~g~~~~L~~Gd~I~lG~ts~~~ 286 (584)
++.|++||.|.+.. + .-..||.||||.||||||.+.|.. ...++|..+|+|++|-.+..+
T Consensus 212 pScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~Iep--------qRYyEL~ekDvlkfgfs~rEy 282 (293)
T KOG1882|consen 212 PSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEP--------QRYYELREKDVLKFGFSSREY 282 (293)
T ss_pred ccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCc--------hheeeeecCceeeeccchHHH
Confidence 99999999999852 2 135889999999999999999983 334899999999999665443
No 27
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.00 E-value=6.5e-10 Score=116.65 Aligned_cols=95 Identities=26% Similarity=0.320 Sum_probs=76.8
Q ss_pred EEEEEeecCC--Cc--eeeeeeccCCCCcceeecCcCCCcceeec--cccccceeEEecCCCCceeeEEecccccccccc
Q 007933 178 LSLEVVSGPS--RG--IRCSVQSANASRLPLTLGRVSPSDVLLKD--SEVSGKHALINWNPNKLKWELVDMGSLNGTLLN 251 (584)
Q Consensus 178 ~~L~v~~G~~--~g--~~~~l~~~~~~~~~~~iGR~~~~di~i~d--~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vn 251 (584)
++|.|+.... .| ....+..+ ..+|||+++||+.|+| ..||++||+|.+.++ .|+|.|. |.||||||
T Consensus 3 lsL~vtn~~~l~sG~~aq~~f~~~-----~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~dg--~f~L~Dt-S~g~l~VN 74 (430)
T COG3456 3 LSLQVTNAQKLESGKAAQKLFDRG-----GGVIGRSPDCDWQIDDPERFVSKQHCTISYRDG--GFCLTDT-SNGGLLVN 74 (430)
T ss_pred eEEEEeccccCCCchhhhhhhhcC-----CcccccCCCCCccccCcccccchhheEEEecCC--eEEEEec-CCCceeec
Confidence 5666664332 23 23445555 5799999999999998 799999999999999 9999997 69999999
Q ss_pred cccCCCCCCCCCCCCCC-cccCCCCeEEecccceEEEE
Q 007933 252 SQPINHPDSGSRHWGKP-MELTSGDIITLGTTSSIHVQ 288 (584)
Q Consensus 252 g~~v~~p~~~~r~~g~~-~~L~~Gd~I~lG~ts~~~~~ 288 (584)
|..+.. |.+ .+|+.||+|.+|...+.+..
T Consensus 75 gs~~~~--------g~~~~RLqqGd~i~iG~y~i~V~l 104 (430)
T COG3456 75 GSDLPL--------GEGSARLQQGDEILIGRYIIRVHL 104 (430)
T ss_pred ccccCC--------CCCccccccCCEEeeccEEEEEEe
Confidence 988774 444 89999999999999877643
No 28
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.53 E-value=4.4e-08 Score=98.34 Aligned_cols=107 Identities=23% Similarity=0.375 Sum_probs=87.1
Q ss_pred chhhccccceEEEEEeecCCC-ceeeeeeccCCCCcceeecCcC-CCcceeeccccccceeEEecCCCCceeeEEecccc
Q 007933 168 PKAIADQRSCLSLEVVSGPSR-GIRCSVQSANASRLPLTLGRVS-PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSL 245 (584)
Q Consensus 168 p~~~~~~~~~~~L~v~~G~~~-g~~~~l~~~~~~~~~~~iGR~~-~~di~i~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~ 245 (584)
|.++..++..+.|.+..|... ...+.+... .+.+||.. .||++|++.++||.||.+.+......++|.||||+
T Consensus 8 p~wA~kpp~g~hldv~k~d~li~kl~iddkr-----~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~ 82 (337)
T KOG1880|consen 8 PSWAGKPPAGLHLDVVKGDKLIQKLIIDDKR-----RYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFLIDLGST 82 (337)
T ss_pred CCcccCCCCCCceeeeecchhHHHHHhhhhh-----hhhhccCCCccceEeecchhhhhHhhhhhhhccceEEEEEccCC
Confidence 445555666788888877653 334444444 79999997 79999999999999999999877667999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEEE
Q 007933 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (584)
Q Consensus 246 NGT~vng~~v~~p~~~~r~~g~~~~L~~Gd~I~lG~ts~~~~ 287 (584)
+|||+...++.. ..++++..|..+++|..+..+.
