Query 007936
Match_columns 584
No_of_seqs 202 out of 1571
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 17:18:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02762 pyruvate kinase compl 100.0 9E-140 2E-144 1140.7 59.2 503 82-584 2-509 (509)
2 PTZ00066 pyruvate kinase; Prov 100.0 4E-132 8E-137 1080.6 55.9 470 102-584 35-513 (513)
3 PLN02461 Probable pyruvate kin 100.0 1E-129 3E-134 1061.3 56.0 472 98-583 15-510 (511)
4 PRK09206 pyruvate kinase; Prov 100.0 3E-129 6E-134 1053.1 55.8 463 104-583 1-470 (470)
5 PRK06247 pyruvate kinase; Prov 100.0 5E-129 1E-133 1050.1 54.7 463 102-584 2-471 (476)
6 COG0469 PykF Pyruvate kinase [ 100.0 2E-128 4E-133 1041.9 54.3 468 102-583 2-477 (477)
7 PLN02765 pyruvate kinase 100.0 7E-128 2E-132 1048.2 56.8 465 105-584 28-525 (526)
8 PRK06354 pyruvate kinase; Prov 100.0 2E-126 5E-131 1056.0 55.8 464 103-583 6-478 (590)
9 cd00288 Pyruvate_Kinase Pyruva 100.0 4E-126 9E-131 1033.3 55.8 468 104-583 1-480 (480)
10 PRK05826 pyruvate kinase; Prov 100.0 5E-125 1E-129 1021.5 55.5 455 103-574 2-458 (465)
11 PLN02623 pyruvate kinase 100.0 1E-122 3E-127 1013.8 57.3 463 102-583 107-579 (581)
12 PTZ00300 pyruvate kinase; Prov 100.0 2E-118 4E-123 965.4 52.8 440 131-583 1-453 (454)
13 TIGR01064 pyruv_kin pyruvate k 100.0 3E-117 7E-122 966.1 53.7 456 105-573 1-458 (473)
14 KOG2323 Pyruvate kinase [Carbo 100.0 3E-114 6E-119 927.0 44.8 468 103-583 19-501 (501)
15 PF00224 PK: Pyruvate kinase, 100.0 7E-105 2E-109 840.5 33.6 342 104-454 1-345 (348)
16 PRK06739 pyruvate kinase; Vali 100.0 2E-103 4E-108 825.7 39.4 332 106-452 2-333 (352)
17 PRK14725 pyruvate kinase; Prov 100.0 4E-93 8.7E-98 780.8 40.9 353 82-451 118-597 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 5.7E-91 1.2E-95 758.1 40.3 353 82-450 112-479 (493)
19 PF02887 PK_C: Pyruvate kinase 99.9 2.2E-26 4.8E-31 207.5 12.6 109 474-582 1-117 (117)
20 TIGR03239 GarL 2-dehydro-3-deo 99.7 8.7E-17 1.9E-21 163.5 9.9 137 278-428 66-234 (249)
21 PRK10558 alpha-dehydro-beta-de 99.7 1E-16 2.2E-21 163.6 9.9 138 277-428 72-241 (256)
22 PRK10128 2-keto-3-deoxy-L-rham 99.7 3.1E-16 6.6E-21 160.9 10.5 137 278-428 72-241 (267)
23 COG3836 HpcH 2,4-dihydroxyhept 99.6 3.4E-15 7.5E-20 148.3 11.0 138 277-428 70-240 (255)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.6 5.7E-15 1.2E-19 150.3 10.7 137 278-428 66-235 (249)
25 PF03328 HpcH_HpaI: HpcH/HpaI 99.5 6.7E-14 1.5E-18 139.2 7.0 129 286-423 75-218 (221)
26 TIGR01418 PEP_synth phosphoeno 99.3 1.6E-11 3.5E-16 142.8 12.8 148 283-449 613-782 (782)
27 PRK06464 phosphoenolpyruvate s 99.3 3.8E-11 8.3E-16 139.7 14.8 147 284-450 621-790 (795)
28 TIGR01588 citE citrate lyase, 99.2 1E-10 2.2E-15 121.6 10.2 132 282-423 71-220 (288)
29 TIGR01417 PTS_I_fam phosphoeno 99.1 2.7E-10 5.8E-15 128.3 11.5 135 279-424 366-525 (565)
30 PRK11177 phosphoenolpyruvate-p 99.0 7.7E-10 1.7E-14 124.8 10.0 133 281-424 369-526 (575)
31 COG2301 CitE Citrate lyase bet 98.5 2.2E-07 4.7E-12 96.4 8.1 134 282-423 66-212 (283)
32 cd00727 malate_synt_A Malate s 98.4 3.3E-06 7.1E-11 93.9 15.1 239 103-424 65-345 (511)
33 PRK09255 malate synthase; Vali 98.3 9.9E-06 2.1E-10 90.5 16.0 240 104-424 87-366 (531)
34 PF02896 PEP-utilizers_C: PEP- 98.2 1.1E-05 2.3E-10 84.6 12.8 136 279-425 119-279 (293)
35 TIGR01344 malate_syn_A malate 98.2 9.6E-06 2.1E-10 90.1 12.8 241 103-424 65-346 (511)
36 cd00480 malate_synt Malate syn 98.2 2.4E-05 5.1E-10 87.6 15.8 128 297-424 185-345 (511)
37 PLN02626 malate synthase 97.9 0.0003 6.6E-09 78.6 15.9 125 298-424 213-372 (551)
38 PRK11061 fused phosphoenolpyru 97.3 0.00077 1.7E-08 79.0 9.2 119 295-424 549-692 (748)
39 TIGR01828 pyru_phos_dikin pyru 97.0 0.0045 9.7E-08 73.6 11.3 136 278-424 669-850 (856)
40 PRK08649 inosine 5-monophospha 96.5 0.022 4.8E-07 61.7 11.8 122 285-424 143-285 (368)
41 COG1080 PtsA Phosphoenolpyruva 96.5 0.015 3.2E-07 65.7 10.3 128 286-424 375-527 (574)
42 PRK09279 pyruvate phosphate di 96.0 0.043 9.2E-07 65.6 11.3 137 277-424 674-856 (879)
43 TIGR02751 PEPCase_arch phospho 95.9 0.034 7.4E-07 62.3 9.7 93 296-388 122-247 (506)
44 cd00381 IMPDH IMPDH: The catal 95.5 0.17 3.6E-06 54.0 12.7 124 283-423 93-225 (325)
45 PF00478 IMPDH: IMP dehydrogen 95.3 0.3 6.6E-06 52.7 13.7 123 282-424 106-240 (352)
46 TIGR01304 IMP_DH_rel_2 IMP deh 95.3 0.11 2.3E-06 56.6 10.3 121 286-424 145-284 (369)
47 PRK13655 phosphoenolpyruvate c 94.8 0.15 3.2E-06 57.2 9.7 96 294-389 119-240 (494)
48 PLN02274 inosine-5'-monophosph 94.6 0.34 7.5E-06 54.7 12.4 122 282-424 246-380 (505)
49 PTZ00314 inosine-5'-monophosph 94.6 0.35 7.6E-06 54.5 12.3 124 282-424 239-373 (495)
50 COG3605 PtsP Signal transducti 94.3 0.31 6.7E-06 55.4 10.9 122 298-431 560-706 (756)
51 TIGR01302 IMP_dehydrog inosine 94.3 0.44 9.6E-06 53.0 12.2 125 282-424 222-356 (450)
52 TIGR01305 GMP_reduct_1 guanosi 94.2 0.54 1.2E-05 50.5 12.1 126 282-424 105-241 (343)
53 PRK00009 phosphoenolpyruvate c 93.9 0.25 5.4E-06 59.4 9.9 94 296-389 486-605 (911)
54 cd07944 DRE_TIM_HOA_like 4-hyd 93.4 4.9 0.00011 41.6 17.3 158 266-447 7-180 (266)
55 cd00958 DhnA Class I fructose- 93.0 2 4.4E-05 43.1 13.3 67 289-362 149-221 (235)
56 cd00429 RPE Ribulose-5-phospha 92.8 2.2 4.7E-05 41.5 13.0 133 288-440 72-210 (211)
57 TIGR03151 enACPred_II putative 92.5 2.3 4.9E-05 45.1 13.6 114 285-424 76-190 (307)
58 COG0574 PpsA Phosphoenolpyruva 92.5 0.65 1.4E-05 54.9 10.4 114 299-424 597-723 (740)
59 PRK01130 N-acetylmannosamine-6 92.5 2.2 4.7E-05 42.5 12.7 117 285-425 77-203 (221)
60 PTZ00398 phosphoenolpyruvate c 92.4 0.52 1.1E-05 57.2 9.5 139 298-436 547-709 (974)
61 PRK13125 trpA tryptophan synth 92.0 4.8 0.0001 41.1 14.8 115 288-424 93-214 (244)
62 cd04730 NPD_like 2-Nitropropan 91.9 3.3 7.1E-05 41.3 13.2 116 284-424 68-185 (236)
63 PRK05096 guanosine 5'-monophos 91.6 2.5 5.4E-05 45.6 12.4 126 282-424 106-242 (346)
64 PRK07565 dihydroorotate dehydr 91.5 4.5 9.7E-05 43.2 14.5 141 290-452 121-291 (334)
65 TIGR01306 GMP_reduct_2 guanosi 91.5 2 4.4E-05 46.0 11.7 127 280-424 90-227 (321)
66 PRK05458 guanosine 5'-monophos 91.3 2.2 4.7E-05 45.8 11.8 127 282-425 95-231 (326)
67 PRK00915 2-isopropylmalate syn 91.2 11 0.00023 43.0 17.8 165 266-447 13-191 (513)
68 PRK00286 xseA exodeoxyribonucl 91.2 2.1 4.6E-05 47.2 12.0 193 148-389 10-230 (438)
69 cd04740 DHOD_1B_like Dihydroor 91.1 6.6 0.00014 40.8 15.0 139 290-451 109-281 (296)
70 cd03174 DRE_TIM_metallolyase D 90.8 9.2 0.0002 38.6 15.4 169 266-448 6-189 (265)
71 PRK06843 inosine 5-monophospha 90.7 3 6.5E-05 46.0 12.4 125 282-424 151-285 (404)
72 cd07945 DRE_TIM_CMS Leptospira 90.4 6.9 0.00015 41.0 14.4 168 266-446 6-188 (280)
73 TIGR02090 LEU1_arch isopropylm 90.3 9 0.00019 41.5 15.5 164 266-446 9-182 (363)
74 cd00945 Aldolase_Class_I Class 90.1 6.2 0.00013 37.5 12.8 119 287-424 17-149 (201)
75 PRK09389 (R)-citramalate synth 89.9 9.8 0.00021 43.0 15.9 163 266-445 11-183 (488)
76 PRK07807 inosine 5-monophospha 89.8 3 6.6E-05 47.0 11.8 129 280-424 223-359 (479)
77 PRK05581 ribulose-phosphate 3- 89.6 11 0.00024 37.1 14.4 139 286-443 74-217 (220)
78 cd02940 DHPD_FMN Dihydropyrimi 89.4 3.7 8E-05 43.1 11.5 126 284-426 113-283 (299)
79 cd04739 DHOD_like Dihydroorota 89.4 5.2 0.00011 42.7 12.7 146 284-453 112-290 (325)
80 PF14010 PEPcase_2: Phosphoeno 89.4 0.82 1.8E-05 51.3 6.8 93 295-387 119-244 (491)
81 TIGR00973 leuA_bact 2-isopropy 89.3 10 0.00022 42.9 15.5 161 266-447 10-188 (494)
82 PRK02290 3-dehydroquinate synt 89.2 3.3 7.2E-05 44.6 10.9 214 283-526 13-266 (344)
83 cd04726 KGPDC_HPS 3-Keto-L-gul 89.1 14 0.0003 35.9 14.5 129 287-438 68-200 (202)
84 cd04722 TIM_phosphate_binding 89.0 6.6 0.00014 36.7 11.8 116 289-424 77-199 (200)
85 PRK07107 inosine 5-monophospha 89.0 2.8 6E-05 47.5 10.7 121 285-424 243-381 (502)
86 TIGR01949 AroFGH_arch predicte 88.9 9.7 0.00021 39.1 13.9 67 289-360 162-232 (258)
87 PRK11858 aksA trans-homoaconit 88.9 15 0.00033 40.0 16.0 165 266-447 13-187 (378)
88 PRK08227 autoinducer 2 aldolas 88.6 6.2 0.00013 41.2 12.2 148 342-517 48-197 (264)
89 PRK09722 allulose-6-phosphate 88.4 13 0.00027 38.1 14.1 143 286-447 72-222 (229)
90 PTZ00170 D-ribulose-5-phosphat 88.2 5.4 0.00012 40.4 11.3 144 281-445 73-222 (228)
91 cd00958 DhnA Class I fructose- 87.9 13 0.00028 37.3 13.8 133 279-425 16-164 (235)
92 PRK08318 dihydropyrimidine deh 87.8 6.7 0.00015 43.1 12.6 148 284-453 113-306 (420)
93 cd02810 DHOD_DHPD_FMN Dihydroo 87.8 8.7 0.00019 39.7 12.8 123 287-424 115-272 (289)
94 PRK08745 ribulose-phosphate 3- 87.5 13 0.00029 37.7 13.6 140 286-445 75-220 (223)
95 PRK05567 inosine 5'-monophosph 87.2 9.5 0.00021 43.0 13.6 123 284-424 228-360 (486)
96 PRK13813 orotidine 5'-phosphat 87.1 3.3 7.2E-05 41.0 8.9 131 290-445 74-213 (215)
97 cd07939 DRE_TIM_NifV Streptomy 87.0 20 0.00044 36.7 14.9 163 266-446 7-180 (259)
98 cd04726 KGPDC_HPS 3-Keto-L-gul 87.0 4.4 9.5E-05 39.4 9.6 116 282-424 11-133 (202)
99 PF01959 DHQS: 3-dehydroquinat 86.8 2.7 5.9E-05 45.5 8.5 211 286-525 15-275 (354)
100 PRK07695 transcriptional regul 86.7 12 0.00027 36.6 12.6 131 289-444 66-197 (201)
101 PRK08883 ribulose-phosphate 3- 85.9 16 0.00035 37.0 13.1 137 286-444 71-215 (220)
102 cd04729 NanE N-acetylmannosami 85.8 8.2 0.00018 38.4 11.0 119 285-424 81-206 (219)
103 PRK02048 4-hydroxy-3-methylbut 85.8 14 0.00029 42.8 13.7 148 286-443 44-222 (611)
104 TIGR01163 rpe ribulose-phospha 85.7 18 0.00038 35.2 13.1 133 287-438 70-207 (210)
105 PLN02334 ribulose-phosphate 3- 85.7 27 0.00059 35.1 14.8 138 288-446 80-224 (229)
106 PRK06852 aldolase; Validated 85.5 19 0.0004 38.5 13.9 108 382-495 91-207 (304)
107 PRK12595 bifunctional 3-deoxy- 85.0 24 0.00051 38.5 14.7 90 309-424 169-259 (360)
108 PLN02591 tryptophan synthase 84.7 19 0.00042 37.2 13.3 118 288-424 98-218 (250)
109 PF04551 GcpE: GcpE protein; 84.6 5.3 0.00011 43.3 9.4 96 287-388 35-136 (359)
110 TIGR00237 xseA exodeoxyribonuc 84.6 11 0.00024 41.9 12.3 161 193-389 36-225 (432)
111 PRK07259 dihydroorotate dehydr 84.1 22 0.00047 37.2 13.7 140 290-452 111-285 (301)
112 PRK13397 3-deoxy-7-phosphohept 84.0 32 0.00069 35.7 14.5 89 310-424 67-156 (250)
113 CHL00200 trpA tryptophan synth 83.9 22 0.00048 37.0 13.4 120 288-424 111-231 (263)
114 PRK05286 dihydroorotate dehydr 83.6 6.8 0.00015 42.1 9.8 141 293-452 166-341 (344)
115 PRK00043 thiE thiamine-phospha 83.3 26 0.00056 34.1 13.1 130 288-446 73-210 (212)
116 PRK13307 bifunctional formalde 83.2 15 0.00032 40.5 12.3 132 289-444 243-378 (391)
117 TIGR01037 pyrD_sub1_fam dihydr 83.1 37 0.00081 35.4 14.9 124 306-452 140-285 (300)
118 cd04732 HisA HisA. Phosphorib 82.9 24 0.00052 35.1 12.9 128 284-434 83-229 (234)
119 PRK00694 4-hydroxy-3-methylbut 82.9 4.8 0.0001 46.1 8.5 151 286-449 48-229 (606)
120 cd04724 Tryptophan_synthase_al 82.7 36 0.00079 34.7 14.3 102 277-389 9-135 (242)
121 cd00452 KDPG_aldolase KDPG and 82.7 21 0.00046 34.8 12.1 103 287-424 20-124 (190)
122 PRK15452 putative protease; Pr 82.7 10 0.00023 42.4 11.1 117 282-428 9-145 (443)
123 TIGR03128 RuMP_HxlA 3-hexulose 82.7 50 0.0011 32.2 14.8 136 288-443 68-205 (206)
124 PF03060 NMO: Nitronate monoox 82.6 19 0.00042 38.4 12.7 114 285-424 102-219 (330)
125 PF00311 PEPcase: Phosphoenolp 82.5 3.4 7.4E-05 49.4 7.6 93 297-389 364-482 (794)
126 cd02811 IDI-2_FMN Isopentenyl- 82.4 28 0.0006 37.2 13.8 57 383-452 255-314 (326)
127 PF00682 HMGL-like: HMGL-like 82.4 22 0.00049 35.5 12.5 159 281-448 11-180 (237)
128 PLN02826 dihydroorotate dehydr 82.1 36 0.00078 37.8 14.9 142 293-452 213-393 (409)
129 cd07948 DRE_TIM_HCS Saccharomy 82.0 31 0.00067 35.8 13.7 162 266-445 9-181 (262)
130 TIGR01303 IMP_DH_rel_1 IMP deh 81.8 12 0.00026 42.2 11.3 128 280-425 221-358 (475)
131 cd00331 IGPS Indole-3-glycerol 81.8 25 0.00053 34.9 12.4 126 288-438 86-215 (217)
132 TIGR02660 nifV_homocitr homoci 81.7 29 0.00062 37.7 13.8 164 266-447 10-184 (365)
133 cd02803 OYE_like_FMN_family Ol 81.4 26 0.00057 36.8 13.2 132 280-424 130-311 (327)
134 cd07940 DRE_TIM_IPMS 2-isoprop 81.4 62 0.0013 33.3 15.6 163 266-446 7-184 (268)
135 PRK04302 triosephosphate isome 81.3 36 0.00079 34.1 13.5 132 289-439 78-217 (223)
136 TIGR00977 LeuA_rel 2-isopropyl 81.2 37 0.00079 38.9 14.9 170 266-447 10-196 (526)
137 PLN02925 4-hydroxy-3-methylbut 80.8 27 0.00059 41.1 13.7 151 286-449 113-294 (733)
138 PRK08195 4-hyroxy-2-oxovalerat 80.8 56 0.0012 35.2 15.5 147 281-447 22-186 (337)
139 cd00640 Trp-synth-beta_II Tryp 80.7 39 0.00084 33.9 13.6 119 373-520 63-188 (244)
140 TIGR01361 DAHP_synth_Bsub phos 80.6 29 0.00062 36.1 12.8 105 308-438 75-182 (260)
141 TIGR00007 phosphoribosylformim 80.2 21 0.00045 35.6 11.3 118 284-425 82-219 (230)
142 PRK07028 bifunctional hexulose 80.2 46 0.001 36.8 15.0 137 288-445 73-211 (430)
143 PRK05581 ribulose-phosphate 3- 80.2 40 0.00087 33.1 13.3 130 286-444 19-161 (220)
144 COG2352 Ppc Phosphoenolpyruvat 79.7 4.6 9.9E-05 48.0 7.1 88 300-387 489-600 (910)
145 TIGR00612 ispG_gcpE 1-hydroxy- 79.5 17 0.00036 39.3 10.7 141 289-445 40-189 (346)
146 COG0119 LeuA Isopropylmalate/h 79.5 36 0.00078 37.8 13.8 167 266-447 11-188 (409)
147 PF00478 IMPDH: IMP dehydrogen 79.4 4 8.6E-05 44.3 6.2 52 105-156 95-146 (352)
148 TIGR01859 fruc_bis_ald_ fructo 79.2 31 0.00068 36.2 12.7 154 290-447 34-199 (282)
149 PRK15447 putative protease; Pr 79.1 26 0.00056 37.0 12.1 119 282-428 13-142 (301)
150 PLN02321 2-isopropylmalate syn 79.0 39 0.00084 39.6 14.4 165 266-447 95-282 (632)
151 cd04737 LOX_like_FMN L-Lactate 79.0 23 0.0005 38.5 11.9 114 307-451 209-335 (351)
152 PRK13398 3-deoxy-7-phosphohept 78.7 78 0.0017 33.0 15.3 106 308-439 77-185 (266)
153 TIGR01949 AroFGH_arch predicte 78.3 35 0.00076 35.0 12.6 132 279-424 31-176 (258)
154 TIGR01037 pyrD_sub1_fam dihydr 78.1 58 0.0013 33.9 14.4 128 283-425 22-190 (300)
155 cd02809 alpha_hydroxyacid_oxid 78.1 23 0.0005 37.2 11.4 112 287-425 133-257 (299)
156 PLN02746 hydroxymethylglutaryl 77.9 36 0.00077 37.0 12.9 164 266-446 55-238 (347)
157 PRK09250 fructose-bisphosphate 77.6 31 0.00067 37.5 12.1 177 298-495 36-236 (348)
158 cd07941 DRE_TIM_LeuA3 Desulfob 77.2 67 0.0015 33.3 14.4 169 266-446 7-192 (273)
159 PRK13396 3-deoxy-7-phosphohept 77.1 69 0.0015 34.9 14.8 103 309-437 152-258 (352)
160 cd00945 Aldolase_Class_I Class 76.9 45 0.00098 31.5 12.2 108 403-522 64-182 (201)
161 COG0826 Collagenase and relate 76.7 52 0.0011 35.8 13.7 119 282-428 12-148 (347)
162 PRK07226 fructose-bisphosphate 76.7 39 0.00085 34.9 12.5 132 279-424 34-180 (267)
163 cd02922 FCB2_FMN Flavocytochro 76.7 45 0.00097 36.1 13.2 94 306-424 200-300 (344)
164 COG1751 Uncharacterized conser 76.6 6.2 0.00013 38.2 5.8 48 474-521 12-60 (186)
165 COG1465 Predicted alternative 75.9 34 0.00075 36.4 11.5 210 287-525 19-297 (376)
166 PRK08227 autoinducer 2 aldolas 75.4 13 0.00028 38.8 8.5 145 286-446 97-248 (264)
167 PRK05692 hydroxymethylglutaryl 75.2 53 0.0011 34.6 13.0 166 266-446 13-196 (287)
168 cd07943 DRE_TIM_HOA 4-hydroxy- 74.9 1.1E+02 0.0023 31.5 15.4 144 282-446 20-182 (263)
169 cd00429 RPE Ribulose-5-phospha 74.8 84 0.0018 30.4 15.9 131 287-446 16-159 (211)
170 cd04742 NPD_FabD 2-Nitropropan 74.7 48 0.001 37.0 13.0 126 285-423 84-247 (418)
171 TIGR03586 PseI pseudaminic aci 74.6 45 0.00097 36.0 12.5 74 343-437 104-180 (327)
172 PF03437 BtpA: BtpA family; I 74.4 11 0.00024 39.2 7.6 83 281-372 155-249 (254)
173 PF03102 NeuB: NeuB family; I 74.4 29 0.00063 35.8 10.6 99 308-434 55-154 (241)
174 cd00405 PRAI Phosphoribosylant 74.1 42 0.00092 32.9 11.4 116 284-428 7-131 (203)
175 cd00564 TMP_TenI Thiamine mono 73.5 68 0.0015 30.3 12.4 125 289-440 65-194 (196)
176 TIGR03217 4OH_2_O_val_ald 4-hy 73.3 1.4E+02 0.003 32.2 16.7 144 280-447 20-185 (333)
177 TIGR00262 trpA tryptophan synt 73.2 63 0.0014 33.4 12.9 119 287-424 106-227 (256)
178 TIGR03569 NeuB_NnaB N-acetylne 72.8 48 0.001 35.8 12.2 57 343-419 103-161 (329)
179 TIGR01163 rpe ribulose-phospha 72.7 95 0.0021 30.1 15.7 135 286-446 14-158 (210)
180 cd00381 IMPDH IMPDH: The catal 72.5 7.3 0.00016 41.6 6.0 50 107-156 83-132 (325)
181 TIGR03128 RuMP_HxlA 3-hexulose 72.4 52 0.0011 32.1 11.6 121 280-424 8-133 (206)
182 PRK06015 keto-hydroxyglutarate 72.4 19 0.0004 36.2 8.4 76 334-425 38-125 (201)
183 cd02808 GltS_FMN Glutamate syn 72.2 8.5 0.00018 42.2 6.6 94 285-391 226-341 (392)
184 cd00954 NAL N-Acetylneuraminic 72.1 26 0.00056 36.5 9.8 99 286-389 24-134 (288)
185 PRK12483 threonine dehydratase 72.0 43 0.00093 38.3 12.2 156 327-523 52-224 (521)
186 PRK06381 threonine synthase; V 71.6 58 0.0013 34.3 12.5 121 374-522 77-209 (319)
187 PF01180 DHO_dh: Dihydroorotat 71.5 32 0.00068 35.9 10.4 147 283-450 111-294 (295)
188 PRK02083 imidazole glycerol ph 71.5 1.1E+02 0.0023 31.2 14.0 131 284-437 84-240 (253)
189 cd04738 DHOD_2_like Dihydrooro 71.4 58 0.0013 34.7 12.5 120 295-426 159-311 (327)
190 PRK12344 putative alpha-isopro 71.4 1.4E+02 0.0029 34.4 16.0 171 266-447 14-200 (524)
191 PRK00278 trpC indole-3-glycero 71.3 95 0.0021 32.1 13.7 130 288-440 125-256 (260)
192 PRK08091 ribulose-phosphate 3- 70.9 94 0.002 31.9 13.2 135 286-442 81-225 (228)
193 cd07938 DRE_TIM_HMGL 3-hydroxy 70.6 87 0.0019 32.7 13.3 169 266-446 7-190 (274)
194 TIGR00674 dapA dihydrodipicoli 70.2 28 0.0006 36.2 9.6 99 286-389 22-130 (285)
195 TIGR02708 L_lactate_ox L-lacta 69.9 26 0.00056 38.4 9.5 93 307-426 216-314 (367)
196 PRK06512 thiamine-phosphate py 69.5 60 0.0013 32.8 11.5 131 289-445 80-213 (221)
197 PRK03620 5-dehydro-4-deoxygluc 69.5 32 0.00069 36.2 9.9 99 286-389 31-138 (303)
198 cd01562 Thr-dehyd Threonine de 69.4 50 0.0011 34.2 11.2 119 373-521 78-201 (304)
199 cd00408 DHDPS-like Dihydrodipi 69.2 39 0.00085 34.7 10.4 99 286-389 21-129 (281)
200 PRK13210 putative L-xylulose 5 68.8 59 0.0013 33.0 11.5 143 286-437 19-197 (284)
201 cd04727 pdxS PdxS is a subunit 68.7 95 0.0021 32.9 12.9 127 289-449 21-163 (283)
202 COG1830 FbaB DhnA-type fructos 68.4 83 0.0018 33.1 12.3 157 336-517 39-207 (265)
203 PRK06552 keto-hydroxyglutarate 68.2 49 0.0011 33.4 10.5 105 300-423 16-135 (213)
204 TIGR01138 cysM cysteine syntha 68.0 77 0.0017 33.1 12.3 122 374-522 73-200 (290)
205 PF01274 Malate_synthase: Mala 68.0 20 0.00043 41.0 8.4 120 296-424 203-364 (526)
206 PRK04180 pyridoxal biosynthesi 67.8 92 0.002 33.2 12.6 115 301-449 56-172 (293)
207 cd07937 DRE_TIM_PC_TC_5S Pyruv 67.8 1.6E+02 0.0034 30.6 14.8 153 281-447 18-191 (275)
208 TIGR02320 PEP_mutase phosphoen 67.8 51 0.0011 34.8 10.9 113 287-423 96-239 (285)
209 COG1570 XseA Exonuclease VII, 67.5 1.1E+02 0.0023 34.5 13.6 178 177-389 29-231 (440)
210 cd01561 CBS_like CBS_like: Thi 67.2 85 0.0018 32.5 12.4 124 374-522 67-197 (291)
211 cd00331 IGPS Indole-3-glycerol 67.1 1.4E+02 0.0029 29.6 14.7 113 282-427 29-151 (217)
212 TIGR01302 IMP_dehydrog inosine 67.1 12 0.00025 41.9 6.3 48 108-155 214-261 (450)
213 PRK07334 threonine dehydratase 67.0 66 0.0014 35.3 12.1 119 374-522 85-208 (403)
214 PRK07226 fructose-bisphosphate 67.0 99 0.0021 31.9 12.8 58 382-447 195-254 (267)
215 PRK14057 epimerase; Provisiona 66.8 1.2E+02 0.0026 31.6 13.2 139 286-444 88-241 (254)
216 PLN03034 phosphoglycerate kina 66.5 29 0.00062 39.3 9.1 312 106-513 114-446 (481)
217 cd04741 DHOD_1A_like Dihydroor 66.5 76 0.0017 33.3 12.0 135 296-450 119-293 (294)
218 PF01791 DeoC: DeoC/LacD famil 65.8 39 0.00084 34.1 9.3 145 286-448 22-189 (236)
219 PF00834 Ribul_P_3_epim: Ribul 65.8 21 0.00046 35.6 7.3 118 286-424 70-194 (201)
220 PRK06815 hypothetical protein; 65.7 54 0.0012 34.6 10.7 119 374-522 82-205 (317)
221 PRK07315 fructose-bisphosphate 65.5 85 0.0018 33.3 12.0 103 326-434 77-183 (293)
222 TIGR00736 nifR3_rel_arch TIM-b 65.5 92 0.002 31.9 11.9 121 282-425 78-221 (231)
223 TIGR02814 pfaD_fam PfaD family 65.4 1.1E+02 0.0024 34.5 13.4 125 285-423 89-252 (444)
224 cd04728 ThiG Thiazole synthase 65.3 1.4E+02 0.003 31.2 13.1 85 349-449 145-229 (248)
225 PRK13585 1-(5-phosphoribosyl)- 65.2 1.2E+02 0.0026 30.3 12.8 128 284-433 86-231 (241)
226 PRK08005 epimerase; Validated 65.0 1.2E+02 0.0025 30.8 12.4 131 286-440 71-207 (210)
227 KOG2550 IMP dehydrogenase/GMP 64.9 41 0.00088 37.5 9.6 126 282-424 249-383 (503)
228 TIGR01182 eda Entner-Doudoroff 64.8 44 0.00096 33.6 9.3 102 290-425 27-129 (204)
229 PRK05718 keto-hydroxyglutarate 64.8 36 0.00079 34.3 8.8 40 370-423 95-134 (212)
230 cd00950 DHDPS Dihydrodipicolin 64.6 43 0.00093 34.6 9.6 99 286-389 24-132 (284)
231 PRK05096 guanosine 5'-monophos 64.4 13 0.00029 40.1 5.8 49 108-156 98-148 (346)
232 cd02932 OYE_YqiM_FMN Old yello 64.2 96 0.0021 33.0 12.4 127 280-424 143-320 (336)
233 PRK14045 1-aminocyclopropane-1 64.1 1.4E+02 0.0031 31.6 13.7 47 476-522 166-221 (329)
234 PRK00208 thiG thiazole synthas 64.0 1.5E+02 0.0032 31.0 13.0 71 363-449 159-229 (250)
235 TIGR01305 GMP_reduct_1 guanosi 63.9 14 0.00031 39.9 6.0 49 108-156 97-147 (343)
236 PTZ00005 phosphoglycerate kina 63.7 69 0.0015 35.7 11.3 214 106-389 38-283 (417)
237 cd04733 OYE_like_2_FMN Old yel 63.4 1.3E+02 0.0028 32.1 13.2 132 280-424 138-322 (338)
238 PLN03228 methylthioalkylmalate 63.3 1.9E+02 0.0041 33.2 15.0 166 266-446 93-280 (503)
239 TIGR00126 deoC deoxyribose-pho 63.1 66 0.0014 32.5 10.2 141 279-445 13-173 (211)
240 PLN02417 dihydrodipicolinate s 62.8 44 0.00096 34.7 9.3 97 286-389 25-131 (280)
241 PRK00278 trpC indole-3-glycero 62.8 1.4E+02 0.0031 30.8 13.0 109 285-426 71-189 (260)
242 cd00951 KDGDH 5-dehydro-4-deox 62.5 58 0.0013 34.0 10.2 99 286-389 24-131 (289)
243 PRK04147 N-acetylneuraminate l 62.4 89 0.0019 32.6 11.5 99 286-389 27-136 (293)
244 PF00677 Lum_binding: Lumazine 62.2 27 0.00059 30.0 6.4 53 209-263 21-81 (85)
245 PF00290 Trp_syntA: Tryptophan 62.2 1.1E+02 0.0023 32.0 11.9 118 289-424 108-226 (259)
246 PTZ00314 inosine-5'-monophosph 61.9 11 0.00023 42.8 4.9 45 111-155 234-278 (495)
247 PRK14024 phosphoribosyl isomer 61.5 1.9E+02 0.0041 29.4 14.4 135 284-437 85-235 (241)
248 TIGR01127 ilvA_1Cterm threonin 61.4 74 0.0016 34.4 11.0 121 373-523 61-186 (380)
249 PRK06843 inosine 5-monophospha 61.2 12 0.00026 41.4 5.0 50 106-155 141-190 (404)
250 cd00377 ICL_PEPM Members of th 60.9 68 0.0015 32.8 10.1 114 286-424 87-226 (243)
251 PRK05458 guanosine 5'-monophos 60.8 15 0.00032 39.6 5.4 48 108-155 85-136 (326)
252 cd00959 DeoC 2-deoxyribose-5-p 60.8 65 0.0014 31.8 9.7 103 383-502 50-155 (203)
253 PLN02970 serine racemase 60.3 1.1E+02 0.0023 32.6 11.9 154 327-522 42-212 (328)
254 TIGR00343 pyridoxal 5'-phospha 60.3 1.5E+02 0.0033 31.5 12.5 113 303-449 51-165 (287)
255 TIGR00739 yajC preprotein tran 59.9 18 0.00039 31.3 4.9 42 215-257 32-73 (84)
256 PRK09427 bifunctional indole-3 59.8 16 0.00035 41.0 5.8 108 284-423 167-283 (454)
257 TIGR01047 nspC carboxynorsperm 59.6 25 0.00054 38.3 7.0 74 83-169 49-122 (380)
258 TIGR00683 nanA N-acetylneurami 59.5 1.2E+02 0.0026 31.7 11.9 99 286-389 24-134 (290)
259 PLN02495 oxidoreductase, actin 59.2 98 0.0021 34.2 11.5 51 367-427 165-217 (385)
260 PRK00311 panB 3-methyl-2-oxobu 59.1 2E+02 0.0042 30.2 13.2 130 280-424 19-181 (264)
261 COG0167 PyrD Dihydroorotate de 59.1 1.8E+02 0.0039 31.3 13.1 149 282-453 107-294 (310)
262 cd00959 DeoC 2-deoxyribose-5-p 59.0 51 0.0011 32.5 8.6 139 279-445 12-172 (203)
263 PRK00507 deoxyribose-phosphate 59.0 1.5E+02 0.0033 30.0 12.1 149 279-444 17-176 (221)
264 PRK00366 ispG 4-hydroxy-3-meth 58.9 99 0.0022 33.8 11.2 137 288-444 47-197 (360)
265 PF01136 Peptidase_U32: Peptid 58.7 18 0.0004 36.0 5.5 41 118-158 157-197 (233)
266 PLN02274 inosine-5'-monophosph 58.7 17 0.00038 41.3 5.8 47 109-155 239-285 (505)
267 PRK08638 threonine dehydratase 58.5 1.1E+02 0.0023 32.9 11.5 120 373-522 88-212 (333)
268 PRK11840 bifunctional sulfur c 58.5 1.6E+02 0.0034 32.0 12.5 83 351-449 221-303 (326)
269 cd03332 LMO_FMN L-Lactate 2-mo 58.5 63 0.0014 35.6 9.9 30 383-424 308-337 (383)
270 TIGR02708 L_lactate_ox L-lacta 58.1 24 0.00053 38.6 6.6 68 286-359 239-316 (367)
271 PRK06801 hypothetical protein; 57.7 1.3E+02 0.0028 31.9 11.7 116 325-444 73-199 (286)
272 PLN02535 glycolate oxidase 57.7 20 0.00043 39.2 5.8 66 285-359 233-311 (364)
273 PRK03170 dihydrodipicolinate s 57.7 56 0.0012 33.9 9.1 99 286-389 25-133 (292)
274 COG0329 DapA Dihydrodipicolina 57.6 95 0.0021 32.8 10.8 99 286-389 28-136 (299)
275 TIGR00259 thylakoid_BtpA membr 57.6 87 0.0019 32.7 10.2 93 286-391 92-208 (257)
276 cd00405 PRAI Phosphoribosylant 57.4 1.6E+02 0.0035 28.8 11.8 112 290-430 67-189 (203)
277 cd06836 PLPDE_III_ODC_DapDC_li 57.3 21 0.00046 38.7 6.0 59 83-148 48-106 (379)
278 PRK04180 pyridoxal biosynthesi 57.2 84 0.0018 33.5 10.1 137 286-444 86-254 (293)
279 PRK07028 bifunctional hexulose 56.9 1.6E+02 0.0035 32.5 12.9 126 276-424 8-138 (430)
280 PRK10737 FKBP-type peptidyl-pr 56.7 31 0.00067 34.6 6.5 77 186-265 50-133 (196)
281 PRK07998 gatY putative fructos 56.6 52 0.0011 34.8 8.5 129 311-447 59-198 (283)
282 TIGR01136 cysKM cysteine synth 56.6 1.3E+02 0.0028 31.3 11.6 122 374-522 72-200 (299)
283 PRK09250 fructose-bisphosphate 56.6 2.6E+02 0.0057 30.6 13.9 95 284-389 91-198 (348)
284 cd02809 alpha_hydroxyacid_oxid 56.3 28 0.0006 36.6 6.5 63 286-357 183-258 (299)
285 cd04736 MDH_FMN Mandelate dehy 56.1 63 0.0014 35.4 9.3 92 307-425 224-319 (361)
286 cd06557 KPHMT-like Ketopantoat 56.0 2E+02 0.0042 30.0 12.5 145 280-448 16-193 (254)
287 PRK08673 3-deoxy-7-phosphohept 55.9 2.9E+02 0.0064 29.9 14.2 106 308-439 143-251 (335)
288 PRK13111 trpA tryptophan synth 55.6 1.1E+02 0.0023 31.9 10.6 116 288-424 109-228 (258)
289 PRK09224 threonine dehydratase 55.4 1.2E+02 0.0026 34.5 11.8 120 373-522 81-206 (504)
290 cd04723 HisA_HisF Phosphoribos 54.8 1.8E+02 0.0039 29.5 11.9 130 284-436 88-230 (233)
291 TIGR00693 thiE thiamine-phosph 54.8 1.6E+02 0.0035 28.3 11.2 126 288-439 65-195 (196)
292 TIGR01306 GMP_reduct_2 guanosi 54.8 24 0.00053 37.9 5.8 48 108-155 84-133 (321)
293 PF00582 Usp: Universal stress 54.6 26 0.00057 30.0 5.2 41 477-518 90-139 (140)
294 TIGR01137 cysta_beta cystathio 54.4 1.3E+02 0.0028 33.2 11.6 126 374-522 76-207 (454)
295 PRK15005 universal stress prot 54.3 24 0.00051 31.8 5.0 39 479-518 97-143 (144)
296 PRK07114 keto-hydroxyglutarate 54.2 66 0.0014 32.8 8.6 108 300-424 18-139 (222)
297 PRK02615 thiamine-phosphate py 54.0 1.6E+02 0.0036 32.0 12.0 130 289-445 210-343 (347)
298 cd04737 LOX_like_FMN L-Lactate 53.8 30 0.00065 37.6 6.4 69 285-359 231-309 (351)
299 PRK04885 ppnK inorganic polyph 53.8 11 0.00024 39.2 3.0 36 487-522 145-184 (265)
300 PRK10717 cysteine synthase A; 53.6 1.7E+02 0.0037 31.0 12.0 130 374-522 78-213 (330)
301 TIGR00343 pyridoxal 5'-phospha 53.2 2.3E+02 0.005 30.2 12.5 138 286-445 79-249 (287)
302 COG0826 Collagenase and relate 53.1 54 0.0012 35.6 8.2 79 339-424 16-99 (347)
303 PRK06382 threonine dehydratase 53.1 1.6E+02 0.0035 32.3 12.1 119 375-523 88-211 (406)
304 PRK05742 nicotinate-nucleotide 53.0 58 0.0013 34.3 8.2 65 282-356 195-262 (277)
305 PF00701 DHDPS: Dihydrodipicol 52.8 92 0.002 32.3 9.7 99 286-389 25-133 (289)
306 KOG3974 Predicted sugar kinase 52.8 84 0.0018 33.2 9.0 113 291-415 52-176 (306)
307 TIGR01139 cysK cysteine syntha 52.7 1.8E+02 0.0039 30.2 11.9 123 374-522 71-200 (298)
308 TIGR00735 hisF imidazoleglycer 52.4 48 0.001 33.9 7.4 86 286-386 158-253 (254)
309 PRK14847 hypothetical protein; 52.1 3.5E+02 0.0075 29.4 14.1 163 266-447 41-235 (333)
310 TIGR03528 2_3_DAP_am_ly diamin 52.1 1.5E+02 0.0033 32.6 11.6 125 374-521 127-263 (396)
311 PF01487 DHquinase_I: Type I 3 51.8 27 0.00058 34.9 5.3 65 104-168 111-182 (224)
312 PRK13209 L-xylulose 5-phosphat 51.6 2.4E+02 0.0053 28.7 12.5 34 286-319 24-67 (283)
313 cd01572 QPRTase Quinolinate ph 51.5 43 0.00094 34.9 7.0 65 282-356 188-255 (268)
314 PF05690 ThiG: Thiazole biosyn 51.4 35 0.00076 35.3 6.0 85 349-449 145-229 (247)
315 TIGR00674 dapA dihydrodipicoli 51.4 86 0.0019 32.6 9.2 96 343-448 26-124 (285)
316 PRK07695 transcriptional regul 51.1 36 0.00078 33.4 6.0 35 121-155 18-52 (201)
317 TIGR03572 WbuZ glycosyl amidat 50.7 2.1E+02 0.0046 28.5 11.6 120 285-424 85-227 (232)
318 PRK05567 inosine 5'-monophosph 50.6 38 0.00082 38.2 6.8 50 106-155 216-265 (486)
319 cd01568 QPRTase_NadC Quinolina 50.5 49 0.0011 34.5 7.2 66 282-355 187-255 (269)
320 PF01645 Glu_synthase: Conserv 50.4 5.4 0.00012 43.6 0.1 97 282-391 212-330 (368)
321 PF00899 ThiF: ThiF family; I 50.4 51 0.0011 30.0 6.6 68 310-390 57-124 (135)
322 cd04727 pdxS PdxS is a subunit 49.9 2.2E+02 0.0048 30.3 11.7 138 286-445 77-246 (283)
323 cd04501 SGNH_hydrolase_like_4 49.8 32 0.0007 32.4 5.3 54 337-390 46-103 (183)
324 cd00408 DHDPS-like Dihydrodipi 49.8 1.2E+02 0.0025 31.3 9.8 89 349-448 32-123 (281)
325 PRK08526 threonine dehydratase 49.7 1.3E+02 0.0028 33.2 10.7 120 373-522 81-205 (403)
326 PRK05437 isopentenyl pyrophosp 49.7 3.3E+02 0.0072 29.5 13.6 57 383-451 261-320 (352)
327 PRK07565 dihydroorotate dehydr 49.6 1.7E+02 0.0036 31.3 11.2 89 326-426 101-199 (334)
328 PRK07428 nicotinate-nucleotide 49.4 77 0.0017 33.6 8.5 66 284-356 204-272 (288)
329 cd00950 DHDPS Dihydrodipicolin 49.1 96 0.0021 32.0 9.1 89 349-448 35-126 (284)
330 PRK15447 putative protease; Pr 49.1 84 0.0018 33.2 8.8 67 349-424 29-95 (301)
331 PRK07591 threonine synthase; V 48.9 1.5E+02 0.0034 32.7 11.1 120 373-521 150-283 (421)
332 PRK11761 cysM cysteine synthas 48.6 1.8E+02 0.0039 30.5 11.1 122 374-522 77-204 (296)
333 PRK00230 orotidine 5'-phosphat 48.5 3E+02 0.0066 27.8 13.1 140 287-445 71-228 (230)
334 PRK07709 fructose-bisphosphate 48.4 2.8E+02 0.0061 29.4 12.4 154 286-447 32-202 (285)
335 TIGR01093 aroD 3-dehydroquinat 48.1 36 0.00078 34.3 5.6 61 104-164 116-182 (228)
336 PRK07476 eutB threonine dehydr 48.1 1.6E+02 0.0034 31.2 10.7 118 374-521 81-203 (322)
337 PLN02565 cysteine synthase 48.0 1.8E+02 0.0038 31.1 11.0 122 375-522 82-209 (322)
338 cd04735 OYE_like_4_FMN Old yel 47.8 1.9E+02 0.004 31.3 11.3 131 280-424 133-313 (353)
339 cd02808 GltS_FMN Glutamate syn 47.8 2.1E+02 0.0046 31.4 11.9 118 292-424 179-314 (392)
340 PLN02741 riboflavin synthase 47.7 54 0.0012 32.8 6.6 54 209-264 24-84 (194)
341 PRK08639 threonine dehydratase 47.5 1.5E+02 0.0033 32.7 10.8 121 373-522 86-216 (420)
342 KOG2733 Uncharacterized membra 47.4 39 0.00085 37.1 5.9 71 86-163 67-139 (423)
343 COG0352 ThiE Thiamine monophos 47.4 2.2E+02 0.0049 28.8 11.1 133 287-446 72-208 (211)
344 TIGR02356 adenyl_thiF thiazole 47.4 78 0.0017 31.3 7.8 66 311-389 77-142 (202)
345 PLN03013 cysteine synthase 47.4 1.5E+02 0.0033 33.2 10.7 123 375-523 190-318 (429)
346 KOG2178 Predicted sugar kinase 47.2 17 0.00036 40.0 3.2 80 487-573 283-374 (409)
347 TIGR03249 KdgD 5-dehydro-4-deo 47.2 1.6E+02 0.0034 30.9 10.4 97 286-389 29-136 (296)
348 cd04729 NanE N-acetylmannosami 47.1 1.9E+02 0.0041 28.7 10.6 106 290-424 34-150 (219)
349 cd01485 E1-1_like Ubiquitin ac 46.8 88 0.0019 30.9 8.0 66 312-389 78-144 (198)
350 PF00701 DHDPS: Dihydrodipicol 46.7 1.2E+02 0.0025 31.5 9.3 173 342-539 28-204 (289)
351 PRK06110 hypothetical protein; 46.7 2E+02 0.0044 30.4 11.3 118 374-522 84-206 (322)
352 cd00952 CHBPH_aldolase Trans-o 46.7 2.6E+02 0.0056 29.6 12.0 99 286-389 32-141 (309)
353 cd02810 DHOD_DHPD_FMN Dihydroo 46.7 3.4E+02 0.0074 27.9 12.7 94 326-427 98-199 (289)
354 cd08556 GDPD Glycerophosphodie 46.4 1.6E+02 0.0034 27.6 9.5 40 371-423 148-187 (189)
355 COG0646 MetH Methionine syntha 46.2 66 0.0014 34.4 7.2 63 105-168 113-193 (311)
356 cd00947 TBP_aldolase_IIB Tagat 46.1 1.6E+02 0.0036 31.0 10.2 119 325-447 68-195 (276)
357 PRK08385 nicotinate-nucleotide 46.0 73 0.0016 33.6 7.6 67 285-356 191-260 (278)
358 PRK08610 fructose-bisphosphate 46.0 1.8E+02 0.004 30.8 10.6 153 286-447 32-202 (286)
359 COG0821 gcpE 1-hydroxy-2-methy 45.9 81 0.0018 34.3 7.9 143 290-448 43-194 (361)
360 cd03332 LMO_FMN L-Lactate 2-mo 45.7 49 0.0011 36.5 6.5 66 285-359 263-341 (383)
361 TIGR00187 ribE riboflavin synt 45.3 59 0.0013 32.6 6.5 55 209-265 23-85 (200)
362 TIGR00736 nifR3_rel_arch TIM-b 44.9 55 0.0012 33.6 6.4 70 290-365 155-230 (231)
363 cd00953 KDG_aldolase KDG (2-ke 44.9 1.8E+02 0.004 30.2 10.4 94 287-389 24-127 (279)
364 TIGR00259 thylakoid_BtpA membr 44.9 97 0.0021 32.4 8.2 72 281-357 154-229 (257)
365 TIGR00010 hydrolase, TatD fami 44.9 2.6E+02 0.0056 27.5 11.1 101 285-391 16-129 (252)
366 PLN02550 threonine dehydratase 44.9 1.9E+02 0.0041 33.8 11.3 120 374-523 171-296 (591)
367 cd02933 OYE_like_FMN Old yello 44.7 3.8E+02 0.0082 28.8 13.0 125 280-424 141-314 (338)
368 PRK07048 serine/threonine dehy 44.7 1.7E+02 0.0037 30.8 10.3 119 374-522 86-209 (321)
369 cd02940 DHPD_FMN Dihydropyrimi 44.7 2.6E+02 0.0057 29.3 11.6 48 368-425 152-201 (299)
370 cd01492 Aos1_SUMO Ubiquitin ac 44.2 1.2E+02 0.0025 30.0 8.4 64 312-389 78-141 (197)
371 PF07521 RMMBL: RNA-metabolisi 43.6 21 0.00045 26.8 2.3 25 130-154 6-31 (43)
372 PRK08185 hypothetical protein; 43.6 3.6E+02 0.0077 28.6 12.3 118 325-446 67-196 (283)
373 COG1862 YajC Preprotein transl 43.4 41 0.00088 30.1 4.5 43 214-257 37-79 (97)
374 PRK10425 DNase TatD; Provision 43.4 2.4E+02 0.0051 29.2 10.9 100 287-390 19-128 (258)
375 PRK05585 yajC preprotein trans 43.4 48 0.001 30.0 5.1 42 215-257 47-88 (106)
376 PRK08206 diaminopropionate amm 43.4 1.6E+02 0.0034 32.5 10.1 126 374-522 130-266 (399)
377 TIGR00742 yjbN tRNA dihydrouri 43.4 54 0.0012 35.1 6.3 65 289-360 147-228 (318)
378 COG1646 Predicted phosphate-bi 43.1 77 0.0017 32.8 6.9 70 328-423 17-92 (240)
379 PF01116 F_bP_aldolase: Fructo 43.0 1.8E+02 0.0038 30.8 10.0 119 325-447 72-203 (287)
380 PLN02535 glycolate oxidase 42.9 2.2E+02 0.0048 31.2 10.9 33 383-427 278-310 (364)
381 PRK06793 fliI flagellum-specif 42.8 2.9E+02 0.0062 31.1 12.0 242 164-449 29-294 (432)
382 PRK06806 fructose-bisphosphate 42.8 70 0.0015 33.7 6.9 57 107-164 75-131 (281)
383 PF01729 QRPTase_C: Quinolinat 42.7 51 0.0011 32.1 5.5 63 286-355 90-155 (169)
384 PRK05638 threonine synthase; V 42.6 1.8E+02 0.0039 32.3 10.5 118 373-520 125-252 (442)
385 PRK05848 nicotinate-nucleotide 42.5 1.1E+02 0.0023 32.3 8.2 65 285-356 191-258 (273)
386 PRK13125 trpA tryptophan synth 42.3 3.9E+02 0.0084 27.2 14.1 52 329-389 79-135 (244)
387 PLN02979 glycolate oxidase 42.1 1.5E+02 0.0032 32.7 9.4 61 115-181 107-168 (366)
388 COG0036 Rpe Pentose-5-phosphat 41.9 3.9E+02 0.0084 27.5 11.7 64 286-354 74-137 (220)
389 TIGR01858 tag_bisphos_ald clas 41.9 2.9E+02 0.0062 29.3 11.3 156 286-447 30-199 (282)
390 KOG2550 IMP dehydrogenase/GMP 41.8 44 0.00095 37.2 5.3 46 111-156 244-289 (503)
391 COG0061 nadF NAD kinase [Coenz 41.7 23 0.00049 37.1 3.1 36 486-521 162-201 (281)
392 cd01573 modD_like ModD; Quinol 41.6 1E+02 0.0022 32.3 7.9 66 284-356 191-259 (272)
393 PRK02083 imidazole glycerol ph 41.6 59 0.0013 33.1 6.1 86 286-386 156-251 (253)
394 TIGR01303 IMP_DH_rel_1 IMP deh 41.5 40 0.00088 38.1 5.2 50 107-156 214-263 (475)
395 PRK08072 nicotinate-nucleotide 41.5 68 0.0015 33.8 6.6 65 282-356 194-261 (277)
396 PLN02495 oxidoreductase, actin 41.4 5.3E+02 0.011 28.5 16.1 149 282-453 125-323 (385)
397 cd04731 HisF The cyclase subun 41.3 3.8E+02 0.0083 26.9 13.6 130 285-436 82-235 (243)
398 TIGR00167 cbbA ketose-bisphosp 41.3 2.3E+02 0.0051 30.0 10.6 151 286-447 32-205 (288)
399 PRK12290 thiE thiamine-phospha 41.1 2.2E+02 0.0047 32.2 10.6 134 287-446 268-414 (437)
400 cd00452 KDPG_aldolase KDPG and 41.0 2.4E+02 0.0053 27.4 10.1 105 285-427 65-174 (190)
401 PRK05886 yajC preprotein trans 41.0 51 0.0011 30.1 4.8 42 215-257 33-74 (109)
402 cd04734 OYE_like_3_FMN Old yel 40.9 4.3E+02 0.0093 28.4 12.7 132 280-424 130-315 (343)
403 PRK01130 N-acetylmannosamine-6 40.8 82 0.0018 31.3 6.8 65 286-357 129-204 (221)
404 TIGR02313 HpaI-NOT-DapA 2,4-di 40.6 3E+02 0.0065 28.8 11.3 99 286-389 24-133 (294)
405 TIGR01048 lysA diaminopimelate 40.6 79 0.0017 34.5 7.2 74 85-171 73-149 (417)
406 TIGR01036 pyrD_sub2 dihydrooro 40.6 2.8E+02 0.0061 29.9 11.2 117 296-424 166-317 (335)
407 PRK07896 nicotinate-nucleotide 40.4 1E+02 0.0022 32.8 7.6 65 285-356 208-275 (289)
408 COG4043 Preprotein translocase 40.4 36 0.00078 30.8 3.6 30 212-242 26-55 (111)
409 cd00952 CHBPH_aldolase Trans-o 40.3 2E+02 0.0042 30.5 9.9 90 349-448 43-134 (309)
410 cd08567 GDPD_SpGDE_like Glycer 40.0 1.8E+02 0.0039 29.3 9.3 42 369-423 217-258 (263)
411 PRK00043 thiE thiamine-phospha 40.0 1.6E+02 0.0036 28.4 8.7 45 120-164 24-68 (212)
412 cd02922 FCB2_FMN Flavocytochro 39.9 76 0.0016 34.4 6.8 94 285-384 223-335 (344)
413 cd06828 PLPDE_III_DapDC Type I 39.7 96 0.0021 33.0 7.6 73 85-170 51-126 (373)
414 KOG3111 D-ribulose-5-phosphate 39.7 4.3E+02 0.0093 26.9 12.3 140 286-447 77-220 (224)
415 cd04738 DHOD_2_like Dihydrooro 39.6 5E+02 0.011 27.7 14.3 113 368-498 114-238 (327)
416 PF13742 tRNA_anti_2: OB-fold 39.5 1.6E+02 0.0034 26.0 7.6 57 186-243 33-99 (99)
417 PRK01231 ppnK inorganic polyph 39.3 23 0.0005 37.4 2.8 37 486-522 171-211 (295)
418 TIGR00222 panB 3-methyl-2-oxob 39.3 4.8E+02 0.01 27.4 12.3 131 279-424 18-180 (263)
419 cd08579 GDPD_memb_like Glycero 39.2 2.1E+02 0.0046 28.1 9.5 42 369-423 176-217 (220)
420 PRK10812 putative DNAse; Provi 39.0 3.4E+02 0.0074 28.1 11.3 98 287-390 24-131 (265)
421 cd03316 MR_like Mandelate race 38.9 1.6E+02 0.0034 31.3 9.1 63 106-171 126-197 (357)
422 PLN02898 HMP-P kinase/thiamin- 38.9 3.2E+02 0.0069 30.9 11.9 139 287-449 358-500 (502)
423 TIGR02079 THD1 threonine dehyd 38.8 2.8E+02 0.006 30.6 11.1 121 373-522 77-205 (409)
424 cd08205 RuBisCO_IV_RLP Ribulos 38.7 3.3E+02 0.0071 29.8 11.5 131 290-435 153-297 (367)
425 PRK11815 tRNA-dihydrouridine s 38.7 63 0.0014 34.7 6.0 65 289-360 157-238 (333)
426 cd02929 TMADH_HD_FMN Trimethyl 38.7 4.5E+02 0.0097 28.6 12.6 132 280-424 139-319 (370)
427 PRK02412 aroD 3-dehydroquinate 38.7 69 0.0015 33.0 6.0 60 105-164 134-200 (253)
428 TIGR01747 diampropi_NH3ly diam 38.7 3.8E+02 0.0082 29.4 12.0 125 374-521 108-244 (376)
429 cd01487 E1_ThiF_like E1_ThiF_l 38.6 1.3E+02 0.0028 29.1 7.6 66 311-389 54-120 (174)
430 smart00729 Elp3 Elongator prot 38.5 2.3E+02 0.0049 26.4 9.2 51 107-157 87-146 (216)
431 cd06840 PLPDE_III_Bif_AspK_Dap 38.4 57 0.0012 35.3 5.6 56 83-148 56-116 (368)
432 TIGR02991 ectoine_eutB ectoine 38.2 3.8E+02 0.0083 28.3 11.7 118 374-521 81-203 (317)
433 PF01645 Glu_synthase: Conserv 38.1 79 0.0017 34.7 6.6 120 291-424 167-303 (368)
434 PRK15456 universal stress prot 38.1 59 0.0013 29.4 5.0 37 481-518 97-141 (142)
435 PF04055 Radical_SAM: Radical 38.0 1.8E+02 0.004 25.8 8.2 40 105-144 75-114 (166)
436 PRK02645 ppnK inorganic polyph 38.0 27 0.00058 37.1 3.0 37 486-522 175-215 (305)
437 PRK09289 riboflavin synthase s 37.9 92 0.002 31.1 6.5 55 209-265 23-84 (194)
438 cd02801 DUS_like_FMN Dihydrour 37.8 4E+02 0.0088 26.1 13.4 116 290-424 74-213 (231)
439 TIGR00737 nifR3_yhdG putative 37.8 4.2E+02 0.0092 27.9 12.0 117 290-424 82-222 (319)
440 PRK08198 threonine dehydratase 37.8 3.5E+02 0.0077 29.5 11.7 156 327-523 37-208 (404)
441 PRK09140 2-dehydro-3-deoxy-6-p 37.7 4.2E+02 0.0092 26.5 11.3 101 290-423 29-130 (206)
442 cd06556 ICL_KPHMT Members of t 37.5 2.9E+02 0.0064 28.4 10.4 53 484-537 164-216 (240)
443 cd06830 PLPDE_III_ADC Type III 37.3 77 0.0017 34.8 6.5 71 86-168 66-142 (409)
444 cd01987 USP_OKCHK USP domain i 37.3 68 0.0015 28.0 5.1 42 477-518 73-123 (124)
445 PLN00011 cysteine synthase 37.2 4.5E+02 0.0097 27.9 12.1 124 374-523 83-212 (323)
446 cd00954 NAL N-Acetylneuraminic 37.2 2.1E+02 0.0045 29.8 9.4 94 342-447 27-126 (288)
447 TIGR00735 hisF imidazoleglycer 37.1 4.7E+02 0.01 26.7 14.2 128 284-435 84-240 (254)
448 PRK02649 ppnK inorganic polyph 37.0 30 0.00065 36.9 3.1 35 487-521 178-216 (305)
449 PRK07315 fructose-bisphosphate 37.0 1.1E+02 0.0024 32.5 7.3 55 108-164 79-133 (293)
450 PRK08185 hypothetical protein; 37.0 1.6E+02 0.0034 31.2 8.4 57 107-164 69-125 (283)
451 TIGR02151 IPP_isom_2 isopenten 36.8 5E+02 0.011 27.8 12.5 155 274-451 118-313 (333)
452 PRK05835 fructose-bisphosphate 36.8 3.7E+02 0.0079 28.9 11.2 153 286-447 31-203 (307)
453 PRK14024 phosphoribosyl isomer 36.6 40 0.00088 34.3 3.9 73 288-368 151-235 (241)
454 PTZ00344 pyridoxal kinase; Pro 36.6 2.2E+02 0.0047 29.7 9.4 113 277-390 53-182 (296)
455 PRK05892 nucleoside diphosphat 36.6 2.6E+02 0.0056 27.0 9.2 91 148-243 58-156 (158)
456 PRK05286 dihydroorotate dehydr 36.5 5.7E+02 0.012 27.5 13.9 114 368-499 124-248 (344)
457 COG0800 Eda 2-keto-3-deoxy-6-p 36.3 2.3E+02 0.0051 28.8 9.1 105 299-423 15-132 (211)
458 cd00757 ThiF_MoeB_HesA_family 36.3 1.4E+02 0.0031 29.8 7.8 66 311-389 77-142 (228)
459 cd06448 L-Ser-dehyd Serine deh 36.2 2.6E+02 0.0056 29.6 10.0 121 374-522 65-194 (316)
460 TIGR02355 moeB molybdopterin s 36.0 1.4E+02 0.0031 30.4 7.8 67 311-390 80-146 (240)
461 KOG2335 tRNA-dihydrouridine sy 35.8 89 0.0019 34.2 6.4 89 290-385 162-269 (358)
462 TIGR01124 ilvA_2Cterm threonin 35.7 3.4E+02 0.0074 30.9 11.5 121 373-523 78-204 (499)
463 PRK03512 thiamine-phosphate py 35.7 4.6E+02 0.01 26.2 11.8 133 287-445 70-207 (211)
464 cd06831 PLPDE_III_ODC_like_AZI 35.5 62 0.0013 35.5 5.4 57 83-148 57-116 (394)
465 cd00502 DHQase_I Type I 3-dehy 35.5 1.8E+02 0.0038 29.1 8.3 61 104-164 111-177 (225)
466 TIGR00262 trpA tryptophan synt 35.4 5.2E+02 0.011 26.7 14.2 89 337-444 102-194 (256)
467 PRK10415 tRNA-dihydrouridine s 35.3 4.5E+02 0.0097 28.0 11.7 131 291-432 28-177 (321)
468 PRK00748 1-(5-phosphoribosyl)- 35.3 4.5E+02 0.0098 26.0 12.2 130 284-435 84-231 (233)
469 PRK04169 geranylgeranylglycery 35.2 1.1E+02 0.0024 31.4 6.8 71 328-423 9-82 (232)
470 PRK12737 gatY tagatose-bisphos 35.2 4.5E+02 0.0098 27.8 11.5 156 286-447 32-201 (284)
471 PF04551 GcpE: GcpE protein; 35.1 65 0.0014 35.2 5.3 49 120-171 34-82 (359)
472 PLN02935 Bifunctional NADH kin 35.1 30 0.00065 39.4 2.9 36 486-521 376-415 (508)
473 PRK04539 ppnK inorganic polyph 35.1 34 0.00073 36.3 3.2 35 487-521 178-216 (296)
474 cd04740 DHOD_1B_like Dihydroor 35.1 5.3E+02 0.011 26.7 15.0 88 326-425 89-187 (296)
475 PRK07107 inosine 5-monophospha 35.1 64 0.0014 36.8 5.6 50 105-155 230-279 (502)
476 TIGR00046 RNA methyltransferas 34.9 2.9E+02 0.0062 28.1 9.8 113 220-348 31-159 (240)
477 cd04739 DHOD_like Dihydroorota 34.9 5.6E+02 0.012 27.3 12.4 47 371-427 150-198 (325)
478 TIGR01275 ACC_deam_rel pyridox 34.7 2.9E+02 0.0064 28.8 10.1 41 480-520 156-204 (311)
479 cd00564 TMP_TenI Thiamine mono 34.7 1.4E+02 0.0031 28.1 7.2 44 120-163 15-58 (196)
480 PRK09856 fructoselysine 3-epim 34.4 3.3E+02 0.0072 27.4 10.3 123 286-414 16-171 (275)
481 PRK12857 fructose-1,6-bisphosp 34.4 4.4E+02 0.0096 27.9 11.3 156 286-447 32-201 (284)
482 PRK08644 thiamine biosynthesis 34.4 1.5E+02 0.0033 29.6 7.6 65 313-390 85-150 (212)
483 PRK09532 DNA polymerase III su 34.3 5.3E+02 0.012 31.7 13.3 127 287-418 23-228 (874)
484 PRK08255 salicylyl-CoA 5-hydro 34.0 3.2E+02 0.0069 32.7 11.4 132 280-424 540-717 (765)
485 PRK05690 molybdopterin biosynt 33.9 1.5E+02 0.0033 30.3 7.6 66 311-389 88-153 (245)
486 PF01207 Dus: Dihydrouridine s 33.8 54 0.0012 34.7 4.5 67 286-359 141-217 (309)
487 TIGR00078 nadC nicotinate-nucl 33.8 1.3E+02 0.0027 31.5 7.1 63 282-354 184-249 (265)
488 cd02911 arch_FMN Archeal FMN-b 33.5 79 0.0017 32.2 5.5 65 283-357 152-222 (233)
489 TIGR00693 thiE thiamine-phosph 33.5 1.4E+02 0.0031 28.7 7.1 47 120-166 16-62 (196)
490 TIGR01768 GGGP-family geranylg 33.4 96 0.0021 31.7 6.0 63 337-424 15-78 (223)
491 PRK00561 ppnK inorganic polyph 33.4 37 0.0008 35.4 3.1 35 487-521 134-172 (259)
492 PLN02493 probable peroxisomal 33.3 2.4E+02 0.0053 31.0 9.4 91 307-424 212-308 (367)
493 PRK09140 2-dehydro-3-deoxy-6-p 33.2 2.1E+02 0.0045 28.7 8.3 64 286-359 114-183 (206)
494 PRK12738 kbaY tagatose-bisphos 33.0 5.4E+02 0.012 27.3 11.7 156 286-447 32-201 (286)
495 PRK15108 biotin synthase; Prov 33.0 1.1E+02 0.0023 33.1 6.6 30 107-138 125-154 (345)
496 cd00423 Pterin_binding Pterin 32.8 1.7E+02 0.0038 30.0 7.9 53 120-174 27-87 (258)
497 PRK01911 ppnK inorganic polyph 32.8 38 0.00082 35.9 3.1 35 487-521 173-211 (292)
498 COG0084 TatD Mg-dependent DNas 32.8 2.6E+02 0.0056 29.1 9.1 108 280-390 14-132 (256)
499 cd01563 Thr-synth_1 Threonine 32.8 4.8E+02 0.01 27.3 11.4 117 375-522 85-214 (324)
500 TIGR03844 cysteate_syn cysteat 32.7 2.5E+02 0.0055 31.0 9.6 88 472-562 99-190 (398)
No 1
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=8.5e-140 Score=1140.74 Aligned_cols=503 Identities=89% Similarity=1.320 Sum_probs=465.7
Q ss_pred CCCcccccccchHhhhcCCCCCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Q 007936 82 DSSSIEVDSVTEAELKENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKG 161 (584)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~ 161 (584)
+++++++|.+.+++|.|++++++|||||||||||+|+++|+|++|+++|||+||||||||++|+|+++++++|++++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~ 81 (509)
T PLN02762 2 DSSGIDVDVVTEAELRENGFRSTRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKG 81 (509)
T ss_pred ccccccccccchhhhhhccccCCCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 46679999999999999998668999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeecCCCeEEEeecCCCCceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEE
Q 007936 162 FAVAIMMDTEGSEIHMGDLSGPPSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEK 241 (584)
Q Consensus 162 ~~i~I~lDl~GpkIR~G~~~~~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~ 241 (584)
++++||+||+|||||+|++.++.++.|++|+.|+|+.+...+..+++.+++||++|++++++||.|++|||+|.|+|+++
T Consensus 82 ~~vaIl~Dl~GPkIR~g~~~~~~~i~l~~G~~v~lt~~~~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~ 161 (509)
T PLN02762 82 FAVAVMMDTEGSEIHMGDLGGASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEK 161 (509)
T ss_pred CceEEEecCCCCceEEEecCCCccEEecCCCEEEEeCCccCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEE
Confidence 99999999999999999997545799999999999987433433457899999999999999999999999999999999
Q ss_pred eCCeEEEEEEcCceeCCCceeeeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhh
Q 007936 242 IGPDVKCRCTDPGLLLPRANLTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAAR 321 (584)
Q Consensus 242 ~~~~i~c~v~~~G~l~s~Kgvnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~ 321 (584)
+++.+.|+|.+||.|++|||||||++|+.+||+.+++|.||+||++||+||+++|+|||++|||++++||+++|++|...
T Consensus 162 ~~~~v~~~v~~~G~l~~~KgvNl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~ 241 (509)
T PLN02762 162 IGPDVKCKCTDPGLLLPRANLTFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAAR 241 (509)
T ss_pred ECCEEEEEEEeCcEEcCCCceeeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999644
Q ss_pred cCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC
Q 007936 322 SRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPT 401 (584)
Q Consensus 322 ~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~ 401 (584)
+.+.+++||||||+++|++|||||++++|||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+
T Consensus 242 g~~~~~~IiAKIE~~~av~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~ 321 (509)
T PLN02762 242 SRDSDIGVIAKIESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPT 321 (509)
T ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCC
Confidence 33337999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHH
Q 007936 402 PTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSA 481 (584)
Q Consensus 402 PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sa 481 (584)
|||||++||+|||+||+||+|||+|||+|+||+|||++|++||+++|+++.+...+..+..+........+..+++|.+|
T Consensus 322 PTRAEvsDVaNAVlDGtDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa 401 (509)
T PLN02762 322 PTRAEVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSA 401 (509)
T ss_pred CCchhHHHHHHHHHhCCCEEEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875332111111111111111235679999999
Q ss_pred HHHHhhcCCcEEEEccCCchHHHHHhccCCCCcEEEEcCchhhhcccccccccEEEEecCCCCHHHHHHHHHHHHHHcCC
Q 007936 482 AKMANNLEVDALFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSDDMESNLNRTFSLLKARGM 561 (584)
Q Consensus 482 v~~A~~l~a~aIvv~T~sG~tA~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~~~~d~~~~i~~~~~~~k~~g~ 561 (584)
+++|++++|++||+||+||+||+++|||||.|||||+|++++++|+|+|+|||+|++.++..+.+++++.++++++++|+
T Consensus 402 ~~~A~~l~a~aIv~~T~sG~tA~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~ 481 (509)
T PLN02762 402 AKMANNLGVDAIFVYTKHGHMASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRLDFSDDMESNLNKTFSLLKARGM 481 (509)
T ss_pred HHHHhhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCCCCEEEEEecC-----CceEEEEEcC
Q 007936 562 IKSGDLVIAVSDV-----LQSIQVMNVP 584 (584)
Q Consensus 562 i~~GD~Vvvv~g~-----~~sI~v~~v~ 584 (584)
+++||.||+++|. +|+|+|++||
T Consensus 482 ~~~GD~VVv~~g~~~~g~tn~i~v~~v~ 509 (509)
T PLN02762 482 IKSGDLVIAVSDLTPSSMLQSIQVRNVP 509 (509)
T ss_pred CCCCCEEEEEeCCCCCCCceEEEEEEcC
Confidence 9999999999983 6999999997
No 2
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=3.6e-132 Score=1080.58 Aligned_cols=470 Identities=34% Similarity=0.554 Sum_probs=437.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHh-CCceEEEeecCCCeEEEeec
Q 007936 102 RSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEK-GFAVAIMMDTEGSEIHMGDL 180 (584)
Q Consensus 102 ~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~-~~~i~I~lDl~GpkIR~G~~ 180 (584)
..+|||||||||||+|+++|+|++|+++|||+||||||||++|+|+++++++|+++++. +++++||+||+|||||+|.+
T Consensus 35 ~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g~~ 114 (513)
T PTZ00066 35 LRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTGFL 114 (513)
T ss_pred ccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeeccc
Confidence 45799999999999999999999999999999999999999999999999999999996 89999999999999999999
Q ss_pred CCCCceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCc
Q 007936 181 SGPPSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRA 260 (584)
Q Consensus 181 ~~~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~K 260 (584)
.+++++.|++|+.|+|+.+. ...++++.|++||++|++++++||+|++|||++.|+|++++++.+.|+|++||.|++||
T Consensus 115 ~~~~~i~l~~G~~~~l~~~~-~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~gG~l~~~K 193 (513)
T PTZ00066 115 KNHKPITLKEGQTLKITTDY-TFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVHDDYIITKVLNNATIGERK 193 (513)
T ss_pred CCCCeEEeCCCCEEEEecCC-ccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCc
Confidence 75457999999999999762 12345678999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCcccCCccccCCCCCccCHhhh-HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHH
Q 007936 261 NLTFWRDGSLVRERNAMLPTISPKDWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSL 339 (584)
Q Consensus 261 gvnf~~~~~~lp~~~~~lp~lt~kD~~dI-~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av 339 (584)
||| +||..+++|.||++|++|| +||+++|+|||++|||++++||+++|++|. +.+.+++|||||||++|+
T Consensus 194 gvn-------lpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~--~~g~~~~IiAKIE~~~av 264 (513)
T PTZ00066 194 NMN-------LPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLG--ERGRHIKIIPKIENIEGL 264 (513)
T ss_pred ccc-------cCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHH--hCCCCceEEEEECCHHHH
Confidence 999 9999999999999999998 899999999999999999999999999994 445679999999999999
Q ss_pred hcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccc
Q 007936 340 KNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRAD 419 (584)
Q Consensus 340 ~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D 419 (584)
+|||||++++|||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||+|||+||+|
T Consensus 265 ~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~D 344 (513)
T PTZ00066 265 INFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTD 344 (513)
T ss_pred HHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCC
Q 007936 420 ALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKT 499 (584)
Q Consensus 420 ~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~s 499 (584)
|+|||+|||+|+||+|||++|++||+++|+++.+..++.. .......+.+..+++|.+|+++|++++|++|++||+|
T Consensus 345 avMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~---~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~S 421 (513)
T PTZ00066 345 CVMLSGETANGKFPVEAVNIMAKICFEAETCIDYRVLYHA---IHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTET 421 (513)
T ss_pred EEEecchhcCCcCHHHHHHHHHHHHHHHhhccchHHhhhh---hhccccCCCchhhHHHHHHHHHHHhCCCCEEEEECCC
Confidence 9999999999999999999999999999986543221111 1110111224568999999999999999999999999
Q ss_pred chHHHHHhccCCCCcEEEEcCchhhhcccccccccEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC-----
Q 007936 500 GHMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSDV----- 574 (584)
Q Consensus 500 G~tA~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~~~~d~~~~i~~~~~~~k~~g~i~~GD~Vvvv~g~----- 574 (584)
|+||+++|||||.|||||+|++++++|+|+|+|||+|++++...+.++.++.+++++++.|++++||.||+++|+
T Consensus 422 G~TAr~iSk~RP~~pIia~t~~~~~~R~L~L~wGV~p~~~~~~~~~~~~i~~a~~~~~~~g~~~~GD~vVv~~g~~~~~~ 501 (513)
T PTZ00066 422 GNTARLISKYRPSCTILALSASPSVVKSLSVARGVTTYVVNSFQGTDVVIRNAIALAKERGLVESGDSAIAVHGVKEEVA 501 (513)
T ss_pred cHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCC
Confidence 999999999999999999999999999999999999999988889999999999999999999999999999883
Q ss_pred --CceEEEEEcC
Q 007936 575 --LQSIQVMNVP 584 (584)
Q Consensus 575 --~~sI~v~~v~ 584 (584)
+|++||.+||
T Consensus 502 g~tn~irv~~v~ 513 (513)
T PTZ00066 502 GSSNLMKVVKIP 513 (513)
T ss_pred CCCeEEEEEEcC
Confidence 6999999998
No 3
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=1.3e-129 Score=1061.34 Aligned_cols=472 Identities=33% Similarity=0.546 Sum_probs=434.7
Q ss_pred cCCCCCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEE
Q 007936 98 ENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHM 177 (584)
Q Consensus 98 ~~~~~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~ 177 (584)
+.++ ++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++.|++++||+||+|||||+
T Consensus 15 ~~~~-~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g~~i~Il~Dl~GPkIR~ 93 (511)
T PLN02461 15 ADGL-RRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTGILCAVMLDTKGPEIRT 93 (511)
T ss_pred Cccc-cCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEeeCCCCceec
Confidence 3454 468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEe--CCeEEEEEEcCce
Q 007936 178 GDLSGPPSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKI--GPDVKCRCTDPGL 255 (584)
Q Consensus 178 G~~~~~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~--~~~i~c~v~~~G~ 255 (584)
|.+.+++++.|++|+.|+|+.+. ...++++.|++||++|++.+++||+|++|||++.|+|++++ ++.++|+|.+||.
T Consensus 94 g~~~~~~~i~l~~G~~v~lt~~~-~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~ 172 (511)
T PLN02461 94 GFLKDGKPVQLKQGQEITITTDY-SIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAM 172 (511)
T ss_pred cccCCCCceecCCCCEEEEecCC-ccCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcE
Confidence 99976457999999999999763 22345678999999999999999999999999999999987 6899999999999
Q ss_pred eCCCceeeeccCCcccCCccccCCCCCccCHhhh-HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeec
Q 007936 256 LLPRANLTFWRDGSLVRERNAMLPTISPKDWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIE 334 (584)
Q Consensus 256 l~s~Kgvnf~~~~~~lp~~~~~lp~lt~kD~~dI-~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIE 334 (584)
|+++|||| +||..+++|.||+||++|| +||+++|+|||++|||++++||+++|+++. ..+.+++||||||
T Consensus 173 l~s~Kgvn-------lpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~--~~~~~~~IiAKIE 243 (511)
T PLN02461 173 LGERKNVN-------LPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLG--EHAKSILLISKVE 243 (511)
T ss_pred ecCCceee-------ecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHH--hCCCCCCEEEEEC
Confidence 99999999 9999999999999999998 799999999999999999999999999995 3456799999999
Q ss_pred CHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHH
Q 007936 335 SIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAV 414 (584)
Q Consensus 335 t~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav 414 (584)
|++|++||+||++++|||||||||||+|+|+|+||.+||+||+.|+++|||||+||||||||++||+|||||++||+|||
T Consensus 244 ~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV 323 (511)
T PLN02461 244 NQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAV 323 (511)
T ss_pred CHHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEE
Q 007936 415 RQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALF 494 (584)
Q Consensus 415 ~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIv 494 (584)
+||+||+|||+|||+|+||+|||++|++||+++|+++.+..++... ......+.+..+++|.+|+++|++++|++|+
T Consensus 324 ~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~---~~~~~~~~~~~~~ia~sav~~A~~l~a~aIi 400 (511)
T PLN02461 324 LDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYGALFKEI---MRSAPLPMSPLESLASSAVRTANKVKASLIV 400 (511)
T ss_pred HhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhh---cccccccCChHHHHHHHHHHHHHhCCCCEEE
Confidence 9999999999999999999999999999999999865432111111 0001112246789999999999999999999
Q ss_pred EccCCchHHHHHhccCCCCcEEEEcCc-------------hhhhcccccccccEEEEecC------CCCHHHHHHHHHHH
Q 007936 495 VYTKTGHMASLLSRCRPDCPIFAFTST-------------TSVRRRLNLRWGLIPFRLSF------SDDMESNLNRTFSL 555 (584)
Q Consensus 495 v~T~sG~tA~~lSr~RP~~PIiavT~~-------------~~~aR~l~l~~GV~P~~~~~------~~d~~~~i~~~~~~ 555 (584)
+||+||+||+++|||||.|||||+|++ ++++|+|+|+|||+|++++. ..+.++.++.++++
T Consensus 401 v~T~sG~tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i~~a~~~ 480 (511)
T PLN02461 401 VLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEH 480 (511)
T ss_pred EECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCHHHHHHHHHHH
Confidence 999999999999999999999999966 89999999999999998764 56889999999999
Q ss_pred HHHcCCCCCCCEEEEEec--CCceEEEEEc
Q 007936 556 LKARGMIKSGDLVIAVSD--VLQSIQVMNV 583 (584)
Q Consensus 556 ~k~~g~i~~GD~Vvvv~g--~~~sI~v~~v 583 (584)
+++.|++++||.||+++| .+|+++|.+|
T Consensus 481 ~~~~g~~~~Gd~vvvv~~~g~tn~i~v~~v 510 (511)
T PLN02461 481 AKKKGLCKPGDSVVALHRIGGASVIKILTV 510 (511)
T ss_pred HHHcCCCCCcCEEEEEecCCCCcEEEEEEe
Confidence 999999999999999987 4799999886
No 4
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=2.8e-129 Score=1053.13 Aligned_cols=463 Identities=34% Similarity=0.554 Sum_probs=433.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCCC
Q 007936 104 TRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSGP 183 (584)
Q Consensus 104 ~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~~ 183 (584)
||||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|++++++|++++||+||+|||||+|.+.++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~~~i~Il~Dl~GPkiR~g~~~~~ 80 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKKAAILLDTKGPEIRTMKLEGG 80 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCceeccccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCceee
Q 007936 184 PSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRANLT 263 (584)
Q Consensus 184 ~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~Kgvn 263 (584)
.++.|++|+.++|+.++. ..++++.++++|++|++++++||.|++|||++.|+|++++++.+.|+|++||.|++|||||
T Consensus 81 ~~i~l~~G~~~~l~~~~~-~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~~~~v~~~v~~~G~l~s~Kgvn 159 (470)
T PRK09206 81 NDVSLKAGQTFTFTTDKS-VVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVN 159 (470)
T ss_pred CeeeecCCCEEEEEecCc-cCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEEECCEecCCCcee
Confidence 469999999999997631 1235578999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCC-CCceEEEeecCHHHHhcH
Q 007936 264 FWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRD-SDIAVIAKIESIDSLKNL 342 (584)
Q Consensus 264 f~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~-~~i~IiAKIEt~~av~Nl 342 (584)
+||..+++|.||+||++||+||+++|+|||++|||++++||+++++++. ..| .++.|||||||++|++||
T Consensus 160 -------~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~--~~~~~~~~iiaKIEt~eav~nl 230 (470)
T PRK09206 160 -------LPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLK--AHGGENIQIISKIENQEGLNNF 230 (470)
T ss_pred -------ccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHH--HcCCCCceEEEEECCHHHHHhH
Confidence 9999999999999999999999999999999999999999999999995 344 479999999999999999
Q ss_pred HHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEe
Q 007936 343 EEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALM 422 (584)
Q Consensus 343 deIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~im 422 (584)
|||++++|||||||||||+|+|.++||.+||+|++.|+++|||||+||||||||++||+|||||++||+|||+||+||+|
T Consensus 231 deIl~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavM 310 (470)
T PRK09206 231 DEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVM 310 (470)
T ss_pred HHHHHhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCCchH
Q 007936 423 LSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGHM 502 (584)
Q Consensus 423 Ls~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~sG~t 502 (584)
||+|||+|+||+|||++|++||+++|+++.+. +..... ....+..+++|.+|+++|++++|++|++||+||+|
T Consensus 311 LS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~-----~~~~~~--~~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~t 383 (470)
T PRK09206 311 LSGESAKGKYPLEAVSIMATICERTDRVMNSR-----LESNND--NRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKS 383 (470)
T ss_pred EechhcCCCCHHHHHHHHHHHHHHHHhhcchh-----hhhhcc--ccCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHH
Confidence 99999999999999999999999999864322 110110 11135679999999999999999999999999999
Q ss_pred HHHHhccCCCCcEEEEcCchhhhcccccccccEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec------CCc
Q 007936 503 ASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSD------VLQ 576 (584)
Q Consensus 503 A~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~~~~d~~~~i~~~~~~~k~~g~i~~GD~Vvvv~g------~~~ 576 (584)
|+++|||||.|||||+|++++++|+|+|+|||+|++++...+.++++..++++++++|++++||.||+++| .+|
T Consensus 384 A~~is~~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~~~~g~tn 463 (470)
T PRK09206 384 ARSVRKYFPDATILALTTNEKTARQLVLSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQKGDVVVMVSGALVPSGTTN 463 (470)
T ss_pred HHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCe
Confidence 99999999999999999999999999999999999998888999999999999999999999999999987 369
Q ss_pred eEEEEEc
Q 007936 577 SIQVMNV 583 (584)
Q Consensus 577 sI~v~~v 583 (584)
+++|+++
T Consensus 464 ~i~v~~~ 470 (470)
T PRK09206 464 TASVHVL 470 (470)
T ss_pred EEEEEEC
Confidence 9999864
No 5
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=5.5e-129 Score=1050.14 Aligned_cols=463 Identities=33% Similarity=0.550 Sum_probs=434.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecC
Q 007936 102 RSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLS 181 (584)
Q Consensus 102 ~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~ 181 (584)
.++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|++++||+||+|||||+|.+.
T Consensus 2 ~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~~~i~Il~Dl~GpkiR~g~~~ 81 (476)
T PRK06247 2 KRNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETGRPIGILADLQGPKLRLGRFA 81 (476)
T ss_pred CCCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeeEEEeCCCCceeccccC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCce
Q 007936 182 GPPSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRAN 261 (584)
Q Consensus 182 ~~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~Kg 261 (584)
+ +++.|++|++|+|+.++. .++++.|+++|++|++++++||+|++|||++.|+|++++++.+.|+|++||.|++|||
T Consensus 82 ~-~~i~l~~G~~~~l~~~~~--~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kg 158 (476)
T PRK06247 82 D-GKVQLANGQTFRLDVDDA--PGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKG 158 (476)
T ss_pred C-CcEeccCCCEEEEEeccc--CCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCCc
Confidence 5 479999999999998743 3456789999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhc
Q 007936 262 LTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKN 341 (584)
Q Consensus 262 vnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~N 341 (584)
|| +||..+++|.||+||++||+||+++|+|||++|||++++||+++|+++ +.++.|||||||++|++|
T Consensus 159 vn-------~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l-----~~~~~iiaKIEt~eav~n 226 (476)
T PRK06247 159 VS-------LPGTVLSVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKII-----GGRVPVMAKIEKPQAIDR 226 (476)
T ss_pred cc-------cCCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh-----hhcCeEEEEECCHHHHHh
Confidence 99 999999999999999999999999999999999999999999999999 336899999999999999
Q ss_pred HHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceE
Q 007936 342 LEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADAL 421 (584)
Q Consensus 342 ldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~i 421 (584)
||||++++|||||||||||+++|+++|+.+||+|++.|+++|||||+||||||||++||+|||||++||+|||+||+||+
T Consensus 227 ldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~Dav 306 (476)
T PRK06247 227 LEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAV 306 (476)
T ss_pred HHHHHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCCch
Q 007936 422 MLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGH 501 (584)
Q Consensus 422 mLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~sG~ 501 (584)
|||+|||+|+||++||++|++||+++|+++.+...+. .... .......+++|.+|+++|+++++++|++||+||+
T Consensus 307 MLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~---~~~~--~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ 381 (476)
T PRK06247 307 MLSAETASGKYPVEAVRTMARIIRQVERDPTYPPLIH---AQRP--QPEATKRDAISYAARDIAERLDLAALVAYTSSGD 381 (476)
T ss_pred EEcchhcCCCCHHHHHHHHHHHHHHHhhccchhhhhh---hccc--ccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcH
Confidence 9999999999999999999999999998643321111 0111 1113567899999999999999999999999999
Q ss_pred HHHHHhccCCCCcEEEEcCchhhhcccccccccEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec-------C
Q 007936 502 MASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSD-------V 574 (584)
Q Consensus 502 tA~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~~~~d~~~~i~~~~~~~k~~g~i~~GD~Vvvv~g-------~ 574 (584)
||+++|||||.|||||+|++++++|+|+|+|||+|++++...+.++.+..++++++++|++++||.||+++| .
T Consensus 382 ta~~isk~RP~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~~~~~g~ 461 (476)
T PRK06247 382 TALRAARERPPLPILALTPNPETARRLALTWGVHCVVVDDARDTDDMVRRADRIALAEGFYKRGDRVVIVAGVPPGTPGS 461 (476)
T ss_pred HHHHHHhhCCCCCEEEECCCHHHHHHhhcccCCeeEecCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCC
Confidence 999999999999999999999999999999999999998888999999999999999999999999999987 3
Q ss_pred CceEEEEEcC
Q 007936 575 LQSIQVMNVP 584 (584)
Q Consensus 575 ~~sI~v~~v~ 584 (584)
+|+++|.+|+
T Consensus 462 tn~i~v~~v~ 471 (476)
T PRK06247 462 TNMLRIAYIG 471 (476)
T ss_pred CeEEEEEEeC
Confidence 6999999874
No 6
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-128 Score=1041.88 Aligned_cols=468 Identities=40% Similarity=0.640 Sum_probs=439.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecC
Q 007936 102 RSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLS 181 (584)
Q Consensus 102 ~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~ 181 (584)
+++|||||||||||+++++|+|++|+++||||||||||||++++|.+.++++|++++++|+|++||+||||||||+|.+.
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR~g~~~ 81 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLGRPVAILLDLKGPKIRTGKFK 81 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhCCceEEEEcCCCCcceeEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCce
Q 007936 182 GPPSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRAN 261 (584)
Q Consensus 182 ~~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~Kg 261 (584)
+ +.+.|+.|++++|+.+.....++++.++++|++|+++|++||+||+|||+++|+|.+++++.+.|+|.+||.|++|||
T Consensus 82 ~-~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~~v~~~v~n~G~l~~~Kg 160 (477)
T COG0469 82 G-GAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKG 160 (477)
T ss_pred C-CcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEeeCCEEEEEEEeCCCccCCCc
Confidence 7 579999999999998854334456899999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhc
Q 007936 262 LTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKN 341 (584)
Q Consensus 262 vnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~N 341 (584)
|| +||..+++|+||+||++||+|++++|+|||++|||++++|++++|+++... .+.+++||||||+++||+|
T Consensus 161 vN-------~pg~~l~~palteKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~-~~~~~~iiaKIE~~eav~N 232 (477)
T COG0469 161 VN-------LPGVDLSLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREILAET-GGRDVKIIAKIENQEAVDN 232 (477)
T ss_pred ee-------cCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHh-CCCCceEEEeecCHHHHhH
Confidence 99 999999999999999999999999999999999999999999999999632 3455999999999999999
Q ss_pred HHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceE
Q 007936 342 LEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADAL 421 (584)
Q Consensus 342 ldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~i 421 (584)
||||+++||||||||||||+|+|+++||.+||+||++||++|||||+||||||||++||+|||||++||||||+||+||+
T Consensus 233 ldeIi~~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAv 312 (477)
T COG0469 233 LDEIIEASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAV 312 (477)
T ss_pred HHHHHHhcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCCch
Q 007936 422 MLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGH 501 (584)
Q Consensus 422 mLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~sG~ 501 (584)
|||+|||.|+||+|||++|++||.++|+.+....... . .......+..++|+.+++++|+.+++++|+++|.||+
T Consensus 313 MLS~ETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~----~-~~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ 387 (477)
T COG0469 313 MLSGETAAGKYPVEAVATMARIAKEAEKELPDNQLLR----F-RVDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGR 387 (477)
T ss_pred eechhhhcCCCHHHHHHHHHHHHHHHhcccchhhhhh----h-ccccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCH
Confidence 9999999999999999999999999999764211111 1 1112234678999999999999999999999999999
Q ss_pred HHHHHhccCCCCcEEEEcCchhhhcccccccccEEEEec-CCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC------
Q 007936 502 MASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLS-FSDDMESNLNRTFSLLKARGMIKSGDLVIAVSDV------ 574 (584)
Q Consensus 502 tA~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~-~~~d~~~~i~~~~~~~k~~g~i~~GD~Vvvv~g~------ 574 (584)
||+++|||||.+||||+|++.+++|+|+|+|||+|++++ +..+.+++++.+++.+.+.|+++.||.||+++|.