T Consensus 83 hgtf~g~~rL~~--------~~p~~l~i~~~~~fgasTr~y~ 116 (337)
T KOG1880|consen 83 HGTFLGNERLEP--------HKPVQLEIGSTFHFGASTRIYL 116 (337)
T ss_pred cceeeeeeeecc--------CCCccccCCceEEEeccceeee
Confidence 999998888883 4679999999999999887764
No 29
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=98.03 E-value=9.9e-06 Score=88.19 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=77.4
Q ss_pred EEEEEeecCCCceeeeeeccCCCCcceeec-CcCCCcceeeccccccceeEEecCCCCceeeEEecccccccccccccCC
Q 007933 178 LSLEVVSGPSRGIRCSVQSANASRLPLTLG-RVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPIN 256 (584)
Q Consensus 178 ~~L~v~~G~~~g~~~~l~~~~~~~~~~~iG-R~~~~di~i~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~v~ 256 (584)
+.|.|+.||..|..++|..+ .++|| +.++|||++.|+.||++|++|.+..+ ++.+.+ +..+.++||.++.
T Consensus 1 ~~lrvl~G~~~G~~~~L~~g-----~~~iG~~~~~~di~L~d~~~~~~h~~l~v~~~--~~~l~~--~~~~~~~~g~~~~ 71 (410)
T TIGR02500 1 WKLRVLSGPHRGAELPLPEG-----NLVLGTDAADCDIVLSDGGIAAVHVSLHVRLE--GVTLAG--AVEPAWEEGGVLP 71 (410)
T ss_pred CEEEEecCCCCCcEEECCCC-----ceEeccCCCCcEEEeCCCCccchheEEEEcCc--eEEEec--CCcceeECCcccc
Confidence 46899999999999999998 79999 99999999999999999999999888 788876 4677888983332
Q ss_pred CCCCCCCCCCCCcccCCCCeEEecccceEE
Q 007933 257 HPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (584)
Q Consensus 257 ~p~~~~r~~g~~~~L~~Gd~I~lG~ts~~~ 286 (584)
. .....|..+..+.+|...|.+
T Consensus 72 ~--------~~g~~l~~~~~l~~g~~~~~~ 93 (410)
T TIGR02500 72 D--------EEGTPLPSGTPLLVAGVAFAL 93 (410)
T ss_pred c--------CCCCccCCCCceecceeEEec
Confidence 1 123668888899999887766
No 30
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.00032 Score=74.47 Aligned_cols=78 Identities=31% Similarity=0.321 Sum_probs=63.8
Q ss_pred ceeecCcCCCcceeeccccccceeEEecC-------------CCCceeeEEecccccccccccccCCCCCCCCCCCCCCc
Q 007933 203 PLTLGRVSPSDVLLKDSEVSGKHALINWN-------------PNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269 (584)
Q Consensus 203 ~~~iGR~~~~di~i~d~~VSr~Ha~I~~~-------------~~~~~~~l~DlgS~NGT~vng~~v~~p~~~~r~~g~~~ 269 (584)
.+++||.+.||..+....+|.+|..|..- .++..+++.|. |+||||||-+.+.. +...
T Consensus 65 ~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e~i~k--------~~~r 135 (475)
T KOG0615|consen 65 EFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDEMIGK--------GLSR 135 (475)
T ss_pred eEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHhHhhc--------cccc
Confidence 79999999999999988888888876543 23357999997 89999999998885 5567
Q ss_pred ccCCCCeEEecccceEEEEE
Q 007933 270 ELTSGDIITLGTTSSIHVQI 289 (584)
Q Consensus 270 ~L~~Gd~I~lG~ts~~~~~v 289 (584)
.|.+||+|.+|-.....+.+
T Consensus 136 ~lkN~dei~is~p~~~~~v~ 155 (475)
T KOG0615|consen 136 ILKNGDEISISIPALKIFVF 155 (475)
T ss_pred cccCCCEEEeccchhheeee
Confidence 89999999999887665444
No 31
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=97.08 E-value=0.016 Score=62.22 Aligned_cols=62 Identities=13% Similarity=0.325 Sum_probs=43.8
Q ss_pred cccceeeeccCCcce-------eccHHHHHHHHHHHhhhhcccccchHHHHHHHHhhhhh----hccccCCceEEEEecC
Q 007933 505 ASKAFALLASDGFWD-------VISVKKAIQLVVQMREKYSADKENSTEKIANVLLSEAR----TLRTKDNTSIIFLDFD 573 (584)
Q Consensus 505 ~~ddflVLaSDGLwD-------~ls~~ei~~lv~~~~~~~~~~~~~~~~~~A~~Lv~~A~----~~gs~DNiTvIVv~~~ 573 (584)
..+|.+++.|||+.+ .+..+...+++.+.. ..+++++++.+.+... .....||+|++++++.
T Consensus 294 ~~gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~-------~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 294 EPGDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLL-------GQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred cCCCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 358999999999999 455556666655421 3567777777776553 3345688999999875
No 32
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.63 E-value=0.061 Score=62.90 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=61.2
Q ss_pred eeeeeccCCCCcceeecCcC---CCcceeeccccccceeEEecCCCCceeeEEecccccccccccccCCCCCCCCCCCCC
Q 007933 191 RCSVQSANASRLPLTLGRVS---PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGK 267 (584)
Q Consensus 191 ~~~l~~~~~~~~~~~iGR~~---~~di~i~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~v~~p~~~~r~~g~ 267 (584)
.+.|..+ ..+|||.+ ..||++....|--+||.|.-.++++-+.|.-. ----|||||+.|..
T Consensus 471 lY~ikeG-----~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aetyVNGk~v~e---------- 534 (1221)
T KOG0245|consen 471 LYYIKEG-----ETRVGREDASSRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETYVNGKLVTE---------- 534 (1221)
T ss_pred EEEeccC-----ceecCCCCcccCCceEecchhhhhhceEEEecCCCceEEeccC-CccceeEccEEcCC----------
Confidence 4556666 68999976 68899999999999999998777332555443 23569999999996
Q ss_pred CcccCCCCeEEecccc
Q 007933 268 PMELTSGDIITLGTTS 283 (584)
Q Consensus 268 ~~~L~~Gd~I~lG~ts 283 (584)
|..|+.||+|.+|..-
T Consensus 535 p~qL~~GdRiilG~~H 550 (1221)
T KOG0245|consen 535 PTQLRSGDRIILGGNH 550 (1221)
T ss_pred cceeccCCEEEEcCce
Confidence 4999999999999863
No 33
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=93.97 E-value=0.15 Score=59.06 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=74.8
Q ss_pred EEEEe--ecCCCceeeeeeccCCCCcceeecCcCCC--cceeeccccccceeEEecCCCCceeeEEeccccccccccccc
Q 007933 179 SLEVV--SGPSRGIRCSVQSANASRLPLTLGRVSPS--DVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQP 254 (584)
Q Consensus 179 ~L~v~--~G~~~g~~~~l~~~~~~~~~~~iGR~~~~--di~i~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~ 254 (584)
.|+++ .|....+.+.|+.+ +.-+|-...+ .|.|..+.|-.+||.|..-++ -..|.-..----|||||.+
T Consensus 358 vLve~s~dG~~s~~ri~L~~~-----vtEVGs~~~~~~~iqLfGP~IqprHc~it~meG--VvTvTP~~~DA~t~VnGh~ 430 (1629)
T KOG1892|consen 358 VLVELSPDGSDSRKRIRLQLS-----VTEVGSEKLDDNSIQLFGPGIQPRHCDITNMEG--VVTVTPRSMDAETYVNGHR 430 (1629)
T ss_pred EEEEEcCCCCCcceeEEeccC-----ceeccccccCCcceeeeCCCCCccccchhhccc--eEEecccccchhhhcccee
Confidence 34444 45555578889888 7889998754 688899999999999998877 7888887555679999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCeEEeccc-ceEEEEE
Q 007933 255 INHPDSGSRHWGKPMELTSGDIITLGTT-SSIHVQI 289 (584)
Q Consensus 255 v~~p~~~~r~~g~~~~L~~Gd~I~lG~t-s~~~~~v 289 (584)
|.+ +..|+.|+.|++|.. +|.|+.-
T Consensus 431 isq----------ttiL~~G~~v~fGa~hsfkF~ds 456 (1629)
T KOG1892|consen 431 ISQ----------TTILQSGMKVQFGASHSFKFVDS 456 (1629)
T ss_pred cch----------hhhhccCCEEEeccceeEEecCC
Confidence 996 488999999999986 5566543
No 34