T Consensus 388 ta~~isk~Rp~~pIia~t~~~~v~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gD~vvit~G~~~~~~G 467 (477)
T COG0469 388 TARLLSKYRPEAPIIALTPNERVARRLALVWGVYPLLVEEKPTSTDEMVEEAVEKLLESGLVKKGDLVVITAGVPMGTVG 467 (477)
T ss_pred HHHHHhcCCCCCcEEEECCCHHHHhhhceeecceeEEecCCCCcHHHHHHHHHHHHHhcCcccCCCEEEEecCcccccCC
Confidence 999999999999999999999999999999999999998 6889999999999999999999999999999982
Q ss_pred -CceEEEEEc
Q 007936 575 -LQSIQVMNV 583 (584)
Q Consensus 575 -~~sI~v~~v 583 (584)
+|+|+|++|
T Consensus 468 ~tn~ikv~~v 477 (477)
T COG0469 468 TTNTIKVLTV 477 (477)
T ss_pred CceeEEEEeC
Confidence 699999875
No 7
>PLN02765 pyruvate kinase
Probab=100.00 E-value=7.1e-128 Score=1048.19 Aligned_cols=465 Identities=28% Similarity=0.445 Sum_probs=426.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCCCC
Q 007936 105 RRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSGPP 184 (584)
Q Consensus 105 r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~~~ 184 (584)
|||||||||||+|+++|+|++|+++||||||||||||++|+|+++++++|+++++.|++++||+||+|||||+|.+.+ +
T Consensus 28 ~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~-~ 106 (526)
T PLN02765 28 ALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTKKLCAVMLDTVGPELQVINKTE-K 106 (526)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCceeeeecCC-C
Confidence 459999999999999999999999999999999999999999999999999999999999999999999999999975 5
Q ss_pred ceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCC--------eeEEEEEEEeCCeEEEEEEcCcee
Q 007936 185 SARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGG--------MVRFEVIEKIGPDVKCRCTDPGLL 256 (584)
Q Consensus 185 ~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG--------~i~l~V~~~~~~~i~c~v~~~G~l 256 (584)
++.|++|++++|+.+.. ..++++.|++||++|++++++||+|++||| ++.|+|+++.++.++|+|++||.|
T Consensus 107 ~i~l~~G~~~~l~~~~~-~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l~V~~~~~~~v~~~v~~gG~L 185 (526)
T PLN02765 107 PISLKAGNTVTLTPDQS-KEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDEVKGDDVVCTVKNSATL 185 (526)
T ss_pred cEecCCCCEEEEecccc-cCCCCCEEeechHHHHhhcCCCCEEEECCcccccccCceEEEEEEEEECCEEEEEEEeCcEE
Confidence 79999999999997632 234557899999999999999999999987 899999999999999999999999
Q ss_pred CC-CceeeeccCCcccCCccccCCCCCccCHhhh-HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCC-CceEEEee
Q 007936 257 LP-RANLTFWRDGSLVRERNAMLPTISPKDWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDS-DIAVIAKI 333 (584)
Q Consensus 257 ~s-~Kgvnf~~~~~~lp~~~~~lp~lt~kD~~dI-~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~-~i~IiAKI 333 (584)
++ +|||| +||+.+++|.||+||++|| .||+++++|||++|||++++||.++|+++.. .+. +++|||||
T Consensus 186 ~s~~kgvn-------lpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~--~g~~~~~IiaKI 256 (526)
T PLN02765 186 AGSLFTLH-------VSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSS--LGLSQTQIFAKI 256 (526)
T ss_pred CCCcccee-------CCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHh--cCCCCCcEEEEE
Confidence 99 48999 9999999999999999999 6999999999999999999999999999953 343 79999999
Q ss_pred cCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHH
Q 007936 334 ESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEA 413 (584)
Q Consensus 334 Et~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~na 413 (584)
|+++|++|||||++++|||||||||||+|+|+|+||.+||+||++|+++|||||+ |||||||++||+|||||++||+||
T Consensus 257 E~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNA 335 (526)
T PLN02765 257 ENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANA 335 (526)
T ss_pred CCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999996 999999999999999999999999
Q ss_pred HHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEE
Q 007936 414 VRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDAL 493 (584)
Q Consensus 414 v~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aI 493 (584)
|+||+||+|||+|||+|+||++||++|++||+++|+++.+...+... .. ....+....+++|.+|+++|++++|++|
T Consensus 336 V~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~-~~--~~~~~~~~~~aia~sav~~A~~l~a~aI 412 (526)
T PLN02765 336 VLDGADAILLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKT-VK--YVGEPMSHLESIASSAVRAAIKVKASVI 412 (526)
T ss_pred HHhCCCEEEecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhh-hc--ccccCCCHHHHHHHHHHHHHhhCCCCEE
Confidence 99999999999999999999999999999999999865432211110 00 0011224568999999999999999999
Q ss_pred EEccCCchHHHHHhccCCCCcEEEEc-Cc------------hhhhcccccccccEEEEecCCCC-------HHHHHHHHH
Q 007936 494 FVYTKTGHMASLLSRCRPDCPIFAFT-ST------------TSVRRRLNLRWGLIPFRLSFSDD-------MESNLNRTF 553 (584)
Q Consensus 494 vv~T~sG~tA~~lSr~RP~~PIiavT-~~------------~~~aR~l~l~~GV~P~~~~~~~d-------~~~~i~~~~ 553 (584)
+|||+||+||+++|||||.|||||+| ++ ++++|+|+|+|||+|++++...+ .+..++.++
T Consensus 413 vv~T~sG~tAr~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~~~~~~~~e~~~~~~~~~~~~a~ 492 (526)
T PLN02765 413 IVFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSATNESVLKVAL 492 (526)
T ss_pred EEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEEeccccccccccccHHHHHHHHH
Confidence 99999999999999999999999999 66 89999999999999999865444 678899999
Q ss_pred HHHHHcCCCCCCCEEEEEec--CCceEEEEEcC
Q 007936 554 SLLKARGMIKSGDLVIAVSD--VLQSIQVMNVP 584 (584)
Q Consensus 554 ~~~k~~g~i~~GD~Vvvv~g--~~~sI~v~~v~ 584 (584)
++++++|++++||.||++++ .+|+++|.+||
T Consensus 493 ~~~~~~g~~~~GD~vvv~~~~g~tn~i~v~~v~ 525 (526)
T PLN02765 493 DHGKAAGVIKSHDRVVVCQKVGDSSVVKIIELD 525 (526)
T ss_pred HHHHHcCCCCCCCEEEEEecCCCCceEEEEEcC
Confidence 99999999999999999865 58999999986
No 8
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=2.2e-126 Score=1056.03 Aligned_cols=464 Identities=34% Similarity=0.582 Sum_probs=435.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCC
Q 007936 103 STRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSG 182 (584)
Q Consensus 103 ~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~ 182 (584)
.+|||||||||||+|+++|+|++|+++|||+||||||||++|+|+++++++|++++++|++++||+||+|||||+|.+.+
T Consensus 6 ~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 85 (590)
T PRK06354 6 LMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLGKTVGILQDLQGPKIRLGRFED 85 (590)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCceeccccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEe--CCeEEEEEEcCceeCCCc
Q 007936 183 PPSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKI--GPDVKCRCTDPGLLLPRA 260 (584)
Q Consensus 183 ~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~--~~~i~c~v~~~G~l~s~K 260 (584)
+++.|++|++|+|+.++ ..++++.|++||++|++++++||.|++|||+|.|+|++++ ++.++|+|++||.|+++|
T Consensus 86 -~~i~l~~G~~~~l~~~~--~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~K 162 (590)
T PRK06354 86 -GPIELKTGDEFILTSRE--VLGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKK 162 (590)
T ss_pred -CcEEecCCCEEEEEecc--cCCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCC
Confidence 47999999999999873 2345678999999999999999999999999999999988 899999999999999999
Q ss_pred eeeeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHh
Q 007936 261 NLTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLK 340 (584)
Q Consensus 261 gvnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~ 340 (584)
||| +||..+++|.||+||++||+||+++++|||++|||++++||.++++++.. ..+.++.|||||||++|++
T Consensus 163 gvn-------~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~-~~~~~~~iiaKIEt~eav~ 234 (590)
T PRK06354 163 GVN-------FPGVSLSLPAITEKDREDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEE-HNGKHIPIIAKIEKQEAID 234 (590)
T ss_pred ccc-------ccCCccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHH-hcCCCceEEEEECCHHHHH
Confidence 999 99999999999999999999999999999999999999999999999942 2356799999999999999
Q ss_pred cHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccce
Q 007936 341 NLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADA 420 (584)
Q Consensus 341 NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~ 420 (584)
|+|||++++|||||||||||+|+|.++||.+||+|+++|+++|||||+||||||||++||+|||||++||+|||+||+||
T Consensus 235 nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~Da 314 (590)
T PRK06354 235 NIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDA 314 (590)
T ss_pred hHHHHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCCc
Q 007936 421 LMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTG 500 (584)
Q Consensus 421 imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~sG 500 (584)
+|||+|||+|+||++||++|++||+++|+++++...+.. ... ...+..+++|.+|+++|+++++++|++||+||
T Consensus 315 vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~-----~~~-~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG 388 (590)
T PRK06354 315 VMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSK-----RPE-FTTTITNAISQAVSHIALQLDAAAIVTLTKSG 388 (590)
T ss_pred EEecccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhh-----ccc-cCCCHHHHHHHHHHHHHhhcCCCEEEEECCCh
Confidence 999999999999999999999999999986543211111 110 02356789999999999999999999999999
Q ss_pred hHHHHHhccCCCCcEEEEcCchhhhcccccccccEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec-------
Q 007936 501 HMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSD------- 573 (584)
Q Consensus 501 ~tA~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~~~~d~~~~i~~~~~~~k~~g~i~~GD~Vvvv~g------- 573 (584)
+||+++|||||.|||||+|++++++|||+|+|||+|++++...+.+++++.+++++++.|++++||.||+++|
T Consensus 389 ~ta~~vsk~Rp~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~~~~~~g 468 (590)
T PRK06354 389 ATARNVSKYRPKTPILAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDAAINVAQESGLLKQGDLVVITAGTLVGESG 468 (590)
T ss_pred HHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCcCC
Confidence 9999999999999999999999999999999999999998888899999999999999999999999999987
Q ss_pred CCceEEEEEc
Q 007936 574 VLQSIQVMNV 583 (584)
Q Consensus 574 ~~~sI~v~~v 583 (584)
.+|++||++|
T Consensus 469 ~tn~~~v~~v 478 (590)
T PRK06354 469 STDLMKVHVV 478 (590)
T ss_pred CceeEEEEEe
Confidence 3699999987
No 9
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=4.2e-126 Score=1033.32 Aligned_cols=468 Identities=37% Similarity=0.601 Sum_probs=434.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCCC
Q 007936 104 TRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSGP 183 (584)
Q Consensus 104 ~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~~ 183 (584)
||||||||||||+|+++|+|++|+++|||+||||||||++|+|+++++++|++++++|++++||+||+|||||+|.+.++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~~~i~il~Dl~GpkiR~g~~~~~ 80 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGPVAIALDTKGPEIRTGLFKGG 80 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeecccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCC-eEEEEEEcCceeCCCcee
Q 007936 184 PSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGP-DVKCRCTDPGLLLPRANL 262 (584)
Q Consensus 184 ~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~-~i~c~v~~~G~l~s~Kgv 262 (584)
+++.|++|+.|+|+.+.....++++.|++||++|++.+++||.|++|||++.|+|++++++ .++|+|.+||.|+++|||
T Consensus 81 ~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~i~~~v~~~G~l~~~kgi 160 (480)
T cd00288 81 KDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKGV 160 (480)
T ss_pred CceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEcCCceEEEEEEeCeEEcCCCce
Confidence 4799999999999987321234567899999999999999999999999999999999998 999999999999999999
Q ss_pred eeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcH
Q 007936 263 TFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNL 342 (584)
Q Consensus 263 nf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~Nl 342 (584)
| +||..+++|.||+||++||+||+++|+|||++|||++++||+++|+++. ..+.++.+||||||++|++||
T Consensus 161 n-------~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~--~~~~~~~iiakIEt~~av~nl 231 (480)
T cd00288 161 N-------LPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLG--EKGKDIKIIAKIENQEGVNNF 231 (480)
T ss_pred E-------eeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHH--hcCCCceEEEEECCHHHHHhH
Confidence 9 9999999999999999999999999999999999999999999999995 456789999999999999999
Q ss_pred HHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEe
Q 007936 343 EEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALM 422 (584)
Q Consensus 343 deIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~im 422 (584)
|||++++|||||||||||+++|.++|+.+|++|+++|+++|||+|+||||||||++||+|||||++||+|||+||+||+|
T Consensus 232 deI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vm 311 (480)
T cd00288 232 DEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVM 311 (480)
T ss_pred HHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCCchH
Q 007936 423 LSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGHM 502 (584)
Q Consensus 423 Ls~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~sG~t 502 (584)
||+|||+|+||++||++|++||+++|+++.+..++.. .........+..++++.+|+++|+++++++||+||.||+|
T Consensus 312 LS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~---~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~T 388 (480)
T cd00288 312 LSGETAKGKYPVEAVKAMARICLEAEKALSHRVLFNE---MRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRT 388 (480)
T ss_pred EechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhh---hhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHH
Confidence 9999999999999999999999999986543211111 1000011124578999999999999999999999999999
Q ss_pred HHHHhccCCCCcEEEEcCchhhhcccccccccEEEEecCC-----CCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC---
Q 007936 503 ASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFS-----DDMESNLNRTFSLLKARGMIKSGDLVIAVSDV--- 574 (584)
Q Consensus 503 A~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~~~-----~d~~~~i~~~~~~~k~~g~i~~GD~Vvvv~g~--- 574 (584)
|+++|+|||.+||||+|++++++|+|+|+|||+|++++.. .+.+++++.+.++++++|++++||.||+++|+
T Consensus 389 A~~lS~~RP~~pIiavT~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~~~~ 468 (480)
T cd00288 389 ARLVSKYRPNAPIIAVTRNEQTARQLHLYRGVYPVLFEEPKPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQGWPVG 468 (480)
T ss_pred HHHHHhhCCCCCEEEEcCCHHHhhheeeccCcEEEEecccccccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCC
Confidence 9999999999999999999999999999999999998655 78999999999999999999999999999884
Q ss_pred ---CceEEEEEc
Q 007936 575 ---LQSIQVMNV 583 (584)
Q Consensus 575 ---~~sI~v~~v 583 (584)
+|+|||++|
T Consensus 469 ~~~tn~i~v~~~ 480 (480)
T cd00288 469 SGSTNTMRILTV 480 (480)
T ss_pred CCCCeEEEEEEC
Confidence 799999875
No 10
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=5.1e-125 Score=1021.47 Aligned_cols=455 Identities=38% Similarity=0.604 Sum_probs=428.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCC
Q 007936 103 STRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSG 182 (584)
Q Consensus 103 ~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~ 182 (584)
++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|+|++|++||+|||||+|.+.+
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 81 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKE 81 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCcee
Q 007936 183 PPSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRANL 262 (584)
Q Consensus 183 ~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~Kgv 262 (584)
+++.|++|++|+|+.+.. ..++++.|++||++|++++++||.|++|||++.|+|++++++.++|+|+++|.|+++|||
T Consensus 82 -~~i~l~~G~~v~l~~~~~-~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgv 159 (465)
T PRK05826 82 -GKITLKTGDKFTLDTDQK-EEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGI 159 (465)
T ss_pred -CcEEecCCCEEEEEeccc-cCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCcee
Confidence 579999999999998732 234567999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCC-CceEEEeecCHHHHhc
Q 007936 263 TFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDS-DIAVIAKIESIDSLKN 341 (584)
Q Consensus 263 nf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~-~i~IiAKIEt~~av~N 341 (584)
| +||+.+++|.||++|.+||+|++++|+|||++|||++++|++++++++. ..|. ++.|||||||++|++|
T Consensus 160 n-------lp~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~--~~~~~~~~iiakIEt~eav~n 230 (465)
T PRK05826 160 N-------IPGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLR--EAGCPHAKIIAKIERAEAVDN 230 (465)
T ss_pred e-------ccCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH--HcCCcCceEEEEEcCHHHHHh
Confidence 9 9999999999999999999999999999999999999999999999994 5566 7999999999999999
Q ss_pred HHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceE
Q 007936 342 LEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADAL 421 (584)
Q Consensus 342 ldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~i 421 (584)
||||++++|||||||||||+++|.++|+.+|++|+++|+++|||+|+||||||||++||+|||||++||+|||+||+||+
T Consensus 231 ldeI~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~v 310 (465)
T PRK05826 231 IDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAV 310 (465)
T ss_pred HHHHHHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC-CcEEEEccCCc
Q 007936 422 MLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE-VDALFVYTKTG 500 (584)
Q Consensus 422 mLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~-a~aIvv~T~sG 500 (584)
|||+|||+|+||++||++|++||+++|+++.+..++.. ... ...+..+++|.+|+++|++++ |++|||||+||
T Consensus 311 mLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~-----~~~-~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG 384 (465)
T PRK05826 311 MLSGETAAGKYPVEAVEAMARICKGAEKEFSINLSKHR-----LDR-QFDRIDEAIAMSAMYAANHLKGVKAIVALTESG 384 (465)
T ss_pred EeccccccCcCHHHHHHHHHHHHHHHHhccchhhhhhh-----ccc-cccchHHHHHHHHHHHHHhcCCCCEEEEECCCc
Confidence 99999999999999999999999999986543211111 101 113567999999999999999 99999999999
Q ss_pred hHHHHHhccCCCCcEEEEcCchhhhcccccccccEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC
Q 007936 501 HMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSDV 574 (584)
Q Consensus 501 ~tA~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~~~~d~~~~i~~~~~~~k~~g~i~~GD~Vvvv~g~ 574 (584)
+||+++|||||.|||||+|++++++|+|+|+|||+|++++...+.+..+..++++++++|++++||.||+++|+
T Consensus 385 ~ta~~isk~RP~~pI~~~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvvv~g~ 458 (465)
T PRK05826 385 RTARLISRFRPGAPIFAVTRDEKTQRRLALYRGVYPVLFDSAADTDDAAEEALRLLLEKGLVESGDLVVVTSGD 458 (465)
T ss_pred HHHHHHHhhCCCCCEEEEcCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999996
No 11
>PLN02623 pyruvate kinase
Probab=100.00 E-value=1.3e-122 Score=1013.80 Aligned_cols=463 Identities=49% Similarity=0.758 Sum_probs=433.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhC-CceEEEeecCCCeEEEeec
Q 007936 102 RSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKG-FAVAIMMDTEGSEIHMGDL 180 (584)
Q Consensus 102 ~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~-~~i~I~lDl~GpkIR~G~~ 180 (584)
+.+|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++.+ ++++||+||+|||||+|.+
T Consensus 107 ~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~ 186 (581)
T PLN02623 107 SVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDL 186 (581)
T ss_pred CCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccC
Confidence 357899999999999999999999999999999999999999999999999999999974 9999999999999999999
Q ss_pred CCCCceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCc
Q 007936 181 SGPPSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRA 260 (584)
Q Consensus 181 ~~~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~K 260 (584)
.+ ++.|++|+.|+|+.+. ..++++.+++||++|++++++||.|++|||+|.|+|++++++.++|+|++||.|++||
T Consensus 187 ~~--~i~l~~G~~v~lt~~~--~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~V~~gG~L~s~K 262 (581)
T PLN02623 187 PQ--PIMLEEGQEFTFTIKR--GVSTEDCVSVNYDDFVNDVEVGDMLLVDGGMMSLAVKSKTSDSVKCEVVDGGELKSRR 262 (581)
T ss_pred CC--CEEecCCCEEEEecCc--cCCCCCEEeechHHHHhhCCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeceEecCCC
Confidence 75 7999999999999873 2346678999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHh
Q 007936 261 NLTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLK 340 (584)
Q Consensus 261 gvnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~ 340 (584)
||| +||+.+++|.||+||++||+|++++|+|||++|||++++||++++++++ ..+.++.||+||||++|++
T Consensus 263 gvN-------lpg~~~~lp~lTekD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~l~--~~~~~~~iiakIEt~eaVe 333 (581)
T PLN02623 263 HLN-------VRGKSATLPSITEKDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDYLK--SCNADIHVIVKIESADSIP 333 (581)
T ss_pred CCC-------CCCCcCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHH--HcCCcceEEEEECCHHHHH
Confidence 999 9999999999999999999999999999999999999999999999994 4577899999999999999
Q ss_pred cHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccce
Q 007936 341 NLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADA 420 (584)
Q Consensus 341 NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~ 420 (584)
|||||++.+|||||||||||+++|+++|+.+|++|+++|+++|||||+||||||||+.+|.|||||++|++|++.+|+|+
T Consensus 334 NldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~ 413 (581)
T PLN02623 334 NLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADA 413 (581)
T ss_pred hHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCCc
Q 007936 421 LMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTG 500 (584)
Q Consensus 421 imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~sG 500 (584)
+|||+||+.|+||+|||++|++||+++|+++.+...+..+ ... ...+..+++|.+|+++|+.++++ ||+||+||
T Consensus 414 vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~--~~~---~~~~~~~~ia~sA~~~A~~l~a~-Ivv~T~sG 487 (581)
T PLN02623 414 VMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNL--GQA---FKNHMSEMFAFHATMMANTLGTS-IIVFTRTG 487 (581)
T ss_pred EEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhh--ccc---cCCChHHHHHHHHHHHHHhcCCc-EEEECCCc
Confidence 9999999999999999999999999999865332111000 111 12346789999999999999999 99999999
Q ss_pred hHHHHHhccCCCCcEEEEcCchhhhcccccccccEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec-------
Q 007936 501 HMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSD------- 573 (584)
Q Consensus 501 ~tA~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~~~~d~~~~i~~~~~~~k~~g~i~~GD~Vvvv~g------- 573 (584)
+||+++|||||.|||||+|++++++|+|+|+|||+|++.++..+.|++++.++++++++|++++||.||+++|
T Consensus 488 ~tA~~lSr~RP~~pI~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~vviv~g~~~p~~~ 567 (581)
T PLN02623 488 FMAILLSHYRPSGTIFAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMVKEGEEVALVQSGRQPIWR 567 (581)
T ss_pred HHHHHHHhhCCCCCEEEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeccCCCCCC
Confidence 9999999999999999999999999999999999999999888999999999999999999999999999975
Q ss_pred --CCceEEEEEc
Q 007936 574 --VLQSIQVMNV 583 (584)
Q Consensus 574 --~~~sI~v~~v 583 (584)
.+|+|+|++|
T Consensus 568 ~g~tn~i~V~~v 579 (581)
T PLN02623 568 SESTHHIQVRKV 579 (581)
T ss_pred CCCCeEEEEEEe
Confidence 3699999886
No 12
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=1.8e-118 Score=965.38 Aligned_cols=440 Identities=33% Similarity=0.560 Sum_probs=406.4
Q ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCCCCceEeeCCCEEEEeecc-cCCCCCCCE
Q 007936 131 MNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSGPPSARAEDGEIWTFTVRA-FDSPRPERT 209 (584)
Q Consensus 131 m~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~~~~i~l~~G~~v~~t~~~-~~~~~~~~~ 209 (584)
|||||||||||++|+|+++++++|++++++|++++||+||+|||||+|.+.+ ++++|++|++|+|+.++ +...++++.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~~~i~il~Dl~GPkiR~g~~~~-~~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGLFVG-GEAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeccccCC-CcEEecCCCEEEEEeccccccCCCCCE
Confidence 8999999999999999999999999999999999999999999999999976 46999999999999873 233456678
Q ss_pred EEecccchhcccCCCCEEEEeCCeeEEEEEEEeC-CeEEEEEEcCceeCCCceeeeccCCcccCCccccCCCCCccCHhh
Q 007936 210 ITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIG-PDVKCRCTDPGLLLPRANLTFWRDGSLVRERNAMLPTISPKDWLD 288 (584)
Q Consensus 210 i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~-~~i~c~v~~~G~l~s~Kgvnf~~~~~~lp~~~~~lp~lt~kD~~d 288 (584)
|++||++|++.+++||.|++|||++.|+|.++.+ +.++|+|++||.|++||||| +||..+++|++|++|.+|
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~v~~~v~~gG~l~~~kgvn-------lp~~~~~l~~ltekD~~d 152 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVTNAHTISDRRGVN-------LPGCDVDLPAVSAKDCAD 152 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEEcCCceEEEEEecCcEecCCCccc-------cCCCccCCCCCChhhHHH
Confidence 9999999999999999999999999999999986 69999999999999999999 999999999999999999
Q ss_pred hHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCCh
Q 007936 289 IDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQV 368 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V 368 (584)
|+|++++|+|||++|||++++|++++|+++ +..+.++.|||||||++|++|||||++.+|||||||||||+|+|.++|
T Consensus 153 I~~ald~gvd~I~~SfVrsaeDv~~vr~~l--~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~v 230 (454)
T PTZ00300 153 LQFGVEQGVDMIFASFIRSAEQVGEVRKAL--GAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKV 230 (454)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHH--HhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHH
Confidence 999999999999999999999999999999 445668999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHh
Q 007936 369 PSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIE 448 (584)
Q Consensus 369 ~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE 448 (584)
|.+||+|+++|+++|||||+||||||||++||+|||||++||+|||+||+||+|||+|||+|+||++||++|++||+++|
T Consensus 231 p~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE 310 (454)
T PTZ00300 231 VVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQ 310 (454)
T ss_pred HHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCCchHHHHHhccCCCCcEEEEcCchhhhccc
Q 007936 449 KWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRL 528 (584)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~sG~tA~~lSr~RP~~PIiavT~~~~~aR~l 528 (584)
+++++..++.... .....+.+..+++|.+|+++|++++|++|++||+||+||+++|||||.|||||+|++++++|+|
T Consensus 311 ~~~~~~~~~~~~~---~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~t~~~~~ar~l 387 (454)
T PTZ00300 311 SAVNEYVFFNSIK---KLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQL 387 (454)
T ss_pred hhhchhhhhhhhh---ccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHh
Confidence 8643221111110 0011122456899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccEEEEecC-----CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec------CCceEEEEEc
Q 007936 529 NLRWGLIPFRLSF-----SDDMESNLNRTFSLLKARGMIKSGDLVIAVSD------VLQSIQVMNV 583 (584)
Q Consensus 529 ~l~~GV~P~~~~~-----~~d~~~~i~~~~~~~k~~g~i~~GD~Vvvv~g------~~~sI~v~~v 583 (584)
+|+|||+|++++. ..+.++++..++++++++|++++||.||+++| .+|++||++|
T Consensus 388 ~l~~GV~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~~~~~g~tn~i~v~~~ 453 (454)
T PTZ00300 388 NITQGVESVFFDAERLGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYANQTRIILV 453 (454)
T ss_pred hcccCcEEEEeccccccccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEe
Confidence 9999999998864 45788999999999999999999999999887 3799999987
No 13
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=3.1e-117 Score=966.11 Aligned_cols=456 Identities=40% Similarity=0.675 Sum_probs=424.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCCCC
Q 007936 105 RRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSGPP 184 (584)
Q Consensus 105 r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~~~ 184 (584)
||||||||+||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|++++||+||+|||||+|.+.+ +
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~~~~~i~~Dl~GpkiR~g~~~~-~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGRPVAILLDTKGPEIRTGEIKG-G 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeccccCC-C
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999975 4
Q ss_pred ceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCceeee
Q 007936 185 SARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRANLTF 264 (584)
Q Consensus 185 ~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~Kgvnf 264 (584)
++.|++|+.|+|+.+.....++++.|++||++|++++++||.|++|||++.|+|++++++.++|+|++||.|+++||||
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~~~~~~~~v~~~g~l~~~kgvn- 158 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVN- 158 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCceee-
Confidence 7999999999999874222345678999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCC-CCceEEEeecCHHHHhcHH
Q 007936 265 WRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRD-SDIAVIAKIESIDSLKNLE 343 (584)
Q Consensus 265 ~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~-~~i~IiAKIEt~~av~Nld 343 (584)
+||..+++|.||+||.+||+|+++.|+|+|++|||++++||+.+++++. ..+ .++.|||||||++|++|++
T Consensus 159 ------~p~~~~~~~~ltekD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~--~~~~~~~~Iia~IEt~~av~nl~ 230 (473)
T TIGR01064 159 ------LPGADVDLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVLG--EKGAKDVKIIAKIENQEGVDNID 230 (473)
T ss_pred ------cCCCccCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH--hcCCCCceEEEEECCHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999994 334 3689999999999999999
Q ss_pred HHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 344 EIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 344 eIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
||++++||+|+|||||++++|.++++.+|++|+.+|+++|||+|+||||||||+.||+|||||++|++|++.+|+|++||
T Consensus 231 eI~~~~dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~l 310 (473)
T TIGR01064 231 EIAEASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVML 310 (473)
T ss_pred HHHhhCCcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCCchHH
Q 007936 424 SGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGHMA 503 (584)
Q Consensus 424 s~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~sG~tA 503 (584)
|+||+.|+||+|||++|++||+++|+++.+...+... ........+..+++|.+|+++|+.++|++||+||+||+||
T Consensus 311 s~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~---~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA 387 (473)
T TIGR01064 311 SGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDR---KNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTA 387 (473)
T ss_pred cchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhh---hcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHH
Confidence 9999999999999999999999999864322111111 0001111356799999999999999999999999999999
Q ss_pred HHHhccCCCCcEEEEcCchhhhcccccccccEEEEecC-CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Q 007936 504 SLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSF-SDDMESNLNRTFSLLKARGMIKSGDLVIAVSD 573 (584)
Q Consensus 504 ~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~~-~~d~~~~i~~~~~~~k~~g~i~~GD~Vvvv~g 573 (584)
+++|||||.|||||+|++++++|+|+|+|||+|++++. ..+.++.++.++++++++|++++||.||+++|
T Consensus 388 ~~vSr~rp~~PIiAvT~~~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~~~gl~~~GD~VVvv~g 458 (473)
T TIGR01064 388 RLLSKYRPNAPIIAVTPNERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLKEKGILKKGDLVVVIQG 458 (473)
T ss_pred HHHHhhCCCCCEEEEcCCHHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Confidence 99999999999999999999999999999999999876 56889999999999999999999999999988
No 14
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-114 Score=926.97 Aligned_cols=468 Identities=37% Similarity=0.599 Sum_probs=439.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCc-eEEEeecCCCeEEEeecC
Q 007936 103 STRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFA-VAIMMDTEGSEIHMGDLS 181 (584)
Q Consensus 103 ~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~-i~I~lDl~GpkIR~G~~~ 181 (584)
..|+|||+||+||++++.|+|++|+++|||++|+|||||++++|+++++++|++.+.++.. ++||+|++||+||+|.+.
T Consensus 19 ~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~~ai~LDtkGpEirtg~~~ 98 (501)
T KOG2323|consen 19 KRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALPCAIMLDTKGPEIRTGDLK 98 (501)
T ss_pred cccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhcCCcchhhhhccCCCeEeecccC
Confidence 4579999999999999999999999999999999999999999999999999999988855 999999999999999998
Q ss_pred CCCceEeeCCCEEEEeecc-cCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCc
Q 007936 182 GPPSARAEDGEIWTFTVRA-FDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRA 260 (584)
Q Consensus 182 ~~~~i~l~~G~~v~~t~~~-~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~K 260 (584)
++.+++|++|++++||++. +... .++++++||+++.++|++||.|++|||.+.|.|.++..+.+.|+|+++|.+.++|
T Consensus 99 ~~~~i~L~~G~~i~~t~d~~~~~~-~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~V~~~~~~~~~c~v~n~g~l~s~k 177 (501)
T KOG2323|consen 99 NGKPIKLKEGQEITITTDYSYEAK-LSETISVDYKKLAKDVKPGDIIYVDDGLISLIVKSVSKDEVTCRVENGGMLGSRK 177 (501)
T ss_pred CCCceeecCCCEEEEEcChhhccc-cceEEEeehHHhhhccccCCEEEECCceeeeEEEEeecCceEEEEecCccccccc
Confidence 8779999999999999984 5555 5689999999999999999999999999999999998889999999999999999
Q ss_pred e-eeeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHH
Q 007936 261 N-LTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSL 339 (584)
Q Consensus 261 g-vnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av 339 (584)
| +| +||+..+||.|||||++|++||+++++|+|++||||.++|+.++|++| ++.+++++||+|||+++|+
T Consensus 178 ~~vn-------lpg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~a~dv~~iR~~L--g~~g~~ikiisKIEn~~g~ 248 (501)
T KOG2323|consen 178 GNVN-------LPGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRKASDVREVRKVL--GESGKNIKLISKIENQEGV 248 (501)
T ss_pred Cccc-------CCCccccCCccChhhHHHHhcCCCCCCCEEEeeeeeehHHHHHHHHHh--CccCCcceEEEEechhhhh
Confidence 9 99 999999999999999999999999999999999999999999999999 5567899999999999999
Q ss_pred hcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccc
Q 007936 340 KNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRAD 419 (584)
Q Consensus 340 ~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D 419 (584)
.|+|||+.++||+||+|||||+|+|.|+++.+||.||.+|+.+|||||+||||||||+.+|+|||||++||+|||+||+|
T Consensus 249 ~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAVLdg~D 328 (501)
T KOG2323|consen 249 SNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAVLDGAD 328 (501)
T ss_pred ccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCccchHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCC
Q 007936 420 ALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKT 499 (584)
Q Consensus 420 ~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~s 499 (584)
|+|||||||.|+||++||++|+.||.++|..+++...+..+. ...+.+.+..++++.+|+.+|....+.+|+|+|++
T Consensus 329 ~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~---~~v~~~~~~ie~~a~~Av~~a~~~~a~aIvv~T~s 405 (501)
T KOG2323|consen 329 CVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELG---TAVSFPMSTIESLAASAVRAATKCLASAIVVLTKS 405 (501)
T ss_pred eEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHH---hhcCCCCchhHHHHHHHHHHHHhhcceEEEEEecC
Confidence 999999999999999999999999999999776654444332 11234556789999999999999999999999999
Q ss_pred chHHHHHhccCCCCcEEEEcCchhhhcccccccccEEEEe------cCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Q 007936 500 GHMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRL------SFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSD 573 (584)
Q Consensus 500 G~tA~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~------~~~~d~~~~i~~~~~~~k~~g~i~~GD~Vvvv~g 573 (584)
|++|+++|+|||.||||++|.....|||++|+|||+|+++ .|.++.|+.+++++++++++|+++.||.+|++.+
T Consensus 406 g~~a~lvskyrP~~PIi~vt~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k~~g~~k~gd~~vvv~~ 485 (501)
T KOG2323|consen 406 GYTAILVSKYRPSVPIISVTRPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGKKKGILKKGDVVVVVNK 485 (501)
T ss_pred cccHHHHhccCCCCCEEEEeccHHHHHHHHhhccceeeeecccchhhhhhhHHHHHHHHHHHHHhcchhhcCCEEEEEec
Confidence 9999999999999999999999999999999999999995 4778999999999999999999999997777665
Q ss_pred ------CCceEEEEEc
Q 007936 574 ------VLQSIQVMNV 583 (584)
Q Consensus 574 ------~~~sI~v~~v 583 (584)
++|+|+|.++
T Consensus 486 ~~~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 486 GKGGASVTNTIRVEKV 501 (501)
T ss_pred ccCCccceeeEEEeeC
Confidence 3699998764
No 15
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=7.1e-105 Score=840.51 Aligned_cols=342 Identities=43% Similarity=0.709 Sum_probs=308.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCCC
Q 007936 104 TRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSGP 183 (584)
Q Consensus 104 ~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~~ 183 (584)
||||||||||||+|+++|+|++|+++|||+||||||||++|+|+++++++|+++++++.+++||+||+|||||||.+.++
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~~~i~IllDl~GPkIRtg~l~~g 80 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELGKPIAILLDLKGPKIRTGRLKDG 80 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTTTS-EEEEEE-TS-EBB-BBTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccCCceEEEeccCCCcceeeeeccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred -CceEeeCCCEEEEeecc-cCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCe-EEEEEEcCceeCCCc
Q 007936 184 -PSARAEDGEIWTFTVRA-FDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPD-VKCRCTDPGLLLPRA 260 (584)
Q Consensus 184 -~~i~l~~G~~v~~t~~~-~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~-i~c~v~~~G~l~s~K 260 (584)
.+++|++|++|+|+.++ +.+.++++.|++||++|++++++||+|++|||++.|+|+++.++. ++|+|.++|.|+++|
T Consensus 81 ~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~~i~~~v~~~G~L~~~K 160 (348)
T PF00224_consen 81 KKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVDGDSSIKCEVLNGGKLKSRK 160 (348)
T ss_dssp SSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEESTEEEEEEESS-EEEESSE
T ss_pred cccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEcCCcceeEEeCCCCCccCCc
Confidence 37999999999999884 444556789999999999999999999999999999999999999 999999999999999
Q ss_pred eeeeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHh
Q 007936 261 NLTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLK 340 (584)
Q Consensus 261 gvnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~ 340 (584)
||| +|+..+++|.||++|++||+||+++|+|||++|||++++||.++|++| .+.+.+++|||||||++|++
T Consensus 161 gVn-------lp~~~~~lp~LtekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l--~~~~~~~~iiaKIE~~~~v~ 231 (348)
T PF00224_consen 161 GVN-------LPGVDLDLPALTEKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKIL--GEKGKDIKIIAKIETKEAVE 231 (348)
T ss_dssp BEE-------ETTS---S-SS-HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHHH--TCTTTTSEEEEEE-SHHHHH
T ss_pred cce-------ecccccccccCCHHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHHh--hhcCcccceeeccccHHHHh
Confidence 999 999999999999999999999999999999999999999999999999 44557899999999999999
Q ss_pred cHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccce
Q 007936 341 NLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADA 420 (584)
Q Consensus 341 NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~ 420 (584)
||+||+++||||||||||||+|+|+|+||.+||+|+++|+++|||||+||||||||+++|.|||||++||+|||+||+||
T Consensus 232 nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~ 311 (348)
T PF00224_consen 232 NLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADA 311 (348)
T ss_dssp THHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SE
T ss_pred hHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhh
Q 007936 421 LMLSGESAMGQFPDKALTVLRSVSLRIEKWWREE 454 (584)
Q Consensus 421 imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 454 (584)
+|||+|||+|+||++||++|++||+++|+.+.+.
T Consensus 312 vmLs~ETa~G~~p~~~v~~~~~i~~~~E~~~~~~ 345 (348)
T PF00224_consen 312 VMLSGETAIGKYPVEAVKTMARIIREAEKYLDYR 345 (348)
T ss_dssp EEESHHHHTSSSHHHHHHHHHHHHHHHHHTS-HH
T ss_pred EEecCCcCCCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999977653
No 16
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=1.7e-103 Score=825.69 Aligned_cols=332 Identities=34% Similarity=0.589 Sum_probs=317.4
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCCCCc
Q 007936 106 RTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSGPPS 185 (584)
Q Consensus 106 ~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~~~~ 185 (584)
++||||||||+|+++|+|++|+++|||+||||||||++|+|.++++++|++++ +++||+||+|||||+|.+.+ ++
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~----~vaIl~Dl~GPkIR~G~~~~-~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD----SIKILGDVQGPKIRLGEIKG-EQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh----hcceeecCCCCcceecccCC-Cc
Confidence 68999999999999999999999999999999999999999999999999875 48999999999999999976 47
Q ss_pred eEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCceeeec
Q 007936 186 ARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRANLTFW 265 (584)
Q Consensus 186 i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~Kgvnf~ 265 (584)
+.|++|+.|+|+.++. .++++.+++||++|++.+++||.||+|||++.|+|+++.++.+.|+|++||.|+++||||
T Consensus 77 i~l~~G~~v~lt~~~~--~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~v~~~v~~gG~L~s~Kgvn-- 152 (352)
T PRK06739 77 ITLQAGDSFILHTQPV--TGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVSTDKIETKVKTGGNISSHKGVN-- 152 (352)
T ss_pred EEecCCCEEEEecCcc--CCCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEeeCcEEcCCCCee--
Confidence 9999999999998743 335578999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEI 345 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeI 345 (584)
+||..+++|.||+||++||+||+++|+|||++|||++++||.++|+++...+ +.+++|||||||++|++||+||
T Consensus 153 -----~pg~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g-~~~~~IiaKIE~~~av~nl~eI 226 (352)
T PRK06739 153 -----LPGAIVRLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYK-ETSPNLIAKIETMEAIENFQDI 226 (352)
T ss_pred -----cccccCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcC-CCCCcEEEEECCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999995322 3478999999999999999999
Q ss_pred HHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC
Q 007936 346 ILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG 425 (584)
Q Consensus 346 l~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ 425 (584)
++++|||||||||||+|+|+|+||.+||+||+.|+++|||||+||||||||++||+|||||++||+|||+||+||+|||+
T Consensus 227 ~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ 306 (352)
T PRK06739 227 CKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSA 306 (352)
T ss_pred HHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 426 ESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 426 ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
|||+|+||++||++|++||+++|+|+.
T Consensus 307 ETA~G~yPveaV~~m~~I~~~aE~~~~ 333 (352)
T PRK06739 307 ESASGEHPIESVSTLRLVSEFAEHVKK 333 (352)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999998753
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=4e-93 Score=780.84 Aligned_cols=353 Identities=29% Similarity=0.427 Sum_probs=330.4
Q ss_pred CCCcccccccchHhhhcCCCCCCCCceEEEecC-CCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Q 007936 82 DSSSIEVDSVTEAELKENGFRSTRRTKLVCTIG-PATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEK 160 (584)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiG-Pa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~ 160 (584)
..+..-++.++|+.|+++ ..+|+||||||+| |++.+++.|++|+++||||||||||||++++|+++|+++|++++++
T Consensus 118 ~~g~~lL~~~~~~l~G~~--~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~ 195 (608)
T PRK14725 118 EEGDELLDEHAEALLGPP--PSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEEL 195 (608)
T ss_pred hhHHHHHHHHHHHhcCCC--CCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHc
Confidence 445566899999999987 5578999999999 6999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeecCCCeEEEeecCCCC--------------------------------------------------------
Q 007936 161 GFAVAIMMDTEGSEIHMGDLSGPP-------------------------------------------------------- 184 (584)
Q Consensus 161 ~~~i~I~lDl~GpkIR~G~~~~~~-------------------------------------------------------- 184 (584)
|++|+|++||+|||||||.+.++.
T Consensus 196 gr~~~I~mDL~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i 275 (608)
T PRK14725 196 GRRCRIAMDLAGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGDEL 275 (608)
T ss_pred CCCEEEEEeCCCCcceEEecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCcee
Confidence 999999999999999999996532
Q ss_pred --------------------------------------------------------ceEeeCCCEEEEeecccCCC---C
Q 007936 185 --------------------------------------------------------SARAEDGEIWTFTVRAFDSP---R 205 (584)
Q Consensus 185 --------------------------------------------------------~i~l~~G~~v~~t~~~~~~~---~ 205 (584)
.+.|++|+.++|+.+...+. +
T Consensus 276 ~~~DaRg~~R~l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~ 355 (608)
T PRK14725 276 RFTDARGKKRKLTVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQG 355 (608)
T ss_pred eeeeccccceeeeEEeecCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccccC
Confidence 58999999999998742221 2
Q ss_pred CCC--EEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEc----CceeCCCceeeeccCCcccCCccccCC
Q 007936 206 PER--TITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTD----PGLLLPRANLTFWRDGSLVRERNAMLP 279 (584)
Q Consensus 206 ~~~--~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~----~G~l~s~Kgvnf~~~~~~lp~~~~~lp 279 (584)
+.. .|+|+|+++++++++||.|++|||+|.|+|+++.++.+.|+|++ ||.|+++|||| +||..+++|
T Consensus 356 ~~~~~~i~~t~p~l~~~v~~G~~VlidDG~I~l~V~~~~~~~v~~~V~~a~~~gg~L~s~KGiN-------lP~~~l~lp 428 (608)
T PRK14725 356 DAPPARISCTLPEAFRAARVGERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGIN-------LPDSHLPLP 428 (608)
T ss_pred CCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEEecCCCCEecCCCcee-------cCCCCCCCC
Confidence 234 89999999999999999999999999999999999999999999 99999999999 999999999
Q ss_pred CCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhC-----CEEEE
Q 007936 280 TISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILAS-----DGAMV 354 (584)
Q Consensus 280 ~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~s-----DGImI 354 (584)
.||+||++||+|++++ +|||++|||++++||+++|++|...+ +.++.|||||||++|++||+||+.++ |||||
T Consensus 429 ~LTekD~~dl~f~~~~-vD~ValSFVrs~~DV~~lr~~L~~~g-~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMI 506 (608)
T PRK14725 429 ALTDKDLEDLAFVAKH-ADIVALSFVRSPEDVRLLLDALEKLG-ADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMI 506 (608)
T ss_pred CCCHHHHHHHHHHHHh-CCEEEECCCCCHHHHHHHHHHHHHcC-CCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEE
Confidence 9999999999999999 99999999999999999999996432 34699999999999999999999997 99999
Q ss_pred eCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChH
Q 007936 355 ARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPD 434 (584)
Q Consensus 355 aRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPv 434 (584)
||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||+||+ |+||+||| +|+||+
T Consensus 507 ARGDLgvEi~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPv 580 (608)
T PRK14725 507 ARGDLAVEVGFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIV 580 (608)
T ss_pred ECCccccccCHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999 99999999 999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 007936 435 KALTVLRSVSLRIEKWW 451 (584)
Q Consensus 435 eaV~~m~~I~~~aE~~~ 451 (584)
|||++|++||+++|++.
T Consensus 581 eAV~~l~~I~~r~e~~~ 597 (608)
T PRK14725 581 EAVRVLDDILRRMEEHQ 597 (608)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999754
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=5.7e-91 Score=758.09 Aligned_cols=353 Identities=27% Similarity=0.403 Sum_probs=329.3
Q ss_pred CCCcccccccchHhhhcCCCCCCCCceEEEecC-CCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Q 007936 82 DSSSIEVDSVTEAELKENGFRSTRRTKLVCTIG-PATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEK 160 (584)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiG-Pa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~ 160 (584)
..+..-++.+++..|++. +.+|+|||||||| |+++++|+|++|+++||||||||||||++++|+++|+++|++++++
T Consensus 112 ~~g~~~l~~~~~~l~g~~--~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~ 189 (493)
T PRK08187 112 FAGERLLAAHTEELFGPR--PAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERAT 189 (493)
T ss_pred hhHHHHHHHHHHHHcCCC--cCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 345566899999999987 5578999999995 9999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeecCCCeEEEeecCCC-CceEeeCCCEEEEeecccCCC--CCCCEEEecccchhcccCCCCEEEEeCCeeEEE
Q 007936 161 GFAVAIMMDTEGSEIHMGDLSGP-PSARAEDGEIWTFTVRAFDSP--RPERTITVNYDGFAEDVKVGDELLVDGGMVRFE 237 (584)
Q Consensus 161 ~~~i~I~lDl~GpkIR~G~~~~~-~~i~l~~G~~v~~t~~~~~~~--~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~ 237 (584)
|++|+||+||+|||||||.+.++ .++.|++|+.|+|+.+...+. ++...|+++|++|++++++||.|++|||+|.|+
T Consensus 190 g~~i~Il~DL~GPKIRtG~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l~ 269 (493)
T PRK08187 190 GRRCKILMDLAGPKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLGAR 269 (493)
T ss_pred CCCeEEEEeCCCCceeecccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEE
Confidence 99999999999999999999753 358999999999988742221 234689999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEE----cCceeCCCceeeeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHH
Q 007936 238 VIEKIGPDVKCRCT----DPGLLLPRANLTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINH 313 (584)
Q Consensus 238 V~~~~~~~i~c~v~----~~G~l~s~Kgvnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~ 313 (584)
|+++.++.+.|+|+ +||.|+++|||| +||..+.+|.+|++|.+||+|+++ ++|+|++|||++++||..
T Consensus 270 V~~v~~~~v~~~V~~~~~~gg~L~~~KgiN-------lP~~~vrin~LtekD~~DL~f~~~-~vD~I~lSfV~saeDV~~ 341 (493)
T PRK08187 270 VERVGPGGALLEVTHARPKGLKLKPEKGLN-------FPDTALDLPALTEKDRADLDFVAR-HADLVGYSFVQSPGDVEA 341 (493)
T ss_pred EEEEeCCEEEEEEEEecCCCeEecCCCccc-------ccCceecCCCCCHhHHHHHHHHHh-cCCEEEECCCCCHHHHHH
Confidence 99999999999999 999999999999 999999999999999999999998 699999999999999999
Q ss_pred HHHHHHhhcC--CCCceEEEeecCHHHHhcHHHHHHhCC-----EEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCe
Q 007936 314 LKSYIAARSR--DSDIAVIAKIESIDSLKNLEEIILASD-----GAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPV 386 (584)
Q Consensus 314 lr~~l~~~~~--~~~i~IiAKIEt~~av~NldeIl~~sD-----GImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPv 386 (584)
++++|...+. ..++.||+||||++|++|++||+.++| ||||||||||+|+|++++|.+|++|+.+|+++||||
T Consensus 342 l~~~L~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpv 421 (493)
T PRK08187 342 LQAALAARRPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPV 421 (493)
T ss_pred HHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCe
Confidence 9999953221 247899999999999999999999888 999999999999999999999999999999999999
Q ss_pred EEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhh
Q 007936 387 IVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKW 450 (584)
Q Consensus 387 ivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~ 450 (584)
|+||||||||+++|.|||||++||||+ ||+||+||| +|+||++||++|++|+.++|++
T Consensus 422 I~ATQmLESM~~~p~PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~ 479 (493)
T PRK08187 422 IWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGH 479 (493)
T ss_pred EEEchhhHhhccCCCCchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998 999999999 9999999999999999999986
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.94 E-value=2.2e-26 Score=207.54 Aligned_cols=109 Identities=36% Similarity=0.649 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEccCCchHHHHHhccCCCCcEEEEcCchhhhcccccccccEEEEecCCC-CHHHHHHHH
Q 007936 474 SEEICNSAAKMANNLEVDALFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFSD-DMESNLNRT 552 (584)
Q Consensus 474 ~~~ia~sav~~A~~l~a~aIvv~T~sG~tA~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~~~~-d~~~~i~~~ 552 (584)
.|++|.+|+++|+++++++|+|+|.||+||+++|||||.|||||+|++++++|+|+|+|||+|++++... +.++.++.+
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a 80 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEFDKDTEELIAEA 80 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSHSHSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEeccccccHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999998777 999999999
Q ss_pred HHHHHHcCCCCCCCEEEEEecC-------CceEEEEE
Q 007936 553 FSLLKARGMIKSGDLVIAVSDV-------LQSIQVMN 582 (584)
Q Consensus 553 ~~~~k~~g~i~~GD~Vvvv~g~-------~~sI~v~~ 582 (584)
+++++++|++++||.||+++|. +|+++|++
T Consensus 81 ~~~~~~~g~~~~gd~vVv~~g~~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 81 LEYAKERGLLKPGDKVVVVAGMPFGTPGGTNTIRVVR 117 (117)
T ss_dssp HHHHHHTTSS-TTSEEEEEEESSTTTTSSEEEEEEEE
T ss_pred HHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEC
Confidence 9999999999999999999993 59999975
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.68 E-value=8.7e-17 Score=163.53 Aligned_cols=137 Identities=23% Similarity=0.249 Sum_probs=118.4
Q ss_pred CCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHh------------------------hcCCCCceEEEee
Q 007936 278 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAA------------------------RSRDSDIAVIAKI 333 (584)
Q Consensus 278 lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~------------------------~~~~~~i~IiAKI 333 (584)
+-+++..|...|++++|.|+++|++|+|+|++|++++++.++| ...|.++.++++|
T Consensus 66 ~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~I 145 (249)
T TIGR03239 66 VVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQI 145 (249)
T ss_pred EEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEE
Confidence 4566788999999999999999999999999999999987765 1235678999999
Q ss_pred cCHHHHhcHHHHHHh--CCEEEEeCCcccccCCC------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChh
Q 007936 334 ESIDSLKNLEEIILA--SDGAMVARGDLGAQIPL------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRA 405 (584)
Q Consensus 334 Et~~av~NldeIl~~--sDGImIaRGDLg~ei~~------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrA 405 (584)
||++|++|+|||+++ .|++++|++||+.+++. +++..+..+++.+|+++|||+++.+ ++.
T Consensus 146 Et~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~-----------~~~- 213 (249)
T TIGR03239 146 ESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILA-----------PVE- 213 (249)
T ss_pred CCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcC-----------CCH-
Confidence 999999999999988 89999999999999986 3677888899999999999998642 222
Q ss_pred hHHHHHHHHHcccceEeecCCCC
Q 007936 406 EVADVSEAVRQRADALMLSGESA 428 (584)
Q Consensus 406 Ev~Dv~nav~~G~D~imLs~ETa 428 (584)
.+...++..|++.++++.|+.
T Consensus 214 --~~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 214 --ADARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred --HHHHHHHHcCCCEEEEhHHHH
Confidence 355788999999999998865
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.68 E-value=1e-16 Score=163.58 Aligned_cols=138 Identities=22% Similarity=0.264 Sum_probs=118.8
Q ss_pred cCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHh------------------------hcCCCCceEEEe
Q 007936 277 MLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAA------------------------RSRDSDIAVIAK 332 (584)
Q Consensus 277 ~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~------------------------~~~~~~i~IiAK 332 (584)
.+-++++.|...|++++|.|+++|++|+|+|++|++++.+.++| +..|.++.++++
T Consensus 72 ~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~ 151 (256)
T PRK10558 72 PVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQ 151 (256)
T ss_pred cEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEE
Confidence 34567888999999999999999999999999999999988775 123567899999
Q ss_pred ecCHHHHhcHHHHHHh--CCEEEEeCCcccccCCC------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCCh
Q 007936 333 IESIDSLKNLEEIILA--SDGAMVARGDLGAQIPL------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTR 404 (584)
Q Consensus 333 IEt~~av~NldeIl~~--sDGImIaRGDLg~ei~~------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTr 404 (584)
|||++|++|++||+++ .|++++|++||+.+++. +++..+..+++.+|+++|||+++. .++-
T Consensus 152 IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~-----------~~~~ 220 (256)
T PRK10558 152 IESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL-----------APVE 220 (256)
T ss_pred ECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc-----------CCCH
Confidence 9999999999999987 89999999999999986 368888889999999999999864 2232
Q ss_pred hhHHHHHHHHHcccceEeecCCCC
Q 007936 405 AEVADVSEAVRQRADALMLSGESA 428 (584)
Q Consensus 405 AEv~Dv~nav~~G~D~imLs~ETa 428 (584)
.+...++..|++.++++.|+.
T Consensus 221 ---~~~~~~~~~G~~~v~~~~D~~ 241 (256)
T PRK10558 221 ---ADARRYLEWGATFVAVGSDLG 241 (256)
T ss_pred ---HHHHHHHHcCCCEEEEchHHH
Confidence 345778899999999998865
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.66 E-value=3.1e-16 Score=160.93 Aligned_cols=137 Identities=17% Similarity=0.188 Sum_probs=118.1
Q ss_pred CCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhh-------------------------cCCCCceEEEe
Q 007936 278 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAAR-------------------------SRDSDIAVIAK 332 (584)
Q Consensus 278 lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~-------------------------~~~~~i~IiAK 332 (584)
+-+++..|...|++++|.|+++|++|+|+|+++++++.+..+|- ..|.++.++++
T Consensus 72 lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~q 151 (267)
T PRK10128 72 VIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQ 151 (267)
T ss_pred EEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEE
Confidence 34566778899999999999999999999999999999999751 12457899999
Q ss_pred ecCHHHHhcHHHHHHh--CCEEEEeCCcccccCCC------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCCh
Q 007936 333 IESIDSLKNLEEIILA--SDGAMVARGDLGAQIPL------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTR 404 (584)
Q Consensus 333 IEt~~av~NldeIl~~--sDGImIaRGDLg~ei~~------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTr 404 (584)
|||++|++|++||+++ .|++++|++||+.++++ +++..+.++++++|+++|||+++.. ++.
T Consensus 152 iEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~-----------~~~ 220 (267)
T PRK10128 152 VESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLA-----------VDP 220 (267)
T ss_pred ECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcC-----------CCH
Confidence 9999999999999998 89999999999999986 4778888999999999999999641 222
Q ss_pred hhHHHHHHHHHcccceEeecCCCC
Q 007936 405 AEVADVSEAVRQRADALMLSGESA 428 (584)
Q Consensus 405 AEv~Dv~nav~~G~D~imLs~ETa 428 (584)
.+...++..|++.+.++.|+.
T Consensus 221 ---~~a~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 221 ---DMAQKCLAWGANFVAVGVDTM 241 (267)
T ss_pred ---HHHHHHHHcCCcEEEEChHHH
Confidence 445778899999999998865
No 23
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=3.4e-15 Score=148.30 Aligned_cols=138 Identities=20% Similarity=0.262 Sum_probs=121.0
Q ss_pred cCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHh-------------------------hcCCCCceEEE
Q 007936 277 MLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAA-------------------------RSRDSDIAVIA 331 (584)
Q Consensus 277 ~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~-------------------------~~~~~~i~IiA 331 (584)
++-+++..+...|+..+|.|+..+.+|+|+|+|+.+++.+..+| ..+|+++.+++
T Consensus 70 pvVR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lv 149 (255)
T COG3836 70 PVVRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLV 149 (255)
T ss_pred CeeeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEE
Confidence 44567788999999999999999999999999999999998875 34678899999
Q ss_pred eecCHHHHhcHHHHHHh--CCEEEEeCCcccccCCC------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCC
Q 007936 332 KIESIDSLKNLEEIILA--SDGAMVARGDLGAQIPL------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPT 403 (584)
Q Consensus 332 KIEt~~av~NldeIl~~--sDGImIaRGDLg~ei~~------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PT 403 (584)
||||++|++|||+|+.+ .|||+||++||+.++|. ++|..+.+.++.+.+++||..++-+ +.|
T Consensus 150 qiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~---------~~p- 219 (255)
T COG3836 150 QIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILA---------ADP- 219 (255)
T ss_pred EEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccccc---------CCH-
Confidence 99999999999999999 89999999999999987 4777777889999999999988753 233
Q ss_pred hhhHHHHHHHHHcccceEeecCCCC
Q 007936 404 RAEVADVSEAVRQRADALMLSGESA 428 (584)
Q Consensus 404 rAEv~Dv~nav~~G~D~imLs~ETa 428 (584)
.+....+..|+..+.+..+|.
T Consensus 220 ----~~a~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 220 ----ADARRYLALGATFVAVGSDTG 240 (255)
T ss_pred ----HHHHHHHHhCCeEEEEeccHH
Confidence 345889999999999998875
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.58 E-value=5.7e-15 Score=150.26 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=115.2
Q ss_pred CCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcC-------------------------CCCceEEEe
Q 007936 278 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSR-------------------------DSDIAVIAK 332 (584)
Q Consensus 278 lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~-------------------------~~~i~IiAK 332 (584)
+.+++..|..+|+.+++.|+|+|++|+|+|+++++++.+.++|... |.++.++++
T Consensus 66 ~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~ 145 (249)
T TIGR02311 66 VVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQ 145 (249)
T ss_pred EEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEE
Confidence 3455667778999999999999999999999999999999986211 225789999
Q ss_pred ecCHHHHhcHHHHHHh--CCEEEEeCCcccccCCC------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCCh
Q 007936 333 IESIDSLKNLEEIILA--SDGAMVARGDLGAQIPL------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTR 404 (584)
Q Consensus 333 IEt~~av~NldeIl~~--sDGImIaRGDLg~ei~~------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTr 404 (584)
|||++|++|+|+|+++ .|++++|++||+.+++. +++..+.+++.+.|+.+||+.++.. ++
T Consensus 146 IEt~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~-----------~~- 213 (249)
T TIGR02311 146 VETREALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILT-----------AD- 213 (249)
T ss_pred ecCHHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecC-----------CC-
Confidence 9999999999999987 79999999999999997 2456777889999999999999742 22
Q ss_pred hhHHHHHHHHHcccceEeecCCCC
Q 007936 405 AEVADVSEAVRQRADALMLSGESA 428 (584)
Q Consensus 405 AEv~Dv~nav~~G~D~imLs~ETa 428 (584)
..+...++..|++.++++.|+.
T Consensus 214 --~~~~~~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 214 --PKLARQYLKLGALFVAVGVDTT 235 (249)
T ss_pred --HHHHHHHHHcCCCEEEEchHHH
Confidence 1345778899999999998865
No 25
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.46 E-value=6.7e-14 Score=139.22 Aligned_cols=129 Identities=27% Similarity=0.331 Sum_probs=99.9
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcC-----CCCceEEEeecCHHHHhcHHHHHHh--CCEEEEeCCc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSR-----DSDIAVIAKIESIDSLKNLEEIILA--SDGAMVARGD 358 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~-----~~~i~IiAKIEt~~av~NldeIl~~--sDGImIaRGD 358 (584)
.+||+ +++.|+|+|++|+|++++|++++.+.+++... +.++.++++|||++||+|++||++. .|++++|++|
T Consensus 75 ~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~D 153 (221)
T PF03328_consen 75 ERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPAD 153 (221)
T ss_dssp HHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHH
T ss_pred hhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHH
Confidence 44566 99999999999999999999999999976432 3468999999999999999999965 5899999999
Q ss_pred ccccCCCC------ChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhh--HHHHHHHHHcccceEee
Q 007936 359 LGAQIPLE------QVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAE--VADVSEAVRQRADALML 423 (584)
Q Consensus 359 Lg~ei~~e------~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAE--v~Dv~nav~~G~D~imL 423 (584)
|+.++|.+ ++..+.++++.+|+++|||++-.. .+.+..++ ..+..+++..|+|+-++
T Consensus 154 ls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~~--------~~~~~d~~~~~~~~~~~~~~G~dg~~~ 218 (221)
T PF03328_consen 154 LSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDGV--------FPDFEDAEGLEAEGFRARALGFDGKLC 218 (221)
T ss_dssp HHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEEE--------ESSSSHHHHHHHHHHHCCEEEEHHCCC
T ss_pred HHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEEe--------eCCHHHHHHHHHHHHHHHHHccccccc
Confidence 99999884 588899999999999999765431 12333333 35666777777776543
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.29 E-value=1.6e-11 Score=142.78 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=117.0
Q ss_pred ccCHhhhHHhH-hcCCCE--EEEcCCCCHHHHHHHHHHHHhhcC---CCCceEEEeecCHHHHhcHHHHHHhCCEEEEeC
Q 007936 283 PKDWLDIDFGI-TEGVDF--IAISFVKSAEVINHLKSYIAARSR---DSDIAVIAKIESIDSLKNLEEIILASDGAMVAR 356 (584)
Q Consensus 283 ~kD~~dI~~al-~~gvD~--I~lSfV~saedV~~lr~~l~~~~~---~~~i~IiAKIEt~~av~NldeIl~~sDGImIaR 356 (584)
....+.|.+++ +.|+.. |++|||+++++++++++.+++... +.++.++++||++.|+.|+|+|++++|+++||+
T Consensus 613 ~~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGt 692 (782)
T TIGR01418 613 RLECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGS 692 (782)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECc
Confidence 34566677888 889998 999999999999999999975322 334899999999999999999999999999999
Q ss_pred Ccccc-cCCC---------------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccce
Q 007936 357 GDLGA-QIPL---------------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADA 420 (584)
Q Consensus 357 GDLg~-ei~~---------------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~ 420 (584)
.||+. .++. +.|..+.++++++|+++|||+.++.+|-. ..| ..+...+..|+|.
T Consensus 693 nDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~-----~~p-----~~~~~l~~~G~~~ 762 (782)
T TIGR01418 693 NDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPS-----DYP-----EVVEFLVEEGIDS 762 (782)
T ss_pred hHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC-----CCH-----HHHHHHHHcCCCE
Confidence 99997 4432 46888889999999999999999754320 012 3346778899999
Q ss_pred EeecCCCCCCCChHHHHHHHHHHHHHHhh
Q 007936 421 LMLSGESAMGQFPDKALTVLRSVSLRIEK 449 (584)
Q Consensus 421 imLs~ETa~G~yPveaV~~m~~I~~~aE~ 449 (584)
+..+.++ +..++..+.++|+
T Consensus 763 ls~~~d~---------~~~~k~~i~~~e~ 782 (782)
T TIGR01418 763 ISLNPDA---------VLRTRLQVAEVEK 782 (782)
T ss_pred EEECcch---------HHHHHHHHHHhcC
Confidence 9998653 3455566666663
No 27
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.27 E-value=3.8e-11 Score=139.73 Aligned_cols=147 Identities=19% Similarity=0.170 Sum_probs=118.5
Q ss_pred cCHhhhHHhHh-cCCCE--EEEcCCCCHHHHHHHHHHHHhhcC---CCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCC
Q 007936 284 KDWLDIDFGIT-EGVDF--IAISFVKSAEVINHLKSYIAARSR---DSDIAVIAKIESIDSLKNLEEIILASDGAMVARG 357 (584)
Q Consensus 284 kD~~dI~~al~-~gvD~--I~lSfV~saedV~~lr~~l~~~~~---~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRG 357 (584)
...+.|.++++ .|++. |++|||+++++++++++.+++.+. +.++.++++|||+.|+.|+|+|++++|+++||+.
T Consensus 621 ~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IGtn 700 (795)
T PRK06464 621 LECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSIGSN 700 (795)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEECch
Confidence 45667788899 79998 999999999999999999976432 3478999999999999999999999999999999
Q ss_pred ccccc-CCC---------------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC-CChhhHHHHHHHHHcccce
Q 007936 358 DLGAQ-IPL---------------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPT-PTRAEVADVSEAVRQRADA 420 (584)
Q Consensus 358 DLg~e-i~~---------------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~-PTrAEv~Dv~nav~~G~D~ 420 (584)
||+.. ++. +.|..+.++++++|+++|||++++.+|.. . | ..+...+..|++.
T Consensus 701 DLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~------~~p-----~~~~~l~~~G~~~ 769 (795)
T PRK06464 701 DLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPS------DHP-----DFAEWLVEEGIDS 769 (795)
T ss_pred HHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCC------CcH-----HHHHHHHHCCCCE
Confidence 99973 432 47888889999999999999999765431 1 2 2235677899999
Q ss_pred EeecCCCCCCCChHHHHHHHHHHHHHHhhh
Q 007936 421 LMLSGESAMGQFPDKALTVLRSVSLRIEKW 450 (584)
Q Consensus 421 imLs~ETa~G~yPveaV~~m~~I~~~aE~~ 450 (584)
+..+.+ ++-.++..+.++|+.
T Consensus 770 ls~~~d---------~~~~~k~~i~~~~~~ 790 (795)
T PRK06464 770 ISLNPD---------AVVDTWLAVAEVEKK 790 (795)
T ss_pred EEEcch---------hHHHHHHHHHHhHHH
Confidence 998854 444566667777763
No 28
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.17 E-value=1e-10 Score=121.60 Aligned_cols=132 Identities=21% Similarity=0.191 Sum_probs=105.0
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhh-----cCCCCceEEEeecCHHHHhcHHHHHHh---CCEEE
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAAR-----SRDSDIAVIAKIESIDSLKNLEEIILA---SDGAM 353 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~-----~~~~~i~IiAKIEt~~av~NldeIl~~---sDGIm 353 (584)
|.....||+..++.|+|+|++|+|++++|++.+.++++.. ..+.++.+++.|||++|+.|+++|+.. .||++
T Consensus 71 ~~~~~~di~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~ 150 (288)
T TIGR01588 71 TPFGLADIKAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIA 150 (288)
T ss_pred ChhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEE
Confidence 3445688999999999999999999999999999888531 123468899999999999999999965 57999
Q ss_pred EeCCcccccCCCC------ChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCCh--hh--HHHHHHHHHcccceEee
Q 007936 354 VARGDLGAQIPLE------QVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTR--AE--VADVSEAVRQRADALML 423 (584)
Q Consensus 354 IaRGDLg~ei~~e------~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTr--AE--v~Dv~nav~~G~D~imL 423 (584)
+|+.||+.++|.. ++.++..+++.+|+++|+++|-. +.+.. .| ..+..++-..|++|-+.
T Consensus 151 ~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id~----------v~~~~~d~~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 151 LGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFDT----------VYSDVNNEEGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred eCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcccC----------CccCcCCHHHHHHHHHHHHHcCCCceec
Confidence 9999999999863 58888899999999999998642 22221 11 24566677888876443
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.12 E-value=2.7e-10 Score=128.32 Aligned_cols=135 Identities=16% Similarity=0.071 Sum_probs=110.8
Q ss_pred CCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhh---------cCCCCceEEEeecCHHHHhcHHHHHHhC
Q 007936 279 PTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAAR---------SRDSDIAVIAKIESIDSLKNLEEIILAS 349 (584)
Q Consensus 279 p~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~---------~~~~~i~IiAKIEt~~av~NldeIl~~s 349 (584)
|.+=......|..+++.|...|++|||+++++++++++.+++- ..+.++.+.++|||+.|+.|+|+|++.+
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~v 445 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEV 445 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhC
Confidence 4444555677888999999999999999999999999999751 2356789999999999999999999999
Q ss_pred CEEEEeCCcccc-----c-----CCC------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHH
Q 007936 350 DGAMVARGDLGA-----Q-----IPL------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEA 413 (584)
Q Consensus 350 DGImIaRGDLg~-----e-----i~~------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~na 413 (584)
|+++||+.||+. + ++. +.|..+.++++++|+++||||.++.+|- ..| ..+...
T Consensus 446 Df~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a------~~p-----~~~~~l 514 (565)
T TIGR01417 446 DFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA------GDE-----RAIPLL 514 (565)
T ss_pred CEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC------CCH-----HHHHHH
Confidence 999999999987 3 442 4778888999999999999999864432 112 345778
Q ss_pred HHcccceEeec
Q 007936 414 VRQRADALMLS 424 (584)
Q Consensus 414 v~~G~D~imLs 424 (584)
+..|++.+..+
T Consensus 515 ~~~G~~~lsv~ 525 (565)
T TIGR01417 515 LGLGLRELSMS 525 (565)
T ss_pred HHCCCCEEEEC
Confidence 89999998776
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=99.02 E-value=7.7e-10 Score=124.75 Aligned_cols=133 Identities=15% Similarity=0.068 Sum_probs=108.5
Q ss_pred CCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHh---------hcCCCCceEEEeecCHHHHhcHHHHHHhCCE
Q 007936 281 ISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAA---------RSRDSDIAVIAKIESIDSLKNLEEIILASDG 351 (584)
Q Consensus 281 lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~---------~~~~~~i~IiAKIEt~~av~NldeIl~~sDG 351 (584)
+=....+.|.++.+.|...|++|||.++++++++++.+++ ...+.++.+.++||++.|+.|+|+|++.+|+
T Consensus 369 ~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~~vDf 448 (575)
T PRK11177 369 ILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKEVDF 448 (575)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHhhCCE
Confidence 3344566677889999999999999999999999998864 1235679999999999999999999999999
Q ss_pred EEEeCCcccccC-----C-----------CCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHH
Q 007936 352 AMVARGDLGAQI-----P-----------LEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR 415 (584)
Q Consensus 352 ImIaRGDLg~ei-----~-----------~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~ 415 (584)
+.||+.||+.-+ + -+.|..+.++++++|+++||||.++.+|=. .|.. +.-.+.
T Consensus 449 ~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A~------dp~~-----~~lLlg 517 (575)
T PRK11177 449 FSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELAG------DERA-----TLLLLG 517 (575)
T ss_pred EEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC------CHHH-----HHHHHH
Confidence 999999998822 2 147888889999999999999999977531 2322 245777
Q ss_pred cccceEeec
Q 007936 416 QRADALMLS 424 (584)
Q Consensus 416 ~G~D~imLs 424 (584)
.|.|-+-.+
T Consensus 518 lGi~~lSm~ 526 (575)
T PRK11177 518 MGLDEFSMS 526 (575)
T ss_pred CCCCeEEEC
Confidence 899987665
No 31
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.52 E-value=2.2e-07 Score=96.36 Aligned_cols=134 Identities=22% Similarity=0.213 Sum_probs=107.1
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCce-EEEeecCHHHHhcHHHHHHhC---CEEEEeCC
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIA-VIAKIESIDSLKNLEEIILAS---DGAMVARG 357 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~-IiAKIEt~~av~NldeIl~~s---DGImIaRG 357 (584)
|++-..||...+..++|+|.+|+|+++.|+.++...+....+...+. +++.|||++|+.|..+|...+ .|+.+|-.
T Consensus 66 t~~g~~Dl~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 66 TPWGADDLAAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred ChhhHHHHHHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 55778899999999999999999999999999999985333222233 999999999999999999986 79999999
Q ss_pred cccccCCCC-------ChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhh--HHHHHHHHHcccceEee
Q 007936 358 DLGAQIPLE-------QVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAE--VADVSEAVRQRADALML 423 (584)
Q Consensus 358 DLg~ei~~e-------~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAE--v~Dv~nav~~G~D~imL 423 (584)
||..+++.. .+..+..+|+.+|+.+|++.+.. +. +.-...| ..+..++...|+|+-++
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~-------V~-~d~~d~~g~~~e~~~a~~~Gf~GK~~ 212 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDG-------VY-TDINDPEGFAREAAQAAALGFDGKTC 212 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCcccc-------cc-cccCCHHHHHHHHHHHHHcCCCcccc
Confidence 999988763 56778999999999999998753 11 1111112 36778888999888665
No 32
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.44 E-value=3.3e-06 Score=93.86 Aligned_cols=239 Identities=15% Similarity=0.156 Sum_probs=148.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCC
Q 007936 103 STRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSG 182 (584)
Q Consensus 103 ~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~ 182 (584)
..||+-| | ||.. ..++.+.+..|++++=++|--+....|+..++--.++.+.....+.-- +-.|.
T Consensus 65 ~~RRvei--t-gP~~--~km~~nAlnsgAd~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~i~~~-~~~gk--------- 129 (511)
T cd00727 65 QDRRVEI--T-GPVD--RKMVINALNSGAKVFMADFEDANAPTWENQVEGQINLRDAVRGTISFT-SPEGK--------- 129 (511)
T ss_pred cCceeEE--e-CCCC--HHHHHHHhcCCCCEEEeCcccCCCCChHHHHHHHHHHHHHhcCCCCcc-CCCCc---------
Confidence 3456655 3 7975 899999999999999999998887777777665554443332111000 11111
Q ss_pred CCceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCcee
Q 007936 183 PPSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRANL 262 (584)
Q Consensus 183 ~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~Kgv 262 (584)
.+.|.++-.+.+. -..|.....+.|
T Consensus 130 --~y~l~~~~~~l~V-----------------------------------------------------RprG~hl~e~hv 154 (511)
T cd00727 130 --EYKLNDTPATLIV-----------------------------------------------------RPRGWHLPEKHV 154 (511)
T ss_pred --eeeeCCCCcEEEE-----------------------------------------------------ecCCCCCCcchh
Confidence 2222222111111 111222222222
Q ss_pred eeccCCcccCCccccCCCCCccCHhhhHHhHhc--CCCEEEEcCCCCHHHHHHHHHHHHhhc----C-CCCceEEEeecC
Q 007936 263 TFWRDGSLVRERNAMLPTISPKDWLDIDFGITE--GVDFIAISFVKSAEVINHLKSYIAARS----R-DSDIAVIAKIES 335 (584)
Q Consensus 263 nf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~--gvD~I~lSfV~saedV~~lr~~l~~~~----~-~~~i~IiAKIEt 335 (584)
. .||+.+|+.-+++--+- ..|++..++. |+ ||.+|++++++|++.+.+.+...+ . ...+++++.|||
T Consensus 155 ~--~dg~~~~~~l~Dfgl~~---fhd~~~l~~~g~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET 228 (511)
T cd00727 155 L--VDGEPVSGSLFDFGLYF---FHNAKALLARGSGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIET 228 (511)
T ss_pred h--cCCccCcchhhhHHHHH---HhhHHHHHhcCCCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecC
Confidence 1 12333455444442221 2334434444 47 999999999999999999986321 1 145899999999
Q ss_pred HHHHhcHHHHHHh----CCEEEEeCCcccccCC----C-------C--------ChHH-HHHHHHHHHHHcCCCeEEehh
Q 007936 336 IDSLKNLEEIILA----SDGAMVARGDLGAQIP----L-------E--------QVPS-AQQKIVQLCRQLNKPVIVASQ 391 (584)
Q Consensus 336 ~~av~NldeIl~~----sDGImIaRGDLg~ei~----~-------e--------~V~~-~Qk~II~~c~~~gKPvivATq 391 (584)
..|+-|++||+.. +.|+..||.|+..++. . + .+.. +++.++.+|+++|...|-.
T Consensus 229 ~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AIdG-- 306 (511)
T cd00727 229 LPAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMGG-- 306 (511)
T ss_pred HHHHHHHHHHHHhccCceEEEEcChHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCcccc--
Confidence 9999999999976 3599999999998872 1 1 2333 4777999999999998752
Q ss_pred hhHhhhcCCCCCh-hh----------HHHHHHHHHcccceEeec
Q 007936 392 LLESMIEYPTPTR-AE----------VADVSEAVRQRADALMLS 424 (584)
Q Consensus 392 mLeSMi~~p~PTr-AE----------v~Dv~nav~~G~D~imLs 424 (584)
|-- -.|.+ .+ ..|-.....+|+||-++-
T Consensus 307 ----m~a-~ip~kdd~~~n~~~l~~~r~dk~~~~~lGfDGkwvi 345 (511)
T cd00727 307 ----MAA-QIPIKDDPAANEAALAKVRADKLREATAGHDGTWVA 345 (511)
T ss_pred ----hhh-cCCcccchhhHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 211 12322 11 356677889999997774
No 33
>PRK09255 malate synthase; Validated
Probab=98.34 E-value=9.9e-06 Score=90.49 Aligned_cols=240 Identities=15% Similarity=0.159 Sum_probs=145.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCCC
Q 007936 104 TRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSGP 183 (584)
Q Consensus 104 ~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~~ 183 (584)
.||.-| | ||.. ..++.+.+.+|++++=++|--+....|+.+++--.++.+..+..+. +
T Consensus 87 ~RRvei--t-gP~~--~km~~nAlnsgad~~m~D~EDa~aP~wkn~i~gq~nl~~al~~~i~--------------~--- 144 (531)
T PRK09255 87 DRRVEI--T-GPVD--RKMVINALNSGAKVFMADFEDSNAPTWDNVIDGQINLRDAVRGTIS--------------Y--- 144 (531)
T ss_pred CCeeEE--e-CCCC--HHHHHHHhcCCCCEEEeccccCCCCCchHHHHHHHHHHHHHcCCCC--------------c---
Confidence 466665 3 7976 8999999999999999999888866666666555444433221110 1
Q ss_pred CceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCceee
Q 007936 184 PSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRANLT 263 (584)
Q Consensus 184 ~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~Kgvn 263 (584)
.-+.|..+++..+ . .. ..|-..|.....+.|.
T Consensus 145 ---~~~~Gk~y~l~~~-----~--~~--------------------------------------l~VRprG~hl~e~hv~ 176 (531)
T PRK09255 145 ---TNEAGKEYRLNPK-----P--AV--------------------------------------LIVRPRGWHLPEKHVT 176 (531)
T ss_pred ---cCCCCCeeecCCC-----C--ce--------------------------------------EEEecCCCCCCcchhh
Confidence 0011222222100 0 00 0111112222222222
Q ss_pred eccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhc----C-CCCceEEEeecCHHH
Q 007936 264 FWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARS----R-DSDIAVIAKIESIDS 338 (584)
Q Consensus 264 f~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~----~-~~~i~IiAKIEt~~a 338 (584)
.||+.+|+.-+++--+--.|...+... ..|+ +|.+|++++++|++.+.+.+...+ . ...+++++.|||+.|
T Consensus 177 --vdG~~v~~~l~Dfgl~~fhd~~~l~~~-g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A 252 (531)
T PRK09255 177 --VDGEPISGSLFDFALYFFHNAKELLAK-GSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPA 252 (531)
T ss_pred --cCCcccchhHHHHHHHHHhhHHHHHhC-CCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHH
Confidence 123334454444422222333322222 4567 999999999999999999986321 1 146899999999999
Q ss_pred HhcHHHHHHhC----CEEEEeCCccccc----CCC-------C--------ChHH-HHHHHHHHHHHcCCCeEEehhhhH
Q 007936 339 LKNLEEIILAS----DGAMVARGDLGAQ----IPL-------E--------QVPS-AQQKIVQLCRQLNKPVIVASQLLE 394 (584)
Q Consensus 339 v~NldeIl~~s----DGImIaRGDLg~e----i~~-------e--------~V~~-~Qk~II~~c~~~gKPvivATqmLe 394 (584)
+-|++||+..+ .|+..||.|+..+ ++. + .+.. +++.++.+|+++|...|-.
T Consensus 253 ~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AIdG----- 327 (531)
T PRK09255 253 AFEMDEILYELREHIAGLNCGRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMGG----- 327 (531)
T ss_pred HHHHHHHHHhccCceEEEEcChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccCc-----
Confidence 99999999774 5999999999965 221 1 2333 4788889999999998752
Q ss_pred hhhcCCCCCh----------hh-HHHHHHHHHcccceEeec
Q 007936 395 SMIEYPTPTR----------AE-VADVSEAVRQRADALMLS 424 (584)
Q Consensus 395 SMi~~p~PTr----------AE-v~Dv~nav~~G~D~imLs 424 (584)
|-- -.|.+ +. ..|-.....+|+||-++-
T Consensus 328 -m~a-~ip~k~D~~~n~~a~~g~r~dk~r~~~lGfDGkwvi 366 (531)
T PRK09255 328 -MAA-FIPIKNDPEANEAALAKVRADKEREANDGHDGTWVA 366 (531)
T ss_pred -hhh-cCCcccChhhhHHHHHHHHHHHHHHHhCCCCcceec
Confidence 211 12311 11 256667889999997773
No 34
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.25 E-value=1.1e-05 Score=84.57 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=100.9
Q ss_pred CCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhh---------cCCCCceEEEeecCHHHHhcHHHHHHhC
Q 007936 279 PTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAAR---------SRDSDIAVIAKIESIDSLKNLEEIILAS 349 (584)
Q Consensus 279 p~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~---------~~~~~i~IiAKIEt~~av~NldeIl~~s 349 (584)
|.+=....+.|..+...|-=.|++|||.+.+++.+++++++.. ..+.++++-++||++.++--+|++++.+
T Consensus 119 p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~~ 198 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKEV 198 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTTS
T ss_pred hhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHHC
Confidence 4444555677778878776679999999999999999998642 2345789999999999999999999999
Q ss_pred CEEEEeCCccc-----ccCCC-----------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHH
Q 007936 350 DGAMVARGDLG-----AQIPL-----------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEA 413 (584)
Q Consensus 350 DGImIaRGDLg-----~ei~~-----------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~na 413 (584)
|.+=||-.||. ++=.- +-|....++++++|+++||||.++.+|-. +-.-+--.
T Consensus 199 DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~-----------~p~~~~~L 267 (293)
T PF02896_consen 199 DFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS-----------DPEAIPLL 267 (293)
T ss_dssp SEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG-----------SHHHHHHH
T ss_pred CEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC-----------CHHHHHHH
Confidence 99999998872 22211 25777788999999999999999988652 22334667
Q ss_pred HHcccceEeecC
Q 007936 414 VRQRADALMLSG 425 (584)
Q Consensus 414 v~~G~D~imLs~ 425 (584)
+..|.|.+-.+.
T Consensus 268 l~lGi~~lSv~p 279 (293)
T PF02896_consen 268 LGLGIRSLSVSP 279 (293)
T ss_dssp HHHT-SEEEE-G
T ss_pred HHcCCCEEEECH
Confidence 889999988873
No 35
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.23 E-value=9.6e-06 Score=90.13 Aligned_cols=241 Identities=15% Similarity=0.154 Sum_probs=149.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCC
Q 007936 103 STRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSG 182 (584)
Q Consensus 103 ~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~ 182 (584)
..||+-| | ||. +..++.+.+.+|++++=++|--+....|+.+++--.++.+.....+ |-..|
T Consensus 65 ~~RRvei--t-gP~--d~km~inAlnsgad~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~i----~~~~~--------- 126 (511)
T TIGR01344 65 QDRRVEI--T-GPV--DRKMVINALNAGAKVFMADFEDSSSPTWENVIYGQINLRDAIRGQI----DFTDP--------- 126 (511)
T ss_pred cCCeeEE--e-CCC--CHHHHHHHhcCCCCEEEeCcccCCCCCchhHHHHHHHHHHHHhCcC----CCcCC---------
Confidence 4567766 3 797 6999999999999999999988886666666655444433322111 11100
Q ss_pred CCceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCcee
Q 007936 183 PPSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRANL 262 (584)
Q Consensus 183 ~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~Kgv 262 (584)
++|..+++. + +. -...|-..|.-...|.|
T Consensus 127 ------~~gk~y~l~-~--------------------------------~~------------~~liVRprG~hl~e~hv 155 (511)
T TIGR01344 127 ------TSGKEYALN-A--------------------------------RL------------AVLIVRPRGWHLPERHL 155 (511)
T ss_pred ------CCCceeecC-C--------------------------------Cc------------eEEEEecCCCCCCcchh
Confidence 113222221 0 00 01112223333344444
Q ss_pred eeccCCcccCCccccCCCCCccCHhhhHHhHhcC-CCEEEEcCCCCHHHHHHHHHHHHhhc----CC-CCceEEEeecCH
Q 007936 263 TFWRDGSLVRERNAMLPTISPKDWLDIDFGITEG-VDFIAISFVKSAEVINHLKSYIAARS----RD-SDIAVIAKIESI 336 (584)
Q Consensus 263 nf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~g-vD~I~lSfV~saedV~~lr~~l~~~~----~~-~~i~IiAKIEt~ 336 (584)
. .||+.+|+.-+++--+...| ++..++.| --+|.+|+|++++|++.+.+.+...+ .. ..+++++.|||+
T Consensus 156 ~--~dg~~~~~~l~Dfgl~~~hd---~~~l~~~g~Gp~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~ 230 (511)
T TIGR01344 156 T--IDGEAIPGSLFDFGLYFFHN---ARALLKKGKGPYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETL 230 (511)
T ss_pred c--cCCCcCchHHHHHHHHHHhh---HHHHHhCCCCCEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCH
Confidence 2 23444666655553333333 33335552 24999999999999999998886321 11 458999999999
Q ss_pred HHHhcHHHHHHh----CCEEEEeCCcccccCC----C----------------CChHHHHHHHHHHHHHcCCCeEEehhh
Q 007936 337 DSLKNLEEIILA----SDGAMVARGDLGAQIP----L----------------EQVPSAQQKIVQLCRQLNKPVIVASQL 392 (584)
Q Consensus 337 ~av~NldeIl~~----sDGImIaRGDLg~ei~----~----------------e~V~~~Qk~II~~c~~~gKPvivATqm 392 (584)
.|+-|++||+.. +.|+..||.|+..++. . +-+..+++.++.+|+++|...|--
T Consensus 231 ~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AIdG--- 307 (511)
T TIGR01344 231 PAAFEMDEILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMGG--- 307 (511)
T ss_pred HHHHhHHHHHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccCc---
Confidence 999999999976 4699999999984433 1 223344788889999999998852
Q ss_pred hHhhhcCCCCCh--------hh---HHHHHHHHHcccceEeec
Q 007936 393 LESMIEYPTPTR--------AE---VADVSEAVRQRADALMLS 424 (584)
Q Consensus 393 LeSMi~~p~PTr--------AE---v~Dv~nav~~G~D~imLs 424 (584)
|-- -.|-+ |- ..|-.....+|+||-++-
T Consensus 308 ---m~a-~ip~k~D~~~n~~al~~vr~dk~re~~lGfDGkwvi 346 (511)
T TIGR01344 308 ---MAA-FIPIKGDPAANEAAMNKVRADKIREAKNGHDGTWVA 346 (511)
T ss_pred ---hhc-cCCcccChhhHHHHHHHHHHHHHHHHhCCCCccccC
Confidence 211 01222 11 356667889999997763
No 36
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.23 E-value=2.4e-05 Score=87.56 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=90.9
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHHhhc--CC---CCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCcccccCCCC-
Q 007936 297 VDFIAISFVKSAEVINHLKSYIAARS--RD---SDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGDLGAQIPLE- 366 (584)
Q Consensus 297 vD~I~lSfV~saedV~~lr~~l~~~~--~~---~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGDLg~ei~~e- 366 (584)
--||.+|+|++++|+..+.+.+...+ .+ ..+++++.|||..|+-|++||+.. +.|+..|+.||..+++..
T Consensus 185 gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~~ 264 (511)
T cd00480 185 GPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKTF 264 (511)
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhcccc
Confidence 34899999999999999998885311 11 358999999999999999999977 349999999999988421
Q ss_pred ------------------C-hHHHHHHHHHHHHHcCCCeEEe--hhhh-HhhhcCCCCChhh-HHHHHHHHHcccceEee
Q 007936 367 ------------------Q-VPSAQQKIVQLCRQLNKPVIVA--SQLL-ESMIEYPTPTRAE-VADVSEAVRQRADALML 423 (584)
Q Consensus 367 ------------------~-V~~~Qk~II~~c~~~gKPvivA--TqmL-eSMi~~p~PTrAE-v~Dv~nav~~G~D~imL 423 (584)
. +..+++.++.+|+++|.+.|-. .|+- .-|-..+...-+. ..|...+...|+||-+.
T Consensus 265 ~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkwv 344 (511)
T cd00480 265 RNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTWV 344 (511)
T ss_pred ccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCcccc
Confidence 2 5556788999999999987532 1110 0000000001111 26667788999998766
Q ss_pred c
Q 007936 424 S 424 (584)
Q Consensus 424 s 424 (584)
-
T Consensus 345 i 345 (511)
T cd00480 345 A 345 (511)
T ss_pred c
Confidence 4
No 37
>PLN02626 malate synthase
Probab=97.88 E-value=0.0003 Score=78.61 Aligned_cols=125 Identities=15% Similarity=0.210 Sum_probs=90.0
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhhc-----CCCCceEEEeecCHHHHhcHHHHHHhC----CEEEEeCCcc----cccCC
Q 007936 298 DFIAISFVKSAEVINHLKSYIAARS-----RDSDIAVIAKIESIDSLKNLEEIILAS----DGAMVARGDL----GAQIP 364 (584)
Q Consensus 298 D~I~lSfV~saedV~~lr~~l~~~~-----~~~~i~IiAKIEt~~av~NldeIl~~s----DGImIaRGDL----g~ei~ 364 (584)
-||.+|++++++|++.+.+.+...+ ....+++.+.|||..|+-|++||+..+ -|+..||-|+ ...++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 4899999999999999999886311 124689999999999999999999774 5999999999 33322
Q ss_pred C-------C--C----hHHHH---HHHHHHHHHcCCCeEEehhhhHhh--hcCCCCChhhH----HHHHHHHHcccceEe
Q 007936 365 L-------E--Q----VPSAQ---QKIVQLCRQLNKPVIVASQLLESM--IEYPTPTRAEV----ADVSEAVRQRADALM 422 (584)
Q Consensus 365 ~-------e--~----V~~~Q---k~II~~c~~~gKPvivATqmLeSM--i~~p~PTrAEv----~Dv~nav~~G~D~im 422 (584)
. + . ++.++ +.++..|+++|...|-. |---+ .+.|.+..+.. .|-.....+|+||-+
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIgG--M~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~w 370 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMGG--MAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTW 370 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCccccc--ccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCcee
Confidence 1 1 2 44444 49999999999997752 22212 11233322222 566678999999988
Q ss_pred ec
Q 007936 423 LS 424 (584)
Q Consensus 423 Ls 424 (584)
.-
T Consensus 371 Vi 372 (551)
T PLN02626 371 AA 372 (551)
T ss_pred ec
Confidence 74
No 38
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.29 E-value=0.00077 Score=79.03 Aligned_cols=119 Identities=17% Similarity=0.116 Sum_probs=92.4
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHh-------h-cCC-CCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCccc-----
Q 007936 295 EGVDFIAISFVKSAEVINHLKSYIAA-------R-SRD-SDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLG----- 360 (584)
Q Consensus 295 ~gvD~I~lSfV~saedV~~lr~~l~~-------~-~~~-~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg----- 360 (584)
.|-=.|++|||.+.+++.++|+.++. . +.. .++.+=++||+|.|+--+|++++.+|.+=||-.||.
T Consensus 549 ~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGtNDL~Qy~la 628 (748)
T PRK11061 549 TGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLA 628 (748)
T ss_pred CCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHHH
Confidence 45557999999999999999999863 1 111 247899999999999999999999999999999973
Q ss_pred ccCCC-----------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 361 AQIPL-----------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 361 ~ei~~-----------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
++=.- +-|....++++++|+++||||.++-+|= . .|... --.+..|.|.+-.+
T Consensus 629 ~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a----~--dp~~~-----~~L~glGi~~lS~~ 692 (748)
T PRK11061 629 VDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMA----G--DPMGA-----LLLIGLGYRHLSMN 692 (748)
T ss_pred hcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCcc----c--CHHHH-----HHHHHCCCcEEccC
Confidence 22111 3577788999999999999999997754 1 23333 45677888886554
No 39
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=96.96 E-value=0.0045 Score=73.61 Aligned_cols=136 Identities=19% Similarity=0.129 Sum_probs=99.6
Q ss_pred CCCCCccCHhhhHHhHhc----CCC---EEEEcCCCCHHHHHHHHHHHHhh--------cCCCCceEEEeecCHHHHhcH
Q 007936 278 LPTISPKDWLDIDFGITE----GVD---FIAISFVKSAEVINHLKSYIAAR--------SRDSDIAVIAKIESIDSLKNL 342 (584)
Q Consensus 278 lp~lt~kD~~dI~~al~~----gvD---~I~lSfV~saedV~~lr~~l~~~--------~~~~~i~IiAKIEt~~av~Nl 342 (584)
.|.+-+-..+.|-.|... |.+ -|++|||.+.++++++|+.++.- +...++.|-++||++.|.-.+
T Consensus 669 ~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~a 748 (856)
T TIGR01828 669 YPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTA 748 (856)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHH
Confidence 344444555555444443 633 79999999999999999988631 122347899999999999999
Q ss_pred HHHHHhCCEEEEeCCcccc-----c-------------------CCC-----CChHHHHHHHHHHHHH--cCCCeEEehh
Q 007936 343 EEIILASDGAMVARGDLGA-----Q-------------------IPL-----EQVPSAQQKIVQLCRQ--LNKPVIVASQ 391 (584)
Q Consensus 343 deIl~~sDGImIaRGDLg~-----e-------------------i~~-----e~V~~~Qk~II~~c~~--~gKPvivATq 391 (584)
|+|++.+|.+-||-.||.- + =|+ +-|....+++++.|++ .|+||.++-+
T Consensus 749 d~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE 828 (856)
T TIGR01828 749 DKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGE 828 (856)
T ss_pred HHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCC
Confidence 9999999999999888631 1 122 2367777899999998 8999999876
Q ss_pred hhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 392 LLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 392 mLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+- ..|.- +...+..|.|.+-.|
T Consensus 829 ~a------~dp~~-----i~~l~~~Gi~~~S~s 850 (856)
T TIGR01828 829 HG------GDPSS-----IEFCHKIGLNYVSCS 850 (856)
T ss_pred Cc------CCHHH-----HHHHHHCCCCEEEEC
Confidence 42 22333 356677899988776
No 40
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.52 E-value=0.022 Score=61.72 Aligned_cols=122 Identities=24% Similarity=0.226 Sum_probs=76.0
Q ss_pred CHhhhHHhHhcCCCEEEEcC-------CCCHHHHHHHHHHHHhhcCCCCceEEE-eecCHHHHhcHHHHHHhCCEEEEeC
Q 007936 285 DWLDIDFGITEGVDFIAISF-------VKSAEVINHLKSYIAARSRDSDIAVIA-KIESIDSLKNLEEIILASDGAMVAR 356 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSf-------V~saedV~~lr~~l~~~~~~~~i~IiA-KIEt~~av~NldeIl~~sDGImIaR 356 (584)
..+.++..++.|+|+|++.. ..++.+...++++++ .. ++.||+ .|-|.+....+.+ .=+|+||+|+
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik--~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~ 216 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIY--EL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGI 216 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHH--HC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECC
Confidence 34555667899999999954 333324555666663 22 478887 8888887766665 4589999999
Q ss_pred CcccccCCC--C--ChHHHH--HHHHHHHHHc-------CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 357 GDLGAQIPL--E--QVPSAQ--QKIVQLCRQL-------NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 357 GDLg~ei~~--e--~V~~~Q--k~II~~c~~~-------gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
|-=+..... . .+|.+. ....+.++++ +.|||.+--+- .-.|++.|+..|||++|+
T Consensus 217 G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~------------~~~diakAlalGAd~Vm~ 284 (368)
T PRK08649 217 GPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIG------------TSGDIAKAIACGADAVML 284 (368)
T ss_pred CCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC------------CHHHHHHHHHcCCCeecc
Confidence 862111111 0 122111 1122222222 68999875433 237999999999999998
Q ss_pred c
Q 007936 424 S 424 (584)
Q Consensus 424 s 424 (584)
.
T Consensus 285 G 285 (368)
T PRK08649 285 G 285 (368)
T ss_pred c
Confidence 4
No 41
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=96.47 E-value=0.015 Score=65.66 Aligned_cols=128 Identities=17% Similarity=0.108 Sum_probs=96.8
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHh-------h--cCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeC
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAA-------R--SRDSDIAVIAKIESIDSLKNLEEIILASDGAMVAR 356 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~-------~--~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaR 356 (584)
.+.|-+|-.+|-=.|++|+|-+.++++++|+.+.. . ..+.++.+=.+||+|.|.-.+|.+++.+|-+=||-
T Consensus 375 LRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFfSIGT 454 (574)
T COG1080 375 LRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFFSIGT 454 (574)
T ss_pred HHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhCCEeeecc
Confidence 34445666778888999999999999999988852 1 12336889999999999999999999999999999
Q ss_pred Cccc-----ccCCC-----------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccce
Q 007936 357 GDLG-----AQIPL-----------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADA 420 (584)
Q Consensus 357 GDLg-----~ei~~-----------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~ 420 (584)
.||. ++=+- +-|....+++|+.++++||||+++.+|= ..|.-. --.+-.|.|=
T Consensus 455 NDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGElA------gD~~a~-----plLlGlGldE 523 (574)
T COG1080 455 NDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGELA------GDPAAT-----PLLLGLGLDE 523 (574)
T ss_pred cHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhhc------cChhhH-----HHHHhcCcch
Confidence 9963 22222 3677888999999999999999986542 122221 3356677776
Q ss_pred Eeec
Q 007936 421 LMLS 424 (584)
Q Consensus 421 imLs 424 (584)
+-.|
T Consensus 524 lSms 527 (574)
T COG1080 524 LSMS 527 (574)
T ss_pred hccC
Confidence 5554
No 42
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=95.98 E-value=0.043 Score=65.55 Aligned_cols=137 Identities=20% Similarity=0.160 Sum_probs=100.1
Q ss_pred cCCCCCccCHhhhHHhHh----cCCC---EEEEcCCCCHHHHHHHHHHHHh------h--cCCCCceEEEeecCHHHHhc
Q 007936 277 MLPTISPKDWLDIDFGIT----EGVD---FIAISFVKSAEVINHLKSYIAA------R--SRDSDIAVIAKIESIDSLKN 341 (584)
Q Consensus 277 ~lp~lt~kD~~dI~~al~----~gvD---~I~lSfV~saedV~~lr~~l~~------~--~~~~~i~IiAKIEt~~av~N 341 (584)
..|.+.+-..+.|-.|.. .|.+ -|++|||.+.++++.+|+.+.. . +...+++|=.+||++.|.--
T Consensus 674 ~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ 753 (879)
T PRK09279 674 TYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALT 753 (879)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHh
Confidence 345555555556654443 3643 4999999999999999997742 1 22235789999999999999
Q ss_pred HHHHHHhCCEEEEeCCccccc------------C------------CCC-----ChHHHHHHHHHHHHH--cCCCeEEeh
Q 007936 342 LEEIILASDGAMVARGDLGAQ------------I------------PLE-----QVPSAQQKIVQLCRQ--LNKPVIVAS 390 (584)
Q Consensus 342 ldeIl~~sDGImIaRGDLg~e------------i------------~~e-----~V~~~Qk~II~~c~~--~gKPvivAT 390 (584)
.|+|++.+|.+-||-.||.-- + |+. -|....+..+++|++ .|+||.++-
T Consensus 754 ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICG 833 (879)
T PRK09279 754 ADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICG 833 (879)
T ss_pred HHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 999999999999998886421 1 222 366777889999998 799999986
Q ss_pred hhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 391 QLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 391 qmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
++= ..|. -+.-++..|.|.+-.|
T Consensus 834 E~g------gdp~-----~i~~l~~lGld~vS~s 856 (879)
T PRK09279 834 EHG------GDPA-----SIEFCHKVGLDYVSCS 856 (879)
T ss_pred CCc------cCHH-----HHHHHHHCCCCEEEEC
Confidence 542 2333 3466788899998877
No 43
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=95.93 E-value=0.034 Score=62.26 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhhcC---------------------CCCceEEEeecCHHHHhcHHHHHHh----CC
Q 007936 296 GVDFIAISFVKSAEVINHLKSYIAARSR---------------------DSDIAVIAKIESIDSLKNLEEIILA----SD 350 (584)
Q Consensus 296 gvD~I~lSfV~saedV~~lr~~l~~~~~---------------------~~~i~IiAKIEt~~av~NldeIl~~----sD 350 (584)
.+-.|++||.++++||.++..+.+.... ...+.||.-+||.+++.|.++|++. .+
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 5568999999999999999988864321 1245899999999999999999977 11
Q ss_pred ----EEEEeCCcccccCCCC----ChHHHHHHHHHHHHHcCCCeEE
Q 007936 351 ----GAMVARGDLGAQIPLE----QVPSAQQKIVQLCRQLNKPVIV 388 (584)
Q Consensus 351 ----GImIaRGDLg~ei~~e----~V~~~Qk~II~~c~~~gKPviv 388 (584)
-||+||.|=+.+.|.- .+..+|.++.+.|+++|.++..
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 7899999999999873 6788999999999999999765
No 44
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.55 E-value=0.17 Score=54.00 Aligned_cols=124 Identities=23% Similarity=0.354 Sum_probs=76.7
Q ss_pred ccCHhhhHHhHhcCCCEEEEcCCC-CHHHHHHHHHHHHhhcCCCCceEEE-eecCHHHHhcHHHHHHhCCEEEEe--CCc
Q 007936 283 PKDWLDIDFGITEGVDFIAISFVK-SAEVINHLKSYIAARSRDSDIAVIA-KIESIDSLKNLEEIILASDGAMVA--RGD 358 (584)
Q Consensus 283 ~kD~~dI~~al~~gvD~I~lSfV~-saedV~~lr~~l~~~~~~~~i~IiA-KIEt~~av~NldeIl~~sDGImIa--RGD 358 (584)
+.+.+.++..++.|+|+|.+++-. +.+.+.++.+.++.. ..++.|++ .+.|.+...++.+ .=+|+|.++ +|-
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~--~p~v~Vi~G~v~t~~~A~~l~~--aGaD~I~vg~g~G~ 168 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK--YPNVDVIAGNVVTAEAARDLID--AGADGVKVGIGPGS 168 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH--CCCceEEECCCCCHHHHHHHHh--cCCCEEEECCCCCc
Confidence 456777888899999999987642 224444444445322 22477776 7777666655443 238999984 322
Q ss_pred cc--c---cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 359 LG--A---QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 359 Lg--~---ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
-. - ..+.+.+ .+-..+.+.|++.++|||-+-. .. .-.|++.|+..|+|++|+
T Consensus 169 ~~~t~~~~g~g~p~~-~~i~~v~~~~~~~~vpVIA~GG---------I~---~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 169 ICTTRIVTGVGVPQA-TAVADVAAAARDYGVPVIADGG---------IR---TSGDIVKALAAGADAVML 225 (325)
T ss_pred CcccceeCCCCCCHH-HHHHHHHHHHhhcCCcEEecCC---------CC---CHHHHHHHHHcCCCEEEe
Confidence 10 0 0111222 2334566777778999986432 22 246889999999999999
No 45
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.31 E-value=0.3 Score=52.75 Aligned_cols=123 Identities=24% Similarity=0.374 Sum_probs=82.9
Q ss_pred CccCHhhhHHhHhcCCCEEEE--cCCCCHHHHHHHHHHHHhhcCCCCce-EEEeecCHHHHhcHHHHHHhCCEEEEeCCc
Q 007936 282 SPKDWLDIDFGITEGVDFIAI--SFVKSAEVINHLKSYIAARSRDSDIA-VIAKIESIDSLKNLEEIILASDGAMVARGD 358 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~l--SfV~saedV~~lr~~l~~~~~~~~i~-IiAKIEt~~av~NldeIl~~sDGImIaRGD 358 (584)
.+.|.+-++..++.|+|+|++ +...+...+..++++- +..+ ++. |.--+-|.++.++|-+ .-+|+|.||=|-
T Consensus 106 ~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik--~~~~-~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGp 180 (352)
T PF00478_consen 106 RDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIK--KKFP-DVPVIAGNVVTYEGAKDLID--AGADAVKVGIGP 180 (352)
T ss_dssp STCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHH--HHST-TSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSS
T ss_pred CHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHH--HhCC-CceEEecccCCHHHHHHHHH--cCCCEEEEeccC
Confidence 345677777778899999988 6888887777776544 2233 455 5557999999987544 238999998663
Q ss_pred ---------ccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 359 ---------LGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 359 ---------Lg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+|+-.| -..+--...+.|+++++|||---.+ ---.|++.|+..|||++||.
T Consensus 181 GsiCtTr~v~GvG~P---Q~tAv~~~a~~a~~~~v~iIADGGi------------~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 181 GSICTTREVTGVGVP---QLTAVYECAEAARDYGVPIIADGGI------------RTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp STTBHHHHHHSBSCT---HHHHHHHHHHHHHCTTSEEEEESS-------------SSHHHHHHHHHTT-SEEEES
T ss_pred CcccccccccccCCc---HHHHHHHHHHHhhhccCceeecCCc------------Ccccceeeeeeecccceeec
Confidence 233333 3345556777888889999954221 13589999999999999993
No 46
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.28 E-value=0.11 Score=56.58 Aligned_cols=121 Identities=23% Similarity=0.312 Sum_probs=70.0
Q ss_pred HhhhHHhHhcCCCEEEEc-------CCCCHHHHHHHHHHHHhhcCCCCceEEE-eecCHHHHhcHHHHHHhCCEEEEeCC
Q 007936 286 WLDIDFGITEGVDFIAIS-------FVKSAEVINHLKSYIAARSRDSDIAVIA-KIESIDSLKNLEEIILASDGAMVARG 357 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lS-------fV~saedV~~lr~~l~~~~~~~~i~IiA-KIEt~~av~NldeIl~~sDGImIaRG 357 (584)
.+..+.+++.|+|.|++. |+....+-..++++++ . .+++||+ .+-|.+....+-+ .=+|+||+|||
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~--~--~~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~g 218 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIG--E--LDVPVIAGGVNDYTTALHLMR--TGAAGVIVGPG 218 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHH--H--CCCCEEEeCCCCHHHHHHHHH--cCCCEEEECCC
Confidence 344567789999999975 2222223344555552 2 2478887 7777666655444 34899999986
Q ss_pred cccccCCC--CChH--HHHHHHHHHHH----HcC---CCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 358 DLGAQIPL--EQVP--SAQQKIVQLCR----QLN---KPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 358 DLg~ei~~--e~V~--~~Qk~II~~c~----~~g---KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
--...-.. ..+| .+-..+.++++ +.| +|||.+.-+- + -.|++.|+..|||++|+.
T Consensus 219 g~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~---------t---g~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 219 GANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIE---------T---SGDLVKAIACGADAVVLG 284 (369)
T ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCC---------C---HHHHHHHHHcCCCEeeeH
Confidence 42111000 0122 11112222222 123 8999775433 2 369999999999999995
No 47
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=94.75 E-value=0.15 Score=57.22 Aligned_cols=96 Identities=22% Similarity=0.238 Sum_probs=80.3
Q ss_pred hcCCCEEEEcCCCCHHHHHHHHHHHHhhc--C----------CCCceEEEeecCHHHHhcHHHHHHh--C--------CE
Q 007936 294 TEGVDFIAISFVKSAEVINHLKSYIAARS--R----------DSDIAVIAKIESIDSLKNLEEIILA--S--------DG 351 (584)
Q Consensus 294 ~~gvD~I~lSfV~saedV~~lr~~l~~~~--~----------~~~i~IiAKIEt~~av~NldeIl~~--s--------DG 351 (584)
...+-.+++||.++++|+.++..+++... . ...+.|+.-+||.+.+.|.++|++. . =-
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 45567899999999999999998886432 1 1257899999999999999999976 1 27
Q ss_pred EEEeCCcccccCCCC----ChHHHHHHHHHHHHHcCCCeEEe
Q 007936 352 AMVARGDLGAQIPLE----QVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 352 ImIaRGDLg~ei~~e----~V~~~Qk~II~~c~~~gKPvivA 389 (584)
||+|+.|=+.+-|.- .+..+|+++.+.|+++|.++..-
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~f 240 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYPI 240 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 999999999998873 78899999999999999987653
No 48
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.63 E-value=0.34 Score=54.74 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=78.8
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCCC--CHH---HHHHHHHHHHhhcCCCCceEEEe-ecCHHHHhcHHHHHHhCCEEEEe
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFVK--SAE---VINHLKSYIAARSRDSDIAVIAK-IESIDSLKNLEEIILASDGAMVA 355 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV~--sae---dV~~lr~~l~~~~~~~~i~IiAK-IEt~~av~NldeIl~~sDGImIa 355 (584)
.+.+.+-++..++.|+|.|++---. +.. .|+++|+.. .+..||++ |-|.+...++.+ .=+|+|.++
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~------p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg 317 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTY------PELDVIGGNVVTMYQAQNLIQ--AGVDGLRVG 317 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhC------CCCcEEEecCCCHHHHHHHHH--cCcCEEEEC
Confidence 4566777888899999999986543 222 333333321 24678775 999988777665 348999986
Q ss_pred --CCccccc-----CCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 356 --RGDLGAQ-----IPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 356 --RGDLg~e-----i~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+|--... .+.+.+ ..-..+.+.+++.++|||...-+- --.|+..|+..|||++|+.
T Consensus 318 ~g~G~~~~t~~~~~~g~~~~-~~i~~~~~~~~~~~vpVIadGGI~------------~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 318 MGSGSICTTQEVCAVGRGQA-TAVYKVASIAAQHGVPVIADGGIS------------NSGHIVKALTLGASTVMMG 380 (505)
T ss_pred CCCCccccCccccccCCCcc-cHHHHHHHHHHhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 4411111 122222 233336666777899999764332 2378999999999999985
No 49
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.57 E-value=0.35 Score=54.52 Aligned_cols=124 Identities=25% Similarity=0.356 Sum_probs=78.8
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCC--CCHHHHHHHHHHHHhhcCCCCceEEE-eecCHHHHhcHHHHHHh-CCEEEEe--
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFV--KSAEVINHLKSYIAARSRDSDIAVIA-KIESIDSLKNLEEIILA-SDGAMVA-- 355 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV--~saedV~~lr~~l~~~~~~~~i~IiA-KIEt~~av~NldeIl~~-sDGImIa-- 355 (584)
++.+.+.++..++.|+|.|.+..- .+...++.++++-+ . . .++.|+| -+-|.+...+ .+++ +|+|.+|
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~-~-~-~~~~v~aG~V~t~~~a~~---~~~aGad~I~vg~g 312 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS-N-Y-PHVDIIAGNVVTADQAKN---LIDAGADGLRIGMG 312 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh-h-C-CCceEEECCcCCHHHHHH---HHHcCCCEEEECCc
Confidence 345577778889999999998764 44443333333221 1 1 2478888 5666655544 3445 8999864
Q ss_pred CCcc-----cccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 356 RGDL-----GAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 356 RGDL-----g~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+|-- -...+.+.+ .+-..+.+.|++.|.|+|...-+. --.|++.|+..|||++|+.
T Consensus 313 ~Gs~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~vIadGGi~------------~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 313 SGSICITQEVCAVGRPQA-SAVYHVARYARERGVPCIADGGIK------------NSGDICKALALGADCVMLG 373 (495)
T ss_pred CCcccccchhccCCCChH-HHHHHHHHHHhhcCCeEEecCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 5521 122333332 344567788899999998643322 2378899999999999995
No 50
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=94.32 E-value=0.31 Score=55.40 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=97.1
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhh---------cCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcc-----cccC
Q 007936 298 DFIAISFVKSAEVINHLKSYIAAR---------SRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDL-----GAQI 363 (584)
Q Consensus 298 D~I~lSfV~saedV~~lr~~l~~~---------~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDL-----g~ei 363 (584)
=-|.+|+|.+.++++++++++... ..-..++|=+++|-+..+=.+++++...|-|=||-.|| +++=
T Consensus 560 L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvDR 639 (756)
T COG3605 560 LRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVDR 639 (756)
T ss_pred ceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHHhc
Confidence 369999999999999999999641 11234678899999999999999999999999999996 3443
Q ss_pred CC-----------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCC
Q 007936 364 PL-----------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQ 431 (584)
Q Consensus 364 ~~-----------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~ 431 (584)
+- +.+..+-|+|.+.|.++|+||-++.+|- ..|--| .--+..|+|.+-.+ -|++|+
T Consensus 640 ~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA------g~Pl~A-----~~LigLGfrslSMn-~~~v~~ 706 (756)
T COG3605 640 NNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA------GDPLSA-----MALIGLGFRSLSMN-PRSVGP 706 (756)
T ss_pred CCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhc------CChHHH-----HHHHhcCcCccccC-cccccc
Confidence 33 2466778999999999999999987764 455555 55678899998776 456664
No 51
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.27 E-value=0.44 Score=52.99 Aligned_cols=125 Identities=24% Similarity=0.303 Sum_probs=79.8
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCC--CCHHHHHHHHHHHHhhcCCCCceEEE-eecCHHHHhcHHHHHHhCCEEEEe--C
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFV--KSAEVINHLKSYIAARSRDSDIAVIA-KIESIDSLKNLEEIILASDGAMVA--R 356 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV--~saedV~~lr~~l~~~~~~~~i~IiA-KIEt~~av~NldeIl~~sDGImIa--R 356 (584)
.+.+.+.++..++.|+|+|.+-.. .+. .+.+..+.++.. . .++.|++ -+-|+++..++-+ .=+|+|-|| +
T Consensus 222 ~~~~~~r~~~L~~aG~d~I~vd~a~g~~~-~~~~~i~~i~~~-~-~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~ 296 (450)
T TIGR01302 222 REFDKERAEALVKAGVDVIVIDSSHGHSI-YVIDSIKEIKKT-Y-PDLDIIAGNVATAEQAKALID--AGADGLRVGIGP 296 (450)
T ss_pred chhHHHHHHHHHHhCCCEEEEECCCCcHh-HHHHHHHHHHHh-C-CCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCC
Confidence 556777788889999999998664 223 233333333211 1 2467777 7888887766654 238999865 5
Q ss_pred Ccccc-----cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 357 GDLGA-----QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 357 GDLg~-----ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
|--.. ..+.+.+ .+...+.+.|++.+.|+|...-+- --.|++.|+..|||++|+.
T Consensus 297 G~~~~t~~~~~~g~p~~-~~i~~~~~~~~~~~vpviadGGi~------------~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 297 GSICTTRIVAGVGVPQI-TAVYDVAEYAAQSGIPVIADGGIR------------YSGDIVKALAAGADAVMLG 356 (450)
T ss_pred CcCCccceecCCCccHH-HHHHHHHHHHhhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 52111 1222222 444567777888999988643322 2368899999999999995
No 52
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.21 E-value=0.54 Score=50.47 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=77.3
Q ss_pred CccCHhhhHHhHhc--CCCEEEEcCC--CCHHHHHHHHHHHHhhcCCCCceEEEe-ecCHHHHhcHHHHHHhCCEEEEeC
Q 007936 282 SPKDWLDIDFGITE--GVDFIAISFV--KSAEVINHLKSYIAARSRDSDIAVIAK-IESIDSLKNLEEIILASDGAMVAR 356 (584)
Q Consensus 282 t~kD~~dI~~al~~--gvD~I~lSfV--~saedV~~lr~~l~~~~~~~~i~IiAK-IEt~~av~NldeIl~~sDGImIaR 356 (584)
++.|.+-++..++. ++|+|++--. .|...++.++. ++.. . .+..||+- |-|+++.+++-+ .=+|+|.|+=
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~-ir~~-~-p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgi 179 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKL-VREA-F-PEHTIMAGNVVTGEMVEELIL--SGADIVKVGI 179 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHhh-C-CCCeEEEecccCHHHHHHHHH--cCCCEEEEcc
Confidence 56677777777777 4999887433 33333333333 3211 1 34788888 999999876543 3489999873
Q ss_pred CcccccCC--CCChHHHH----HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 357 GDLGAQIP--LEQVPSAQ----QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 357 GDLg~ei~--~e~V~~~Q----k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
|-=++... ..-++..| ..+.++++..++|||.-.-+= .-.||+.|+..|||++|+.
T Consensus 180 GpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr------------~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 180 GPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCT------------CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred cCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcC------------chhHHHHHHHcCCCEEEEC
Confidence 22122221 12233223 344455555678888643221 2489999999999999996
No 53
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=93.93 E-value=0.25 Score=59.43 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=79.6
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhhcCC------CCceEEEeecCHHHHhcHHHHHHh--C------------C--EEE
Q 007936 296 GVDFIAISFVKSAEVINHLKSYIAARSRD------SDIAVIAKIESIDSLKNLEEIILA--S------------D--GAM 353 (584)
Q Consensus 296 gvD~I~lSfV~saedV~~lr~~l~~~~~~------~~i~IiAKIEt~~av~NldeIl~~--s------------D--GIm 353 (584)
.+..+++|+.++++||.++-.+++..+.. ..+.|+.-+||.+.++|.++|++. . + -||
T Consensus 486 ~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeVM 565 (911)
T PRK00009 486 AIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEVM 565 (911)
T ss_pred hhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEEE
Confidence 56679999999999999999998642211 257899999999999999999987 1 1 699
Q ss_pred EeCCcccccCCCC----ChHHHHHHHHHHHHHcCCCeEEe
Q 007936 354 VARGDLGAQIPLE----QVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 354 IaRGDLg~ei~~e----~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+|..|=+-+-|.- .+..+|+++.+.|+++|.++.+.
T Consensus 566 lGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~F 605 (911)
T PRK00009 566 LGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLF 605 (911)
T ss_pred eecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 9999988888873 78899999999999999998764
No 54
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=93.40 E-value=4.9 Score=41.64 Aligned_cols=158 Identities=14% Similarity=0.248 Sum_probs=101.2
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHhH-hcCCCEEEEcCCCCHHH----------HHHHHHHHHhhcCCCCceEEEeec
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFGI-TEGVDFIAISFVKSAEV----------INHLKSYIAARSRDSDIAVIAKIE 334 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~al-~~gvD~I~lSfV~saed----------V~~lr~~l~~~~~~~~i~IiAKIE 334 (584)
|||.+.|+.. +|..++..|...+ +.|+|+|=+.|....++ .+.++++.+.. ..+.++.+..-
T Consensus 7 RDG~q~~~~~-----f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~ 79 (266)
T cd07944 7 RDGGYVNNWD-----FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDS--KGNTKIAVMVD 79 (266)
T ss_pred ccCccccCcc-----CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhh--ccCCEEEEEEC
Confidence 4555566553 3667777776665 57999998888655321 34444444211 12577777776
Q ss_pred CHHHHhcHHHHHHh----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHH
Q 007936 335 SIDSLKNLEEIILA----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADV 410 (584)
Q Consensus 335 t~~av~NldeIl~~----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv 410 (584)
.... ++++|... .|.|-|+ ++...+ ...+.+++.++++|..|.+. + ....+-+..++.++
T Consensus 80 ~~~~--~~~~l~~a~~~gv~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~--~----~~a~~~~~~~~~~~ 143 (266)
T cd07944 80 YGND--DIDLLEPASGSVVDMIRVA-------FHKHEF-DEALPLIKAIKEKGYEVFFN--L----MAISGYSDEELLEL 143 (266)
T ss_pred CCCC--CHHHHHHHhcCCcCEEEEe-------cccccH-HHHHHHHHHHHHCCCeEEEE--E----EeecCCCHHHHHHH
Confidence 6542 34444433 4676664 344444 44467789999999887765 2 22233566777777
Q ss_pred HH-HHHcccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 411 SE-AVRQRADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 411 ~n-av~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
+. +...|+|.+.|. +|.=..+|.+.-+.++.+....
T Consensus 144 ~~~~~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 144 LELVNEIKPDVFYIV-DSFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred HHHHHhCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHhc
Confidence 75 455799999997 8888899999888888876443
No 55
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=92.97 E-value=2 Score=43.07 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=46.0
Q ss_pred hHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEE----eecCHH-HHhcHHHHHHh-CCEEEEeCCccccc
Q 007936 289 IDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIA----KIESID-SLKNLEEIILA-SDGAMVARGDLGAQ 362 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiA----KIEt~~-av~NldeIl~~-sDGImIaRGDLg~e 362 (584)
.+.+.+.|+|||.++|..+.+.++++.+.+ .+++++ ++.|.+ .++|+.+.++. ++|+.+||.=+..+
T Consensus 149 ~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~-------~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~ 221 (235)
T cd00958 149 ARIGAELGADIVKTKYTGDAESFKEVVEGC-------PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRP 221 (235)
T ss_pred HHHHHHHCCCEEEecCCCCHHHHHHHHhcC-------CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCC
Confidence 455889999999999877555555554433 234433 333433 67889999988 99999998766444
No 56
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=92.84 E-value=2.2 Score=41.50 Aligned_cols=133 Identities=16% Similarity=0.097 Sum_probs=76.8
Q ss_pred hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCC
Q 007936 288 DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQ 367 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~ 367 (584)
.++.+.+.|+|+|.++--.+.+.. +..+.++ .. ++.+..-+......+.+.++...+|.++++.-+-|..= +.
T Consensus 72 ~~~~~~~~g~dgv~vh~~~~~~~~-~~~~~~~--~~--~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg--~~ 144 (211)
T cd00429 72 YIEAFAKAGADIITFHAEATDHLH-RTIQLIK--EL--GMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGG--QK 144 (211)
T ss_pred HHHHHHHcCCCEEEECccchhhHH-HHHHHHH--HC--CCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCC--cc
Confidence 467778999999999887764433 3344442 22 24444444322235567777777898887654333211 11
Q ss_pred hH-HHHHHHHHHHHH-----cCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHH
Q 007936 368 VP-SAQQKIVQLCRQ-----LNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVL 440 (584)
Q Consensus 368 V~-~~Qk~II~~c~~-----~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m 440 (584)
.+ ...+.+-+.++. ...|++++--+ . ..++..++..|+|++...+.-..-..|.++++.+
T Consensus 145 ~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI--------~-----~env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 145 FIPEVLEKIRKLRELIPENNLNLLIEVDGGI--------N-----LETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCeEEEEECCC--------C-----HHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 11 122222222222 24788776311 1 1456788889999999987766667787777643
No 57
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=92.55 E-value=2.3 Score=45.09 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=70.6
Q ss_pred CHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccC
Q 007936 285 DWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQI 363 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei 363 (584)
+.+.++..++.++++|.++|-...+.+.++++ ..+++++.+=|.+-. ....+. +|+|.+--.+-|-..
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~--------~g~~v~~~v~s~~~a---~~a~~~GaD~Ivv~g~eagGh~ 144 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRLKE--------NGVKVIPVVASVALA---KRMEKAGADAVIAEGMESGGHI 144 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHH--------cCCEEEEEcCCHHHH---HHHHHcCCCEEEEECcccCCCC
Confidence 34567788999999999998655444444432 137899988665433 333333 899987322333333
Q ss_pred CCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 364 PLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 364 ~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+...-...-+++. +..++|||.+--+- .-.|+..++..|+|++++.
T Consensus 145 g~~~~~~ll~~v~---~~~~iPviaaGGI~------------~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 145 GELTTMALVPQVV---DAVSIPVIAAGGIA------------DGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred CCCcHHHHHHHHH---HHhCCCEEEECCCC------------CHHHHHHHHHcCCCEeecc
Confidence 3221222333333 34579999885433 2456788888999999986
No 58
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=92.52 E-value=0.65 Score=54.91 Aligned_cols=114 Identities=20% Similarity=0.111 Sum_probs=89.5
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh-hcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccc------------cCCC
Q 007936 299 FIAISFVKSAEVINHLKSYIAA-RSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGA------------QIPL 365 (584)
Q Consensus 299 ~I~lSfV~saedV~~lr~~l~~-~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~------------ei~~ 365 (584)
.+.+||+++..+...+. .... ...+.+.++..+||.+.++-..|||++..|++=+|.+||.- +...
T Consensus 597 ~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~~ 675 (740)
T COG0574 597 EIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDERD 675 (740)
T ss_pred EEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccccc
Confidence 58899999999998888 4431 11122388999999999999999999999999999999742 2223
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 366 EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 366 e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+.|..+-+..+..|+..++.+.++.|.-+- |.-| .-++..|.|+|.++
T Consensus 676 ~~v~~li~~a~~~~~~~~~~~~icG~~~~~------p~~a-----~~~~e~Gi~~Vs~n 723 (740)
T COG0574 676 PAVLKLIIIAIKAADSGGLLVGICGQAPSD------PHGA-----IFLVELGIDSVSLN 723 (740)
T ss_pred ccHHHHHHHHHhcccccCcEEEEeccCCCC------cHHH-----HHHHHcCCCeEecC
Confidence 578888899999999999999999874321 3333 55889999999966
No 59
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.46 E-value=2.2 Score=42.54 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=67.5
Q ss_pred CHhhhHHhHhcCCCEEEEc--CCCCH--HHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeC
Q 007936 285 DWLDIDFGITEGVDFIAIS--FVKSA--EVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVAR 356 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lS--fV~sa--edV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaR 356 (584)
+.+.++.+.+.|+|+|.+- ...++ +++.++.+.+++ . ..+.+++-.-| .+++..+ +|.+.+..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~--~-~~i~vi~~v~t------~ee~~~a~~~G~d~i~~~~ 147 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKE--Y-PGQLLMADCST------LEEGLAAQKLGFDFIGTTL 147 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--C-CCCeEEEeCCC------HHHHHHHHHcCCCEEEcCC
Confidence 4567888999999977653 33233 666777777742 1 35677775544 4444333 68887755
Q ss_pred CcccccC--CCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC
Q 007936 357 GDLGAQI--PLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG 425 (584)
Q Consensus 357 GDLg~ei--~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ 425 (584)
+++...- ....-...-+++. ...++|++.+.. .-|. .|+..++..|+|++++..
T Consensus 148 ~g~t~~~~~~~~~~~~~i~~i~---~~~~iPvia~GG---------I~t~---~~~~~~l~~GadgV~iGs 203 (221)
T PRK01130 148 SGYTEETKKPEEPDFALLKELL---KAVGCPVIAEGR---------INTP---EQAKKALELGAHAVVVGG 203 (221)
T ss_pred ceeecCCCCCCCcCHHHHHHHH---HhCCCCEEEECC---------CCCH---HHHHHHHHCCCCEEEEch
Confidence 4442211 1111122222222 233899997632 2233 456677889999999983
No 60
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=92.45 E-value=0.52 Score=57.19 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=96.7
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhhc---CCCCceEEEeecCHHHHhcHHHHHHh--C-----------C----EEEEeCC
Q 007936 298 DFIAISFVKSAEVINHLKSYIAARS---RDSDIAVIAKIESIDSLKNLEEIILA--S-----------D----GAMVARG 357 (584)
Q Consensus 298 D~I~lSfV~saedV~~lr~~l~~~~---~~~~i~IiAKIEt~~av~NldeIl~~--s-----------D----GImIaRG 357 (584)
...++|+.+++.||.++.-+++..+ ....+.|+.-.||.+.++|.++|++. . + -||+|+.
T Consensus 547 g~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYS 626 (974)
T PTZ00398 547 GAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYS 626 (974)
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEecc
Confidence 3479999999999999999886421 12357899999999999999999976 1 1 7999999
Q ss_pred cccccCCCC----ChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCCh
Q 007936 358 DLGAQIPLE----QVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFP 433 (584)
Q Consensus 358 DLg~ei~~e----~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yP 433 (584)
|=+.+-|.- .+..+|+++.+.|+++|+.+.+.=-.=.|+-...-|+..-+-.--.....|.=-+-.-||+-.-+|+
T Consensus 627 DS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~~aIlsqp~~~~~g~ir~TeQGE~i~~ky~ 706 (974)
T PTZ00398 627 DSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQHLAILSQPPNTIKSYLRITIQGETITQNFG 706 (974)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChHHHHhcCCCccccCeeEEeeechhhHHhcC
Confidence 999888873 7889999999999999999876533333444444554432111111112233334455666555665
Q ss_pred HHH
Q 007936 434 DKA 436 (584)
Q Consensus 434 vea 436 (584)
...
T Consensus 707 ~~~ 709 (974)
T PTZ00398 707 LKG 709 (974)
T ss_pred ChH
Confidence 443
No 61
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.03 E-value=4.8 Score=41.08 Aligned_cols=115 Identities=12% Similarity=0.139 Sum_probs=75.4
Q ss_pred hhHHhHhcCCCEEEEcC--CCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEE---eCCccccc
Q 007936 288 DIDFGITEGVDFIAISF--VKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMV---ARGDLGAQ 362 (584)
Q Consensus 288 dI~~al~~gvD~I~lSf--V~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImI---aRGDLg~e 362 (584)
.++.+.+.|+|+|.++- +++.++..++.+.++ +.|-+..+...=+| -.+.++.+++.+|++++ -+|..+
T Consensus 93 ~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~--~~Gl~~~~~v~p~T--~~e~l~~~~~~~~~~l~msv~~~~g~-- 166 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIK--NKGLKPVFFTSPKF--PDLLIHRLSKLSPLFIYYGLRPATGV-- 166 (244)
T ss_pred HHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHH--HcCCCEEEEECCCC--CHHHHHHHHHhCCCEEEEEeCCCCCC--
Confidence 36778899999999985 576788888888884 44545555555555 35678999999998873 334422
Q ss_pred CCCCChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 363 IPLEQVPSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 363 i~~e~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+++.-....++..++. .+|+.+- ...=+. .++..+...|+|+++..
T Consensus 167 ----~~~~~~~~~i~~lr~~~~~~~i~v~---------gGI~~~---e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 167 ----PLPVSVERNIKRVRNLVGNKYLVVG---------FGLDSP---EDARDALSAGADGVVVG 214 (244)
T ss_pred ----CchHHHHHHHHHHHHhcCCCCEEEe---------CCcCCH---HHHHHHHHcCCCEEEEC
Confidence 2334444455555554 3676643 222233 35666778999998865
No 62
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.87 E-value=3.3 Score=41.27 Aligned_cols=116 Identities=22% Similarity=0.307 Sum_probs=69.5
Q ss_pred cCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCccccc
Q 007936 284 KDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQ 362 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~e 362 (584)
...+.++.+.+.|+|+|.++.-.+.+.++.+++ ..+.++.++.+.+- +..+.+. +|+|.+....-+-.
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~--------~~i~~i~~v~~~~~---~~~~~~~gad~i~~~~~~~~G~ 136 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPPAEVVERLKA--------AGIKVIPTVTSVEE---ARKAEAAGADALVAQGAEAGGH 136 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH--------cCCEEEEeCCCHHH---HHHHHHcCCCEEEEeCcCCCCC
Confidence 345667888899999999998765544444432 24788888877533 3444433 79887633221111
Q ss_pred CCCCChHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 363 IPLEQVPSAQQKIVQLCRQ-LNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 363 i~~e~V~~~Qk~II~~c~~-~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
..... ......++.+++ .++|++.+- ..-+ ..|+..++..|+|++++.
T Consensus 137 ~~~~~--~~~~~~i~~i~~~~~~Pvi~~G---------GI~~---~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 137 RGTFD--IGTFALVPEVRDAVDIPVIAAG---------GIAD---GRGIAAALALGADGVQMG 185 (236)
T ss_pred CCccc--cCHHHHHHHHHHHhCCCEEEEC---------CCCC---HHHHHHHHHcCCcEEEEc
Confidence 11111 112334444443 379999863 2222 356778888999999997
No 63
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.57 E-value=2.5 Score=45.57 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=76.6
Q ss_pred CccCHhhhHHhHh--cCCCEEEEc--CCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCC
Q 007936 282 SPKDWLDIDFGIT--EGVDFIAIS--FVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARG 357 (584)
Q Consensus 282 t~kD~~dI~~al~--~gvD~I~lS--fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRG 357 (584)
.+.|.+-++..++ .|+|+|++- .=.|...++.++. ++. ....-..|---+-|+++.++|-+ .=+|++-||=|
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~-ik~-~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIG 181 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAK-ARE-AWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIG 181 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHH-hCCCCcEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 4566666666666 499998864 3344444444443 321 22222345556999999877544 34899886644
Q ss_pred cccccC-------CCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 358 DLGAQI-------PLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 358 DLg~ei-------~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
-=++-. |.+ -..+-....+.|++.|+|+|---- . ---.|++.|+..|+|++||.
T Consensus 182 pGSiCtTr~vtGvG~P-QltAV~~~a~~a~~~gvpiIADGG---------i---~~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 182 PGSVCTTRVKTGVGYP-QLSAVIECADAAHGLGGQIVSDGG---------C---TVPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred CCccccCccccccChh-HHHHHHHHHHHHHHcCCCEEecCC---------c---ccccHHHHHHHcCCCEEEeC
Confidence 211111 112 223334566677888999984321 1 12489999999999999994
No 64
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.53 E-value=4.5 Score=43.16 Aligned_cols=141 Identities=16% Similarity=0.219 Sum_probs=78.5
Q ss_pred HHhHhcCCCEEEEcCCC--C-----H----HHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-----CCEEE
Q 007936 290 DFGITEGVDFIAISFVK--S-----A----EVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-----SDGAM 353 (584)
Q Consensus 290 ~~al~~gvD~I~lSfV~--s-----a----edV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-----sDGIm 353 (584)
+...+.|+|+|-+.+-. . . +.+.++.+.++ + ..++.|++|+ ++ .+.++.++++. +|||.
T Consensus 121 ~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~--~-~~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~dgI~ 195 (334)
T PRK07565 121 RQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVK--S-AVSIPVAVKL-SP-YFSNLANMAKRLDAAGADGLV 195 (334)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHH--h-ccCCcEEEEe-CC-CchhHHHHHHHHHHcCCCeEE
Confidence 34456789998874311 1 1 11222333332 1 2358999997 33 23345555543 68886
Q ss_pred EeCCcccccCCC--------------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccc
Q 007936 354 VARGDLGAQIPL--------------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRAD 419 (584)
Q Consensus 354 IaRGDLg~ei~~--------------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D 419 (584)
+.-.=.+..+.+ .-.+.+.+.+-+..+..+.|+|-..- .- -..|+..++..|||
T Consensus 196 ~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GG---------I~---s~~Da~e~l~aGA~ 263 (334)
T PRK07565 196 LFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTG---------VH---DAEDVIKMLLAGAD 263 (334)
T ss_pred EECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECC---------CC---CHHHHHHHHHcCCC
Confidence 632212222211 12344555555555555788876533 22 34578889999999
Q ss_pred eEeecCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 420 ALMLSGESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 420 ~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
++++...--..- | +++.+|+++.+.|+.
T Consensus 264 ~V~v~t~~~~~g-~----~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 264 VVMIASALLRHG-P----DYIGTILRGLEDWME 291 (334)
T ss_pred ceeeehHHhhhC-c----HHHHHHHHHHHHHHH
Confidence 999984433311 3 577778888887764
No 65
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=91.52 E-value=2 Score=45.99 Aligned_cols=127 Identities=20% Similarity=0.302 Sum_probs=77.1
Q ss_pred CCCccCHhhhHHhHhcC--CCEEEEcC--CCCHHHHHHHHHHHHhhcCCCCceEEEe-ecCHHHHhcHHHHHHhCCEEEE
Q 007936 280 TISPKDWLDIDFGITEG--VDFIAISF--VKSAEVINHLKSYIAARSRDSDIAVIAK-IESIDSLKNLEEIILASDGAMV 354 (584)
Q Consensus 280 ~lt~kD~~dI~~al~~g--vD~I~lSf--V~saedV~~lr~~l~~~~~~~~i~IiAK-IEt~~av~NldeIl~~sDGImI 354 (584)
..+++|.+.+..-++.| +|+|++-- =.|...++.++.+-+ .. ..+.||++ +-|.+....+.+ .=+|+|.|
T Consensus 90 G~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~--~~-p~~~vi~GnV~t~e~a~~l~~--aGad~I~V 164 (321)
T TIGR01306 90 GVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT--HL-PDSFVIAGNVGTPEAVRELEN--AGADATKV 164 (321)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH--hC-CCCEEEEecCCCHHHHHHHHH--cCcCEEEE
Confidence 34778888888888988 79988754 233444444444331 11 34668888 998888777654 23899998
Q ss_pred eCCcccc-----cCCCCChHHHHHHHHHHH-HHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 355 ARGDLGA-----QIPLEQVPSAQQKIVQLC-RQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 355 aRGDLg~-----ei~~e~V~~~Qk~II~~c-~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+=|-=+. +.+. .++..|=..+..| ....+|||.-.-+- --.|++.|+..|||++|+.
T Consensus 165 ~~G~G~~~~tr~~~g~-g~~~~~l~ai~ev~~a~~~pVIadGGIr------------~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 165 GIGPGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGGIR------------THGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCCCCccccceeeecc-CCCchHHHHHHHHHHhcCCeEEEECCcC------------cHHHHHHHHHcCCCEEeec
Confidence 7321111 1111 1122222333433 44478877643222 2379999999999999996
No 66
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.35 E-value=2.2 Score=45.84 Aligned_cols=127 Identities=19% Similarity=0.311 Sum_probs=74.8
Q ss_pred CccCHhhhHHhHhcCC--CEEEEcCCC-CHHHHHHHHHHHHhhcCCCCceEEEe-ecCHHHHhcHHHHHHhCCEEEEeCC
Q 007936 282 SPKDWLDIDFGITEGV--DFIAISFVK-SAEVINHLKSYIAARSRDSDIAVIAK-IESIDSLKNLEEIILASDGAMVARG 357 (584)
Q Consensus 282 t~kD~~dI~~al~~gv--D~I~lSfV~-saedV~~lr~~l~~~~~~~~i~IiAK-IEt~~av~NldeIl~~sDGImIaRG 357 (584)
++++.+-+..-++.|+ |+|++--.. .-+.+.++.+.++.. -.+..||++ +-|.+...++.+ .=+|++.+|=|
T Consensus 95 ~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~--~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~ 170 (326)
T PRK05458 95 KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH--LPETFVIAGNVGTPEAVRELEN--AGADATKVGIG 170 (326)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh--CCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCC
Confidence 5566777777788855 999982222 123344434444321 134789997 999888877665 23899998722
Q ss_pred cccc--c---CCCCChHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC
Q 007936 358 DLGA--Q---IPLEQVPSAQQKIVQLCRQ-LNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG 425 (584)
Q Consensus 358 DLg~--e---i~~e~V~~~Qk~II~~c~~-~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ 425 (584)
.=.. + .+. ..+.+|-..+..|.+ ..+|+|-..- .-+ -.|+..|+..|||++|+.+
T Consensus 171 ~G~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIAdGG---------I~~---~~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 171 PGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGG---------IRT---HGDIAKSIRFGATMVMIGS 231 (326)
T ss_pred CCcccccccccCC-CCCccHHHHHHHHHHHcCCCEEEeCC---------CCC---HHHHHHHHHhCCCEEEech
Confidence 2111 1 011 123334333444433 4788775432 222 3688999999999999963
No 67
>PRK00915 2-isopropylmalate synthase; Validated
Probab=91.22 E-value=11 Score=42.98 Aligned_cols=165 Identities=16% Similarity=0.222 Sum_probs=106.2
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHh-HhcCCCEEEEcC-CCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFG-ITEGVDFIAISF-VKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLE 343 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~a-l~~gvD~I~lSf-V~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~Nld 343 (584)
|||.+.|+. .+|..++..|... .+.|+|.|=+-| .-++.|.+.++.+.+. ..+..+.+-.-.. .+++|
T Consensus 13 RDG~Q~~g~-----~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~---~~~~~i~a~~r~~--~~did 82 (513)
T PRK00915 13 RDGEQSPGA-----SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIART---VKNSTVCGLARAV--KKDID 82 (513)
T ss_pred CcCCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhh---CCCCEEEEEccCC--HHHHH
Confidence 566656654 3466777666555 468999998876 5678888888777632 2345666655332 23344
Q ss_pred HHHHh---C--C--EEEEeCCcccc----cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHH
Q 007936 344 EIILA---S--D--GAMVARGDLGA----QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE 412 (584)
Q Consensus 344 eIl~~---s--D--GImIaRGDLg~----ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~n 412 (584)
..+++ + + .++++-.|+-. -...+++.......++.|+++|.-|.+..+ ...+-+...+.+++.
T Consensus 83 ~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~ 156 (513)
T PRK00915 83 AAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVE 156 (513)
T ss_pred HHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHH
Confidence 44422 2 2 35555555522 233456666778899999999998876532 222333444566666
Q ss_pred H-HHcccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 413 A-VRQRADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 413 a-v~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
+ ...|+|.+.|. +|.=+..|.+.-+.++.+.+..
T Consensus 157 ~~~~~Ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 157 AAIDAGATTINIP-DTVGYTTPEEFGELIKTLRERV 191 (513)
T ss_pred HHHHcCCCEEEEc-cCCCCCCHHHHHHHHHHHHHhC
Confidence 4 55699999997 8888899999998888886543
No 68
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=91.22 E-value=2.1 Score=47.25 Aligned_cols=193 Identities=20% Similarity=0.158 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCCCCceEeeCCCEEEEeecccCCCCCCCEEEe-cccchhcccCCCCE
Q 007936 148 RVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSGPPSARAEDGEIWTFTVRAFDSPRPERTITV-NYDGFAEDVKVGDE 226 (584)
Q Consensus 148 ~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v-~~~~~~~~v~vGd~ 226 (584)
++...|+.+-+..-..+.+-.++.+-+. ..+-.++|+..+...... ..+|= ++..+...++.|++
T Consensus 10 el~~~ik~~le~~~~~v~v~gEis~~~~-------------~~sGH~Yf~Lkd~~a~i~-~~~~~~~~~~~~~~~~~G~~ 75 (438)
T PRK00286 10 ELNRYVKSLLERDLGQVWVRGEISNFTR-------------HSSGHWYFTLKDEIAQIR-CVMFKGSARRLKFKPEEGMK 75 (438)
T ss_pred HHHHHHHHHHHhhCCcEEEEEEeCCCee-------------CCCCeEEEEEEcCCcEEE-EEEEcChhhcCCCCCCCCCE
Confidence 4455555543332234555444444333 222356666653211111 22332 24455566899999
Q ss_pred EEEe--------CCeeEEEEEEEeCCeEEEEEEcCcee----------CCCceeeeccCCcccCCccccCCCCCccCHhh
Q 007936 227 LLVD--------GGMVRFEVIEKIGPDVKCRCTDPGLL----------LPRANLTFWRDGSLVRERNAMLPTISPKDWLD 288 (584)
Q Consensus 227 I~id--------DG~i~l~V~~~~~~~i~c~v~~~G~l----------~s~Kgvnf~~~~~~lp~~~~~lp~lt~kD~~d 288 (584)
|++. .|..+|.|.+++... -|.| ...+|+. =++...++|.++.
T Consensus 76 v~v~g~~~~y~~~g~~ql~v~~i~~~g-------~G~l~~~~~~lk~~L~~eGlf-------d~~~k~~lP~~p~----- 136 (438)
T PRK00286 76 VLVRGKVSLYEPRGDYQLIVEEIEPAG-------IGALAAAFEQLKEKLAAEGLF-------DPERKKPLPFFPK----- 136 (438)
T ss_pred EEEEEEEEEECCCCCEEEEEEEeeeCC-------ccHHHHHHHHHHHHHHHCCCC-------ChhhcCCCCCCCC-----
Confidence 8875 466777776665432 1322 1123443 4556667777653
Q ss_pred hHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh--------CCEEEEeCCccc
Q 007936 289 IDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA--------SDGAMVARGDLG 360 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~--------sDGImIaRGDLg 360 (584)
-|++=--.+++-+..+.+.+..+. ..+.+.--==+.+|-....+|+++ .|.|+|+||-=+
T Consensus 137 ----------~I~viTs~~gAa~~D~~~~~~~r~--p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 137 ----------RIGVITSPTGAAIRDILTVLRRRF--PLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred ----------EEEEEeCCccHHHHHHHHHHHhcC--CCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 244444467777777777775332 212222111233444444444433 399999999321
Q ss_pred ccCCCCC-hHHHHHHHHHHHHHcCCCeEEe
Q 007936 361 AQIPLEQ-VPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 361 ~ei~~e~-V~~~Qk~II~~c~~~gKPvivA 389 (584)
.|+ ++.-...++++..+...|||.|
T Consensus 205 ----~eDL~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 205 ----LEDLWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred ----HHHhhccCcHHHHHHHHcCCCCEEEe
Confidence 111 2333456777888889999987
No 69
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.13 E-value=6.6 Score=40.83 Aligned_cols=139 Identities=19% Similarity=0.285 Sum_probs=79.5
Q ss_pred HHhHhcCCCEEEEc------------CCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-----CCEE
Q 007936 290 DFGITEGVDFIAIS------------FVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-----SDGA 352 (584)
Q Consensus 290 ~~al~~gvD~I~lS------------fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-----sDGI 352 (584)
+.+.+.|+|+|=+. +-++++.+.++.+.++.. -++.|++|| ++ ..++..+|++. +|+|
T Consensus 109 ~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~---~~~Pv~vKl-~~-~~~~~~~~a~~~~~~G~d~i 183 (296)
T cd04740 109 EKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA---TDVPVIVKL-TP-NVTDIVEIARAAEEAGADGL 183 (296)
T ss_pred HHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc---cCCCEEEEe-CC-CchhHHHHHHHHHHcCCCEE
Confidence 44556789998663 346677777777777422 258899999 22 12345555542 6887
Q ss_pred EEe-----CC-cccc-----------cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHH
Q 007936 353 MVA-----RG-DLGA-----------QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR 415 (584)
Q Consensus 353 mIa-----RG-DLg~-----------ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~ 415 (584)
.+- +. |+.. --|....+...+.+-+..+..+.|+|....+- ...|+..++.
T Consensus 184 ~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~------------~~~da~~~l~ 251 (296)
T cd04740 184 TLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA------------SGEDALEFLM 251 (296)
T ss_pred EEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC------------CHHHHHHHHH
Confidence 652 11 2210 01111223334444444555689988764322 2357788889
Q ss_pred cccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhh
Q 007936 416 QRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWW 451 (584)
Q Consensus 416 ~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 451 (584)
.|+|++++..---. -|- +.+++.+..++|+
T Consensus 252 ~GAd~V~igra~l~--~p~----~~~~i~~~l~~~~ 281 (296)
T cd04740 252 AGASAVQVGTANFV--DPE----AFKEIIEGLEAYL 281 (296)
T ss_pred cCCCEEEEchhhhc--ChH----HHHHHHHHHHHHH
Confidence 99999999844333 342 4455555556554
No 70
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.82 E-value=9.2 Score=38.59 Aligned_cols=169 Identities=15% Similarity=0.111 Sum_probs=101.4
Q ss_pred cCCcccCCccccCCCCCccCHhh-hHHhHhcCCCEEEEcCCCCH------HHHHHHHHHHHhhcCCCCceEEEeecCHHH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLD-IDFGITEGVDFIAISFVKSA------EVINHLKSYIAARSRDSDIAVIAKIESIDS 338 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~d-I~~al~~gvD~I~lSfV~sa------edV~~lr~~l~~~~~~~~i~IiAKIEt~~a 338 (584)
|||-+.++.. +|..++.. ++...+.|+|+|-+.+-... ++..++.+.+.. .+.+..+.+..=+ +
T Consensus 6 RDG~q~~~~~-----~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~--~~~~~~~~~l~~~--~ 76 (265)
T cd03174 6 RDGLQSEGAT-----FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRK--LVPNVKLQALVRN--R 76 (265)
T ss_pred CCcccCCCCC-----CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHh--ccCCcEEEEEccC--c
Confidence 5555555433 34445544 45556789999999988877 666666555632 2324555555533 2
Q ss_pred HhcHHHHHHh-CCEEEEeC--Ccccc----cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHH
Q 007936 339 LKNLEEIILA-SDGAMVAR--GDLGA----QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVS 411 (584)
Q Consensus 339 v~NldeIl~~-sDGImIaR--GDLg~----ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~ 411 (584)
.+.++...+. .|.|.+.= .|.-. ..+.+....--...++.++++|.++.+.+.. ...+.-+..++.+++
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~----~~~~~~~~~~l~~~~ 152 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED----AFGCKTDPEYVLEVA 152 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe----ecCCCCCHHHHHHHH
Confidence 4445555555 46665531 01000 0122234555567888999999998887421 111124556666666
Q ss_pred H-HHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHh
Q 007936 412 E-AVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIE 448 (584)
Q Consensus 412 n-av~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE 448 (584)
. +...|+|.+.|. +|.=..+|.+.-+.++.+.....
T Consensus 153 ~~~~~~g~~~i~l~-Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 153 KALEEAGADEISLK-DTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred HHHHHcCCCEEEec-hhcCCcCHHHHHHHHHHHHHhCC
Confidence 6 667899999987 66666889988888777765443
No 71
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.75 E-value=3 Score=46.04 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=76.7
Q ss_pred CccCHhhhHHhHhcCCCEEEE--cCCCCHHHHHHHHHHHHhhcCCCCceE-EEeecCHHHHhcHHHHHHhCCEEEEeCCc
Q 007936 282 SPKDWLDIDFGITEGVDFIAI--SFVKSAEVINHLKSYIAARSRDSDIAV-IAKIESIDSLKNLEEIILASDGAMVARGD 358 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~l--SfV~saedV~~lr~~l~~~~~~~~i~I-iAKIEt~~av~NldeIl~~sDGImIaRGD 358 (584)
++.+.+.++..++.|+|+|++ +.=. .+.+.++.+.++.+ . .+..| +.-|-|.+...++.+. =+|+|.+|=|-
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~-~-p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~ 225 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTK-Y-PNLDLIAGNIVTKEAALDLISV--GADCLKVGIGP 225 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhh-C-CCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCC
Confidence 344567788889999999994 3322 34454544555322 1 23445 4478888888777653 48999987433
Q ss_pred ccc-------cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 359 LGA-------QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 359 Lg~-------ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
=+. ..+.+.+ .+-..+.+.|++.+.|||...- .- .-.|++.|+..|||++|+.
T Consensus 226 Gs~c~tr~~~g~g~p~l-tai~~v~~~~~~~~vpVIAdGG---------I~---~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 226 GSICTTRIVAGVGVPQI-TAICDVYEVCKNTNICIIADGG---------IR---FSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred CcCCcceeecCCCCChH-HHHHHHHHHHhhcCCeEEEeCC---------CC---CHHHHHHHHHcCCCEEEEc
Confidence 111 1122222 1223344566677899886532 22 2368999999999999984
No 72
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=90.43 E-value=6.9 Score=40.97 Aligned_cols=168 Identities=15% Similarity=0.099 Sum_probs=105.3
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHhH-hc-CCCEEEEc-CCCCHHHHHHHHHHHHhhc-CC--CCceEEEeecCHHHH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFGI-TE-GVDFIAIS-FVKSAEVINHLKSYIAARS-RD--SDIAVIAKIESIDSL 339 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~al-~~-gvD~I~lS-fV~saedV~~lr~~l~~~~-~~--~~i~IiAKIEt~~av 339 (584)
|||.+-|+. .+|.+++..|...+ +. |+|.|=+. |.-+++|.+.+++..+... .+ ....+++.+....+
T Consensus 6 RDG~Q~~~~-----~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~- 79 (280)
T cd07945 6 RDGEQTSGV-----SFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKS- 79 (280)
T ss_pred CCcCcCCCC-----ccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHH-
Confidence 566656555 34667788887774 55 99999875 5589978777777764211 00 13567776655443
Q ss_pred hcHHHHHHh-CCEEEEe--CCccccc----CCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCC-CCChhhHHHHH
Q 007936 340 KNLEEIILA-SDGAMVA--RGDLGAQ----IPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYP-TPTRAEVADVS 411 (584)
Q Consensus 340 ~NldeIl~~-sDGImIa--RGDLg~e----i~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p-~PTrAEv~Dv~ 411 (584)
++..++. .|.|-+. =.|.-.. ...++.....+.+++.|+++|..|.+.-. +..+| +-+...+.+++
T Consensus 80 --~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~----d~~~~~r~~~~~~~~~~ 153 (280)
T cd07945 80 --VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLE----DWSNGMRDSPDYVFQLV 153 (280)
T ss_pred --HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEE----eCCCCCcCCHHHHHHHH
Confidence 4444444 5654443 2221111 22356666677889999999998777521 12222 22344556655
Q ss_pred H-HHHcccceEeecCCCCCCCChHHHHHHHHHHHHH
Q 007936 412 E-AVRQRADALMLSGESAMGQFPDKALTVLRSVSLR 446 (584)
Q Consensus 412 n-av~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~ 446 (584)
. +...|+|.+.|. +|.=.-.|.+.-++++.+...
T Consensus 154 ~~~~~~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 154 DFLSDLPIKRIMLP-DTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred HHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHHHhh
Confidence 5 566799999997 787778899998888887543
No 73
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=90.30 E-value=9 Score=41.55 Aligned_cols=164 Identities=14% Similarity=0.139 Sum_probs=103.6
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHh-HhcCCCEEEEc-CCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFG-ITEGVDFIAIS-FVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLE 343 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~a-l~~gvD~I~lS-fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~Nld 343 (584)
|||.+.++. .+|..++..|... .+.|+|.|=+. ++.+.++.+.++.+.+ .+.+..+.+-+-. -.+.++
T Consensus 9 RDG~Q~~~~-----~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~---~~~~~~v~~~~r~--~~~di~ 78 (363)
T TIGR02090 9 RDGEQTPGV-----SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ---EGLNAEICSLARA--LKKDID 78 (363)
T ss_pred CCcCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh---cCCCcEEEEEccc--CHHHHH
Confidence 556556553 3466677666554 46899999775 4667778777777663 2334666665532 122344
Q ss_pred HHHHh-CCEEEE--eCCcccc----cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHH-HHH
Q 007936 344 EIILA-SDGAMV--ARGDLGA----QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE-AVR 415 (584)
Q Consensus 344 eIl~~-sDGImI--aRGDLg~----ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av~ 415 (584)
..++. .|.|.+ +-.|+-. -...+++.......++.|+++|..|.+.- ....+-+...+.+++. +..
T Consensus 79 ~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~------eda~r~~~~~l~~~~~~~~~ 152 (363)
T TIGR02090 79 KAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA------EDATRTDIDFLIKVFKRAEE 152 (363)
T ss_pred HHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE------eecCCCCHHHHHHHHHHHHh
Confidence 44443 565444 3333311 12334555666788999999999887752 2334455666666665 466
Q ss_pred cccceEeecCCCCCCCChHHHHHHHHHHHHH
Q 007936 416 QRADALMLSGESAMGQFPDKALTVLRSVSLR 446 (584)
Q Consensus 416 ~G~D~imLs~ETa~G~yPveaV~~m~~I~~~ 446 (584)
.|+|.+.|. +|.=..+|.+.-+.++.+...
T Consensus 153 ~g~~~i~l~-DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 153 AGADRINIA-DTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CCCCEEEEe-CCCCccCHHHHHHHHHHHhcc
Confidence 799999997 788788999988888887644
No 74
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=90.14 E-value=6.2 Score=37.48 Aligned_cols=119 Identities=20% Similarity=0.150 Sum_probs=71.1
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCC-CceEEEeecC-------HHHHhcHHHHHHh-CCEEEEeCC
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDS-DIAVIAKIES-------IDSLKNLEEIILA-SDGAMVARG 357 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~-~i~IiAKIEt-------~~av~NldeIl~~-sDGImIaRG 357 (584)
+.+++.++.|+|+|.+.- +-++.+++.. +. ++.+++++=. .+.++..++-.+. +|++++...
T Consensus 17 ~~~~~~~~~gv~gi~~~g----~~i~~~~~~~-----~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~ 87 (201)
T cd00945 17 KLCDEAIEYGFAAVCVNP----GYVRLAADAL-----AGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVIN 87 (201)
T ss_pred HHHHHHHHhCCcEEEECH----HHHHHHHHHh-----CCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEecc
Confidence 344678889999999986 4555555544 23 5889999954 4566667766666 899998532
Q ss_pred cccccCC--CCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCC--ChhhHHHHHH-HHHcccceEeec
Q 007936 358 DLGAQIP--LEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTP--TRAEVADVSE-AVRQRADALMLS 424 (584)
Q Consensus 358 DLg~ei~--~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~P--TrAEv~Dv~n-av~~G~D~imLs 424 (584)
- ..... .+.+...-+.+.+.| +.+.|+++-. .|.- +..++...+. +...|+|++=.+
T Consensus 88 ~-~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~--------~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 88 I-GSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVIL--------ETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred H-HHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEE--------ECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 1 11111 233444444555555 4699988742 1221 2334444433 345799998655
No 75
>PRK09389 (R)-citramalate synthase; Provisional
Probab=89.91 E-value=9.8 Score=43.03 Aligned_cols=163 Identities=16% Similarity=0.198 Sum_probs=104.8
Q ss_pred cCCcccCCccccCCCCCccCHhhhHH-hHhcCCCEEEEc-CCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDF-GITEGVDFIAIS-FVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLE 343 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~-al~~gvD~I~lS-fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~Nld 343 (584)
|||.+.|+.. +|..++..|.. -.+.|+|.|=+. ++.+..|.+.++.+.+. +.+..|.+..-.. .+.++
T Consensus 11 RDG~Q~~g~~-----~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~---~~~~~i~a~~r~~--~~di~ 80 (488)
T PRK09389 11 RDGEQTPGVS-----LTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDE---GLNAEICSFARAV--KVDID 80 (488)
T ss_pred CCcCCCCCCC-----cCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhc---CCCcEEEeecccC--HHHHH
Confidence 5666566553 35555655544 457899999774 46788888888877632 3346677766553 23355
Q ss_pred HHHHh-CCE--EEEeCCcccc----cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHH-HH
Q 007936 344 EIILA-SDG--AMVARGDLGA----QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEA-VR 415 (584)
Q Consensus 344 eIl~~-sDG--ImIaRGDLg~----ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~na-v~ 415 (584)
..++. .|. ++++-.|+-. ....+++...-...++.|+++|..|.+. +....+-+..-+.+++++ ..
T Consensus 81 ~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 81 AALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS------GEDASRADLDFLKELYKAGIE 154 (488)
T ss_pred HHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE------EeeCCCCCHHHHHHHHHHHHh
Confidence 55544 454 4444444422 1223455556667788999999888774 233445555556666664 45
Q ss_pred cccceEeecCCCCCCCChHHHHHHHHHHHH
Q 007936 416 QRADALMLSGESAMGQFPDKALTVLRSVSL 445 (584)
Q Consensus 416 ~G~D~imLs~ETa~G~yPveaV~~m~~I~~ 445 (584)
.|+|.+.|. +|.=...|.+.-+.++.+..
T Consensus 155 ~Ga~~i~l~-DTvG~~~P~~~~~lv~~l~~ 183 (488)
T PRK09389 155 AGADRICFC-DTVGILTPEKTYELFKRLSE 183 (488)
T ss_pred CCCCEEEEe-cCCCCcCHHHHHHHHHHHHh
Confidence 699999996 88888999999888777754
No 76
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.82 E-value=3 Score=46.98 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=82.5
Q ss_pred CCCccCHhhhHHhHhcCCCEEEEcCCCC-HHHHHHHHHHHHhhcCCCCceEEE-eecCHHHHhcHHHHHHhCCEEEEe--
Q 007936 280 TISPKDWLDIDFGITEGVDFIAISFVKS-AEVINHLKSYIAARSRDSDIAVIA-KIESIDSLKNLEEIILASDGAMVA-- 355 (584)
Q Consensus 280 ~lt~kD~~dI~~al~~gvD~I~lSfV~s-aedV~~lr~~l~~~~~~~~i~IiA-KIEt~~av~NldeIl~~sDGImIa-- 355 (584)
.+++.+.+.+..-++.|+|.|++--.+- -..+.++.+.++.+ -.+..||| -+-|.++..++.+ .=+|+|-||
T Consensus 223 ~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~--~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig 298 (479)
T PRK07807 223 GINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRAL--DPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVG 298 (479)
T ss_pred ccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHH--CCCCeEEeeccCCHHHHHHHHH--cCCCEEEECcc
Confidence 3456667777778899999988743222 23444444445322 23588999 9999999988876 348988754
Q ss_pred CCcccccCCCCC----hHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 356 RGDLGAQIPLEQ----VPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 356 RGDLg~ei~~e~----V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+|-...--..-. -..+-.++.+.|++.|+|||-.-. ..+. .|+..|+..|+|++|+.
T Consensus 299 ~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~gg---------i~~~---~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 299 PGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGG---------VRHP---RDVALALAAGASNVMIG 359 (479)
T ss_pred CCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCC---------CCCH---HHHHHHHHcCCCeeecc
Confidence 332222212211 223334555666677999996532 2222 78899999999999984
No 77
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=89.57 E-value=11 Score=37.08 Aligned_cols=139 Identities=16% Similarity=0.122 Sum_probs=76.1
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCC
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPL 365 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~ 365 (584)
.+.++.+.+.|+|+|.++.-.+.+.... .+.++ ..+ ..+..-+......+.+.++...+|.+.+..-+-|..-.
T Consensus 74 ~~~i~~~~~~g~d~v~vh~~~~~~~~~~-~~~~~--~~~--~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~- 147 (220)
T PRK05581 74 DRYVPDFAKAGADIITFHVEASEHIHRL-LQLIK--SAG--IKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQ- 147 (220)
T ss_pred HHHHHHHHHcCCCEEEEeeccchhHHHH-HHHHH--HcC--CEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcc-
Confidence 3345666799999999998776433344 34442 222 44444553223356677888889988776433322221
Q ss_pred CChHHHHHH---HHHHHHHcCCC--eEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHH
Q 007936 366 EQVPSAQQK---IVQLCRQLNKP--VIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVL 440 (584)
Q Consensus 366 e~V~~~Qk~---II~~c~~~gKP--vivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m 440 (584)
..-+...+. +-..+...+.| +.++-- -.| .++..+...|+|++...+.-..=..|.++++.+
T Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG--------I~~-----~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~ 214 (220)
T PRK05581 148 KFIPEVLEKIRELRKLIDERGLDILIEVDGG--------INA-----DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSL 214 (220)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCceEEEECC--------CCH-----HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHH
Confidence 111222222 33333333323 334321 112 245566668999999976654445788887776
Q ss_pred HHH
Q 007936 441 RSV 443 (584)
Q Consensus 441 ~~I 443 (584)
+++
T Consensus 215 ~~~ 217 (220)
T PRK05581 215 RAE 217 (220)
T ss_pred HHH
Confidence 654
No 78
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=89.41 E-value=3.7 Score=43.11 Aligned_cols=126 Identities=19% Similarity=0.285 Sum_probs=76.1
Q ss_pred cCHhhhHH-hHhcCCCEEEE----cCC-----------CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHH
Q 007936 284 KDWLDIDF-GITEGVDFIAI----SFV-----------KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIIL 347 (584)
Q Consensus 284 kD~~dI~~-al~~gvD~I~l----SfV-----------~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~ 347 (584)
.|+.+... ..+.|+|+|=+ |.+ ++++.+.++.+.++.. .++.|++||- + .+.++.++++
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~~~Pv~vKl~-~-~~~~~~~~a~ 187 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA---VKIPVIAKLT-P-NITDIREIAR 187 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh---cCCCeEEECC-C-CchhHHHHHH
Confidence 44444433 33458887665 332 5567777777777421 2589999994 2 3446666665
Q ss_pred h-----CCEEEEe-----CCcc-----------------cccCCCCChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhc
Q 007936 348 A-----SDGAMVA-----RGDL-----------------GAQIPLEQVPSAQQKIVQLCRQL--NKPVIVASQLLESMIE 398 (584)
Q Consensus 348 ~-----sDGImIa-----RGDL-----------------g~ei~~e~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~ 398 (584)
. +|||.+. |-++ +.=-|....|...+.|-+..+.. ..|+|-..-+.
T Consensus 188 ~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~----- 262 (299)
T cd02940 188 AAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE----- 262 (299)
T ss_pred HHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC-----
Confidence 3 6888741 1111 00011123456677777777767 68888764432
Q ss_pred CCCCChhhHHHHHHHHHcccceEeecCC
Q 007936 399 YPTPTRAEVADVSEAVRQRADALMLSGE 426 (584)
Q Consensus 399 ~p~PTrAEv~Dv~nav~~G~D~imLs~E 426 (584)
...|+..++..|||++|+..-
T Consensus 263 -------~~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 263 -------SWEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred -------CHHHHHHHHHcCCChheEcee
Confidence 346888999999999999743
No 79
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=89.40 E-value=5.2 Score=42.65 Aligned_cols=146 Identities=18% Similarity=0.271 Sum_probs=81.9
Q ss_pred cCHhhhHH-hHhcCCCEEEEcCC--C-CH--------HHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh---
Q 007936 284 KDWLDIDF-GITEGVDFIAISFV--K-SA--------EVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA--- 348 (584)
Q Consensus 284 kD~~dI~~-al~~gvD~I~lSfV--~-sa--------edV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~--- 348 (584)
.++.++.. +-+.|+|+|-+.+= . +. +.+.++.+.++ + .-+++|++||- +. +.++.++++.
T Consensus 112 ~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~--~-~~~iPv~vKl~-p~-~~~~~~~a~~l~~ 186 (325)
T cd04739 112 GGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVK--S-AVTIPVAVKLS-PF-FSALAHMAKQLDA 186 (325)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHH--h-ccCCCEEEEcC-CC-ccCHHHHHHHHHH
Confidence 34445443 34568999866442 2 11 12233333332 1 12589999984 32 4466666654
Q ss_pred --CCEEEE-eCCcccccCCC--------------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHH
Q 007936 349 --SDGAMV-ARGDLGAQIPL--------------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVS 411 (584)
Q Consensus 349 --sDGImI-aRGDLg~ei~~--------------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~ 411 (584)
+|||.+ .|. .+..+.+ ...+...+.+-+.++..+.|+|-..-+. ...|+.
T Consensus 187 ~Gadgi~~~nt~-~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~------------s~~Da~ 253 (325)
T cd04739 187 AGADGLVLFNRF-YQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVH------------DAEDVV 253 (325)
T ss_pred cCCCeEEEEcCc-CCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCC------------CHHHHH
Confidence 688766 332 1111111 1234445555555566678888654333 346888
Q ss_pred HHHHcccceEeecCCCCC-CCChHHHHHHHHHHHHHHhhhhhh
Q 007936 412 EAVRQRADALMLSGESAM-GQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 412 nav~~G~D~imLs~ETa~-G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
.++..|||++++...--. | | ..+.+|+++.+.|+.+
T Consensus 254 e~l~aGA~~Vqv~ta~~~~g--p----~~~~~i~~~L~~~l~~ 290 (325)
T cd04739 254 KYLLAGADVVMTTSALLRHG--P----DYIGTLLAGLEAWMEE 290 (325)
T ss_pred HHHHcCCCeeEEehhhhhcC--c----hHHHHHHHHHHHHHHH
Confidence 999999999999833222 2 3 3667778888877653
No 80
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=89.40 E-value=0.82 Score=51.29 Aligned_cols=93 Identities=25% Similarity=0.290 Sum_probs=65.9
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHhh--------------cC-----CCCceEEEeecCHHHHhcHHHHHHh----C--
Q 007936 295 EGVDFIAISFVKSAEVINHLKSYIAAR--------------SR-----DSDIAVIAKIESIDSLKNLEEIILA----S-- 349 (584)
Q Consensus 295 ~gvD~I~lSfV~saedV~~lr~~l~~~--------------~~-----~~~i~IiAKIEt~~av~NldeIl~~----s-- 349 (584)
..+-.|++||+.|++++..+.+++... +. ...+.||.-||..+++-|.++|+.. .
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 356789999999999999988876531 11 2468999999999999999999976 2
Q ss_pred C----EEEEeCCcccccCCCC----ChHHHHHHHHHHHHHcCCCeE
Q 007936 350 D----GAMVARGDLGAQIPLE----QVPSAQQKIVQLCRQLNKPVI 387 (584)
Q Consensus 350 D----GImIaRGDLg~ei~~e----~V~~~Qk~II~~c~~~gKPvi 387 (584)
| -+|+||.|=++..|+- -+-.+-.++-+.-.+.|.|+.
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~Iy 244 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIY 244 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 2 7999999999999873 233444556666678899864
No 81
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=89.26 E-value=10 Score=42.90 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=103.6
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHhH-hcCCCEEEEcC-CCCHHHHHHHHHHHHhhcCCCCceEEEeec-CHHHHhcH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFGI-TEGVDFIAISF-VKSAEVINHLKSYIAARSRDSDIAVIAKIE-SIDSLKNL 342 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~al-~~gvD~I~lSf-V~saedV~~lr~~l~~~~~~~~i~IiAKIE-t~~av~Nl 342 (584)
|||.+.|+.. +|..|+..|...+ +.|+|.|=+.| +.+..|.+.++.+.+. .....+.+-.- ..+. +
T Consensus 10 RDG~Q~~g~~-----~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~---~~~~~i~al~r~~~~d---i 78 (494)
T TIGR00973 10 RDGEQSPGAS-----LTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIART---VKNPRVCGLARCVEKD---I 78 (494)
T ss_pred CccCcCCCCC-----cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHh---CCCCEEEEEcCCCHHh---H
Confidence 5666666653 4667777776554 68999998765 5678888888776632 22345555543 2333 3
Q ss_pred HHHHHh-----CC--EEEEeCCccccc----CCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhh---HH
Q 007936 343 EEIILA-----SD--GAMVARGDLGAQ----IPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAE---VA 408 (584)
Q Consensus 343 deIl~~-----sD--GImIaRGDLg~e----i~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAE---v~ 408 (584)
|.-++. .+ .+++.-.|+-.+ ...+++.......++.|+++|.-|.+..+ ..+|++ +.
T Consensus 79 d~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E---------d~~r~d~~~l~ 149 (494)
T TIGR00973 79 DAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE---------DAGRTEIPFLA 149 (494)
T ss_pred HHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC---------CCCCCCHHHHH
Confidence 333332 23 234443443322 22356667777899999999998877532 344444 55
Q ss_pred HHHH-HHHcccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 409 DVSE-AVRQRADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 409 Dv~n-av~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
++++ +...|+|.+.|. +|.=+..|.+.-+.++.+.+..
T Consensus 150 ~~~~~~~~~Ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 150 RIVEAAINAGATTINIP-DTVGYALPAEYGNLIKGLRENV 188 (494)
T ss_pred HHHHHHHHcCCCEEEeC-CCCCCCCHHHHHHHHHHHHHhh
Confidence 5555 466799999997 8888999999988888886543
No 82
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=89.24 E-value=3.3 Score=44.63 Aligned_cols=214 Identities=15% Similarity=0.187 Sum_probs=126.7
Q ss_pred ccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHh--------------hcCCCCceEEEeecCHHHHhcHHHHHHh
Q 007936 283 PKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAA--------------RSRDSDIAVIAKIESIDSLKNLEEIILA 348 (584)
Q Consensus 283 ~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~--------------~~~~~~i~IiAKIEt~~av~NldeIl~~ 348 (584)
+.+++.+..|++.|+|+|.++- +++..++++-+- +..+.....+.+|.+++..+.+.+..+.
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~~ 88 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAKE 88 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhcc
Confidence 6788889999999999998864 666666554321 1223456788899999999999999999
Q ss_pred CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCC
Q 007936 349 SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESA 428 (584)
Q Consensus 349 sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa 428 (584)
.|-++|--.|. --+|+|. +|+...+..+ ++.. .-+-.|..-...++..|+|+++|..+.
T Consensus 89 ~~~viv~~~dW-~iIPlEn-------lIA~~~~~~~-l~a~-----------v~~~~eA~~a~~~LE~G~dGVvl~~~d- 147 (344)
T PRK02290 89 VDYVIVEGRDW-TIIPLEN-------LIADLGQSGK-IIAG-----------VADAEEAKLALEILEKGVDGVLLDPDD- 147 (344)
T ss_pred CCEEEEECCCC-cEecHHH-------HHhhhcCCce-EEEE-----------eCCHHHHHHHHHHhccCCCeEEECCCC-
Confidence 89888854454 3356665 3444433333 3321 344466666788999999999998663
Q ss_pred CCCChHHHHHHHHHHHHH-HhhhhhhhhhhhcccCCCCCC-----------CC------CcChHHHHHHHHH-------H
Q 007936 429 MGQFPDKALTVLRSVSLR-IEKWWREEKRHEAMELPDVGS-----------SF------AESISEEICNSAA-------K 483 (584)
Q Consensus 429 ~G~yPveaV~~m~~I~~~-aE~~~~~~~~~~~~~~~~~~~-----------~~------~~~~~~~ia~sav-------~ 483 (584)
|- .++-+...+.+ .|+.......-..+..-.+.. +. ..+..=.++.+-. .
T Consensus 148 ----~~-ei~~~~~~~~~~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~ 222 (344)
T PRK02290 148 ----PN-EIKAIVALIEEAREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVAS 222 (344)
T ss_pred ----HH-HHHHHHHHHhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccC
Confidence 33 33444444433 222100000000000000000 00 0000000011111 1
Q ss_pred HHhhcCCcEEEEccCC-chHHHHHhccCCCCcEEEEcCchhhhc
Q 007936 484 MANNLEVDALFVYTKT-GHMASLLSRCRPDCPIFAFTSTTSVRR 526 (584)
Q Consensus 484 ~A~~l~a~aIvv~T~s-G~tA~~lSr~RP~~PIiavT~~~~~aR 526 (584)
.-++.||-++=.|+.. |..+++||-.+..-.|+++-.+-++..
T Consensus 223 RPFRVNAGaVhaYv~~pgg~T~YLsEL~sG~eVlvVd~~G~tR~ 266 (344)
T PRK02290 223 RPFRVNAGAVHAYVRVPGDKTRYLSELRSGDEVLVVDADGNTRE 266 (344)
T ss_pred CCeeEecCcceeEEEcCCCcchhhHhhcCCCEEEEEeCCCCEEE
Confidence 2245688888888877 888889999999999999988765543
No 83
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.06 E-value=14 Score=35.89 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=74.9
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEE---EeecCHHHHhcHHHHHH-hCCEEEEeCCccccc
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVI---AKIESIDSLKNLEEIIL-ASDGAMVARGDLGAQ 362 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~Ii---AKIEt~~av~NldeIl~-~sDGImIaRGDLg~e 362 (584)
..++.+.+.|+|+|.++.-...+.+.++.++++ +.| ++++ ..-.|++-+. +++. -+|.+.+.++--+..
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~--~~g--~~~~v~~~~~~t~~e~~---~~~~~~~d~v~~~~~~~~~~ 140 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAK--KYG--KEVQVDLIGVEDPEKRA---KLLKLGVDIVILHRGIDAQA 140 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHH--HcC--CeEEEEEeCCCCHHHHH---HHHHCCCCEEEEcCcccccc
Confidence 456778899999999998776667777877774 223 4444 3455555443 2454 479988865422222
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHH
Q 007936 363 IPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALT 438 (584)
Q Consensus 363 i~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~ 438 (584)
.+.+... +.+-+.++....|+.+.- --+ ..++..+...|+|++.+.+--..-..|.++++
T Consensus 141 ~~~~~~~---~~i~~~~~~~~~~i~~~G----------GI~---~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 141 AGGWWPE---DDLKKVKKLLGVKVAVAG----------GIT---PDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred cCCCCCH---HHHHHHHhhcCCCEEEEC----------CcC---HHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 2212222 222222222567777642 112 23567888899999998754333334655543
No 84
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=88.97 E-value=6.6 Score=36.65 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=68.9
Q ss_pred hHHhHhcCCCEEEEcCCCC------HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccc
Q 007936 289 IDFGITEGVDFIAISFVKS------AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGA 361 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~s------aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ 361 (584)
.+++.+.|+|+|.++.-.- .+.++++++.+ .+..++.++.......... ..+. +|.+.+..+.-+-
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~ 149 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV------PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGG 149 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc------CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCC
Confidence 3578899999999998773 33444444332 2578899987654433211 2222 7999998775543
Q ss_pred cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 362 QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 362 ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
..... .+.....+....+..++|++.+.-+ -+ -.++..++..|+|++++.
T Consensus 150 ~~~~~-~~~~~~~~~~~~~~~~~pi~~~GGi---------~~---~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 150 GGRDA-VPIADLLLILAKRGSKVPVIAGGGI---------ND---PEDAAEALALGADGVIVG 199 (200)
T ss_pred CCccC-chhHHHHHHHHHhcCCCCEEEECCC---------CC---HHHHHHHHHhCCCEEEec
Confidence 32221 1111122333345668999987532 22 245567777899999975
No 85
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.95 E-value=2.8 Score=47.53 Aligned_cols=121 Identities=15% Similarity=0.147 Sum_probs=68.6
Q ss_pred CHhhhHHhHhcCCCEEEEcCCCCH-----HHHHHHHHHHHhhcCCCCceEEE-eecCHHHHhcHHHHHHhCCEEEEeCCc
Q 007936 285 DWLDIDFGITEGVDFIAISFVKSA-----EVINHLKSYIAARSRDSDIAVIA-KIESIDSLKNLEEIILASDGAMVARGD 358 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV~sa-----edV~~lr~~l~~~~~~~~i~IiA-KIEt~~av~NldeIl~~sDGImIaRGD 358 (584)
+.+-++..++.|+|+|.+.-..-. +.|+++|+. .+..+.|+| -|.|+++.+.+-+ .=+|+|.||.|-
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~-----~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~ 315 (502)
T PRK07107 243 YAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREK-----YGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGG 315 (502)
T ss_pred HHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHh-----CCCCceEEeccccCHHHHHHHHH--cCCCEEEECCCC
Confidence 355566678899999998722221 123333332 233355555 6888888765543 238999996543
Q ss_pred ccccCCC--CChHHHHH----HHHHHHHH----cC--CCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 359 LGAQIPL--EQVPSAQQ----KIVQLCRQ----LN--KPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 359 Lg~ei~~--e~V~~~Qk----~II~~c~~----~g--KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
=++-.-- -.+...|- .+.+++++ .| +|||.-.- .. --.||+.|+..|||++|+.
T Consensus 316 Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgG---------ir---~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 316 GSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGG---------IV---YDYHMTLALAMGADFIMLG 381 (502)
T ss_pred CcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCC---------CC---chhHHHHHHHcCCCeeeeC
Confidence 2111111 01222222 23333332 36 78885422 21 2489999999999999994
No 86
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=88.89 E-value=9.7 Score=39.07 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=43.6
Q ss_pred hHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeec--C-HHHHhcHHHHHHh-CCEEEEeCCccc
Q 007936 289 IDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIE--S-IDSLKNLEEIILA-SDGAMVARGDLG 360 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIE--t-~~av~NldeIl~~-sDGImIaRGDLg 360 (584)
.+.+.+.|+|||..||..+.+.++++.+.. .-.+..+.-|= | .++++|++++++. +||+-++|.=+.
T Consensus 162 ~~~a~~~GADyikt~~~~~~~~l~~~~~~~-----~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 162 ARLGAELGADIVKTPYTGDIDSFRDVVKGC-----PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred HHHHHHHCCCEEeccCCCCHHHHHHHHHhC-----CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 356678999999999975444444443322 22233333443 2 4568899999988 899999876553
No 87
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=88.87 E-value=15 Score=40.01 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=100.9
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHh-HhcCCCEEEEcCCCCH-HHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFG-ITEGVDFIAISFVKSA-EVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLE 343 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~a-l~~gvD~I~lSfV~sa-edV~~lr~~l~~~~~~~~i~IiAKIEt~~av~Nld 343 (584)
|||-+.|+. .+|..++..|... .+.|+|.|=+.|-... ++.+.++.+.+ .+.+..+++-.-. -.+.++
T Consensus 13 RDG~Q~~~~-----~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~---~~~~~~i~~~~r~--~~~di~ 82 (378)
T PRK11858 13 RDGEQTPGV-----VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAK---LGLNASILALNRA--VKSDID 82 (378)
T ss_pred CccCcCCCC-----CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHh---cCCCeEEEEEccc--CHHHHH
Confidence 555556554 3455666666555 4689999877664433 44455555442 2334555554322 123344
Q ss_pred HHHHh-CCEEE--EeCCccc----ccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHH-HH
Q 007936 344 EIILA-SDGAM--VARGDLG----AQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEA-VR 415 (584)
Q Consensus 344 eIl~~-sDGIm--IaRGDLg----~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~na-v~ 415 (584)
..++. .|.|- +.-.|+- .....++.....+..++.|++.|..|.+. .....+-+...+.+++.+ ..
T Consensus 83 ~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~------~ed~~r~~~~~l~~~~~~~~~ 156 (378)
T PRK11858 83 ASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS------AEDASRTDLDFLIEFAKAAEE 156 (378)
T ss_pred HHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE------eccCCCCCHHHHHHHHHHHHh
Confidence 44444 46433 3333421 11223455666678889999999988875 224445566667776664 55
Q ss_pred cccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 416 QRADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 416 ~G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
.|+|.|.|. +|.=.-.|.+.-+.++.+....
T Consensus 157 ~Ga~~I~l~-DT~G~~~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 157 AGADRVRFC-DTVGILDPFTMYELVKELVEAV 187 (378)
T ss_pred CCCCEEEEe-ccCCCCCHHHHHHHHHHHHHhc
Confidence 799999998 8888889999999988887654
No 88
>PRK08227 autoinducer 2 aldolase; Validated
Probab=88.57 E-value=6.2 Score=41.19 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=82.9
Q ss_pred HHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC-CChhhHHHHHHHHHcccce
Q 007936 342 LEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPT-PTRAEVADVSEAVRQRADA 420 (584)
Q Consensus 342 ldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~-PTrAEv~Dv~nav~~G~D~ 420 (584)
+..|+.-+|+++.-+|=+....+ ...++|.|+-.. -|-...+. +...-+++|-.|++.|+|+
T Consensus 48 ~~~i~~~~da~~~~~G~~~~~~~---------------~~~~~~lil~ls--~~t~~~~~~~~~~l~~sVeeAvrlGAdA 110 (264)
T PRK08227 48 IAPLFPYADVLMCTRGILRSVVP---------------PATNKPVVLRAS--GGNSILKELSNEAVAVDMEDAVRLNACA 110 (264)
T ss_pred HHHHhhcCCEEEeChhHHHhccc---------------ccCCCcEEEEEc--CCCCCCCCCCcccceecHHHHHHCCCCE
Confidence 55555558999987654432111 223578777522 11111222 3444568899999999999
Q ss_pred EeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCCc
Q 007936 421 LMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTG 500 (584)
Q Consensus 421 imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~sG 500 (584)
|..+-=-- +.+=-+.++-+.+++.++++|=.-.. ..++ ...... +..+ +...|+++|.+++||.|= ...+|
T Consensus 111 V~~~v~~G-s~~E~~~l~~l~~v~~ea~~~G~Pll--a~~p---rG~~~~-~~~~-~ia~aaRiaaELGADiVK-~~y~~ 181 (264)
T PRK08227 111 VAAQVFIG-SEYEHQSIKNIIQLVDAGLRYGMPVM--AVTA---VGKDMV-RDAR-YFSLATRIAAEMGAQIIK-TYYVE 181 (264)
T ss_pred EEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCcEE--EEec---CCCCcC-chHH-HHHHHHHHHHHHcCCEEe-cCCCH
Confidence 98863211 23336778888888889988621100 0010 011112 2334 667788999999999553 33346
Q ss_pred -hHHHHHhccCCCCcEEE
Q 007936 501 -HMASLLSRCRPDCPIFA 517 (584)
Q Consensus 501 -~tA~~lSr~RP~~PIia 517 (584)
...+.+. .-| +||+.
T Consensus 182 ~~f~~vv~-a~~-vPVvi 197 (264)
T PRK08227 182 EGFERITA-GCP-VPIVI 197 (264)
T ss_pred HHHHHHHH-cCC-CcEEE
Confidence 4444455 333 45553
No 89
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=88.36 E-value=13 Score=38.10 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=88.4
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCC
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPL 365 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~ 365 (584)
...|+.-.+.|+|+|.+-+=.+..++.++-+.+ ++.|....|.-+-+| .++.++.++...|.|+| ++++-|.