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=93.50 E-value=0.12 Score=56.69 Aligned_cols=92 Identities=18% Similarity=0.326 Sum_probs=70.6
Q ss_pred EEEEeecCCCceeeeeeccCCCCcceeecCcC-CCcceee------ccccccceeEEecCCCCceeeEEecccccccccc
Q 007933 179 SLEVVSGPSRGIRCSVQSANASRLPLTLGRVS-PSDVLLK------DSEVSGKHALINWNPNKLKWELVDMGSLNGTLLN 251 (584)
Q Consensus 179 ~L~v~~G~~~g~~~~l~~~~~~~~~~~iGR~~-~~di~i~------d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vn 251 (584)
.+-|+-|+.. .+.+.+. .+++||.. ++.|-|+ ...|||+.|.|...++ +.|+|..+| .---|||
T Consensus 432 AiAvL~Gr~s--kh~mrk~-----EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~-GsF~IkNlG-K~~I~vn 502 (547)
T KOG2293|consen 432 AIAVLYGRFS--KHYMRKK-----EVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKND-GSFFIKNLG-KRSILVN 502 (547)
T ss_pred eeEEEechhh--HhhhcCc-----ceEeeccCCCcceeeeccccCccceeeccceeEEeccC-CcEEeccCc-ceeEEeC
Confidence 5667777643 4555555 69999997 2333332 2789999999998766 589999998 4678999
Q ss_pred cccCCCCCCCCCCCCCCcccCCCCeEEecccceEEE
Q 007933 252 SQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (584)
Q Consensus 252 g~~v~~p~~~~r~~g~~~~L~~Gd~I~lG~ts~~~~ 287 (584)
|.++.. |..+.|.+...|.|-+-+|+|.
T Consensus 503 g~~l~~--------gq~~~L~~nclveIrg~~FiF~ 530 (547)
T KOG2293|consen 503 GGELDR--------GQKVILKNNCLVEIRGLRFIFE 530 (547)
T ss_pred CccccC--------CceEEeccCcEEEEccceEEEe
Confidence 999984 7778899999999988888874
No 35
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=92.11 E-value=0.2 Score=56.26 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=65.3
Q ss_pred eeeeeeccCCCCcceeecCcCCCcceeeccccccceeEEecCCCCceeeEEecccccccccccccCCCCCCCCCCCCCCc
Q 007933 190 IRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269 (584)
Q Consensus 190 ~~~~l~~~~~~~~~~~iGR~~~~di~i~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~v~~p~~~~r~~g~~~ 269 (584)
..+.|..+ .++|||+|.- .|.|...||+..++..+-+++...|.-||. |-+-|||..+.+ +...
T Consensus 25 ~~~~~~~~-----~~~~gr~pet--~i~d~~cs~~qv~l~a~~~~~~v~~k~lg~-np~~~~~~~~~~--------~~~~ 88 (526)
T TIGR01663 25 HFIHLDAG-----ALFLGRGPET--GIRDRKCSKRQIELQADLEKATVALKQLGV-NPCGTGGLELKP--------GGEG 88 (526)
T ss_pred CeeccCCC-----ceEEccCccc--ccchhhhchhhheeeecccCceEEEEEccC-CCcccCceEecC--------CCee
Confidence 45556655 7899999865 678999999999999988877888999985 999999999984 7789
Q ss_pred ccCCCCeEEecccce
Q 007933 270 ELTSGDIITLGTTSS 284 (584)
Q Consensus 270 ~L~~Gd~I~lG~ts~ 284 (584)
.|++||.+.+=.-..
T Consensus 89 ~l~~g~~l~~v~~~~ 103 (526)
T TIGR01663 89 ELGHGDLLEIVNGLH 103 (526)
T ss_pred eecCCCEEEEecccc
Confidence 999999987755444
No 36
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=85.20 E-value=1.3 Score=51.84 Aligned_cols=95 Identities=17% Similarity=0.271 Sum_probs=72.2
Q ss_pred eEEEEEeecCCCce--eeeeeccCCCCcceeecCcCCCcceeeccccccceeEEecCCCCceeeEEeccccccccccccc
Q 007933 177 CLSLEVVSGPSRGI--RCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQP 254 (584)
Q Consensus 177 ~~~L~v~~G~~~g~--~~~l~~~~~~~~~~~iGR~~~~di~i~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~ 254 (584)
++.+..-..|.... .+.+.. ..+||-...-||++..-.+=++||.|.+..+ +.+++.-+-++ -+||||..