T Consensus 72 ~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~I--k~~G~kaGlalnP~T--~~~~l~~~l~~vD~VLv----MsV~PGf 143 (229)
T PRK09722 72 QDYIDQLADAGADFITLHPETINGQAFRLIDEI--RRAGMKVGLVLNPET--PVESIKYYIHLLDKITV----MTVDPGF 143 (229)
T ss_pred HHHHHHHHHcCCCEEEECccCCcchHHHHHHHH--HHcCCCEEEEeCCCC--CHHHHHHHHHhcCEEEE----EEEcCCC
Confidence 445666688999998887632335677777777 455667788888888 45789999999998887 4444443
Q ss_pred ---CChHHHHHHHHHHH---HHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCC--CChHHHH
Q 007936 366 ---EQVPSAQQKIVQLC---RQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMG--QFPDKAL 437 (584)
Q Consensus 366 ---e~V~~~Qk~II~~c---~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G--~yPveaV 437 (584)
.-.+..-++|-+.. .++|..+.+. +.... + ..-+......|+|.+++.+---.| ..|.+++
T Consensus 144 ~GQ~fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGGI-~---~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i 212 (229)
T PRK09722 144 AGQPFIPEMLDKIAELKALRERNGLEYLIE-------VDGSC-N---QKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAW 212 (229)
T ss_pred cchhccHHHHHHHHHHHHHHHhcCCCeEEE-------EECCC-C---HHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHH
Confidence 23333444443322 3445444331 11111 1 123455678899999886421234 3588999
Q ss_pred HHHHHHHHHH
Q 007936 438 TVLRSVSLRI 447 (584)
Q Consensus 438 ~~m~~I~~~a 447 (584)
+.|+....++
T Consensus 213 ~~l~~~~~~~ 222 (229)
T PRK09722 213 DIMTAQIEAA 222 (229)
T ss_pred HHHHHHHHHh
Confidence 9988765444
No 90
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=88.19 E-value=5.4 Score=40.41 Aligned_cols=144 Identities=12% Similarity=0.071 Sum_probs=85.2
Q ss_pred CCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHH--HhCCEEEEeCCc
Q 007936 281 ISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEII--LASDGAMVARGD 358 (584)
Q Consensus 281 lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl--~~sDGImIaRGD 358 (584)
.+..=...++...+.|+|+|.+-+--+...+.+..+.++ +.|..+.|-..-+| .++.+.+++ ...|.|++
T Consensus 73 m~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik--~~G~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~---- 144 (228)
T PTZ00170 73 MVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIR--EAGMKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV---- 144 (228)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHH--HCCCeEEEEECCCC--CHHHHHHHHccchhhhHHh----
Confidence 333334456777899999998876544433777777774 34544444444444 688899998 66898875
Q ss_pred ccccCCCCChH---HHHHHHHHHHHHcC-CCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChH
Q 007936 359 LGAQIPLEQVP---SAQQKIVQLCRQLN-KPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPD 434 (584)
Q Consensus 359 Lg~ei~~e~V~---~~Qk~II~~c~~~g-KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPv 434 (584)
++++.|..... ..-.++-+.....+ ..+.++ +-=+. ..+..++..|+|.+.+.+--.....|.
T Consensus 145 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~Vd----------GGI~~---~ti~~~~~aGad~iVvGsaI~~a~d~~ 211 (228)
T PTZ00170 145 MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVD----------GGINL---ETIDIAADAGANVIVAGSSIFKAKDRK 211 (228)
T ss_pred hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEEC----------CCCCH---HHHHHHHHcCCCEEEEchHHhCCCCHH
Confidence 67776664322 22233332222222 223222 11111 245677888999998864433345699
Q ss_pred HHHHHHHHHHH
Q 007936 435 KALTVLRSVSL 445 (584)
Q Consensus 435 eaV~~m~~I~~ 445 (584)
++++.+++...
T Consensus 212 ~~~~~i~~~~~ 222 (228)
T PTZ00170 212 QAIELLRESVQ 222 (228)
T ss_pred HHHHHHHHHHH
Confidence 99888876643
No 91
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=87.90 E-value=13 Score=37.28 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=77.1
Q ss_pred CCCCccCHhhh-HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEee-----------cCHHHHhcHHHHH
Q 007936 279 PTISPKDWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKI-----------ESIDSLKNLEEII 346 (584)
Q Consensus 279 p~lt~kD~~dI-~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKI-----------Et~~av~NldeIl 346 (584)
|..+..|.+.+ +.+.+.|+|.|+++ +-.+...+..+. ....++.++ .+..-+..+++.+
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~-----~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~ 86 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA-----GDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAV 86 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC-----CCCcEEEEECCCCCCCCCCCCchhhhcCHHHHH
Confidence 44566676654 56778899999998 333444333331 122333332 1222233466767
Q ss_pred Hh-CCEE--EEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHH-HHHHHHcccceEe
Q 007936 347 LA-SDGA--MVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVAD-VSEAVRQRADALM 422 (584)
Q Consensus 347 ~~-sDGI--mIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~D-v~nav~~G~D~im 422 (584)
+. +|++ ++--|++. ..++...-+++.+.|+++|.|+|+-+..-.-...+ .-+..++.. ...+...|+|.+-
T Consensus 87 ~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~-~~~~~~i~~~~~~a~~~GaD~Ik 161 (235)
T cd00958 87 RLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKN-EKDPDLIAYAARIGAELGADIVK 161 (235)
T ss_pred HCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccC-ccCHHHHHHHHHHHHHHCCCEEE
Confidence 66 7877 55555542 35666677889999999999999832110000000 012345554 4558889999999
Q ss_pred ecC
Q 007936 423 LSG 425 (584)
Q Consensus 423 Ls~ 425 (584)
++.
T Consensus 162 ~~~ 164 (235)
T cd00958 162 TKY 164 (235)
T ss_pred ecC
Confidence 963
No 92
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=87.79 E-value=6.7 Score=43.12 Aligned_cols=148 Identities=16% Similarity=0.257 Sum_probs=86.2
Q ss_pred cCHhhhHHh-HhcCCCEEEEcC-----C----------CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHH
Q 007936 284 KDWLDIDFG-ITEGVDFIAISF-----V----------KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIIL 347 (584)
Q Consensus 284 kD~~dI~~a-l~~gvD~I~lSf-----V----------~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~ 347 (584)
.++.+.... -+.|+|+|-+.+ + ++++.+.++.+.++.. .++.|++||= + .+.++.+|++
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~---~~~Pv~vKl~-p-~~~~~~~~a~ 187 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG---SRLPVIVKLT-P-NITDIREPAR 187 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc---cCCcEEEEcC-C-CcccHHHHHH
Confidence 344444333 345788866532 2 4566677766666421 3589999993 3 3556777766
Q ss_pred h-----CCEEEE-----eCCc-----------c------cccCCCCChHHHHHHHHHHHHHc---CCCeEEehhhhHhhh
Q 007936 348 A-----SDGAMV-----ARGD-----------L------GAQIPLEQVPSAQQKIVQLCRQL---NKPVIVASQLLESMI 397 (584)
Q Consensus 348 ~-----sDGImI-----aRGD-----------L------g~ei~~e~V~~~Qk~II~~c~~~---gKPvivATqmLeSMi 397 (584)
. +|||.+ +|-. | |.=-|....|...+.|-+..++. +.|+|-..-+.
T Consensus 188 ~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~---- 263 (420)
T PRK08318 188 AAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE---- 263 (420)
T ss_pred HHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC----
Confidence 4 688882 2211 1 00012234455666666666655 56888654332
Q ss_pred cCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 398 EYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 398 ~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
...|+..+++.|||+||+..- .-.++- ..+.+|..+.+.|+..
T Consensus 264 --------s~~da~e~i~aGA~~Vqi~ta--~~~~gp---~ii~~I~~~L~~~l~~ 306 (420)
T PRK08318 264 --------TWRDAAEFILLGAGTVQVCTA--AMQYGF---RIVEDMISGLSHYMDE 306 (420)
T ss_pred --------CHHHHHHHHHhCCChheeeee--eccCCc---hhHHHHHHHHHHHHHH
Confidence 346888999999999999833 322222 3455567777666543
No 93
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.78 E-value=8.7 Score=39.70 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=71.6
Q ss_pred hhhHHhHhcCCCEEEEcCC-----------CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-----CC
Q 007936 287 LDIDFGITEGVDFIAISFV-----------KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-----SD 350 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV-----------~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-----sD 350 (584)
+..+.+.+.|+|+|-+.+= ++++.+.++.+.++.. -++.|++|+-.....+++.++++. +|
T Consensus 115 ~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad 191 (289)
T cd02810 115 ELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA---VDIPLLVKLSPYFDLEDIVELAKAAERAGAD 191 (289)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 3345566779999877541 3456666666666421 157899998765444445555543 69
Q ss_pred EEEEeCCcccc--cC------------CC---CChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHH
Q 007936 351 GAMVARGDLGA--QI------------PL---EQVPSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVS 411 (584)
Q Consensus 351 GImIaRGDLg~--ei------------~~---e~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~ 411 (584)
+|.+.-+-.+. +. ++ .-.+...+.+-+.++.. ++|+|....+ -| ..|+.
T Consensus 192 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI---------~~---~~da~ 259 (289)
T cd02810 192 GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGI---------DS---GEDVL 259 (289)
T ss_pred EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCC---------CC---HHHHH
Confidence 88875221111 00 11 11223344444455555 7898876432 22 35678
Q ss_pred HHHHcccceEeec
Q 007936 412 EAVRQRADALMLS 424 (584)
Q Consensus 412 nav~~G~D~imLs 424 (584)
.++..|+|++++.
T Consensus 260 ~~l~~GAd~V~vg 272 (289)
T cd02810 260 EMLMAGASAVQVA 272 (289)
T ss_pred HHHHcCccHheEc
Confidence 8888999999997
No 94
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=87.48 E-value=13 Score=37.69 Aligned_cols=140 Identities=13% Similarity=0.135 Sum_probs=85.4
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCC
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPL 365 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~ 365 (584)
...+..-.+.|+|+|.+-+ ++..++.++-+.+ ++.|-...|.-+-+| -++.++.++..+|.|+| ++++-|.
T Consensus 75 ~~~i~~~~~~gad~I~~H~-Ea~~~~~~~l~~I--r~~g~k~GlalnP~T--~~~~i~~~l~~vD~Vlv----MtV~PGf 145 (223)
T PRK08745 75 DRIVPDFADAGATTISFHP-EASRHVHRTIQLI--KSHGCQAGLVLNPAT--PVDILDWVLPELDLVLV----MSVNPGF 145 (223)
T ss_pred HHHHHHHHHhCCCEEEEcc-cCcccHHHHHHHH--HHCCCceeEEeCCCC--CHHHHHHHHhhcCEEEE----EEECCCC
Confidence 3445666789999988876 4445677777777 445666778888887 56778999999998888 4444444
Q ss_pred ---CChHHHHHHHHH---HHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHH
Q 007936 366 ---EQVPSAQQKIVQ---LCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTV 439 (584)
Q Consensus 366 ---e~V~~~Qk~II~---~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~ 439 (584)
.-++..-++|-+ ...+.+..+-+. +... =+ ...+......|+|.+++.+--.....|.++++.
T Consensus 146 ~GQ~fi~~~l~KI~~l~~~~~~~~~~~~Ie-------VDGG-I~---~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~ 214 (223)
T PRK08745 146 GGQAFIPSALDKLRAIRKKIDALGKPIRLE-------IDGG-VK---ADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQ 214 (223)
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCCeeEE-------EECC-CC---HHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHH
Confidence 223333333332 223445443322 1111 11 123456677899999886322112358888888
Q ss_pred HHHHHH
Q 007936 440 LRSVSL 445 (584)
Q Consensus 440 m~~I~~ 445 (584)
|++...
T Consensus 215 lr~~~~ 220 (223)
T PRK08745 215 MRAAVA 220 (223)
T ss_pred HHHHHH
Confidence 887653
No 95
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=87.19 E-value=9.5 Score=42.96 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=74.3
Q ss_pred cCHhhhHHhHhcCCCEEEEc--CCCCHHHHHHHHHHHHhhcCCCCce-EEEeecCHHHHhcHHHHHHhCCEEEEeCCccc
Q 007936 284 KDWLDIDFGITEGVDFIAIS--FVKSAEVINHLKSYIAARSRDSDIA-VIAKIESIDSLKNLEEIILASDGAMVARGDLG 360 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lS--fV~saedV~~lr~~l~~~~~~~~i~-IiAKIEt~~av~NldeIl~~sDGImIaRGDLg 360 (584)
.+++.++..++.|+|.|++- .-++ +.+.+..+.++.. . .+.. ++.-+-|.+...++-+. =+|+|-+|=|--+
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~-~-p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs 302 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAK-Y-PDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGS 302 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhh-C-CCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCc
Confidence 44777778889999988653 2222 3344444444322 1 2344 56788888877766652 3799987533211
Q ss_pred cc-------CCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 361 AQ-------IPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 361 ~e-------i~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
.+ .+.+. ..+-..+.+.|++.++|+|...- ..+ -.|++.|+..|||++|+.
T Consensus 303 ~~~~r~~~~~g~p~-~~~~~~~~~~~~~~~~~viadGG---------i~~---~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 303 ICTTRIVAGVGVPQ-ITAIADAAEAAKKYGIPVIADGG---------IRY---SGDIAKALAAGASAVMLG 360 (486)
T ss_pred cccceeecCCCcCH-HHHHHHHHHHhccCCCeEEEcCC---------CCC---HHHHHHHHHhCCCEEEEC
Confidence 11 11121 22334456667777899886322 222 378999999999999984
No 96
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=87.07 E-value=3.3 Score=41.01 Aligned_cols=131 Identities=12% Similarity=0.136 Sum_probs=72.2
Q ss_pred HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhc----HHHHHHh-----CCEEEEeCCccc
Q 007936 290 DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKN----LEEIILA-----SDGAMVARGDLG 360 (584)
Q Consensus 290 ~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~N----ldeIl~~-----sDGImIaRGDLg 360 (584)
+.+.+.|+|+|.+..--..+.+.++.+.++ ..|..+.+..+.++.++++. ++.++.. .||..+
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~--~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~------ 145 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAA--ESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVA------ 145 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHH--hcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE------
Confidence 556789999999999765666877777774 33444555666666555554 3333332 244433
Q ss_pred ccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHH
Q 007936 361 AQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVL 440 (584)
Q Consensus 361 ~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m 440 (584)
+...+..+ +++- +..+.++.+.+.-+ +++-.++..++..|+|.+.+..--.-..-|.++++.|
T Consensus 146 ---~~~~~~~i-~~l~---~~~~~~~~ivdgGI----------~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l 208 (215)
T PRK13813 146 ---PATRPERV-RYIR---SRLGDELKIISPGI----------GAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAI 208 (215)
T ss_pred ---CCCcchhH-HHHH---HhcCCCcEEEeCCc----------CCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHH
Confidence 22221111 1111 22233322121111 1121136677788999998874433345699999888
Q ss_pred HHHHH
Q 007936 441 RSVSL 445 (584)
Q Consensus 441 ~~I~~ 445 (584)
++.++
T Consensus 209 ~~~~~ 213 (215)
T PRK13813 209 NEEIR 213 (215)
T ss_pred HHHHh
Confidence 77654
No 97
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=87.02 E-value=20 Score=36.71 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=95.8
Q ss_pred cCCcccCCccccCCCCCccCHhhhHH-hHhcCCCEEEEcCCCCH-HHHHHHHHHHHhhcCCCCceEEEee-cCHHHHhcH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDF-GITEGVDFIAISFVKSA-EVINHLKSYIAARSRDSDIAVIAKI-ESIDSLKNL 342 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~-al~~gvD~I~lSfV~sa-edV~~lr~~l~~~~~~~~i~IiAKI-Et~~av~Nl 342 (584)
|||-+.++. .+|..++..|.. -.+.|+|.|=+.|-... .+.+.++.+.+ . +...++.+-. -+.+++
T Consensus 7 RDG~Q~~~~-----~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~-~--~~~~~~~~~~r~~~~~v--- 75 (259)
T cd07939 7 RDGEQAPGV-----AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVA-L--GLPARLIVWCRAVKEDI--- 75 (259)
T ss_pred CCCCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHh-c--CCCCEEEEeccCCHHHH---
Confidence 455555443 345556655544 45789999877654433 33345555442 1 2235555443 233333
Q ss_pred HHHHHh-CCEEEEe--CCcc----cccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHH-H
Q 007936 343 EEIILA-SDGAMVA--RGDL----GAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEA-V 414 (584)
Q Consensus 343 deIl~~-sDGImIa--RGDL----g~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~na-v 414 (584)
+...+. .|.|-+. -.|. -.....++.....+.+++.|++.|..|.+.. ....+-+..++.+++.. .
T Consensus 76 ~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~ 149 (259)
T cd07939 76 EAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQ 149 (259)
T ss_pred HHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHH
Confidence 333333 4644442 1111 0111223444556678999999999877642 23345567777777764 5
Q ss_pred HcccceEeecCCCCCCCChHHHHHHHHHHHHH
Q 007936 415 RQRADALMLSGESAMGQFPDKALTVLRSVSLR 446 (584)
Q Consensus 415 ~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~ 446 (584)
..|+|.+.|. +|.=.-+|.+.-+.++.+.+.
T Consensus 150 ~~G~~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 150 EAGADRLRFA-DTVGILDPFTTYELIRRLRAA 180 (259)
T ss_pred HCCCCEEEeC-CCCCCCCHHHHHHHHHHHHHh
Confidence 6799999997 888889999988888777644
No 98
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=87.00 E-value=4.4 Score=39.36 Aligned_cols=116 Identities=21% Similarity=0.245 Sum_probs=68.1
Q ss_pred CccCHhhhHHhHhcCCCEEEE--cCCCC--HHHHHHHHHHHHhhcCCCCceEEE--eecCHHHHhcHHHHHHh-CCEEEE
Q 007936 282 SPKDWLDIDFGITEGVDFIAI--SFVKS--AEVINHLKSYIAARSRDSDIAVIA--KIESIDSLKNLEEIILA-SDGAMV 354 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~l--SfV~s--aedV~~lr~~l~~~~~~~~i~IiA--KIEt~~av~NldeIl~~-sDGImI 354 (584)
+..+..++..++..++++|=+ +|+.+ .+.++.+++.. .+..+++ |+.+.. -.-+++..++ +|++.+
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~~~~~~g~~~i~~i~~~~------~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~ 83 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREAF------PDKIIVADLKTADAG-ALEAEMAFKAGADIVTV 83 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCHHHHHhCHHHHHHHHHHC------CCCEEEEEEEecccc-HHHHHHHHhcCCCEEEE
Confidence 444555565566666998777 66532 34444444321 2355665 666542 1123555555 788886
Q ss_pred eCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 355 ARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 355 aRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
- .+..+..-+.+++.|+++|++++++ .|+.....++..+...|+|.+.+.
T Consensus 84 h---------~~~~~~~~~~~i~~~~~~g~~~~v~-----------~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 84 L---------GAAPLSTIKKAVKAAKKYGKEVQVD-----------LIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred E---------eeCCHHHHHHHHHHHHHcCCeEEEE-----------EeCCCCHHHHHHHHHCCCCEEEEc
Confidence 3 2222344578999999999999974 121122233445777899998883
No 99
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=86.83 E-value=2.7 Score=45.46 Aligned_cols=211 Identities=16% Similarity=0.211 Sum_probs=122.3
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHh-----------------------hcCCCCceEEEeecCHHHHhcH
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAA-----------------------RSRDSDIAVIAKIESIDSLKNL 342 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~-----------------------~~~~~~i~IiAKIEt~~av~Nl 342 (584)
++.+..|++.|+|.|+++- +++..++++-+- +..+.++..+..|.+.+.++.+
T Consensus 15 k~~vt~AlEsGvd~vv~~~----~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~a 90 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDD----EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEEA 90 (354)
T ss_pred HHHHHHHHHcCCCEEEECH----hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHHH
Confidence 6778899999999999885 333333322110 1123455689999999999999
Q ss_pred HHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEe
Q 007936 343 EEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALM 422 (584)
Q Consensus 343 deIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~im 422 (584)
-+..+..|-+++--.|.. -||+|.+ |++....+.-++.. .-+-.|..=...+++.|+|+++
T Consensus 91 ~~~~~~~~~~iv~~~Dw~-iIPlEnl-------iA~~~~~~~~i~a~-----------v~~~~eA~~~~~~LE~G~dGVl 151 (354)
T PF01959_consen 91 CELAKRADYVIVEFRDWT-IIPLENL-------IAALQGSSTKIIAV-----------VADAEEARVALEVLEKGVDGVL 151 (354)
T ss_pred HHHhccCCeEEEEcCCCc-EecHHHH-------HHHhcCCCceEEEE-----------eCCHHHHHHHHHHHhcCCCeEE
Confidence 999988898888655553 3566653 33333333333332 3556677777899999999999
Q ss_pred ecCCCCCCCChHHHHHHHHHHHHHHhh-hhh-hhhhhhcccCCCCCC-------CC--Cc------ChHHH--HHH-HHH
Q 007936 423 LSGESAMGQFPDKALTVLRSVSLRIEK-WWR-EEKRHEAMELPDVGS-------SF--AE------SISEE--ICN-SAA 482 (584)
Q Consensus 423 Ls~ETa~G~yPveaV~~m~~I~~~aE~-~~~-~~~~~~~~~~~~~~~-------~~--~~------~~~~~--ia~-sav 482 (584)
|..+. |- .++-+...+.+.+. .+. ....-..+..-.+.. +. +. +.+.. ++. .+.
T Consensus 152 l~~~d-----~~-ei~~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~ 225 (354)
T PF01959_consen 152 LDPDD-----PA-EIKALVALLKERSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETH 225 (354)
T ss_pred ECCCC-----HH-HHHHHHHHHhhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccc
Confidence 98763 33 34444444444221 110 000000000000000 00 00 00000 000 000
Q ss_pred H------HHhhcCCcEEEEccCC-chHHHHHhccCCCCcEEEEcCchhhh
Q 007936 483 K------MANNLEVDALFVYTKT-GHMASLLSRCRPDCPIFAFTSTTSVR 525 (584)
Q Consensus 483 ~------~A~~l~a~aIvv~T~s-G~tA~~lSr~RP~~PIiavT~~~~~a 525 (584)
+ --++.||-++=.|+.. |..+++||-.+..-.|+++-.+-++.
T Consensus 226 ~~pYva~RPFRVNAGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~tR 275 (354)
T PF01959_consen 226 ESPYVASRPFRVNAGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRTR 275 (354)
T ss_pred cCCCCCCCCceEecCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCEE
Confidence 0 1245688888888877 88888999999999999998875543
No 100
>PRK07695 transcriptional regulator TenI; Provisional
Probab=86.67 E-value=12 Score=36.62 Aligned_cols=131 Identities=8% Similarity=0.071 Sum_probs=76.6
Q ss_pred hHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCC
Q 007936 289 IDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQ 367 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~ 367 (584)
.+.+.+.|+|++-++.-. ..+..+|+.+ .+..|-+.+.|.+- +.+..+. +|.+++++-.-+..-+-..
T Consensus 66 ~~la~~~~~~gvHl~~~~--~~~~~~r~~~------~~~~ig~s~~s~e~---a~~a~~~Gadyi~~g~v~~t~~k~~~~ 134 (201)
T PRK07695 66 VDIALLLNIHRVQLGYRS--FSVRSVREKF------PYLHVGYSVHSLEE---AIQAEKNGADYVVYGHVFPTDCKKGVP 134 (201)
T ss_pred HHHHHHcCCCEEEeCccc--CCHHHHHHhC------CCCEEEEeCCCHHH---HHHHHHcCCCEEEECCCCCCCCCCCCC
Confidence 456788999999998632 2345555543 13455565555432 2222222 7999988743332111000
Q ss_pred hHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHH
Q 007936 368 VPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVS 444 (584)
Q Consensus 368 V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~ 444 (584)
.. -.+.+-+.+...++||+..-. . +. .++..+...|+|++.+.+.-.....|.++++.+.++.
T Consensus 135 ~~-g~~~l~~~~~~~~ipvia~GG---------I-~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~ 197 (201)
T PRK07695 135 AR-GLEELSDIARALSIPVIAIGG---------I-TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESI 197 (201)
T ss_pred CC-CHHHHHHHHHhCCCCEEEEcC---------C-CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHH
Confidence 00 012222234455899997632 2 22 4456667899999998877766678999998877654
No 101
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=85.86 E-value=16 Score=36.95 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=86.1
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCC
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPL 365 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~ 365 (584)
...++.-.+.|+|+|.+-+ ++..++.++-+.++ +.|....+.-+=+| -++.++.++...|.|++ ++++-|.
T Consensus 71 ~~~i~~~~~~gad~i~~H~-Ea~~~~~~~l~~ik--~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlv----MtV~PGf 141 (220)
T PRK08883 71 DRIIPDFAKAGASMITFHV-EASEHVDRTLQLIK--EHGCQAGVVLNPAT--PLHHLEYIMDKVDLILL----MSVNPGF 141 (220)
T ss_pred HHHHHHHHHhCCCEEEEcc-cCcccHHHHHHHHH--HcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEE----EEecCCC
Confidence 4456666789999888765 65567777777774 45666778887787 57779999999998887 3333333
Q ss_pred ---CChHHHHHHHHHHH---HHcC--CCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHH
Q 007936 366 ---EQVPSAQQKIVQLC---RQLN--KPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKAL 437 (584)
Q Consensus 366 ---e~V~~~Qk~II~~c---~~~g--KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV 437 (584)
.-++..-++|-+.+ .+.| .|+.+.-- =+ ...+...+..|+|++...+--.....|.+++
T Consensus 142 gGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGG----------I~---~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i 208 (220)
T PRK08883 142 GGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGG----------VK---VDNIREIAEAGADMFVAGSAIFGQPDYKAVI 208 (220)
T ss_pred CCceecHhHHHHHHHHHHHHHhcCCCeeEEEECC----------CC---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHH
Confidence 12333333333332 2233 56544321 11 2345667788999998864432234688888
Q ss_pred HHHHHHH
Q 007936 438 TVLRSVS 444 (584)
Q Consensus 438 ~~m~~I~ 444 (584)
+.+++..
T Consensus 209 ~~l~~~~ 215 (220)
T PRK08883 209 DEMRAEL 215 (220)
T ss_pred HHHHHHH
Confidence 8877654
No 102
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=85.84 E-value=8.2 Score=38.44 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=65.8
Q ss_pred CHhhhHHhHhcCCCEEEEc--CCCCHH--HHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCccc
Q 007936 285 DWLDIDFGITEGVDFIAIS--FVKSAE--VINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLG 360 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lS--fV~sae--dV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg 360 (584)
+.+.++.+.+.|+|+|.+- ..+.++ .+.++.+.++ +.+ ++.+++.+.|.+-.....+ .-+|.+.+...++.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~--~~g-~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t 155 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIH--EEY-NCLLMADISTLEEALNAAK--LGFDIIGTTLSGYT 155 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHH--HHh-CCeEEEECCCHHHHHHHHH--cCCCEEEccCcccc
Confidence 4567889999999987662 222232 5566665553 223 5788887766543322211 11688766432221
Q ss_pred cc---CCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 361 AQ---IPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 361 ~e---i~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
-. .....+ ..-+.+ ....+.|++..-.+ - ...|+..++..|+|++++.
T Consensus 156 ~~~~~~~~~~~-~~l~~i---~~~~~ipvia~GGI---------~---~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 156 EETAKTEDPDF-ELLKEL---RKALGIPVIAEGRI---------N---SPEQAAKALELGADAVVVG 206 (219)
T ss_pred ccccCCCCCCH-HHHHHH---HHhcCCCEEEeCCC---------C---CHHHHHHHHHCCCCEEEEc
Confidence 11 111111 222222 22347999976332 1 2257788888999999986
No 103
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=85.81 E-value=14 Score=42.83 Aligned_cols=148 Identities=10% Similarity=0.147 Sum_probs=95.9
Q ss_pred HhhhHHhHhcCCCEE--EEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeec--CHHHHhcHHHHHHhCCEEEEeCCcccc
Q 007936 286 WLDIDFGITEGVDFI--AISFVKSAEVINHLKSYIAARSRDSDIAVIAKIE--SIDSLKNLEEIILASDGAMVARGDLGA 361 (584)
Q Consensus 286 ~~dI~~al~~gvD~I--~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIE--t~~av~NldeIl~~sDGImIaRGDLg~ 361 (584)
.+.|....+.|+|.| +++-.+.|+.+.++++.+ ...|.+++++|-|- -.-|+..+ +.+|.|=|-||.++-
T Consensus 44 v~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l--~~~G~~iPLVADIHF~~~~A~~a~----~~v~kiRINPGN~~~ 117 (611)
T PRK02048 44 VAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGL--RSQGYMVPLVADVHFNPKVADVAA----QYAEKVRINPGNYVD 117 (611)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHH--hhcCCCCCEEEecCCCcHHHHHHH----HhhCCEEECCCcCCC
Confidence 344556678899985 455566666666666666 34567899999993 33343333 338999999999977
Q ss_pred cC---------------CCCChHHHHHHHHHHHHHcCCCeEEehh-------hhHhhhcCCCCChhhH-----HHHHHHH
Q 007936 362 QI---------------PLEQVPSAQQKIVQLCRQLNKPVIVASQ-------LLESMIEYPTPTRAEV-----ADVSEAV 414 (584)
Q Consensus 362 ei---------------~~e~V~~~Qk~II~~c~~~gKPvivATq-------mLeSMi~~p~PTrAEv-----~Dv~nav 414 (584)
.- .++++..--+.++.+|+++|+|+=+-++ +|+.. . +|..-+ .-+--+-
T Consensus 118 ~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~y---g-~tpe~mVeSAle~~~i~e 193 (611)
T PRK02048 118 PGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRY---G-DTPEGMVESCMEFLRICV 193 (611)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh---C-CChHHHHHHHHHHHHHHH
Confidence 41 2235556667899999999999866543 44432 1 232221 2233366
Q ss_pred HcccceEeecCCCCCCCChHHHHHHHHHH
Q 007936 415 RQRADALMLSGESAMGQFPDKALTVLRSV 443 (584)
Q Consensus 415 ~~G~D~imLs~ETa~G~yPveaV~~m~~I 443 (584)
..|++=+.+|--++.-..++.+.+.|..-
T Consensus 194 ~~~f~diviS~KsS~~~~~V~AyRlLa~~ 222 (611)
T PRK02048 194 EEHFTDVVISIKASNTVVMVRTVRLLVAV 222 (611)
T ss_pred HCCCCcEEEEEEeCCcHHHHHHHHHHHHH
Confidence 78999999998887766555555555443
No 104
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=85.72 E-value=18 Score=35.21 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=74.6
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCccccc---C
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQ---I 363 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~e---i 363 (584)
..++.+.+.|+|+|.++--.+ ++.....+.++ ..+.+..+ -++.....+.+.++...+|++.+..-+-|.. .
T Consensus 70 ~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~--~~g~~~~~--~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~ 144 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHPEAS-EHIHRLLQLIK--DLGAKAGI--VLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKF 144 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHH--HcCCcEEE--EECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccc
Confidence 346677799999999976544 44444545553 23333333 3444445777888887789988864332221 1
Q ss_pred CCCChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHH
Q 007936 364 PLEQVPSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALT 438 (584)
Q Consensus 364 ~~e~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~ 438 (584)
+...+ ..-+++-+.+++. ++|+.++.- . + ..++..++..|+|++.+.+.-..-.-|.++++
T Consensus 145 ~~~~~-~~i~~i~~~~~~~~~~~~i~v~GG---------I-~---~env~~l~~~gad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 145 IPDTL-EKIREVRKMIDENGLSILIEVDGG---------V-N---DDNARELAEAGADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred cHHHH-HHHHHHHHHHHhcCCCceEEEECC---------c-C---HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHH
Confidence 11111 1222333333333 357766531 1 1 14567778899999998755443345666654
No 105
>PLN02334 ribulose-phosphate 3-epimerase
Probab=85.71 E-value=27 Score=35.07 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=76.7
Q ss_pred hhHHhHhcCCCEEEEcCCC--CHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh--CCEEEEeCCcccccC
Q 007936 288 DIDFGITEGVDFIAISFVK--SAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA--SDGAMVARGDLGAQI 363 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~--saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~--sDGImIaRGDLg~ei 363 (584)
.++.+.+.|+|+|.+..-+ +..-...++... +.+..+.+...=.| -++.+.++++. +|.|+++.-.=|..-
T Consensus 80 ~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~---~~g~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~~v~pg~~~ 154 (229)
T PLN02334 80 YVPDFAKAGASIFTFHIEQASTIHLHRLIQQIK---SAGMKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVMSVEPGFGG 154 (229)
T ss_pred HHHHHHHcCCCEEEEeeccccchhHHHHHHHHH---HCCCeEEEEECCCC--CHHHHHHHHhccCCCEEEEEEEecCCCc
Confidence 4566789999999887764 322233444433 22333444432223 34557778888 999988543322111
Q ss_pred CCCCh-HHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHH
Q 007936 364 PLEQV-PSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVL 440 (584)
Q Consensus 364 ~~e~V-~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m 440 (584)
+.. +...+++ +..++. ++|+.+..-+ |. ..+......|+|++...+--.--..|.++++-+
T Consensus 155 --~~~~~~~~~~i-~~~~~~~~~~~I~a~GGI----------~~---e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 155 --QSFIPSMMDKV-RALRKKYPELDIEVDGGV----------GP---STIDKAAEAGANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred --cccCHHHHHHH-HHHHHhCCCCcEEEeCCC----------CH---HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHH
Confidence 112 2222333 333333 4676554221 22 355677788999999876544345788888877
Q ss_pred HHHHHH
Q 007936 441 RSVSLR 446 (584)
Q Consensus 441 ~~I~~~ 446 (584)
.+...+
T Consensus 219 ~~~~~~ 224 (229)
T PLN02334 219 RASVEK 224 (229)
T ss_pred HHHHHH
Confidence 765443
No 106
>PRK06852 aldolase; Validated
Probab=85.51 E-value=19 Score=38.49 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=59.7
Q ss_pred cCCCeEEehhhhHhhhc--CCCCChhhHHHHHHHHHcc------cceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 382 LNKPVIVASQLLESMIE--YPTPTRAEVADVSEAVRQR------ADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 382 ~gKPvivATqmLeSMi~--~p~PTrAEv~Dv~nav~~G------~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
.++|.|+-..-=.++.. .+.|...-+++|-.|++.| +|||..+-=-- +.+=-+.++-+.+++.++++|=.-
T Consensus 91 ~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~E~~ml~~l~~v~~ea~~~GlP 169 (304)
T PRK06852 91 PDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG-SEYESEMLSEAAQIIYEAHKHGLI 169 (304)
T ss_pred CCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCc
Confidence 36787775221111111 0145555568899999999 88887752211 233367888888888888876210
Q ss_pred hhhhhcccCCCCCCCCCc-ChHHHHHHHHHHHHhhcCCcEEEE
Q 007936 454 EKRHEAMELPDVGSSFAE-SISEEICNSAAKMANNLEVDALFV 495 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~-~~~~~ia~sav~~A~~l~a~aIvv 495 (584)
.. -..++ . .....+ .-.+ +...|+++|.+++||.|=+
T Consensus 170 ll-~~~yp-r--G~~i~~~~~~~-~ia~aaRiaaELGADIVKv 207 (304)
T PRK06852 170 AV-LWIYP-R--GKAVKDEKDPH-LIAGAAGVAACLGADFVKV 207 (304)
T ss_pred EE-EEeec-c--CcccCCCccHH-HHHHHHHHHHHHcCCEEEe
Confidence 00 00011 0 111111 1224 4555679999999996644
No 107
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=85.03 E-value=24 Score=38.50 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEE
Q 007936 309 EVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIV 388 (584)
Q Consensus 309 edV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPviv 388 (584)
+....++++.+ + ..+.+++-+-....++-+.+ ++|.+-||-+++.- -.++..+.+.||||++
T Consensus 169 e~l~~L~~~~~--~--~Gl~~~t~v~d~~~~~~l~~---~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVil 230 (360)
T PRK12595 169 EGLKILKQVAD--E--YGLAVISEIVNPADVEVALD---YVDVIQIGARNMQN-----------FELLKAAGRVNKPVLL 230 (360)
T ss_pred HHHHHHHHHHH--H--cCCCEEEeeCCHHHHHHHHH---hCCeEEECcccccC-----------HHHHHHHHccCCcEEE
Confidence 56667777773 2 24788888877776665555 48999999777632 3577788889999999
Q ss_pred ehhhhHhhhcCCCCChhhHHHHHHHHH-cccceEeec
Q 007936 389 ASQLLESMIEYPTPTRAEVADVSEAVR-QRADALMLS 424 (584)
Q Consensus 389 ATqmLeSMi~~p~PTrAEv~Dv~nav~-~G~D~imLs 424 (584)
.|.|. .|-.|+...++.+. .|.+-++|.
T Consensus 231 k~G~~--------~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 231 KRGLS--------ATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred eCCCC--------CCHHHHHHHHHHHHHCCCCCEEEE
Confidence 87543 56788888887776 577556665
No 108
>PLN02591 tryptophan synthase
Probab=84.74 E-value=19 Score=37.19 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=76.6
Q ss_pred hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEE--EeCCcccccCCC
Q 007936 288 DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAM--VARGDLGAQIPL 365 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGIm--IaRGDLg~ei~~ 365 (584)
-++.+.+.|+|++++|=.- .++..++++.++. ..+..|.-+=---.-+.+..|++.++|.+ |+| .|+.=.-
T Consensus 98 F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~----~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvTG~~ 170 (250)
T PLN02591 98 FMATIKEAGVHGLVVPDLP-LEETEALRAEAAK----NGIELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVTGAR 170 (250)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHH----cCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCcCCC
Confidence 3567789999999999764 4777788887742 23555555511122446889999987665 232 2222112
Q ss_pred CChHHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 366 EQVPSAQQKIVQLCRQL-NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 366 e~V~~~Qk~II~~c~~~-gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
..++...+..++.++++ ++|+++-. ..=|+ .|+..+...|+|++...
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vGF---------GI~~~---e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVGF---------GISKP---EHAKQIAGWGADGVIVG 218 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEeC---------CCCCH---HHHHHHHhcCCCEEEEC
Confidence 35566667878888775 89988753 23333 35667778899999875
No 109
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=84.62 E-value=5.3 Score=43.31 Aligned_cols=96 Identities=20% Similarity=0.343 Sum_probs=62.1
Q ss_pred hhhHHhHhcCCCE--EEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEee--cCHHHHhcHHHHHHhCCEEEEeCCccccc
Q 007936 287 LDIDFGITEGVDF--IAISFVKSAEVINHLKSYIAARSRDSDIAVIAKI--ESIDSLKNLEEIILASDGAMVARGDLGAQ 362 (584)
Q Consensus 287 ~dI~~al~~gvD~--I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKI--Et~~av~NldeIl~~sDGImIaRGDLg~e 362 (584)
+.|..-.+.|+|. +++|-.+.++.+.++++.| ...|.+++++|-| .-..|+.-++ .+|.|=|-||.++-+
T Consensus 35 ~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l--~~~g~~iPlVADIHFd~~lAl~a~~----~v~kiRINPGNi~~~ 108 (359)
T PF04551_consen 35 AQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRL--RALGSPIPLVADIHFDYRLALEAIE----AVDKIRINPGNIVDE 108 (359)
T ss_dssp HHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHH--HCTT-SS-EEEEESTTCHHHHHHHH----C-SEEEE-TTTSS--
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhh--ccCCCCCCeeeecCCCHHHHHHHHH----HhCeEEECCCccccc
Confidence 3345556789998 4666667777777777777 4557789999999 5555655433 379999999999632
Q ss_pred C--CCCChHHHHHHHHHHHHHcCCCeEE
Q 007936 363 I--PLEQVPSAQQKIVQLCRQLNKPVIV 388 (584)
Q Consensus 363 i--~~e~V~~~Qk~II~~c~~~gKPviv 388 (584)
+ ....+..--+.++++|+++|+|+=+
T Consensus 109 ~~~~~g~~~~~~~~vv~~ake~~ipIRI 136 (359)
T PF04551_consen 109 FQEELGSIREKVKEVVEAAKERGIPIRI 136 (359)
T ss_dssp --SS-SS-HHHHHHHHHHHHHHT-EEEE
T ss_pred ccccccchHHHHHHHHHHHHHCCCCEEE
Confidence 2 2235677888999999999999644
No 110
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=84.59 E-value=11 Score=41.90 Aligned_cols=161 Identities=17% Similarity=0.251 Sum_probs=81.4
Q ss_pred EEEEeecccCCCCCCCEEEe-cccchhcccCCCCEEEEe--------CCeeEEEEEEEeCCeEEEEEEcCcee-------
Q 007936 193 IWTFTVRAFDSPRPERTITV-NYDGFAEDVKVGDELLVD--------GGMVRFEVIEKIGPDVKCRCTDPGLL------- 256 (584)
Q Consensus 193 ~v~~t~~~~~~~~~~~~i~v-~~~~~~~~v~vGd~I~id--------DG~i~l~V~~~~~~~i~c~v~~~G~l------- 256 (584)
.++|+..+...... ..+|= ++..+.-.++.|++|++- .|..+|.|.+++...+ |.|
T Consensus 36 H~YFtLkD~~a~i~-~vmf~~~~~~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i~~~G~-------G~l~~~~~~l 107 (432)
T TIGR00237 36 HWYFTLKDENAQVR-CVMFRGNNNRLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEMQPAGE-------GLLQLAYEQL 107 (432)
T ss_pred eEEEEEEcCCcEEE-EEEEcChhhCCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEeccCCh-------HHHHHHHHHH
Confidence 57777753211111 12332 233444567899998875 4666777666553211 111
Q ss_pred ---CCCceeeeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEee
Q 007936 257 ---LPRANLTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKI 333 (584)
Q Consensus 257 ---~s~Kgvnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKI 333 (584)
....|+. =|+...++|.++.+ |++==-.+.+-+..+.+.+..+...-++.++.
T Consensus 108 k~~L~~eGlf-------d~~~k~~lP~~p~~---------------i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~-- 163 (432)
T TIGR00237 108 KEKLAAEGLF-------DQEYKKPLPHFPKR---------------VGVITSQTGAALADILHILKRRDPSLKVVIYP-- 163 (432)
T ss_pred HHHHHHCCCC-------CchhcCCCCCCCCE---------------EEEEeCCccHHHHHHHHHHHhhCCCceEEEec--
Confidence 1123333 45666677776532 22222356666777777664322111222211
Q ss_pred cCHHHHhcHHHHHHh---------CCEEEEeCCcccccCCCCC-hHHHHHHHHHHHHHcCCCeEEe
Q 007936 334 ESIDSLKNLEEIILA---------SDGAMVARGDLGAQIPLEQ-VPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 334 Et~~av~NldeIl~~---------sDGImIaRGDLg~ei~~e~-V~~~Qk~II~~c~~~gKPvivA 389 (584)
=..+|-....+|+++ .|.|+|+||-=+. |+ ++.-.+.++++..+...|||.|
T Consensus 164 ~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~----eDL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 164 TLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSL----EDLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred ccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCH----HHhhhcCcHHHHHHHHcCCCCEEEe
Confidence 112222222222222 5999999993211 11 3334456777778889999987
No 111
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=84.06 E-value=22 Score=37.18 Aligned_cols=140 Identities=18% Similarity=0.243 Sum_probs=77.3
Q ss_pred HHhHhcC-CCEEEE------------cCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-----CCE
Q 007936 290 DFGITEG-VDFIAI------------SFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-----SDG 351 (584)
Q Consensus 290 ~~al~~g-vD~I~l------------SfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-----sDG 351 (584)
+.+-+.| +|+|=+ .+-++.+.+.++.+.+++. -++.|++||=- .++++.++++. +|+
T Consensus 111 ~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl~~--~~~~~~~~a~~l~~~G~d~ 185 (301)
T PRK07259 111 EKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV---VKVPVIVKLTP--NVTDIVEIAKAAEEAGADG 185 (301)
T ss_pred HHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh---cCCCEEEEcCC--CchhHHHHHHHHHHcCCCE
Confidence 3444667 898854 2334456666666666422 15789999941 22344444433 688
Q ss_pred EEE-----eCC-cccc-------cC----CCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHH
Q 007936 352 AMV-----ARG-DLGA-------QI----PLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAV 414 (584)
Q Consensus 352 ImI-----aRG-DLg~-------ei----~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav 414 (584)
|.+ ++. |+-. .. |....|...+.+-+.++..+.|+|...- .-| ..|+..++
T Consensus 186 i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GG---------I~~---~~da~~~l 253 (301)
T PRK07259 186 LSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGG---------ISS---AEDAIEFI 253 (301)
T ss_pred EEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECC---------CCC---HHHHHHHH
Confidence 865 211 2210 11 1111233344444444555899987643 223 34667778
Q ss_pred HcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 415 RQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 415 ~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
..|+|++++..---.| | .+.+++....+.|+.
T Consensus 254 ~aGAd~V~igr~ll~~--P----~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 254 MAGASAVQVGTANFYD--P----YAFPKIIEGLEAYLD 285 (301)
T ss_pred HcCCCceeEcHHHhcC--c----HHHHHHHHHHHHHHH
Confidence 8999999997443332 3 456666666666654
No 112
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=84.04 E-value=32 Score=35.74 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 310 VINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 310 dV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
.++.++++.+ + ..+.+++-+-+.+.++-+.+ .+|.+.||-+++. |..+++++.+.||||++.
T Consensus 67 gl~~L~~~~~--~--~Gl~~~Tev~d~~~v~~~~e---~vdilqIgs~~~~-----------n~~LL~~va~tgkPVilk 128 (250)
T PRK13397 67 GIRYLHEVCQ--E--FGLLSVSEIMSERQLEEAYD---YLDVIQVGARNMQ-----------NFEFLKTLSHIDKPILFK 128 (250)
T ss_pred HHHHHHHHHH--H--cCCCEEEeeCCHHHHHHHHh---cCCEEEECccccc-----------CHHHHHHHHccCCeEEEe
Confidence 4666666653 2 34788887777776655555 6899999977763 356788888899999998
Q ss_pred hhhhHhhhcCCCCChhhHHHHHHHHH-cccceEeec
Q 007936 390 SQLLESMIEYPTPTRAEVADVSEAVR-QRADALMLS 424 (584)
Q Consensus 390 TqmLeSMi~~p~PTrAEv~Dv~nav~-~G~D~imLs 424 (584)
|.+ .+|-.|+...++.+. .|..=++|.
T Consensus 129 ~G~--------~~t~~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 129 RGL--------MATIEEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred CCC--------CCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 643 577888888888776 577666666
No 113
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=83.87 E-value=22 Score=37.04 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=75.6
Q ss_pred hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCC
Q 007936 288 DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQ 367 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~ 367 (584)
-++.+.+.|+|+|++|-.- .++..++.+.+++ .| +..+.-|=---..+.+..|++.++|.+-.=+-.|+.=--..
T Consensus 111 F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~--~g--i~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~ 185 (263)
T CHL00200 111 FIKKISQAGVKGLIIPDLP-YEESDYLISVCNL--YN--IELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTE 185 (263)
T ss_pred HHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHH--cC--CCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCcc
Confidence 4677889999999999875 5778888888843 33 33333332222466799999999965543111211111135
Q ss_pred hHHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 368 VPSAQQKIVQLCRQL-NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 368 V~~~Qk~II~~c~~~-gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
++.-.+.+++..+++ ++|+.+- -..=+. .++......|+|++...
T Consensus 186 ~~~~~~~~i~~ir~~t~~Pi~vG---------FGI~~~---e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 186 LDKKLKKLIETIKKMTNKPIILG---------FGISTS---EQIKQIKGWNINGIVIG 231 (263)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEE---------CCcCCH---HHHHHHHhcCCCEEEEC
Confidence 556667777777765 8888764 222233 35566677899999875
No 114
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=83.56 E-value=6.8 Score=42.13 Aligned_cols=141 Identities=16% Similarity=0.254 Sum_probs=78.0
Q ss_pred HhcCCCEEEEcCC----------CCHHHHHHHHHHHHhhcCCC---CceEEEeecCHHHHhcHHHHHHh-----CCEEEE
Q 007936 293 ITEGVDFIAISFV----------KSAEVINHLKSYIAARSRDS---DIAVIAKIESIDSLKNLEEIILA-----SDGAMV 354 (584)
Q Consensus 293 l~~gvD~I~lSfV----------~saedV~~lr~~l~~~~~~~---~i~IiAKIEt~~av~NldeIl~~-----sDGImI 354 (584)
+..++|+|-+.|- +..+.+.++.+.++.. .+. ++.|++||----..+++.++++. +|||.+
T Consensus 166 ~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~-~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~ 244 (344)
T PRK05286 166 LYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA-QAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIA 244 (344)
T ss_pred HHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 3446999877652 3445555555555321 111 48999999632222235555543 688877
Q ss_pred eCCc-----ccc-----cC-CC---CChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHccc
Q 007936 355 ARGD-----LGA-----QI-PL---EQVPSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRA 418 (584)
Q Consensus 355 aRGD-----Lg~-----ei-~~---e~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~ 418 (584)
-=+- +.. .. ++ ..-+...+.+-+.+++. +.|+|-...+. ...|+..++..||
T Consensus 245 ~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~------------s~eda~e~l~aGA 312 (344)
T PRK05286 245 TNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGID------------SAEDAYEKIRAGA 312 (344)
T ss_pred eCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCC
Confidence 5321 100 00 11 11233444444445555 57888765433 3457788888999
Q ss_pred ceEeecCCCCC-CCChHHHHHHHHHHHHHHhhhhh
Q 007936 419 DALMLSGESAM-GQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 419 D~imLs~ETa~-G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
|+|++..-.-. |.+ +.++|+++.++|+.
T Consensus 313 d~V~v~~~~~~~gP~------~~~~i~~~L~~~l~ 341 (344)
T PRK05286 313 SLVQIYSGLIYEGPG------LVKEIVRGLARLLR 341 (344)
T ss_pred CHHHHHHHHHHhCch------HHHHHHHHHHHHHH
Confidence 99999844322 332 45667777777653
No 115
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=83.33 E-value=26 Score=34.10 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=72.1
Q ss_pred hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCcccccC
Q 007936 288 DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGDLGAQI 363 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGDLg~ei 363 (584)
+++.+.+.|+|+|.++.-. .....++... +....+-.-.- +.+|+.+. +|.|.+++-.=+..=
T Consensus 73 ~~~~a~~~gad~vh~~~~~--~~~~~~~~~~-----~~~~~~g~~~~------t~~e~~~a~~~gaD~v~~~~~~~~~~~ 139 (212)
T PRK00043 73 RVDLALAVGADGVHLGQDD--LPVADARALL-----GPDAIIGLSTH------TLEEAAAALAAGADYVGVGPIFPTPTK 139 (212)
T ss_pred hHHHHHHcCCCEEecCccc--CCHHHHHHHc-----CCCCEEEEeCC------CHHHHHHHhHcCCCEEEECCccCCCCC
Confidence 4577889999999887532 1233444332 22233333322 44444433 799988743222211
Q ss_pred CC-C-Ch-HHHHHHHHHHHHHcC-CCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHH
Q 007936 364 PL-E-QV-PSAQQKIVQLCRQLN-KPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTV 439 (584)
Q Consensus 364 ~~-e-~V-~~~Qk~II~~c~~~g-KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~ 439 (584)
+- . .. ....+++.+ ... .||+.+.-+ +. .++..+...|+|++.+.+.-..-..|.++++.
T Consensus 140 ~~~~~~~g~~~~~~~~~---~~~~~~v~a~GGI----------~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~ 203 (212)
T PRK00043 140 KDAKAPQGLEGLREIRA---AVGDIPIVAIGGI----------TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARA 203 (212)
T ss_pred CCCCCCCCHHHHHHHHH---hcCCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHH
Confidence 10 0 01 222233322 334 888876422 22 46677888999999987655445668888888
Q ss_pred HHHHHHH
Q 007936 440 LRSVSLR 446 (584)
Q Consensus 440 m~~I~~~ 446 (584)
+.+.+++
T Consensus 204 l~~~~~~ 210 (212)
T PRK00043 204 LLAAFRA 210 (212)
T ss_pred HHHHHhh
Confidence 7766544
No 116
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=83.25 E-value=15 Score=40.54 Aligned_cols=132 Identities=19% Similarity=0.147 Sum_probs=83.2
Q ss_pred hHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEE-eecCHHHHhcHHHHHHhCCEEEEeC-CcccccCCCC
Q 007936 289 IDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIA-KIESIDSLKNLEEIILASDGAMVAR-GDLGAQIPLE 366 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiA-KIEt~~av~NldeIl~~sDGImIaR-GDLg~ei~~e 366 (584)
++.+.+.|+|++.+..--+.+.+.++.+.++ ..| +.+.. .|.....++.++++....|.|++.+ -|=+.. +
T Consensus 243 v~~~a~aGAD~vTVH~ea~~~ti~~ai~~ak--k~G--ikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~---~ 315 (391)
T PRK13307 243 ARMAADATADAVVISGLAPISTIEKAIHEAQ--KTG--IYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGT---E 315 (391)
T ss_pred HHHHHhcCCCEEEEeccCCHHHHHHHHHHHH--HcC--CEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCCcc---c
Confidence 5567899999999999877778888888884 334 44444 4444445666777766689888886 232211 1
Q ss_pred ChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHH
Q 007936 367 QVPSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVS 444 (584)
Q Consensus 367 ~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~ 444 (584)
. .. ++ ++..++. +.++.++-- =+ ..++..++..|+|.+.+.+--..-..|.++++.+++.+
T Consensus 316 ~--~~-~k-I~~ikk~~~~~~I~VdGG----------I~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 316 H--AW-GN-IKEIKKAGGKILVAVAGG----------VR---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred c--hH-HH-HHHHHHhCCCCcEEEECC----------cC---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 1 11 22 2333333 456666521 11 23467788899999888644333357999988877654
No 117
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=83.11 E-value=37 Score=35.39 Aligned_cols=124 Identities=16% Similarity=0.271 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-----CCEEEEeC---C---cccc-------cC----
Q 007936 306 KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-----SDGAMVAR---G---DLGA-------QI---- 363 (584)
Q Consensus 306 ~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-----sDGImIaR---G---DLg~-------ei---- 363 (584)
++++.+.++.+.++.. .++.|++||-. .+++..++++. +|+|.+.- | |+.. ..
T Consensus 140 ~~~~~~~eiv~~vr~~---~~~pv~vKi~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~s 214 (300)
T TIGR01037 140 QDPELSADVVKAVKDK---TDVPVFAKLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLS 214 (300)
T ss_pred cCHHHHHHHHHHHHHh---cCCCEEEECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCcccc
Confidence 5667777776666422 24789999941 23344444432 69998731 1 2111 00
Q ss_pred CCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHH
Q 007936 364 PLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSV 443 (584)
Q Consensus 364 ~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I 443 (584)
|....+...+.+-+.....+.|+|....+. + ..|+..++..|+|++|+..-.- ..| .+.+++
T Consensus 215 g~~~~~~~l~~v~~i~~~~~ipvi~~GGI~---------s---~~da~~~l~~GAd~V~igr~~l--~~p----~~~~~i 276 (300)
T TIGR01037 215 GPAIKPIALRMVYDVYKMVDIPIIGVGGIT---------S---FEDALEFLMAGASAVQVGTAVY--YRG----FAFKKI 276 (300)
T ss_pred chhhhHHHHHHHHHHHhcCCCCEEEECCCC---------C---HHHHHHHHHcCCCceeecHHHh--cCc----hHHHHH
Confidence 111233344555555556689998754322 2 3566788889999999974322 345 355666
Q ss_pred HHHHhhhhh
Q 007936 444 SLRIEKWWR 452 (584)
Q Consensus 444 ~~~aE~~~~ 452 (584)
..+.++|+.
T Consensus 277 ~~~l~~~~~ 285 (300)
T TIGR01037 277 IEGLIAFLK 285 (300)
T ss_pred HHHHHHHHH
Confidence 666666654
No 118
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=82.89 E-value=24 Score=35.06 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=67.0
Q ss_pred cCHhhhHHhHhcCCCEEEEcCC--CCHHHHHHHHHHHHhhcCCCCceEEEeec---------------CHHHHhcHHHHH
Q 007936 284 KDWLDIDFGITEGVDFIAISFV--KSAEVINHLKSYIAARSRDSDIAVIAKIE---------------SIDSLKNLEEII 346 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSfV--~saedV~~lr~~l~~~~~~~~i~IiAKIE---------------t~~av~NldeIl 346 (584)
.+.++++..++.|+|.|++..- ++++.+.++.+.+ +.+ .|+.-|. ..+.++-++.+.
T Consensus 83 ~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~-----g~~-~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (234)
T cd04732 83 RSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEY-----GGE-RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFE 156 (234)
T ss_pred CCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHc-----CCc-eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHH
Confidence 3477788888999999887643 3334444443332 221 1222121 111222233333
Q ss_pred Hh-CCEEEEe-CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 347 LA-SDGAMVA-RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 347 ~~-sDGImIa-RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+. +|++++- +.--+..-+ .. .+.+-+.++....|++...- .-+.. |+..+...|+|++|+.
T Consensus 157 ~~ga~~iii~~~~~~g~~~g-~~----~~~i~~i~~~~~ipvi~~GG---------i~~~~---di~~~~~~Ga~gv~vg 219 (234)
T cd04732 157 ELGVKAIIYTDISRDGTLSG-PN----FELYKELAAATGIPVIASGG---------VSSLD---DIKALKELGVAGVIVG 219 (234)
T ss_pred HcCCCEEEEEeecCCCccCC-CC----HHHHHHHHHhcCCCEEEecC---------CCCHH---HHHHHHHCCCCEEEEe
Confidence 33 7888774 221222222 12 22333344556899998743 44444 4555556699999997
Q ss_pred CCCCCCCChH
Q 007936 425 GESAMGQFPD 434 (584)
Q Consensus 425 ~ETa~G~yPv 434 (584)
.---.|+++.
T Consensus 220 ~~~~~~~~~~ 229 (234)
T cd04732 220 KALYEGKITL 229 (234)
T ss_pred HHHHcCCCCH
Confidence 5555555543
No 119
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=82.86 E-value=4.8 Score=46.11 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=99.9
Q ss_pred HhhhHHhHhcCCCEE--EEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecC--HHHHhcHHHHHHhCCEEEEeCCcccc
Q 007936 286 WLDIDFGITEGVDFI--AISFVKSAEVINHLKSYIAARSRDSDIAVIAKIES--IDSLKNLEEIILASDGAMVARGDLGA 361 (584)
Q Consensus 286 ~~dI~~al~~gvD~I--~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt--~~av~NldeIl~~sDGImIaRGDLg~ 361 (584)
.+.|....+.|+|.| +++-.+.|+.+.++++.| ...|.+++++|-|-- .-|+.-+ +.+|.|=|-||.++-
T Consensus 48 v~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L--~~~g~~iPLVADIHF~~~~A~~a~----~~vdkiRINPGNi~~ 121 (606)
T PRK00694 48 VRQICALQEWGCDIVRVTVQGLKEAQACEHIKERL--IQQGISIPLVADIHFFPQAAMHVA----DFVDKVRINPGNYVD 121 (606)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHH--hccCCCCCEEeecCCChHHHHHHH----HhcCceEECCcccCC
Confidence 344556667899985 556666677777777776 345678999999933 3333322 338999999999976
Q ss_pred c---------------CCCCChHHHHHHHHHHHHHcCCCeEEehh-------hhHhhhcCCCCChhhH-----HHHHHHH
Q 007936 362 Q---------------IPLEQVPSAQQKIVQLCRQLNKPVIVASQ-------LLESMIEYPTPTRAEV-----ADVSEAV 414 (584)
Q Consensus 362 e---------------i~~e~V~~~Qk~II~~c~~~gKPvivATq-------mLeSMi~~p~PTrAEv-----~Dv~nav 414 (584)
. -.++++..--+.++.+|+++|+|+=+-++ +|+.. . +|..-+ .-+.-+-
T Consensus 122 ~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~y---G-~tpegmVeSAle~~~i~e 197 (606)
T PRK00694 122 KRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRY---G-DTIEGMVYSALEYIEVCE 197 (606)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh---C-CCHHHHHHHHHHHHHHHH
Confidence 1 12345666777899999999999866543 34331 1 232221 2233356
Q ss_pred HcccceEeecCCCCCCCChHHHHHHHHHHHHHHhh
Q 007936 415 RQRADALMLSGESAMGQFPDKALTVLRSVSLRIEK 449 (584)
Q Consensus 415 ~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~ 449 (584)
..|++=+.+|--++ .|...|+.-+.++.+.++
T Consensus 198 ~~~f~diviS~KsS---nv~~mi~AyrlLa~~~d~ 229 (606)
T PRK00694 198 KLDYRDVVFSMKSS---NPKVMVAAYRQLAKDLDA 229 (606)
T ss_pred HCCCCcEEEEEEcC---CHHHHHHHHHHHHHHhhc
Confidence 78899999985544 577788777777777664
No 120
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=82.73 E-value=36 Score=34.69 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=57.4
Q ss_pred cCCCCCccCHhhhHHhHhcCCCEEEE--cC---CCCHHHHHHHH--------------HHHHhhcCCCCceEEEeec-CH
Q 007936 277 MLPTISPKDWLDIDFGITEGVDFIAI--SF---VKSAEVINHLK--------------SYIAARSRDSDIAVIAKIE-SI 336 (584)
Q Consensus 277 ~lp~lt~kD~~dI~~al~~gvD~I~l--Sf---V~saedV~~lr--------------~~l~~~~~~~~i~IiAKIE-t~ 336 (584)
..|.+ +.-.+.++...+.|+|+|=+ || +-+...|.++- +.++.-....+++++.+.. ++
T Consensus 9 G~P~~-~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 9 GDPDL-ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 34544 33345566667789998654 45 55555555322 1121101112455666555 43
Q ss_pred ---HHHhcH-HHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 337 ---DSLKNL-EEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 337 ---~av~Nl-deIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
.|++++ ++..++ +||+++. || |+| -.+.+++.|+++|...+++
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEEE
Confidence 234443 444444 7999995 44 443 4678999999999877654
No 121
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=82.70 E-value=21 Score=34.82 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=67.0
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEE-eecCHHHHhcHHHHHHh-CCEEEEeCCcccccCC
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIA-KIESIDSLKNLEEIILA-SDGAMVARGDLGAQIP 364 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiA-KIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~ 364 (584)
.-++.+++.|++.|-+.+ ++......++.+.++ .+ +..|-+ -|=+ -+++++.+.. +|+++.+-.|
T Consensus 20 ~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~--~~-~~~iGag~v~~---~~~~~~a~~~Ga~~i~~p~~~------ 86 (190)
T cd00452 20 ALAEALIEGGIRAIEITL-RTPGALEAIRALRKE--FP-EALIGAGTVLT---PEQADAAIAAGAQFIVSPGLD------ 86 (190)
T ss_pred HHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHH--CC-CCEEEEEeCCC---HHHHHHHHHcCCCEEEcCCCC------
Confidence 444667889999999986 677777767666532 22 233222 2222 2355666666 7899754222
Q ss_pred CCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 365 LEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 365 ~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
..+++.|+..|.|++.- -.-.+++..|...|+|.+.+.
T Consensus 87 --------~~~~~~~~~~~~~~i~g--------------v~t~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 --------PEVVKAANRAGIPLLPG--------------VATPTEIMQALELGADIVKLF 124 (190)
T ss_pred --------HHHHHHHHHcCCcEECC--------------cCCHHHHHHHHHCCCCEEEEc
Confidence 36889999999997742 123355678888999999984
No 122
>PRK15452 putative protease; Provisional
Probab=82.68 E-value=10 Score=42.36 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=69.2
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCC----------CCHHHHHHHHHHHHhhcCCCCceEEEe---ecCHHHHhcH----HH
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFV----------KSAEVINHLKSYIAARSRDSDIAVIAK---IESIDSLKNL----EE 344 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV----------~saedV~~lr~~l~~~~~~~~i~IiAK---IEt~~av~Nl----de 344 (584)
+-.+.+.++.|++.|+|.|.+.+- -+.+|+.++.+++. ..| .+++.. |=..+-++.+ +.
T Consensus 9 pag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah--~~g--~kvyvt~n~i~~e~el~~~~~~l~~ 84 (443)
T PRK15452 9 PAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAH--ALG--KKFYVVVNIAPHNAKLKTFIRDLEP 84 (443)
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHH--HcC--CEEEEEecCcCCHHHHHHHHHHHHH
Confidence 346788999999999999999321 24588888888874 334 344443 2222333333 44
Q ss_pred HHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceE
Q 007936 345 IILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADAL 421 (584)
Q Consensus 345 Il~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~i 421 (584)
+.+. .|||+|+ |+| ++..+++. +.|+...||+-- +-.+ .+-.+-..|++.+
T Consensus 85 l~~~gvDgvIV~--d~G--------------~l~~~ke~~p~l~ih~stqlni--------~N~~--a~~f~~~lG~~rv 138 (443)
T PRK15452 85 VIAMKPDALIMS--DPG--------------LIMMVREHFPEMPIHLSVQANA--------VNWA--TVKFWQQMGLTRV 138 (443)
T ss_pred HHhCCCCEEEEc--CHH--------------HHHHHHHhCCCCeEEEEecccC--------CCHH--HHHHHHHCCCcEE
Confidence 4444 7999995 433 23444443 779999998630 1111 1222334577777
Q ss_pred eecCCCC
Q 007936 422 MLSGESA 428 (584)
Q Consensus 422 mLs~ETa 428 (584)
.||-|-+
T Consensus 139 vLSrELs 145 (443)
T PRK15452 139 ILSRELS 145 (443)
T ss_pred EECCcCC
Confidence 7776653
No 123
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=82.66 E-value=50 Score=32.23 Aligned_cols=136 Identities=12% Similarity=0.163 Sum_probs=77.1
Q ss_pred hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCH-HHHhcHHHHHH-hCCEEEEeCCcccccCCC
Q 007936 288 DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESI-DSLKNLEEIIL-ASDGAMVARGDLGAQIPL 365 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~-~av~NldeIl~-~sDGImIaRGDLg~ei~~ 365 (584)
+++.+.+.|+|+|.+++..+...+.++.+.++ +. .+++++-+-++ .-.+.+....+ -+|.+-+.+|-=+-..+.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~--~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~ 143 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAK--KH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQ 143 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHH--Hc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCC
Confidence 67888999999999998877667788888774 22 35666554222 12233344444 389888876522222222
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHH
Q 007936 366 EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSV 443 (584)
Q Consensus 366 e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I 443 (584)
..+ +++-+..+....+.+.++ .. -+. ..+..+...|+|++.+.+.-..-.-|.++++.++++
T Consensus 144 ~~~----~~i~~l~~~~~~~~i~v~--------GG-I~~---~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 144 NPF----EDLQTILKLVKEARVAVA--------GG-INL---DTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred CCH----HHHHHHHHhcCCCcEEEE--------CC-cCH---HHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 121 222222333333444321 12 233 234566788999999865533335688888777654
No 124
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=82.61 E-value=19 Score=38.39 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=68.5
Q ss_pred CHhhhHHhHhcCCCEEEEcCCCC-HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCccccc
Q 007936 285 DWLDIDFGITEGVDFIAISFVKS-AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQ 362 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV~s-aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~e 362 (584)
....+...++.++++|.++|=.- .+.++++++ ..+++|.++-|.+... ..++. +|+|++-=.+=|-+
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~--------~gi~v~~~v~s~~~A~---~a~~~G~D~iv~qG~eAGGH 170 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHA--------AGIKVIPQVTSVREAR---KAAKAGADAIVAQGPEAGGH 170 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHH--------TT-EEEEEESSHHHHH---HHHHTT-SEEEEE-TTSSEE
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHH--------cCCccccccCCHHHHH---HhhhcCCCEEEEeccccCCC
Confidence 45667888999999999999776 444444432 2489999998876654 33333 89988764455555
Q ss_pred CCC--CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 363 IPL--EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 363 i~~--e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
.+. +.......++.+ ...+|||.|--+- .-.+++.++..|+|++.+.
T Consensus 171 ~g~~~~~~~~L~~~v~~---~~~iPViaAGGI~------------dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 171 RGFEVGSTFSLLPQVRD---AVDIPVIAAGGIA------------DGRGIAAALALGADGVQMG 219 (330)
T ss_dssp ---SSG-HHHHHHHHHH---H-SS-EEEESS--------------SHHHHHHHHHCT-SEEEES
T ss_pred CCccccceeeHHHHHhh---hcCCcEEEecCcC------------CHHHHHHHHHcCCCEeecC
Confidence 552 124444444443 4459999996543 3457889999999999984
No 125
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=82.48 E-value=3.4 Score=49.38 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHHhhcC--C----CCceEEEeecCHHHHhcHHHHHHhC----------------CEEEE
Q 007936 297 VDFIAISFVKSAEVINHLKSYIAARSR--D----SDIAVIAKIESIDSLKNLEEIILAS----------------DGAMV 354 (584)
Q Consensus 297 vD~I~lSfV~saedV~~lr~~l~~~~~--~----~~i~IiAKIEt~~av~NldeIl~~s----------------DGImI 354 (584)
+.-.++|+.+++.||.++--+.+..+. + ..+.|+.-.||.+.++|..+|++.. =-||+
T Consensus 364 ~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMl 443 (794)
T PF00311_consen 364 IGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVML 443 (794)
T ss_dssp EEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEE
T ss_pred HHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEe
Confidence 335799999999999999988854222 1 2478999999999999999999871 17999
Q ss_pred eCCcccccCCCC----ChHHHHHHHHHHHHHcCCCeEEe
Q 007936 355 ARGDLGAQIPLE----QVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 355 aRGDLg~ei~~e----~V~~~Qk~II~~c~~~gKPvivA 389 (584)
|-.|=+=+-|.- .+..+|+.+.+.|+++|+.+.+.
T Consensus 444 GYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~F 482 (794)
T PF00311_consen 444 GYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFF 482 (794)
T ss_dssp ECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEE
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 988866666652 68899999999999999987764
No 126
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=82.43 E-value=28 Score=37.23 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=38.7
Q ss_pred CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC---CCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 383 NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG---ESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 383 gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~---ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
+.|+|.+.-+- .-.|+..++..|||+++++. ..... -+..+.+++..+..+...++.
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~ 314 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMF 314 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 68988775433 34789999999999999975 21222 344555677777777766553
No 127
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=82.36 E-value=22 Score=35.49 Aligned_cols=159 Identities=16% Similarity=0.239 Sum_probs=92.7
Q ss_pred CCccCHhhhH-HhHhcCCCEEEEc-CCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhc-HHHHHHh-CCEEEE--
Q 007936 281 ISPKDWLDID-FGITEGVDFIAIS-FVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKN-LEEIILA-SDGAMV-- 354 (584)
Q Consensus 281 lt~kD~~dI~-~al~~gvD~I~lS-fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~N-ldeIl~~-sDGImI-- 354 (584)
++..++..|- .-.+.|+|.|=+. ..-+.++...++.+.+... +..+..+... ..+.++. ++.+... .|.+.+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~-~~~~i~~~~~~~~~~g~~~i~i~~ 88 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALP-NARLQALCRA-NEEDIERAVEAAKEAGIDIIRIFI 88 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHH-SSEEEEEEES-CHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhc-ccccceeeee-hHHHHHHHHHhhHhccCCEEEecC
Confidence 3555555554 4457899999888 4566777777776664322 1223333332 2222333 2222223 564444
Q ss_pred eCCccccc----CCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHH-cccceEeecCCCCC
Q 007936 355 ARGDLGAQ----IPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR-QRADALMLSGESAM 429 (584)
Q Consensus 355 aRGDLg~e----i~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~-~G~D~imLs~ETa~ 429 (584)
.-.|+-.. ...++......++++.++++|..|.+.. ....+.+.+++.+++..+. .|+|.+.|. +|.=
T Consensus 89 ~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~G 161 (237)
T PF00682_consen 89 SVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC------EDASRTDPEELLELAEALAEAGADIIYLA-DTVG 161 (237)
T ss_dssp ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE------TTTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETTS
T ss_pred cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc------cccccccHHHHHHHHHHHHHcCCeEEEee-CccC
Confidence 33331111 1123455666788999999999997753 2334567788888888665 499999997 7877
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 007936 430 GQFPDKALTVLRSVSLRIE 448 (584)
Q Consensus 430 G~yPveaV~~m~~I~~~aE 448 (584)
.-.|.++-+.++.+-++.-
T Consensus 162 ~~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 162 IMTPEDVAELVRALREALP 180 (237)
T ss_dssp -S-HHHHHHHHHHHHHHST
T ss_pred CcCHHHHHHHHHHHHHhcc
Confidence 7889988877777755443
No 128
>PLN02826 dihydroorotate dehydrogenase
Probab=82.10 E-value=36 Score=37.78 Aligned_cols=142 Identities=16% Similarity=0.271 Sum_probs=78.0
Q ss_pred HhcCCCEEEEcC----------CCCHHHHHHHHHHHHhh-c-----CCCCceEEEeecCHHHHhcHHHHHHh-----CCE
Q 007936 293 ITEGVDFIAISF----------VKSAEVINHLKSYIAAR-S-----RDSDIAVIAKIESIDSLKNLEEIILA-----SDG 351 (584)
Q Consensus 293 l~~gvD~I~lSf----------V~saedV~~lr~~l~~~-~-----~~~~i~IiAKIEt~~av~NldeIl~~-----sDG 351 (584)
+...+|+|-+.. -+..+.+.++.+.++.. . ...+++|+.||=--..-+++++|++. +||
T Consensus 213 ~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dG 292 (409)
T PLN02826 213 LSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDG 292 (409)
T ss_pred HhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCE
Confidence 344599976542 23344555554444321 0 11358999999322222344555543 799
Q ss_pred EEEe-----C-Cccc-----ccC-CC---CChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHH
Q 007936 352 AMVA-----R-GDLG-----AQI-PL---EQVPSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAV 414 (584)
Q Consensus 352 ImIa-----R-GDLg-----~ei-~~---e~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav 414 (584)
|++. | +|+- .+. |+ .--+...+.+-...++. ..|+|-.+-+. .-.|++.++
T Consensus 293 Ii~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~------------sg~Da~e~i 360 (409)
T PLN02826 293 LIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVS------------SGEDAYKKI 360 (409)
T ss_pred EEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCC------------CHHHHHHHH
Confidence 9875 3 2331 111 11 12334444444444555 46777765443 357899999
Q ss_pred HcccceEeecCCCCC-CCChHHHHHHHHHHHHHHhhhhh
Q 007936 415 RQRADALMLSGESAM-GQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 415 ~~G~D~imLs~ETa~-G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
..||+++.+..---. | | .++++|.++.++|+.
T Consensus 361 ~AGAs~VQv~Ta~~~~G--p----~~i~~I~~eL~~~l~ 393 (409)
T PLN02826 361 RAGASLVQLYTAFAYEG--P----ALIPRIKAELAACLE 393 (409)
T ss_pred HhCCCeeeecHHHHhcC--H----HHHHHHHHHHHHHHH
Confidence 999999999632111 2 3 466777777776654
No 129
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=82.03 E-value=31 Score=35.78 Aligned_cols=162 Identities=12% Similarity=0.159 Sum_probs=90.5
Q ss_pred cCCcccCCccccCCCCCccCHhhh-HHhHhcCCCEEEEcC-CCCHHHHHHHHHHHHhhcCCCCceEEEe-ecCHHHHhcH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDI-DFGITEGVDFIAISF-VKSAEVINHLKSYIAARSRDSDIAVIAK-IESIDSLKNL 342 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI-~~al~~gvD~I~lSf-V~saedV~~lr~~l~~~~~~~~i~IiAK-IEt~~av~Nl 342 (584)
|||-+.++..+ |..++..| +.-.+.|+|.|=+.+ --++++...++.+. .. +....+.+- .-+.+++
T Consensus 9 RDG~Q~~~~~~-----s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~-~~--~~~~~v~~~~r~~~~di--- 77 (262)
T cd07948 9 REGEQFANAFF-----DTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIA-KL--GLKAKILTHIRCHMDDA--- 77 (262)
T ss_pred CCcCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHH-hC--CCCCcEEEEecCCHHHH---
Confidence 55555666433 44444444 455678999997743 33444444444433 22 222444433 2233332
Q ss_pred HHHHHh-CCEEEE--eCCccc----ccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHH
Q 007936 343 EEIILA-SDGAMV--ARGDLG----AQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR 415 (584)
Q Consensus 343 deIl~~-sDGImI--aRGDLg----~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~ 415 (584)
+..++. .|.|.+ +-.|.- .-...++.....+.+++.++.+|..|.+.-. ++ -+-+...+.+++..+.
T Consensus 78 ~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e--da----~r~~~~~l~~~~~~~~ 151 (262)
T cd07948 78 RIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE--DS----FRSDLVDLLRVYRAVD 151 (262)
T ss_pred HHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE--ee----CCCCHHHHHHHHHHHH
Confidence 222323 464444 212210 0122356666778889999999988877521 11 1122455666666544
Q ss_pred -cccceEeecCCCCCCCChHHHHHHHHHHHH
Q 007936 416 -QRADALMLSGESAMGQFPDKALTVLRSVSL 445 (584)
Q Consensus 416 -~G~D~imLs~ETa~G~yPveaV~~m~~I~~ 445 (584)
.|+|.+.|. +|.=..+|.++-++++.+-+
T Consensus 152 ~~g~~~i~l~-Dt~G~~~P~~v~~~~~~~~~ 181 (262)
T cd07948 152 KLGVNRVGIA-DTVGIATPRQVYELVRTLRG 181 (262)
T ss_pred HcCCCEEEEC-CcCCCCCHHHHHHHHHHHHH
Confidence 499999887 78888899998888877743
No 130
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=81.82 E-value=12 Score=42.19 Aligned_cols=128 Identities=19% Similarity=0.154 Sum_probs=78.2
Q ss_pred CCCccCHhhhHHhHhcCCCEEEE--cCCCCHHHHHHHHHHHHhhcCCCCceEEEe-ecCHHHHhcHHHHHHhCCEEEEeC
Q 007936 280 TISPKDWLDIDFGITEGVDFIAI--SFVKSAEVINHLKSYIAARSRDSDIAVIAK-IESIDSLKNLEEIILASDGAMVAR 356 (584)
Q Consensus 280 ~lt~kD~~dI~~al~~gvD~I~l--SfV~saedV~~lr~~l~~~~~~~~i~IiAK-IEt~~av~NldeIl~~sDGImIaR 356 (584)
.+.+.+.+-++.-++.|+|.|++ +.-++ +.+.++.+.++.. -.++.||+= +-|.++..+|.+. =+|+|-||=
T Consensus 221 ~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~--~~~~~vi~g~~~t~~~~~~l~~~--G~d~i~vg~ 295 (475)
T TIGR01303 221 GINGDVGGKAKALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRAL--DLGVPIVAGNVVSAEGVRDLLEA--GANIIKVGV 295 (475)
T ss_pred eeCccHHHHHHHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHH--CCCCeEEEeccCCHHHHHHHHHh--CCCEEEECC
Confidence 34556666677778999999886 34333 4445545555321 235788887 8888887776642 378887553
Q ss_pred Cc--ccc-----cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC
Q 007936 357 GD--LGA-----QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG 425 (584)
Q Consensus 357 GD--Lg~-----ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ 425 (584)
|- -.. ..+.+. ..+--...+.|++.|+|+|--- ...+ -.|++.|+..|||++|+.+
T Consensus 296 g~Gs~~ttr~~~~~g~~~-~~a~~~~~~~~~~~~~~viadG---------gi~~---~~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQ-FSAVLECAAEARKLGGHVWADG---------GVRH---PRDVALALAAGASNVMVGS 358 (475)
T ss_pred cCCccccCccccCCCCch-HHHHHHHHHHHHHcCCcEEEeC---------CCCC---HHHHHHHHHcCCCEEeech
Confidence 31 110 111111 2223345556678899988532 2222 3799999999999999963
No 131
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=81.79 E-value=25 Score=34.87 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=71.7
Q ss_pred hhHHhHhcCCCEEEEcCCC-CHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCC
Q 007936 288 DIDFGITEGVDFIAISFVK-SAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPL 365 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~-saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~ 365 (584)
.++.+.+.|+|+|.+.-.- ..++++++.+... .. .+..++-+-+.+- +.++.+. +|.+.+..-|.... +
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~--~~--g~~~~v~v~~~~e---~~~~~~~g~~~i~~t~~~~~~~-~- 156 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDDEQLKELYELAR--EL--GMEVLVEVHDEEE---LERALALGAKIIGINNRDLKTF-E- 156 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHH--Hc--CCeEEEEECCHHH---HHHHHHcCCCEEEEeCCCcccc-C-
Confidence 5788899999999854321 1245555544442 22 2444555544433 4444444 78888885554322 2
Q ss_pred CChHHHHHHHHHHHHH--cCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHH
Q 007936 366 EQVPSAQQKIVQLCRQ--LNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALT 438 (584)
Q Consensus 366 e~V~~~Qk~II~~c~~--~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~ 438 (584)
..+ +.+-+.++. .++|++...- .=+. .|+..+...|+|++++..--.....|.++++
T Consensus 157 ~~~----~~~~~l~~~~~~~~pvia~gG---------I~s~---edi~~~~~~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 157 VDL----NTTERLAPLIPKDVILVSESG---------ISTP---EDVKRLAEAGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred cCH----HHHHHHHHhCCCCCEEEEEcC---------CCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 122 233333444 3678875432 2222 4566677779999999766555566777665
No 132
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=81.71 E-value=29 Score=37.67 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=97.5
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHh-HhcCCCEEEEcCCCC-HHHHHHHHHHHHhhcCCCCceEEEee-cCHHHHhcH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFG-ITEGVDFIAISFVKS-AEVINHLKSYIAARSRDSDIAVIAKI-ESIDSLKNL 342 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~a-l~~gvD~I~lSfV~s-aedV~~lr~~l~~~~~~~~i~IiAKI-Et~~av~Nl 342 (584)
|||.+.++. .+|..++..|... .+.|+|.|=+.|-.. ..+.+.++.+.+ . +....+.+-. -+.+. +
T Consensus 10 RDG~Q~~~~-----~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~--~~~~~i~~~~r~~~~d---i 78 (365)
T TIGR02660 10 RDGEQAPGV-----AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVA-L--GLPARLMAWCRARDAD---I 78 (365)
T ss_pred CCcCcCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHH-c--CCCcEEEEEcCCCHHH---H
Confidence 555555553 3466666666544 568999997765443 334455555442 1 2234555544 23333 3
Q ss_pred HHHHHh-CCEEEE--eCCccccc----CCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHH-HH
Q 007936 343 EEIILA-SDGAMV--ARGDLGAQ----IPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE-AV 414 (584)
Q Consensus 343 deIl~~-sDGImI--aRGDLg~e----i~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av 414 (584)
+..++. .|.|.+ +-.|+-.+ ...++.....+..++.++++|..|-+. .....+-+...+.+++. +.
T Consensus 79 ~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~~~~ 152 (365)
T TIGR02660 79 EAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG------GEDASRADPDFLVELAEVAA 152 (365)
T ss_pred HHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe------ecCCCCCCHHHHHHHHHHHH
Confidence 333433 464433 33332111 122344555567889999999887764 22344555566666665 45
Q ss_pred HcccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 415 RQRADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 415 ~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
..|+|.+.|. +|.=...|.+.-+.++.+....
T Consensus 153 ~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 153 EAGADRFRFA-DTVGILDPFSTYELVRALRQAV 184 (365)
T ss_pred HcCcCEEEEc-ccCCCCCHHHHHHHHHHHHHhc
Confidence 5799999987 8888899999999988887654
No 133
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=81.44 E-value=26 Score=36.79 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=70.6
Q ss_pred CCCccCHhhh--------HHhHhcCCCEEEEcCC-------------CCHHH------------HHHHHHHHHhhcCCCC
Q 007936 280 TISPKDWLDI--------DFGITEGVDFIAISFV-------------KSAEV------------INHLKSYIAARSRDSD 326 (584)
Q Consensus 280 ~lt~kD~~dI--------~~al~~gvD~I~lSfV-------------~saed------------V~~lr~~l~~~~~~~~ 326 (584)
.+|..|++.+ +.+.+.|+|+|=+-.- +...| +.++.+.++ ...+.+
T Consensus 130 ~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr-~~~g~d 208 (327)
T cd02803 130 EMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVR-EAVGPD 208 (327)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHH-HHcCCC
Confidence 4677776666 5677889999876543 22122 222222222 223567
Q ss_pred ceEEEeecCH----------HHHhcHHHHHHh-CCEEEEeCCcccccCCC----CChHHHHHHHHHH-HHHcCCCeEEeh
Q 007936 327 IAVIAKIESI----------DSLKNLEEIILA-SDGAMVARGDLGAQIPL----EQVPSAQQKIVQL-CRQLNKPVIVAS 390 (584)
Q Consensus 327 i~IiAKIEt~----------~av~NldeIl~~-sDGImIaRGDLg~ei~~----e~V~~~Qk~II~~-c~~~gKPvivAT 390 (584)
..|..||--. ++++-+..+.+. .|.|-+..|+..-.... ..-.......++. .+..+.|++...
T Consensus 209 ~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G 288 (327)
T cd02803 209 FPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVG 288 (327)
T ss_pred ceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeC
Confidence 8899998632 222223333333 79998887765322110 0001122233333 334589988764
Q ss_pred hhhHhhhcCCCCChhhHHHHHHHHHc-ccceEeec
Q 007936 391 QLLESMIEYPTPTRAEVADVSEAVRQ-RADALMLS 424 (584)
Q Consensus 391 qmLeSMi~~p~PTrAEv~Dv~nav~~-G~D~imLs 424 (584)
.+ -|. .++..++.. |+|.|++.
T Consensus 289 gi---------~t~---~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 289 GI---------RDP---EVAEEILAEGKADLVALG 311 (327)
T ss_pred CC---------CCH---HHHHHHHHCCCCCeeeec
Confidence 32 223 345666777 79999986
No 134
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=81.42 E-value=62 Score=33.32 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=97.0
Q ss_pred cCCcccCCccccCCCCCccCHhhhH-HhHhcCCCEEEE-cCCCCHHHHHHHHHHHHhhcCCCCceEEEee-cCHHHHhcH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDID-FGITEGVDFIAI-SFVKSAEVINHLKSYIAARSRDSDIAVIAKI-ESIDSLKNL 342 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~-~al~~gvD~I~l-SfV~saedV~~lr~~l~~~~~~~~i~IiAKI-Et~~av~Nl 342 (584)
|||-+.++. .++..++..|. .-.+.|++.|=+ +|+.+++|.+.++.+.+. ..+..+.+-+ -+.+. +
T Consensus 7 RDG~Q~~~~-----~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~---~~~~~~~~l~r~~~~~---v 75 (268)
T cd07940 7 RDGEQTPGV-----SLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIARE---VLNAEICGLARAVKKD---I 75 (268)
T ss_pred CccccCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHh---CCCCEEEEEccCCHhh---H
Confidence 455545543 33555555554 445789999876 455578887666655421 2345666655 23333 3
Q ss_pred HHHHHh-----CCEEEEe--CCccc----ccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHH
Q 007936 343 EEIILA-----SDGAMVA--RGDLG----AQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVS 411 (584)
Q Consensus 343 deIl~~-----sDGImIa--RGDLg----~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~ 411 (584)
+..++. .|.|-+. -.|.- .....++....-+.+++.|+++|..|.+. ....++-+.+.+.+++
T Consensus 76 ~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~------~~~~~~~~~~~~~~~~ 149 (268)
T cd07940 76 DAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFS------AEDATRTDLDFLIEVV 149 (268)
T ss_pred HHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEe------eecCCCCCHHHHHHHH
Confidence 444433 4544442 11211 01122334455567888999999887753 2233445666666666
Q ss_pred HH-HHcccceEeecCCCCCCCChHHHHHHHHHHHHH
Q 007936 412 EA-VRQRADALMLSGESAMGQFPDKALTVLRSVSLR 446 (584)
Q Consensus 412 na-v~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~ 446 (584)
.. ...|+|.+.|. +|.=..+|.+.-+.++.+-+.
T Consensus 150 ~~~~~~G~~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 150 EAAIEAGATTINIP-DTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred HHHHHcCCCEEEEC-CCCCCCCHHHHHHHHHHHHHh
Confidence 54 55799999997 777778999999888887543
No 135
>PRK04302 triosephosphate isomerase; Provisional
Probab=81.26 E-value=36 Score=34.09 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=76.4
Q ss_pred hHHhHhcCCCEEEEcCC---CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCc-ccccC
Q 007936 289 IDFGITEGVDFIAISFV---KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGD-LGAQI 363 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV---~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGD-Lg~ei 363 (584)
++...+.|+|+|+++.- ...+++.+..+.++ .. .+..|.-+-+ .+.+..+.+. .|.|-+.+-+ .|...
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~--~~--Gl~~I~~v~~---~~~~~~~~~~~~~~I~~~p~~~igt~~ 150 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAK--KL--GLESVVCVNN---PETSAAAAALGPDYVAVEPPELIGTGI 150 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHH--HC--CCeEEEEcCC---HHHHHHHhcCCCCEEEEeCccccccCC
Confidence 56677899999999986 33444544444442 22 3555544444 3344444444 3555554433 34333
Q ss_pred CCC-ChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHH
Q 007936 364 PLE-QVPSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTV 439 (584)
Q Consensus 364 ~~e-~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~ 439 (584)
+.. ..+..-+++++..++. +.|++..- ..=+ -.++..+...|+|+++..+....-..|.+.++-
T Consensus 151 ~~~~~~~~~i~~~~~~ir~~~~~~pvi~Gg---------gI~~---~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~ 217 (223)
T PRK04302 151 PVSKAKPEVVEDAVEAVKKVNPDVKVLCGA---------GIST---GEDVKAALELGADGVLLASGVVKAKDPEAALRD 217 (223)
T ss_pred CCCcCCHHHHHHHHHHHHhccCCCEEEEEC---------CCCC---HHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHH
Confidence 322 3345556667777764 57877541 1222 345566777999999998776666666666553
No 136
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=81.17 E-value=37 Score=38.92 Aligned_cols=170 Identities=16% Similarity=0.167 Sum_probs=106.2
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHh-HhcCCCEEEEcC-CCCHHHHHHHHHHHHhhcCCCCceEEEeecC-HHHH---
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFG-ITEGVDFIAISF-VKSAEVINHLKSYIAARSRDSDIAVIAKIES-IDSL--- 339 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~a-l~~gvD~I~lSf-V~saedV~~lr~~l~~~~~~~~i~IiAKIEt-~~av--- 339 (584)
|||.+-|+.. +|..++..|... .+.|+|.|=+-| .-++.|...++.+.+. .. .+..|.+..=+ ...+
T Consensus 10 RDG~Q~~g~~-----~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~-~~-~~~~i~~~~r~~r~~~~~~ 82 (526)
T TIGR00977 10 RDGAQREGVS-----FSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEM-NF-KNAKIVAFCSTRRPHKKVE 82 (526)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHh-CC-CCcEEEEEeeecCCCCCCc
Confidence 5666666653 466677666555 468999997754 3468888888887742 22 23556555421 2221
Q ss_pred --hcHHHHHHh-CCEE--EEeCCccccc----CCCCChHHHHHHHHHHHHHcCCCeEE-ehhhhHhhhcCCCCChhhHHH
Q 007936 340 --KNLEEIILA-SDGA--MVARGDLGAQ----IPLEQVPSAQQKIVQLCRQLNKPVIV-ASQLLESMIEYPTPTRAEVAD 409 (584)
Q Consensus 340 --~NldeIl~~-sDGI--mIaRGDLg~e----i~~e~V~~~Qk~II~~c~~~gKPviv-ATqmLeSMi~~p~PTrAEv~D 409 (584)
..++..+.. .+.| ++.-.|+-.+ ...+++.......++.++.+|..|.+ ++.+.+.. +-+...+.+
T Consensus 83 ~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~ 158 (526)
T TIGR00977 83 EDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALA 158 (526)
T ss_pred hHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHH
Confidence 124444444 4533 3333343322 23356777778889999999998854 44332221 223444566
Q ss_pred HHHH-HHcccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 410 VSEA-VRQRADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 410 v~na-v~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
++.+ ...|+|.+.|. +|.=+..|.+.-..+..+.+..
T Consensus 159 ~~~~a~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~ 196 (526)
T TIGR00977 159 TLATAQQAGADWLVLC-DTNGGTLPHEISEITTKVKRSL 196 (526)
T ss_pred HHHHHHhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhC
Confidence 6664 56699999998 8988999999999988887654
No 137
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=80.84 E-value=27 Score=41.12 Aligned_cols=151 Identities=13% Similarity=0.196 Sum_probs=96.6
Q ss_pred HhhhHHhHhcCCCEE--EEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeec--CHHHHhcHHHHHHhCCEEEEeCCcccc
Q 007936 286 WLDIDFGITEGVDFI--AISFVKSAEVINHLKSYIAARSRDSDIAVIAKIE--SIDSLKNLEEIILASDGAMVARGDLGA 361 (584)
Q Consensus 286 ~~dI~~al~~gvD~I--~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIE--t~~av~NldeIl~~sDGImIaRGDLg~ 361 (584)
.+.|....+.|+|.| +++-.+.|+.+.++++.| ...+.+++++|-|- -.-|+ +-++.+|.|=|-||.++-
T Consensus 113 v~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L--~~~g~~iPLVADIHF~~~~Al----~a~~~vdkiRINPGN~~~ 186 (733)
T PLN02925 113 VDQVMRIADKGADIVRITVQGKKEADACFEIKNTL--VQKGYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNFAD 186 (733)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHH--hhcCCCCCEEEecCCCHHHHH----HHHHhcCCeEECCcccCC
Confidence 344556667899985 555666666777777766 34466799999993 33344 233348999999999987
Q ss_pred cC---------------CCCChHHHHHHHHHHHHHcCCCeEEehh-------hhHhhhcCCCCChhh-----HHHHHHHH
Q 007936 362 QI---------------PLEQVPSAQQKIVQLCRQLNKPVIVASQ-------LLESMIEYPTPTRAE-----VADVSEAV 414 (584)
Q Consensus 362 ei---------------~~e~V~~~Qk~II~~c~~~gKPvivATq-------mLeSMi~~p~PTrAE-----v~Dv~nav 414 (584)
.- .++++..--..++.+|+++|+|+=+-++ +|+. +. +|..- ..-+.-+-
T Consensus 187 ~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~---yG-dtp~gmVeSAle~~~i~e 262 (733)
T PLN02925 187 RRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSY---YG-DSPRGMVESAFEFARICR 262 (733)
T ss_pred ccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHH---hC-CChHHHHHHHHHHHHHHH
Confidence 62 1123333344799999999999866542 3322 11 12111 12233356
Q ss_pred HcccceEeecCCCCCCCChHHHHHHHHHHHHHHhh
Q 007936 415 RQRADALMLSGESAMGQFPDKALTVLRSVSLRIEK 449 (584)
Q Consensus 415 ~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~ 449 (584)
..|++=+.+|--.+ .|...|...+.+..+.++
T Consensus 263 ~~~f~diviS~KsS---n~~~~V~AyR~La~~L~~ 294 (733)
T PLN02925 263 KLDYHNFVFSMKAS---NPVVMVQAYRLLVAEMYV 294 (733)
T ss_pred HCCCCcEEEEEEcC---ChHHHHHHHHHHHHHHHh
Confidence 78999999985544 577777777777777554
No 138
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=80.79 E-value=56 Score=35.21 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=89.3
Q ss_pred CCccCHhhhHHh-HhcCCCEEEE---------cCC-C--CHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHH--
Q 007936 281 ISPKDWLDIDFG-ITEGVDFIAI---------SFV-K--SAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEI-- 345 (584)
Q Consensus 281 lt~kD~~dI~~a-l~~gvD~I~l---------SfV-~--saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeI-- 345 (584)
++..++..|..+ .+.|+|.|=+ ||. . ...+.+.++.+.+. ..+.++.+.+- -+.-+++++
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~---~~~~~~~~ll~--pg~~~~~dl~~ 96 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV---VKQAKIAALLL--PGIGTVDDLKM 96 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh---CCCCEEEEEec--cCcccHHHHHH
Confidence 355666666555 4689999977 443 1 11133344443321 12355555442 112233333
Q ss_pred -HHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHH-HHcccceEe
Q 007936 346 -ILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEA-VRQRADALM 422 (584)
Q Consensus 346 -l~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~na-v~~G~D~im 422 (584)
.+. .|.|-|+ ....+. ..-++.++.++++|.-|.+. +.. ....+.+++.+.+.. ...|+|++.
T Consensus 97 a~~~gvd~iri~-------~~~~e~-~~~~~~i~~ak~~G~~v~~~--l~~----a~~~~~e~l~~~a~~~~~~Ga~~i~ 162 (337)
T PRK08195 97 AYDAGVRVVRVA-------THCTEA-DVSEQHIGLARELGMDTVGF--LMM----SHMAPPEKLAEQAKLMESYGAQCVY 162 (337)
T ss_pred HHHcCCCEEEEE-------EecchH-HHHHHHHHHHHHCCCeEEEE--EEe----ccCCCHHHHHHHHHHHHhCCCCEEE
Confidence 333 5777765 123333 24588999999999987764 222 246677888877764 556999998
Q ss_pred ecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 423 LSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 423 Ls~ETa~G~yPveaV~~m~~I~~~a 447 (584)
+. +|+=..+|.++-+..+.+-.+.
T Consensus 163 i~-DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 163 VV-DSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred eC-CCCCCCCHHHHHHHHHHHHHhc
Confidence 87 8888899999888887776544
No 139
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=80.66 E-value=39 Score=33.86 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 373 QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 373 k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
.-+...|+..|.|+++. .|....-..+...-..|++.+...+. | .++.+..++++.+-..+
T Consensus 63 ~alA~~a~~~g~~~~v~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~-~~~~~~a~~~~~~~~~~-- 123 (244)
T cd00640 63 IALAAAAARLGLKCTIV-----------MPEGASPEKVAQMRALGAEVVLVPGD-----F-DDAIALAKELAEEDPGA-- 123 (244)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC-----H-HHHHHHHHHHHHhCCCC--
Confidence 35567899999999886 35444555666677789988777543 2 45555555554331111
Q ss_pred hhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC---CcEEEEccCCchHHHHHh----ccCCCCcEEEEcC
Q 007936 453 EEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE---VDALFVYTKTGHMASLLS----RCRPDCPIFAFTS 520 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~---a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~ 520 (584)
+..++.. .....+.....+.++.++++ .+.||+.+-+|.++.-++ ...|...|+++-+
T Consensus 124 -------~~~~~~~---n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 124 -------YYVNQFD---NPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred -------EecCCCC---CHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 1112211 11223334455667777765 589999999999887544 4568899999877
No 140
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=80.63 E-value=29 Score=36.07 Aligned_cols=105 Identities=12% Similarity=0.163 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeE
Q 007936 308 AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVI 387 (584)
Q Consensus 308 aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvi 387 (584)
.+.++.++++.+ + ..+.+++-+-....++-+.+ .+|.+-||-+++. |..++..+.+.||||+
T Consensus 75 ~~gl~~l~~~~~--~--~Gl~~~t~~~d~~~~~~l~~---~~d~lkI~s~~~~-----------n~~LL~~~a~~gkPVi 136 (260)
T TIGR01361 75 EEGLKLLRRAAD--E--HGLPVVTEVMDPRDVEIVAE---YADILQIGARNMQ-----------NFELLKEVGKQGKPVL 136 (260)
T ss_pred HHHHHHHHHHHH--H--hCCCEEEeeCChhhHHHHHh---hCCEEEECccccc-----------CHHHHHHHhcCCCcEE
Confidence 567778888773 2 34789998888777766655 4799999977652 2447888889999999
Q ss_pred EehhhhHhhhcCCCCChhhHHHHHHHHH-cccceEeecC--CCCCCCChHHHHH
Q 007936 388 VASQLLESMIEYPTPTRAEVADVSEAVR-QRADALMLSG--ESAMGQFPDKALT 438 (584)
Q Consensus 388 vATqmLeSMi~~p~PTrAEv~Dv~nav~-~G~D~imLs~--ETa~G~yPveaV~ 438 (584)
+.|.|. +|-.|+...+..+. .|.+=++|.. =++...||.+.+.
T Consensus 137 lk~G~~--------~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~d 182 (260)
T TIGR01361 137 LKRGMG--------NTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLD 182 (260)
T ss_pred EeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcC
Confidence 987654 46688888788775 5776566642 2344345555443
No 141
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=80.23 E-value=21 Score=35.63 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=63.2
Q ss_pred cCHhhhHHhHhcCCCEEEEcC--CCCHHHHHHHHHHHHhhcCC-CCceEEE--e---ecCHH----HHhcHHHHH----H
Q 007936 284 KDWLDIDFGITEGVDFIAISF--VKSAEVINHLKSYIAARSRD-SDIAVIA--K---IESID----SLKNLEEII----L 347 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSf--V~saedV~~lr~~l~~~~~~-~~i~IiA--K---IEt~~----av~NldeIl----~ 347 (584)
.+.+|++.+++.|+|.|++.- .++++.+.++.+.+ + ..+.+-. | +++.. .-.+..+++ +
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~-----g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 156 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEY-----GPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEE 156 (230)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHh-----CCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHh
Confidence 568889999999999988762 35565555555444 2 1121111 1 11100 001223333 3
Q ss_pred h-CCEEEEeCCcccc---cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 348 A-SDGAMVARGDLGA---QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 348 ~-sDGImIaRGDLg~---ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
. +|++++. |+.. .-+. + .+.+-+.++....|++.+. ..-+.+ |+..+...|+|++|+
T Consensus 157 ~g~~~ii~~--~~~~~g~~~g~-~----~~~i~~i~~~~~ipvia~G---------Gi~~~~---di~~~~~~Gadgv~i 217 (230)
T TIGR00007 157 LGLEGIIYT--DISRDGTLSGP-N----FELTKELVKAVNVPVIASG---------GVSSID---DLIALKKLGVYGVIV 217 (230)
T ss_pred CCCCEEEEE--eecCCCCcCCC-C----HHHHHHHHHhCCCCEEEeC---------CCCCHH---HHHHHHHCCCCEEEE
Confidence 3 6888863 2222 2221 2 1222233445689999874 344444 555556689999999
Q ss_pred cC
Q 007936 424 SG 425 (584)
Q Consensus 424 s~ 425 (584)
..
T Consensus 218 g~ 219 (230)
T TIGR00007 218 GK 219 (230)
T ss_pred eH
Confidence 63
No 142
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=80.18 E-value=46 Score=36.75 Aligned_cols=137 Identities=16% Similarity=0.168 Sum_probs=80.7
Q ss_pred hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEe-ecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCC
Q 007936 288 DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAK-IESIDSLKNLEEIILA-SDGAMVARGDLGAQIPL 365 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAK-IEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~ 365 (584)
+++.+.+.|+|+|.++--.+...+.++.+.++ +.| ..++.- +-....++.+.+..+. +|.|-+++|--+...+.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~--~~G--~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~ 148 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAAR--KYG--VRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGK 148 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHH--HcC--CEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCC
Confidence 77889999999999764444445666666663 233 344431 2212234455666665 89998887643222222
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHH
Q 007936 366 EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSL 445 (584)
Q Consensus 366 e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~ 445 (584)
. .....+++. ...+.|+.+..- . +. ..+..++..|+|++.+.+.-.--.-|.++++.+++.++
T Consensus 149 ~-~~~~l~~l~---~~~~iPI~a~GG---------I-~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 149 D-PLELLKEVS---EEVSIPIAVAGG---------L-DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred C-hHHHHHHHH---hhCCCcEEEECC---------C-CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 1 122222222 234688876532 1 22 34577788999999887665444568888887776553
No 143
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=80.16 E-value=40 Score=33.09 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=73.1
Q ss_pred HhhhHHhHhcCCCEEEE-----cCCCC----HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAI-----SFVKS----AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~l-----SfV~s----aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIa 355 (584)
.+.++.+.+.|+|+|-+ +|+.+ .+.++++++.+ .....+--++-. ..+.++.+.++ +||+.+-
T Consensus 19 ~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-----~~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh 91 (220)
T PRK05581 19 GEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVT-----KLPLDVHLMVEN--PDRYVPDFAKAGADIITFH 91 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcC-----CCcEEEEeeeCC--HHHHHHHHHHcCCCEEEEe
Confidence 34567888999999999 98854 55555555443 111223344433 33356666655 7997763
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC--CCCCC-CC
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG--ESAMG-QF 432 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~--ETa~G-~y 432 (584)
-+ .. ......++.+++.|..+++++. |. |..| ....+..++|.+++.+ .+..| .+
T Consensus 92 ~~-------~~---~~~~~~~~~~~~~~~~~g~~~~--------~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~ 149 (220)
T PRK05581 92 VE-------AS---EHIHRLLQLIKSAGIKAGLVLN--------PA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKF 149 (220)
T ss_pred ec-------cc---hhHHHHHHHHHHcCCEEEEEEC--------CC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccc
Confidence 11 11 2234568899999998888631 11 2222 2334456678665532 23333 34
Q ss_pred hHHHHHHHHHHH
Q 007936 433 PDKALTVLRSVS 444 (584)
Q Consensus 433 PveaV~~m~~I~ 444 (584)
+...++.++++.
T Consensus 150 ~~~~~~~i~~~~ 161 (220)
T PRK05581 150 IPEVLEKIRELR 161 (220)
T ss_pred cHHHHHHHHHHH
Confidence 455566555553
No 144
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=79.73 E-value=4.6 Score=47.99 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=70.8
Q ss_pred EEEcCCCCHHHHHHHHHHHHhhcCC----CCceEEEeecCHHHHhcHHHHHHh---C--------C-----EEEEeCCcc
Q 007936 300 IAISFVKSAEVINHLKSYIAARSRD----SDIAVIAKIESIDSLKNLEEIILA---S--------D-----GAMVARGDL 359 (584)
Q Consensus 300 I~lSfV~saedV~~lr~~l~~~~~~----~~i~IiAKIEt~~av~NldeIl~~---s--------D-----GImIaRGDL 359 (584)
.++|+.+++.||.++-=++|+.+.- ..+.|+.--||.+-++|-..|+.. . + -||+|-.|=
T Consensus 489 yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDS 568 (910)
T COG2352 489 YIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDS 568 (910)
T ss_pred hhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEeccccc
Confidence 5789999999999999988654433 458899999999999999999876 1 1 478877775
Q ss_pred cccCCCC----ChHHHHHHHHHHHHHcCCCeE
Q 007936 360 GAQIPLE----QVPSAQQKIVQLCRQLNKPVI 387 (584)
Q Consensus 360 g~ei~~e----~V~~~Qk~II~~c~~~gKPvi 387 (584)
.=+=|+- .+..+|+.+++.|+++|+-.=
T Consensus 569 nKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr 600 (910)
T COG2352 569 NKDGGYLAANWALYKAQLALVELCEKAGVELR 600 (910)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhCceEE
Confidence 5555542 688999999999999998653
No 145
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=79.49 E-value=17 Score=39.34 Aligned_cols=141 Identities=14% Similarity=0.189 Sum_probs=91.3
Q ss_pred hHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCCh
Q 007936 289 IDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQV 368 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V 368 (584)
|..-.+.|+|.|-+. |.+.++.+.++.+-+ +.+++++|-|-- +--..+.++.+-+|.+=|-||.+|-
T Consensus 40 I~~L~~aGceiVRva-vp~~~~A~al~~I~~----~~~iPlVADIHF-d~~lAl~a~~~g~dkiRINPGNig~------- 106 (346)
T TIGR00612 40 IRALEEAGCDIVRVT-VPDRESAAAFEAIKE----GTNVPLVADIHF-DYRLAALAMAKGVAKVRINPGNIGF------- 106 (346)
T ss_pred HHHHHHcCCCEEEEc-CCCHHHHHhHHHHHh----CCCCCEEEeeCC-CcHHHHHHHHhccCeEEECCCCCCC-------
Confidence 345557899998776 577777777777663 356999999943 2233455666678999999999977
Q ss_pred HHHHHHHHHHHHHcCCCeEEehh--hhH--hhhcCCCCChhhH-----HHHHHHHHcccceEeecCCCCCCCChHHHHHH
Q 007936 369 PSAQQKIVQLCRQLNKPVIVASQ--LLE--SMIEYPTPTRAEV-----ADVSEAVRQRADALMLSGESAMGQFPDKALTV 439 (584)
Q Consensus 369 ~~~Qk~II~~c~~~gKPvivATq--mLe--SMi~~p~PTrAEv-----~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~ 439 (584)
..--+.++++|+++|+|+=+-.+ =|+ =|.++..||..-+ ..+.-+-..|++=+.+|--++ .+..+++.
T Consensus 107 ~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsS---dv~~~i~a 183 (346)
T TIGR00612 107 RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKAS---DVAETVAA 183 (346)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC---CHHHHHHH
Confidence 35667899999999999754321 111 1223444655332 233335567888888875444 35555555
Q ss_pred HHHHHH
Q 007936 440 LRSVSL 445 (584)
Q Consensus 440 m~~I~~ 445 (584)
-+.+.+
T Consensus 184 yr~la~ 189 (346)
T TIGR00612 184 YRLLAE 189 (346)
T ss_pred HHHHHh
Confidence 544443
No 146
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=79.47 E-value=36 Score=37.78 Aligned_cols=167 Identities=21% Similarity=0.267 Sum_probs=108.8
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHhH-hcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCH-HHHh-cH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFGI-TEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESI-DSLK-NL 342 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~al-~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~-~av~-Nl 342 (584)
|||.+-|+.. +|-+|+..|...| ++|+|+|=+.|--+.+...+..+.+.. ..+. .+.+++-.. ..++ .+
T Consensus 11 RDG~Q~~g~~-----~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~-~~~~--~~~~~~~~~~~~~~~~~ 82 (409)
T COG0119 11 RDGEQAPGVS-----FSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAE-KAGL--FICALIAALARAIKRDI 82 (409)
T ss_pred CcCCcCCCCc-----CCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHH-hcCc--ccchhhhhhHHhHHhhH
Confidence 5666666654 4667788887776 579999988887766555555555531 1111 223333221 2233 56
Q ss_pred HHHHHh-CC--EEEEeCCcccccCCC----CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHH
Q 007936 343 EEIILA-SD--GAMVARGDLGAQIPL----EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR 415 (584)
Q Consensus 343 deIl~~-sD--GImIaRGDLg~ei~~----e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~ 415 (584)
+.++.+ .| .++++-.|+-++.-+ +++...-+..++.++.+|.++... +|.+. +-+..-+.++++++.
T Consensus 83 ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~---~Ed~~---rt~~~~l~~~~~~~~ 156 (409)
T COG0119 83 EALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS---AEDAT---RTDPEFLAEVVKAAI 156 (409)
T ss_pred HHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---eeccc---cCCHHHHHHHHHHHH
Confidence 666655 56 588888888777655 577777888999999999888763 22221 233333455666444
Q ss_pred -cccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 416 -QRADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 416 -~G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
.|++.+-|. +|-=+-.|.+.-..++.+....
T Consensus 157 ~~ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~v 188 (409)
T COG0119 157 EAGADRINLP-DTVGVATPNEVADIIEALKANV 188 (409)
T ss_pred HcCCcEEEEC-CCcCccCHHHHHHHHHHHHHhC
Confidence 559999996 7888888999988888887655
No 147
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=79.39 E-value=4 Score=44.32 Aligned_cols=52 Identities=27% Similarity=0.459 Sum_probs=43.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHH
Q 007936 105 RRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRL 156 (584)
Q Consensus 105 r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~ 156 (584)
.+-.+-+.+||.-.+.|..+.|+++|+|++=|..+||..+...+.++++|+.
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~ 146 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKK 146 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHh
Confidence 4667888999988889999999999999999999999998887777777653
No 148
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=79.21 E-value=31 Score=36.22 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=91.1
Q ss_pred HHhHhcCCCEEEEcCCCCHHH---HHHHHHHHHhhcCCCC-ceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCC
Q 007936 290 DFGITEGVDFIAISFVKSAEV---INHLKSYIAARSRDSD-IAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIP 364 (584)
Q Consensus 290 ~~al~~gvD~I~lSfV~saed---V~~lr~~l~~~~~~~~-i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~ 364 (584)
+.|-+.+...|+.-.....+. ...+..++........ +++...+....-++.+.+-+.. .+-||+-.-+| |
T Consensus 34 ~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~ 109 (282)
T TIGR01859 34 EAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----P 109 (282)
T ss_pred HHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----C
Confidence 344556777666543332221 2233333321111223 7888888866555555555554 68999986665 7
Q ss_pred CCChHHHHHHHHHHHHHcCCCeEEehhhh---HhhhcCCCCChhhHHHHHHHHH-cccceEeecCCCCCCCC---hHHHH
Q 007936 365 LEQVPSAQQKIVQLCRQLNKPVIVASQLL---ESMIEYPTPTRAEVADVSEAVR-QRADALMLSGESAMGQF---PDKAL 437 (584)
Q Consensus 365 ~e~V~~~Qk~II~~c~~~gKPvivATqmL---eSMi~~p~PTrAEv~Dv~nav~-~G~D~imLs~ETa~G~y---PveaV 437 (584)
.++....-+++++.|++.|.+|-.....+ |.++....-+--...++..|+. .|+|.+-.|-=|..|.| |.--+
T Consensus 110 ~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~ 189 (282)
T TIGR01859 110 FEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDF 189 (282)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCH
Confidence 78888889999999999998765332221 1111110000112344467775 79999998877777777 44556
Q ss_pred HHHHHHHHHH
Q 007936 438 TVLRSVSLRI 447 (584)
Q Consensus 438 ~~m~~I~~~a 447 (584)
+.|+.|++..
T Consensus 190 e~L~~i~~~~ 199 (282)
T TIGR01859 190 ERLKEIKELT 199 (282)
T ss_pred HHHHHHHHHh
Confidence 6676666543
No 149
>PRK15447 putative protease; Provisional
Probab=79.14 E-value=26 Score=37.02 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=76.8
Q ss_pred CccCHhhhHHhH-hcCCCEEEEcCCC-------CHHHHHHHHHHHHhhcCCCCceE-EEee-cCHHHHhcHHHHHHh-CC
Q 007936 282 SPKDWLDIDFGI-TEGVDFIAISFVK-------SAEVINHLKSYIAARSRDSDIAV-IAKI-ESIDSLKNLEEIILA-SD 350 (584)
Q Consensus 282 t~kD~~dI~~al-~~gvD~I~lSfV~-------saedV~~lr~~l~~~~~~~~i~I-iAKI-Et~~av~NldeIl~~-sD 350 (584)
+....++.-.++ +.|+|.|.+.... +.+++.++.+.+. ..|.++.+ +..| -..+-++.+.++++. .|
T Consensus 13 p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~--~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~ 90 (301)
T PRK15447 13 PKETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLA--AAGKEVVLSTLALVEAPSELKELRRLVENGEF 90 (301)
T ss_pred CCCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHH--HcCCEEEEEecccccCHHHHHHHHHHHhcCCC
Confidence 345677777777 5699999997442 6688998888884 45555544 3354 445666777777776 47
Q ss_pred EEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCC
Q 007936 351 GAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESA 428 (584)
Q Consensus 351 GImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa 428 (584)
+|+++ |+|. +..+++.|.|++..|||= -+-.+.. .-.-..|++.+.||-|-+
T Consensus 91 ~v~v~--d~g~--------------l~~~~e~~~~l~~d~~ln--------i~N~~a~--~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 91 LVEAN--DLGA--------------VRLLAERGLPFVAGPALN--------CYNAATL--ALLARLGATRWCMPVELS 142 (301)
T ss_pred EEEEe--CHHH--------------HHHHHhcCCCEEEecccc--------cCCHHHH--HHHHHcCCcEEEECCcCC
Confidence 77773 4431 223334599999988752 1111112 224456999999998876
No 150
>PLN02321 2-isopropylmalate synthase
Probab=78.96 E-value=39 Score=39.63 Aligned_cols=165 Identities=15% Similarity=0.226 Sum_probs=100.4
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHh-HhcCCCEEEEcC-CCCHHHHHHHHHHHHhhcCCCCc---eEEEeec-----C
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFG-ITEGVDFIAISF-VKSAEVINHLKSYIAARSRDSDI---AVIAKIE-----S 335 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~a-l~~gvD~I~lSf-V~saedV~~lr~~l~~~~~~~~i---~IiAKIE-----t 335 (584)
|||.+-|+.. +|..++..|... .+.|+|.|=+.| .-++.|.+.++.+.+. ....+ .++++|= +
T Consensus 95 RDGeQ~~g~~-----~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~--~~~~v~~~~~v~~i~a~~ra~ 167 (632)
T PLN02321 95 RDGEQSPGAT-----LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKE--VGNEVDEDGYVPVICGLSRCN 167 (632)
T ss_pred CccccCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHh--cccCCCccccceeeeeehhcc
Confidence 4444455543 466666666554 578999998876 6777777777776532 11111 1223331 2
Q ss_pred HHHHhcHHHHHHh---C----CEEEEeCCcccc----cCCCCChHHHHHHHHHHHHHcCCC-eEEehhhhHhhhcCCCCC
Q 007936 336 IDSLKNLEEIILA---S----DGAMVARGDLGA----QIPLEQVPSAQQKIVQLCRQLNKP-VIVASQLLESMIEYPTPT 403 (584)
Q Consensus 336 ~~av~NldeIl~~---s----DGImIaRGDLg~----ei~~e~V~~~Qk~II~~c~~~gKP-vivATqmLeSMi~~p~PT 403 (584)
.+.+ |..+++ + =.++++-.|+-. -+..+++...-+.+++.|+.+|.. |.+.. ....+-.
T Consensus 168 ~~dI---d~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~------EDa~rtd 238 (632)
T PLN02321 168 KKDI---DAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSP------EDAGRSD 238 (632)
T ss_pred HHhH---HHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEec------ccCCCCC
Confidence 3333 333332 2 145555555532 234567888888999999999985 55532 1222333
Q ss_pred hhhHHHHHH-HHHcccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 404 RAEVADVSE-AVRQRADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 404 rAEv~Dv~n-av~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
...+.+++. ++..|+|.|.|. +|.=...|.+.-+++..+....
T Consensus 239 ~d~l~~~~~~a~~aGa~~I~L~-DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 239 PEFLYRILGEVIKAGATTLNIP-DTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred HHHHHHHHHHHHHcCCCEEEec-ccccCCCHHHHHHHHHHHHHhc
Confidence 444555555 566899999997 8888889999988888886543
No 151
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=78.95 E-value=23 Score=38.46 Aligned_cols=114 Identities=23% Similarity=0.289 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCceEEEe-ecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHc--
Q 007936 307 SAEVINHLKSYIAARSRDSDIAVIAK-IESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQL-- 382 (584)
Q Consensus 307 saedV~~lr~~l~~~~~~~~i~IiAK-IEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~-- 382 (584)
+.+++.++++.. +.+|+.| |-++ +......+. +|+|.|. +--|.++ ...+.....+.+.+...
T Consensus 209 ~~~~l~~lr~~~-------~~PvivKgv~~~---~dA~~a~~~G~d~I~vs-nhGGr~l--d~~~~~~~~l~~i~~a~~~ 275 (351)
T cd04737 209 SPADIEFIAKIS-------GLPVIVKGIQSP---EDADVAINAGADGIWVS-NHGGRQL--DGGPASFDSLPEIAEAVNH 275 (351)
T ss_pred CHHHHHHHHHHh-------CCcEEEecCCCH---HHHHHHHHcCCCEEEEe-CCCCccC--CCCchHHHHHHHHHHHhCC
Confidence 678888888766 3688999 3222 222222333 7999983 1112222 11122222333333444
Q ss_pred CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHH---------HHHHHHHHHHhhhh
Q 007936 383 NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKAL---------TVLRSVSLRIEKWW 451 (584)
Q Consensus 383 gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV---------~~m~~I~~~aE~~~ 451 (584)
..|+|....+- .-.|+..++..|||++|+. ...+.++ +++..+..+.+..+
T Consensus 276 ~i~vi~dGGIr------------~g~Di~kaLalGA~~V~iG------r~~l~~la~~G~~gv~~~l~~l~~El~~~m 335 (351)
T cd04737 276 RVPIIFDSGVR------------RGEHVFKALASGADAVAVG------RPVLYGLALGGAQGVASVLEHLNKELKIVM 335 (351)
T ss_pred CCeEEEECCCC------------CHHHHHHHHHcCCCEEEEC------HHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 47888864432 3579999999999999985 3333333 55666666655544
No 152
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=78.75 E-value=78 Score=33.04 Aligned_cols=106 Identities=12% Similarity=0.247 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeE
Q 007936 308 AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVI 387 (584)
Q Consensus 308 aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvi 387 (584)
.+.++.++++.+ + ..+.+++-+-....++-+.+ .+|.+-||-+++. +..+++.+-+.||||+
T Consensus 77 ~~gl~~l~~~~~--~--~Gl~~~te~~d~~~~~~l~~---~vd~~kIga~~~~-----------n~~LL~~~a~~gkPV~ 138 (266)
T PRK13398 77 EEGLKILKEVGD--K--YNLPVVTEVMDTRDVEEVAD---YADMLQIGSRNMQ-----------NFELLKEVGKTKKPIL 138 (266)
T ss_pred HHHHHHHHHHHH--H--cCCCEEEeeCChhhHHHHHH---hCCEEEECccccc-----------CHHHHHHHhcCCCcEE
Confidence 667888888873 2 34789998888777766655 4799999876652 2456777788999999
Q ss_pred EehhhhHhhhcCCCCChhhHHHHHHHHH-cccceEee--cCCCCCCCChHHHHHH
Q 007936 388 VASQLLESMIEYPTPTRAEVADVSEAVR-QRADALML--SGESAMGQFPDKALTV 439 (584)
Q Consensus 388 vATqmLeSMi~~p~PTrAEv~Dv~nav~-~G~D~imL--s~ETa~G~yPveaV~~ 439 (584)
+.|.|. .|-.|+-..+..+. .|..=++| .|=.+...||.+.+.+
T Consensus 139 lk~G~~--------~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl 185 (266)
T PRK13398 139 LKRGMS--------ATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDL 185 (266)
T ss_pred EeCCCC--------CCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHH
Confidence 986543 45667777776665 56654444 3322345899665544
No 153
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=78.28 E-value=35 Score=34.98 Aligned_cols=132 Identities=13% Similarity=0.147 Sum_probs=75.4
Q ss_pred CCCCccCHh-hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecC--HH--------HHhcHHHHHH
Q 007936 279 PTISPKDWL-DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIES--ID--------SLKNLEEIIL 347 (584)
Q Consensus 279 p~lt~kD~~-dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt--~~--------av~NldeIl~ 347 (584)
|.-+..|.+ -++.+.+.|+|.|+++- --+...+.. .+.++.++..|++ +. =+..+++.++
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~ 101 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGHRG-----YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIR 101 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhcccc-----cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHH
Confidence 344555655 44678889999999983 223332221 2345778888843 22 1234667776
Q ss_pred h-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhh-hcCCCCChhhHHH-HHHHHHcccceEeec
Q 007936 348 A-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM-IEYPTPTRAEVAD-VSEAVRQRADALMLS 424 (584)
Q Consensus 348 ~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSM-i~~p~PTrAEv~D-v~nav~~G~D~imLs 424 (584)
. +|+|-+--- .+-+ +-.+....-+.+.+.|++.|.|+++. ++-. +.-+..+..++.. +..+...|+|.+-.+
T Consensus 102 ~Ga~~v~~~~~-~g~~-~~~~~~~~~~~i~~~~~~~g~~liv~---~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~ 176 (258)
T TIGR01949 102 MGADAVSIHVN-VGSD-TEWEQIRDLGMIAEICDDWGVPLLAM---MYPRGPHIDDRDPELVAHAARLGAELGADIVKTP 176 (258)
T ss_pred CCCCEEEEEEe-cCCc-hHHHHHHHHHHHHHHHHHcCCCEEEE---EeccCcccccccHHHHHHHHHHHHHHCCCEEecc
Confidence 6 676655211 1111 21234466778999999999999982 1100 0001112234444 355678999999975
No 154
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=78.13 E-value=58 Score=33.93 Aligned_cols=128 Identities=14% Similarity=0.220 Sum_probs=75.3
Q ss_pred ccCHhhhHHhHhcCCCEEEE---------------------cCCCCH----HHHHHHHHHHHhhcCCCCceEEEee--cC
Q 007936 283 PKDWLDIDFGITEGVDFIAI---------------------SFVKSA----EVINHLKSYIAARSRDSDIAVIAKI--ES 335 (584)
Q Consensus 283 ~kD~~dI~~al~~gvD~I~l---------------------SfV~sa----edV~~lr~~l~~~~~~~~i~IiAKI--Et 335 (584)
.+..+-+++..+.|+++|.. .++++- ..++...+.+.......+..++++| .+
T Consensus 22 ~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~~~pl~~qi~g~~ 101 (300)
T TIGR01037 22 GSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEFPTPLIASVYGSS 101 (300)
T ss_pred CCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccCCCcEEEEeecCC
Confidence 44556677777889999888 222111 0122222222211122346799999 56
Q ss_pred HHHHhcHHHHHHh----CCEEEEeCCcccccCCCC--------ChHHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCC
Q 007936 336 IDSLKNLEEIILA----SDGAMVARGDLGAQIPLE--------QVPSAQQKIVQLCRQL-NKPVIVASQLLESMIEYPTP 402 (584)
Q Consensus 336 ~~av~NldeIl~~----sDGImIaRGDLg~ei~~e--------~V~~~Qk~II~~c~~~-gKPvivATqmLeSMi~~p~P 402 (584)
++.+...-++++. +|+|=+ .+.+|.. .-+..-.+|++..++. ++|+.+=. .|
T Consensus 102 ~~~~~~~a~~~~~~~~~~d~iel-----N~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi----------~~ 166 (300)
T TIGR01037 102 VEEFAEVAEKLEKAPPYVDAYEL-----NLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKL----------SP 166 (300)
T ss_pred HHHHHHHHHHHHhccCccCEEEE-----ECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEC----------CC
Confidence 6666665555552 566655 3444431 2345557788888765 89988742 35
Q ss_pred ChhhHHHHHH-HHHcccceEeecC
Q 007936 403 TRAEVADVSE-AVRQRADALMLSG 425 (584)
Q Consensus 403 TrAEv~Dv~n-av~~G~D~imLs~ 425 (584)
+-.|..+++. +...|+|++.+++
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEc
Confidence 5556667776 5568999999875
No 155
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=78.06 E-value=23 Score=37.18 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=63.2
Q ss_pred hhhHHhHhcCCCEEEEcCCCC-------HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEe-CC
Q 007936 287 LDIDFGITEGVDFIAISFVKS-------AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVA-RG 357 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~s-------aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIa-RG 357 (584)
+.++.+.+.|+|.|.+.+=-. .+.++++++.+ ..+++.|.= ...+......+. +|+|.+. +|
T Consensus 133 ~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~-------~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g 203 (299)
T cd02809 133 DLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW-------KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG 203 (299)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhc-------CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC
Confidence 345666788999887754111 25666666544 267888841 222223333333 7998883 22
Q ss_pred cccccC--CCCChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC
Q 007936 358 DLGAQI--PLEQVPSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG 425 (584)
Q Consensus 358 DLg~ei--~~e~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ 425 (584)
|..+ +... ...+.+.+... ..|+|.+.-+ - .-.|+..++..|||++|+..
T Consensus 204 --G~~~~~g~~~----~~~l~~i~~~~~~~ipvia~GGI---------~---~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 204 --GRQLDGAPAT----IDALPEIVAAVGGRIEVLLDGGI---------R---RGTDVLKALALGADAVLIGR 257 (299)
T ss_pred --CCCCCCCcCH----HHHHHHHHHHhcCCCeEEEeCCC---------C---CHHHHHHHHHcCCCEEEEcH
Confidence 2222 1111 12222222333 4888876432 2 23688999999999999974
No 156
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=77.92 E-value=36 Score=37.02 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=93.0
Q ss_pred cCCcccCCccccCCCCCccCHhhhHH-hHhcCCCEEEE-cCCCCHH------HHHHHHHHHHhhcCCCCceEEEeecCHH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDF-GITEGVDFIAI-SFVKSAE------VINHLKSYIAARSRDSDIAVIAKIESID 337 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~-al~~gvD~I~l-SfV~sae------dV~~lr~~l~~~~~~~~i~IiAKIEt~~ 337 (584)
|||.+-|+.. +|..++..|.. -.+.|++.|=+ ||| +++ |-.++.+.++. ..+..+..++ =+.+
T Consensus 55 RDG~Q~~g~~-----~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~-~~~~~~~~l~--~n~~ 125 (347)
T PLN02746 55 RDGLQNEKNI-----VPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRN-LEGARFPVLT--PNLK 125 (347)
T ss_pred CccCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHh-ccCCceeEEc--CCHH
Confidence 4444455543 34455555544 45789999855 566 432 33333333421 1122233332 2444
Q ss_pred HHhcHHHHHHh-CCEEEE--eCCccc----ccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhh-hcCCCCChhh---
Q 007936 338 SLKNLEEIILA-SDGAMV--ARGDLG----AQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM-IEYPTPTRAE--- 406 (584)
Q Consensus 338 av~NldeIl~~-sDGImI--aRGDLg----~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSM-i~~p~PTrAE--- 406 (584)
+++. .++. .|.|-+ .-.|+= .....++.....+++++.|+++|..|... + || ..+|.-+|++
T Consensus 126 die~---A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~---i-s~~fg~p~~~r~~~~~ 198 (347)
T PLN02746 126 GFEA---AIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY---V-SCVVGCPIEGPVPPSK 198 (347)
T ss_pred HHHH---HHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---E-EeeecCCccCCCCHHH
Confidence 4333 3333 565433 333321 12334677777789999999999988521 0 11 2234445544
Q ss_pred HHHHHH-HHHcccceEeecCCCCCCCChHHHHHHHHHHHHH
Q 007936 407 VADVSE-AVRQRADALMLSGESAMGQFPDKALTVLRSVSLR 446 (584)
Q Consensus 407 v~Dv~n-av~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~ 446 (584)
+.+++. ++..|+|.|.|. +|.=--.|.++-++++.+..+
T Consensus 199 l~~~~~~~~~~Gad~I~l~-DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 199 VAYVAKELYDMGCYEISLG-DTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHHHcCCCEEEec-CCcCCcCHHHHHHHHHHHHHh
Confidence 444443 778899999997 777778899999998888543
No 157
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=77.57 E-value=31 Score=37.54 Aligned_cols=177 Identities=13% Similarity=0.080 Sum_probs=94.6
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhhc--CCCCceEEEeecC------HH------HHhcHHHHHHh-----CCEEEEeCCc
Q 007936 298 DFIAISFVKSAEVINHLKSYIAARS--RDSDIAVIAKIES------ID------SLKNLEEIILA-----SDGAMVARGD 358 (584)
Q Consensus 298 D~I~lSfV~saedV~~lr~~l~~~~--~~~~i~IiAKIEt------~~------av~NldeIl~~-----sDGImIaRGD 358 (584)
|-++.+--+++.-..++.+++.... ...+..|++ +.. .. ++.|++.+++. +|+++.-+|=
T Consensus 36 ~~~~~~~~~~~~~~~rL~Rl~~~g~l~~tGr~vilp-vDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~~~~G~ 114 (348)
T PRK09250 36 DRVMIYSDRNPGVLRNLQRLLNHGRLAGTGYLSILP-VDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVASTLGV 114 (348)
T ss_pred hhccCcccCCHhHHHHHHHHhcccccCCCCCEEEEE-cccccccCCccccccCCcccCHHHHHHHHHhcCCCEEEeCHHH
Confidence 4456666677777888888873210 112233333 221 11 66666665544 6888876553
Q ss_pred ccccCCCCChHHHHHHHHHH-HH--HcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHH
Q 007936 359 LGAQIPLEQVPSAQQKIVQL-CR--QLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDK 435 (584)
Q Consensus 359 Lg~ei~~e~V~~~Qk~II~~-c~--~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPve 435 (584)
| +. ++ ...+|.|+--.-=.++.....+...-+++|-.|+..|+|||..+-=-- +.+=-+
T Consensus 115 l-----------------~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~G-s~~E~~ 176 (348)
T PRK09250 115 L-----------------EAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFG-SEESRR 176 (348)
T ss_pred H-----------------HhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC-CHHHHH
Confidence 3 33 11 235788876221111111122344456889999999999998862211 233356
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccCCC-CCCCCC-cChHHHHHHHHHHHHhhcCCcEEEE
Q 007936 436 ALTVLRSVSLRIEKWWREEKRHEAMELPD-VGSSFA-ESISEEICNSAAKMANNLEVDALFV 495 (584)
Q Consensus 436 aV~~m~~I~~~aE~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ia~sav~~A~~l~a~aIvv 495 (584)
.++.+.+++.++++|=.-.. -..++.-. ...... .+-.+ +...|+++|-+++|+.|=+
T Consensus 177 ml~~l~~i~~ea~~~GlPlv-~~~YpRG~~i~~~~d~~~~~d-~Ia~AaRiaaELGADIVKv 236 (348)
T PRK09250 177 QIEEISEAFEEAHELGLATV-LWSYLRNSAFKKDGDYHTAAD-LTGQANHLAATIGADIIKQ 236 (348)
T ss_pred HHHHHHHHHHHHHHhCCCEE-EEecccCcccCCcccccccHH-HHHHHHHHHHHHcCCEEEe
Confidence 77788888888887521000 00111100 000000 11133 5566788999999996643
No 158
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=77.19 E-value=67 Score=33.34 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=94.6
Q ss_pred cCCcccCCccccCCCCCccCHhhhH-HhHhcCCCEEEEcC-CCCHHHHHHHHHHHHhhcCCCCceEEEeecC-HHHH--h
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDID-FGITEGVDFIAISF-VKSAEVINHLKSYIAARSRDSDIAVIAKIES-IDSL--K 340 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~-~al~~gvD~I~lSf-V~saedV~~lr~~l~~~~~~~~i~IiAKIEt-~~av--~ 340 (584)
|||-+.++.. +|..++..|- .-.+.|+|.|=+-| .-++.++..++.+.+.. . .+..+.+..-. ..++ .
T Consensus 7 RDG~Q~~~~~-----~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~~~ 79 (273)
T cd07941 7 RDGTQGEGIS-----FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLK-L-KHAKLAAFGSTRRAGVKAE 79 (273)
T ss_pred CCcCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcC-C-CCcEEEEEecccccCCCcc
Confidence 5565565543 3555555554 44578999998744 34577777776654211 1 12344433211 1111 1
Q ss_pred ---cHHHHHHh-CCEEEEe--CCccc----ccCCCCChHHHHHHHHHHHHHcCCCeEEe-hhhhHhhhcCCCCChhhHHH
Q 007936 341 ---NLEEIILA-SDGAMVA--RGDLG----AQIPLEQVPSAQQKIVQLCRQLNKPVIVA-SQLLESMIEYPTPTRAEVAD 409 (584)
Q Consensus 341 ---NldeIl~~-sDGImIa--RGDLg----~ei~~e~V~~~Qk~II~~c~~~gKPvivA-TqmLeSMi~~p~PTrAEv~D 409 (584)
.++..++. .|.|.+- -.|+- .....++.....+..++.++++|..|.+. +.+.+ ..+-+...+.+
T Consensus 80 ~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d----~~~~~~~~~~~ 155 (273)
T cd07941 80 EDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFD----GYKANPEYALA 155 (273)
T ss_pred chHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccc----cCCCCHHHHHH
Confidence 23334443 4655442 22321 11223455666678999999999988763 11111 12223444555
Q ss_pred HHH-HHHcccceEeecCCCCCCCChHHHHHHHHHHHHH
Q 007936 410 VSE-AVRQRADALMLSGESAMGQFPDKALTVLRSVSLR 446 (584)
Q Consensus 410 v~n-av~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~ 446 (584)
++. +...|+|.+.|. +|.=...|.+.-+.++.+.++
T Consensus 156 ~~~~~~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 156 TLKAAAEAGADWLVLC-DTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred HHHHHHhCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHh
Confidence 554 355699998876 888788999988877776543
No 159
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=77.12 E-value=69 Score=34.94 Aligned_cols=103 Identities=15% Similarity=0.241 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEE
Q 007936 309 EVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIV 388 (584)
Q Consensus 309 edV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPviv 388 (584)
+.++.++++.+ + ..+.+++-+-+.+.++-+.+ .+|.+-||-+++. +-.+++++.+.||||++
T Consensus 152 ~gl~~L~~~~~--e--~Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~-----------n~~LL~~va~t~kPVll 213 (352)
T PRK13396 152 SALELLAAARE--A--TGLGIITEVMDAADLEKIAE---VADVIQVGARNMQ-----------NFSLLKKVGAQDKPVLL 213 (352)
T ss_pred HHHHHHHHHHH--H--cCCcEEEeeCCHHHHHHHHh---hCCeEEECccccc-----------CHHHHHHHHccCCeEEE
Confidence 44555555542 2 34788998888777766655 4799999976652 23457888889999999
Q ss_pred ehhhhHhhhcCCCCChhhHHHHHHHHHc-ccceEeecCC---CCCCCChHHHH
Q 007936 389 ASQLLESMIEYPTPTRAEVADVSEAVRQ-RADALMLSGE---SAMGQFPDKAL 437 (584)
Q Consensus 389 ATqmLeSMi~~p~PTrAEv~Dv~nav~~-G~D~imLs~E---Ta~G~yPveaV 437 (584)
.|.| .+|-.|+-..++.+.. |.+-++|..- |-...||.+.+
T Consensus 214 k~G~--------~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~ 258 (352)
T PRK13396 214 KRGM--------AATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTL 258 (352)
T ss_pred eCCC--------CCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCc
Confidence 8754 3677888888887764 7766777633 33336774443
No 160
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=76.88 E-value=45 Score=31.51 Aligned_cols=108 Identities=20% Similarity=0.148 Sum_probs=56.3
Q ss_pred ChhhHHHHHHHHHcccceEeecCCCCCCCC----hHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHH
Q 007936 403 TRAEVADVSEAVRQRADALMLSGESAMGQF----PDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEIC 478 (584)
Q Consensus 403 TrAEv~Dv~nav~~G~D~imLs~ETa~G~y----PveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia 478 (584)
|..-+..+..|...|+|++++..- .+.. +.+.++..+.++..++.... -..+ .. +.. .. ..+.+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~p-v~iy-~~--p~~----~~-~~~~~- 131 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVIN--IGSLKEGDWEEVLEEIAAVVEAADGGLP-LKVI-LE--TRG----LK-TADEI- 131 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc--HHHHhCCCHHHHHHHHHHHHHHhcCCce-EEEE-EE--CCC----CC-CHHHH-
Confidence 455567788899999999998532 1111 35667777777766511010 0000 00 000 00 12333
Q ss_pred HHHHHHHhhcCCcEEEEccC------CchHHHHHhc-cCCCCcEEEEcCch
Q 007936 479 NSAAKMANNLEVDALFVYTK------TGHMASLLSR-CRPDCPIFAFTSTT 522 (584)
Q Consensus 479 ~sav~~A~~l~a~aIvv~T~------sG~tA~~lSr-~RP~~PIiavT~~~ 522 (584)
..+++++...++++|=..+. +-...+.+.+ +.+.+||+++....
T Consensus 132 ~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~ 182 (201)
T cd00945 132 AKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK 182 (201)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC
Confidence 33456666779987765553 2122233333 33367888877654
No 161
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=76.75 E-value=52 Score=35.76 Aligned_cols=119 Identities=21% Similarity=0.254 Sum_probs=80.8
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCC----------CCHHHHHHHHHHHHhhcCCCCceEEEee----cCHHH-HhcHHHHH
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFV----------KSAEVINHLKSYIAARSRDSDIAVIAKI----ESIDS-LKNLEEII 346 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV----------~saedV~~lr~~l~~~~~~~~i~IiAKI----Et~~a-v~NldeIl 346 (584)
+..++++++.+++.|+|.|.+.+- -+-+|+.++.+++. ..|.+..+..-+ +..+. .+-++...
T Consensus 12 pag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah--~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~ 89 (347)
T COG0826 12 PAGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAH--SAGKKVYVAVNTLLHNDELETLERYLDRLV 89 (347)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHH--HcCCeEEEEeccccccchhhHHHHHHHHHH
Confidence 456799999999999999998854 67788999988884 445433322211 12222 33345555
Q ss_pred Hh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcC--CCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 347 LA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLN--KPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 347 ~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~g--KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
+. .|+|+++ |+| ++..|++.+ .|+.+.||+- -|-+ ..+--+-..|+.-++|
T Consensus 90 e~GvDaviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~--------v~N~--~~~~f~~~~G~~rvVl 143 (347)
T COG0826 90 ELGVDAVIVA--DPG--------------LIMLARERGPDLPIHVSTQAN--------VTNA--ETAKFWKELGAKRVVL 143 (347)
T ss_pred HcCCCEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEe--------cCCH--HHHHHHHHcCCEEEEe
Confidence 55 7999995 553 577888888 9999999864 1111 2223355679999999
Q ss_pred cCCCC
Q 007936 424 SGESA 428 (584)
Q Consensus 424 s~ETa 428 (584)
+-|.+
T Consensus 144 ~rEls 148 (347)
T COG0826 144 PRELS 148 (347)
T ss_pred CccCC
Confidence 99877
No 162
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=76.73 E-value=39 Score=34.89 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=74.5
Q ss_pred CCCCccCHh-hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHH----------hcHHHHHH
Q 007936 279 PTISPKDWL-DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSL----------KNLEEIIL 347 (584)
Q Consensus 279 p~lt~kD~~-dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av----------~NldeIl~ 347 (584)
|.-+..|.+ -++.+++.|+|.|+++. --+...+..+ ..++.++.+|++.-.+ ...++.++
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~ 104 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY-----GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIK 104 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc-----CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHH
Confidence 333555655 44678899999999983 3333333322 3357789988843333 22566665
Q ss_pred h-CCEEEEe--CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHH-HHHHHHcccceEee
Q 007936 348 A-SDGAMVA--RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVAD-VSEAVRQRADALML 423 (584)
Q Consensus 348 ~-sDGImIa--RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~D-v~nav~~G~D~imL 423 (584)
. +|.+.+- -|++ ..+++...-+++.+.|++.|.|+++-..-.---+... -+..++.. ..-+...|+|.+=.
T Consensus 105 ~Gad~v~~~~~~g~~----~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~-~~~~~i~~a~~~a~e~GAD~vKt 179 (267)
T PRK07226 105 LGADAVSVHVNVGSE----TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNE-YDPEVVAHAARVAAELGADIVKT 179 (267)
T ss_pred cCCCEEEEEEecCCh----hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCC-ccHHHHHHHHHHHHHHCCCEEee
Confidence 5 6755442 1222 1345666667889999999999987320000000111 12233333 24466789999955
Q ss_pred c
Q 007936 424 S 424 (584)
Q Consensus 424 s 424 (584)
+
T Consensus 180 ~ 180 (267)
T PRK07226 180 N 180 (267)
T ss_pred C
Confidence 4
No 163
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=76.71 E-value=45 Score=36.15 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCcccccCCC-CChHHHHHHHHHHHH
Q 007936 306 KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGDLGAQIPL-EQVPSAQQKIVQLCR 380 (584)
Q Consensus 306 ~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGDLg~ei~~-e~V~~~Qk~II~~c~ 380 (584)
.+.+++.++++.. +.+|+.| ++.+.++...+ +|+|.|. +--|..+.. .....+...+.+..+
T Consensus 200 ~~~~~i~~l~~~~-------~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~ 266 (344)
T cd02922 200 LTWDDIKWLRKHT-------KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCP 266 (344)
T ss_pred CCHHHHHHHHHhc-------CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHH
Confidence 5667777777654 3688888 44556655554 7998886 333444321 122233444444443
Q ss_pred Hc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 381 QL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 381 ~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+. ..|+|.+.-+- --.||..++..|||++.+.
T Consensus 267 ~~~~~~~vi~~GGIr------------~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 267 EVFDKIEVYVDGGVR------------RGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred HhCCCceEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 43 37888764322 3579999999999999885
No 164
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=76.59 E-value=6.2 Score=38.16 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEccCCchHHHHHhccCCC-CcEEEEcCc
Q 007936 474 SEEICNSAAKMANNLEVDALFVYTKTGHMASLLSRCRPD-CPIFAFTST 521 (584)
Q Consensus 474 ~~~ia~sav~~A~~l~a~aIvv~T~sG~tA~~lSr~RP~-~PIiavT~~ 521 (584)
.+..-..|++-|.+++.+-|+|.+.+|+||++++-+-+. ..|+.||..
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh 60 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHH 60 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEee
Confidence 466778899999999999999999999999999999888 899999985
No 165
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=75.90 E-value=34 Score=36.43 Aligned_cols=210 Identities=20% Similarity=0.218 Sum_probs=120.8
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHH------------------------------------------hhcCC
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIA------------------------------------------ARSRD 324 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~------------------------------------------~~~~~ 324 (584)
..|..|++.|+|+|.+. ++|+.+++++=. ....|
T Consensus 19 ~~it~alEaG~d~vvv~----~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~~~~~G 94 (376)
T COG1465 19 KRITAALEAGVDVVVVR----PADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRELMDRG 94 (376)
T ss_pred HHHHHHHhcCCCEEEEC----HHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHHhhhcC
Confidence 45678899999998875 467777665411 01234
Q ss_pred CCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCCh
Q 007936 325 SDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTR 404 (584)
Q Consensus 325 ~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTr 404 (584)
.....+..|.+.+--+-..++.+.+|.+++---|..+ +|+|.+.. -.++.+--++|. .-+-
T Consensus 95 ~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlIA--------~l~~e~~kliA~----------V~sa 155 (376)
T COG1465 95 HEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLIA--------DLQHEKVKLIAG----------VKSA 155 (376)
T ss_pred cceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHHH--------HhhccceEEEEE----------eccH
Confidence 5567888999888877788888888988876555533 57665321 122333334441 3444
Q ss_pred hhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCC---------CC------
Q 007936 405 AEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGS---------SF------ 469 (584)
Q Consensus 405 AEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~---------~~------ 469 (584)
+|..-....+..|+|+++|.++ .| +-++-...+..++|+.-.+......-....+.. +.
T Consensus 156 eEA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~E~~eL~~a~vt~ieplG~gDRVCVDTcsLm~~gEG 229 (376)
T COG1465 156 EEARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAESERLELVTATVTEIEPLGSGDRVCVDTCSLMTRGEG 229 (376)
T ss_pred HHHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhccceeEEEEEEEEEEeecCCCceEEEeeecccccCCc
Confidence 5555557789999999999865 34 455666777777774211100000000000000 00
Q ss_pred -----CcC-----hHHHHHH-HHHHHHhhcCCcEEEEccCC-chHHHHHhccCCCCcEEEEcCchhhh
Q 007936 470 -----AES-----ISEEICN-SAAKMANNLEVDALFVYTKT-GHMASLLSRCRPDCPIFAFTSTTSVR 525 (584)
Q Consensus 470 -----~~~-----~~~~ia~-sav~~A~~l~a~aIvv~T~s-G~tA~~lSr~RP~~PIiavT~~~~~a 525 (584)
..+ -+++.-+ -...--++.||-++-.|-+. |.-.++||-.|+.-+++.+-.+-++.
T Consensus 230 MLVGs~s~gmFlVhsEs~espYVAaRPFRVNAG~VhaYi~vPg~kTkYLaEL~aGDeV~iVD~dGr~R 297 (376)
T COG1465 230 MLVGSQSRGMFLVHSESEESPYVAARPFRVNAGAVHAYIRVPGGKTKYLAELKAGDEVLIVDFDGRTR 297 (376)
T ss_pred eEeecccCcEEEEecccccCcccccCceeecccceeEEEEcCCCceEEhhhhcCCCeEEEEecCCcee
Confidence 000 0000000 00111245677777777776 77778999999999999887765543
No 166
>PRK08227 autoinducer 2 aldolase; Validated
Probab=75.43 E-value=13 Score=38.83 Aligned_cols=145 Identities=16% Similarity=0.222 Sum_probs=85.4
Q ss_pred HhhhHHhHhcCCCEEEEc-CCCCHHHHHHHHHHHH--hhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCccccc
Q 007936 286 WLDIDFGITEGVDFIAIS-FVKSAEVINHLKSYIA--ARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQ 362 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lS-fV~saedV~~lr~~l~--~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~e 362 (584)
.-+++.|+.+|+|.|.+. |+-+..+-+.++++-+ +......+.+++....-+.+.|=.+++..+=. +| .+||++
T Consensus 97 ~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaR--ia-aELGAD 173 (264)
T PRK08227 97 AVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATR--IA-AEMGAQ 173 (264)
T ss_pred eecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHH--HH-HHHcCC
Confidence 345678999999988773 4445444444443322 11112346677733222223332333333110 00 234433
Q ss_pred C---CCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC-CChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHH
Q 007936 363 I---PLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPT-PTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALT 438 (584)
Q Consensus 363 i---~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~-PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~ 438 (584)
+ ++.. ...+++++.| ..||++|-- |. +++.-...+++++..|+-++...--..-=..|.+.++
T Consensus 174 iVK~~y~~--~~f~~vv~a~---~vPVviaGG--------~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~ 240 (264)
T PRK08227 174 IIKTYYVE--EGFERITAGC---PVPIVIAGG--------KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIK 240 (264)
T ss_pred EEecCCCH--HHHHHHHHcC---CCcEEEeCC--------CCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHH
Confidence 3 2222 4566777766 589999852 22 3344468899999999999998777777788999999
Q ss_pred HHHHHHHH
Q 007936 439 VLRSVSLR 446 (584)
Q Consensus 439 ~m~~I~~~ 446 (584)
.++.|+.+
T Consensus 241 al~~IVh~ 248 (264)
T PRK08227 241 AVHAVVHE 248 (264)
T ss_pred HHHHHHhC
Confidence 99998754
No 167
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=75.22 E-value=53 Score=34.56 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=90.8
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHh-HhcCCCEEEE-cCCCC-----HHHHHHHHHHHHhhcCCCCceEEEeecCHHH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFG-ITEGVDFIAI-SFVKS-----AEVINHLKSYIAARSRDSDIAVIAKIESIDS 338 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~a-l~~gvD~I~l-SfV~s-----aedV~~lr~~l~~~~~~~~i~IiAKIEt~~a 338 (584)
|||.+.|+.. +|..++..|... .+.|+|.|=+ ||+.. ..|-.++.+.+.. . ....+.+-.-+.++
T Consensus 13 RDG~Q~~~~~-----~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~-~--~~~~~~~l~~~~~~ 84 (287)
T PRK05692 13 RDGLQNEKRF-----IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQR-R--PGVTYAALTPNLKG 84 (287)
T ss_pred CccccCcCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhc-c--CCCeEEEEecCHHH
Confidence 5555555443 355666666544 5789999966 45432 1122333333421 1 22444444434444
Q ss_pred HhcHHHHHHh-CCEEE--EeCCcc----cccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCC---ChhhHH
Q 007936 339 LKNLEEIILA-SDGAM--VARGDL----GAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTP---TRAEVA 408 (584)
Q Consensus 339 v~NldeIl~~-sDGIm--IaRGDL----g~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~P---TrAEv~ 408 (584)
++. -++. .|.|. +.-.|+ -.....++.....+.+++.++++|..+...=.+ ....|.- +.+.+.
T Consensus 85 ie~---A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~---~~~~~~~~~~~~~~~~ 158 (287)
T PRK05692 85 LEA---ALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC---VLGCPYEGEVPPEAVA 158 (287)
T ss_pred HHH---HHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE---EecCCCCCCCCHHHHH
Confidence 422 2332 45433 333332 112233455666778999999999987521000 0111222 334444
Q ss_pred HHHH-HHHcccceEeecCCCCCCCChHHHHHHHHHHHHH
Q 007936 409 DVSE-AVRQRADALMLSGESAMGQFPDKALTVLRSVSLR 446 (584)
Q Consensus 409 Dv~n-av~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~ 446 (584)
+++. +...|+|.|.|. +|.=-..|.++-+.++.+.++
T Consensus 159 ~~~~~~~~~G~d~i~l~-DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 159 DVAERLFALGCYEISLG-DTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred HHHHHHHHcCCcEEEec-cccCccCHHHHHHHHHHHHHh
Confidence 4444 667899999997 777777899999988888654
No 168
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.88 E-value=1.1e+02 Score=31.54 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=83.4
Q ss_pred CccCHhhhH-HhHhcCCCEEEEcC---------------CCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHH-HhcHHH
Q 007936 282 SPKDWLDID-FGITEGVDFIAISF---------------VKSAEVINHLKSYIAARSRDSDIAVIAKIESIDS-LKNLEE 344 (584)
Q Consensus 282 t~kD~~dI~-~al~~gvD~I~lSf---------------V~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~a-v~Nlde 344 (584)
+..++..+. .-.+.|+|.|=+.| ....+.++.+++.. ...++.+......+ .+.++.
T Consensus 20 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~------~~~~~~~~~~~~~~~~~~i~~ 93 (263)
T cd07943 20 TLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL------KQAKLGVLLLPGIGTVDDLKM 93 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc------cCCEEEEEecCCccCHHHHHH
Confidence 445555554 44678999986642 22223333443322 23555554311000 223334
Q ss_pred HHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHH-HHcccceEe
Q 007936 345 IILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEA-VRQRADALM 422 (584)
Q Consensus 345 Il~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~na-v~~G~D~im 422 (584)
..+. .|.|-+. .+..++. ..+..++.+++.|..+.+.- . |. ..-+..++.+++.. ...|+|.+.
T Consensus 94 a~~~g~~~iri~-------~~~s~~~-~~~~~i~~ak~~G~~v~~~~--~--~~--~~~~~~~~~~~~~~~~~~G~d~i~ 159 (263)
T cd07943 94 AADLGVDVVRVA-------THCTEAD-VSEQHIGAARKLGMDVVGFL--M--MS--HMASPEELAEQAKLMESYGADCVY 159 (263)
T ss_pred HHHcCCCEEEEE-------echhhHH-HHHHHHHHHHHCCCeEEEEE--E--ec--cCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3333 5766552 3444444 34668999999999877652 1 11 23355777777665 456999999
Q ss_pred ecCCCCCCCChHHHHHHHHHHHHH
Q 007936 423 LSGESAMGQFPDKALTVLRSVSLR 446 (584)
Q Consensus 423 Ls~ETa~G~yPveaV~~m~~I~~~ 446 (584)
|. +|.=.-+|.+.-+.++.+-+.
T Consensus 160 l~-DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 160 VT-DSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred Ec-CCCCCcCHHHHHHHHHHHHHh
Confidence 84 888889999988887777543
No 169
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=74.84 E-value=84 Score=30.36 Aligned_cols=131 Identities=22% Similarity=0.281 Sum_probs=73.8
Q ss_pred hhhHHhHhcCCCEEEE-----cCCCCH----HHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeC
Q 007936 287 LDIDFGITEGVDFIAI-----SFVKSA----EVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 287 ~dI~~al~~gvD~I~l-----SfV~sa----edV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaR 356 (584)
+.++.+.+.|+|+|-+ +|+.+. +.++++++.. +..+.+--++.+.. +.++.+.+. +||+.|-
T Consensus 16 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-----~~~~~v~l~~~d~~--~~~~~~~~~g~dgv~vh- 87 (211)
T cd00429 16 EELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-----DLPLDVHLMVENPE--RYIEAFAKAGADIITFH- 87 (211)
T ss_pred HHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC-----CCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEC-
Confidence 4467888999999998 776544 4455555432 22233446665543 346666666 7998763
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC--CCCCC-CCh
Q 007936 357 GDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG--ESAMG-QFP 433 (584)
Q Consensus 357 GDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~--ETa~G-~yP 433 (584)
.... ......++.+++.|.-+++.+. |+.. . +....+..++|.+++.+ .+..| .++
T Consensus 88 --------~~~~-~~~~~~~~~~~~~~~~~g~~~~----------~~~~-~-~~~~~~~~~~d~i~~~~~~~g~tg~~~~ 146 (211)
T cd00429 88 --------AEAT-DHLHRTIQLIKELGMKAGVALN----------PGTP-V-EVLEPYLDEVDLVLVMSVNPGFGGQKFI 146 (211)
T ss_pred --------ccch-hhHHHHHHHHHHCCCeEEEEec----------CCCC-H-HHHHHHHhhCCEEEEEEECCCCCCcccC
Confidence 1111 1224558889999998887631 2111 1 11233345578776632 13233 566
Q ss_pred HHHHHHHHHHHHH
Q 007936 434 DKALTVLRSVSLR 446 (584)
Q Consensus 434 veaV~~m~~I~~~ 446 (584)
....+.++++.+.
T Consensus 147 ~~~~~~i~~~~~~ 159 (211)
T cd00429 147 PEVLEKIRKLREL 159 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665443
No 170
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=74.67 E-value=48 Score=37.00 Aligned_cols=126 Identities=18% Similarity=0.171 Sum_probs=72.9
Q ss_pred CHhhhHHhHhcCCCEEEEcC-CCCHHHHHHHHHH-HHhhc---CCCCceEEEeecCHHHHh-------------------
Q 007936 285 DWLDIDFGITEGVDFIAISF-VKSAEVINHLKSY-IAARS---RDSDIAVIAKIESIDSLK------------------- 340 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSf-V~saedV~~lr~~-l~~~~---~~~~i~IiAKIEt~~av~------------------- 340 (584)
+.+.++..+++|+..|..|. ..-...+...|.. ++... ......|++|+-+++-..
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~ 163 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK 163 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence 34567888999999998885 3322233222221 00000 001146999987654431
Q ss_pred -cHHHHHHh-----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHc--------CCCeEEehhhhHhhhcCCCCChhh
Q 007936 341 -NLEEIILA-----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQL--------NKPVIVASQLLESMIEYPTPTRAE 406 (584)
Q Consensus 341 -NldeIl~~-----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~--------gKPvivATqmLeSMi~~p~PTrAE 406 (584)
+.+|-..+ +|.|.+. .|=|-+.+-......--.|.+.+.+. ..|||.|--+- |
T Consensus 164 it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~---------t--- 230 (418)
T cd04742 164 ITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG---------T--- 230 (418)
T ss_pred CCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC---------C---
Confidence 22222222 5888888 78777766433333334455444333 58999885432 3
Q ss_pred HHHHHHHHHcccceEee
Q 007936 407 VADVSEAVRQRADALML 423 (584)
Q Consensus 407 v~Dv~nav~~G~D~imL 423 (584)
-.+++-|...|+|++.+
T Consensus 231 g~~vaAA~alGAd~V~~ 247 (418)
T cd04742 231 PEAAAAAFALGADFIVT 247 (418)
T ss_pred HHHHHHHHHcCCcEEee
Confidence 34778899999999987
No 171
>TIGR03586 PseI pseudaminic acid synthase.
Probab=74.61 E-value=45 Score=35.96 Aligned_cols=74 Identities=18% Similarity=0.278 Sum_probs=47.7
Q ss_pred HHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHH-ccc-c
Q 007936 343 EEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR-QRA-D 419 (584)
Q Consensus 343 deIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~-~G~-D 419 (584)
|.+.+. +|.+=||-+|+.- + .+++.+.+.||||++.|.| .|-+|+......+. .|. +
T Consensus 104 d~l~~~~v~~~KI~S~~~~n-~----------~LL~~va~~gkPvilstG~---------~t~~Ei~~Av~~i~~~g~~~ 163 (327)
T TIGR03586 104 DFLESLDVPAYKIASFEITD-L----------PLIRYVAKTGKPIIMSTGI---------ATLEEIQEAVEACREAGCKD 163 (327)
T ss_pred HHHHHcCCCEEEECCccccC-H----------HHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHCCCCc
Confidence 333334 6888889888732 2 3466677889999999864 46789988888876 577 4
Q ss_pred eEeecCCCCCCCChHHHH
Q 007936 420 ALMLSGESAMGQFPDKAL 437 (584)
Q Consensus 420 ~imLs~ETa~G~yPveaV 437 (584)
-++|=..+.. .+|.+.+
T Consensus 164 i~LlhC~s~Y-P~~~~~~ 180 (327)
T TIGR03586 164 LVLLKCTSSY-PAPLEDA 180 (327)
T ss_pred EEEEecCCCC-CCCcccC
Confidence 4444443333 3444443
No 172
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=74.44 E-value=11 Score=39.19 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=53.7
Q ss_pred CCccCHhhhH-Hh-HhcCCCEEEEcCCCC-----HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEE
Q 007936 281 ISPKDWLDID-FG-ITEGVDFIAISFVKS-----AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAM 353 (584)
Q Consensus 281 lt~kD~~dI~-~a-l~~gvD~I~lSfV~s-----aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGIm 353 (584)
|.+.+.++.. .+ -..++|.|++|=-.+ .++++++|+.+ + ++|+ +=|=--.+|+.++++.+||++
T Consensus 155 l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~-----~--~PVl--vGSGvt~~Ni~~~l~~ADG~I 225 (254)
T PF03437_consen 155 LATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAV-----P--VPVL--VGSGVTPENIAEYLSYADGAI 225 (254)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcC-----C--CCEE--EecCCCHHHHHHHHHhCCEEE
Confidence 3444555443 33 357999999998874 55566666554 2 4444 334445679999999999999
Q ss_pred EeC-----CcccccCCCCChHHHH
Q 007936 354 VAR-----GDLGAQIPLEQVPSAQ 372 (584)
Q Consensus 354 IaR-----GDLg~ei~~e~V~~~Q 372 (584)
||. |+..-.+..+++-...
T Consensus 226 VGS~~K~~G~~~n~VD~~Rv~~fm 249 (254)
T PF03437_consen 226 VGSYFKKDGKWENPVDPERVRRFM 249 (254)
T ss_pred EeeeeeeCCEeCCcCCHHHHHHHH
Confidence 996 4555555555554433
No 173
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=74.41 E-value=29 Score=35.77 Aligned_cols=99 Identities=22% Similarity=0.313 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeE
Q 007936 308 AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVI 387 (584)
Q Consensus 308 aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvi 387 (584)
.++..++.++++. ..+..++-.=..++++-++++ -.+.+=||-+||. --.+++.|.+.|||+|
T Consensus 55 ~e~~~~L~~~~~~----~gi~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~-----------n~~lL~~~A~tgkPvI 117 (241)
T PF03102_consen 55 EEQHKELFEYCKE----LGIDFFSTPFDEESVDFLEEL--GVPAYKIASGDLT-----------NLPLLEYIAKTGKPVI 117 (241)
T ss_dssp HHHHHHHHHHHHH----TT-EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT------------HHHHHHHHTT-S-EE
T ss_pred HHHHHHHHHHHHH----cCCEEEECCCCHHHHHHHHHc--CCCEEEecccccc-----------CHHHHHHHHHhCCcEE
Confidence 4455555555532 224555544444444444333 2688888988885 1236778888999999
Q ss_pred EehhhhHhhhcCCCCChhhHHHHHHHH-HcccceEeecCCCCCCCChH
Q 007936 388 VASQLLESMIEYPTPTRAEVADVSEAV-RQRADALMLSGESAMGQFPD 434 (584)
Q Consensus 388 vATqmLeSMi~~p~PTrAEv~Dv~nav-~~G~D~imLs~ETa~G~yPv 434 (584)
++|- .-|-+|+.+..+++ ..|.+=+.|-.= +..||.
T Consensus 118 lSTG---------~stl~EI~~Av~~~~~~~~~~l~llHC--~s~YP~ 154 (241)
T PF03102_consen 118 LSTG---------MSTLEEIERAVEVLREAGNEDLVLLHC--VSSYPT 154 (241)
T ss_dssp EE-T---------T--HHHHHHHHHHHHHHCT--EEEEEE---SSSS-
T ss_pred EECC---------CCCHHHHHHHHHHHHhcCCCCEEEEec--CCCCCC
Confidence 9986 45778999999988 666655555332 336774
No 174
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=74.10 E-value=42 Score=32.91 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=63.9
Q ss_pred cCHhhhHHhHhcCCCEEEEcCCC-CHHHH-----HHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh--CCEEEEe
Q 007936 284 KDWLDIDFGITEGVDFIAISFVK-SAEVI-----NHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA--SDGAMVA 355 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSfV~-saedV-----~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~--sDGImIa 355 (584)
++.+|++.+++.|+|+|-+=|.. |+..+ +++++.+ ...+.-++=+-+. -++++.+++.. .|+|-++
T Consensus 7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~-----~~~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlh 80 (203)
T cd00405 7 TTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAAL-----PPFVKRVGVFVNE-DLEEILEIAEELGLDVVQLH 80 (203)
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhC-----CCCCcEEEEEeCC-CHHHHHHHHHhcCCCEEEEC
Confidence 35778999999999999998854 44444 4444433 2212333333332 25555666655 5899887
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCC
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQ-LNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESA 428 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~-~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa 428 (584)
-.| +.+ .++..++ .|++++-+-. ..+.. -.+...+...|+|.+++...|.
T Consensus 81 g~e-----~~~--------~~~~l~~~~~~~~i~~i~---------~~~~~-~~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 81 GDE-----SPE--------YCAQLRARLGLPVIKAIR---------VKDEE-DLEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred CCC-----CHH--------HHHHHHhhcCCcEEEEEe---------cCChh-hHHHhhhccccCCEEEEcCCCC
Confidence 433 111 1222232 4777773311 11111 1223456678999999965554
No 175
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=73.49 E-value=68 Score=30.28 Aligned_cols=125 Identities=13% Similarity=0.134 Sum_probs=65.9
Q ss_pred hHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcc---cccC-
Q 007936 289 IDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDL---GAQI- 363 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDL---g~ei- 363 (584)
++.+.+.|+|+|-++.-.. ....++... +....+-.-+.|.+- +.+.... +|.|++++..= ....
T Consensus 65 ~~~a~~~g~~~vh~~~~~~--~~~~~~~~~-----~~~~~~g~~~~t~~~---~~~~~~~g~d~i~~~~~~~~~~~~~~~ 134 (196)
T cd00564 65 VDLALAVGADGVHLGQDDL--PVAEARALL-----GPDLIIGVSTHSLEE---ALRAEELGADYVGFGPVFPTPTKPGAG 134 (196)
T ss_pred HHHHHHcCCCEEecCcccC--CHHHHHHHc-----CCCCEEEeeCCCHHH---HHHHhhcCCCEEEECCccCCCCCCCCC
Confidence 5567899999998886332 233444433 122344444444422 2333332 79999875421 1111
Q ss_pred CCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHH
Q 007936 364 PLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVL 440 (584)
Q Consensus 364 ~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m 440 (584)
+...+ +.+-+.+.....|++.+.. .+.. ++..+...|+|++.+.+--..-.-|.++++.+
T Consensus 135 ~~~~~----~~~~~~~~~~~~pv~a~GG----------i~~~---~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 135 PPLGL----ELLREIAELVEIPVVAIGG----------ITPE---NAAEVLAAGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCCCH----HHHHHHHHhCCCCEEEECC----------CCHH---HHHHHHHcCCCEEEEehHhhcCCCHHHHHHHH
Confidence 11111 1222223336789988742 2332 45566678999998875433334466666554
No 176
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=73.29 E-value=1.4e+02 Score=32.19 Aligned_cols=144 Identities=18% Similarity=0.237 Sum_probs=87.2
Q ss_pred CCCccCHhhhHHhH-hcCCCEEEE---------cCC------CCHHHHHHHHHHHHhhcCCCCceEEEee----cCHHHH
Q 007936 280 TISPKDWLDIDFGI-TEGVDFIAI---------SFV------KSAEVINHLKSYIAARSRDSDIAVIAKI----ESIDSL 339 (584)
Q Consensus 280 ~lt~kD~~dI~~al-~~gvD~I~l---------SfV------~saedV~~lr~~l~~~~~~~~i~IiAKI----Et~~av 339 (584)
.++..++..|..++ +.|+|.|=+ ||. ...++++++++.+ .+.++.+.+ -+.+
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~------~~~~~~~ll~pg~~~~~-- 91 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVV------KRAKVAVLLLPGIGTVH-- 91 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhC------CCCEEEEEeccCccCHH--
Confidence 34667777776655 579999877 333 3334444444433 224444433 2322
Q ss_pred hcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHH-HHcc
Q 007936 340 KNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEA-VRQR 417 (584)
Q Consensus 340 ~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~na-v~~G 417 (584)
.++.-.+. .|.|-|+ ....+.. .-++.++.+++.|..+.+. ++.+ ..-+..++.+.+.. ...|
T Consensus 92 -dl~~a~~~gvd~iri~-------~~~~e~d-~~~~~i~~ak~~G~~v~~~--l~~s----~~~~~e~l~~~a~~~~~~G 156 (333)
T TIGR03217 92 -DLKAAYDAGARTVRVA-------THCTEAD-VSEQHIGMARELGMDTVGF--LMMS----HMTPPEKLAEQAKLMESYG 156 (333)
T ss_pred -HHHHHHHCCCCEEEEE-------eccchHH-HHHHHHHHHHHcCCeEEEE--EEcc----cCCCHHHHHHHHHHHHhcC
Confidence 23333333 6777765 2233333 3578899999999887653 2222 23455677777765 4469
Q ss_pred cceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 418 ADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 418 ~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
+|++.+. +|+=..+|.+.-+..+.+....
T Consensus 157 a~~i~i~-DT~G~~~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 157 ADCVYIV-DSAGAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred CCEEEEc-cCCCCCCHHHHHHHHHHHHHhC
Confidence 9999997 8888889999888777775443
No 177
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=73.20 E-value=63 Score=33.39 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=70.2
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCC-EEEE-eCCcccccCC
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASD-GAMV-ARGDLGAQIP 364 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sD-GImI-aRGDLg~ei~ 364 (584)
+.++.+.+.|+|+|+++..- .++..++.+.+++ .+-+..++.-=.| ..+.+..|++.+| .|++ ++...+-+-
T Consensus 106 ~f~~~~~~aGvdgviipDlp-~ee~~~~~~~~~~--~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~TG~~- 179 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADLP-LEESGDLVEAAKK--HGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVTGAR- 179 (256)
T ss_pred HHHHHHHHcCCCEEEECCCC-hHHHHHHHHHHHH--CCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCCCCc-
Confidence 44677789999999999764 4778888888843 3333222232233 3577889999988 4443 432221110
Q ss_pred CCChHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 365 LEQVPSAQQKIVQLCRQ-LNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 365 ~e~V~~~Qk~II~~c~~-~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
.....-....++..++ .++|+++-. ..=|. .++..+...|+|+++..
T Consensus 180 -~~~~~~~~~~i~~lr~~~~~pi~vgf---------GI~~~---e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 180 -NRAASALNELVKRLKAYSAKPVLVGF---------GISKP---EQVKQAIDAGADGVIVG 227 (256)
T ss_pred -ccCChhHHHHHHHHHhhcCCCEEEeC---------CCCCH---HHHHHHHHcCCCEEEEC
Confidence 0122223444444444 377877642 22223 35677788899998875
No 178
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=72.78 E-value=48 Score=35.77 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=41.1
Q ss_pred HHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHH-cccc
Q 007936 343 EEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR-QRAD 419 (584)
Q Consensus 343 deIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~-~G~D 419 (584)
|.+.+. +|.+=||-+|+.- -.+++.+.+.|||+|+.|.| .|-+|+....+++. .|.+
T Consensus 103 d~l~~~~v~~~KIaS~~~~n-----------~pLL~~~A~~gkPvilStGm---------atl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 103 DFLEDLGVPRFKIPSGEITN-----------APLLKKIARFGKPVILSTGM---------ATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred HHHHhcCCCEEEECcccccC-----------HHHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHcCCC
Confidence 333344 6888888888732 23567778899999999864 46789988888877 4654
No 179
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=72.72 E-value=95 Score=30.06 Aligned_cols=135 Identities=22% Similarity=0.232 Sum_probs=75.4
Q ss_pred HhhhHHhHhcCCCEEEE-----cCCCC-HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCc
Q 007936 286 WLDIDFGITEGVDFIAI-----SFVKS-AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGD 358 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~l-----SfV~s-aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGD 358 (584)
.++++.+.+.|+|+|-+ +|+.+ ......++++-+ ..+..+.+..|....+ +-++.+.+. +|||.+--
T Consensus 14 ~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~--~~~~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh~-- 87 (210)
T TIGR01163 14 GEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRK--YTDLPIDVHLMVENPD--RYIEDFAEAGADIITVHP-- 87 (210)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHh--cCCCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEcc--
Confidence 45667788899999988 37644 332333333321 1122233446666543 446666666 79988731
Q ss_pred ccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC--CCCCC-CChHH
Q 007936 359 LGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG--ESAMG-QFPDK 435 (584)
Q Consensus 359 Lg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~--ETa~G-~yPve 435 (584)
+.. ......++.++++|..+++.. ++. |.. +...++..++|.+++.+ .+..| .++..
T Consensus 88 -------~~~-~~~~~~~~~~~~~g~~~~~~~--------~~~-t~~---e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 147 (210)
T TIGR01163 88 -------EAS-EHIHRLLQLIKDLGAKAGIVL--------NPA-TPL---EFLEYVLPDVDLVLLMSVNPGFGGQKFIPD 147 (210)
T ss_pred -------CCc-hhHHHHHHHHHHcCCcEEEEE--------CCC-CCH---HHHHHHHhhCCEEEEEEEcCCCCcccccHH
Confidence 111 223567789999998877652 111 222 22455567889887732 12233 56667
Q ss_pred HHHHHHHHHHH
Q 007936 436 ALTVLRSVSLR 446 (584)
Q Consensus 436 aV~~m~~I~~~ 446 (584)
.++.++++.+.
T Consensus 148 ~~~~i~~i~~~ 158 (210)
T TIGR01163 148 TLEKIREVRKM 158 (210)
T ss_pred HHHHHHHHHHH
Confidence 77766666433
No 180
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=72.50 E-value=7.3 Score=41.63 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=40.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHH
Q 007936 107 TKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRL 156 (584)
Q Consensus 107 tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~ 156 (584)
.-+.+.+|+.....+.++.++++|++++=+|++||..+.+.++++.+|+.
T Consensus 83 l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 83 LLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred ceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 33556667655567899999999999999999999998788888888763
No 181
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=72.42 E-value=52 Score=32.09 Aligned_cols=121 Identities=21% Similarity=0.170 Sum_probs=65.9
Q ss_pred CCCccCHhhhHHhHhcCCCEEEEc--CCCCHHHHHHHHHHHHhhcCCCCceEEE--eecCHHHHhcHHHHHHh-CCEEEE
Q 007936 280 TISPKDWLDIDFGITEGVDFIAIS--FVKSAEVINHLKSYIAARSRDSDIAVIA--KIESIDSLKNLEEIILA-SDGAMV 354 (584)
Q Consensus 280 ~lt~kD~~dI~~al~~gvD~I~lS--fV~saedV~~lr~~l~~~~~~~~i~IiA--KIEt~~av~NldeIl~~-sDGImI 354 (584)
..+.++...+..+++.|+|+|=+. + .++.-+..++.+-+. .. +..+++ |+-++... .+++..+. +|.|.+
T Consensus 8 ~~~~~~a~~~~~~l~~~v~~iev~~~l-~~~~g~~~i~~l~~~--~~-~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~v 82 (206)
T TIGR03128 8 LLDIEEALELAEKVADYVDIIEIGTPL-IKNEGIEAVKEMKEA--FP-DRKVLADLKTMDAGEY-EAEQAFAAGADIVTV 82 (206)
T ss_pred CCCHHHHHHHHHHcccCeeEEEeCCHH-HHHhCHHHHHHHHHH--CC-CCEEEEEEeeccchHH-HHHHHHHcCCCEEEE
Confidence 344555666666678899988773 3 222223333333221 11 223443 23333321 35665555 787776
Q ss_pred eCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 355 ARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 355 aRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
-- +.+ +..-+++++.|+++|++++++- ..|.. -..++..+...|+|.+.+.
T Consensus 83 h~-----~~~----~~~~~~~i~~~~~~g~~~~~~~---------~~~~t-~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 83 LG-----VAD----DATIKGAVKAAKKHGKEVQVDL---------INVKD-KVKRAKELKELGADYIGVH 133 (206)
T ss_pred ec-----cCC----HHHHHHHHHHHHHcCCEEEEEe---------cCCCC-hHHHHHHHHHcCCCEEEEc
Confidence 41 111 1234789999999999999851 11211 1244556667799988774
No 182
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.36 E-value=19 Score=36.21 Aligned_cols=76 Identities=16% Similarity=0.286 Sum_probs=48.0
Q ss_pred cCHHHHhcHHHHHHhCCEEEEeCC------------cccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC
Q 007936 334 ESIDSLKNLEEIILASDGAMVARG------------DLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPT 401 (584)
Q Consensus 334 Et~~av~NldeIl~~sDGImIaRG------------DLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~ 401 (584)
-|+++++.|+++.+..+.++||=| +.|+++= --|.....+++.|+++|.|++
T Consensus 38 ~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi--vSP~~~~~vi~~a~~~~i~~i-------------- 101 (201)
T PRK06015 38 RTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI--VSPGTTQELLAAANDSDVPLL-------------- 101 (201)
T ss_pred CCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE--ECCCCCHHHHHHHHHcCCCEe--------------
Confidence 455555555555544455555544 1111111 123456789999999999988
Q ss_pred CChhhHHHHHHHHHcccceEeecC
Q 007936 402 PTRAEVADVSEAVRQRADALMLSG 425 (584)
Q Consensus 402 PTrAEv~Dv~nav~~G~D~imLs~ 425 (584)
|--.=.+++..|...|+|.+=+=-
T Consensus 102 PG~~TptEi~~A~~~Ga~~vK~FP 125 (201)
T PRK06015 102 PGAATPSEVMALREEGYTVLKFFP 125 (201)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECC
Confidence 333445677999999999988753
No 183
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=72.25 E-value=8.5 Score=42.20 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=66.1
Q ss_pred CHhhhHHhHhcC-CCEEEEcCCC-----------------CHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHH
Q 007936 285 DWLDIDFGITEG-VDFIAISFVK-----------------SAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEII 346 (584)
Q Consensus 285 D~~dI~~al~~g-vD~I~lSfV~-----------------saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl 346 (584)
+.+++..+++.+ +|+|.++--. +..-+.++++++.....+.++.||+ --|+.+-.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 566888888877 9999999875 2334455666664323334677777 46777777777
Q ss_pred Hh----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehh
Q 007936 347 LA----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQ 391 (584)
Q Consensus 347 ~~----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATq 391 (584)
++ +|++.+||.=|-.-- ....+.|..-..|+++|||
T Consensus 302 kalaLGAd~V~ig~~~l~al~---------c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 302 KALALGADAVGIGTAALIALG---------CIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHHcCCCeeeechHHHHhcc---------hHHHHhcCCCCCCcccccC
Confidence 66 899999987653211 1245889999999999998
No 184
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=72.05 E-value=26 Score=36.53 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=57.6
Q ss_pred HhhhHHhHhc-CCCEEEEcC------CCCHHHHHHHHHHHHhhcCCCCceEEEeec---CHHHHhcHHHHHHh-CCEEEE
Q 007936 286 WLDIDFGITE-GVDFIAISF------VKSAEVINHLKSYIAARSRDSDIAVIAKIE---SIDSLKNLEEIILA-SDGAMV 354 (584)
Q Consensus 286 ~~dI~~al~~-gvD~I~lSf------V~saedV~~lr~~l~~~~~~~~i~IiAKIE---t~~av~NldeIl~~-sDGImI 354 (584)
.+.++|.++. |+++|++.= -=|.++=.++.+... ...+.++.||+-+- +.++++......+. +|++|+
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~-~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~ 102 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVA-EAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISA 102 (288)
T ss_pred HHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHH-HHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4456788999 999987642 223333333333332 12244689999884 45666666555555 899998
Q ss_pred eCCcccccCCCCChHHHHHHHHHHHHHc-CCCeEEe
Q 007936 355 ARGDLGAQIPLEQVPSAQQKIVQLCRQL-NKPVIVA 389 (584)
Q Consensus 355 aRGDLg~ei~~e~V~~~Qk~II~~c~~~-gKPvivA 389 (584)
.+-...- ..-+++...-+. .|.+. +.|+++-
T Consensus 103 ~~P~y~~-~~~~~i~~~~~~---v~~a~~~lpi~iY 134 (288)
T cd00954 103 ITPFYYK-FSFEEIKDYYRE---IIAAAASLPMIIY 134 (288)
T ss_pred eCCCCCC-CCHHHHHHHHHH---HHHhcCCCCEEEE
Confidence 6544321 222344444444 45556 7898874
No 185
>PRK12483 threonine dehydratase; Reviewed
Probab=71.96 E-value=43 Score=38.34 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=95.8
Q ss_pred ceEEEeecCHHHHhc---------HHHHHHh--CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHh
Q 007936 327 IAVIAKIESIDSLKN---------LEEIILA--SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLES 395 (584)
Q Consensus 327 i~IiAKIEt~~av~N---------ldeIl~~--sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeS 395 (584)
..|+.|.|+.+-.-. +..+.+. ..||+-+- -| ..=.-+...|+.+|.|+.+.
T Consensus 52 ~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~aS------aG-----Nha~gvA~aA~~lGi~~~Iv------ 114 (521)
T PRK12483 52 NQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITAS------AG-----NHAQGVALAAARLGVKAVIV------ 114 (521)
T ss_pred CEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEEC------CC-----HHHHHHHHHHHHhCCCEEEE------
Confidence 469999998765432 2222211 34554331 12 22345667899999999886
Q ss_pred hhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHH
Q 007936 396 MIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISE 475 (584)
Q Consensus 396 Mi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (584)
.|..+....+...-..|++.++. |....++++...+++++ +.++ ..++... + ....
T Consensus 115 -----mP~~tp~~Kv~~~r~~GAeVil~------g~~~d~a~~~A~~la~e-~g~~---------~v~pfdd--~-~via 170 (521)
T PRK12483 115 -----MPRTTPQLKVDGVRAHGGEVVLH------GESFPDALAHALKLAEE-EGLT---------FVPPFDD--P-DVIA 170 (521)
T ss_pred -----ECCCCCHHHHHHHHHCCCEEEEE------CCCHHHHHHHHHHHHHh-cCCe---------eeCCCCC--h-HHHH
Confidence 45555556677777889987654 33456777666555432 1111 1111111 1 2223
Q ss_pred HHHHHHHHHHhhcC--CcEEEEccCCchHHHHHhcc----CCCCcEEEEcCchh
Q 007936 476 EICNSAAKMANNLE--VDALFVYTKTGHMASLLSRC----RPDCPIFAFTSTTS 523 (584)
Q Consensus 476 ~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~lSr~----RP~~PIiavT~~~~ 523 (584)
.-..-+.|+.++++ .++||+..-+|.++.-++++ +|.+.||+|-+...
T Consensus 171 GqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a 224 (521)
T PRK12483 171 GQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDS 224 (521)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 33455777888774 79999999999988776654 79999999998543
No 186
>PRK06381 threonine synthase; Validated
Probab=71.59 E-value=58 Score=34.26 Aligned_cols=121 Identities=13% Similarity=0.122 Sum_probs=77.3
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+..|.|+++. .|.......+...-..|++.+...++ | -++++...+.+++ +.++.
T Consensus 77 alA~~aa~~G~~~~iv-----------vp~~~~~~~~~~l~~~GA~V~~~~~~-----~-~~~~~~a~~~~~~-~~~~~- 137 (319)
T PRK06381 77 SIAYFARLYGLKAVIF-----------IPRSYSNSRVKEMEKYGAEIIYVDGK-----Y-EEAVERSRKFAKE-NGIYD- 137 (319)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEcCCC-----H-HHHHHHHHHHHHH-cCcEe-
Confidence 4566899999999886 34333344556667799998888642 3 4566666665543 22221
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHHHHHhcc----------CCCCcEEEEcCc
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMASLLSRC----------RPDCPIFAFTST 521 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~lSr~----------RP~~PIiavT~~ 521 (584)
...... .+....+....-+.|+.++++ .++||+.+-+|.|+.-++++ .|.+.|+++.+.
T Consensus 138 --------~~~~~~-n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~ 208 (319)
T PRK06381 138 --------ANPGSV-NSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTS 208 (319)
T ss_pred --------cCCCCC-CcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeC
Confidence 111100 110112345556677777775 69999999999998877764 688899999885
Q ss_pred h
Q 007936 522 T 522 (584)
Q Consensus 522 ~ 522 (584)
.