T Consensus 446 ~ylvnlnadP~lnellvyyl~~------~tlig~~~~~~i~l~glgi~p~h~vidI~~d-g~l~~~p~~~~-R~~VNGs~ 517 (1714)
T KOG0241|consen 446 CYLVNLNADPALNELLVYYLKD------HTLIGLFKSQDIQLSGLGIQPKHCVIDIESD-GELRLTPLLNA-RSCVNGSL 517 (1714)
T ss_pred eEEEeccCCccHHHHHHHhhcC------ceeeccccCcceeeecCcccCccceeeeccC-CcEEecccccc-eeeecCce
Confidence 34444445555443 233332 4689988899999999999999999999887 34888887665 89999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCeEEecccceEEEEE
Q 007933 255 INHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQI 289 (584)
Q Consensus 255 v~~p~~~~r~~g~~~~L~~Gd~I~lG~ts~~~~~v 289 (584)
+.. +..|.+||.|-.|..-|.-+.+
T Consensus 518 v~~----------~t~L~~GdRiLwGnnHFFrvN~ 542 (1714)
T KOG0241|consen 518 VCS----------TTQLWHGDRILWGNNHFFRVNL 542 (1714)
T ss_pred ecc----------ccccccCceEEecccceEEecC
Confidence 885 4899999999999997665543
No 37
>PF15102 TMEM154: TMEM154 protein family
Probab=80.81 E-value=1.4 Score=40.83 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCc
Q 007933 13 LLMLILILLFIFIACKPWRFFFPSYRS 39 (584)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (584)
|..||++++++++.||+||.-..|++.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K~~~ss~ 94 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTKQEPSSQ 94 (146)
T ss_pred HHHHHHHHHHheeEEeecccCCCCccc
Confidence 334445556777779999976544333
No 38
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=77.60 E-value=6.4 Score=42.51 Aligned_cols=89 Identities=11% Similarity=0.154 Sum_probs=66.2
Q ss_pred ceEEEEEeecCCCceeeeeeccCCCCcceeecCcCCCcceeeccccccceeEEecCCCCceeeEEecccccccccccccC
Q 007933 176 SCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPI 255 (584)
Q Consensus 176 ~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~iGR~~~~di~i~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~v 255 (584)
..++|..+.||..|+...|..+ .+++|=.. |||.++=+. +.-..+..+++ +.++.- +.--++|||.+.
T Consensus 3 ~~~Klr~Lng~L~GrEl~Lp~G-----~~tlG~~g-cDi~lpL~~--~~~~~L~i~e~--gi~l~~--~~~~vwVnG~~~ 70 (395)
T PRK15367 3 SSWKIRFLGHVLQGREVWLNEG-----NLSLGEKG-CDICIPLTI--NEKIILREQAD--SLFVDA--GKARVRVNGRRF 70 (395)
T ss_pred cceeeeecCCcccCcEEecCCC-----ceeecCCC-ceEEEECCC--CCEEEEEEcCC--cEEEec--CCceEEECCEEc
Confidence 4688999999999999999999 79999854 999887644 44455666776 676632 123578999987
Q ss_pred CCCCCCCCCCCCCcccCCCCeEEecccceEE
Q 007933 256 NHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (584)
Q Consensus 256 ~~p~~~~r~~g~~~~L~~Gd~I~lG~ts~~~ 286 (584)
.. ...|--+..|.+....|.+
T Consensus 71 ~~----------~~~LPl~q~Ie~aG~~~vl 91 (395)
T PRK15367 71 NP----------NKPLPSSGVLQVAGVAIAF 91 (395)
T ss_pred CC----------CCCCCCcchhhhcceEEEe
Confidence 64 2457777888877776655
No 39
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=64.64 E-value=3.7 Score=37.41 Aligned_cols=19 Identities=11% Similarity=0.640 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 007933 10 FTVLLMLILILLFIFIACK 28 (584)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ 28 (584)
||+||+++++|+|++|+|+
T Consensus 4 l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555553
No 40
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=64.51 E-value=5.7 Score=34.47 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCc
Q 007933 9 VFTVLLMLILILLFIFIACKPWRFFFPSYRS 39 (584)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (584)
.|++..+++.+|+++..-|.-||.++.|++-
T Consensus 22 GVv~~al~~SlLIalaaKC~~~~k~~~SY~H 52 (102)
T PF15176_consen 22 GVVVTALVTSLLIALAAKCPVWYKYLASYRH 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 3444444445555555559999988777643
No 41
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=63.82 E-value=14 Score=42.06 Aligned_cols=24 Identities=17% Similarity=0.497 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhcccccccc
Q 007933 12 VLLMLILILLFIFIACKPWRFFFP 35 (584)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~ 35 (584)
++.|.|+++++|+...++||+...