T Consensus 209 ~ 209 (319)
T PRK06381 209 G 209 (319)
T ss_pred C
Confidence 4
No 187
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=71.53 E-value=32 Score=35.92 Aligned_cols=147 Identities=21% Similarity=0.404 Sum_probs=84.5
Q ss_pred ccCHhhhHHhHhcCCCEEEEcC--CC---------CHHHHHHHHHHHHhhcCCCCceEEEeecC----HHHHhcHHHHHH
Q 007936 283 PKDWLDIDFGITEGVDFIAISF--VK---------SAEVINHLKSYIAARSRDSDIAVIAKIES----IDSLKNLEEIIL 347 (584)
Q Consensus 283 ~kD~~dI~~al~~gvD~I~lSf--V~---------saedV~~lr~~l~~~~~~~~i~IiAKIEt----~~av~NldeIl~ 347 (584)
.+|+......++.|+|+|=+.+ -+ ..+...++.+.++.. .++.+++|+=- ..-..-+.+..+
T Consensus 111 ~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~---~~~Pv~vKL~p~~~~~~~~~~~~~~~~ 187 (295)
T PF01180_consen 111 IEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREA---VDIPVFVKLSPNFTDIEPFAIAAELAA 187 (295)
T ss_dssp HHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHH---HSSEEEEEE-STSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhc---cCCCEEEEecCCCCchHHHHHHHHhhc
Confidence 4555555555678999986643 11 223334444444321 25899999933 112222233322
Q ss_pred h-CCEEE----EeCCc-ccccC--CC-----------CChHHHHHHHHHHHHHcC--CCeEEehhhhHhhhcCCCCChhh
Q 007936 348 A-SDGAM----VARGD-LGAQI--PL-----------EQVPSAQQKIVQLCRQLN--KPVIVASQLLESMIEYPTPTRAE 406 (584)
Q Consensus 348 ~-sDGIm----IaRGD-Lg~ei--~~-----------e~V~~~Qk~II~~c~~~g--KPvivATqmLeSMi~~p~PTrAE 406 (584)
. .|||. +..++ +-.+- +. .--|.+.+.+-+.+++.+ .|+|-.+-+. -
T Consensus 188 ~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~------------s 255 (295)
T PF01180_consen 188 DGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIH------------S 255 (295)
T ss_dssp HTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--------------S
T ss_pred cceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcC------------C
Confidence 2 68887 55554 22221 11 234677888877777777 8877665433 3
Q ss_pred HHHHHHHHHcccceEeecCCC-CCCCChHHHHHHHHHHHHHHhhh
Q 007936 407 VADVSEAVRQRADALMLSGES-AMGQFPDKALTVLRSVSLRIEKW 450 (584)
Q Consensus 407 v~Dv~nav~~G~D~imLs~ET-a~G~yPveaV~~m~~I~~~aE~~ 450 (584)
-.|+..++..|||++.+..-. -.|. ...++|+++.|+|
T Consensus 256 ~~da~e~l~aGA~~Vqv~Sal~~~Gp------~~~~~i~~~L~~~ 294 (295)
T PF01180_consen 256 GEDAIEFLMAGASAVQVCSALIYRGP------GVIRRINRELEEW 294 (295)
T ss_dssp HHHHHHHHHHTESEEEESHHHHHHGT------THHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHheechhhhhcCc------HHHHHHHHHHHhh
Confidence 468899999999999997332 1132 3566777777765
No 188
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=71.49 E-value=1.1e+02 Score=31.18 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=72.4
Q ss_pred cCHhhhHHhHhcCCCEEEEcC--CCCHHHHHHHHHHHHhhcCCCCceEEEeecC---------------------HHHHh
Q 007936 284 KDWLDIDFGITEGVDFIAISF--VKSAEVINHLKSYIAARSRDSDIAVIAKIES---------------------IDSLK 340 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSf--V~saedV~~lr~~l~~~~~~~~i~IiAKIEt---------------------~~av~ 340 (584)
.+.+|++..++.|+|.|++.- .++++.+.++.+.+ +++ +++.-+.- ...++
T Consensus 84 ~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~-----g~~-~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~ 157 (253)
T PRK02083 84 RSVEDARRLLRAGADKVSINSAAVANPELISEAADRF-----GSQ-CIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVE 157 (253)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHc-----CCC-CEEEEEEeccCCCCCCEEEEEcCCceecCCCHHH
Confidence 357788888889999988763 45666676666554 111 22222211 11122
Q ss_pred cHHHHHHh-CCEEEEeCCc-ccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHH-cc
Q 007936 341 NLEEIILA-SDGAMVARGD-LGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR-QR 417 (584)
Q Consensus 341 NldeIl~~-sDGImIaRGD-Lg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~-~G 417 (584)
-++++.+. +|++++-.-+ =|..-++ + .+.+-+.++..+.|+|.+.-+. ...|+..+.. .|
T Consensus 158 ~~~~~~~~g~~~ii~~~i~~~g~~~g~-d----~~~i~~~~~~~~ipvia~GGv~------------s~~d~~~~~~~~G 220 (253)
T PRK02083 158 WAKEVEELGAGEILLTSMDRDGTKNGY-D----LELTRAVSDAVNVPVIASGGAG------------NLEHFVEAFTEGG 220 (253)
T ss_pred HHHHHHHcCCCEEEEcCCcCCCCCCCc-C----HHHHHHHHhhCCCCEEEECCCC------------CHHHHHHHHHhCC
Confidence 22333333 6777663211 1122222 2 2233344556789999885432 3456666665 59
Q ss_pred cceEeecCCCCCCCChHHHH
Q 007936 418 ADALMLSGESAMGQFPDKAL 437 (584)
Q Consensus 418 ~D~imLs~ETa~G~yPveaV 437 (584)
+|++|.+.==-.|.++.+.+
T Consensus 221 ~~gvivg~al~~~~~~~~~~ 240 (253)
T PRK02083 221 ADAALAASIFHFGEITIGEL 240 (253)
T ss_pred ccEEeEhHHHHcCCCCHHHH
Confidence 99999974444677776644
No 189
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=71.41 E-value=58 Score=34.70 Aligned_cols=120 Identities=17% Similarity=0.234 Sum_probs=65.4
Q ss_pred cCCCEEEEcC----C------CCHHHHHHHHHHHHhh--cCCCCceEEEeecCHHHHhcHHHHHHh-----CCEEEE-eC
Q 007936 295 EGVDFIAISF----V------KSAEVINHLKSYIAAR--SRDSDIAVIAKIESIDSLKNLEEIILA-----SDGAMV-AR 356 (584)
Q Consensus 295 ~gvD~I~lSf----V------~saedV~~lr~~l~~~--~~~~~i~IiAKIEt~~av~NldeIl~~-----sDGImI-aR 356 (584)
..+|+|-+.| + ++.+.+.++.+.++.. ..+.++.|++||---...+++.++++. +|||-+ +|
T Consensus 159 ~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 159 PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECC
Confidence 3589887755 1 2345565655555421 123458899999422122244444443 688874 32
Q ss_pred C----c-----cccc---C-CCCChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceE
Q 007936 357 G----D-----LGAQ---I-PLEQVPSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADAL 421 (584)
Q Consensus 357 G----D-----Lg~e---i-~~e~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~i 421 (584)
- + +... + |....+...+.+-...+.. +.|+|...- .-| ..|+..++..|||++
T Consensus 239 ~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GG---------I~t---~~da~e~l~aGAd~V 306 (327)
T cd04738 239 TISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGG---------ISS---GEDAYEKIRAGASLV 306 (327)
T ss_pred cccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECC---------CCC---HHHHHHHHHcCCCHH
Confidence 1 0 0000 0 1122344455555555555 578886643 223 357788888999999
Q ss_pred eecCC
Q 007936 422 MLSGE 426 (584)
Q Consensus 422 mLs~E 426 (584)
|+...
T Consensus 307 ~vg~~ 311 (327)
T cd04738 307 QLYTG 311 (327)
T ss_pred hccHH
Confidence 99743
No 190
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=71.35 E-value=1.4e+02 Score=34.35 Aligned_cols=171 Identities=18% Similarity=0.160 Sum_probs=100.7
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHh-HhcCCCEEEEcC-CCCHHHHHHHHHHHHhhcCCCCceEEEeecC-HHHHh--
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFG-ITEGVDFIAISF-VKSAEVINHLKSYIAARSRDSDIAVIAKIES-IDSLK-- 340 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~a-l~~gvD~I~lSf-V~saedV~~lr~~l~~~~~~~~i~IiAKIEt-~~av~-- 340 (584)
|||.+.|+. .+|..++..|... .+.|+|.|=+.| .-++.|.+.++.+.+. .. .+..+.+..-. ...+.
T Consensus 14 RDG~Q~~g~-----~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~-~l-~~~~i~~~~~~~~~~i~~~ 86 (524)
T PRK12344 14 RDGAQGEGI-----SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKEL-KL-KHAKLAAFGSTRRAGVSAE 86 (524)
T ss_pred CCcCcCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHh-CC-CCcEEEEEeeccccCCCcc
Confidence 555556553 3455666666554 568999998866 4577777777666531 11 23444443211 11221
Q ss_pred ---cHHHHHHh-CCE--EEEeCCcccc----cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHH
Q 007936 341 ---NLEEIILA-SDG--AMVARGDLGA----QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADV 410 (584)
Q Consensus 341 ---NldeIl~~-sDG--ImIaRGDLg~----ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv 410 (584)
.++..+.. .|. +++.-.|+-. ....+++...-+..++.++++|..|.+.+. ......+-+..-+.++
T Consensus 87 ~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e---~~~Da~r~d~~~l~~~ 163 (524)
T PRK12344 87 EDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAE---HFFDGYKANPEYALAT 163 (524)
T ss_pred cHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccc---cccccccCCHHHHHHH
Confidence 12333333 453 4444444322 123356777778899999999998866321 1111122233435565
Q ss_pred HH-HHHcccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 411 SE-AVRQRADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 411 ~n-av~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
+. +...|+|.+.|. +|.=..+|.++-+.++.+.+..
T Consensus 164 ~~~~~~~Gad~i~l~-DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 164 LKAAAEAGADWVVLC-DTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred HHHHHhCCCCeEEEc-cCCCCcCHHHHHHHHHHHHHhc
Confidence 55 456799999987 8888889999999988887655
No 191
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=71.35 E-value=95 Score=32.13 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=75.4
Q ss_pred hhHHhHhcCCCEEEEcCCC-CHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCC
Q 007936 288 DIDFGITEGVDFIAISFVK-SAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPL 365 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~-saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~ 365 (584)
.+..+.+.|+|+|.+---- +.+++.++.+..+ ..| ..+++-+-|.+-++ ...+. +|-|.+..-||... ..
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~--~lG--l~~lvevh~~~E~~---~A~~~gadiIgin~rdl~~~-~~ 196 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAH--SLG--LDVLVEVHDEEELE---RALKLGAPLIGINNRNLKTF-EV 196 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHH--HcC--CeEEEEeCCHHHHH---HHHHcCCCEEEECCCCcccc-cC
Confidence 5788899999998775433 5677877777773 332 45555555655332 22232 78888876677433 11
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHH
Q 007936 366 EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVL 440 (584)
Q Consensus 366 e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m 440 (584)
+ +..-.+++.... ...|+|.-. ..=|. .|+..+...|+|+++....-..-..|.++++-+
T Consensus 197 -d-~~~~~~l~~~~p-~~~~vIaeg---------GI~t~---ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 197 -D-LETTERLAPLIP-SDRLVVSES---------GIFTP---EDLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred -C-HHHHHHHHHhCC-CCCEEEEEe---------CCCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 1 222233333221 123555321 22233 355677778999999876666667788877644
No 192
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=70.87 E-value=94 Score=31.87 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=79.4
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCC--CceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccC
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDS--DIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQI 363 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~--~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei 363 (584)
.+.++.-.+.|+|+|.+-+ ++..++.++-+.++ ..|. ...|.-+=+| .++.++.++...|.|+| ++++=
T Consensus 81 ~~~i~~~~~aGad~It~H~-Ea~~~~~~~l~~Ik--~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~VLi----MtV~P 151 (228)
T PRK08091 81 FEVAKACVAAGADIVTLQV-EQTHDLALTIEWLA--KQKTTVLIGLCLCPET--PISLLEPYLDQIDLIQI----LTLDP 151 (228)
T ss_pred HHHHHHHHHhCCCEEEEcc-cCcccHHHHHHHHH--HCCCCceEEEEECCCC--CHHHHHHHHhhcCEEEE----EEECC
Confidence 4456666889999988865 65566777777774 4455 6677777787 56889999999998887 33333
Q ss_pred CC---CChHHHHHHHHHH---HHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCC-C-CChHH
Q 007936 364 PL---EQVPSAQQKIVQL---CRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAM-G-QFPDK 435 (584)
Q Consensus 364 ~~---e~V~~~Qk~II~~---c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~-G-~yPve 435 (584)
|. .-.+..-++|-+. -.+.|--+.+. +... =+ ..-+......|+|.+.+. |++ | ..|.+
T Consensus 152 GfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGG-I~---~~ti~~l~~aGaD~~V~G--SalF~~~d~~~ 218 (228)
T PRK08091 152 RTGTKAPSDLILDRVIQVENRLGNRRVEKLIS-------IDGS-MT---LELASYLKQHQIDWVVSG--SALFSQGELKT 218 (228)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhcCCCceEE-------EECC-CC---HHHHHHHHHCCCCEEEEC--hhhhCCCCHHH
Confidence 33 2233333333332 22334333221 1111 11 123355678899988775 344 2 23667
Q ss_pred HHHHHHH
Q 007936 436 ALTVLRS 442 (584)
Q Consensus 436 aV~~m~~ 442 (584)
.++.++.
T Consensus 219 ~i~~l~~ 225 (228)
T PRK08091 219 TLKEWKS 225 (228)
T ss_pred HHHHHHH
Confidence 7766654
No 193
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=70.63 E-value=87 Score=32.66 Aligned_cols=169 Identities=16% Similarity=0.156 Sum_probs=94.0
Q ss_pred cCCcccCCccccCCCCCccCHhhhHH-hHhcCCCEEEEc-CCCCH-----HHHHHHHHHHHhhcCCCCceEEEeecCHHH
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDF-GITEGVDFIAIS-FVKSA-----EVINHLKSYIAARSRDSDIAVIAKIESIDS 338 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~-al~~gvD~I~lS-fV~sa-----edV~~lr~~l~~~~~~~~i~IiAKIEt~~a 338 (584)
|||.+-++.. +|.+++..|.. -.+.|+|.|=+- |+... .|-.++.+.+.. . .+.++.+-.-+.++
T Consensus 7 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~--~-~~~~~~~~~~~~~d 78 (274)
T cd07938 7 RDGLQNEKTF-----IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR--R-PGVRYSALVPNLRG 78 (274)
T ss_pred CCCCcCCCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc--C-CCCEEEEECCCHHH
Confidence 5555555543 35455655544 467899999764 43322 244455555532 1 24556555544443
Q ss_pred HhcHHHHHHh-CCE--EEEeCCcc----cccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHH
Q 007936 339 LKNLEEIILA-SDG--AMVARGDL----GAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVS 411 (584)
Q Consensus 339 v~NldeIl~~-sDG--ImIaRGDL----g~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~ 411 (584)
+ +..++. .|. +++.-.|+ -.....++....-+..++.++++|+-+.+.-.+-=+.-...+-+...+.+++
T Consensus 79 v---~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~ 155 (274)
T cd07938 79 A---ERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVA 155 (274)
T ss_pred H---HHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHH
Confidence 3 333333 453 34433442 1112224555666778899999999875431100000011122344555655
Q ss_pred H-HHHcccceEeecCCCCCCCChHHHHHHHHHHHHH
Q 007936 412 E-AVRQRADALMLSGESAMGQFPDKALTVLRSVSLR 446 (584)
Q Consensus 412 n-av~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~ 446 (584)
. +...|+|.+-|. +|.=...|.++-+.+..+..+
T Consensus 156 ~~~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 156 ERLLDLGCDEISLG-DTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHHcCCCEEEEC-CCCCccCHHHHHHHHHHHHHH
Confidence 5 567899999997 777778899988888777543
No 194
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=70.22 E-value=28 Score=36.17 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=57.7
Q ss_pred HhhhHHhHhcCCCEEEEc------CCCCHHHHHHHHHHHHhhcCCCCceEEEeec---CHHHHhcHHHHHHh-CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAIS------FVKSAEVINHLKSYIAARSRDSDIAVIAKIE---SIDSLKNLEEIILA-SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lS------fV~saedV~~lr~~l~~~~~~~~i~IiAKIE---t~~av~NldeIl~~-sDGImIa 355 (584)
.+.+++.++.|+|+|++. +-=|.++=.++.+... +..+.++.|++-+- +.++++.....-+. +|++|+.
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~-~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~ 100 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVV-DLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVV 100 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHH-HHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 345678889999999884 3344444444444332 22345688999884 33444444444444 7999998
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+-... ..+-+.+...-+.|. .+.+.|+++-
T Consensus 101 pP~y~-~~~~~~i~~~~~~i~---~~~~~pi~lY 130 (285)
T TIGR00674 101 TPYYN-KPTQEGLYQHFKAIA---EEVDLPIILY 130 (285)
T ss_pred CCcCC-CCCHHHHHHHHHHHH---hcCCCCEEEE
Confidence 65542 122234444444454 4457898864
No 195
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=69.92 E-value=26 Score=38.40 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHc
Q 007936 307 SAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQL 382 (584)
Q Consensus 307 saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~ 382 (584)
+-++++++++.. +.+|+.| ++.+.++...+ +|+|+|+--- |-++. ..+.....+.+.+...
T Consensus 216 ~w~~i~~l~~~~-------~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG-Grq~~--~~~a~~~~L~ei~~av 280 (367)
T TIGR02708 216 SPRDIEEIAGYS-------GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG-GRQLD--GGPAAFDSLQEVAEAV 280 (367)
T ss_pred CHHHHHHHHHhc-------CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC-ccCCC--CCCcHHHHHHHHHHHh
Confidence 347778887765 3678888 45554444333 6899886321 33321 1121122233333333
Q ss_pred --CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCC
Q 007936 383 --NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGE 426 (584)
Q Consensus 383 --gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~E 426 (584)
.+|+|+...+- .-.|+..++..|+|++|+..-
T Consensus 281 ~~~i~vi~dGGIr------------~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 281 DKRVPIVFDSGVR------------RGQHVFKALASGADLVALGRP 314 (367)
T ss_pred CCCCcEEeeCCcC------------CHHHHHHHHHcCCCEEEEcHH
Confidence 37888764332 357999999999999998643
No 196
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=69.51 E-value=60 Score=32.84 Aligned_cols=131 Identities=12% Similarity=0.022 Sum_probs=77.6
Q ss_pred hHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEe--ecCHHHHhcHHHHHH-hCCEEEEeCCcccccCCC
Q 007936 289 IDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAK--IESIDSLKNLEEIIL-ASDGAMVARGDLGAQIPL 365 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAK--IEt~~av~NldeIl~-~sDGImIaRGDLg~ei~~ 365 (584)
++.|++.|+|+|-++ ++..++.++|+.+ +.+ .+|.- ..+.+. ..+..+ -+|.+.+|+= +. ....
T Consensus 80 ~dlA~~~~adGVHLg--~~d~~~~~~r~~~-----~~~-~iiG~s~~~s~~~---a~~A~~~gaDYv~~Gpv-~t-~tK~ 146 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLAALAEAIEKH-----APK-MIVGFGNLRDRHG---AMEIGELRPDYLFFGKL-GA-DNKP 146 (221)
T ss_pred HHHHHHhCCCEEEEC--ccccCHHHHHHhc-----CCC-CEEEecCCCCHHH---HHHhhhcCCCEEEECCC-CC-CCCC
Confidence 566788999999998 3334577777766 221 23332 222222 222222 2799999986 32 2211
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHH
Q 007936 366 EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSL 445 (584)
Q Consensus 366 e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~ 445 (584)
..-|.--..+-+.|+..+.||+---.+ + ..++......|+|++-..+.-..-..|.++++-+..++.
T Consensus 147 ~~~p~gl~~l~~~~~~~~iPvvAIGGI----------~---~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 147 EAHPRNLSLAEWWAEMIEIPCIVQAGS----------D---LASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred CCCCCChHHHHHHHHhCCCCEEEEeCC----------C---HHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHh
Confidence 111111111223566778998754221 1 245566778899999998887777889999987777653
No 197
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=69.51 E-value=32 Score=36.22 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=56.0
Q ss_pred HhhhHHhHhcCCCEEEEc------CCCCHHHHHHHHHHHHhhcCCCCceEEEeec--CHHHHhcHHHHHHh-CCEEEEeC
Q 007936 286 WLDIDFGITEGVDFIAIS------FVKSAEVINHLKSYIAARSRDSDIAVIAKIE--SIDSLKNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lS------fV~saedV~~lr~~l~~~~~~~~i~IiAKIE--t~~av~NldeIl~~-sDGImIaR 356 (584)
.+.++|.++.|+|+|++. +--|.++=.++.+... ...+.++.||+-+- +.++++.....-+. +|++|+.+
T Consensus 31 ~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~-~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 31 REHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAV-ETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLP 109 (303)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHH-HHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 345678899999999873 2334444444433332 22345688888873 23344433333333 79999987
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 357 GDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 357 GDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
-.+.. ..-+.+....+. .|.+.+.|+++-
T Consensus 110 P~y~~-~~~~~i~~~f~~---va~~~~lpi~lY 138 (303)
T PRK03620 110 PYLTE-APQEGLAAHVEA---VCKSTDLGVIVY 138 (303)
T ss_pred CCCCC-CCHHHHHHHHHH---HHHhCCCCEEEE
Confidence 65431 122334444444 455568998874
No 198
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=69.36 E-value=50 Score=34.20 Aligned_cols=119 Identities=14% Similarity=0.195 Sum_probs=73.0
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 373 QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 373 k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
.-+...|+..|.++++-. |....-..+...-..|++.+...++ ..++++...++..+- .++
T Consensus 78 ~alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~l~~~Ga~vi~~~~~------~~~~~~~a~~la~~~-~~~- 138 (304)
T cd01562 78 QGVAYAAKLLGIPATIVM-----------PETAPAAKVDATRAYGAEVVLYGED------FDEAEAKARELAEEE-GLT- 138 (304)
T ss_pred HHHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCC------HHHHHHHHHHHHHhc-CCE-
Confidence 356778999999998862 3322333455677789997777642 345555544443321 111
Q ss_pred hhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC-CcEEEEccCCchHHHHHhcc----CCCCcEEEEcCc
Q 007936 453 EEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE-VDALFVYTKTGHMASLLSRC----RPDCPIFAFTST 521 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~-a~aIvv~T~sG~tA~~lSr~----RP~~PIiavT~~ 521 (584)
...+... +.. .......+.++..+++ .+.||+.+-+|.|..-++++ .|...|+++.+.
T Consensus 139 --------~~~~~~n--~~~-~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~ 201 (304)
T cd01562 139 --------FIHPFDD--PDV-IAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPE 201 (304)
T ss_pred --------EeCCCCC--cch-hccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 1111111 111 1222344677777764 79999999999988766554 788999999985
No 199
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=69.21 E-value=39 Score=34.71 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=58.5
Q ss_pred HhhhHHhHhcCCCEEEEcC------CCCHHHHHHHHHHHHhhcCCCCceEEEeecC---HHHHhcHHHHHHh-CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAISF------VKSAEVINHLKSYIAARSRDSDIAVIAKIES---IDSLKNLEEIILA-SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSf------V~saedV~~lr~~l~~~~~~~~i~IiAKIEt---~~av~NldeIl~~-sDGImIa 355 (584)
.+.++|.++.|+|+|++.= --|.++=.++.+...+ ..+.++.|++.+=+ .++++-....-+. +|++|+.
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~-~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~ 99 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVE-AVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVV 99 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHH-HhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEC
Confidence 4556888999999988642 2344554444444432 23456889998843 3344444444433 7999998
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+-.+.. .+-+.+...-+.|++ +.+.|+++-
T Consensus 100 pP~y~~-~~~~~~~~~~~~ia~---~~~~pi~iY 129 (281)
T cd00408 100 PPYYNK-PSQEGIVAHFKAVAD---ASDLPVILY 129 (281)
T ss_pred CCcCCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 765533 233444444444444 468898863
No 200
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=68.85 E-value=59 Score=33.03 Aligned_cols=143 Identities=15% Similarity=0.035 Sum_probs=83.7
Q ss_pred HhhhHHhHhcCCCEEEEcCCC----------CHHHHHHHHHHHHhhcCCCCceEEE----------eec---CHHHHhcH
Q 007936 286 WLDIDFGITEGVDFIAISFVK----------SAEVINHLKSYIAARSRDSDIAVIA----------KIE---SIDSLKNL 342 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~----------saedV~~lr~~l~~~~~~~~i~IiA----------KIE---t~~av~Nl 342 (584)
.+.++++-++|+|+|=+++.. +.+++.++++.++.. |-.+.-+. .-+ ..++++.+
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~ 96 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYET--GVRIPSMCLSGHRRFPFGSRDPATRERALEIM 96 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHc--CCCceEEecccccCcCCCCCCHHHHHHHHHHH
Confidence 456788899999999887543 467899999999543 32222111 001 12467777
Q ss_pred HHHHHh-----CCEEEEeCCcccccC----CCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHH
Q 007936 343 EEIILA-----SDGAMVARGDLGAQI----PLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEA 413 (584)
Q Consensus 343 deIl~~-----sDGImIaRGDLg~ei----~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~na 413 (584)
...++. ++.|.+..++...+- .++.+...-+.+...+.++|..+.+ |-|-..-.++.++..++..+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l-----E~~~~~~~~~~~~~~~l~~~ 171 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV-----EIMDTPFMNSISKWKKWDKE 171 (284)
T ss_pred HHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE-----EecCccccCCHHHHHHHHHH
Confidence 777766 467776533321111 1234444556778888888876664 44434446777777777777
Q ss_pred HHcccceEeecCCCC----CCCChHHHH
Q 007936 414 VRQRADALMLSGESA----MGQFPDKAL 437 (584)
Q Consensus 414 v~~G~D~imLs~ETa----~G~yPveaV 437 (584)
+ +.+.+-+.-++. .|..|.+.+
T Consensus 172 v--~~~~~~~~~D~~h~~~~~~~~~~~l 197 (284)
T PRK13210 172 I--DSPWLTVYPDVGNLSAWGNDVWSEL 197 (284)
T ss_pred c--CCCceeEEecCChhhhcCCCHHHHH
Confidence 6 344455544442 355555433
No 201
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=68.67 E-value=95 Score=32.92 Aligned_cols=127 Identities=14% Similarity=0.208 Sum_probs=84.5
Q ss_pred hHHhHhcCCCEEEE-----c---------CCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEE
Q 007936 289 IDFGITEGVDFIAI-----S---------FVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAM 353 (584)
Q Consensus 289 I~~al~~gvD~I~l-----S---------fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGIm 353 (584)
.+.|-+.|+-.|++ + -.++++||+++++.. +++||+++---- +...+++.++ +|.|
T Consensus 21 a~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V-------~iPVIGi~K~~~-~~Ea~~L~eaGvDiI- 91 (283)
T cd04727 21 ARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV-------SIPVMAKVRIGH-FVEAQILEALGVDMI- 91 (283)
T ss_pred HHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC-------CCCeEEeeehhH-HHHHHHHHHcCCCEE-
Confidence 34455666666655 2 346778888888766 488998874322 7777777776 7877
Q ss_pred EeCCcccccCCCCChHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCC
Q 007936 354 VARGDLGAQIPLEQVPSAQQKIVQLCRQ-LNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQF 432 (584)
Q Consensus 354 IaRGDLg~ei~~e~V~~~Qk~II~~c~~-~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~y 432 (584)
| ..+-+-+ -..++...+. ++.|+.-- -+.+.+.-+++..|+|.|=-+.|--.| +
T Consensus 92 ----D-aT~r~rP-----~~~~~~~iK~~~~~l~MAD--------------~stleEal~a~~~Gad~I~TTl~gyT~-~ 146 (283)
T cd04727 92 ----D-ESEVLTP-----ADEEHHIDKHKFKVPFVCG--------------ARNLGEALRRISEGAAMIRTKGEAGTG-N 146 (283)
T ss_pred ----e-ccCCCCc-----HHHHHHHHHHHcCCcEEcc--------------CCCHHHHHHHHHCCCCEEEecCCCCCC-c
Confidence 4 2232222 2445555554 37776632 133556678999999999888885555 6
Q ss_pred hHHHHHHHHHHHHHHhh
Q 007936 433 PDKALTVLRSVSLRIEK 449 (584)
Q Consensus 433 PveaV~~m~~I~~~aE~ 449 (584)
-.++|+-+++|-.++..
T Consensus 147 ~~~~~~~~~~i~~~i~~ 163 (283)
T cd04727 147 VVEAVRHMRAVNGEIRK 163 (283)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999888875
No 202
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=68.37 E-value=83 Score=33.07 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=87.2
Q ss_pred HHHHhcHHHHHHh-----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhh--HH
Q 007936 336 IDSLKNLEEIILA-----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAE--VA 408 (584)
Q Consensus 336 ~~av~NldeIl~~-----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAE--v~ 408 (584)
..++.|++++++. +|+++.-+|=+..--+ -..+.+|.|+- |.++.+-..+++-+ +.
T Consensus 39 ~~gl~d~e~~v~~v~~~g~dav~~~~G~~~~~~~--------------~y~~dvplivk---l~~~t~l~~~~~~~~~~~ 101 (265)
T COG1830 39 IEGLEDPENIVAKVAEAGADAVAMTPGIARSVHR--------------GYAHDVPLIVK---LNGSTSLSPDPNDQVLVA 101 (265)
T ss_pred cccccCHHHHHHHHHhcCCCEEEecHhHHhhcCc--------------cccCCcCEEEE---eccccccCCCcccceeee
Confidence 3577777777755 5777765553322111 12346788873 55553322222322 47
Q ss_pred HHHHHHHcccceEee----cCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHH
Q 007936 409 DVSEAVRQRADALML----SGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKM 484 (584)
Q Consensus 409 Dv~nav~~G~D~imL----s~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~ 484 (584)
.|-.|+..|+|++-. -+|+- -+.++.+.++..++.+|=--.. ...++.-...........+ ...-|.++
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp~v-~~~YpRg~~~~~~~~~d~~-~v~~aaRl 174 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETE-----REMIENISQVVEDAHELGMPLV-AWAYPRGPAIKDEYHRDAD-LVGYAARL 174 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCcch-----HHHHHHHHHHHHHHHHcCCceE-EEEeccCCcccccccccHH-HHHHHHHH
Confidence 777899999999754 34444 6888888888888887411000 0011100000000122333 44556788
Q ss_pred HhhcCCcEE-EEccCCchHHHHHhccCCCCcEEE
Q 007936 485 ANNLEVDAL-FVYTKTGHMASLLSRCRPDCPIFA 517 (584)
Q Consensus 485 A~~l~a~aI-vv~T~sG~tA~~lSr~RP~~PIia 517 (584)
|.+++||.| .-||.+-.+=+.+-+..| +||+.
T Consensus 175 aaelGADIiK~~ytg~~e~F~~vv~~~~-vpVvi 207 (265)
T COG1830 175 AAELGADIIKTKYTGDPESFRRVVAACG-VPVVI 207 (265)
T ss_pred HHHhcCCeEeecCCCChHHHHHHHHhCC-CCEEE
Confidence 999999955 234544466666777777 66654
No 203
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.21 E-value=49 Score=33.38 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=65.1
Q ss_pred EEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhC-C--EEEEeCC------------cccccCC
Q 007936 300 IAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILAS-D--GAMVARG------------DLGAQIP 364 (584)
Q Consensus 300 I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~s-D--GImIaRG------------DLg~ei~ 364 (584)
|.+=...++++...+.+.|.+. |-. .+=.-.-|+.+++.|.++.+.. | .++||=| +.|+++=
T Consensus 16 i~vir~~~~~~a~~~~~al~~~--Gi~-~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 16 VAVVRGESKEEALKISLAVIKG--GIK-AIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred EEEEECCCHHHHHHHHHHHHHC--CCC-EEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 4444556777777777766432 211 1222234677777777777654 2 4777765 1222221
Q ss_pred CCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 365 LEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 365 ~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
+ -|.....+++.|++.|.|++ |--.-.+++..|...|+|.+-+
T Consensus 93 v--sP~~~~~v~~~~~~~~i~~i--------------PG~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 93 V--SPSFNRETAKICNLYQIPYL--------------PGCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred E--CCCCCHHHHHHHHHcCCCEE--------------CCcCCHHHHHHHHHcCCCEEEE
Confidence 1 23455789999999999998 3333346668888999999998
No 204
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=67.97 E-value=77 Score=33.11 Aligned_cols=122 Identities=9% Similarity=0.066 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+.+|.|+++. .|..+........-..|++.+...++ +.| .++.+..+++.++-..+
T Consensus 73 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~~~--- 134 (290)
T TIGR01138 73 ALAMIAALKGYRMKLL-----------MPDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGEGK--- 134 (290)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCCC---
Confidence 4556899999999986 35444444556667789998877542 112 23444444443221111
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHHHHHh----ccCCCCcEEEEcCch
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTT 522 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~ 522 (584)
..++... +..+.--...-+.|+.++++ .++||+.+-+|.++.-++ .+.|.+.|+++-+..
T Consensus 135 -------~~~~~~~--~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~ 200 (290)
T TIGR01138 135 -------LLDQFNN--PDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEE 200 (290)
T ss_pred -------CCCccCC--cccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 1111111 11111112445667777774 799999999998875544 457999999999864
No 205
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=67.96 E-value=20 Score=41.03 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHh-----hcCCCCceEEEeecCHHHHhcHHHHHHhC-C---EEEEe-----------
Q 007936 296 GVDFIAISFVKSAEVINHLKSYIAA-----RSRDSDIAVIAKIESIDSLKNLEEIILAS-D---GAMVA----------- 355 (584)
Q Consensus 296 gvD~I~lSfV~saedV~~lr~~l~~-----~~~~~~i~IiAKIEt~~av~NldeIl~~s-D---GImIa----------- 355 (584)
+--|+.+|+.++.++++--.+.+.. +-....|++-..|||..|.=|++||+-.. | |+=-|
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 3458899999999999887777643 11123599999999999999999999762 2 44333
Q ss_pred -----------CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCCh-------hhHHHH----HHH
Q 007936 356 -----------RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTR-------AEVADV----SEA 413 (584)
Q Consensus 356 -----------RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTr-------AEv~Dv----~na 413 (584)
|..++++.| =+-.+.+..++.|.+.|...+- =|. .-.|.+ ..+..| ..-
T Consensus 283 ~~~~~~~vlPdR~~v~m~~p--fm~aY~~llv~tch~Rga~a~g------Gma-a~ip~~~d~~~~~~a~~~v~~dK~rE 353 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQP--FMRAYEDLLVRTCHRRGAHAMG------GMA-AFIPIGKDPWANPDAMAKVRADKERE 353 (526)
T ss_dssp TCCGCCBB---GGGGGCGSH--HHHHHHHHHHHHHHHTT-HHHT------TCT-TTSEEEEEEHHBTTCHHHHHHHTHHH
T ss_pred hhhCCCccccccccccccCH--HHHHHHHHHHHHHhhcCCcccc------CCc-cccCCCCChhhhHHHHHHHHHHHHHH
Confidence 344444444 3678889999999999865321 111 112322 222233 336
Q ss_pred HHcccceEeec
Q 007936 414 VRQRADALMLS 424 (584)
Q Consensus 414 v~~G~D~imLs 424 (584)
+.+|+||-+..
T Consensus 354 ~~~G~dg~WVa 364 (526)
T PF01274_consen 354 AKAGFDGAWVA 364 (526)
T ss_dssp HHTT-SEEEES
T ss_pred HhcCCCccccc
Confidence 78999998885
No 206
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=67.85 E-value=92 Score=33.19 Aligned_cols=115 Identities=13% Similarity=0.221 Sum_probs=77.2
Q ss_pred EEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHH
Q 007936 301 AISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLC 379 (584)
Q Consensus 301 ~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c 379 (584)
.+.-.+++++|.++++.. +++||+|+---- +...+.+.+. +|.| | ..+..-+ -..++...
T Consensus 56 g~~Rm~~p~~I~aIk~~V-------~iPVigk~Righ-~~Ea~~L~~~GvDiI-----D-~Te~lrp-----ad~~~~~~ 116 (293)
T PRK04180 56 GVARMADPKMIEEIMDAV-------SIPVMAKARIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADEEYHID 116 (293)
T ss_pred CeeecCCHHHHHHHHHhC-------CCCeEEeehhhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-----hHHHHHHH
Confidence 344568899999888866 478888763211 5555555555 7877 4 2222211 22333333
Q ss_pred HH-cCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhh
Q 007936 380 RQ-LNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEK 449 (584)
Q Consensus 380 ~~-~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~ 449 (584)
+. ++.|+..- -..+.+.-+++..|+|.|--+||.-.|. -+|||+-|+.|..++-.
T Consensus 117 K~~f~~~fmad--------------~~~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~ 172 (293)
T PRK04180 117 KWDFTVPFVCG--------------ARNLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRR 172 (293)
T ss_pred HHHcCCCEEcc--------------CCCHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHH
Confidence 33 47776632 1345666789999999999999999998 69999999999888765
No 207
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=67.81 E-value=1.6e+02 Score=30.64 Aligned_cols=153 Identities=13% Similarity=0.093 Sum_probs=90.6
Q ss_pred CCccCHhhhHHh-HhcCCCEEEEcCC---------CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHH--------Hh-c
Q 007936 281 ISPKDWLDIDFG-ITEGVDFIAISFV---------KSAEVINHLKSYIAARSRDSDIAVIAKIESIDS--------LK-N 341 (584)
Q Consensus 281 lt~kD~~dI~~a-l~~gvD~I~lSfV---------~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~a--------v~-N 341 (584)
++..++..+..+ .+.|+|.|=+-+- -+.++.+.++.+.+. ..+..+..++.-.+.-+ .+ .
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~-~~~~~l~~~~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKA-MPNTPLQMLLRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHh-CCCCceehhcccccccCccCCCcHHHHHH
Confidence 455666666544 4689999855441 255555555554421 11223333333221111 11 2
Q ss_pred HHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHH-HHHcccc
Q 007936 342 LEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE-AVRQRAD 419 (584)
Q Consensus 342 ldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av~~G~D 419 (584)
++...+. .|.|-|. .|..++ ..-+..++.++++|+-+.++ .+|...++.+.+.+.+++. +...|+|
T Consensus 97 i~~~~~~g~~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~----i~~~~~~~~~~~~~~~~~~~~~~~Ga~ 164 (275)
T cd07937 97 VEKAAKNGIDIFRIF-------DALNDV-RNLEVAIKAVKKAGKHVEGA----ICYTGSPVHTLEYYVKLAKELEDMGAD 164 (275)
T ss_pred HHHHHHcCCCEEEEe-------ecCChH-HHHHHHHHHHHHCCCeEEEE----EEecCCCCCCHHHHHHHHHHHHHcCCC
Confidence 2233333 4666653 344444 34456778889999877653 1344456777788877766 4566999
Q ss_pred eEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 420 ALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 420 ~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
.+.|. +|.=.-.|.+.-+.++.+.++.
T Consensus 165 ~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 165 SICIK-DMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred EEEEc-CCCCCCCHHHHHHHHHHHHHhC
Confidence 99998 8888888999988888886543
No 208
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=67.79 E-value=51 Score=34.84 Aligned_cols=113 Identities=21% Similarity=0.325 Sum_probs=65.4
Q ss_pred hhhHHhHhcCCCEEEE------------------cCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCH-------HHHhc
Q 007936 287 LDIDFGITEGVDFIAI------------------SFVKSAEVINHLKSYIAARSRDSDIAVIAKIESI-------DSLKN 341 (584)
Q Consensus 287 ~dI~~al~~gvD~I~l------------------SfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~-------~av~N 341 (584)
+.++...+.|+.+|.+ ..+...+.+..++...+. ..+.++.|+|..|.. ++++.
T Consensus 96 r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a-~~~~~~~IiARTDa~~~~~~~~eAi~R 174 (285)
T TIGR02320 96 RLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA-QTTEDFMIIARVESLILGKGMEDALKR 174 (285)
T ss_pred HHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh-ccCCCeEEEEecccccccCCHHHHHHH
Confidence 3456667899999998 334445556666655543 235679999997765 44444
Q ss_pred HHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcC-----CCeEEehhhhHhhhcCCCCChhhHHHHHHHHH
Q 007936 342 LEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLN-----KPVIVASQLLESMIEYPTPTRAEVADVSEAVR 415 (584)
Q Consensus 342 ldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~g-----KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~ 415 (584)
...-.++ +|+||+- .+... .+.+.+.|++.. +|+.+. |...|.++.+|.. .
T Consensus 175 a~ay~eAGAD~ifv~-------~~~~~----~~ei~~~~~~~~~~~p~~pl~~~------~~~~~~~~~~eL~------~ 231 (285)
T TIGR02320 175 AEAYAEAGADGIMIH-------SRKKD----PDEILEFARRFRNHYPRTPLVIV------PTSYYTTPTDEFR------D 231 (285)
T ss_pred HHHHHHcCCCEEEec-------CCCCC----HHHHHHHHHHhhhhCCCCCEEEe------cCCCCCCCHHHHH------H
Confidence 4444444 8999984 11111 234444455443 477531 2334555555444 4
Q ss_pred cccceEee
Q 007936 416 QRADALML 423 (584)
Q Consensus 416 ~G~D~imL 423 (584)
.|+.-+..
T Consensus 232 lG~~~v~~ 239 (285)
T TIGR02320 232 AGISVVIY 239 (285)
T ss_pred cCCCEEEE
Confidence 58887654
No 209
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=67.49 E-value=1.1e+02 Score=34.49 Aligned_cols=178 Identities=21% Similarity=0.238 Sum_probs=94.4
Q ss_pred EeecCCCCceEeeCCCEEEEeecccCCCCCCCEEEe-cccchhcccCCCCEEEEeCCeeEEEEEEEeCC-eEEEEEEcC-
Q 007936 177 MGDLSGPPSARAEDGEIWTFTVRAFDSPRPERTITV-NYDGFAEDVKVGDELLVDGGMVRFEVIEKIGP-DVKCRCTDP- 253 (584)
Q Consensus 177 ~G~~~~~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v-~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~-~i~c~v~~~- 253 (584)
.|++.+ +....--.++|+.++...... ..+|- ++..+--..+.|+.|++-+ ++ .+-+-.|+ .+.|.-..+
T Consensus 29 ~GEISn---~t~~~sgH~YFtLKD~~A~i~-c~mf~~~~~~l~f~p~eG~~V~v~G-~i--s~Y~~rG~YQi~~~~~~p~ 101 (440)
T COG1570 29 RGEISN---FTRPASGHLYFTLKDERAQIR-CVMFKGNNRRLKFRPEEGMQVLVRG-KI--SLYEPRGDYQIVAESMEPA 101 (440)
T ss_pred EEEecC---CccCCCccEEEEEccCCceEE-EEEEcCcccccCCCccCCCEEEEEE-EE--EEEcCCCceEEEEecCCcC
Confidence 466754 443332389999874322211 23333 3334444588899999853 22 22222222 233433332
Q ss_pred --cee-------C---CCceeeeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhh
Q 007936 254 --GLL-------L---PRANLTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAAR 321 (584)
Q Consensus 254 --G~l-------~---s~Kgvnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~ 321 (584)
|.| + ...|.. =|....+||.++.+ =+|+-| .+..-++.+...++.+
T Consensus 102 G~G~L~~~~E~lK~kL~aEGlF-------d~~~KkpLP~~p~~-------------IGVITS--~tgAairDIl~~~~rR 159 (440)
T COG1570 102 GLGALYLAFEQLKAKLAAEGLF-------DPERKKPLPFFPKK-------------IGVITS--PTGAALRDILHTLSRR 159 (440)
T ss_pred ChhHHHHHHHHHHHHHHhCCCc-------ChhhcCCCCCCCCe-------------EEEEcC--CchHHHHHHHHHHHhh
Confidence 211 0 112332 45555677776532 234444 7778888888888543
Q ss_pred cCCCCceEEEeecCHHHHhcHHHHHHh---------CCEEEEeCCcccccCCCCChHHHHHH-HHHHHHHcCCCeEEe
Q 007936 322 SRDSDIAVIAKIESIDSLKNLEEIILA---------SDGAMVARGDLGAQIPLEQVPSAQQK-IVQLCRQLNKPVIVA 389 (584)
Q Consensus 322 ~~~~~i~IiAKIEt~~av~NldeIl~~---------sDGImIaRGDLg~ei~~e~V~~~Qk~-II~~c~~~gKPvivA 389 (584)
.. .+.|+.-==+.+|-..-.||+++ .|.+|||||-=+ +|++...-++ ++++.-+..+|||-|
T Consensus 160 ~P--~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS----iEDLW~FNdE~vaRAi~~s~iPvISA 231 (440)
T COG1570 160 FP--SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS----IEDLWAFNDEIVARAIAASRIPVISA 231 (440)
T ss_pred CC--CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch----HHHHhccChHHHHHHHHhCCCCeEee
Confidence 22 23433333344555555555554 699999999543 3444444444 445556678999976
No 210
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=67.21 E-value=85 Score=32.50 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+++|.|+.+. .|..+...-+...-..|++.+...+... + ...++++...++.++-+.+
T Consensus 67 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~~~--- 130 (291)
T cd01561 67 GLAMVAAAKGYRFIIV-----------MPETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETPNA--- 130 (291)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCCCc---
Confidence 4566899999999886 3554445555667778999887763311 1 1255665555543321111
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHH-HHHHHHHhhcC--CcEEEEccCCchHHHH----HhccCCCCcEEEEcCch
Q 007936 454 EKRHEAMELPDVGSSFAESISEEIC-NSAAKMANNLE--VDALFVYTKTGHMASL----LSRCRPDCPIFAFTSTT 522 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia-~sav~~A~~l~--a~aIvv~T~sG~tA~~----lSr~RP~~PIiavT~~~ 522 (584)
+...+.. .+.. .+.-. ..+.|+.++++ .+.||+.+-+|.++.- +..+.|...|++|-+..
T Consensus 131 ------~~~~~~~--~p~~-~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 197 (291)
T cd01561 131 ------FWLNQFE--NPAN-PEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVG 197 (291)
T ss_pred ------EEecCCC--CchH-HHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 1111111 1111 12222 44677777775 7999999999998754 44567999999999864
No 211
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=67.15 E-value=1.4e+02 Score=29.59 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=74.6
Q ss_pred CccCHhhhH-HhHhcCCCEEEEc-----CCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhc---HHHHHHh-CCE
Q 007936 282 SPKDWLDID-FGITEGVDFIAIS-----FVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKN---LEEIILA-SDG 351 (584)
Q Consensus 282 t~kD~~dI~-~al~~gvD~I~lS-----fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~N---ldeIl~~-sDG 351 (584)
+..|+.++. ...+.|+++|.+. |=.+.++++.+++.. +++|+.| ..+.+ +++..+. +|+
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-------~iPi~~~----~~i~~~~~v~~~~~~Gad~ 97 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-------SLPVLRK----DFIIDPYQIYEARAAGADA 97 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-------CCCEEEC----CeecCHHHHHHHHHcCCCE
Confidence 445666664 4467799999763 446788888888865 3666654 23333 4444444 899
Q ss_pred EEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCC
Q 007936 352 AMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGES 427 (584)
Q Consensus 352 ImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ET 427 (584)
+.++--||. . ..-+.+++.|...|..+++.+. +-. ++..+...|+|.+..++.+
T Consensus 98 v~l~~~~~~----~----~~~~~~~~~~~~~g~~~~v~v~-----------~~~---e~~~~~~~g~~~i~~t~~~ 151 (217)
T cd00331 98 VLLIVAALD----D----EQLKELYELARELGMEVLVEVH-----------DEE---ELERALALGAKIIGINNRD 151 (217)
T ss_pred EEEeeccCC----H----HHHHHHHHHHHHcCCeEEEEEC-----------CHH---HHHHHHHcCCCEEEEeCCC
Confidence 998644442 1 4457788888889998876532 223 3567778899999988543
No 212
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=67.08 E-value=12 Score=41.90 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=39.6
Q ss_pred eEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHH
Q 007936 108 KLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRR 155 (584)
Q Consensus 108 KIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 155 (584)
.+=+.+|..-.+.+..+.|+++|++++-++.+||..+...+.|+++|+
T Consensus 214 ~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 214 IVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 345577776677899999999999999999999988877777777765
No 213
>PRK07334 threonine dehydratase; Provisional
Probab=67.05 E-value=66 Score=35.25 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+.+|.|+++- .|..+.-..+...-..|++.++.. ....++++...++.++.. ++
T Consensus 85 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~~-~~-- 144 (403)
T PRK07334 85 GVAYHAQRLGIPATIV-----------MPRFTPTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEEG-LT-- 144 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhcC-CE--
Confidence 4567899999999986 343333344556677899998653 245567666555543321 11
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC-CcEEEEccCCchHHHHHhc----cCCCCcEEEEcCch
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE-VDALFVYTKTGHMASLLSR----CRPDCPIFAFTSTT 522 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~-a~aIvv~T~sG~tA~~lSr----~RP~~PIiavT~~~ 522 (584)
...+... + ...+....-+.|+.++++ .+.||+..-+|.|+.-+++ ++|.+.|+++-+..
T Consensus 145 -------~~~~~~~--~-~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~ 208 (403)
T PRK07334 145 -------FVHPYDD--P-AVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTEL 208 (403)
T ss_pred -------ecCCCCC--H-HHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1111111 1 122334456677777764 6899999999998766665 48999999999864
No 214
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=66.98 E-value=99 Score=31.94 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=42.5
Q ss_pred cCCCeEEehhhhHhhhcCCCC-ChhhH-HHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 382 LNKPVIVASQLLESMIEYPTP-TRAEV-ADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 382 ~gKPvivATqmLeSMi~~p~P-TrAEv-~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
..+||..+- .... |..+. ..+..++..|++++..+........|.+.++.|..++++-
T Consensus 195 ~~ipV~a~G--------Gi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~~ 254 (267)
T PRK07226 195 CPVPVVIAG--------GPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHEG 254 (267)
T ss_pred CCCCEEEEe--------CCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhCC
Confidence 368987652 1222 33333 4456778999999999999999999999999998887543
No 215
>PRK14057 epimerase; Provisional
Probab=66.83 E-value=1.2e+02 Score=31.62 Aligned_cols=139 Identities=13% Similarity=0.146 Sum_probs=82.2
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcC-------CCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSR-------DSDIAVIAKIESIDSLKNLEEIILASDGAMVARGD 358 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~-------~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGD 358 (584)
...++.-.+.|+|+|.+-+ +...++.+.-+.+++.+. +-...|.-+-+| -++.++.++...|.|+|
T Consensus 88 ~~~i~~~~~aGad~It~H~-Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLv---- 160 (254)
T PRK14057 88 WTAAQACVKAGAHCITLQA-EGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQL---- 160 (254)
T ss_pred HHHHHHHHHhCCCEEEEee-ccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEE----
Confidence 3455666789999888764 655667666677743221 013567777787 57779999999999888
Q ss_pred ccccCCC---CChHHHHHHHHHHHH---HcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCC-C-
Q 007936 359 LGAQIPL---EQVPSAQQKIVQLCR---QLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAM-G- 430 (584)
Q Consensus 359 Lg~ei~~---e~V~~~Qk~II~~c~---~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~-G- 430 (584)
++++-|+ .-.+..-++|-+..+ +.|-.+.+. +... =+ ..-+...+..|+|.+++. |++ +
T Consensus 161 MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGG-I~---~~ti~~l~~aGad~~V~G--SalF~~ 227 (254)
T PRK14057 161 LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV-------IDGS-LT---QDQLPSLIAQGIDRVVSG--SALFRD 227 (254)
T ss_pred EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEE-------EECC-CC---HHHHHHHHHCCCCEEEEC--hHhhCC
Confidence 4444444 234444455544332 334333221 1111 11 123456678899988875 444 2
Q ss_pred CChHHHHHHHHHHH
Q 007936 431 QFPDKALTVLRSVS 444 (584)
Q Consensus 431 ~yPveaV~~m~~I~ 444 (584)
..+.++++.|+.+.
T Consensus 228 ~d~~~~i~~l~~~~ 241 (254)
T PRK14057 228 DRLVENTRSWRAMF 241 (254)
T ss_pred CCHHHHHHHHHHHH
Confidence 35677777776553
No 216
>PLN03034 phosphoglycerate kinase; Provisional
Probab=66.54 E-value=29 Score=39.32 Aligned_cols=312 Identities=15% Similarity=0.164 Sum_probs=163.1
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHH----HHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEeecC
Q 007936 106 RTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTRE----WHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLS 181 (584)
Q Consensus 106 ~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e----~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~ 181 (584)
.|+|-+++ .+|+.|++.|..|.= +||-.+. ....+-.-.+.+++.+|++|...=|.-||+++-
T Consensus 114 d~RI~a~l-------pTI~~L~~~gakvVl--~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~fv~d~~G~~~~~---- 180 (481)
T PLN03034 114 DTRIRAAI-------PTIKYLISNGAKVIL--SSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK---- 180 (481)
T ss_pred hHhHHHHH-------HHHHHHHHCCCeEEE--EEecCCCCCCCcccCHHHHHHHHHHHhCCCeEECCCCCCHHHHH----
Confidence 45555554 579999999998765 5875432 223444555667788899999888888887651
Q ss_pred CCCceEeeCCCEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeCCCce
Q 007936 182 GPPSARAEDGEIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRAN 261 (584)
Q Consensus 182 ~~~~i~l~~G~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~s~Kg 261 (584)
..-.+++|+.+.|-.--|.. .+. -|.++|.+.+...-.||++|.
T Consensus 181 --~i~~l~~GeVlLLENvRF~~--eE~---~nd~~fa~~LA~l~DiyVNDA----------------------------- 224 (481)
T PLN03034 181 --LVASLPEGGVLLLENVRFYK--EEE---KNEPEFAKKLASLADLYVNDA----------------------------- 224 (481)
T ss_pred --HHhcCCCCcEEEEeccCcCc--ccc---cCcHHHHHHHHhhCCEEEecc-----------------------------
Confidence 12357888888775443321 111 144678888776555899885
Q ss_pred eeeccCCc---ccCCccccC-CCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEE--EeecC
Q 007936 262 LTFWRDGS---LVRERNAML-PTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVI--AKIES 335 (584)
Q Consensus 262 vnf~~~~~---~lp~~~~~l-p~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~Ii--AKIEt 335 (584)
|..-|. .+-|...-+ |. ..-|- =.+++..+.+.+.... ..-+-|+ ||+.+
T Consensus 225 --FgtaHR~haS~vGi~~~l~ps-------~aG~L--------------mekEl~~L~k~~~~p~-rP~vaIlGGaKVsd 280 (481)
T PLN03034 225 --FGTAHRAHASTEGVTKFLKPS-------VAGFL--------------LQKELDYLVGAVSNPK-RPFAAIVGGSKVSS 280 (481)
T ss_pred --hhhhHhcccchhhhhhhcCcc-------hhhHH--------------HHHHHHHHHHHHcCCC-CceEEEEcCccHHh
Confidence 111010 010111001 00 00010 1235555556553111 1112233 57776
Q ss_pred HHHHhcHHHHHHhCCEEEEeCC-------cccccCCC----CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCCh
Q 007936 336 IDSLKNLEEIILASDGAMVARG-------DLGAQIPL----EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTR 404 (584)
Q Consensus 336 ~~av~NldeIl~~sDGImIaRG-------DLg~ei~~----e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTr 404 (584)
+-++ |+.+++.+|.+++|=| -+|.++|- ++....-++|++.+++.|+.+++=....-.=.......+
T Consensus 281 KI~v--i~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~ 358 (481)
T PLN03034 281 KIGV--IESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANS 358 (481)
T ss_pred HHHH--HHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCe
Confidence 6555 7788888999999854 35666654 245556679999999999887753222210000000011
Q ss_pred hhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHH
Q 007936 405 AEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKM 484 (584)
Q Consensus 405 AEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~ 484 (584)
. +.++ ..+-+ |...|. +|. ++++...+++.++...++.-.. +.++.+ ....-+.+++.+..++
T Consensus 359 ~-~~~~-~~Ip~--~~~~lD----IGp---~Ti~~~~~~i~~akTI~WNGPm-GvFE~~-----~Fa~GT~~l~~aia~~ 421 (481)
T PLN03034 359 K-IVPA-SAIPD--GWMGLD----IGP---DSVKTFNEALDTTQTVIWNGPM-GVFEFE-----KFAVGTEAVAKKLAEL 421 (481)
T ss_pred E-Eeeh-hcCCC--CCEEEe----cCH---HHHHHHHHHHhhCCEEEEECCc-ccccCC-----cchHHHHHHHHHHHHh
Confidence 1 1111 12222 334444 443 7888888888888765432100 011111 1113345555554443
Q ss_pred HhhcCCcEEEEccCCchHHHHHhccCCCC
Q 007936 485 ANNLEVDALFVYTKTGHMASLLSRCRPDC 513 (584)
Q Consensus 485 A~~l~a~aIvv~T~sG~tA~~lSr~RP~~ 513 (584)
. +.++. .+---|.|+..+.++-..-
T Consensus 422 ~-~~~a~---sIvGGGDt~aAi~~~g~~~ 446 (481)
T PLN03034 422 S-GKGVT---TIIGGGDSVAAVEKVGVAD 446 (481)
T ss_pred h-cCCCe---EEEcCcHHHHHHHHcCCcc
Confidence 2 22332 2223677777777665443
No 217
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=66.51 E-value=76 Score=33.32 Aligned_cols=135 Identities=14% Similarity=0.070 Sum_probs=73.5
Q ss_pred CCCEEEEcC-----------CCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-------CCEEEEe--
Q 007936 296 GVDFIAISF-----------VKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-------SDGAMVA-- 355 (584)
Q Consensus 296 gvD~I~lSf-----------V~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-------sDGImIa-- 355 (584)
++|+|-+.+ -++++.+.++.+.++.. .++.|++||=--....++.++++. +|||.+.
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~---~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt 195 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA---YSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNT 195 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh---cCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEcc
Confidence 578765533 23566666666666421 258999999321112234444442 3556531
Q ss_pred ----------CCc--cc--ccC-CC---CChHHHHHHHHHHHHHcC--CCeEEehhhhHhhhcCCCCChhhHHHHHHHHH
Q 007936 356 ----------RGD--LG--AQI-PL---EQVPSAQQKIVQLCRQLN--KPVIVASQLLESMIEYPTPTRAEVADVSEAVR 415 (584)
Q Consensus 356 ----------RGD--Lg--~ei-~~---e~V~~~Qk~II~~c~~~g--KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~ 415 (584)
|.- |. ... |+ .--+...+.+-+..++.+ .|+|-..-+. --.|+..+++
T Consensus 196 ~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~------------s~~da~e~l~ 263 (294)
T cd04741 196 LGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVL------------DGRGAFRMRL 263 (294)
T ss_pred CCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCC------------CHHHHHHHHH
Confidence 221 10 011 11 124455555555555563 7888765433 3467888899
Q ss_pred cccceEeecCCCCCCCChHHHHHHHHHHHHHHhhh
Q 007936 416 QRADALMLSGESAMGQFPDKALTVLRSVSLRIEKW 450 (584)
Q Consensus 416 ~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~ 450 (584)
.|||++|+..-.- .+-| ...++|+++.+.|
T Consensus 264 aGA~~Vqv~ta~~-~~gp----~~~~~i~~~L~~~ 293 (294)
T cd04741 264 AGASAVQVGTALG-KEGP----KVFARIEKELEDI 293 (294)
T ss_pred cCCCceeEchhhh-hcCc----hHHHHHHHHHHhh
Confidence 9999999984332 2234 3456666666654
No 218
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=65.80 E-value=39 Score=34.06 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=88.0
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecC-----HHH-----HhcHHHHHHh-CCEEEE
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIES-----IDS-----LKNLEEIILA-SDGAMV 354 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt-----~~a-----v~NldeIl~~-sDGImI 354 (584)
.+.++.+++.+++.|+++. .-+..++..+ ...+..+.++..... ..- +...++.++. +|+|-+
T Consensus 22 ~~~~~~a~~~~~~av~v~p----~~~~~~~~~~--~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~ 95 (236)
T PF01791_consen 22 KKLCREAIEYGFDAVCVTP----GYVKPAAELL--AGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDV 95 (236)
T ss_dssp HHHHHHHHHHTSSEEEEEG----GGHHHHHHHS--TTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHhCCCEEEECH----HHHHHHHHHh--hccccccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeee
Confidence 4455778899999999874 4455666655 222335666766653 222 4556666665 775543
Q ss_pred --eCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhh---------HHHHHH-HHHcccceEe
Q 007936 355 --ARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAE---------VADVSE-AVRQRADALM 422 (584)
Q Consensus 355 --aRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAE---------v~Dv~n-av~~G~D~im 422 (584)
-.|-++-+- .+.+..--+++++.|+..|.|+|+- +.|+..| +...+. +...|+|.+=
T Consensus 96 vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE----------~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vK 164 (236)
T PF01791_consen 96 VINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILE----------PYLRGEEVADEKKPDLIARAARIAAELGADFVK 164 (236)
T ss_dssp EEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEE----------ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEE
T ss_pred ecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEE----------EecCchhhcccccHHHHHHHHHHHHHhCCCEEE
Confidence 222222111 2456666678999999999999974 3455555 333333 6789999987
Q ss_pred ecCCCCCCCChHHHHHHHHHHHHHHh
Q 007936 423 LSGESAMGQFPDKALTVLRSVSLRIE 448 (584)
Q Consensus 423 Ls~ETa~G~yPveaV~~m~~I~~~aE 448 (584)
.+-=.. ...-.+.++.|++++..+.
T Consensus 165 t~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 165 TSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp EE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred ecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 763333 4556788888888876543
No 219
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=65.78 E-value=21 Score=35.63 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=72.1
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCC
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPL 365 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~ 365 (584)
...++.-.+.|+|+|.+.+ ++.+++.++.++++ +.|-...|..+-+| .++.+++++...|.|++ ++++-|.
T Consensus 70 ~~~i~~~~~~g~~~i~~H~-E~~~~~~~~i~~ik--~~g~k~GialnP~T--~~~~~~~~l~~vD~Vlv----MsV~PG~ 140 (201)
T PF00834_consen 70 ERYIEEFAEAGADYITFHA-EATEDPKETIKYIK--EAGIKAGIALNPET--PVEELEPYLDQVDMVLV----MSVEPGF 140 (201)
T ss_dssp GGHHHHHHHHT-SEEEEEG-GGTTTHHHHHHHHH--HTTSEEEEEE-TTS---GGGGTTTGCCSSEEEE----ESS-TTT
T ss_pred HHHHHHHHhcCCCEEEEcc-cchhCHHHHHHHHH--HhCCCEEEEEECCC--CchHHHHHhhhcCEEEE----EEecCCC
Confidence 4466777899999888775 57778888888884 45666777777777 67889999999999988 4455444
Q ss_pred ------CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCC-CCChhhHHHHHHHHHcccceEeec
Q 007936 366 ------EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYP-TPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 366 ------e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p-~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+.+..-.+++-+...+.|..+.+. +... .+. -+......|+|.+++.
T Consensus 141 ~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~-------vDGGI~~~-----~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 141 GGQKFIPEVLEKIRELRKLIPENGLDFEIE-------VDGGINEE-----NIKQLVEAGADIFVAG 194 (201)
T ss_dssp SSB--HGGHHHHHHHHHHHHHHHTCGSEEE-------EESSESTT-----THHHHHHHT--EEEES
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCceEEE-------EECCCCHH-----HHHHHHHcCCCEEEEC
Confidence 234444444444555555554442 1111 122 2355667899988764
No 220
>PRK06815 hypothetical protein; Provisional
Probab=65.66 E-value=54 Score=34.64 Aligned_cols=119 Identities=14% Similarity=0.178 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+.+|.|+.+- .|..+.-..+...-..|++.+...++ ..++.+...+++.+-. +
T Consensus 82 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~V~~~~~~------~~~~~~~a~~~~~~~~-~--- 140 (317)
T PRK06815 82 GVALAAKLAGIPVTVY-----------APEQASAIKLDAIRALGAEVRLYGGD------ALNAELAARRAAEQQG-K--- 140 (317)
T ss_pred HHHHHHHHhCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhcC-C---
Confidence 4667899999999886 23333334455566789998888653 3455544444432211 1
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhc-CCcEEEEccCCchHHHHHh----ccCCCCcEEEEcCch
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNL-EVDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTT 522 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l-~a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~ 522 (584)
+...+... + ...+.....+.|+.+++ ..++||+..-+|.+..-++ .+.|...|+++.+..
T Consensus 141 ------~~~~~~~~--~-~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~ 205 (317)
T PRK06815 141 ------VYISPYND--P-QVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPAN 205 (317)
T ss_pred ------EEecCCCC--h-hhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 11111111 1 11223344566777766 4799999999998775544 456999999999864
No 221
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=65.48 E-value=85 Score=33.27 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=72.4
Q ss_pred CceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhh---HhhhcCCC
Q 007936 326 DIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLL---ESMIEYPT 401 (584)
Q Consensus 326 ~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmL---eSMi~~p~ 401 (584)
.+++...+... .++.+.+.++. .+-||+.--+ +|+++....-+++.+.|+++|.++=..-.-+ |-++....
T Consensus 77 ~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S~----l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s 151 (293)
T PRK07315 77 TVPVAIHLDHG-HYEDALECIEVGYTSIMFDGSH----LPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG 151 (293)
T ss_pred CCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCCC----CCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc
Confidence 56899999887 66666666655 7899997554 4788888999999999999999984332222 12211111
Q ss_pred CChhhHHHHHHHHHcccceEeecCCCCCCCChH
Q 007936 402 PTRAEVADVSEAVRQRADALMLSGESAMGQFPD 434 (584)
Q Consensus 402 PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPv 434 (584)
. .....++..|+..|+|++-++-=|.-|.||-
T Consensus 152 ~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t 183 (293)
T PRK07315 152 E-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPE 183 (293)
T ss_pred C-CCCHHHHHHHHHcCCCEEeeccccccccCCC
Confidence 1 1233445667789999999998899999964
No 222
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=65.45 E-value=92 Score=31.93 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=70.5
Q ss_pred CccCHhhhHHhHhcCCCEEEEc----------------CCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHH
Q 007936 282 SPKDWLDIDFGITEGVDFIAIS----------------FVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEI 345 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lS----------------fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeI 345 (584)
+..+...+..-+..++|+|=+. ..++++-+.++.+.++ . ..++|.+||=--.--.+..++
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~--~--~~~PVsvKiR~~~~~~~~~~~ 153 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK--E--LNKPIFVKIRGNCIPLDELID 153 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH--c--CCCcEEEEeCCCCCcchHHHH
Confidence 4455555555566788887765 3457777777777774 2 257899999431111122244
Q ss_pred HHh-----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHc-C-CCeEEehhhhHhhhcCCCCChhhHHHHHHHHHccc
Q 007936 346 ILA-----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQL-N-KPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRA 418 (584)
Q Consensus 346 l~~-----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~-g-KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~ 418 (584)
++. +|+|-|.-+. ..-+.+.-..|+..+++ + +|+|-- +..-|.. |+...+..|+
T Consensus 154 a~~l~~aGad~i~Vd~~~-------~g~~~a~~~~I~~i~~~~~~ipIIgN---------GgI~s~e---da~e~l~~GA 214 (231)
T TIGR00736 154 ALNLVDDGFDGIHVDAMY-------PGKPYADMDLLKILSEEFNDKIIIGN---------NSIDDIE---SAKEMLKAGA 214 (231)
T ss_pred HHHHHHcCCCEEEEeeCC-------CCCchhhHHHHHHHHHhcCCCcEEEE---------CCcCCHH---HHHHHHHhCC
Confidence 332 7999884221 11122444455555544 4 887753 4455554 5555556799
Q ss_pred ceEeecC
Q 007936 419 DALMLSG 425 (584)
Q Consensus 419 D~imLs~ 425 (584)
|+||+..
T Consensus 215 d~VmvgR 221 (231)
T TIGR00736 215 DFVSVAR 221 (231)
T ss_pred CeEEEcH
Confidence 9999863
No 223
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=65.36 E-value=1.1e+02 Score=34.45 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=71.9
Q ss_pred CHhhhHHhHhcCCCEEEEcCC-C-CHHHHHHHHHH-HHhh---cCCCCceEEEeecCHHHHhc---------HHHHHHh-
Q 007936 285 DWLDIDFGITEGVDFIAISFV-K-SAEVINHLKSY-IAAR---SRDSDIAVIAKIESIDSLKN---------LEEIILA- 348 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV-~-saedV~~lr~~-l~~~---~~~~~i~IiAKIEt~~av~N---------ldeIl~~- 348 (584)
+.+.++..+++|+..|..|.- . ++..+ ..+.. +... .......|++|+-+++-... ++.+.+.
T Consensus 89 e~~~v~l~l~~~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G 167 (444)
T TIGR02814 89 EWGLVDLLLRHGVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEG 167 (444)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcC
Confidence 456678889999999888732 2 33221 22210 0000 00112489999977765543 1222211
Q ss_pred ---------------CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHc--------CCCeEEehhhhHhhhcCCCCChh
Q 007936 349 ---------------SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQL--------NKPVIVASQLLESMIEYPTPTRA 405 (584)
Q Consensus 349 ---------------sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~--------gKPvivATqmLeSMi~~p~PTrA 405 (584)
+|.|.+. .|=|-+.+--.....-..|++.+.+. ..|||.|--+- |
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~---------t-- 235 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIG---------T-- 235 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCC---------C--
Confidence 5888887 78777765433334444554433332 45798885433 2
Q ss_pred hHHHHHHHHHcccceEee
Q 007936 406 EVADVSEAVRQRADALML 423 (584)
Q Consensus 406 Ev~Dv~nav~~G~D~imL 423 (584)
-.+++-|...|+|++.+
T Consensus 236 -~~~vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 236 -PEAAAAAFMLGADFIVT 252 (444)
T ss_pred -HHHHHHHHHcCCcEEEe
Confidence 34678899999999987
No 224
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=65.31 E-value=1.4e+02 Score=31.19 Aligned_cols=85 Identities=21% Similarity=0.210 Sum_probs=54.7
Q ss_pred CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCC
Q 007936 349 SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESA 428 (584)
Q Consensus 349 sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa 428 (584)
+|.||.--...|-..|+.. +...+.|.+. .+.|||+.- ..=| -+|++.++..|+|++++..=-+
T Consensus 145 ~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~---~~vpVI~eg---------GI~t---peda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 145 CAAVMPLGSPIGSGQGLLN-PYNLRIIIER---ADVPVIVDA---------GIGT---PSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred CCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---CCCcEEEeC---------CCCC---HHHHHHHHHcCCCEEEEChHhc
Confidence 3455441122333345544 5555544443 478998752 2222 2577999999999999998888
Q ss_pred CCCChHHHHHHHHHHHHHHhh
Q 007936 429 MGQFPDKALTVLRSVSLRIEK 449 (584)
Q Consensus 429 ~G~yPveaV~~m~~I~~~aE~ 449 (584)
.++.|..-.+.+..-++.-..
T Consensus 209 ~a~dP~~ma~af~~Av~aGr~ 229 (248)
T cd04728 209 KAKDPVAMARAFKLAVEAGRL 229 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 888999888888777655543
No 225
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=65.15 E-value=1.2e+02 Score=30.32 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=66.8
Q ss_pred cCHhhhHHhHhcCCCEEEEcC--CCCHHHHHHHHHHHHhhcCCCCceEEEeecCH------HHH-----hcHHHHHHh--
Q 007936 284 KDWLDIDFGITEGVDFIAISF--VKSAEVINHLKSYIAARSRDSDIAVIAKIESI------DSL-----KNLEEIILA-- 348 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSf--V~saedV~~lr~~l~~~~~~~~i~IiAKIEt~------~av-----~NldeIl~~-- 348 (584)
.+.+|++.+++.|+|.|.+.- .++++-+.++.+.+ +.+ .|+.-|... .|. .+..+.++.
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~-----g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~ 159 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEF-----GSE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFE 159 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHh-----CCC-cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHH
Confidence 467888999999999988864 33444555555544 111 233333211 010 133333322
Q ss_pred ---CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC
Q 007936 349 ---SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG 425 (584)
Q Consensus 349 ---sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ 425 (584)
+|.|.+---+-.-...-..+ +.+-+.|+....|++.+.- .-+.. |+......|+|++++..
T Consensus 160 ~~G~~~i~~~~~~~~g~~~g~~~----~~i~~i~~~~~iPvia~GG---------I~~~~---di~~~~~~Ga~gv~vgs 223 (241)
T PRK13585 160 ELGAGSILFTNVDVEGLLEGVNT----EPVKELVDSVDIPVIASGG---------VTTLD---DLRALKEAGAAGVVVGS 223 (241)
T ss_pred HcCCCEEEEEeecCCCCcCCCCH----HHHHHHHHhCCCCEEEeCC---------CCCHH---HHHHHHHcCCCEEEEEH
Confidence 57777632111111111122 2234445566899998743 33344 44445667999999975
Q ss_pred CCCCCCCh
Q 007936 426 ESAMGQFP 433 (584)
Q Consensus 426 ETa~G~yP 433 (584)
---.|.++
T Consensus 224 a~~~~~~~ 231 (241)
T PRK13585 224 ALYKGKFT 231 (241)
T ss_pred HHhcCCcC
Confidence 54445444
No 226
>PRK08005 epimerase; Validated
Probab=65.04 E-value=1.2e+02 Score=30.78 Aligned_cols=131 Identities=12% Similarity=0.055 Sum_probs=80.1
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCC
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPL 365 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~ 365 (584)
...|+.-.+.|+|+|.+-+ ++..++.++-+.++ +.|....|--+-+| -++.++.++...|.|+| ++++-|.
T Consensus 71 ~~~i~~~~~~gad~It~H~-Ea~~~~~~~l~~Ik--~~G~k~GlAlnP~T--p~~~i~~~l~~vD~Vlv----MsV~PGf 141 (210)
T PRK08005 71 QRWLPWLAAIRPGWIFIHA-ESVQNPSEILADIR--AIGAKAGLALNPAT--PLLPYRYLALQLDALMI----MTSEPDG 141 (210)
T ss_pred HHHHHHHHHhCCCEEEEcc-cCccCHHHHHHHHH--HcCCcEEEEECCCC--CHHHHHHHHHhcCEEEE----EEecCCC
Confidence 4456666889999888865 55566777777774 45666788888887 56678899999998888 4444444
Q ss_pred ---CChHHHHHHHHHHHHHcCC-CeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCC--CCChHHHHHH
Q 007936 366 ---EQVPSAQQKIVQLCRQLNK-PVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAM--GQFPDKALTV 439 (584)
Q Consensus 366 ---e~V~~~Qk~II~~c~~~gK-PvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~--G~yPveaV~~ 439 (584)
.-++..-++|-+..+.... .+-+- .. =+ ..-+...+..|+|.+++. |++ ..-|.++++.
T Consensus 142 ~GQ~f~~~~~~KI~~l~~~~~~~~I~VD---------GG-I~---~~~i~~l~~aGad~~V~G--saiF~~~d~~~~~~~ 206 (210)
T PRK08005 142 RGQQFIAAMCEKVSQSREHFPAAECWAD---------GG-IT---LRAARLLAAAGAQHLVIG--RALFTTANYDVTLSQ 206 (210)
T ss_pred ccceecHHHHHHHHHHHHhcccCCEEEE---------CC-CC---HHHHHHHHHCCCCEEEEC--hHhhCCCCHHHHHHH
Confidence 3455555555554332221 22221 11 11 123345677899988886 333 2345565554
Q ss_pred H
Q 007936 440 L 440 (584)
Q Consensus 440 m 440 (584)
|
T Consensus 207 ~ 207 (210)
T PRK08005 207 F 207 (210)
T ss_pred H
Confidence 4
No 227
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=64.86 E-value=41 Score=37.48 Aligned_cols=126 Identities=24% Similarity=0.313 Sum_probs=78.8
Q ss_pred CccCHhhhHHhHhcCCCEEEE--cCCCCHHHHHHHHHHHHhhcCCCCceEEEe-ecCHHHHhcHHHHHHhCCEEEEeCCc
Q 007936 282 SPKDWLDIDFGITEGVDFIAI--SFVKSAEVINHLKSYIAARSRDSDIAVIAK-IESIDSLKNLEEIILASDGAMVARGD 358 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~l--SfV~saedV~~lr~~l~~~~~~~~i~IiAK-IEt~~av~NldeIl~~sDGImIaRGD 358 (584)
.+.|+..++.-...|+|+|++ |-=+|--++..+ +++++. =.+..||+- .=|.+=.+|| |.+-+||+-||=|-
T Consensus 249 re~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemi-k~iK~~--yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGs 323 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMI-KYIKET--YPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGS 323 (503)
T ss_pred ccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHH-HHHHhh--CCCceeeccceeeHHHHHHH--HHccCceeEecccc
Confidence 467788888889999999988 344455555554 345322 234555542 2233333333 44449999998765
Q ss_pred ccccCCCCC--h----HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 359 LGAQIPLEQ--V----PSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 359 Lg~ei~~e~--V----~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
=++-+-.|. + ..+--++.+.+++.|.|||-- ---.-+.+++.|+..|++.+|+.
T Consensus 324 GSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviAD------------GGiq~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 324 GSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIAD------------GGIQNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred CceeeeceeeeccCCcccchhhHHHHHHhcCCceeec------------CCcCccchhHhhhhcCchhheec
Confidence 444333321 1 122235778889999999943 22234688999999999999874
No 228
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=64.82 E-value=44 Score=33.60 Aligned_cols=102 Identities=15% Similarity=0.219 Sum_probs=61.1
Q ss_pred HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCCh
Q 007936 290 DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQV 368 (584)
Q Consensus 290 ~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V 368 (584)
+..++.|++.|-+.| ++++-.+.++++.+ +.. ++.| =.=|.--.+..+..+++ ++-| |.|+
T Consensus 27 ~al~~~Gi~~iEit~-~t~~a~~~i~~l~~--~~~-~~~v--GAGTVl~~~~a~~a~~aGA~Fi-vsP~----------- 88 (204)
T TIGR01182 27 KALIEGGLRVLEVTL-RTPVALDAIRLLRK--EVP-DALI--GAGTVLNPEQLRQAVDAGAQFI-VSPG----------- 88 (204)
T ss_pred HHHHHcCCCEEEEeC-CCccHHHHHHHHHH--HCC-CCEE--EEEeCCCHHHHHHHHHcCCCEE-ECCC-----------
Confidence 344667788888877 66666665555542 222 2222 22233333334444444 4444 3322
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC
Q 007936 369 PSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG 425 (584)
Q Consensus 369 ~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ 425 (584)
....+++.|+++|.|++ |--.--+++..|...|+|.+=+=-
T Consensus 89 --~~~~v~~~~~~~~i~~i--------------PG~~TptEi~~A~~~Ga~~vKlFP 129 (204)
T TIGR01182 89 --LTPELAKHAQDHGIPII--------------PGVATPSEIMLALELGITALKLFP 129 (204)
T ss_pred --CCHHHHHHHHHcCCcEE--------------CCCCCHHHHHHHHHCCCCEEEECC
Confidence 24589999999999988 322334667999999999988743
No 229
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.79 E-value=36 Score=34.33 Aligned_cols=40 Identities=8% Similarity=0.134 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 370 SAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 370 ~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
..-..+++.|++++.|.+=- .-| .+++..|...|+|.+=|
T Consensus 95 ~~~~~vi~~a~~~~i~~iPG-----------~~T---ptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 95 GLTPPLLKAAQEGPIPLIPG-----------VST---PSELMLGMELGLRTFKF 134 (212)
T ss_pred CCCHHHHHHHHHcCCCEeCC-----------CCC---HHHHHHHHHCCCCEEEE
Confidence 34458999999999998811 122 23468899999999988
No 230
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=64.63 E-value=43 Score=34.58 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=60.9
Q ss_pred HhhhHHhHhcCCCEEEEcC------CCCHHHHHHHHHHHHhhcCCCCceEEEeecC---HHHHhcHHHHHHh-CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAISF------VKSAEVINHLKSYIAARSRDSDIAVIAKIES---IDSLKNLEEIILA-SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSf------V~saedV~~lr~~l~~~~~~~~i~IiAKIEt---~~av~NldeIl~~-sDGImIa 355 (584)
.+.+++.++.|+|+|++.= --|.++-+++.+...+ ..+.++.|++-+-. .++++-.....+. +|+||+.
T Consensus 24 ~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~-~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVE-AVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVV 102 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHH-HhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 4556888999999998762 2344555555544432 23456888988853 4555555555544 7999998
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+-...- .+-+.+...-+.|++ +.+.|+++-
T Consensus 103 ~P~~~~-~~~~~l~~~~~~ia~---~~~~pi~lY 132 (284)
T cd00950 103 TPYYNK-PSQEGLYAHFKAIAE---ATDLPVILY 132 (284)
T ss_pred ccccCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 765421 122445555555555 458999875
No 231
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=64.40 E-value=13 Score=40.14 Aligned_cols=49 Identities=16% Similarity=0.360 Sum_probs=42.6
Q ss_pred eEEEecCCCCCCHHHHHHHHHh--cCCEEEEeCCCCCHHHHHHHHHHHHHH
Q 007936 108 KLVCTIGPATCGFEQLEALAVG--GMNVARINMCHGTREWHRRVIERVRRL 156 (584)
Q Consensus 108 KIi~TiGPa~~~~e~l~~li~~--Gm~v~RiN~sHg~~e~~~~~i~~ir~~ 156 (584)
.+..++|-...+.|.+++|+++ |+|+.=|+.+||..+...++|+.||+.
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~ 148 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREA 148 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHh
Confidence 4555888887889999999995 999999999999999888888888873
No 232
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=64.19 E-value=96 Score=33.04 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=65.9
Q ss_pred CCCccCHhhh--------HHhHhcCCCEEEEcC-------------CCCH----------------HHHHHHHHHHHhhc
Q 007936 280 TISPKDWLDI--------DFGITEGVDFIAISF-------------VKSA----------------EVINHLKSYIAARS 322 (584)
Q Consensus 280 ~lt~kD~~dI--------~~al~~gvD~I~lSf-------------V~sa----------------edV~~lr~~l~~~~ 322 (584)
.+|+.|++.+ +++.+.|+|+|=+.. .+.. +-++.+|+.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~----- 217 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAV----- 217 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHH-----
Confidence 3677776665 567789999996642 2232 333334333
Q ss_pred CCCCceEEEeecC----------HHHHhcHHHHHHh-CCEEEEeCCccccc--CCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 323 RDSDIAVIAKIES----------IDSLKNLEEIILA-SDGAMVARGDLGAQ--IPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 323 ~~~~i~IiAKIEt----------~~av~NldeIl~~-sDGImIaRGDLg~e--i~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
.+.+..|..||=- .++++-+..+-+. .|.|=|..|..... .+..... .....-+.++..++||+..
T Consensus 218 vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~-~~~~~~~ir~~~~iPVi~~ 296 (336)
T cd02932 218 WPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGY-QVPFAERIRQEAGIPVIAV 296 (336)
T ss_pred cCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccc-cHHHHHHHHhhCCCCEEEe
Confidence 3566788888641 1222222222222 57777766544322 1221110 0112222344558998875
Q ss_pred hhhhHhhhcCCCCChhhHHHHHHHHHcc-cceEeec
Q 007936 390 SQLLESMIEYPTPTRAEVADVSEAVRQR-ADALMLS 424 (584)
Q Consensus 390 TqmLeSMi~~p~PTrAEv~Dv~nav~~G-~D~imLs 424 (584)
-. .-|.+ |...++..| +|+|++.
T Consensus 297 G~---------i~t~~---~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 297 GL---------ITDPE---QAEAILESGRADLVALG 320 (336)
T ss_pred CC---------CCCHH---HHHHHHHcCCCCeehhh
Confidence 32 22333 445567777 9999886
No 233
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=64.12 E-value=1.4e+02 Score=31.64 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhc-----CCcEEEEccCCchHHHHHhcc----CCCCcEEEEcCch
Q 007936 476 EICNSAAKMANNL-----EVDALFVYTKTGHMASLLSRC----RPDCPIFAFTSTT 522 (584)
Q Consensus 476 ~ia~sav~~A~~l-----~a~aIvv~T~sG~tA~~lSr~----RP~~PIiavT~~~ 522 (584)
.....+.++.+++ ..+.||+.+-+|.|+--++++ .|.+.|+++.+..
T Consensus 166 g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 166 GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 3344445776665 478999999999999776654 5999999999965
No 234
>PRK00208 thiG thiazole synthase; Reviewed
Probab=63.97 E-value=1.5e+02 Score=30.95 Aligned_cols=71 Identities=23% Similarity=0.231 Sum_probs=49.5
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHH
Q 007936 363 IPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRS 442 (584)
Q Consensus 363 i~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~ 442 (584)
.|+.. +...+.|.+. .+.|||+.- ..=| -+|++.++..|+|++++.+=-+..+.|..-.+.+..
T Consensus 159 ~gi~~-~~~i~~i~e~---~~vpVIvea---------GI~t---peda~~AmelGAdgVlV~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 159 LGLLN-PYNLRIIIEQ---ADVPVIVDA---------GIGT---PSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred CCCCC-HHHHHHHHHh---cCCeEEEeC---------CCCC---HHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 34444 5554555443 478999752 2222 257899999999999998888888899988888777
Q ss_pred HHHHHhh
Q 007936 443 VSLRIEK 449 (584)
Q Consensus 443 I~~~aE~ 449 (584)
-++.-..
T Consensus 223 Av~aGr~ 229 (250)
T PRK00208 223 AVEAGRL 229 (250)
T ss_pred HHHHHHH
Confidence 6655544
No 235
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=63.87 E-value=14 Score=39.87 Aligned_cols=49 Identities=12% Similarity=0.279 Sum_probs=43.2
Q ss_pred eEEEecCCCCCCHHHHHHHHHhc--CCEEEEeCCCCCHHHHHHHHHHHHHH
Q 007936 108 KLVCTIGPATCGFEQLEALAVGG--MNVARINMCHGTREWHRRVIERVRRL 156 (584)
Q Consensus 108 KIi~TiGPa~~~~e~l~~li~~G--m~v~RiN~sHg~~e~~~~~i~~ir~~ 156 (584)
.+..++|-...+.|.++.|+++| +|+.=|+.+||..+...+.|++||+.
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~ 147 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA 147 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh
Confidence 35558898888899999999996 99999999999999999999999873
No 236
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=63.70 E-value=69 Score=35.74 Aligned_cols=214 Identities=17% Similarity=0.195 Sum_probs=116.6
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhcCC-EEEEeCCCCCH-----HHHHHHHHHHHHHHHHhCCceEEEeecCCCeEEEee
Q 007936 106 RTKLVCTIGPATCGFEQLEALAVGGMN-VARINMCHGTR-----EWHRRVIERVRRLNEEKGFAVAIMMDTEGSEIHMGD 179 (584)
Q Consensus 106 ~tKIi~TiGPa~~~~e~l~~li~~Gm~-v~RiN~sHg~~-----e~~~~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~ 179 (584)
.|+|-+++ .+|+.|++.|.. |.= +||-.+ +....+-.-...+++.++++|...-|.-|++.+-
T Consensus 38 d~RI~~~l-------pTI~~L~~~gak~vvl--~SHlGRP~g~~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~~~~~-- 106 (417)
T PTZ00005 38 ATRIKATL-------PTIKYLLEQGAKSVVL--MSHLGRPDGRRVEKYSLKPVVPKLEELLGKKVTFLNDCVGPEVEE-- 106 (417)
T ss_pred hHhHHHHH-------HHHHHHHHCCCCEEEE--EecCCCCCCCcCcccCHHHHHHHHHHHHCCCeEECCCCCCHHHHH--
Confidence 45666654 589999999986 543 788322 2223344445667778899998888999987541
Q ss_pred cCCCCceEeeCCCEEEEeecccCCCCCCCE-------EEe-ccc----chhcccCCCCEEEEeCCeeEEEEEEEeCCeEE
Q 007936 180 LSGPPSARAEDGEIWTFTVRAFDSPRPERT-------ITV-NYD----GFAEDVKVGDELLVDGGMVRFEVIEKIGPDVK 247 (584)
Q Consensus 180 ~~~~~~i~l~~G~~v~~t~~~~~~~~~~~~-------i~v-~~~----~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~ 247 (584)
..-.|++|+.+.|-.--|... +.. ... |.+ .|.+.+..--.||++|.--
T Consensus 107 ----~i~~l~~GeVlLLENvRF~~~--Ee~~~~~~~~~~~~~d~~~~~~fa~~LA~l~DiyVNDAFg------------- 167 (417)
T PTZ00005 107 ----ACANAKNGSVILLENLRFHIE--EEGKGVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDAFG------------- 167 (417)
T ss_pred ----HHHcCCCCCEEEEeccccccc--cccccccccccccCCCHHHHHHHHHHHHhhCCEEEecchh-------------
Confidence 123578888877754322110 111 001 112 2666665544488888400
Q ss_pred EEEEcCceeCCCceeeeccCCcccCCccccCCCCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCc
Q 007936 248 CRCTDPGLLLPRANLTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDI 327 (584)
Q Consensus 248 c~v~~~G~l~s~Kgvnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i 327 (584)
.. .|.+-.+-+ +|.. ....-+.+ .+++..+.+.+... ...-+
T Consensus 168 --------------~a-HR~haS~~g----i~~~----~s~aG~lm--------------ekEl~~L~~~~~~p-~rP~v 209 (417)
T PTZ00005 168 --------------TA-HRAHSSMVG----VDLP----VKVAGFLM--------------KKELDYFSKALENP-QRPFL 209 (417)
T ss_pred --------------hh-hhhcccccc----cCCc----cchhhHHH--------------HHHHHHHHHHhcCC-CCceE
Confidence 00 111111111 1100 00011111 24666666666311 11112
Q ss_pred eEE--EeecCHHHHhcHHHHHHhCCEEEEeCC--------cccccCCC----CChHHHHHHHHHHHHHcCCCeEEe
Q 007936 328 AVI--AKIESIDSLKNLEEIILASDGAMVARG--------DLGAQIPL----EQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 328 ~Ii--AKIEt~~av~NldeIl~~sDGImIaRG--------DLg~ei~~----e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
.|+ ||+.++-++ |+.++..+|.|++|=| .-|.++|- ++....-++|++.|...|+++++-
T Consensus 210 aIlGGaKvsdKi~v--l~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lP 283 (417)
T PTZ00005 210 AILGGAKVADKIQL--IKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLP 283 (417)
T ss_pred EEEcCccHHhHHHH--HHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCC
Confidence 233 577655444 7777888999998743 23444543 345555679999999999988853
No 237
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.37 E-value=1.3e+02 Score=32.14 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=67.3
Q ss_pred CCCccCHhhh--------HHhHhcCCCEEEE-------------cCCCC------------HHHHHHHHHHHHhhcCCCC
Q 007936 280 TISPKDWLDI--------DFGITEGVDFIAI-------------SFVKS------------AEVINHLKSYIAARSRDSD 326 (584)
Q Consensus 280 ~lt~kD~~dI--------~~al~~gvD~I~l-------------SfV~s------------aedV~~lr~~l~~~~~~~~ 326 (584)
.+|..|++.+ +++.+.|+|+|=+ |..+. ..-+.++.+.++ +..+.+
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR-~avG~d 216 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIR-AAVGPG 216 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHH-HHcCCC
Confidence 3566666555 5677899999966 33332 122223333332 233667
Q ss_pred ceEEEeec---------CH-HHHhcHHHHHHh-CCEEEEeCCcccccC-------CCCChHHHHHHHHHHHH-HcCCCeE
Q 007936 327 IAVIAKIE---------SI-DSLKNLEEIILA-SDGAMVARGDLGAQI-------PLEQVPSAQQKIVQLCR-QLNKPVI 387 (584)
Q Consensus 327 i~IiAKIE---------t~-~av~NldeIl~~-sDGImIaRGDLg~ei-------~~e~V~~~Qk~II~~c~-~~gKPvi 387 (584)
..|..||= +. ++++=++.+.+. .|.|-|.-|-..-.. +...-+..+....+..+ ..+.||+
T Consensus 217 ~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi 296 (338)
T cd04733 217 FPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLM 296 (338)
T ss_pred CeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEE
Confidence 88888883 21 222222333332 577766555321101 00000111223333333 3589999
Q ss_pred EehhhhHhhhcCCCCChhhHHHHHHHHHcc-cceEeec
Q 007936 388 VASQLLESMIEYPTPTRAEVADVSEAVRQR-ADALMLS 424 (584)
Q Consensus 388 vATqmLeSMi~~p~PTrAEv~Dv~nav~~G-~D~imLs 424 (584)
....+ - ...+...++..| +|.|++.
T Consensus 297 ~~G~i---------~---t~~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 297 VTGGF---------R---TRAAMEQALASGAVDGIGLA 322 (338)
T ss_pred EeCCC---------C---CHHHHHHHHHcCCCCeeeeC
Confidence 87432 1 234556778876 8999986
No 238
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=63.35 E-value=1.9e+02 Score=33.17 Aligned_cols=166 Identities=16% Similarity=0.221 Sum_probs=92.9
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHh-HhcCCCEEEEcCC-CCHHHHHHHHHHHHhhcC-C-CCceEEEeecCH-HH-H
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFG-ITEGVDFIAISFV-KSAEVINHLKSYIAARSR-D-SDIAVIAKIESI-DS-L 339 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~a-l~~gvD~I~lSfV-~saedV~~lr~~l~~~~~-~-~~i~IiAKIEt~-~a-v 339 (584)
|||.+.|+.. +|..|+..|... .+.|+|.|=+.|- -++++.+.++.+.+.... . ....+.++|-.. .+ -
T Consensus 93 RDGeQ~~gv~-----fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~ 167 (503)
T PLN03228 93 RDGEQSPGGS-----LTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKK 167 (503)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCH
Confidence 5555566654 355677777655 4689999988664 456666556555431100 0 000112222100 00 0
Q ss_pred hcHHHHHHh-----CCEE--EEeCCccccc----CCCCChHHHHHHHHHHHHHcCCC-eEEehhhhHhhhcCCCCChhh-
Q 007936 340 KNLEEIILA-----SDGA--MVARGDLGAQ----IPLEQVPSAQQKIVQLCRQLNKP-VIVASQLLESMIEYPTPTRAE- 406 (584)
Q Consensus 340 ~NldeIl~~-----sDGI--mIaRGDLg~e----i~~e~V~~~Qk~II~~c~~~gKP-vivATqmLeSMi~~p~PTrAE- 406 (584)
+.+|..+++ .|.| +++-.|+-.+ ...+++.......++.++++|.. |.+.. +.-+|++
T Consensus 168 ~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~---------EDa~Rtd~ 238 (503)
T PLN03228 168 RDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC---------EDGGRSDK 238 (503)
T ss_pred hhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc---------ccccccCH
Confidence 123333333 2333 4444444322 22356666667899999999975 44432 1233333
Q ss_pred --HHHHH-HHHHcccceEeecCCCCCCCChHHHHHHHHHHHHH
Q 007936 407 --VADVS-EAVRQRADALMLSGESAMGQFPDKALTVLRSVSLR 446 (584)
Q Consensus 407 --v~Dv~-nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~ 446 (584)
+.+++ .+...|+|.+.|. +|.=...|.++-+.+..+...
T Consensus 239 efl~~~~~~a~~~Gad~I~l~-DTvG~~tP~~v~~lV~~l~~~ 280 (503)
T PLN03228 239 EFLCKILGEAIKAGATSVGIA-DTVGINMPHEFGELVTYVKAN 280 (503)
T ss_pred HHHHHHHHHHHhcCCCEEEEe-cCCCCCCHHHHHHHHHHHHHH
Confidence 44444 4667899999887 888888999988888777643
No 239
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=63.08 E-value=66 Score=32.48 Aligned_cols=141 Identities=12% Similarity=0.140 Sum_probs=86.0
Q ss_pred CCCCccCHhhh-HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh--------C
Q 007936 279 PTISPKDWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA--------S 349 (584)
Q Consensus 279 p~lt~kD~~dI-~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~--------s 349 (584)
|..|+.|.+.+ +.|.++|+..|++ .+..+..+++.|+ +.++++.+=|=-|.|-...+.-+.. +
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv----~p~~v~~a~~~l~----~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GA 84 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCV----NPSYVPLAKELLK----GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGA 84 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEe----CHHHHHHHHHHcC----CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCC
Confidence 55677776655 5688889999988 4778999999883 3468888888666666554333322 3
Q ss_pred CEEEEeCCcccccCCC---CChHHHH---HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHH-HHHcccceEe
Q 007936 350 DGAMVARGDLGAQIPL---EQVPSAQ---QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE-AVRQRADALM 422 (584)
Q Consensus 350 DGImIaRGDLg~ei~~---e~V~~~Q---k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av~~G~D~im 422 (584)
|.|=+ -+.++. .+...+. +.|.+.|. |+|+-+ +||. +.-+..|+..... ++..|+|.+=
T Consensus 85 dEiDv-----v~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv---IlE~----~~L~~~ei~~a~~ia~eaGADfvK 150 (211)
T TIGR00126 85 DEVDM-----VINIGALKDGNEEVVYDDIRAVVEACA--GVLLKV---IIET----GLLTDEEIRKACEICIDAGADFVK 150 (211)
T ss_pred CEEEe-----ecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEE
Confidence 43322 222332 2333333 44445553 888766 3442 3344466655555 7888999986
Q ss_pred ecCCCCCCCC----hHHHHHHHHHHHH
Q 007936 423 LSGESAMGQF----PDKALTVLRSVSL 445 (584)
Q Consensus 423 Ls~ETa~G~y----PveaV~~m~~I~~ 445 (584)
-| .|.. -.+.++.|++++.
T Consensus 151 Ts----TGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 151 TS----TGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred eC----CCCCCCCCCHHHHHHHHHHhc
Confidence 55 4433 3577788877764
No 240
>PLN02417 dihydrodipicolinate synthase
Probab=62.84 E-value=44 Score=34.74 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=59.1
Q ss_pred HhhhHHhHhcCCCEEEEc------CCCCHHHHHHHHHHHHhhcCCCCceEEEeec---CHHHHhcHHHHHHh-CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAIS------FVKSAEVINHLKSYIAARSRDSDIAVIAKIE---SIDSLKNLEEIILA-SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lS------fV~saedV~~lr~~l~~~~~~~~i~IiAKIE---t~~av~NldeIl~~-sDGImIa 355 (584)
.+.++|.++.|+|+|++. +.-|.++-.++.+... +..+.+++|++-+= |.++++....--+. +|++|+.
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~-~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~ 103 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTV-NCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 103 (280)
T ss_pred HHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHH-HHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 345678899999999874 2234444444444332 22345688999884 55666665555555 8999998
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+-...- .+.+.+...-+.|.+. . |+++-
T Consensus 104 ~P~y~~-~~~~~i~~~f~~va~~----~-pi~lY 131 (280)
T PLN02417 104 NPYYGK-TSQEGLIKHFETVLDM----G-PTIIY 131 (280)
T ss_pred CCccCC-CCHHHHHHHHHHHHhh----C-CEEEE
Confidence 876532 2334555555555542 3 88754
No 241
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=62.80 E-value=1.4e+02 Score=30.79 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=73.9
Q ss_pred CHhhhHH-hHhcCCCEEEE-----cCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHh---cHHHHHHh-CCEEEE
Q 007936 285 DWLDIDF-GITEGVDFIAI-----SFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLK---NLEEIILA-SDGAMV 354 (584)
Q Consensus 285 D~~dI~~-al~~gvD~I~l-----SfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~---NldeIl~~-sDGImI 354 (584)
|..++.. ..+.|++.|.+ -|=.+.+++..+++.. +++|+.| +=+- .+++.... +|+|.+
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-------~iPvl~k----dfi~~~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-------SLPVLRK----DFIIDPYQIYEARAAGADAILL 139 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-------CCCEEee----eecCCHHHHHHHHHcCCCEEEE
Confidence 4455544 35679999977 6778999999999875 3666643 1122 24444444 799988
Q ss_pred eCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCC
Q 007936 355 ARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGE 426 (584)
Q Consensus 355 aRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~E 426 (584)
.=.+|. +.--+.++..|+..|.-+++-+ -+.+ ++..|...|+|.+.+++.
T Consensus 140 i~~~l~--------~~~l~~li~~a~~lGl~~lvev-----------h~~~---E~~~A~~~gadiIgin~r 189 (260)
T PRK00278 140 IVAALD--------DEQLKELLDYAHSLGLDVLVEV-----------HDEE---ELERALKLGAPLIGINNR 189 (260)
T ss_pred EeccCC--------HHHHHHHHHHHHHcCCeEEEEe-----------CCHH---HHHHHHHcCCCEEEECCC
Confidence 655543 2456789999999999988753 2333 345577889999998753
No 242
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=62.54 E-value=58 Score=34.01 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=56.7
Q ss_pred HhhhHHhHhcCCCEEEEc------CCCCHHHHHHHHHHHHhhcCCCCceEEEeec--CHHHHhcHHHHHHh-CCEEEEeC
Q 007936 286 WLDIDFGITEGVDFIAIS------FVKSAEVINHLKSYIAARSRDSDIAVIAKIE--SIDSLKNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lS------fV~saedV~~lr~~l~~~~~~~~i~IiAKIE--t~~av~NldeIl~~-sDGImIaR 356 (584)
.+.+++.++.|+|+|++. +--|.++-.++.+...+ ..+.++.||+-+- |.++++.....-+. +|++|+.+
T Consensus 24 ~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~-~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVE-ETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHH-HhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 345678899999998775 34455555555544432 2345688888884 23333322222222 79999976
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 357 GDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 357 GDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
--+.. .+.+.+...-+.+ |.+.+.|+++-
T Consensus 103 P~y~~-~~~~~i~~~f~~v---~~~~~~pi~lY 131 (289)
T cd00951 103 PYLTE-APQEGLYAHVEAV---CKSTDLGVIVY 131 (289)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 55421 2223444444444 44557898875
No 243
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=62.43 E-value=89 Score=32.63 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=60.4
Q ss_pred HhhhHHhHh-cCCCEEEEc------CCCCHHHHHHHHHHHHhhcCCCCceEEEeec---CHHHHhcHHHHHHh-CCEEEE
Q 007936 286 WLDIDFGIT-EGVDFIAIS------FVKSAEVINHLKSYIAARSRDSDIAVIAKIE---SIDSLKNLEEIILA-SDGAMV 354 (584)
Q Consensus 286 ~~dI~~al~-~gvD~I~lS------fV~saedV~~lr~~l~~~~~~~~i~IiAKIE---t~~av~NldeIl~~-sDGImI 354 (584)
.+.+++.++ .|+++|++. +.=|.++-.++.+... +..+.++.||+.+- |.++++.....-+. +|++|+
T Consensus 27 ~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~-~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVA-EEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISA 105 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHH-HHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 455688899 999998764 3334455555444332 22345689999994 56666666666555 899999
Q ss_pred eCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 355 ARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 355 aRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
.+..+.- ...+.+. +..-..|.+.+.|+++-
T Consensus 106 ~~P~y~~-~~~~~l~---~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 106 VTPFYYP-FSFEEIC---DYYREIIDSADNPMIVY 136 (293)
T ss_pred eCCcCCC-CCHHHHH---HHHHHHHHhCCCCEEEE
Confidence 8755411 1112333 33334455567898875
No 244
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=62.22 E-value=27 Score=30.01 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=38.0
Q ss_pred EEEeccc-chhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcC-------ceeCCCceee
Q 007936 209 TITVNYD-GFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDP-------GLLLPRANLT 263 (584)
Q Consensus 209 ~i~v~~~-~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~-------G~l~s~Kgvn 263 (584)
.+.+..+ ..+..+.+||.|-+|+ +.|.|.++.++.+...+... |.++.+.-||
T Consensus 21 ~~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~~~~G~~VN 81 (85)
T PF00677_consen 21 RLRIEIPDKILSDLKIGGSIAVNG--VCLTVTDINEDWFEVDLIPETLRRTTLGNLKVGDRVN 81 (85)
T ss_dssp EEEEEESTGGGGTG-TTSEEEETT--EEEEEEEEETTEEEEEEEHHHHHCSSGGG--TTSEEE
T ss_pred EEEEEcCHHHHhhCccCcEEEECC--eeeEEEEecCCEEEEechHHHhhhchhccCCCCCEEE
Confidence 4455555 6788999999999977 99999999999888766542 4555556666
No 245
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=62.16 E-value=1.1e+02 Score=32.03 Aligned_cols=118 Identities=14% Similarity=0.246 Sum_probs=74.8
Q ss_pred hHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCCh
Q 007936 289 IDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQV 368 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V 368 (584)
++.+.+.|+|++++|=.-- |+-.++++.++. ..+.+|.-|=-.-.-+.+..|.+.++|.+=.-+=.|+.=.-..+
T Consensus 108 ~~~~~~aGvdGlIipDLP~-ee~~~~~~~~~~----~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~ 182 (259)
T PF00290_consen 108 FKEAKEAGVDGLIIPDLPP-EESEELREAAKK----HGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTEL 182 (259)
T ss_dssp HHHHHHHTEEEEEETTSBG-GGHHHHHHHHHH----TT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSC
T ss_pred HHHHHHcCCCEEEEcCCCh-HHHHHHHHHHHH----cCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccc
Confidence 4666789999999997653 555677777742 23566666655456678999999988776443334442222456
Q ss_pred HHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 369 PSAQQKIVQLCRQL-NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 369 ~~~Qk~II~~c~~~-gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+.-.+..++..+++ ++|+.+- -..=|++.+ .... .|+|++...
T Consensus 183 ~~~l~~~i~~ik~~~~~Pv~vG---------FGI~~~e~~---~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 183 PDELKEFIKRIKKHTDLPVAVG---------FGISTPEQA---KKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHHHTTSS-EEEE---------SSS-SHHHH---HHHH-TTSSEEEES
T ss_pred hHHHHHHHHHHHhhcCcceEEe---------cCCCCHHHH---HHHH-ccCCEEEEC
Confidence 77777888888877 5888764 234444433 3333 999999986
No 246
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=61.87 E-value=11 Score=42.78 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=38.0
Q ss_pred EecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHH
Q 007936 111 CTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRR 155 (584)
Q Consensus 111 ~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 155 (584)
+.+|..-.+.+.++.|+++|+++.=||.+||...+..+.|+++|+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 467776566899999999999999999999988777777777775
No 247
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=61.54 E-value=1.9e+02 Score=29.37 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=74.4
Q ss_pred cCHhhhHHhHhcCCCEEEEcC--CCCHHHHHHHHHHHHhhcCCCCceE-------EEeecCH-HHHhcHHHHHHh-----
Q 007936 284 KDWLDIDFGITEGVDFIAISF--VKSAEVINHLKSYIAARSRDSDIAV-------IAKIESI-DSLKNLEEIILA----- 348 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSf--V~saedV~~lr~~l~~~~~~~~i~I-------iAKIEt~-~av~NldeIl~~----- 348 (584)
.+.+|++..++.|+|.+.+.- .++++-+.++.+.+. .++.+ ..|+.-- +.-.++.++++.
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~-----~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G 159 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARVIAEHG-----DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAG 159 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhh-----hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcC
Confidence 457899999999999877654 467777777665541 22211 1111000 011133333332
Q ss_pred CCEEEEe-CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCC
Q 007936 349 SDGAMVA-RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGES 427 (584)
Q Consensus 349 sDGImIa-RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ET 427 (584)
++.+++- |.==|..-|+ ++ +.+-+.++..+.|+|.+.. .-+..++.++.+....|+|++|+..--
T Consensus 160 ~~~iiv~~~~~~g~~~G~-d~----~~i~~i~~~~~ipviasGG---------i~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 160 CSRYVVTDVTKDGTLTGP-NL----ELLREVCARTDAPVVASGG---------VSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred CCEEEEEeecCCCCccCC-CH----HHHHHHHhhCCCCEEEeCC---------CCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 5666653 2212222232 32 2233334556899998743 445554444433334699999998777
Q ss_pred CCCCChHHHH
Q 007936 428 AMGQFPDKAL 437 (584)
Q Consensus 428 a~G~yPveaV 437 (584)
-.|+++++-.
T Consensus 226 ~~g~~~~~~~ 235 (241)
T PRK14024 226 YAGAFTLPEA 235 (241)
T ss_pred HcCCCCHHHH
Confidence 7788877654
No 248
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=61.42 E-value=74 Score=34.40 Aligned_cols=121 Identities=12% Similarity=0.183 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 373 QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 373 k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
.-+...|++.|.|+.+. .|..+....+...-..|++.++. + ....++.+...+++.+-. ++
T Consensus 61 ~alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~-~-----~~~~~a~~~a~~~~~~~~-~~- 121 (380)
T TIGR01127 61 QGVAYAAKKFGIKAVIV-----------MPESAPPSKVKATKSYGAEVILH-G-----DDYDEAYAFATSLAEEEG-RV- 121 (380)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCcHHHHHHHHHCCCEEEEE-C-----CCHHHHHHHHHHHHHhcC-CE-
Confidence 45667899999999886 34444444566667789987754 2 234566666555543321 11
Q ss_pred hhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhc-CCcEEEEccCCchHHHHHh----ccCCCCcEEEEcCchh
Q 007936 453 EEKRHEAMELPDVGSSFAESISEEICNSAAKMANNL-EVDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTTS 523 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l-~a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~~ 523 (584)
..++... + ........-+.|+.+++ +.++||+..-+|.+..-++ .+.|.+.|++|-+...
T Consensus 122 --------~~~~~~~--~-~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~ 186 (380)
T TIGR01127 122 --------FVHPFDD--E-FVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA 186 (380)
T ss_pred --------ecCCCCC--h-hhhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1111111 1 11122334456777776 5899999999999886555 4469999999999643
No 249
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=61.20 E-value=12 Score=41.38 Aligned_cols=50 Identities=12% Similarity=0.282 Sum_probs=41.4
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHH
Q 007936 106 RTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRR 155 (584)
Q Consensus 106 ~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 155 (584)
|-..-+.+|+.-.+.+..+.|+++|+|+.=|..+||..+...++++++|+
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 34567778886556789999999999999999999987777777777775
No 250
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=60.86 E-value=68 Score=32.84 Aligned_cols=114 Identities=21% Similarity=0.214 Sum_probs=70.6
Q ss_pred HhhhHHhHhcCCCEEEE---------------cCCCCHHHHHHHHHHHHhhcCC-CCceEEEeecCHH--------HHhc
Q 007936 286 WLDIDFGITEGVDFIAI---------------SFVKSAEVINHLKSYIAARSRD-SDIAVIAKIESID--------SLKN 341 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~l---------------SfV~saedV~~lr~~l~~~~~~-~~i~IiAKIEt~~--------av~N 341 (584)
.+.+++..+.|+++|.+ ..+...+.+..++...+... + .+..|+|..|+.. +++.
T Consensus 87 ~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~-~~~~~~IiARTDa~~~~~~~~~eai~R 165 (243)
T cd00377 87 ARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD-DLPDFVIIARTDALLAGEEGLDEAIER 165 (243)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh-ccCCeEEEEEcCchhccCCCHHHHHHH
Confidence 34456667899999999 55666666677766664321 2 4799999976643 3444
Q ss_pred HHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCC-CChhhHHHHHHHHHcccc
Q 007936 342 LEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPT-PTRAEVADVSEAVRQRAD 419 (584)
Q Consensus 342 ldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~-PTrAEv~Dv~nav~~G~D 419 (584)
...-.++ +|++|+-... -.+++-+.+++...|+.+- +..++. ++..|+. ..|+.
T Consensus 166 a~ay~~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~~------~~~~~~~~~~~~l~------~lG~~ 221 (243)
T cd00377 166 AKAYAEAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNVN------MTPGGNLLTVAELA------ELGVR 221 (243)
T ss_pred HHHHHHcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEEE------ecCCCCCCCHHHHH------HCCCe
Confidence 4444444 8999984211 2256666777788998864 222222 4555554 44888
Q ss_pred eEeec
Q 007936 420 ALMLS 424 (584)
Q Consensus 420 ~imLs 424 (584)
-+...
T Consensus 222 ~v~~~ 226 (243)
T cd00377 222 RVSYG 226 (243)
T ss_pred EEEEC
Confidence 77664
No 251
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=60.83 E-value=15 Score=39.61 Aligned_cols=48 Identities=19% Similarity=0.472 Sum_probs=38.7
Q ss_pred eEEE--ecCCCCCCHHHHHHHHHhcC--CEEEEeCCCCCHHHHHHHHHHHHH
Q 007936 108 KLVC--TIGPATCGFEQLEALAVGGM--NVARINMCHGTREWHRRVIERVRR 155 (584)
Q Consensus 108 KIi~--TiGPa~~~~e~l~~li~~Gm--~v~RiN~sHg~~e~~~~~i~~ir~ 155 (584)
.++| .+|....+.+...+|+++|+ |+.=|+.+||..+..+++|+++|+
T Consensus 85 ~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 85 GLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred ccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 3455 44444456789999999966 999999999999999999888886
No 252
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=60.79 E-value=65 Score=31.82 Aligned_cols=103 Identities=20% Similarity=0.174 Sum_probs=58.1
Q ss_pred CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCC---CCCChHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 007936 383 NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESA---MGQFPDKALTVLRSVSLRIEKWWREEKRHEA 459 (584)
Q Consensus 383 gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa---~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~ 459 (584)
+.++.++|-. +--....++..-+.++..|+.+|+|.+-..---. .|.| -+..+.|..++..+...
T Consensus 50 ~~~~~v~~~~--~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~-~~~~~ei~~v~~~~~g~--------- 117 (203)
T cd00959 50 GSGVKVCTVI--GFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDY-EAVYEEIAAVVEACGGA--------- 117 (203)
T ss_pred CCCcEEEEEE--ecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCH-HHHHHHHHHHHHhcCCC---------
Confidence 3556655431 1112224556667889999999999988754432 2333 55666677776655421
Q ss_pred ccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCCchH
Q 007936 460 MELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGHM 502 (584)
Q Consensus 460 ~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~sG~t 502 (584)
++.-.......+ +.....|+++|.+++|+ ++=|.||.+
T Consensus 118 -~lkvI~e~~~l~--~~~i~~a~ria~e~GaD--~IKTsTG~~ 155 (203)
T cd00959 118 -PLKVILETGLLT--DEEIIKACEIAIEAGAD--FIKTSTGFG 155 (203)
T ss_pred -eEEEEEecCCCC--HHHHHHHHHHHHHhCCC--EEEcCCCCC
Confidence 100000000111 33456678899999999 455556754
No 253
>PLN02970 serine racemase
Probab=60.28 E-value=1.1e+02 Score=32.62 Aligned_cols=154 Identities=14% Similarity=0.142 Sum_probs=89.3
Q ss_pred ceEEEeecCHH---------HHhcHHHHHHh--CCEEEEe-CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhH
Q 007936 327 IAVIAKIESID---------SLKNLEEIILA--SDGAMVA-RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLE 394 (584)
Q Consensus 327 i~IiAKIEt~~---------av~NldeIl~~--sDGImIa-RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLe 394 (584)
..|+.|.|..+ |..-+....+. ..+|+.+ .|..|. -+...|+.+|.|+.+.
T Consensus 42 ~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~aSsGN~g~------------alA~~a~~~G~~~~iv----- 104 (328)
T PLN02970 42 RSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAA------------ALALAAKLRGIPAYIV----- 104 (328)
T ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEEECCcHHHH------------HHHHHHHHcCCCEEEE-----
Confidence 47999999875 22222222211 2344433 233333 4566899999999886
Q ss_pred hhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChH
Q 007936 395 SMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESIS 474 (584)
Q Consensus 395 SMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (584)
.|..+.-..+.+.-..|++.+...+ ...++.++.+++.++ ..++ ..++... + ...
T Consensus 105 ------vp~~~~~~k~~~~~~~GA~Vi~~~~------~~~~~~~~a~~la~~-~g~~---------~~~~~~n--~-~~~ 159 (328)
T PLN02970 105 ------VPKNAPACKVDAVIRYGGIITWCEP------TVESREAVAARVQQE-TGAV---------LIHPYND--G-RVI 159 (328)
T ss_pred ------ECCCCCHHHHHHHHhcCCEEEEeCC------CHHHHHHHHHHHHHh-cCCE---------EeCCCCC--c-chh
Confidence 3333333344556668999876543 234455555554332 1111 1122111 1 112
Q ss_pred HHHHHHHHHHHhhc-CCcEEEEccCCchHHHHHhcc----CCCCcEEEEcCch
Q 007936 475 EEICNSAAKMANNL-EVDALFVYTKTGHMASLLSRC----RPDCPIFAFTSTT 522 (584)
Q Consensus 475 ~~ia~sav~~A~~l-~a~aIvv~T~sG~tA~~lSr~----RP~~PIiavT~~~ 522 (584)
+....-+.|+.+++ ..++||+..-+|.+..-++++ .|.+.|+++-+..
T Consensus 160 ~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~ 212 (328)
T PLN02970 160 SGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKG 212 (328)
T ss_pred hehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECC
Confidence 22233466666666 479999999999998777765 8999999998853
No 254
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=60.26 E-value=1.5e+02 Score=31.49 Aligned_cols=113 Identities=13% Similarity=0.231 Sum_probs=76.1
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHH
Q 007936 303 SFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQ 381 (584)
Q Consensus 303 SfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~ 381 (584)
.-.+++++|+++++.. +++||+|+---- +...+.+.+. +|.| | ..+..-+ -...+...+.
T Consensus 51 ~R~~~p~~I~~I~~~V-------~iPVig~~kigh-~~Ea~~L~~~GvDiI-----D-eTe~lrP-----ade~~~~~K~ 111 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAV-------SIPVMAKVRIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADWTFHIDKK 111 (287)
T ss_pred eecCCHHHHHHHHHhC-------CCCEEEEeeccH-HHHHHHHHHcCCCEE-----E-ccCCCCc-----HHHHHHHHHH
Confidence 4567888888888876 488998874222 5555666555 7877 4 2222212 2444444444
Q ss_pred -cCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhh
Q 007936 382 -LNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEK 449 (584)
Q Consensus 382 -~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~ 449 (584)
++.|+..- -..+.+.-+++..|+|.|--++|--.| +-+|||+-|+.+-.++..
T Consensus 112 ~f~vpfmad--------------~~~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~ 165 (287)
T TIGR00343 112 KFKVPFVCG--------------ARDLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQ 165 (287)
T ss_pred HcCCCEEcc--------------CCCHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHH
Confidence 47776532 123556677899999999999997777 689999999999887764
No 255
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=59.94 E-value=18 Score=31.29 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=33.1
Q ss_pred cchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeC
Q 007936 215 DGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLL 257 (584)
Q Consensus 215 ~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~ 257 (584)
.++.+.+++||+|..-.| +.=+|.+++++.+..++..|..++
T Consensus 32 ~~m~~~L~~Gd~VvT~gG-i~G~V~~i~d~~v~vei~~g~~i~ 73 (84)
T TIGR00739 32 KKLIESLKKGDKVLTIGG-IIGTVTKIAENTIVIELNDNTEIT 73 (84)
T ss_pred HHHHHhCCCCCEEEECCC-eEEEEEEEeCCEEEEEECCCeEEE
Confidence 468889999999999988 556777899998887776554443
No 256
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=59.75 E-value=16 Score=40.98 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=61.5
Q ss_pred cCHhhhHHhHhcCCCEEEEcC------CCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHH---hCCEEEE
Q 007936 284 KDWLDIDFGITEGVDFIAISF------VKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIIL---ASDGAMV 354 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSf------V~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~---~sDGImI 354 (584)
.+.++++.+++.|++.|.+.. --+.+.-.++..++ ..++.+|+ |+ |+.+-+++.. .+||++|
T Consensus 167 h~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~i-----p~~~~~vs--eS--GI~t~~d~~~~~~~~davLi 237 (454)
T PRK09427 167 SNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLI-----PADVIVIS--ES--GIYTHAQVRELSPFANGFLI 237 (454)
T ss_pred CCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhC-----CCCcEEEE--eC--CCCCHHHHHHHHhcCCEEEE
Confidence 678889999999999999875 22333344444444 23445554 22 4444444433 3899999
Q ss_pred eCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 355 ARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 355 aRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
|-.-+..+=|.+ .-++++. ..=|-|++. ...|+..+...|+|++=+
T Consensus 238 G~~lm~~~d~~~----~~~~L~~---~~vKICGit----------------~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 238 GSSLMAEDDLEL----AVRKLIL---GENKVCGLT----------------RPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred CHHHcCCCCHHH----HHHHHhc---cccccCCCC----------------CHHHHHHHHhCCCCEEee
Confidence 866554443322 2222221 122444542 345667777788887655
No 257
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=59.62 E-value=25 Score=38.29 Aligned_cols=74 Identities=18% Similarity=0.009 Sum_probs=48.2
Q ss_pred CCcccccccchHhhhcCCCCCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCC
Q 007936 83 SSSIEVDSVTEAELKENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGF 162 (584)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~ 162 (584)
+.+.++|++|..||+...-. . ..+||.| ||.. +.+.|+..++.|. ++|+- +.++..++ +++.++.+.
T Consensus 49 ~~g~G~D~aS~gEl~~al~a-~-~~~~i~~-~~~k-~~~el~~a~~~g~---~i~id--S~~el~~l----~~~a~~~~~ 115 (380)
T TIGR01047 49 EYLDGCTASGLWEAKLAKEE-F-GKEIHVY-SPAY-SEEDVPEIIPLAD---HIIFN--SLAQWARY----RHLVEGKNS 115 (380)
T ss_pred HHCCcccccCHHHHHHHHHH-C-CCcEEEE-CCCC-CHHHHHHHHHcCC---EEEEC--CHHHHHHH----HHHHHhcCC
Confidence 44588999999999944211 2 2788999 8866 6889999999985 45665 66655543 333333444
Q ss_pred ceEEEee
Q 007936 163 AVAIMMD 169 (584)
Q Consensus 163 ~i~I~lD 169 (584)
...|++-
T Consensus 116 ~~~i~lR 122 (380)
T TIGR01047 116 AVKLGLR 122 (380)
T ss_pred CceEEEE
Confidence 3444443
No 258
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=59.49 E-value=1.2e+02 Score=31.75 Aligned_cols=99 Identities=15% Similarity=0.083 Sum_probs=59.6
Q ss_pred HhhhHHhHhcC-CCEEEEc------CCCCHHHHHHHHHHHHhhcCCCCceEEEeec---CHHHHhcHHHHHHh-CCEEEE
Q 007936 286 WLDIDFGITEG-VDFIAIS------FVKSAEVINHLKSYIAARSRDSDIAVIAKIE---SIDSLKNLEEIILA-SDGAMV 354 (584)
Q Consensus 286 ~~dI~~al~~g-vD~I~lS------fV~saedV~~lr~~l~~~~~~~~i~IiAKIE---t~~av~NldeIl~~-sDGImI 354 (584)
.+.+++.++.| +|+|++. +-=|.++-.++.+...+ ..+.++.|++.+- |.++++-....-+. +||+|+
T Consensus 24 ~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~-~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKD-EAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred HHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHH-HhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 45568889999 9999876 55566666666554432 2345688999985 45555555554444 799999
Q ss_pred eCCcccccCCCCChHHHHHHHHHHHHHc-CCCeEEe
Q 007936 355 ARGDLGAQIPLEQVPSAQQKIVQLCRQL-NKPVIVA 389 (584)
Q Consensus 355 aRGDLg~ei~~e~V~~~Qk~II~~c~~~-gKPvivA 389 (584)
.+-.+-- ...+++...-+.+. .+. +.|+++-
T Consensus 103 ~~P~y~~-~~~~~i~~yf~~v~---~~~~~lpv~lY 134 (290)
T TIGR00683 103 VTPFYYK-FSFPEIKHYYDTII---AETGGLNMIVY 134 (290)
T ss_pred eCCcCCC-CCHHHHHHHHHHHH---hhCCCCCEEEE
Confidence 7644311 11233444444443 334 5787763
No 259
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=59.23 E-value=98 Score=34.15 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChhhHHHHHH-HHHcccceEeecCCC
Q 007936 367 QVPSAQQKIVQLCRQL-NKPVIVASQLLESMIEYPTPTRAEVADVSE-AVRQRADALMLSGES 427 (584)
Q Consensus 367 ~V~~~Qk~II~~c~~~-gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av~~G~D~imLs~ET 427 (584)
.-+..-++|++.+++. .+|+++= ..|.-.++.+++. +...|+|++.|.+=+
T Consensus 165 q~~e~~~~i~~~Vk~~~~iPv~vK----------LsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 165 QDCDLLEEVCGWINAKATVPVWAK----------MTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred cCHHHHHHHHHHHHHhhcCceEEE----------eCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 4578888888888875 7999973 4576667888888 667899999998543
No 260
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=59.14 E-value=2e+02 Score=30.20 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=77.0
Q ss_pred CCCccCHhhhHHhHhcCCCEEEEcCC-------------CCHHH-HHHHHHHHHhhcCCCCceEEEeec------CH-HH
Q 007936 280 TISPKDWLDIDFGITEGVDFIAISFV-------------KSAEV-INHLKSYIAARSRDSDIAVIAKIE------SI-DS 338 (584)
Q Consensus 280 ~lt~kD~~dI~~al~~gvD~I~lSfV-------------~saed-V~~lr~~l~~~~~~~~i~IiAKIE------t~-~a 338 (584)
-++-+|..-.+.+-+.|+|.|.+..- =+.++ +..++... +.. ....|++=++ ++ ++
T Consensus 19 ~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~--r~~-~~p~vvaD~pfg~y~~~~~~a 95 (264)
T PRK00311 19 MLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVA--RGA-PRALVVADMPFGSYQASPEQA 95 (264)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHH--hcC-CCCcEEEeCCCCCccCCHHHH
Confidence 34678888888888999999976411 01222 23333333 221 2345788775 33 46
Q ss_pred HhcHHHHHH-h-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeE----EehhhhHh----hhcCCCCChh-h-
Q 007936 339 LKNLEEIIL-A-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVI----VASQLLES----MIEYPTPTRA-E- 406 (584)
Q Consensus 339 v~NldeIl~-~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvi----vATqmLeS----Mi~~p~PTrA-E- 406 (584)
++|.-.+++ . ++||-|-=| ..+...|+++.++|.||+ +--|--.. .+......++ |
T Consensus 96 v~~a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~ 163 (264)
T PRK00311 96 LRNAGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKL 163 (264)
T ss_pred HHHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHH
Confidence 888888888 3 789998543 246677888889999996 21121111 1111111212 2
Q ss_pred HHHHHHHHHcccceEeec
Q 007936 407 VADVSEAVRQRADALMLS 424 (584)
Q Consensus 407 v~Dv~nav~~G~D~imLs 424 (584)
+.+.-.....|+|+++|-
T Consensus 164 i~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 164 LEDAKALEEAGAFALVLE 181 (264)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 344455668899999984
No 261
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=59.13 E-value=1.8e+02 Score=31.30 Aligned_cols=149 Identities=23% Similarity=0.394 Sum_probs=94.2
Q ss_pred CccCHhhhHHhHh-cC-CCEEEE--cCCC---------CHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh
Q 007936 282 SPKDWLDIDFGIT-EG-VDFIAI--SFVK---------SAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA 348 (584)
Q Consensus 282 t~kD~~dI~~al~-~g-vD~I~l--SfV~---------saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~ 348 (584)
++.++.|....++ .+ +|+|-+ |..+ +++.+.++.+.++.. .+..|++||= + -+.++++|++.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~---~~~Pv~vKl~-P-~~~di~~iA~~ 181 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA---TKVPVFVKLA-P-NITDIDEIAKA 181 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc---ccCceEEEeC-C-CHHHHHHHHHH
Confidence 5777888877664 34 788654 3222 556666666666432 3489999994 4 56667777666
Q ss_pred -----CCEEEEeC-------CcccccCC--------C---CChHHHHHHHHHHHHHcC--CCeEEehhhhHhhhcCCCCC
Q 007936 349 -----SDGAMVAR-------GDLGAQIP--------L---EQVPSAQQKIVQLCRQLN--KPVIVASQLLESMIEYPTPT 403 (584)
Q Consensus 349 -----sDGImIaR-------GDLg~ei~--------~---e~V~~~Qk~II~~c~~~g--KPvivATqmLeSMi~~p~PT 403 (584)
+|||..-= .|+....| + .--|.+-+.+-+.+++.+ .|+|-.--+.
T Consensus 182 ~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~---------- 251 (310)
T COG0167 182 AEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIE---------- 251 (310)
T ss_pred HHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcC----------
Confidence 58886532 34444211 1 245666677777788877 8877543222
Q ss_pred hhhHHHHHHHHHcccceEeecCCCCCCCC-hHHHHHHHHHHHHHHhhhhhh
Q 007936 404 RAEVADVSEAVRQRADALMLSGESAMGQF-PDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 404 rAEv~Dv~nav~~G~D~imLs~ETa~G~y-PveaV~~m~~I~~~aE~~~~~ 453 (584)
-..|....++.||+++.+. |+.=.+ | .+..+|++..++|+.+
T Consensus 252 --s~~DA~E~i~aGA~~vQv~--Tal~~~Gp----~i~~~I~~~l~~~l~~ 294 (310)
T COG0167 252 --TGEDALEFILAGASAVQVG--TALIYKGP----GIVKEIIKGLARWLEE 294 (310)
T ss_pred --cHHHHHHHHHcCCchheee--eeeeeeCc----hHHHHHHHHHHHHHHH
Confidence 3568899999999999886 555555 4 2455666666666543
No 262
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=59.00 E-value=51 Score=32.55 Aligned_cols=139 Identities=19% Similarity=0.223 Sum_probs=80.1
Q ss_pred CCCCccCHhhh-HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHh-------cHHHHHHh-C
Q 007936 279 PTISPKDWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLK-------NLEEIILA-S 349 (584)
Q Consensus 279 p~lt~kD~~dI-~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~-------NldeIl~~-s 349 (584)
|..++.|.+.+ +.+.+.++|.|+++ +..+..+++.+. +..+.+-+=+=.+.|-. ..++-++. +
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~----~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GA 83 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALK----GSGVKVCTVIGFPLGATTTEVKVAEAREAIADGA 83 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcC----CCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCC
Confidence 56676666554 56777899999988 677777777773 22355555454343322 34444444 6
Q ss_pred CEEEEeCCcccccCCC------CChHHHHHHHHHHHHHcCCCeEE--ehhhhHhhhcCCCCChhhHHHHHH-HHHcccce
Q 007936 350 DGAMVARGDLGAQIPL------EQVPSAQQKIVQLCRQLNKPVIV--ASQLLESMIEYPTPTRAEVADVSE-AVRQRADA 420 (584)
Q Consensus 350 DGImIaRGDLg~ei~~------e~V~~~Qk~II~~c~~~gKPviv--ATqmLeSMi~~p~PTrAEv~Dv~n-av~~G~D~ 420 (584)
|.|-+- +.++. +.+..-..++.+.|. |+|+.+ -+..| +..++...+. ++..|+|.
T Consensus 84 devdvv-----~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l---------~~~~i~~a~ria~e~GaD~ 147 (203)
T cd00959 84 DEIDMV-----INIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLL---------TDEEIIKACEIAIEAGADF 147 (203)
T ss_pred CEEEEe-----ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCC---------CHHHHHHHHHHHHHhCCCE
Confidence 765442 12221 223333344555554 788744 33222 3456666555 78889998
Q ss_pred EeecCCCCCCCC----hHHHHHHHHHHHH
Q 007936 421 LMLSGESAMGQF----PDKALTVLRSVSL 445 (584)
Q Consensus 421 imLs~ETa~G~y----PveaV~~m~~I~~ 445 (584)
+=-| .|.. -.+.++.|++++.
T Consensus 148 IKTs----TG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 148 IKTS----TGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred EEcC----CCCCCCCCCHHHHHHHHHHhC
Confidence 8654 4443 2467777777765
No 263
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=58.96 E-value=1.5e+02 Score=30.05 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=85.6
Q ss_pred CCCCccCHhhh-HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-----CCEE
Q 007936 279 PTISPKDWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-----SDGA 352 (584)
Q Consensus 279 p~lt~kD~~dI-~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-----sDGI 352 (584)
|..|+.|...+ +.|.+.|+..|+++ +..+..+++.|+ +..++|.+=|--|.|....+.-+.. .||.
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~----~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA 88 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK----GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGA 88 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC----CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCC
Confidence 55677766655 56888999999998 788999999883 3457888887666665544333322 1221
Q ss_pred EEeCCcccccCCC---CChHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChhhHHHHHH-HHHcccceEeecCCC
Q 007936 353 MVARGDLGAQIPL---EQVPSAQQKIVQLCRQ-LNKPVIVASQLLESMIEYPTPTRAEVADVSE-AVRQRADALMLSGES 427 (584)
Q Consensus 353 mIaRGDLg~ei~~---e~V~~~Qk~II~~c~~-~gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av~~G~D~imLs~ET 427 (584)
-- =|+.+.++. .++-.+.+.|-+.+.. .++++=+ +++.+.-+..|+.++.. ++..|+|.+--|.=-
T Consensus 89 ~E--iD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKv-------IlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~ 159 (221)
T PRK00507 89 DE--IDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKV-------IIETCLLTDEEKVKACEIAKEAGADFVKTSTGF 159 (221)
T ss_pred ce--EeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEE-------EeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 00 012222222 2455555555444443 2333221 23356667788888887 778899965443111
Q ss_pred CCCCChHHHHHHHHHHH
Q 007936 428 AMGQFPDKALTVLRSVS 444 (584)
Q Consensus 428 a~G~yPveaV~~m~~I~ 444 (584)
+.|---.+.|+.|++.+
T Consensus 160 ~~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 160 STGGATVEDVKLMRETV 176 (221)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 11223367777776554
No 264
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=58.91 E-value=99 Score=33.82 Aligned_cols=137 Identities=15% Similarity=0.231 Sum_probs=87.5
Q ss_pred hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeec--CHHHHhcHHHHHHhCCEEEEeCCcccccCCC
Q 007936 288 DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIE--SIDSLKNLEEIILASDGAMVARGDLGAQIPL 365 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIE--t~~av~NldeIl~~sDGImIaRGDLg~ei~~ 365 (584)
.|..-.+.|+|.|-+. |.+.++.+.++.+-+ ...++++|-|- -..|+ ..+=.-+|++=|-||.+
T Consensus 47 Qi~~L~~aGceiVRva-v~~~~~a~al~~I~~----~~~iPlvADIHFd~~lAl---~a~~~G~~~iRINPGNi------ 112 (360)
T PRK00366 47 QIKRLARAGCEIVRVA-VPDMEAAAALPEIKK----QLPVPLVADIHFDYRLAL---AAAEAGADALRINPGNI------ 112 (360)
T ss_pred HHHHHHHcCCCEEEEc-cCCHHHHHhHHHHHH----cCCCCEEEecCCCHHHHH---HHHHhCCCEEEECCCCC------
Confidence 3445567899987776 466777777766653 22589999983 33333 33334489999999998
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEeh-------hhhHhhhcCCCCChhhH-----HHHHHHHHcccceEeecCCCCCCCCh
Q 007936 366 EQVPSAQQKIVQLCRQLNKPVIVAS-------QLLESMIEYPTPTRAEV-----ADVSEAVRQRADALMLSGESAMGQFP 433 (584)
Q Consensus 366 e~V~~~Qk~II~~c~~~gKPvivAT-------qmLeSMi~~p~PTrAEv-----~Dv~nav~~G~D~imLs~ETa~G~yP 433 (584)
..+..--+.++++|+++|+|+=+-. ++|+. +..||..-+ ..+.-+-..|+|=+.+|--++ .|
T Consensus 113 g~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~---yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS---~v 186 (360)
T PRK00366 113 GKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEK---YGEPTPEALVESALRHAKILEELGFDDIKISVKAS---DV 186 (360)
T ss_pred CchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHH---cCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC---CH
Confidence 3445677899999999999975432 34443 233443221 233335567888888885444 46
Q ss_pred HHHHHHHHHHH
Q 007936 434 DKALTVLRSVS 444 (584)
Q Consensus 434 veaV~~m~~I~ 444 (584)
..+|+.-+.+.
T Consensus 187 ~~~i~ayrlla 197 (360)
T PRK00366 187 QDLIAAYRLLA 197 (360)
T ss_pred HHHHHHHHHHH
Confidence 66666555554
No 265
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=58.74 E-value=18 Score=35.99 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 007936 118 CGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNE 158 (584)
Q Consensus 118 ~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~ 158 (584)
+-.+.|.+|.++|++.|||.+-.-+.++..++++..|++-.
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~ 197 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALD 197 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHH
Confidence 44788999999999999999999999999999999998644
No 266
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=58.66 E-value=17 Score=41.28 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=40.7
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHH
Q 007936 109 LVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRR 155 (584)
Q Consensus 109 Ii~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 155 (584)
.=|.+|..-...|..+.|+++|+|+.=++.+||...+..+++++||+
T Consensus 239 vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 239 VGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 44568887777899999999999999999999998877778888886
No 267
>PRK08638 threonine dehydratase; Validated
Probab=58.53 E-value=1.1e+02 Score=32.87 Aligned_cols=120 Identities=14% Similarity=0.173 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 373 QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 373 k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
.-+...|+..|.|+++. .|..+--..+...-..|++-++.. ....++++.+.+++.+- .++
T Consensus 88 ~alA~~aa~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~a~~~-g~~- 148 (333)
T PRK08638 88 QGVALSCALLGIDGKVV-----------MPKGAPKSKVAATCGYGAEVVLHG------DNFNDTIAKVEEIVEEE-GRT- 148 (333)
T ss_pred HHHHHHHHHcCCCEEEE-----------eCCCCcHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhc-CCE-
Confidence 34566899999999986 344333334455556799888652 23456777666665442 111
Q ss_pred hhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhc-CCcEEEEccCCchHHHHHhcc----CCCCcEEEEcCch
Q 007936 453 EEKRHEAMELPDVGSSFAESISEEICNSAAKMANNL-EVDALFVYTKTGHMASLLSRC----RPDCPIFAFTSTT 522 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l-~a~aIvv~T~sG~tA~~lSr~----RP~~PIiavT~~~ 522 (584)
..++... + ...+....-+-|+.+++ +.++||+..-+|.+..-++++ .|.+.|+++-+..
T Consensus 149 --------~~~~~~~--~-~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g 212 (333)
T PRK08638 149 --------FIPPYDD--P-KVIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSEN 212 (333)
T ss_pred --------EcCcCCC--c-chhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1111111 1 11122233444555554 579999999999998877765 8999999998753
No 268
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.49 E-value=1.6e+02 Score=31.99 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=58.0
Q ss_pred EEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCC
Q 007936 351 GAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMG 430 (584)
Q Consensus 351 GImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G 430 (584)
.+|--....|--.|+. =|...+.+++. ...||++.- ..-+ -+|++.|++.|+|++++..=-+..
T Consensus 221 avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivdA---------GIg~---~sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 221 AVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVDA---------GVGT---ASDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred EEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEEeC---------CCCC---HHHHHHHHHcCCCEEEEcceeccC
Confidence 4444345555555655 35555555555 578998862 2222 268899999999999999888999
Q ss_pred CChHHHHHHHHHHHHHHhh
Q 007936 431 QFPDKALTVLRSVSLRIEK 449 (584)
Q Consensus 431 ~yPveaV~~m~~I~~~aE~ 449 (584)
+.|+.--+.|+.-++.-..
T Consensus 285 ~dPv~Ma~A~~~av~aGr~ 303 (326)
T PRK11840 285 KNPVLMARAMKLAVEAGRL 303 (326)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999888888776655544
No 269
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=58.46 E-value=63 Score=35.62 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 383 NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 383 gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
..|++++.-+- .-.||+.|+..|+|++++.
T Consensus 308 ~~~vi~dGGIr------------~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 308 RLTVLFDSGVR------------TGADIMKALALGAKAVLIG 337 (383)
T ss_pred CCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
Confidence 48999875433 3579999999999999985
No 270
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=58.15 E-value=24 Score=38.56 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=44.8
Q ss_pred HhhhHHhHhcCCCEEEEcCCC------CHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAISFVK------SAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~------saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIa 355 (584)
.+|.+.+.+.|+|+|.+|.-- .+..+..|.+..+ ..+.++.||+- -||.+-.+|+++ +|++|||
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~--av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAE--AVDKRVPIVFD----SGVRRGQHVFKALASGADLVALG 312 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHH--HhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEc
Confidence 678889999999999888622 1223333433331 12334677763 567777777766 8999999
Q ss_pred CCcc
Q 007936 356 RGDL 359 (584)
Q Consensus 356 RGDL 359 (584)
|-=|
T Consensus 313 R~~l 316 (367)
T TIGR02708 313 RPVI 316 (367)
T ss_pred HHHH
Confidence 9744
No 271
>PRK06801 hypothetical protein; Provisional
Probab=57.69 E-value=1.3e+02 Score=31.86 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=74.9
Q ss_pred CCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCC--C
Q 007936 325 SDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYP--T 401 (584)
Q Consensus 325 ~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p--~ 401 (584)
..+++........-++.+++-++. .+.||+.-. .+|+++-...-+++.+.|+.+|.+|=..=..+-.....+ .
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S----~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~ 148 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGS----TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYG 148 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccC
Confidence 357888888887666666666655 789999533 357788788889999999999998733222221111000 0
Q ss_pred C----ChhhHHHHHHHH-HcccceEeecCCCCCCCChH---HHHHHHHHHH
Q 007936 402 P----TRAEVADVSEAV-RQRADALMLSGESAMGQFPD---KALTVLRSVS 444 (584)
Q Consensus 402 P----TrAEv~Dv~nav-~~G~D~imLs~ETa~G~yPv---eaV~~m~~I~ 444 (584)
+ ......+...++ .-|+|++-++-=|+-|+|+- .-.+.+..|.
T Consensus 149 ~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~ 199 (286)
T PRK06801 149 EADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIH 199 (286)
T ss_pred CcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHH
Confidence 0 011224445566 68999999999999999964 2345555553
No 272
>PLN02535 glycolate oxidase
Probab=57.67 E-value=20 Score=39.21 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=46.2
Q ss_pred CHhhhHHhHhcCCCEEEEcC---------CCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCE
Q 007936 285 DWLDIDFGITEGVDFIAISF---------VKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDG 351 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSf---------V~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDG 351 (584)
+.+|.+.+.+.|+|+|.+|. +-+.+-+.++++.+ +.++.||+ --|+.|-.+|+++ +|+
T Consensus 233 ~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av-----~~~ipVi~----dGGIr~g~Dv~KALalGA~a 303 (364)
T PLN02535 233 TREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAV-----GGRVPVLL----DGGVRRGTDVFKALALGAQA 303 (364)
T ss_pred CHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHH-----hcCCCEEe----eCCCCCHHHHHHHHHcCCCE
Confidence 45678889999999999983 22344455554444 23466665 2678888888777 799
Q ss_pred EEEeCCcc
Q 007936 352 AMVARGDL 359 (584)
Q Consensus 352 ImIaRGDL 359 (584)
++|||.=|
T Consensus 304 V~vGr~~l 311 (364)
T PLN02535 304 VLVGRPVI 311 (364)
T ss_pred EEECHHHH
Confidence 99998765
No 273
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=57.66 E-value=56 Score=33.95 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=57.0
Q ss_pred HhhhHHhHhcCCCEEEEcCC------CCHHHHHHHHHHHHhhcCCCCceEEEeec---CHHHHhcHHHHHHh-CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAISFV------KSAEVINHLKSYIAARSRDSDIAVIAKIE---SIDSLKNLEEIILA-SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV------~saedV~~lr~~l~~~~~~~~i~IiAKIE---t~~av~NldeIl~~-sDGImIa 355 (584)
.+.++|.++.|+|+|++.-- =|.++=.++-+...+ ..+.++.|++-+= +.++++.....-+. +|++|+.
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~-~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVE-AVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVV 103 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHH-HhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEEC
Confidence 34567889999999986422 233333333333321 2344678888884 44555555554444 7999997
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+-.+.. .+-+.+...-+.|+ .+.+.|+++-
T Consensus 104 pP~~~~-~~~~~i~~~~~~ia---~~~~~pv~lY 133 (292)
T PRK03170 104 TPYYNK-PTQEGLYQHFKAIA---EATDLPIILY 133 (292)
T ss_pred CCcCCC-CCHHHHHHHHHHHH---hcCCCCEEEE
Confidence 665422 12234444444454 4457898875
No 274
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=57.59 E-value=95 Score=32.83 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=60.0
Q ss_pred HhhhHHhHhcCCCEEEEc------CCCCHHHHHHHHHHHHhhcCCCCceEEEeec---CHHHHhcHHHHHHh-CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAIS------FVKSAEVINHLKSYIAARSRDSDIAVIAKIE---SIDSLKNLEEIILA-SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lS------fV~saedV~~lr~~l~~~~~~~~i~IiAKIE---t~~av~NldeIl~~-sDGImIa 355 (584)
.+.++|.++.|+|+|++. +--|.++=.++.+... ...+..++||+-+= |.++++....--+. +||+|+-
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v-~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v 106 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVV-EAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVV 106 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHH-HHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 345678899999998873 4456666666655553 23455688999873 45566555444444 8999986
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+-.+- ..+.+.+...-+.|.+ +.+.|+|+-
T Consensus 107 ~PyY~-k~~~~gl~~hf~~ia~---a~~lPvilY 136 (299)
T COG0329 107 PPYYN-KPSQEGLYAHFKAIAE---AVDLPVILY 136 (299)
T ss_pred CCCCc-CCChHHHHHHHHHHHH---hcCCCEEEE
Confidence 44331 1112344444444444 448998874
No 275
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=57.57 E-value=87 Score=32.73 Aligned_cols=93 Identities=22% Similarity=0.428 Sum_probs=60.3
Q ss_pred HhhhHHhHhcCCCEEEE-cCC-----------CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHH----hcHHHHHHh-
Q 007936 286 WLDIDFGITEGVDFIAI-SFV-----------KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSL----KNLEEIILA- 348 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~l-SfV-----------~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av----~NldeIl~~- 348 (584)
...+.-|...|+|||=+ .|+ -++.++.+.|+.| +.+++|++-|--+.+. .+++|+++.
T Consensus 92 ~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l-----~~~v~i~adV~~kh~~~l~~~~~~e~a~~~ 166 (257)
T TIGR00259 92 VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLL-----GSEVKILADIVVKHAVHLGNRDLESIALDT 166 (257)
T ss_pred HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHc-----CCCcEEEeceeecccCcCCCCCHHHHHHHH
Confidence 45677888999999988 555 3456666666666 4579999988554443 467887763
Q ss_pred -----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHH--cCCCeEEehh
Q 007936 349 -----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQ--LNKPVIVASQ 391 (584)
Q Consensus 349 -----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~--~gKPvivATq 391 (584)
+|||++.=--=|.+..++.+. .+++ -..|+++++-
T Consensus 167 ~~~~~aDavivtG~~TG~~~d~~~l~--------~vr~~~~~~PvllggG 208 (257)
T TIGR00259 167 VERGLADAVILSGKTTGTEVDLELLK--------LAKETVKDTPVLAGSG 208 (257)
T ss_pred HHhcCCCEEEECcCCCCCCCCHHHHH--------HHHhccCCCeEEEECC
Confidence 799999733333333333322 2222 2579999864
No 276
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=57.37 E-value=1.6e+02 Score=28.82 Aligned_cols=112 Identities=21% Similarity=0.301 Sum_probs=64.3
Q ss_pred HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEE--EeecCHHHHhcHHHHHHhCCEEEEeCC---cc---cc
Q 007936 290 DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVI--AKIESIDSLKNLEEIILASDGAMVARG---DL---GA 361 (584)
Q Consensus 290 ~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~Ii--AKIEt~~av~NldeIl~~sDGImIaRG---DL---g~ 361 (584)
+.+.+.++|+|=+..-++.+.+.++++.+ + ..+| ..+-+....+.....-..+|++++.-. +. |.
T Consensus 67 ~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~-----~--~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~ 139 (203)
T cd00405 67 EIAEELGLDVVQLHGDESPEYCAQLRARL-----G--LPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGK 139 (203)
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHhhc-----C--CcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcc
Confidence 45678899999999888888888888765 2 2233 445443333222222234799988542 11 23
Q ss_pred cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcc-cceEeecC--CCCCC
Q 007936 362 QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQR-ADALMLSG--ESAMG 430 (584)
Q Consensus 362 ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G-~D~imLs~--ETa~G 430 (584)
..+++.+..+ . ..+|+++|.-+ |. ..+..++..| +|++-+++ |++-|
T Consensus 140 ~~~~~~l~~~--------~-~~~PvilaGGI----------~~---~Nv~~~i~~~~~~gvdv~S~ie~~pg 189 (203)
T cd00405 140 TFDWSLLRGL--------A-SRKPVILAGGL----------TP---DNVAEAIRLVRPYGVDVSSGVETSPG 189 (203)
T ss_pred eEChHHhhcc--------c-cCCCEEEECCC----------Ch---HHHHHHHHhcCCCEEEcCCcccCCCC
Confidence 3343332211 1 57899998531 22 2345566666 77776654 44446
No 277
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=57.25 E-value=21 Score=38.70 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=41.8
Q ss_pred CCcccccccchHhhhcCCCCCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHH
Q 007936 83 SSSIEVDSVTEAELKENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRR 148 (584)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~ 148 (584)
+.+.++|++|..||...-.......+|+.| ||. .+.+.|+..++.|+ +||+-. .++.++
T Consensus 48 ~~G~g~DvaS~~El~~al~~G~~~~~Ii~~-gp~-K~~~~L~~ai~~gv---~i~iDS--~~El~~ 106 (379)
T cd06836 48 EAGAGAEVASPGELELALAAGFPPERIVFD-SPA-KTRAELREALELGV---AINIDN--FQELER 106 (379)
T ss_pred HcCCcEEEcCHHHHHHHHHcCCChhhEEEe-CCC-CCHHHHHHHHHCCC---EEEECC--HHHHHH
Confidence 456889999999998443333455679998 784 45889999999997 466543 554443
No 278
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=57.23 E-value=84 Score=33.49 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=75.3
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCC--EEEEeC-Cccccc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASD--GAMVAR-GDLGAQ 362 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sD--GImIaR-GDLg~e 362 (584)
....+...+.|+|+|-.|-+.++. .++...++.+ .+..+++ +..|++|-+.... .=||+. |+.|.-
T Consensus 86 ~~Ea~~L~~~GvDiID~Te~lrpa--d~~~~~~K~~---f~~~fma------d~~~l~EAlrai~~GadmI~Ttge~gtg 154 (293)
T PRK04180 86 FVEAQILEALGVDYIDESEVLTPA--DEEYHIDKWD---FTVPFVC------GARNLGEALRRIAEGAAMIRTKGEAGTG 154 (293)
T ss_pred HHHHHHHHHcCCCEEeccCCCCch--HHHHHHHHHH---cCCCEEc------cCCCHHHHHHHHHCCCCeeeccCCCCCc
Confidence 444555678999999999999993 3555555321 2467776 4455666665521 223321 221100
Q ss_pred -------------------CCC--CChHHH------HHHHHH-HHHHcCCCeE-EehhhhHhhhcCCCCChhhHHHHHHH
Q 007936 363 -------------------IPL--EQVPSA------QQKIVQ-LCRQLNKPVI-VASQLLESMIEYPTPTRAEVADVSEA 413 (584)
Q Consensus 363 -------------------i~~--e~V~~~------Qk~II~-~c~~~gKPvi-vATqmLeSMi~~p~PTrAEv~Dv~na 413 (584)
.++ +.+... --.+++ .++....||+ +| ....-|.+ |+..+
T Consensus 155 ~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~A--------eGGI~TPe---daa~v 223 (293)
T PRK04180 155 NVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFA--------AGGIATPA---DAALM 223 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEE--------eCCCCCHH---HHHHH
Confidence 011 111110 002233 3334468887 33 11222333 44667
Q ss_pred HHcccceEeecCCCCCCCChHHHHHHHHHHH
Q 007936 414 VRQRADALMLSGESAMGQFPDKALTVLRSVS 444 (584)
Q Consensus 414 v~~G~D~imLs~ETa~G~yPveaV~~m~~I~ 444 (584)
...|+|++++.+.-.....|.+.++.+....
T Consensus 224 me~GAdgVaVGSaI~ks~dP~~~akafv~ai 254 (293)
T PRK04180 224 MQLGADGVFVGSGIFKSGDPEKRARAIVEAT 254 (293)
T ss_pred HHhCCCEEEEcHHhhcCCCHHHHHHHHHHHH
Confidence 7789999999877766778988887765554
No 279
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=56.88 E-value=1.6e+02 Score=32.51 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=70.3
Q ss_pred ccCCCCCccCHhhh-HHhHhcCCCEEEEcCCC-CHHHHHHHHHHHHhhcCCCCceEEEeecCHH-HHhcHHHHHHh-CCE
Q 007936 276 AMLPTISPKDWLDI-DFGITEGVDFIAISFVK-SAEVINHLKSYIAARSRDSDIAVIAKIESID-SLKNLEEIILA-SDG 351 (584)
Q Consensus 276 ~~lp~lt~kD~~dI-~~al~~gvD~I~lSfV~-saedV~~lr~~l~~~~~~~~i~IiAKIEt~~-av~NldeIl~~-sDG 351 (584)
+-+..++..+..++ +.+++.|+++|-+.+-. +.+..+.++++.+. .+ ...|+.-+.... +-..++...++ +|+
T Consensus 8 ~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~--~~-~~~ii~D~kl~d~g~~~v~~a~~aGAdg 84 (430)
T PRK07028 8 VALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKN--FP-DHTIVADMKTMDTGAIEVEMAAKAGADI 84 (430)
T ss_pred EEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHH--CC-CCEEEEEeeeccchHHHHHHHHHcCCCE
Confidence 34444444444444 45588999999763311 24455566665532 11 234553322221 22356666666 799
Q ss_pred EEE-eCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 352 AMV-ARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 352 ImI-aRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
|.+ +-.| . ..-+.+++.|+++|.++++-. . ..+|.. ..+..+...|+|.+.+.
T Consensus 85 V~v~g~~~--------~--~~~~~~i~~a~~~G~~~~~g~------~--s~~t~~--e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 85 VCILGLAD--------D--STIEDAVRAARKYGVRLMADL------I--NVPDPV--KRAVELEELGVDYINVH 138 (430)
T ss_pred EEEecCCC--------h--HHHHHHHHHHHHcCCEEEEEe------c--CCCCHH--HHHHHHHhcCCCEEEEE
Confidence 886 3211 1 113678999999999998720 0 112322 33566777899999765
No 280
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=56.66 E-value=31 Score=34.58 Aligned_cols=77 Identities=23% Similarity=0.256 Sum_probs=49.5
Q ss_pred eEeeCCCEEEEeecc--cCCCC-CCCEEEecccchh--cccCCCCEEEEe--CCeeEEEEEEEeCCeEEEEEEcCceeCC
Q 007936 186 ARAEDGEIWTFTVRA--FDSPR-PERTITVNYDGFA--EDVKVGDELLVD--GGMVRFEVIEKIGPDVKCRCTDPGLLLP 258 (584)
Q Consensus 186 i~l~~G~~v~~t~~~--~~~~~-~~~~i~v~~~~~~--~~v~vGd~I~id--DG~i~l~V~~~~~~~i~c~v~~~G~l~s 258 (584)
.-++.|+++.++..+ -.+.- ++....++...|. ..+++|++++.+ +|.+.++|+++.++.|+.-- + -=..
T Consensus 50 ~G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~--N-HPLA 126 (196)
T PRK10737 50 EGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDG--N-HMLA 126 (196)
T ss_pred cCCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEEEC--C-CcCC
Confidence 346789999998763 22332 3334556666663 358999999885 78889999999988854322 1 1233
Q ss_pred Cceeeec
Q 007936 259 RANLTFW 265 (584)
Q Consensus 259 ~Kgvnf~ 265 (584)
.|.+.|.
T Consensus 127 G~~L~F~ 133 (196)
T PRK10737 127 GQNLKFN 133 (196)
T ss_pred CCEEEEE
Confidence 4556654
No 281
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=56.63 E-value=52 Score=34.82 Aligned_cols=129 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCe---
Q 007936 311 INHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPV--- 386 (584)
Q Consensus 311 V~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPv--- 386 (584)
...+..+++..-.+.+++|...+....-++.+.+-++. .+.||+. |-.+|+|+=...-+++++.|+.+|.+|
T Consensus 59 ~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaE 134 (283)
T PRK07998 59 YDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMID----GAALPFEENIAFTKEAVDFAKSYGVPVEAE 134 (283)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Q ss_pred -----EEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCC--hHHHHHHHHHHHHHH
Q 007936 387 -----IVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQF--PDKALTVLRSVSLRI 447 (584)
Q Consensus 387 -----ivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~y--PveaV~~m~~I~~~a 447 (584)
..-...... ....-+..|+.+..... |+|++-.+-=|+-|.| |---.+.|.+|....
T Consensus 135 lG~vgg~ed~~~~~--~~~~T~pe~a~~Fv~~T--gvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~ 198 (283)
T PRK07998 135 LGAILGKEDDHVSE--ADCKTEPEKVKDFVERT--GCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS 198 (283)
T ss_pred eccCCCcccccccc--ccccCCHHHHHHHHHHh--CcCeeehhccccccCCCCCCcCHHHHHHHHhhC
No 282
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=56.59 E-value=1.3e+02 Score=31.33 Aligned_cols=122 Identities=11% Similarity=0.143 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCC-hHHHHHHHHHHHHHHhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQF-PDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~y-PveaV~~m~~I~~~aE~~~~ 452 (584)
-+...|+.+|.|+.+. .|..+....+...-..|++.+..-++ | -.++++...++.++-..|
T Consensus 72 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~~-----~~~~~~~~~a~~~~~~~~~~-- 133 (299)
T TIGR01136 72 ALAMVAAAKGYKLILT-----------MPETMSLERRKLLRAYGAELILTPAE-----EGMKGAIDKAEELAAETNKY-- 133 (299)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC-----CChHHHHHHHHHHHhhCCCe--
Confidence 4556899999998876 45555555566677789998776432 2 134444444333211011
Q ss_pred hhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHHHHH----hccCCCCcEEEEcCch
Q 007936 453 EEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMASLL----SRCRPDCPIFAFTSTT 522 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~l----Sr~RP~~PIiavT~~~ 522 (584)
+..++... +..+.......+.|+.++++ .+.||+.+-+|.++.-+ ..++|...|+++.+..
T Consensus 134 -------~~~~~~~~--~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~ 200 (299)
T TIGR01136 134 -------VMLDQFEN--PANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAE 200 (299)
T ss_pred -------EecCCCCC--chhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 11111111 11112223455667788774 89999999999988544 4567999999999864
No 283
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=56.56 E-value=2.6e+02 Score=30.58 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=57.5
Q ss_pred cCHh-hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHH-----------hcHHHHHHh-CC
Q 007936 284 KDWL-DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSL-----------KNLEEIILA-SD 350 (584)
Q Consensus 284 kD~~-dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av-----------~NldeIl~~-sD 350 (584)
.|.+ .++.+.+.|+|.++++ .-.++.+. .....++.+|.|+-+...+ -..+|-++. +|
T Consensus 91 ~dp~~~i~~a~~~g~dAv~~~-------~G~l~~~~--~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAd 161 (348)
T PRK09250 91 FDPENIVKLAIEAGCNAVAST-------LGVLEAVA--RKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAV 161 (348)
T ss_pred cCHHHHHHHHHhcCCCEEEeC-------HHHHHhcc--ccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCC
Confidence 3444 4567788899999998 23333322 1223457799998765444 246777766 78
Q ss_pred EEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 351 GAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 351 GImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+|-+- -.+|-+.- .+...--.+++..|.+.|.|++..
T Consensus 162 AV~~t-vy~Gs~~E-~~ml~~l~~i~~ea~~~GlPlv~~ 198 (348)
T PRK09250 162 AVGAT-IYFGSEES-RRQIEEISEAFEEAHELGLATVLW 198 (348)
T ss_pred EEEEE-EecCCHHH-HHHHHHHHHHHHHHHHhCCCEEEE
Confidence 66542 11111110 134444568899999999999873
No 284
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=56.29 E-value=28 Score=36.57 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=42.5
Q ss_pred HhhhHHhHhcCCCEEEEcC---------CCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEE
Q 007936 286 WLDIDFGITEGVDFIAISF---------VKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGA 352 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSf---------V~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGI 352 (584)
.++.+.+.+.|+|+|.++- .-+.+-+.++++.+ +.++.||+- -|+.+-.+++++ +|++
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-----~~~ipvia~----GGI~~~~d~~kal~lGAd~V 253 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAV-----GGRIEVLLD----GGIRRGTDVLKALALGADAV 253 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh-----cCCCeEEEe----CCCCCHHHHHHHHHcCCCEE
Confidence 4667888999999999964 22344445554444 224677762 567777777766 7999
Q ss_pred EEeCC
Q 007936 353 MVARG 357 (584)
Q Consensus 353 mIaRG 357 (584)
|+||.
T Consensus 254 ~ig~~ 258 (299)
T cd02809 254 LIGRP 258 (299)
T ss_pred EEcHH
Confidence 99983
No 285
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=56.06 E-value=63 Score=35.38 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHc
Q 007936 307 SAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQL 382 (584)
Q Consensus 307 saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~ 382 (584)
+-++|+.+|+.. ..++|.| + +-+.++...+ +|||.|+=. =|-+ ++..+..-..+.+.+...
T Consensus 224 ~w~~i~~ir~~~-------~~pviiK-g----V~~~eda~~a~~~G~d~I~VSnh-GGrq--ld~~~~~~~~L~ei~~~~ 288 (361)
T cd04736 224 NWQDLRWLRDLW-------PHKLLVK-G----IVTAEDAKRCIELGADGVILSNH-GGRQ--LDDAIAPIEALAEIVAAT 288 (361)
T ss_pred CHHHHHHHHHhC-------CCCEEEe-c----CCCHHHHHHHHHCCcCEEEECCC-CcCC--CcCCccHHHHHHHHHHHh
Confidence 456777777765 1345554 2 2344444433 788887411 0111 122222233333334445
Q ss_pred CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecC
Q 007936 383 NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSG 425 (584)
Q Consensus 383 gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ 425 (584)
+.|||+...+ - --.||..|+..|+|++|+..
T Consensus 289 ~~~vi~dGGI---------r---~g~Dv~KALaLGA~aV~iGr 319 (361)
T cd04736 289 YKPVLIDSGI---------R---RGSDIVKALALGANAVLLGR 319 (361)
T ss_pred CCeEEEeCCC---------C---CHHHHHHHHHcCCCEEEECH
Confidence 7898875322 1 24799999999999999853
No 286
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=56.04 E-value=2e+02 Score=30.01 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=83.5
Q ss_pred CCCccCHhhhHHhHhcCCCEEEEcCC-------------CCHHH-HHHHHHHHHhhcCCCCceEEEeec-------CHHH
Q 007936 280 TISPKDWLDIDFGITEGVDFIAISFV-------------KSAEV-INHLKSYIAARSRDSDIAVIAKIE-------SIDS 338 (584)
Q Consensus 280 ~lt~kD~~dI~~al~~gvD~I~lSfV-------------~saed-V~~lr~~l~~~~~~~~i~IiAKIE-------t~~a 338 (584)
-++-+|..-.+.+-+.|+|.|....- -+-++ +..++... +.. ....|++=++ -.++
T Consensus 16 ~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~--r~~-~~p~viaD~~fg~y~~~~~~a 92 (254)
T cd06557 16 MLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVR--RGA-PRALVVADMPFGSYQTSPEQA 92 (254)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHH--hcC-CCCeEEEeCCCCcccCCHHHH
Confidence 34678888778888889999875411 01222 23333333 222 2244888775 2344
Q ss_pred HhcHHHHHH-h-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe----hhhhHhh----hcCCCCChhh--
Q 007936 339 LKNLEEIIL-A-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA----SQLLESM----IEYPTPTRAE-- 406 (584)
Q Consensus 339 v~NldeIl~-~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA----TqmLeSM----i~~p~PTrAE-- 406 (584)
++|.-.+++ + ++||.|-=| ..+...|+++.++|+||+-. -|--..+ +..-...+++
T Consensus 93 v~~a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~ 160 (254)
T cd06557 93 LRNAARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERL 160 (254)
T ss_pred HHHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHH
Confidence 777777776 4 789998544 25677888999999998821 1111111 1111122222
Q ss_pred HHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHh
Q 007936 407 VADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIE 448 (584)
Q Consensus 407 v~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE 448 (584)
+.+.......|+|+++|-+= |. +.++.|+++..
T Consensus 161 i~ra~a~~~AGA~~i~lE~v------~~---~~~~~i~~~v~ 193 (254)
T cd06557 161 LEDALALEEAGAFALVLECV------PA---ELAKEITEALS 193 (254)
T ss_pred HHHHHHHHHCCCCEEEEcCC------CH---HHHHHHHHhCC
Confidence 35555577899999999522 32 35666665543
No 287
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=55.89 E-value=2.9e+02 Score=29.94 Aligned_cols=106 Identities=12% Similarity=0.172 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeE
Q 007936 308 AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVI 387 (584)
Q Consensus 308 aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvi 387 (584)
.+.++.++++.+ + ..+.+++-+-..+.++-+.+ .+|.+-||-.++ -+..+++.+-+.||||+
T Consensus 143 ~~gL~~L~~~~~--~--~Gl~v~tev~d~~~~~~l~~---~vd~lqIgAr~~-----------~N~~LL~~va~~~kPVi 204 (335)
T PRK08673 143 EEGLKLLAEARE--E--TGLPIVTEVMDPRDVELVAE---YVDILQIGARNM-----------QNFDLLKEVGKTNKPVL 204 (335)
T ss_pred HHHHHHHHHHHH--H--cCCcEEEeeCCHHHHHHHHH---hCCeEEECcccc-----------cCHHHHHHHHcCCCcEE
Confidence 455666666663 2 34788898877777666654 479999986665 23456777788999999
Q ss_pred EehhhhHhhhcCCCCChhhHHHHHHHHH-cccceEeecC--CCCCCCChHHHHHH
Q 007936 388 VASQLLESMIEYPTPTRAEVADVSEAVR-QRADALMLSG--ESAMGQFPDKALTV 439 (584)
Q Consensus 388 vATqmLeSMi~~p~PTrAEv~Dv~nav~-~G~D~imLs~--ETa~G~yPveaV~~ 439 (584)
+.|.|. .|-.|+-..+..+. .|.+-++|.- =+..-.||-+.+.+
T Consensus 205 Lk~G~~--------~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl 251 (335)
T PRK08673 205 LKRGMS--------ATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDL 251 (335)
T ss_pred EeCCCC--------CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhH
Confidence 987544 45567776676664 6776666653 33444677777654
No 288
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.61 E-value=1.1e+02 Score=31.87 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=70.8
Q ss_pred hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEE--EeCCcccccCCC
Q 007936 288 DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAM--VARGDLGAQIPL 365 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGIm--IaRGDLg~ei~~ 365 (584)
-++.+.+.|+|++++|=.- .++..++++.++. . .+..|.-+=.----+.+..|.+.++|.+ +++ .|+ .|.
T Consensus 109 f~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~--~--gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~ 180 (258)
T PRK13111 109 FAADAAEAGVDGLIIPDLP-PEEAEELRAAAKK--H--GLDLIFLVAPTTTDERLKKIASHASGFVYYVSR--AGV-TGA 180 (258)
T ss_pred HHHHHHHcCCcEEEECCCC-HHHHHHHHHHHHH--c--CCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCc
Confidence 3567788999999998664 4677777777742 2 2444443422223456888898888765 444 332 222
Q ss_pred -CChHHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 366 -EQVPSAQQKIVQLCRQL-NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 366 -e~V~~~Qk~II~~c~~~-gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
...+.-....++.++++ ++|+++-. ..=++.++ ..+.. ++|++...
T Consensus 181 ~~~~~~~~~~~i~~vk~~~~~pv~vGf---------GI~~~e~v---~~~~~-~ADGviVG 228 (258)
T PRK13111 181 RSADAADLAELVARLKAHTDLPVAVGF---------GISTPEQA---AAIAA-VADGVIVG 228 (258)
T ss_pred ccCCCccHHHHHHHHHhcCCCcEEEEc---------ccCCHHHH---HHHHH-hCCEEEEc
Confidence 23344455666666665 89999863 33444444 44443 58998875
No 289
>PRK09224 threonine dehydratase; Reviewed
Probab=55.44 E-value=1.2e+02 Score=34.51 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 373 QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 373 k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
.-+...|++.|.|+.+- .|..+....+...-..|++.++.. ...-++.+...++.++ +.++
T Consensus 81 ~avA~aa~~lGi~~~Iv-----------mP~~tp~~K~~~~r~~GA~Vi~~g------~~~~~a~~~a~~l~~~-~g~~- 141 (504)
T PRK09224 81 QGVALSAARLGIKAVIV-----------MPVTTPDIKVDAVRAFGGEVVLHG------DSFDEAYAHAIELAEE-EGLT- 141 (504)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHh-cCCE-
Confidence 45667899999998875 233333334455567899877653 2345666665555433 2111
Q ss_pred hhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHHHHH----hccCCCCcEEEEcCch
Q 007936 453 EEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMASLL----SRCRPDCPIFAFTSTT 522 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~l----Sr~RP~~PIiavT~~~ 522 (584)
..++... + .....-..-+.++.++++ .++||+..-+|.++.-+ ..++|...||+|-+..
T Consensus 142 --------~v~~f~~--~-~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~ 206 (504)
T PRK09224 142 --------FIHPFDD--P-DVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPED 206 (504)
T ss_pred --------EeCCCCC--c-HHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1111111 1 222333444677777774 69999999999777554 4578999999998753
No 290
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=54.82 E-value=1.8e+02 Score=29.45 Aligned_cols=130 Identities=12% Similarity=0.138 Sum_probs=73.7
Q ss_pred cCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHH-------HhcHHHHHH----hCCEE
Q 007936 284 KDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDS-------LKNLEEIIL----ASDGA 352 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~a-------v~NldeIl~----~sDGI 352 (584)
.+.+|++..++.|++.|++.-. ...+ .-+++.++. .+.+ .++.-|....+ ..++.+.++ .++.+
T Consensus 88 r~~edv~~~l~~Ga~~viigt~-~~~~-~~~~~~~~~--~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 162 (233)
T cd04723 88 RSLENAQEWLKRGASRVIVGTE-TLPS-DDDEDRLAA--LGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEEL 162 (233)
T ss_pred CCHHHHHHHHHcCCCeEEEcce-eccc-hHHHHHHHh--cCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeE
Confidence 3478899999999999888653 3444 555555532 2221 45666655443 122333333 35777
Q ss_pred EEeCCcccccCCCC--ChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCC
Q 007936 353 MVARGDLGAQIPLE--QVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMG 430 (584)
Q Consensus 353 mIaRGDLg~ei~~e--~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G 430 (584)
++. |+..+-... .+ +.+-+.++..+.|++++.- .=+. .|+..+...|+|++++..==-.|
T Consensus 163 i~~--di~~~G~~~g~~~----~~~~~i~~~~~ipvi~~GG---------i~s~---edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 163 IVL--DIDRVGSGQGPDL----ELLERLAARADIPVIAAGG---------VRSV---EDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred EEE--EcCccccCCCcCH----HHHHHHHHhcCCCEEEeCC---------CCCH---HHHHHHHHcCCCEEEEehHHHcC
Confidence 764 333222111 11 1222334556899998843 3344 45566666799999997555556
Q ss_pred CChHHH
Q 007936 431 QFPDKA 436 (584)
Q Consensus 431 ~yPvea 436 (584)
+++.+.
T Consensus 225 ~~~~~~ 230 (233)
T cd04723 225 GLTLED 230 (233)
T ss_pred CCCHHH
Confidence 666543
No 291
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=54.82 E-value=1.6e+02 Score=28.34 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=67.7
Q ss_pred hhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHH-hCCEEEEeCCccccc---C
Q 007936 288 DIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIIL-ASDGAMVARGDLGAQ---I 363 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~-~sDGImIaRGDLg~e---i 363 (584)
+++.+.+.|+|+|-++.= .-+...+|..+ +....|-+-+-|.+- +.+..+ -+|.+++++=.=... .
T Consensus 65 ~~~la~~~g~~GvHl~~~--~~~~~~~r~~~-----~~~~~ig~s~h~~~e---~~~a~~~g~dyi~~~~v~~t~~k~~~ 134 (196)
T TIGR00693 65 RVDLALALGADGVHLGQD--DLPASEARALL-----GPDKIIGVSTHNLEE---LAEAEAEGADYIGFGPIFPTPTKKDP 134 (196)
T ss_pred HHHHHHHcCCCEEecCcc--cCCHHHHHHhc-----CCCCEEEEeCCCHHH---HHHHhHcCCCEEEECCccCCCCCCCC
Confidence 356788999999998742 22345555555 223344444444322 223332 279999875311100 0
Q ss_pred -CCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHH
Q 007936 364 -PLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTV 439 (584)
Q Consensus 364 -~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~ 439 (584)
+... +...+++.+.+ .++|++..-.+ +. .++..+...|+|++.+.+.-.--..|.++++.
T Consensus 135 ~~~~g-~~~l~~~~~~~--~~~pv~a~GGI----------~~---~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~ 195 (196)
T TIGR00693 135 APPAG-VELLREIAATS--IDIPIVAIGGI----------TL---ENAAEVLAAGADGVAVVSAIMQAADPKAAAKQ 195 (196)
T ss_pred CCCCC-HHHHHHHHHhc--CCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHh
Confidence 1111 12223333322 24898876322 22 44566677899999998776655667777653
No 292
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=54.77 E-value=24 Score=37.91 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=41.4
Q ss_pred eEEEecCCCCCCHHHHHHHHHhc--CCEEEEeCCCCCHHHHHHHHHHHHH
Q 007936 108 KLVCTIGPATCGFEQLEALAVGG--MNVARINMCHGTREWHRRVIERVRR 155 (584)
Q Consensus 108 KIi~TiGPa~~~~e~l~~li~~G--m~v~RiN~sHg~~e~~~~~i~~ir~ 155 (584)
-..+++|-...+.|.+..|+++| .|+.=+..+||..+...+.++++|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 46777777777789999999999 6999999999998888888888876
No 293
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=54.57 E-value=26 Score=30.04 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCCcEEEEccCC---------chHHHHHhccCCCCcEEEE
Q 007936 477 ICNSAAKMANNLEVDALFVYTKT---------GHMASLLSRCRPDCPIFAF 518 (584)
Q Consensus 477 ia~sav~~A~~l~a~aIvv~T~s---------G~tA~~lSr~RP~~PIiav 518 (584)
.+...++.+.+.++++||+-++. |+++..+.+.-| |||+.+
T Consensus 90 ~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 90 VADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred cchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 45666888899999999998887 788888888655 899875
No 294
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=54.43 E-value=1.3e+02 Score=33.19 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+++|.++.+- .|..+....+...-..|++.+...+... ...+...++...++.++.+.+
T Consensus 76 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~~~~~-~~~~~~~~~~a~~l~~~~~~~--- 140 (454)
T TIGR01137 76 GLALVAAIKGYKCIIV-----------LPEKMSNEKVDVLKALGAEIVRTPTAAA-FDSPESHIGVAKRLVREIPGA--- 140 (454)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCcCHHHHHHHHHCCCEEEEcCCccC-CCchHHHHHHHHHHHHhCCCc---
Confidence 4566899999999885 3444433455556678999877643211 112222233333433322111
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHHHHHhc----cCCCCcEEEEcCch
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMASLLSR----CRPDCPIFAFTSTT 522 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~lSr----~RP~~PIiavT~~~ 522 (584)
+...+... +..+.......+.|+.++++ .++||+..-+|.|+.-+++ ++|.+.|+++.+..
T Consensus 141 ------~~~~~~~~--~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~ 207 (454)
T TIGR01137 141 ------HILDQYNN--PSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEG 207 (454)
T ss_pred ------EecccCCC--hhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCC
Confidence 11111111 11121123445667777764 7999999999998876554 57999999998854
No 295
>PRK15005 universal stress protein F; Provisional
Probab=54.32 E-value=24 Score=31.80 Aligned_cols=39 Identities=15% Similarity=0.410 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCcEEEEccCC--------chHHHHHhccCCCCcEEEE
Q 007936 479 NSAAKMANNLEVDALFVYTKT--------GHMASLLSRCRPDCPIFAF 518 (584)
Q Consensus 479 ~sav~~A~~l~a~aIvv~T~s--------G~tA~~lSr~RP~~PIiav 518 (584)
...++.|.+.++++||+-|+. |+++..+.+.-| |||+.+
T Consensus 97 ~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~-cpVlvV 143 (144)
T PRK15005 97 DRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAE-CSVLVV 143 (144)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCC-CCEEEe
Confidence 445677889999999998774 567777766544 999875
No 296
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.24 E-value=66 Score=32.79 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=64.1
Q ss_pred EEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCc--------ccccCCCC-
Q 007936 300 IAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGD--------LGAQIPLE- 366 (584)
Q Consensus 300 I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGD--------Lg~ei~~e- 366 (584)
|.+=...++++..++-+.+.+.+. ..+=.-.-|+.+++.++++.+. .+.++||=|= ..++.|.+
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~gGi---~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~F 94 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYDGGA---RVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANF 94 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCC---CEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCE
Confidence 444445666776666666632211 1222334566677777666532 2446666551 11111111
Q ss_pred -ChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 367 -QVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 367 -~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
--|..-..+++.|+++|.|++ |--.=.+++..|...|+|.+=|=
T Consensus 95 iVsP~~~~~v~~~~~~~~i~~i--------------PG~~TpsEi~~A~~~Ga~~vKlF 139 (222)
T PRK07114 95 IVTPLFNPDIAKVCNRRKVPYS--------------PGCGSLSEIGYAEELGCEIVKLF 139 (222)
T ss_pred EECCCCCHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEEC
Confidence 123345789999999999988 33344567789999999998875
No 297
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=53.96 E-value=1.6e+02 Score=31.98 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=74.8
Q ss_pred hHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCcccccCC
Q 007936 289 IDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGDLGAQIP 364 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGDLg~ei~ 364 (584)
++.|+..|+|+|-++.=. -.+..+|..+ +.+..|-+ +..|++|+.++ +|.|.+|+---+..=|
T Consensus 210 vdlAl~~~aDGVHLgq~d--l~~~~aR~ll-----g~~~iIG~------S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp 276 (347)
T PRK02615 210 VDIALAVDADGVHLGQED--LPLAVARQLL-----GPEKIIGR------STTNPEEMAKAIAEGADYIGVGPVFPTPTKP 276 (347)
T ss_pred HHHHHHcCCCEEEeChhh--cCHHHHHHhc-----CCCCEEEE------ecCCHHHHHHHHHcCCCEEEECCCcCCCCCC
Confidence 456788999999998521 1245666655 22223333 23455555554 7999998754332111
Q ss_pred CCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHH
Q 007936 365 LEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVS 444 (584)
Q Consensus 365 ~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~ 444 (584)
... +.--+.+-..+.....||+.--. . +. .++......|+|+|.+.+.-.-...|.++++.+....
T Consensus 277 ~~~-~~Gle~l~~~~~~~~iPv~AiGG---------I-~~---~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l 342 (347)
T PRK02615 277 GKA-PAGLEYLKYAAKEAPIPWFAIGG---------I-DK---SNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQL 342 (347)
T ss_pred CCC-CCCHHHHHHHHHhCCCCEEEECC---------C-CH---HHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 111 11112222334456788775321 1 22 2445566779999999887766678998888776654
Q ss_pred H
Q 007936 445 L 445 (584)
Q Consensus 445 ~ 445 (584)
.
T Consensus 343 ~ 343 (347)
T PRK02615 343 S 343 (347)
T ss_pred h
Confidence 3
No 298
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=53.81 E-value=30 Score=37.62 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=44.5
Q ss_pred CHhhhHHhHhcCCCEEEEcCC------CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEE
Q 007936 285 DWLDIDFGITEGVDFIAISFV------KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMV 354 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV------~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImI 354 (584)
..+|.+.+.+.|+|+|.+|.- ..+..+..+.++.+ ..+.++.||+- -|+.+-.+|+++ +|++||
T Consensus 231 ~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~--a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~i 304 (351)
T cd04737 231 SPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAE--AVNHRVPIIFD----SGVRRGEHVFKALASGADAVAV 304 (351)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHH--HhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEE
Confidence 347788999999999999731 12223333333321 12335777763 567777777766 899999
Q ss_pred eCCcc
Q 007936 355 ARGDL 359 (584)
Q Consensus 355 aRGDL 359 (584)
||.=|
T Consensus 305 Gr~~l 309 (351)
T cd04737 305 GRPVL 309 (351)
T ss_pred CHHHH
Confidence 99654
No 299
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.75 E-value=11 Score=39.23 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=32.5
Q ss_pred hcCCcEEEEccCCchHHHHHhc----cCCCCcEEEEcCch
Q 007936 487 NLEVDALFVYTKTGHMASLLSR----CRPDCPIFAFTSTT 522 (584)
Q Consensus 487 ~l~a~aIvv~T~sG~tA~~lSr----~RP~~PIiavT~~~ 522 (584)
+..+|.++|-|.+|+||..+|. ..|.++.+.+||=.
T Consensus 145 ~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~ 184 (265)
T PRK04885 145 RFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIA 184 (265)
T ss_pred EEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeec
Confidence 4588999999999999999998 77899999999865
No 300
>PRK10717 cysteine synthase A; Provisional
Probab=53.64 E-value=1.7e+02 Score=31.01 Aligned_cols=130 Identities=9% Similarity=0.061 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+.+|.|+.+- .|..+.-.-+...-..|++.+...+. . ...|-..++...++..+.+....
T Consensus 78 alA~~a~~~G~~~~vv-----------~p~~~~~~k~~~~~~~GA~V~~~~~~-~-~~~~~~~~~~a~~~a~~~~~~~~- 143 (330)
T PRK10717 78 GLALVAAARGYKTVIV-----------MPETQSQEKKDLLRALGAELVLVPAA-P-YANPNNYVKGAGRLAEELVASEP- 143 (330)
T ss_pred HHHHHHHHcCCcEEEE-----------eCCCCCHHHHHHHHHcCCEEEEeCCc-c-cccccchHHHHHHHHHHHHhhCC-
Confidence 4556899999999886 24333333455666789998777532 1 11122234444444444322100
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHHHHHh----ccCCCCcEEEEcCch
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTT 522 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~ 522 (584)
...+...+.. .+.....-...-+.|+.++++ .++||+..-+|.++.-++ .++|.+.|+++-+..
T Consensus 144 ---~~~~~~~~~~--~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~ 213 (330)
T PRK10717 144 ---NGAIWANQFD--NPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTG 213 (330)
T ss_pred ---CCeEecCCCC--ChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 0111111111 111111223455677777775 799999999999876554 457999999998853
No 301
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=53.20 E-value=2.3e+02 Score=30.19 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=74.0
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCC--EEEEeC-Cccccc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASD--GAMVAR-GDLGAQ 362 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sD--GImIaR-GDLg~e 362 (584)
....+...+.|+|+|-.|.+.++ ..++-...+.+ .+.++++ +..||+|-+...+ .=||+. |.-+..
T Consensus 79 ~~Ea~~L~~~GvDiIDeTe~lrP--ade~~~~~K~~---f~vpfma------d~~~l~EAlrai~~GadmI~Tt~e~gTg 147 (287)
T TIGR00343 79 FVEAQILEALGVDYIDESEVLTP--ADWTFHIDKKK---FKVPFVC------GARDLGEALRRINEGAAMIRTKGEAGTG 147 (287)
T ss_pred HHHHHHHHHcCCCEEEccCCCCc--HHHHHHHHHHH---cCCCEEc------cCCCHHHHHHHHHCCCCEEeccccCCCc
Confidence 45556667899999999999998 34554545321 2456666 3455666555421 222221 110000
Q ss_pred C----------------------CCCChHHHH------HHHHH-HHHHcCCCeE-EehhhhHhhhcCCCCChhhHHHHHH
Q 007936 363 I----------------------PLEQVPSAQ------QKIVQ-LCRQLNKPVI-VASQLLESMIEYPTPTRAEVADVSE 412 (584)
Q Consensus 363 i----------------------~~e~V~~~Q------k~II~-~c~~~gKPvi-vATqmLeSMi~~p~PTrAEv~Dv~n 412 (584)
- .-+++..+- -..++ .++..+.||+ +| ....-|.+ |+..
T Consensus 148 ~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fA--------iGGI~TPe---dAa~ 216 (287)
T TIGR00343 148 NIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFA--------AGGVATPA---DAAL 216 (287)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEec--------cCCCCCHH---HHHH
Confidence 0 000000000 01222 2333467877 33 12222333 4567
Q ss_pred HHHcccceEeecCCCCCCCChHHHHHHHHHHHH
Q 007936 413 AVRQRADALMLSGESAMGQFPDKALTVLRSVSL 445 (584)
Q Consensus 413 av~~G~D~imLs~ETa~G~yPveaV~~m~~I~~ 445 (584)
++..|+|+++..+.-.....|.+..+.+.....
T Consensus 217 ~melGAdGVaVGSaI~ks~dP~~~akafv~ai~ 249 (287)
T TIGR00343 217 MMQLGADGVFVGSGIFKSSNPEKLAKAIVEATT 249 (287)
T ss_pred HHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 778899999998776666789988887665543
No 302
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=53.11 E-value=54 Score=35.63 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=54.0
Q ss_pred HhcHHHHHHh-CCEEEEeCCcccccCCCC--ChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhh--HHHHHHH
Q 007936 339 LKNLEEIILA-SDGAMVARGDLGAQIPLE--QVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAE--VADVSEA 413 (584)
Q Consensus 339 v~NldeIl~~-sDGImIaRGDLg~ei~~e--~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAE--v~Dv~na 413 (584)
++.+...++. +|+|.+|=-+++.--... .... .+++++.|+++||-++++..++ +.+..-| ...+..+
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~------~~~~~~~~~~~~l~~l 88 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTL------LHNDELETLERYLDRL 88 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEeccc------cccchhhHHHHHHHHH
Confidence 4444444444 899999955676665541 2222 5789999999999999987654 2222222 3556678
Q ss_pred HHcccceEeec
Q 007936 414 VRQRADALMLS 424 (584)
Q Consensus 414 v~~G~D~imLs 424 (584)
+..|+|++.++
T Consensus 89 ~e~GvDaviv~ 99 (347)
T COG0826 89 VELGVDAVIVA 99 (347)
T ss_pred HHcCCCEEEEc
Confidence 89999999997
No 303
>PRK06382 threonine dehydratase; Provisional
Probab=53.08 E-value=1.6e+02 Score=32.27 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=73.7
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhh
Q 007936 375 IVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREE 454 (584)
Q Consensus 375 II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 454 (584)
+...|+.+|.|+.+. .|..+-...+...-..|++-+. .++ ..-++.+...++.++- .++
T Consensus 88 ~A~aa~~~G~~~~iv-----------mp~~~~~~k~~~~~~~GA~Vv~-~~~-----~~~~a~~~a~~la~~~-~~~--- 146 (406)
T PRK06382 88 VAYAASINGIDAKIV-----------MPEYTIPQKVNAVEAYGAHVIL-TGR-----DYDEAHRYADKIAMDE-NRT--- 146 (406)
T ss_pred HHHHHHHcCCCEEEE-----------EcCCCHHHHHHHHHHcCCEEEE-ECC-----CHHHHHHHHHHHHHhc-CCE---
Confidence 567899999999886 3444433444445568998764 332 2455665555554321 111
Q ss_pred hhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhc-CCcEEEEccCCchHHHHHhcc----CCCCcEEEEcCchh
Q 007936 455 KRHEAMELPDVGSSFAESISEEICNSAAKMANNL-EVDALFVYTKTGHMASLLSRC----RPDCPIFAFTSTTS 523 (584)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l-~a~aIvv~T~sG~tA~~lSr~----RP~~PIiavT~~~~ 523 (584)
..++... + ...+....-+.|+.+++ ..++||+..-+|.++.-++++ .|.+.|+++-+...
T Consensus 147 ------~v~~~~~--~-~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~ 211 (406)
T PRK06382 147 ------FIEAFND--R-WVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELS 211 (406)
T ss_pred ------ecCccCC--h-HHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1111111 1 22233445567777776 479999999999988766554 79999999998643
No 304
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.98 E-value=58 Score=34.27 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=48.4
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEe--ecCHHHHhcHHHHHHh-CCEEEEeC
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAK--IESIDSLKNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAK--IEt~~av~NldeIl~~-sDGImIaR 356 (584)
+-...+++..+++.|+|+|.+.. -+.++++++.+.+. .++++.|- | -.+|+.++++. +|+|-+|.