T Consensus 397 f~~if~iva~ii~~~L~R~rr~~~ 420 (807)
T KOG1094|consen 397 FVAIFLIVALIIALMLWRWRRLLS 420 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444455567998866
No 42
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=50.14 E-value=17 Score=34.55 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccc
Q 007933 8 VVFTVLLMLILILLFIFIACKPWRFFF 34 (584)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (584)
...|.||+.+..++++.|++|-||.--
T Consensus 95 ~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 95 KRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345677777777777788887777554
No 43
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=49.70 E-value=22 Score=26.72 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 007933 9 VFTVLLMLILILLFIFIACKPWR 31 (584)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (584)
.+.+++|+++.++++++||+|=+
T Consensus 13 ~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 13 SWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 35566777888999999998865
No 44
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.66 E-value=17 Score=32.98 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccccccccC
Q 007933 5 ESIVVFTVLLMLILILLFIFIACKPWRFFFPS 36 (584)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (584)
=.++++|+++.||+|++++++.-|+=|....+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P 33 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRRGLQP 33 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 34678889999999999999999998876555
No 45
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=45.92 E-value=20 Score=31.51 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Q 007933 8 VVFTVLLMLILILLFIFIACKPWRFF 33 (584)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (584)
...+++.|+.+++.+++|++||-++-
T Consensus 53 ~~~~~~~~~w~~~A~~ly~~RP~s~R 78 (103)
T PF11027_consen 53 NSMFMMMMLWMVLAMALYLLRPSSLR 78 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHcCchhhc
Confidence 34677788888888999999986543
No 46
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=43.26 E-value=14 Score=26.79 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccc
Q 007933 7 IVVFTVLLMLILILLFIFIACKPWR 31 (584)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (584)
.+++|.+.-+..+.++.+|++|.|-
T Consensus 10 VIlVF~lVglv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVALFIYRKWQ 34 (43)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHH
Confidence 3457777778888999999999996
No 47
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=41.09 E-value=23 Score=35.32 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 007933 9 VFTVLLMLILILLFIFIAC 27 (584)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (584)
-+++.+++|||++++.++|
T Consensus 17 NiaI~IV~lLIiiva~~lf 35 (217)
T PF07423_consen 17 NIAIGIVSLLIIIVAYQLF 35 (217)
T ss_pred HHHHHHHHHHHHHHhhhhe
Confidence 3777777777777777664
No 48
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=36.44 E-value=48 Score=23.73 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccc
Q 007933 6 SIVVFTVLLMLILILLFIFIACKPWR 31 (584)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (584)
+|++-+++-|.++++.+..|||..-|
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666666777777888888876443
No 49
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=35.76 E-value=47 Score=23.36 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=14.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 007933 4 RESIVVFTVLLMLILILLFIFI 25 (584)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (584)
-|.+..++.+||+++.++-+++
T Consensus 9 fekiT~v~v~lM~i~tvg~v~~ 30 (35)
T PF13253_consen 9 FEKITMVVVWLMLILTVGSVVA 30 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777888777665554
No 50
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.69 E-value=48 Score=26.24 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccccc
Q 007933 7 IVVFTVLLMLILILLFIFIACKPWRFF 33 (584)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (584)
+-++.++.|.+.++..++||++|-+..
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 345777778888888999999998855
No 51
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=34.76 E-value=47 Score=24.80 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 007933 9 VFTVLLMLILILLFIFIACKPWR 31 (584)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (584)
.+.+++|++.++++++++++|=|
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 46667777777788888888765
No 52
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=34.70 E-value=29 Score=27.92 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=18.8
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEE
Q 007933 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (584)
Q Consensus 246 NGT~vng~~v~~p~~~~r~~g~~~~L~~Gd~I~lG~ts~~~ 286 (584)
+..+|||+...+ ....|++||.|.++...+.+
T Consensus 33 g~V~VNGe~e~r---------rg~Kl~~GD~V~~~~~~~~V 64 (65)
T PF13275_consen 33 GEVKVNGEVETR---------RGKKLRPGDVVEIDGEEYRV 64 (65)
T ss_dssp HHHEETTB-------------SS----SSEEEEETTEEEEE
T ss_pred CceEECCEEccc---------cCCcCCCCCEEEECCEEEEE
Confidence 567899987775 23789999999998877654
No 53
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=33.06 E-value=45 Score=25.24 Aligned_cols=22 Identities=18% Similarity=0.461 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 007933 5 ESIVVFTVLLMLILILLFIFIA 26 (584)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (584)
.+..+++.++++++++++++|+
T Consensus 14 ~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 14 RNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred hCchHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777766
No 54
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=32.74 E-value=34 Score=30.62 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 007933 13 LLMLILILLFIFIACKPWR 31 (584)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~ 31 (584)
+||+++++++.+|..||-|
T Consensus 6 il~~vv~~~i~yf~iRPQk 24 (113)
T PRK06531 6 IIMFVVMLGLIFFMQRQQK 24 (113)
T ss_pred HHHHHHHHHHHHheechHH
Confidence 3333333333344455544
No 55
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=29.51 E-value=44 Score=25.78 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=18.8
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCCCCeEEe
Q 007933 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (584)
Q Consensus 246 NGT~vng~~v~~p~~~~r~~g~~~~L~~Gd~I~l 279 (584)
+..+|||+.+.+| ...|..||.|.+
T Consensus 34 G~V~VNg~~~~~~---------~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELENRR---------GKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEccCC---------CCCCCCCCEEEe
Confidence 4567888887543 278999999876
No 56
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=29.03 E-value=29 Score=25.38 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=18.2
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCCCCeE
Q 007933 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDII 277 (584)
Q Consensus 246 NGT~vng~~v~~p~~~~r~~g~~~~L~~Gd~I 277 (584)
++.+|||+.+..| ...+.+||+|
T Consensus 26 g~V~VNg~~v~~~---------~~~v~~~d~I 48 (48)
T PF01479_consen 26 GRVKVNGKVVKDP---------SYIVKPGDVI 48 (48)
T ss_dssp TTEEETTEEESST---------TSBESTTEEE
T ss_pred CEEEECCEEEcCC---------CCCCCCcCCC
Confidence 5678999999865 2788888876
No 57
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=27.92 E-value=72 Score=24.41 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=5.8
Q ss_pred cccccccCc
Q 007933 44 KSGELERPL 52 (584)
Q Consensus 44 ~~~~~~~~~ 52 (584)
|-+|+++|.
T Consensus 30 QfDDle~~a 38 (51)
T TIGR00847 30 QYDDLKGAA 38 (51)
T ss_pred CCCCCccHH
Confidence 447777773
No 58
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=27.55 E-value=67 Score=26.47 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 007933 11 TVLLMLILILLFIFIACKP 29 (584)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (584)
+..++++++++++++.|++
T Consensus 7 ~~g~~~ll~~v~~~~~~~r 25 (75)
T PF14575_consen 7 IVGVLLLLVLVIIVIVCFR 25 (75)
T ss_dssp HHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHhheeEEEEEe
Confidence 3334444444445555543
No 59
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=26.45 E-value=98 Score=26.37 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccC
Q 007933 9 VFTVLLMLILILLFIFIACKPWRFFFPS 36 (584)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (584)
.+.+.+|.++++++-|.-||--|+-.+|
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 3444555555555555566655554444
No 60
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=25.89 E-value=53 Score=37.79 Aligned_cols=65 Identities=20% Similarity=0.084 Sum_probs=49.5
Q ss_pred ccccccceeEEecCCCCceeeEEecccccccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEEEE
Q 007933 218 DSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (584)
Q Consensus 218 d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~v~~p~~~~r~~g~~~~L~~Gd~I~lG~ts~~~~~ 288 (584)
-..++|.|+.|.++...+.|++.+.| .||..++|+++.- ++.+ .+..|..|.+...+.....+..
T Consensus 124 ~k~~~~~~~sIr~Nls~~~a~~~i~g-~~g~~~~g~~~~i---gP~~--~~~~l~~g~~~~~~~~~~~~~~ 188 (610)
T COG5025 124 AKVVSRWQNSIRHNLSLNDAFIKIEG-RNGAKVKGHFWSI---GPGH--ETQFLKSGLRLDGGGKQMMFTL 188 (610)
T ss_pred ccccchhhhhhhcccccCceEEEEec-cCCccccceeecc---CCCc--cceeeccccccccccccccccC
Confidence 47789999999999887799999998 5888899987763 1111 2466888888888887776643
No 61
>PHA00007 E cell lysis protein
Probab=25.67 E-value=84 Score=26.12 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 007933 5 ESIVVFTVLLMLILILLFIFIA 26 (584)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (584)
-.|.+|+++|-||+=.++|.|+
T Consensus 7 ~~~LAFLLLLSLlLPSLLImFI 28 (91)
T PHA00007 7 SDTLAFLLLLSLLLPSLLIMFI 28 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888899898888888887
No 62
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=24.23 E-value=89 Score=30.24 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCccccccccccccCcccCchhhhhhcccccccccCCC
Q 007933 10 FTVLLMLILILLFIFIACKPWRFFFPSYRSRSIIKSGELERPLVSDDEALVRDQSNDLTRNYDLE 74 (584)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (584)
+++.|-++++++.++.+.|=|||++...+..+..+..+..++...... .-+-+..|.||+.
T Consensus 9 ~~tpl~~al~~~~l~~~~kl~~~~~r~~~~~~~~~~~~~P~~~~P~~~----dfT~eEL~~ydGs 69 (183)
T KOG1110|consen 9 FFTPLALALLIFLLFVGLKLSRFKFRRDSEKSDGSTEEPPKESLPKVR----DFTVEELRQYDGS 69 (183)
T ss_pred hhhhHHHHHHHHHHHhheeeeeeeccccccccccCCCCCCccCCCccc----ccCHHHHHhcCCC
Confidence 344444445555557778888886665566666666655443221111 2223445667766
No 63
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=24.03 E-value=56 Score=30.26 Aligned_cols=23 Identities=26% Similarity=0.722 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 007933 10 FTVLLMLILILLFIFIACKPWRF 32 (584)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (584)
++++++++++++++++..|+||+
T Consensus 25 ll~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 25 LLLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555666666666777765
No 64
>PRK11507 ribosome-associated protein; Provisional
Probab=23.98 E-value=86 Score=25.64 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=24.2
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEE
Q 007933 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (584)
Q Consensus 246 NGT~vng~~v~~p~~~~r~~g~~~~L~~Gd~I~lG~ts~~~ 286 (584)
+...|||+.-.+ ....|++||+|.+++..+.+
T Consensus 37 g~V~VNGeve~r---------RgkKl~~GD~V~~~g~~~~v 68 (70)
T PRK11507 37 GQVKVDGAVETR---------KRCKIVAGQTVSFAGHSVQV 68 (70)
T ss_pred CceEECCEEecc---------cCCCCCCCCEEEECCEEEEE
Confidence 557789976664 12789999999999876554
No 65
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.24 E-value=78 Score=27.38 Aligned_cols=8 Identities=38% Similarity=0.733 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 007933 15 MLILILLF 22 (584)
Q Consensus 15 ~~~~~~~~ 22 (584)
++|+++||
T Consensus 11 l~LA~lLl 18 (95)
T PF07172_consen 11 LLLAALLL 18 (95)
T ss_pred HHHHHHHH
Confidence 33333333
No 66
>PF15102 TMEM154: TMEM154 protein family
Probab=21.48 E-value=63 Score=30.18 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccC
Q 007933 10 FTVLLMLILILLFIFIACKPWRFFFPS 36 (584)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (584)
++.++.|+++|++++|+...+|+-..-
T Consensus 62 lIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 62 LIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred eHHHHHHHHHHHHHHHheeEEeecccC
Confidence 344455556677788888877776554
Done!