T Consensus 195 Ev~tleea~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~-----~~i~leAsGGI----t~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 195 EVESLDELRQALAAGADIVMLDE-LSLDDMREAVRLTA-----GRAKLEASGGI----NESTLRVIAETGVDYISIGA 262 (277)
T ss_pred EeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhC-----CCCcEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 33557888899999999999976 58888888887662 23554442 3 24688888888 89999874
No 305
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=52.80 E-value=92 Score=32.28 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=58.3
Q ss_pred HhhhHHhHhcCCCEEEEc------CCCCHHHHHHHHHHHHhhcCCCCceEEEeecC---HHHHhcHHHHHHh-CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAIS------FVKSAEVINHLKSYIAARSRDSDIAVIAKIES---IDSLKNLEEIILA-SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lS------fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt---~~av~NldeIl~~-sDGImIa 355 (584)
.+.+++.++.|+|+|++. +-=|.++=.++-+... ...+.++.||+-+-. .++++.....-+. +||+|+.
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~-~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~ 103 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVV-EAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVI 103 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHH-HHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHH-HHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEe
Confidence 455678899999999884 2334444444444442 223456889998853 5555555554444 7999987
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+-.+.. ...+++. +..-..|.+.+.|+++-
T Consensus 104 ~P~~~~-~s~~~l~---~y~~~ia~~~~~pi~iY 133 (289)
T PF00701_consen 104 PPYYFK-PSQEELI---DYFRAIADATDLPIIIY 133 (289)
T ss_dssp ESTSSS-CCHHHHH---HHHHHHHHHSSSEEEEE
T ss_pred cccccc-chhhHHH---HHHHHHHhhcCCCEEEE
Confidence 544321 2223333 34444456678998875
No 306
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=52.77 E-value=84 Score=33.17 Aligned_cols=113 Identities=23% Similarity=0.357 Sum_probs=67.0
Q ss_pred HhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHH
Q 007936 291 FGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPS 370 (584)
Q Consensus 291 ~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~ 370 (584)
-++..|+|.+-+ |.+ .+...-+|.|. .+..+-.-.-...+++-++..+.-.+++.||+| ||- -+-+..
T Consensus 52 sa~~~GaDL~Hi-FCe-~~Aa~vIKsYs------PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGR---dp~~~k 119 (306)
T KOG3974|consen 52 SALRVGADLSHI-FCE-PEAAVVIKSYS------PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGR---DPAILK 119 (306)
T ss_pred HHHHhccceeee-eec-hhHHHHHhhcC------CceeecccccCCchHhHHHHHHhheeEEEECCC-CCC---CHHHHH
Confidence 356678885332 222 12222333333 334444444455688888888888999999987 433 134666
Q ss_pred HHHHHHHHHHHcCCCeEE-------ehhhhHhhhcCC-----CCChhhHHHHHHHHH
Q 007936 371 AQQKIVQLCRQLNKPVIV-------ASQLLESMIEYP-----TPTRAEVADVSEAVR 415 (584)
Q Consensus 371 ~Qk~II~~c~~~gKPviv-------ATqmLeSMi~~p-----~PTrAEv~Dv~nav~ 415 (584)
..+.|++.|+..++|+.+ .+|-.|-|+..- +|.--|-..+..++.
T Consensus 120 ~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~~l 176 (306)
T KOG3974|consen 120 EIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDAEL 176 (306)
T ss_pred HHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHHhh
Confidence 677899999999999765 344444333221 455555555555544
No 307
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=52.69 E-value=1.8e+02 Score=30.21 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCCh-HHHHHHHHHHHHHHhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFP-DKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yP-veaV~~m~~I~~~aE~~~~ 452 (584)
-+...|+++|.|+.+. .|....-..+...-..|++.+..-+ .|. .++++..+++..+-..+
T Consensus 71 alA~~a~~~Gl~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~-- 132 (298)
T TIGR01139 71 ALAMVAAARGYKLILT-----------MPETMSIERRKLLKAYGAELVLTPG-----AEGMKGAIAKAEEIAASTPNS-- 132 (298)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCccCHHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHhCCCc--
Confidence 4456889999999886 3443333334555678999886643 342 35555444433221100
Q ss_pred hhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHHHH----HhccCCCCcEEEEcCch
Q 007936 453 EEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMASL----LSRCRPDCPIFAFTSTT 522 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~----lSr~RP~~PIiavT~~~ 522 (584)
.+...+.. .+..+.......+-|+.++++ .+.||+.+-+|.++.- +..++|.+.|++|-+..
T Consensus 133 ------~~~~~~~~--n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 200 (298)
T TIGR01139 133 ------YFMLQQFE--NPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAE 200 (298)
T ss_pred ------EEcccccC--CcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCC
Confidence 01111111 111122223344556666664 7999999999988754 44567999999999864
No 308
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=52.40 E-value=48 Score=33.89 Aligned_cols=86 Identities=17% Similarity=0.069 Sum_probs=51.7
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCH-----HHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHH---HHHHh--CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAISFVKSA-----EVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLE---EIILA--SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~sa-----edV~~lr~~l~~~~~~~~i~IiAKIEt~~av~Nld---eIl~~--sDGImIa 355 (584)
.+.++...+.|+|.|.++-+..- -+...++++.+ . .++++|+= -|+.+.+ ++++. +||+|+|
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~--~--~~ipvia~----GGi~s~~di~~~~~~g~~dgv~~g 229 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSE--A--VKIPVIAS----GGAGKPEHFYEAFTKGKADAALAA 229 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHH--h--CCCCEEEe----CCCCCHHHHHHHHHcCCcceeeEh
Confidence 34456667899999998766541 12344444432 1 13555552 2333333 44432 7999999
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHcCCCe
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPV 386 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPv 386 (584)
+-...-++++ +.+.+.|+++|.|+
T Consensus 230 ~a~~~~~~~~-------~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 230 SVFHYREITI-------GEVKEYLAERGIPV 253 (254)
T ss_pred HHHhCCCCCH-------HHHHHHHHHCCCcc
Confidence 9877666654 35677788888775
No 309
>PRK14847 hypothetical protein; Provisional
Probab=52.07 E-value=3.5e+02 Score=29.44 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=95.6
Q ss_pred cCCcccCCccccCCCCCccCHhhhHHhH-hcCCCEEEEcCC-CCHHHHHHHHHHHHhhc--CCCCceEEEeecCHHHHhc
Q 007936 266 RDGSLVRERNAMLPTISPKDWLDIDFGI-TEGVDFIAISFV-KSAEVINHLKSYIAARS--RDSDIAVIAKIESIDSLKN 341 (584)
Q Consensus 266 ~~~~~lp~~~~~lp~lt~kD~~dI~~al-~~gvD~I~lSfV-~saedV~~lr~~l~~~~--~~~~i~IiAKIEt~~av~N 341 (584)
|||.+-||.. +|..++..|...+ +.|+|.|=+.|- -+.+|.+.++++.+... .+..+..++..=. +.
T Consensus 41 RDGeQ~pGv~-----fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~----~d 111 (333)
T PRK14847 41 RDGNQALIEP-----MDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEALTQSRP----DL 111 (333)
T ss_pred CccCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEEEecCcH----HH
Confidence 5666677763 4667777776655 689999999885 46777777777774211 0222344443311 22
Q ss_pred HHHHHHh-C----C--EEEEeCCccccc----CCCCChHHHHHHHHHHHHHcCC-------CeEEehhhhHhhhcCCCCC
Q 007936 342 LEEIILA-S----D--GAMVARGDLGAQ----IPLEQVPSAQQKIVQLCRQLNK-------PVIVASQLLESMIEYPTPT 403 (584)
Q Consensus 342 ldeIl~~-s----D--GImIaRGDLg~e----i~~e~V~~~Qk~II~~c~~~gK-------PvivATqmLeSMi~~p~PT 403 (584)
+|.-++. . + .+.++-.|+-.+ ...+++...-.+.++.++.+|. -|-+.. -.-+
T Consensus 112 Id~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~---------EDas 182 (333)
T PRK14847 112 IARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSP---------ETFS 182 (333)
T ss_pred HHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEee---------ecCC
Confidence 3333333 1 2 344444554332 2235666667778888898854 344431 1466
Q ss_pred hhhH---HHHHHHH-Hc------ccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 404 RAEV---ADVSEAV-RQ------RADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 404 rAEv---~Dv~nav-~~------G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
|++. .+++.++ .. |+|-+-|+ +|-=-.-|.+.-+.++.++.+.
T Consensus 183 Rad~dfL~~~~~~a~~~~ga~r~~a~~i~l~-DTVG~~~P~~~~~~i~~l~~~~ 235 (333)
T PRK14847 183 LAELDFAREVCDAVSAIWGPTPQRKMIINLP-ATVESSTANVYADQIEWMHRSL 235 (333)
T ss_pred CCCHHHHHHHHHHHHHHhCCCccCCcEEEeC-CccccCCHHHHHHHHHHHHHhc
Confidence 7764 4445543 33 46667776 6666677998888888887544
No 310
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=52.06 E-value=1.5e+02 Score=32.65 Aligned_cols=125 Identities=12% Similarity=0.138 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+..|.|+.+. .|..+-...+.+.-..|++.+... ....++++...++..+- .|+.-
T Consensus 127 alA~~aa~~Gi~~~Iv-----------vP~~~~~~K~~~ir~~GAeVi~~~------~~~~~a~~~a~~~a~~~-g~~~v 188 (396)
T TIGR03528 127 GVAWAANQLGQKSVVY-----------MPKGSAQIRLENIRAEGAECTITD------LNYDDAVRLAWKMAQEN-GWVMV 188 (396)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCcHHHHHHHHhcCCEEEEEC------CCHHHHHHHHHHHHHhc-CcEee
Confidence 4567899999999886 344444455677778999977653 23457777777765431 22110
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC------CcEEEEccCCchHHHHHhc-----cCCCCc-EEEEcCc
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE------VDALFVYTKTGHMASLLSR-----CRPDCP-IFAFTST 521 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~------a~aIvv~T~sG~tA~~lSr-----~RP~~P-IiavT~~ 521 (584)
..+..++.. ..+.........-+.|+.++++ .++||+.+-+|.++-.++. ++|..| |++|-+.
T Consensus 189 ----~~~~~~~~~-~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~ 263 (396)
T TIGR03528 189 ----QDTAWEGYE-KIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPD 263 (396)
T ss_pred ----ccccccccc-cCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccC
Confidence 000001110 1111222333445666666664 6899999888886654443 367765 8888885
No 311
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=51.79 E-value=27 Score=34.87 Aligned_cols=65 Identities=25% Similarity=0.303 Sum_probs=47.7
Q ss_pred CCCceEEEecC--CCCCC----HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCce-EEEe
Q 007936 104 TRRTKLVCTIG--PATCG----FEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAV-AIMM 168 (584)
Q Consensus 104 ~r~tKIi~TiG--Pa~~~----~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i-~I~l 168 (584)
..++|||.+-= ..+.+ .+.+++|.+.|.++++|-....+.++..++++..++..+..+.|+ ++.|
T Consensus 111 ~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~M 182 (224)
T PF01487_consen 111 KGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISM 182 (224)
T ss_dssp HTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEE
T ss_pred hCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEc
Confidence 35799999875 22222 357889999999999999999999999999999988887766665 4433
No 312
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=51.56 E-value=2.4e+02 Score=28.65 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=26.7
Q ss_pred HhhhHHhHhcCCCEEEEcCCC----------CHHHHHHHHHHHH
Q 007936 286 WLDIDFGITEGVDFIAISFVK----------SAEVINHLKSYIA 319 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~----------saedV~~lr~~l~ 319 (584)
.+.++.+-++|.|+|=++.-. +.+++.++++.++
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~ 67 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALV 67 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHH
Confidence 345677889999999887432 6788999999985
No 313
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=51.53 E-value=43 Score=34.91 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=47.5
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHH--HhcHHHHHHh-CCEEEEeC
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDS--LKNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~a--v~NldeIl~~-sDGImIaR 356 (584)
+-...+++..+++.|+|||.+..+. +++++++++.+. .++++.| .-| .+|+.++++. +|+|-++.
T Consensus 188 ev~s~eea~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~-----~~ipi~A----iGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 188 EVETLEQLKEALEAGADIIMLDNMS-PEELREAVALLK-----GRVLLEA----SGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred EECCHHHHHHHHHcCCCEEEECCcC-HHHHHHHHHHcC-----CCCcEEE----ECCCCHHHHHHHHHcCCCEEEEEe
Confidence 4456788889999999999999884 788888777662 1344333 233 4688888888 89998864
No 314
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=51.40 E-value=35 Score=35.31 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=54.0
Q ss_pred CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCC
Q 007936 349 SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESA 428 (584)
Q Consensus 349 sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa 428 (584)
+..+|.--.-.|--.|+.. +...+.|++ +.+.|||+-- ..-+ -+|++.|.+.|+|++++..--+
T Consensus 145 caavMPlgsPIGSg~Gi~n-~~~l~~i~~---~~~vPvIvDA---------GiG~---pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQN-PYNLRIIIE---RADVPVIVDA---------GIGT---PSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -SEBEEBSSSTTT---SST-HHHHHHHHH---HGSSSBEEES------------S---HHHHHHHHHTT-SEEEESHHHH
T ss_pred CCEEEecccccccCcCCCC-HHHHHHHHH---hcCCcEEEeC---------CCCC---HHHHHHHHHcCCceeehhhHHh
Confidence 3456654334444444444 344444543 4499999852 2222 2677999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhh
Q 007936 429 MGQFPDKALTVLRSVSLRIEK 449 (584)
Q Consensus 429 ~G~yPveaV~~m~~I~~~aE~ 449 (584)
..+.|+.-.+-|+.-++.-..
T Consensus 209 ~A~dPv~MA~Af~~AV~AGR~ 229 (247)
T PF05690_consen 209 KAKDPVAMARAFKLAVEAGRL 229 (247)
T ss_dssp TSSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 999999988888776655543
No 315
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=51.38 E-value=86 Score=32.55 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=55.6
Q ss_pred HHHHHh-CCEEEEe-CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHH-HHHcccc
Q 007936 343 EEIILA-SDGAMVA-RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE-AVRQRAD 419 (584)
Q Consensus 343 deIl~~-sDGImIa-RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av~~G~D 419 (584)
+..++. +||+++. ----+..+..++-..+.+..++.++ -..||++.+ ...+-.|..+.+. |-..|+|
T Consensus 26 ~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv---------~~~s~~~~i~~a~~a~~~Gad 95 (285)
T TIGR00674 26 DFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT---------GSNATEEAISLTKFAEDVGAD 95 (285)
T ss_pred HHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC---------CCccHHHHHHHHHHHHHcCCC
Confidence 333443 7999983 2112233343444444444444442 246777653 1233445544444 7788999
Q ss_pred eEeecCCCCCCCChHHHHHHHHHHHHHHh
Q 007936 420 ALMLSGESAMGQFPDKALTVLRSVSLRIE 448 (584)
Q Consensus 420 ~imLs~ETa~G~yPveaV~~m~~I~~~aE 448 (584)
++|+..=.-...-+.+.++..+.|+..++
T Consensus 96 ~v~v~pP~y~~~~~~~i~~~~~~i~~~~~ 124 (285)
T TIGR00674 96 GFLVVTPYYNKPTQEGLYQHFKAIAEEVD 124 (285)
T ss_pred EEEEcCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 99998655444445777788888887765
No 316
>PRK07695 transcriptional regulator TenI; Provisional
Probab=51.14 E-value=36 Score=33.36 Aligned_cols=35 Identities=6% Similarity=-0.034 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHH
Q 007936 121 EQLEALAVGGMNVARINMCHGTREWHRRVIERVRR 155 (584)
Q Consensus 121 e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 155 (584)
..+.+++++|++.+-|.--+.+.++..++++.+++
T Consensus 18 ~~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 18 VAVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 33445899999999999999999988888888774
No 317
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=50.71 E-value=2.1e+02 Score=28.53 Aligned_cols=120 Identities=15% Similarity=0.149 Sum_probs=59.3
Q ss_pred CHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHH---------------------HHhcHH
Q 007936 285 DWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESID---------------------SLKNLE 343 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~---------------------av~Nld 343 (584)
..+|++..++.|+|+|.+.- ..-++...++++.+. .+.+ .|+.-+..+. .++-+.
T Consensus 85 ~~~d~~~~~~~G~~~vilg~-~~l~~~~~~~~~~~~--~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (232)
T TIGR03572 85 SLEDAKKLLSLGADKVSINT-AALENPDLIEEAARR--FGSQ-CVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAR 160 (232)
T ss_pred CHHHHHHHHHcCCCEEEECh-hHhcCHHHHHHHHHH--cCCc-eEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHH
Confidence 46677777888999988762 222333344444421 1222 1333333222 122222
Q ss_pred HHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHH-HHHcccceE
Q 007936 344 EIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE-AVRQRADAL 421 (584)
Q Consensus 344 eIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av~~G~D~i 421 (584)
...+. +|.+.+.- ...+-..+.. -.+.+-+.++..+.|++.+.. .-+.. |+.. .-..|+|++
T Consensus 161 ~~~~~G~d~i~i~~--i~~~g~~~g~--~~~~~~~i~~~~~ipvia~GG---------i~s~~---di~~~l~~~gadgV 224 (232)
T TIGR03572 161 EAEQLGAGEILLNS--IDRDGTMKGY--DLELIKTVSDAVSIPVIALGG---------AGSLD---DLVEVALEAGASAV 224 (232)
T ss_pred HHHHcCCCEEEEeC--CCccCCcCCC--CHHHHHHHHhhCCCCEEEECC---------CCCHH---HHHHHHHHcCCCEE
Confidence 22222 68787752 2221111111 122333344556899998754 33444 4444 344699999
Q ss_pred eec
Q 007936 422 MLS 424 (584)
Q Consensus 422 mLs 424 (584)
+++
T Consensus 225 ~vg 227 (232)
T TIGR03572 225 AAA 227 (232)
T ss_pred EEe
Confidence 986
No 318
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=50.63 E-value=38 Score=38.21 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=40.4
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHH
Q 007936 106 RTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRR 155 (584)
Q Consensus 106 ~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 155 (584)
+.++-+-+|+.-.+.+..+.|+++|++++-++-+||..+...+.++++|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 45566677755466899999999999999999999998777777777665
No 319
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=50.50 E-value=49 Score=34.47 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=47.1
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHH--HhcHHHHHHh-CCEEEEe
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDS--LKNLEEIILA-SDGAMVA 355 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~a--v~NldeIl~~-sDGImIa 355 (584)
+-...+++..++..|+|+|.+-.+ ++++++++.++++. . .+++ ||=--| .+|+.++++. +|+|-++
T Consensus 187 ev~t~eea~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~--~-~~i~----i~asGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 187 EVETLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLKG--L-PRVL----LEASGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred ecCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcc--C-CCeE----EEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 345577888899999999999876 56888888887732 1 2333 333333 4688888888 8999874
No 320
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=50.40 E-value=5.4 Score=43.57 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=57.6
Q ss_pred CccCHhhhHH-hHhcCCCEEEEcCCC---------CHHH--------HHHHHHHHHhhcCCCCceEEEeecCHHHHhcHH
Q 007936 282 SPKDWLDIDF-GITEGVDFIAISFVK---------SAEV--------INHLKSYIAARSRDSDIAVIAKIESIDSLKNLE 343 (584)
Q Consensus 282 t~kD~~dI~~-al~~gvD~I~lSfV~---------saed--------V~~lr~~l~~~~~~~~i~IiAKIEt~~av~Nld 343 (584)
.....+++.. +.+.|+|+|.+.=-+ ..++ +.++.++|...+..+++.+++ --++.+-+
T Consensus 212 ~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~----sGgl~t~~ 287 (368)
T PF01645_consen 212 AGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIA----SGGLRTGD 287 (368)
T ss_dssp -STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEE----ESS--SHH
T ss_pred CCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEE----eCCccCHH
Confidence 4456677766 789999999986443 3344 667778886555556677666 25677778
Q ss_pred HHHHh----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehh
Q 007936 344 EIILA----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQ 391 (584)
Q Consensus 344 eIl~~----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATq 391 (584)
+++++ +|++-+||+=| +.++ ....+.|.....|+.+|||
T Consensus 288 dv~kalaLGAD~v~igt~~l-iAlG--------C~~~~~C~~~~CP~Giatq 330 (368)
T PF01645_consen 288 DVAKALALGADAVYIGTAAL-IALG--------CIQCRKCHTGTCPVGIATQ 330 (368)
T ss_dssp HHHHHHHCT-SEEE-SHHHH-HHCT----------S---CCCT--TTSSS--
T ss_pred HHHHHHhcCCCeeEecchhh-hhcc--------hHHHhcccCCCCCceeeec
Confidence 88877 89999998766 2233 2356788888999999998
No 321
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=50.39 E-value=51 Score=30.02 Aligned_cols=68 Identities=24% Similarity=0.295 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 310 VINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 310 dV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
-+..+++.+. +.+....+.+.-+.. .-++++++++-+|.|+.+-.+ ......+-+.|+++++|+|.+
T Consensus 57 Ka~~~~~~l~--~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~ 123 (135)
T PF00899_consen 57 KAEAAKERLQ--EINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDA 123 (135)
T ss_dssp HHHHHHHHHH--HHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHH--HhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 3555666663 335556666644333 457888999889988887443 456778888999999999976
Q ss_pred h
Q 007936 390 S 390 (584)
Q Consensus 390 T 390 (584)
.
T Consensus 124 ~ 124 (135)
T PF00899_consen 124 G 124 (135)
T ss_dssp E
T ss_pred E
Confidence 3
No 322
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=49.91 E-value=2.2e+02 Score=30.27 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=76.8
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCC--EEEEeC-C--ccc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASD--GAMVAR-G--DLG 360 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sD--GImIaR-G--DLg 360 (584)
....+...+.|+|+|..+.+.++ +.++...++.+ .+..++|-+- +++|-+.... .=||+. + .-+
T Consensus 77 ~~Ea~~L~eaGvDiIDaT~r~rP--~~~~~~~iK~~---~~~l~MAD~s------tleEal~a~~~Gad~I~TTl~gyT~ 145 (283)
T cd04727 77 FVEAQILEALGVDMIDESEVLTP--ADEEHHIDKHK---FKVPFVCGAR------NLGEALRRISEGAAMIRTKGEAGTG 145 (283)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc--HHHHHHHHHHH---cCCcEEccCC------CHHHHHHHHHCCCCEEEecCCCCCC
Confidence 56667778999999999998888 45566666422 2577888554 4666555421 112221 0 000
Q ss_pred c-----------------cCCC--CChHH-------HHHHHHHHHHHcCCCeE-EehhhhHhhhcCCCCChhhHHHHHHH
Q 007936 361 A-----------------QIPL--EQVPS-------AQQKIVQLCRQLNKPVI-VASQLLESMIEYPTPTRAEVADVSEA 413 (584)
Q Consensus 361 ~-----------------ei~~--e~V~~-------~Qk~II~~c~~~gKPvi-vATqmLeSMi~~p~PTrAEv~Dv~na 413 (584)
- ..++ +..+. -.+.+-+.+.....||+ +| ....-|.+ ++..+
T Consensus 146 ~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iA--------eGGI~Tpe---na~~v 214 (283)
T cd04727 146 NVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFA--------AGGVATPA---DAALM 214 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEE--------eCCCCCHH---HHHHH
Confidence 0 0011 00000 00112233334568987 34 11222333 44666
Q ss_pred HHcccceEeecCCCCCCCChHHHHHHHHHHHH
Q 007936 414 VRQRADALMLSGESAMGQFPDKALTVLRSVSL 445 (584)
Q Consensus 414 v~~G~D~imLs~ETa~G~yPveaV~~m~~I~~ 445 (584)
...|+|+++..+.-..-..|.+.++.+.....
T Consensus 215 ~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 215 MQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred HHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 77899999998766555789988888766553
No 323
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=49.84 E-value=32 Score=32.35 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=39.3
Q ss_pred HHHhcHHHHHHh--CC--EEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEeh
Q 007936 337 DSLKNLEEIILA--SD--GAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVAS 390 (584)
Q Consensus 337 ~av~NldeIl~~--sD--GImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivAT 390 (584)
+.++++++.+.. .| .+++|--|+....+.+++....+.+++.|++.|.++++.|
T Consensus 46 ~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 46 QMLVRFYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 344444443322 45 4566777888777888899999999999999999988764
No 324
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=49.77 E-value=1.2e+02 Score=31.26 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCEEEEeCCccc--ccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHH-HHHcccceEeecC
Q 007936 349 SDGAMVARGDLG--AQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE-AVRQRADALMLSG 425 (584)
Q Consensus 349 sDGImIaRGDLg--~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av~~G~D~imLs~ 425 (584)
+|||++. |--| ..+..++-..+.+.+++.++ -..|+++.+ ..++-.|..+.+. |-..|+|++|+..
T Consensus 32 v~gi~~~-GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv---------~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 32 VDGLVVL-GTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGV---------GANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred CCEEEEC-CCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEec---------CCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 7898875 3211 22223333333333444332 246777653 3455566666665 5556999999976
Q ss_pred CCCCCCChHHHHHHHHHHHHHHh
Q 007936 426 ESAMGQFPDKALTVLRSVSLRIE 448 (584)
Q Consensus 426 ETa~G~yPveaV~~m~~I~~~aE 448 (584)
-.-...-+.+.++..+.|+....
T Consensus 101 P~y~~~~~~~~~~~~~~ia~~~~ 123 (281)
T cd00408 101 PYYNKPSQEGIVAHFKAVADASD 123 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCC
Confidence 54444446788888888877643
No 325
>PRK08526 threonine dehydratase; Provisional
Probab=49.73 E-value=1.3e+02 Score=33.18 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 373 QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 373 k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
.-+...|+..|.|+.+- .|..+....+...-..|++.++. |...-++++...++.++- .+
T Consensus 81 ~avA~aa~~~Gi~~~Iv-----------mP~~~p~~k~~~~r~~GA~Vv~~------g~~~~~a~~~a~~~a~~~-g~-- 140 (403)
T PRK08526 81 QGVAISAKKFGIKAVIV-----------MPEATPLLKVSGTKALGAEVILK------GDNYDEAYAFALEYAKEN-NL-- 140 (403)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHhCCCEEEEE------CCCHHHHHHHHHHHHHhc-CC--
Confidence 35667899999998885 35555445556666789988764 233566666655543321 11
Q ss_pred hhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhc-CCcEEEEccCCchHHHHHh----ccCCCCcEEEEcCch
Q 007936 453 EEKRHEAMELPDVGSSFAESISEEICNSAAKMANNL-EVDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTT 522 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l-~a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~ 522 (584)
...++... + ........-+.|+.+++ +.++||+..-+|.++.-++ ..+|.+.||++-+..
T Consensus 141 -------~~v~p~~~--~-~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~ 205 (403)
T PRK08526 141 -------TFIHPFED--E-EVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKG 205 (403)
T ss_pred -------EeeCCCCC--H-HHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11111111 1 12222334466777766 5899999999998875544 457999999998854
No 326
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=49.68 E-value=3.3e+02 Score=29.48 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=35.0
Q ss_pred CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCC---CChHHHHHHHHHHHHHHhhhh
Q 007936 383 NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMG---QFPDKALTVLRSVSLRIEKWW 451 (584)
Q Consensus 383 gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G---~yPveaV~~m~~I~~~aE~~~ 451 (584)
+.|+|....+- .-.|+..++..|||++++..---.+ .=+..+.+++..+..+....+
T Consensus 261 ~ipvia~GGI~------------~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m 320 (352)
T PRK05437 261 DLPIIASGGIR------------NGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAM 320 (352)
T ss_pred CCeEEEECCCC------------CHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 67887654322 2478999999999999987421111 114445556666666555543
No 327
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=49.62 E-value=1.7e+02 Score=31.31 Aligned_cols=89 Identities=25% Similarity=0.317 Sum_probs=48.4
Q ss_pred CceEEEee--cCHHHHhcH-HHHHHh-CCEEEEe----CCcccccCCCCChHHHHHHHHHHHHH-cCCCeEEehhhhHhh
Q 007936 326 DIAVIAKI--ESIDSLKNL-EEIILA-SDGAMVA----RGDLGAQIPLEQVPSAQQKIVQLCRQ-LNKPVIVASQLLESM 396 (584)
Q Consensus 326 ~i~IiAKI--Et~~av~Nl-deIl~~-sDGImIa----RGDLg~ei~~e~V~~~Qk~II~~c~~-~gKPvivATqmLeSM 396 (584)
+..++++| .+.+....+ ..+-+. +|+|-+- +++-+.. +.. .+..-.++++..++ ..+||++=
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~-g~~-~~~~~~eil~~v~~~~~iPV~vK------- 171 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDIS-GAE-VEQRYLDILRAVKSAVSIPVAVK------- 171 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCc-ccc-HHHHHHHHHHHHHhccCCcEEEE-------
Confidence 36889988 222222222 222222 6888882 3332211 222 22223456665554 48999974
Q ss_pred hcCCCCChhhHHHHHHHH-HcccceEeecCC
Q 007936 397 IEYPTPTRAEVADVSEAV-RQRADALMLSGE 426 (584)
Q Consensus 397 i~~p~PTrAEv~Dv~nav-~~G~D~imLs~E 426 (584)
-.|.-.++.+++.++ ..|+|++.+.+-
T Consensus 172 ---l~p~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 172 ---LSPYFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred ---eCCCchhHHHHHHHHHHcCCCeEEEECC
Confidence 134434566777754 589999998744
No 328
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.38 E-value=77 Score=33.58 Aligned_cols=66 Identities=11% Similarity=0.194 Sum_probs=48.3
Q ss_pred cCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHH--HhcHHHHHHh-CCEEEEeC
Q 007936 284 KDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDS--LKNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~a--v~NldeIl~~-sDGImIaR 356 (584)
...+++..+++.|+|+|.+-. -++++++++.+.++. .+.++.+.| .-| .+|+.+.++. +|+|-++.
T Consensus 204 ~tleea~eA~~~GaD~I~LDn-~~~e~l~~av~~~~~--~~~~i~leA----sGGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 204 ETLEQVQEALEYGADIIMLDN-MPVDLMQQAVQLIRQ--QNPRVKIEA----SGNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHh--cCCCeEEEE----ECCCCHHHHHHHHHcCCCEEEEch
Confidence 557888899999999999995 567899998887742 233444443 222 4577888877 89999875
No 329
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=49.11 E-value=96 Score=32.00 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=53.4
Q ss_pred CCEEEEeCCccc--ccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhH-HHHHHHHHcccceEeecC
Q 007936 349 SDGAMVARGDLG--AQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEV-ADVSEAVRQRADALMLSG 425 (584)
Q Consensus 349 sDGImIaRGDLg--~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv-~Dv~nav~~G~D~imLs~ 425 (584)
+||+++. |--| ..+..++-..+.+...+.|. -..|+++.+. .++-.|. .-.-.|...|+|++|+..
T Consensus 35 v~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~~~~~~~~~a~~a~~~G~d~v~~~~ 103 (284)
T cd00950 35 TDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGTG---------SNNTAEAIELTKRAEKAGADAALVVT 103 (284)
T ss_pred CCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEeccC---------CccHHHHHHHHHHHHHcCCCEEEEcc
Confidence 7999986 3322 23333443344444444432 2467765431 2233343 444557888999999997
Q ss_pred CCCCCCChHHHHHHHHHHHHHHh
Q 007936 426 ESAMGQFPDKALTVLRSVSLRIE 448 (584)
Q Consensus 426 ETa~G~yPveaV~~m~~I~~~aE 448 (584)
-.....-+-+.++..+.|+..+.
T Consensus 104 P~~~~~~~~~l~~~~~~ia~~~~ 126 (284)
T cd00950 104 PYYNKPSQEGLYAHFKAIAEATD 126 (284)
T ss_pred cccCCCCHHHHHHHHHHHHhcCC
Confidence 76555556788888888887654
No 330
>PRK15447 putative protease; Provisional
Probab=49.09 E-value=84 Score=33.19 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=49.4
Q ss_pred CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 349 SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 349 sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+|+|.+|-..++.-.++ -..-.+++++.|+++||.|.++|.-+ .....|...+...+..|.|+|+.+
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 89999996666665443 33556788999999999999987322 122457888888888899988753
No 331
>PRK07591 threonine synthase; Validated
Probab=48.91 E-value=1.5e+02 Score=32.73 Aligned_cols=120 Identities=11% Similarity=0.120 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 373 QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 373 k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
.-+...|+++|.|+.+. .|..+....+...-..|++.+..- |.| .++++.+.+++.+-+.|+.
T Consensus 150 ~alA~~aa~~Gl~~~I~-----------vP~~~~~~k~~~~~~~GA~Vi~v~-----g~~-d~a~~~a~~~~~~~~~~~~ 212 (421)
T PRK07591 150 NSVAAHAARAGLDSCVF-----------IPADLEAGKIVGTLVYGPTLVAVD-----GNY-DDVNRLCSELANEHEGWGF 212 (421)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHHcCCEEEEEC-----CCH-HHHHHHHHHHHHhcCCEEE
Confidence 34567899999999886 455555556677778999988765 344 4677776666543222211
Q ss_pred hhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC---CcEEEEccCCchHHHHHhcc-----------CCCCcEEEE
Q 007936 453 EEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE---VDALFVYTKTGHMASLLSRC-----------RPDCPIFAF 518 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~---a~aIvv~T~sG~tA~~lSr~-----------RP~~PIiav 518 (584)
. +.... +. ..+....-+.|+.++++ .++||+.+-+|.+..-+.+. +|...|+++
T Consensus 213 ~---------n~~~~--p~-~ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~V 280 (421)
T PRK07591 213 V---------NINLR--PY-YAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGA 280 (421)
T ss_pred e---------cCCCC--cc-cccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEE
Confidence 0 00000 10 11222333667777774 68999999999998666543 688899999
Q ss_pred cCc
Q 007936 519 TST 521 (584)
Q Consensus 519 T~~ 521 (584)
-+.
T Consensus 281 q~~ 283 (421)
T PRK07591 281 QAE 283 (421)
T ss_pred ecC
Confidence 985
No 332
>PRK11761 cysM cysteine synthase B; Provisional
Probab=48.60 E-value=1.8e+02 Score=30.54 Aligned_cols=122 Identities=8% Similarity=0.065 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+.+|.|+.+- .|..+.-..+...-..|++.+....+ |.| .++.+...++.++- .+
T Consensus 77 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~~~~~---~~~-~~~~~~a~~l~~~~-~~--- 137 (296)
T PRK11761 77 ALAMIAAIKGYRMKLI-----------MPENMSQERRAAMRAYGAELILVPKE---QGM-EGARDLALQMQAEG-EG--- 137 (296)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHhcc-CC---
Confidence 3456899999999886 24333333444555679999888642 333 33333333332211 11
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHH----HHHhccCCCCcEEEEcCch
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMA----SLLSRCRPDCPIFAFTSTT 522 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA----~~lSr~RP~~PIiavT~~~ 522 (584)
+..++... +..+......-+.|+.++++ .++||+.+-+|.+. +.+..++|.+.|+++-+..
T Consensus 138 ------~~~~~~~n--~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~ 204 (296)
T PRK11761 138 ------KVLDQFAN--PDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEE 204 (296)
T ss_pred ------EecCCCCC--hhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 11122111 11111112233456666663 79999999999766 5555668999999999964
No 333
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=48.52 E-value=3e+02 Score=27.78 Aligned_cols=140 Identities=11% Similarity=0.171 Sum_probs=73.6
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCC
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLE 366 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e 366 (584)
..++...+.|+|++.+-..-..+-++.+++..+.. .+..+..+..+.+..+ +++.+.. .+++
T Consensus 71 ~~i~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~-~~~~~~~V~~lts~~~-~~l~~~~--------------~~~~-- 132 (230)
T PRK00230 71 KAVRALAKLGVDMVNVHASGGPRMMKAAREALEPK-SRPLLIAVTVLTSMDE-EDLAELG--------------INLS-- 132 (230)
T ss_pred HHHHHHHHcCCCEEEEcccCCHHHHHHHHHHhhcc-CCCeEEEEEECCCCCH-HHHHhCc--------------CCCC--
Confidence 34555679999999999988888888888876321 1122444445555422 3332100 0111
Q ss_pred ChHHHHHHHHHHHHHcCCCeEEehhhhHhh------------hcCCCC------ChhhHHHHHHHHHcccceEeecCCCC
Q 007936 367 QVPSAQQKIVQLCRQLNKPVIVASQLLESM------------IEYPTP------TRAEVADVSEAVRQRADALMLSGESA 428 (584)
Q Consensus 367 ~V~~~Qk~II~~c~~~gKPvivATqmLeSM------------i~~p~P------TrAEv~Dv~nav~~G~D~imLs~ETa 428 (584)
+...-.++.+.+.+.|...+++..-...+ +-.-+| ....+..+..|+..|+|.++...--.
T Consensus 133 -~~~~v~~~a~~a~~~g~dgvv~~~~~~~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~ 211 (230)
T PRK00230 133 -LEEQVLRLAKLAQEAGLDGVVCSAQEAAAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPIT 211 (230)
T ss_pred -HHHHHHHHHHHHHHcCCeEEEeChHHHHHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCccc
Confidence 11111122222222233222211110000 000112 11223467889999999999988877
Q ss_pred CCCChHHHHHHHHHHHH
Q 007936 429 MGQFPDKALTVLRSVSL 445 (584)
Q Consensus 429 ~G~yPveaV~~m~~I~~ 445 (584)
-...|.++++.+.+.+.
T Consensus 212 ~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 212 QAADPAAAYEAILAEIA 228 (230)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 78889999988776543
No 334
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=48.42 E-value=2.8e+02 Score=29.38 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHH---HHHHHHHHHhhcCCCC--ceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEV---INHLKSYIAARSRDSD--IAVIAKIESIDSLKNLEEIILA-SDGAMVARGDL 359 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saed---V~~lr~~l~~~~~~~~--i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDL 359 (584)
+.-|+.|-+.+...|+--.-..... ...+..++++.-.+.. ++|...+....-++.+..-++. .+-||+.
T Consensus 32 ~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~D---- 107 (285)
T PRK07709 32 QAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMID---- 107 (285)
T ss_pred HHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEe----
Q ss_pred cccCCCCChHHHHHHHHHHHHHcCCCe--------EEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCC
Q 007936 360 GAQIPLEQVPSAQQKIVQLCRQLNKPV--------IVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQ 431 (584)
Q Consensus 360 g~ei~~e~V~~~Qk~II~~c~~~gKPv--------ivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~ 431 (584)
|-++|+|+=...-+++++.|+++|.+| ..-...... ....-+..|+.+..... |+|++-.|-=|+-|.
T Consensus 108 gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~--~~~yT~peeA~~Fv~~T--gvD~LAvaiGt~HG~ 183 (285)
T PRK07709 108 ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAE--GVIYADPAECKHLVEAT--GIDCLAPALGSVHGP 183 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccc--cccCCCHHHHHHHHHHh--CCCEEEEeecccccC
Q ss_pred C---hHHHHHHHHHHHHHH
Q 007936 432 F---PDKALTVLRSVSLRI 447 (584)
Q Consensus 432 y---PveaV~~m~~I~~~a 447 (584)
| |.--.+.|.+|..+.
T Consensus 184 Y~~~p~L~~~~L~~I~~~~ 202 (285)
T PRK07709 184 YKGEPNLGFAEMEQVRDFT 202 (285)
T ss_pred cCCCCccCHHHHHHHHHHH
No 335
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=48.12 E-value=36 Score=34.26 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=44.9
Q ss_pred CCCceEEEecC-----CCCCC-HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCce
Q 007936 104 TRRTKLVCTIG-----PATCG-FEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAV 164 (584)
Q Consensus 104 ~r~tKIi~TiG-----Pa~~~-~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i 164 (584)
.+++|||++-= |+... .+.+++|.+.|.|+.+|-..--+.++..++++..+++.+....|+
T Consensus 116 ~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~p~ 182 (228)
T TIGR01093 116 KGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPL 182 (228)
T ss_pred HCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhcCCCCE
Confidence 35799999982 33221 357889999999999999887778888888887777654444553
No 336
>PRK07476 eutB threonine dehydratase; Provisional
Probab=48.06 E-value=1.6e+02 Score=31.22 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|++.|.|+.+. .|..+.-..+...-..|++.+... + ...++++...+++.+- .+
T Consensus 81 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~V~~~~-~-----~~~~~~~~a~~~~~~~-g~--- 139 (322)
T PRK07476 81 ALAYAARALGIRATIC-----------MSRLVPANKVDAIRALGAEVRIVG-R-----SQDDAQAEVERLVREE-GL--- 139 (322)
T ss_pred HHHHHHHHhCCCEEEE-----------eCCCCCHHHHHHHHHcCCEEEEEC-C-----CHHHHHHHHHHHHHhc-CC---
Confidence 5667899999998886 244333344555667899976553 2 2356666655554321 11
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhc-CCcEEEEccCCchHHHHHh----ccCCCCcEEEEcCc
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNL-EVDALFVYTKTGHMASLLS----RCRPDCPIFAFTST 521 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l-~a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~ 521 (584)
++..+... +.. .+.....+.|+.+++ +.++||+.+-+|.++--++ .+.|.+.|+++-+.
T Consensus 140 ------~~~~~~~n--~~~-~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~ 203 (322)
T PRK07476 140 ------TMVPPFDD--PRI-IAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSME 203 (322)
T ss_pred ------EEeCCCCC--cce-eechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 11111111 111 122345566676666 4688999999998876544 46799999999885
No 337
>PLN02565 cysteine synthase
Probab=47.96 E-value=1.8e+02 Score=31.07 Aligned_cols=122 Identities=10% Similarity=0.074 Sum_probs=74.8
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhh
Q 007936 375 IVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREE 454 (584)
Q Consensus 375 II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 454 (584)
+...|+.+|.|+.+- .|..+....+...-..|++.++...+ . ...++++...++.++-..+
T Consensus 82 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~--~~~~~~~~a~~l~~~~~~~---- 142 (322)
T PLN02565 82 LAFMAAAKGYKLIIT-----------MPASMSLERRIILLAFGAELVLTDPA--K--GMKGAVQKAEEILAKTPNS---- 142 (322)
T ss_pred HHHHHHHcCCeEEEE-----------eCCCCcHHHHHHHHHcCCEEEEeCCC--C--CcHHHHHHHHHHHHhCCCc----
Confidence 345899999999876 56666666677777889998875332 1 2234555444443321011
Q ss_pred hhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHHHHHh----ccCCCCcEEEEcCch
Q 007936 455 KRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTT 522 (584)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~ 522 (584)
+..++... +..+.--...-+.++.++++ .++||+..-+|.+..-++ .++|.+.|+++.+..
T Consensus 143 -----~~~~q~~n--~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~ 209 (322)
T PLN02565 143 -----YILQQFEN--PANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVE 209 (322)
T ss_pred -----EeecccCC--HhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 11122111 11111113444566767764 899999999998875554 557999999999964
No 338
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.82 E-value=1.9e+02 Score=31.25 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=65.7
Q ss_pred CCCccCHhhh--------HHhHhcCCCEEEEc-------------CCCCHH---------H---HHHHHHHHHhhcCC--
Q 007936 280 TISPKDWLDI--------DFGITEGVDFIAIS-------------FVKSAE---------V---INHLKSYIAARSRD-- 324 (584)
Q Consensus 280 ~lt~kD~~dI--------~~al~~gvD~I~lS-------------fV~sae---------d---V~~lr~~l~~~~~~-- 324 (584)
.||..|++.| +.+.+.|+|+|=+. ..+... . +.++.+.++ +..+
T Consensus 133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr-~~vg~~ 211 (353)
T cd04735 133 ELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQ-EVIDKH 211 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHH-HHhccc
Confidence 4677777666 56778999998663 233321 1 222222222 1223
Q ss_pred --CCceEEEeecCH----------HHHhcHHHHHHh-CCEEEEeCCcccccCCC-CC-hHHHHHHHHHHHHHcCCCeEEe
Q 007936 325 --SDIAVIAKIESI----------DSLKNLEEIILA-SDGAMVARGDLGAQIPL-EQ-VPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 325 --~~i~IiAKIEt~----------~av~NldeIl~~-sDGImIaRGDLg~ei~~-e~-V~~~Qk~II~~c~~~gKPvivA 389 (584)
.+..|-.+|--. +.++-+..+-+. .|.|=|..|.....-.. .. -....+.+ +.+...++|||..
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~i-k~~~~~~iPVi~~ 290 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELV-KERIAGRLPLIAV 290 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHH-HHHhCCCCCEEEE
Confidence 456777777432 222222333232 68888877654322111 11 11112222 2222237898875
Q ss_pred hhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 390 SQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 390 TqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
.. .-|.+ +...++..|+|++++.
T Consensus 291 Gg---------i~t~e---~ae~~l~~gaD~V~~g 313 (353)
T cd04735 291 GS---------INTPD---DALEALETGADLVAIG 313 (353)
T ss_pred CC---------CCCHH---HHHHHHHcCCChHHHh
Confidence 33 22333 3456666799999875
No 339
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=47.76 E-value=2.1e+02 Score=31.44 Aligned_cols=118 Identities=20% Similarity=0.190 Sum_probs=70.5
Q ss_pred hHhcCCCEEEE---cCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh--CCEEEEeCCcccc-----
Q 007936 292 GITEGVDFIAI---SFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA--SDGAMVARGDLGA----- 361 (584)
Q Consensus 292 al~~gvD~I~l---SfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~--sDGImIaRGDLg~----- 361 (584)
.+..|.|.|.- +...+++++.++.+.+++ .....+|+.|+=..-..+.+...++. +|+|.|.=++=|.
T Consensus 179 ~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~--~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~ 256 (392)
T cd02808 179 GIPPGVDLISPPPHHDIYSIEDLAQLIEDLRE--ATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPL 256 (392)
T ss_pred CCCCCccccCCCCCCCCCCHHHHHHHHHHHHH--hCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcc
Confidence 34455565542 346787888888777743 22237888998543233344444433 6999997654322
Q ss_pred ----cCCCCChHHHHHHHHHHHHHc----CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 362 ----QIPLEQVPSAQQKIVQLCRQL----NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 362 ----ei~~e~V~~~Qk~II~~c~~~----gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+.+++ .......+.+.+++. ..|+|.+.-+- --.|++.++..|||++.+.
T Consensus 257 ~~~~~~g~p-t~~~L~~v~~~~~~~~~~~~i~viasGGI~------------~g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 257 TFIDHVGLP-TELGLARAHQALVKNGLRDRVSLIASGGLR------------TGADVAKALALGADAVGIG 314 (392)
T ss_pred cccccCCcc-HHHHHHHHHHHHHHcCCCCCCeEEEECCCC------------CHHHHHHHHHcCCCeeeec
Confidence 12222 223444555555544 46777764332 3469999999999999875
No 340
>PLN02741 riboflavin synthase
Probab=47.74 E-value=54 Score=32.77 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=41.9
Q ss_pred EEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcC-------ceeCCCceeee
Q 007936 209 TITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDP-------GLLLPRANLTF 264 (584)
Q Consensus 209 ~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~-------G~l~s~Kgvnf 264 (584)
.+.+..+.+.+.+++||.|-+|+ +.|.|.++.++.+.+.+... |.++...-||.
T Consensus 24 ~l~i~~~~~~~~l~~G~SIAvnG--vCLTV~~~~~~~f~vdvipETl~~T~L~~l~~G~~VNL 84 (194)
T PLN02741 24 DLKIEASTVLDGVKLGDSIAVNG--TCLTVTEFDGDEFTVGLAPETLRKTSLGELKTGSLVNL 84 (194)
T ss_pred EEEEEcchhhcccccCCEEEECc--EEEEEEEECCCEEEEEEEHHHhhhCccccCCCCCEEee
Confidence 45555556778999999999987 99999999999888777643 56666666773
No 341
>PRK08639 threonine dehydratase; Validated
Probab=47.46 E-value=1.5e+02 Score=32.72 Aligned_cols=121 Identities=17% Similarity=0.226 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccce--EeecCCCCCCCChHHHHHHHHHHHHHHhhh
Q 007936 373 QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADA--LMLSGESAMGQFPDKALTVLRSVSLRIEKW 450 (584)
Q Consensus 373 k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~--imLs~ETa~G~yPveaV~~m~~I~~~aE~~ 450 (584)
.-+...|+..|.|+.+- .|..+-...+...-..|++. +.+. |...-++++.-.+++++ +.+
T Consensus 86 ~alA~~a~~~G~~~~Iv-----------mP~~~~~~k~~~~r~~GA~vv~v~~~-----g~~~~~a~~~a~~~a~~-~g~ 148 (420)
T PRK08639 86 QGVAYACRHLGIPGVIF-----------MPVTTPQQKIDQVRFFGGEFVEIVLV-----GDTFDDSAAAAQEYAEE-TGA 148 (420)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCChHHHHHHHHHcCCCeeEEEEe-----CcCHHHHHHHHHHHHHh-cCC
Confidence 35667899999999886 34444444455566679984 3343 34455666554444332 111
Q ss_pred hhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC----CcEEEEccCCchHHHHHh----ccCCCCcEEEEcCch
Q 007936 451 WREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE----VDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTT 522 (584)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~----a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~ 522 (584)
+ ..++... + .....-..-+.|+.+++. .++||+..-+|.++.-++ ..+|.+.|++|-+..
T Consensus 149 ~---------~~~~~~~--~-~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~ 216 (420)
T PRK08639 149 T---------FIPPFDD--P-DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAG 216 (420)
T ss_pred c---------ccCCCCC--h-hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1 1111111 1 111222333666666664 699999999998776555 447999999998753
No 342
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=47.44 E-value=39 Score=37.06 Aligned_cols=71 Identities=25% Similarity=0.406 Sum_probs=57.7
Q ss_pred ccccccchHhhhcCCCCCCCCceEEE-ecCC-CCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCc
Q 007936 86 IEVDSVTEAELKENGFRSTRRTKLVC-TIGP-ATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFA 163 (584)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~r~tKIi~-TiGP-a~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~ 163 (584)
+-.|+.+|+-|.|= -++|++|. ++|| .---..+++.-+++|.+..=| .|.+++.+.+..+..+.++|.|.-
T Consensus 67 ~i~D~~n~~Sl~em----ak~~~vivN~vGPyR~hGE~VVkacienG~~~vDI---SGEP~f~E~mq~kYhd~A~ekGVY 139 (423)
T KOG2733|consen 67 LIADSANEASLDEM----AKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDI---SGEPQFMERMQLKYHDLAKEKGVY 139 (423)
T ss_pred EEecCCCHHHHHHH----HhhhEEEEeccccceecCcHHHHHHHHcCCceecc---CCCHHHHHHHHHHHHHHHHhcCeE
Confidence 66899999999875 35677665 8999 355677999999999987655 489999999999999999998743
No 343
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=47.38 E-value=2.2e+02 Score=28.79 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCccccc
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGDLGAQ 362 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGDLg~e 362 (584)
.+++.|++.++|+|-++ ++-..+..+++.+ ..-.+|. -+..+++|..++ +|.|.+|+=-=...
T Consensus 72 d~~dlA~~~~AdGVHlG--q~D~~~~~ar~~~------~~~~iIG-----~S~h~~eea~~A~~~g~DYv~~GpifpT~t 138 (211)
T COG0352 72 DRVDLALAVGADGVHLG--QDDMPLAEARELL------GPGLIIG-----LSTHDLEEALEAEELGADYVGLGPIFPTST 138 (211)
T ss_pred CcHHHHHhCCCCEEEcC--CcccchHHHHHhc------CCCCEEE-----eecCCHHHHHHHHhcCCCEEEECCcCCCCC
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHH
Q 007936 363 IPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRS 442 (584)
Q Consensus 363 i~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~ 442 (584)
=+-. -+.--+.+-..+....+|++. +=.-.|.++ ......|+|+|-+.....-..-|..+++-+.+
T Consensus 139 K~~~-~~~G~~~l~~~~~~~~iP~vA--------IGGi~~~nv-----~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~ 204 (211)
T COG0352 139 KPDA-PPLGLEGLREIRELVNIPVVA--------IGGINLENV-----PEVLEAGADGVAVVSAITSAADPAAAAKALRN 204 (211)
T ss_pred CCCC-CccCHHHHHHHHHhCCCCEEE--------EcCCCHHHH-----HHHHHhCCCeEEehhHhhcCCCHHHHHHHHHH
Q ss_pred HHHH
Q 007936 443 VSLR 446 (584)
Q Consensus 443 I~~~ 446 (584)
....
T Consensus 205 ~~~~ 208 (211)
T COG0352 205 ALED 208 (211)
T ss_pred HHHh
No 344
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=47.36 E-value=78 Score=31.28 Aligned_cols=66 Identities=26% Similarity=0.312 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 311 INHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 311 V~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+..+.+.++ +.+.++.+-+.-++... +|++++++-.|.|+.+-.. +..+..+-+.|+++++|++.+
T Consensus 77 a~~~~~~l~--~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 77 VEVAAQRLR--ELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISA 142 (202)
T ss_pred HHHHHHHHH--HhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 344444452 33455555443333332 5788888889988876322 357778999999999999986
No 345
>PLN03013 cysteine synthase
Probab=47.35 E-value=1.5e+02 Score=33.21 Aligned_cols=123 Identities=11% Similarity=0.106 Sum_probs=72.8
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhh
Q 007936 375 IVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREE 454 (584)
Q Consensus 375 II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 454 (584)
+...|+.+|.|+++- .|..+....+...-..|++.++..+. .| | ..+++...+++++...+
T Consensus 190 LA~~a~~~G~~~~Vv-----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~-~-~~a~~~A~ela~~~~g~---- 250 (429)
T PLN03013 190 LAFIAASRGYRLILT-----------MPASMSMERRVLLKAFGAELVLTDPA--KG-M-TGAVQKAEEILKNTPDA---- 250 (429)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC-h-HHHHHHHHHHHhhcCCe----
Confidence 445899999999886 45555555556666789998876432 11 1 23444444443321111
Q ss_pred hhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhc--CCcEEEEccCCchHHHHHh----ccCCCCcEEEEcCchh
Q 007936 455 KRHEAMELPDVGSSFAESISEEICNSAAKMANNL--EVDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTTS 523 (584)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l--~a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~~ 523 (584)
+..++... +..+..-...-+-|+.+++ +.++||+..-+|.+..-++ ..+|.+.|+++-+...
T Consensus 251 -----~~~~qy~N--p~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs 318 (429)
T PLN03013 251 -----YMLQQFDN--PANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTES 318 (429)
T ss_pred -----EeCCCCCC--HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCC
Confidence 11222211 1111112233456666666 4899999999997775555 4579999999999654
No 346
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=47.22 E-value=17 Score=40.02 Aligned_cols=80 Identities=25% Similarity=0.288 Sum_probs=51.4
Q ss_pred hcCCcEEEEccCCchHHHHHh----ccCCCCcEEEEcCchhhhcccccccccEEEEecCC------CCHHHH--HHHHHH
Q 007936 487 NLEVDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRLSFS------DDMESN--LNRTFS 554 (584)
Q Consensus 487 ~l~a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~~~~------~d~~~~--i~~~~~ 554 (584)
..++|..+|-|.||+||.-+| -.+|..|-|.|||=- .+.|++ .|++++.+ .+.+.. --..+|
T Consensus 283 ~vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvTPIC--PhSLSF----RPIIlPds~~L~I~i~~dsR~~awvSfD 356 (409)
T KOG2178|consen 283 KVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTPIC--PHSLSF----RPIILPDSSELRVEVPLDSRSTAWVSFD 356 (409)
T ss_pred EEecceEEEecCCchhhhHhhcCCceecCCCCeEEEeccC--CCcccc----cceEccCccEEEEEeCccccccceEEec
Confidence 458999999999999999886 578999999999831 123333 34444321 112211 011111
Q ss_pred HHHHcCCCCCCCEEEEEec
Q 007936 555 LLKARGMIKSGDLVIAVSD 573 (584)
Q Consensus 555 ~~k~~g~i~~GD~Vvvv~g 573 (584)
.+.+.-+..||.+.+++.
T Consensus 357 -G~~r~El~~GD~i~I~tS 374 (409)
T KOG2178|consen 357 -GRPRQELSLGDYIDITTS 374 (409)
T ss_pred -CcchhhccCCceEEEEec
Confidence 345556889999998775
No 347
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=47.17 E-value=1.6e+02 Score=30.89 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=56.0
Q ss_pred HhhhHHhHhcCCCEEEEc------CCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-----CCEEEE
Q 007936 286 WLDIDFGITEGVDFIAIS------FVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-----SDGAMV 354 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lS------fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-----sDGImI 354 (584)
.+.+++.++.|+|+|++. +-=|.++-+++.+... +..+.++.||+-+-+ +.+.--+.++. +|++|+
T Consensus 29 ~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~-~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 29 RENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAV-STAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHH-HHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEE
Confidence 345678899999999874 4445555555555443 223456888988742 23333333333 699998
Q ss_pred eCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 355 ARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 355 aRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
-+--+.. ..-+.+...-+.|.+ +.+.|+++-
T Consensus 106 ~pP~y~~-~s~~~i~~~f~~v~~---a~~~pvilY 136 (296)
T TIGR03249 106 LPPYLIN-GEQEGLYAHVEAVCE---STDLGVIVY 136 (296)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHh---ccCCCEEEE
Confidence 7654321 122344444444444 457898864
No 348
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=47.12 E-value=1.9e+02 Score=28.67 Aligned_cols=106 Identities=13% Similarity=0.169 Sum_probs=62.5
Q ss_pred HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEE---e-ecCHH-----HHhcHHHHHHh-CCEEEEeCCcc
Q 007936 290 DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIA---K-IESID-----SLKNLEEIILA-SDGAMVARGDL 359 (584)
Q Consensus 290 ~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiA---K-IEt~~-----av~NldeIl~~-sDGImIaRGDL 359 (584)
+.+.+.|+..+- +.+.++++.+++.. ++.+++ | .+..+ .++.++...++ +|.|.+.-.++
T Consensus 34 ~~~~~~G~~~~~---~~~~~~~~~i~~~~-------~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~ 103 (219)
T cd04729 34 LAAVQGGAVGIR---ANGVEDIRAIRARV-------DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDR 103 (219)
T ss_pred HHHHHCCCeEEE---cCCHHHHHHHHHhC-------CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 456788898644 58899999988743 244442 1 11101 12355555555 78777753333
Q ss_pred cccCCCCChHHHHHHHHHHHHHcC-CCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 360 GAQIPLEQVPSAQQKIVQLCRQLN-KPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 360 g~ei~~e~V~~~Qk~II~~c~~~g-KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
. .|.. ..-+.+++.++++| .|+++. ..|..| ...+...|+|.+..+
T Consensus 104 ~--~p~~---~~~~~~i~~~~~~g~~~iiv~-----------v~t~~e---a~~a~~~G~d~i~~~ 150 (219)
T cd04729 104 P--RPDG---ETLAELIKRIHEEYNCLLMAD-----------ISTLEE---ALNAAKLGFDIIGTT 150 (219)
T ss_pred C--CCCC---cCHHHHHHHHHHHhCCeEEEE-----------CCCHHH---HHHHHHcCCCEEEcc
Confidence 2 1211 13457888888888 777764 234443 466778899998653
No 349
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=46.78 E-value=88 Score=30.89 Aligned_cols=66 Identities=14% Similarity=0.208 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCCCCceEEEeecCHH-HHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 312 NHLKSYIAARSRDSDIAVIAKIESID-SLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 312 ~~lr~~l~~~~~~~~i~IiAKIEt~~-av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+.+++.+ ++.|.++.|.+.-|... ..+|.+++++-.|.|+.+..+ ......+-+.|+++++|++.+
T Consensus 78 ~~~~~~L--~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 78 AASYEFL--QELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHHH--HHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 3445555 34467777777655543 246778888889988876221 456667889999999999986
No 350
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=46.74 E-value=1.2e+02 Score=31.49 Aligned_cols=173 Identities=17% Similarity=0.139 Sum_probs=84.6
Q ss_pred HHHHHHh-CCEEEEeC-CcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHH-HHHccc
Q 007936 342 LEEIILA-SDGAMVAR-GDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE-AVRQRA 418 (584)
Q Consensus 342 ldeIl~~-sDGImIaR-GDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av~~G~ 418 (584)
++-.++. +||++++= .-=+..+..++-..+.+..++.+ .-..||++.+. ..+-.|.-+.+. |...|+
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~-~~~~~vi~gv~---------~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAA-AGRVPVIAGVG---------ANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHH-TTSSEEEEEEE---------SSSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHc-cCceEEEecCc---------chhHHHHHHHHHHHhhcCc
Confidence 3444444 79999952 11122233334333333444333 23467776542 334445544444 778899
Q ss_pred ceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccC
Q 007936 419 DALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTK 498 (584)
Q Consensus 419 D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~ 498 (584)
|++|+..=--...-+-+.+++.+.|+...+.-.. .|+ .+... ...+.-. ...+++..=+..+|=.-+.
T Consensus 98 d~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~---iYn---~P~~t---g~~ls~~---~l~~L~~~~nv~giK~s~~ 165 (289)
T PF00701_consen 98 DAVLVIPPYYFKPSQEELIDYFRAIADATDLPII---IYN---NPART---GNDLSPE---TLARLAKIPNVVGIKDSSG 165 (289)
T ss_dssp SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEE---EEE---BHHHH---SSTSHHH---HHHHHHTSTTEEEEEESSS
T ss_pred eEEEEeccccccchhhHHHHHHHHHHhhcCCCEE---EEE---CCCcc---ccCCCHH---HHHHHhcCCcEEEEEcCch
Confidence 9999976544455677888888888866553110 000 01000 0111111 2344555223333332221
Q ss_pred Cc-hHHHHHhccCCCCcEEEEcCchhhhcccccccccEEEEe
Q 007936 499 TG-HMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPFRL 539 (584)
Q Consensus 499 sG-~tA~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~~~ 539 (584)
+- +..+.+.+..|...|+.- .+..+... +.+|..-.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~v~~G-~d~~~~~~--l~~G~~G~is 204 (289)
T PF00701_consen 166 DLERLIQLLRAVGPDFSVFCG-DDELLLPA--LAAGADGFIS 204 (289)
T ss_dssp BHHHHHHHHHHSSTTSEEEES-SGGGHHHH--HHTTSSEEEE
T ss_pred hHHHHHHHhhhcccCeeeecc-cccccccc--ccccCCEEEE
Confidence 11 334455566788777766 44444433 3456555554
No 351
>PRK06110 hypothetical protein; Provisional
Probab=46.72 E-value=2e+02 Score=30.38 Aligned_cols=118 Identities=11% Similarity=0.104 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+++|.++.+- | |..+.-......-..|++.+.. |....++++...++.++ +.+
T Consensus 84 alA~~a~~~G~~~~iv------v-----p~~~~~~k~~~i~~~GA~V~~~------~~~~~~~~~~a~~~~~~-~~~--- 142 (322)
T PRK06110 84 SVAFAARRHGLAATIV------V-----PHGNSVEKNAAMRALGAELIEH------GEDFQAAREEAARLAAE-RGL--- 142 (322)
T ss_pred HHHHHHHHcCCCEEEE------E-----cCCCCHHHHHHHHHcCCEEEEE------CCCHHHHHHHHHHHHHh-cCC---
Confidence 3456899999999886 2 2222112234455689997754 22345555544443222 111
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhc-CCcEEEEccCCchHHHHHh----ccCCCCcEEEEcCch
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNL-EVDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTT 522 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l-~a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~ 522 (584)
+..++. . + ...+....-+.|+.+++ +.++||+..-+|.+..-++ .++|.+.|+++-+..
T Consensus 143 ------~~~~~~-~--~-~~~~G~~t~~~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~ 206 (322)
T PRK06110 143 ------HMVPSF-H--P-DLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAH 206 (322)
T ss_pred ------EEcCCC-C--C-hHHhccchHHHHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 111111 1 1 22233344566677766 4689999999999887775 467999999999853
No 352
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=46.70 E-value=2.6e+02 Score=29.61 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=57.5
Q ss_pred HhhhHHhHhcCCCEEEEc------CCCCHHHHHHHHHHHHhhcCCCCceEEEeec---CHHHHhcHHHHHHh-CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAIS------FVKSAEVINHLKSYIAARSRDSDIAVIAKIE---SIDSLKNLEEIILA-SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lS------fV~saedV~~lr~~l~~~~~~~~i~IiAKIE---t~~av~NldeIl~~-sDGImIa 355 (584)
.+.+++.++.|+++|++. +.-|.++-+++.+... +..+.++.||+-+= |.++++-...--+. +|++|+-
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~-~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~ 110 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVV-ETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLG 110 (309)
T ss_pred HHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHH-HHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 445678889999999873 2334444444444332 22355688999884 45666555555554 8999987
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHc-CCCeEEe
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQL-NKPVIVA 389 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~-gKPvivA 389 (584)
+-..-. ..-+.+...-+. .|.+. +.|+++-
T Consensus 111 ~P~y~~-~~~~~l~~yf~~---va~a~~~lPv~iY 141 (309)
T cd00952 111 RPMWLP-LDVDTAVQFYRD---VAEAVPEMAIAIY 141 (309)
T ss_pred CCcCCC-CCHHHHHHHHHH---HHHhCCCCcEEEE
Confidence 543211 111333333333 44456 5888874
No 353
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=46.68 E-value=3.4e+02 Score=27.91 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=51.7
Q ss_pred CceEEEeec--CHHHH-hcHHHHHHh-CCEEEEeCCcc--cccCCCCChHHHHHHHHHHHHHc-CCCeEEehhhhHhhhc
Q 007936 326 DIAVIAKIE--SIDSL-KNLEEIILA-SDGAMVARGDL--GAQIPLEQVPSAQQKIVQLCRQL-NKPVIVASQLLESMIE 398 (584)
Q Consensus 326 ~i~IiAKIE--t~~av-~NldeIl~~-sDGImIaRGDL--g~ei~~e~V~~~Qk~II~~c~~~-gKPvivATqmLeSMi~ 398 (584)
+..+++.|- +++-+ +..+.+.+. +|+|-+.=+-- ...-++.+-+..-.++++..++. ++|+++=.
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl-------- 169 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKL-------- 169 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEe--------
Confidence 456777763 23332 233333333 67776632200 00001223456667788877766 89988732
Q ss_pred CCCCChhhHHHHHHH-HHcccceEeecCCC
Q 007936 399 YPTPTRAEVADVSEA-VRQRADALMLSGES 427 (584)
Q Consensus 399 ~p~PTrAEv~Dv~na-v~~G~D~imLs~ET 427 (584)
.+..+..|..+++.+ ...|+|++.+++=+
T Consensus 170 ~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 170 SPYFDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 233455566666664 45699999997543
No 354
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=46.35 E-value=1.6e+02 Score=27.63 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 371 AQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 371 ~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
+..++++.|+++|+++++.|- . +..+...++..|+|+|+-
T Consensus 148 ~~~~~i~~~~~~g~~v~~wtv----------n---~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 148 LTPELVRAAHAAGLKVYVWTV----------N---DPEDARRLLALGVDGIIT 187 (189)
T ss_pred CCHHHHHHHHHcCCEEEEEcC----------C---CHHHHHHHHHCCCCEEec
Confidence 568999999999999999872 1 245667788899999874
No 355
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=46.19 E-value=66 Score=34.42 Aligned_cols=63 Identities=25% Similarity=0.350 Sum_probs=51.6
Q ss_pred CCceEEEecCCCCC----C--------------HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEE
Q 007936 105 RRTKLVCTIGPATC----G--------------FEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAI 166 (584)
Q Consensus 105 r~tKIi~TiGPa~~----~--------------~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I 166 (584)
|++=+.+|+||-.. + .|+++.|++.|+|++-|-..... .+.+..+..+++..++.|..+++
T Consensus 113 k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~-l~~KaA~~a~~~~~~~~~~~LPv 191 (311)
T COG0646 113 KPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDT-LNAKAAVFAAREVFEELGVRLPV 191 (311)
T ss_pred CceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccH-HHHHHHHHHHHHHHHhcCCcccE
Confidence 56778899999652 1 36789999999999999887755 67888999999999999977777
Q ss_pred Ee
Q 007936 167 MM 168 (584)
Q Consensus 167 ~l 168 (584)
|+
T Consensus 192 ~~ 193 (311)
T COG0646 192 MI 193 (311)
T ss_pred EE
Confidence 65
No 356
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=46.07 E-value=1.6e+02 Score=30.96 Aligned_cols=119 Identities=16% Similarity=0.261 Sum_probs=76.2
Q ss_pred CCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe-hhh--hHhhhcCC
Q 007936 325 SDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA-SQL--LESMIEYP 400 (584)
Q Consensus 325 ~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA-Tqm--LeSMi~~p 400 (584)
..++|...+....-.+.+.+-++. .+-||+... .+|+++=...-+++++.|++.|..|=.= -.+ -|.-...-
T Consensus 68 ~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S----~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~ 143 (276)
T cd00947 68 ASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGS----HLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGD 143 (276)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccc
Confidence 358899999887655444444444 679999844 4588888888999999999998876310 000 00000000
Q ss_pred CCChhhHHHHHHHHHc-ccceEeecCCCCCCCChH----HHHHHHHHHHHHH
Q 007936 401 TPTRAEVADVSEAVRQ-RADALMLSGESAMGQFPD----KALTVLRSVSLRI 447 (584)
Q Consensus 401 ~PTrAEv~Dv~nav~~-G~D~imLs~ETa~G~yPv----eaV~~m~~I~~~a 447 (584)
.-......++..++.. |+|++-.|-=|+-|.|+- --.+.|.+|...+
T Consensus 144 ~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~ 195 (276)
T cd00947 144 EGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV 195 (276)
T ss_pred cccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 0001123445666664 999999999999999965 4566666666554
No 357
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.05 E-value=73 Score=33.62 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=49.7
Q ss_pred CHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHH--hcHHHHHHh-CCEEEEeC
Q 007936 285 DWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSL--KNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av--~NldeIl~~-sDGImIaR 356 (584)
..+++..+++.|+|.|.+=.. ++++++++++.++....+.++ +||---|+ +|+.++++. +|+|-+|.
T Consensus 191 ~leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERV----KIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCE----EEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 577788999999999999887 799999999988533222333 35544454 477777777 79998864
No 358
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=46.00 E-value=1.8e+02 Score=30.79 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHH---HHHHHHHHHhhcCCCC--ceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEV---INHLKSYIAARSRDSD--IAVIAKIESIDSLKNLEEIILA-SDGAMVARGDL 359 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saed---V~~lr~~l~~~~~~~~--i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDL 359 (584)
+.-|+.|-+.+...|+--.-...+. ...+..+++....... ++|...+..-..++.+..-++. .+-||+.
T Consensus 32 ~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~D---- 107 (286)
T PRK08610 32 QAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMID---- 107 (286)
T ss_pred HHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEe----
Q ss_pred cccCCCCChHHHHHHHHHHHHHcCCCe--------EEehhhhHhhhcCCCCChhhHHHHHHHHHc-ccceEeecCCCCCC
Q 007936 360 GAQIPLEQVPSAQQKIVQLCRQLNKPV--------IVASQLLESMIEYPTPTRAEVADVSEAVRQ-RADALMLSGESAMG 430 (584)
Q Consensus 360 g~ei~~e~V~~~Qk~II~~c~~~gKPv--------ivATqmLeSMi~~p~PTrAEv~Dv~nav~~-G~D~imLs~ETa~G 430 (584)
|-.+|+|+=...-+++++.|++.|.+| ..-...-..=.....|.-| ..++.. |+|++-.|-=|+-|
T Consensus 108 gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea-----~~Fv~~TgvD~LAvaiGt~HG 182 (286)
T PRK08610 108 ASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKEC-----QELVEKTGIDALAPALGSVHG 182 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHH-----HHHHHHHCCCEEEeecccccc
Q ss_pred CC---hHHHHHHHHHHHHHH
Q 007936 431 QF---PDKALTVLRSVSLRI 447 (584)
Q Consensus 431 ~y---PveaV~~m~~I~~~a 447 (584)
.| |---.+.|.+|..+.
T Consensus 183 ~Y~~~p~Ld~~~L~~I~~~~ 202 (286)
T PRK08610 183 PYKGEPKLGFKEMEEIGLST 202 (286)
T ss_pred ccCCCCCCCHHHHHHHHHHH
No 359
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=45.87 E-value=81 Score=34.28 Aligned_cols=143 Identities=17% Similarity=0.214 Sum_probs=86.3
Q ss_pred HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChH
Q 007936 290 DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVP 369 (584)
Q Consensus 290 ~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~ 369 (584)
+.--+.|+|.|-++ |.+.++...++++-+ . .+++++|-|-----+ -++.+--.+|.+-|.||..|..=
T Consensus 43 ~~L~~aG~dIVRvt-v~~~e~A~A~~~Ik~--~--~~vPLVaDiHf~~rl-a~~~~~~g~~k~RINPGNig~~~------ 110 (361)
T COG0821 43 KALERAGCDIVRVT-VPDMEAAEALKEIKQ--R--LNVPLVADIHFDYRL-ALEAAECGVDKVRINPGNIGFKD------ 110 (361)
T ss_pred HHHHHcCCCEEEEe-cCCHHHHHHHHHHHH--h--CCCCEEEEeeccHHH-HHHhhhcCcceEEECCcccCcHH------
Confidence 33346799986554 455555555554442 1 268999988442100 12222222799999999986543
Q ss_pred HHHHHHHHHHHHcCCCeEEe--hhhhHhh--hcCCCCChhhH-----HHHHHHHHcccceEeecCCCCCCCChHHHHHHH
Q 007936 370 SAQQKIVQLCRQLNKPVIVA--SQLLESM--IEYPTPTRAEV-----ADVSEAVRQRADALMLSGESAMGQFPDKALTVL 440 (584)
Q Consensus 370 ~~Qk~II~~c~~~gKPvivA--TqmLeSM--i~~p~PTrAEv-----~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m 440 (584)
--+.++++|++.|||+=+- .-=||-. .++..||+.-+ ..+.-+-..|++=+.+|--. .-|.++|+.-
T Consensus 111 -~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~---Sdv~~~v~aY 186 (361)
T COG0821 111 -RVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKA---SDVQLMVAAY 186 (361)
T ss_pred -HHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc---CCHHHHHHHH
Confidence 4578999999999996442 2223221 22336676543 23333667889989998544 4577777776
Q ss_pred HHHHHHHh
Q 007936 441 RSVSLRIE 448 (584)
Q Consensus 441 ~~I~~~aE 448 (584)
+.+..+.+
T Consensus 187 r~lA~~~d 194 (361)
T COG0821 187 RLLAKRCD 194 (361)
T ss_pred HHHHHhcC
Confidence 66655444
No 360
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=45.73 E-value=49 Score=36.47 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=46.8
Q ss_pred CHhhhHHhHhcCCCEEEEcCC---------CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCE
Q 007936 285 DWLDIDFGITEGVDFIAISFV---------KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDG 351 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV---------~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDG 351 (584)
+.+|.+.+++.|+|+|.+|.- -+.+-+.++++.+ +.++.||+ --|+.|=.+|+++ +|+
T Consensus 263 ~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~-----~~~~~vi~----dGGIr~G~Dv~KALaLGA~~ 333 (383)
T cd03332 263 HPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAV-----GDRLTVLF----DSGVRTGADIMKALALGAKA 333 (383)
T ss_pred CHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh-----cCCCeEEE----eCCcCcHHHHHHHHHcCCCE
Confidence 467888999999999999853 2455566666555 23466665 2577777777776 799
Q ss_pred EEEeCCcc
Q 007936 352 AMVARGDL 359 (584)
Q Consensus 352 ImIaRGDL 359 (584)
+++||-=|
T Consensus 334 v~iGr~~l 341 (383)
T cd03332 334 VLIGRPYA 341 (383)
T ss_pred EEEcHHHH
Confidence 99988655
No 361
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=45.25 E-value=59 Score=32.64 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=43.2
Q ss_pred EEEeccc-chhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcC-------ceeCCCceeeec
Q 007936 209 TITVNYD-GFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDP-------GLLLPRANLTFW 265 (584)
Q Consensus 209 ~i~v~~~-~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~-------G~l~s~Kgvnf~ 265 (584)
.+.+..+ .+++.+++||.|-+|+ +.|.|.++.++.+.+.+... |.++....||..
T Consensus 23 ~l~i~~~~~~~~~l~~G~SIAvnG--vCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLE 85 (200)
T TIGR00187 23 SLVVNLADHMLDDLELGDSIAVNG--VCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIE 85 (200)
T ss_pred EEEEEeChHHhcccccCCEEEECc--EEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEc
Confidence 4666665 6788999999999987 99999999988887776532 667777778843
No 362
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=44.94 E-value=55 Score=33.56 Aligned_cols=70 Identities=23% Similarity=0.262 Sum_probs=40.7
Q ss_pred HHhHhcCCCEEEEcCCCCH---HHHHHHHHHHHhhcCCCCceEEEe--ecCHHHHhcHHHHHHh-CCEEEEeCCcccccC
Q 007936 290 DFGITEGVDFIAISFVKSA---EVINHLKSYIAARSRDSDIAVIAK--IESIDSLKNLEEIILA-SDGAMVARGDLGAQI 363 (584)
Q Consensus 290 ~~al~~gvD~I~lSfV~sa---edV~~lr~~l~~~~~~~~i~IiAK--IEt~~av~NldeIl~~-sDGImIaRGDLg~ei 363 (584)
+...+.|+|+|.+.--... .+.+.++++-+ .. ..+.||+- |.|. +...+.++. +||||||||=|.-.+
T Consensus 155 ~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~--~~-~~ipIIgNGgI~s~---eda~e~l~~GAd~VmvgR~~l~~~~ 228 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE--EF-NDKIIIGNNSIDDI---ESAKEMLKAGADFVSVARAILKGNV 228 (231)
T ss_pred HHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH--hc-CCCcEEEECCcCCH---HHHHHHHHhCCCeEEEcHhhccCCc
Confidence 4567899999988532221 35555555442 11 13677772 2332 233344444 899999999876655
Q ss_pred CC
Q 007936 364 PL 365 (584)
Q Consensus 364 ~~ 365 (584)
.+
T Consensus 229 ~~ 230 (231)
T TIGR00736 229 EF 230 (231)
T ss_pred Cc
Confidence 43
No 363
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=44.91 E-value=1.8e+02 Score=30.16 Aligned_cols=94 Identities=15% Similarity=0.042 Sum_probs=52.7
Q ss_pred hhhHHhHhcCCCEEEEc------CCCCHHHHHHHHHHHHhhcCCCCceEEEeec---CHHHHhcHHHHHHh-CCEEEEeC
Q 007936 287 LDIDFGITEGVDFIAIS------FVKSAEVINHLKSYIAARSRDSDIAVIAKIE---SIDSLKNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lS------fV~saedV~~lr~~l~~~~~~~~i~IiAKIE---t~~av~NldeIl~~-sDGImIaR 356 (584)
+.++|.++.|+|+|++. +-=|.++-.++.+...+ ..+ .|++.+- +.++++-...--+. +||+|+.+
T Consensus 24 ~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~-~~~---~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~ 99 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSD-ITD---KVIFQVGSLNLEESIELARAAKSFGIYAIASLP 99 (279)
T ss_pred HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHH-HcC---CEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34578889999999873 33455555555544432 223 2777774 33444443333333 79999876
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 357 GDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 357 GDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
-.+-...+.+.+....+.|.+ ..|+++-
T Consensus 100 P~y~~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 100 PYYFPGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred CcCCCCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 544221122344444445544 6888864
No 364
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=44.89 E-value=97 Score=32.38 Aligned_cols=72 Identities=22% Similarity=0.230 Sum_probs=47.6
Q ss_pred CCccCHhhh-HHhHhcC-CCEEEEcCCCCH--HHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeC
Q 007936 281 ISPKDWLDI-DFGITEG-VDFIAISFVKSA--EVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVAR 356 (584)
Q Consensus 281 lt~kD~~dI-~~al~~g-vD~I~lSfV~sa--edV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaR 356 (584)
|.+.+.++. +.++..+ +|.|+++=..+. -|...++.+-+ ....-+.+++ +=-..+|+.++++.+||++|+.
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~--~~~~~Pvllg---gGvt~eNv~e~l~~adGviVgS 228 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKE--TVKDTPVLAG---SGVNLENVEELLSIADGVIVAT 228 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHh--ccCCCeEEEE---CCCCHHHHHHHHhhCCEEEECC
Confidence 667777664 5566666 999999987765 44555554421 1112233444 5556679999999999999986
Q ss_pred C
Q 007936 357 G 357 (584)
Q Consensus 357 G 357 (584)
+
T Consensus 229 ~ 229 (257)
T TIGR00259 229 T 229 (257)
T ss_pred C
Confidence 4
No 365
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=44.87 E-value=2.6e+02 Score=27.55 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=54.8
Q ss_pred CHhhh-HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEee---c----CHHHHhcHHHHHHhCCEEEEeC
Q 007936 285 DWLDI-DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKI---E----SIDSLKNLEEIILASDGAMVAR 356 (584)
Q Consensus 285 D~~dI-~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKI---E----t~~av~NldeIl~~sDGImIaR 356 (584)
|.+.+ +...+.|++.++++-.. +.+...+.+..+ ..+ ++....=| + ..+-++.+++.+.......|
T Consensus 16 ~~~~~~~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~--~~~-~i~~~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~i-- 89 (252)
T TIGR00010 16 DVEEVIERAKAAGVTAVVAVGTD-LEDFLRALELAE--KYP-NVYAAVGVHPLDVDDDTKEDIKELERLAAHPKVVAI-- 89 (252)
T ss_pred CHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHH--HCC-CEEEEEEeCcchhhcCCHHHHHHHHHHccCCCEEEE--
Confidence 34444 44567899998855333 577777777763 223 33333322 1 12233344444332223444
Q ss_pred CcccccCCCCCh-H----HHHHHHHHHHHHcCCCeEEehh
Q 007936 357 GDLGAQIPLEQV-P----SAQQKIVQLCRQLNKPVIVASQ 391 (584)
Q Consensus 357 GDLg~ei~~e~V-~----~~Qk~II~~c~~~gKPvivATq 391 (584)
|..|.+.....- . .+-+.+++.|++.|+||.+.|.
T Consensus 90 GEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~ 129 (252)
T TIGR00010 90 GETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHAR 129 (252)
T ss_pred EecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 566665432111 1 3344567788999999999975
No 366
>PLN02550 threonine dehydratase
Probab=44.86 E-value=1.9e+02 Score=33.83 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+++|.++.+. .|..+-...+...-..|++.++.. ....++.+...+++++ +.+.
T Consensus 171 gvA~aA~~lGika~Iv-----------mP~~tp~~Kv~~~r~~GAeVvl~g------~~~dea~~~A~~la~e-~g~~-- 230 (591)
T PLN02550 171 GVALSAQRLGCDAVIA-----------MPVTTPEIKWQSVERLGATVVLVG------DSYDEAQAYAKQRALE-EGRT-- 230 (591)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeC------CCHHHHHHHHHHHHHh-cCCE--
Confidence 4566899999998886 344443444555567899777652 3345666665555433 1111
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHHHHHh----ccCCCCcEEEEcCchh
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTTS 523 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~~ 523 (584)
..++... + .....-..-+.|+.+++. .++|||..-+|.++.-++ .++|...||+|-+...
T Consensus 231 -------fi~pfdd--p-~viaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a 296 (591)
T PLN02550 231 -------FIPPFDH--P-DVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDA 296 (591)
T ss_pred -------EECCCCC--h-HHHHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1111111 1 222333555778888875 699999999998876555 4679999999998643
No 367
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=44.74 E-value=3.8e+02 Score=28.84 Aligned_cols=125 Identities=12% Similarity=0.162 Sum_probs=65.8
Q ss_pred CCCccCHhhh--------HHhHhcCCCEEEEcCC-------------CCH------------HHHHHHHHHHHhhcCCCC
Q 007936 280 TISPKDWLDI--------DFGITEGVDFIAISFV-------------KSA------------EVINHLKSYIAARSRDSD 326 (584)
Q Consensus 280 ~lt~kD~~dI--------~~al~~gvD~I~lSfV-------------~sa------------edV~~lr~~l~~~~~~~~ 326 (584)
.+|..|++.+ +.+.+.|+|+|=+.+- +.. .-+.++.+.++ +..+.+
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air-~~vg~d 219 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVA-EAIGAD 219 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHH-HHhCCC
Confidence 4666666665 4667789999977433 222 22333333332 123444
Q ss_pred ceEEEeecCHHH---------HhcHHHHHH----h-CCEEEEeCCcccccCCCCChHHHHHHHHHHHH-HcCCCeEEehh
Q 007936 327 IAVIAKIESIDS---------LKNLEEIIL----A-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCR-QLNKPVIVASQ 391 (584)
Q Consensus 327 i~IiAKIEt~~a---------v~NldeIl~----~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~-~~gKPvivATq 391 (584)
.|..||-..+. .+...+|++ . .|.|=|..|...... ...+-...+..+ ..++||+....
T Consensus 220 -~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-----~~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 220 -RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-----EDQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred -ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----cccchHHHHHHHHHcCCCEEEECC
Confidence 48888843221 111222322 2 588888666543222 122223333333 34899998643
Q ss_pred hhHhhhcCCCCChhhHHHHHHHHHcc-cceEeec
Q 007936 392 LLESMIEYPTPTRAEVADVSEAVRQR-ADALMLS 424 (584)
Q Consensus 392 mLeSMi~~p~PTrAEv~Dv~nav~~G-~D~imLs 424 (584)
. + ..+...++..| +|.|+++
T Consensus 294 ---------i-~---~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 294 ---------Y-D---AESAEAALADGKADLVAFG 314 (338)
T ss_pred ---------C-C---HHHHHHHHHcCCCCEEEeC
Confidence 1 1 22335677766 9999997
No 368
>PRK07048 serine/threonine dehydratase; Validated
Probab=44.74 E-value=1.7e+02 Score=30.85 Aligned_cols=119 Identities=17% Similarity=0.269 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+.+|.|+.+- .|..+.-..+...-..|++.+...+ +..++.+...++.++-
T Consensus 86 alA~~a~~~G~~~~vv-----------vp~~~~~~k~~~~~~~GAeV~~~~~------~~~~~~~~a~~l~~~~------ 142 (321)
T PRK07048 86 AIALSARLLGIPATIV-----------MPQDAPAAKVAATRGYGGEVVTYDR------YTEDREEIGRRLAEER------ 142 (321)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECC------CHHHHHHHHHHHHHhc------
Confidence 4566899999999876 2322222234555567999877653 2334444333322110
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhc-CCcEEEEccCCchHHHHHhcc----CCCCcEEEEcCch
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNL-EVDALFVYTKTGHMASLLSRC----RPDCPIFAFTSTT 522 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l-~a~aIvv~T~sG~tA~~lSr~----RP~~PIiavT~~~ 522 (584)
..+...+... + ........-+.|+.+++ ..+.||+..-+|.|..-++++ .|.+.|+++-+..
T Consensus 143 ----g~~~~~~~~~--~-~~~~g~~t~~~EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~ 209 (321)
T PRK07048 143 ----GLTLIPPYDH--P-HVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEA 209 (321)
T ss_pred ----CCEEECCCCC--c-chhhccchHHHHHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 1111111111 1 11111223345555555 479999999999997766655 7999999999864
No 369
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=44.73 E-value=2.6e+02 Score=29.29 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChhhHHHHHH-HHHcccceEeecC
Q 007936 368 VPSAQQKIVQLCRQL-NKPVIVASQLLESMIEYPTPTRAEVADVSE-AVRQRADALMLSG 425 (584)
Q Consensus 368 V~~~Qk~II~~c~~~-gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av~~G~D~imLs~ 425 (584)
-+..-.+|++..++. ++|+.+= -+|...++.+++. +...|+|++.+++
T Consensus 152 ~~~~~~~iv~~v~~~~~~Pv~vK----------l~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 152 DPELVEEICRWVREAVKIPVIAK----------LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEE----------CCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 356667788888754 7999874 2455556666666 6677999999764
No 370
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=44.16 E-value=1.2e+02 Score=30.03 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 312 NHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 312 ~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+.+++.+ ++.|.++.|-+.-+... ++.++.++-.|.|+.+..+ +..+.++-+.|+++|+|.+.+
T Consensus 78 ~a~~~~L--~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 78 EASLERL--RALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHHH--HHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 4445555 34466666655444443 5567778888988876433 356777889999999999876
No 371
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=43.64 E-value=21 Score=26.85 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=19.6
Q ss_pred cCCEEEEeCC-CCCHHHHHHHHHHHH
Q 007936 130 GMNVARINMC-HGTREWHRRVIERVR 154 (584)
Q Consensus 130 Gm~v~RiN~s-Hg~~e~~~~~i~~ir 154 (584)
-|.|.+++|| |++.++..++++.++
T Consensus 6 ~a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 6 RARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp -SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEEeecCCCCHHHHHHHHHhcC
Confidence 3678899997 999999888888874
No 372
>PRK08185 hypothetical protein; Provisional
Probab=43.60 E-value=3.6e+02 Score=28.58 Aligned_cols=118 Identities=14% Similarity=0.230 Sum_probs=78.5
Q ss_pred CCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCC--C
Q 007936 325 SDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYP--T 401 (584)
Q Consensus 325 ~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p--~ 401 (584)
..+++...+.....++.+..-++. .+.||+.-.+| |+++-...-+++++.|+++|.+|=.-=-.+-.=.... .
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l----~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLL----PYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 357899999888766666655555 57899986655 8888888999999999999999732211110000000 0
Q ss_pred CC---hhhHHHHHHHHHc-ccceEeecCCCCCCCChH-----HHHHHHHHHHHH
Q 007936 402 PT---RAEVADVSEAVRQ-RADALMLSGESAMGQFPD-----KALTVLRSVSLR 446 (584)
Q Consensus 402 PT---rAEv~Dv~nav~~-G~D~imLs~ETa~G~yPv-----eaV~~m~~I~~~ 446 (584)
.. .....+...++.. |+|++-.|-=|+-|.||- --++.+.+|...
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~ 196 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINER 196 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHh
Confidence 00 1123344778877 999999999999999965 345666666543
No 373
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=43.42 E-value=41 Score=30.11 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=32.7
Q ss_pred ccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeC
Q 007936 214 YDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLL 257 (584)
Q Consensus 214 ~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~ 257 (584)
++++.+.++.||+|..-.| +.=+|+++.++.++.++-.+..++
T Consensus 37 ~~~ml~sL~kGD~VvT~gG-i~G~V~~v~d~~v~I~l~~~~~i~ 79 (97)
T COG1862 37 HQELLNSLKKGDEVVTIGG-IVGTVTKVGDDTVEIELGDGTKIK 79 (97)
T ss_pred HHHHHHhccCCCEEEEcCC-eEEEEEEEecCcEEEEECCCeEEE
Confidence 4568899999999999888 667888888888666555444443
No 374
>PRK10425 DNase TatD; Provisional
Probab=43.41 E-value=2.4e+02 Score=29.17 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=58.9
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhc-----CCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccc
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARS-----RDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGA 361 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~-----~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ 361 (584)
+-++.+.+.|+..++..-+. .++..+++++.+... .|-++.-+ .--+.+.++.++++++.-. ++|=|..|.
T Consensus 19 ~vl~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~~~v~~~~GiHP~~~-~~~~~~~~~~l~~~~~~~~--~vaIGEiGL 94 (258)
T PRK10425 19 DVVARAFAAGVNGMLITGTN-LRESQQAQKLARQYPSCWSTAGVHPHDS-SQWQAATEEAIIELAAQPE--VVAIGECGL 94 (258)
T ss_pred HHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHhCCCEEEEEEeCcCcc-ccCCHHHHHHHHHhccCCC--EEEEeeeee
Confidence 34567778898887777664 777777777774211 11122111 1112344555666654333 345567777
Q ss_pred cCCCC-ChHHHH----HHHHHHHHHcCCCeEEeh
Q 007936 362 QIPLE-QVPSAQ----QKIVQLCRQLNKPVIVAS 390 (584)
Q Consensus 362 ei~~e-~V~~~Q----k~II~~c~~~gKPvivAT 390 (584)
+.... .-...| ++.++.|.++++|+++.+
T Consensus 95 Dy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 95 DFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHC 128 (258)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 76531 234456 456788999999999985
No 375
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=43.41 E-value=48 Score=29.98 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=32.3
Q ss_pred cchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeC
Q 007936 215 DGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLL 257 (584)
Q Consensus 215 ~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~ 257 (584)
.++.+.+++||+|..-.| +.=+|.+++++.+..++-.|..++
T Consensus 47 ~~~~~~Lk~Gd~VvT~gG-i~G~Vv~i~~~~v~lei~~g~~i~ 88 (106)
T PRK05585 47 KKMLSSLAKGDEVVTNGG-IIGKVTKVSEDFVIIELNDDTEIK 88 (106)
T ss_pred HHHHHhcCCCCEEEECCC-eEEEEEEEeCCEEEEEECCCeEEE
Confidence 568889999999999888 556777888888887775544443
No 376
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=43.38 E-value=1.6e+02 Score=32.46 Aligned_cols=126 Identities=11% Similarity=0.149 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+..|.++++. .|..+.-..+.+.-..|++.+...+ ...+++..+.++.++- .|+.-
T Consensus 130 alA~~a~~~G~~~~Iv-----------vp~~~~~~k~~~i~~~GA~Vi~v~~------~~~~~~~~a~~~~~~~-g~~~v 191 (399)
T PRK08206 130 GVAWAAQQLGQKAVIY-----------MPKGSSEERVDAIRALGAECIITDG------NYDDSVRLAAQEAQEN-GWVVV 191 (399)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC------CHHHHHHHHHHHHHHc-CCEEe
Confidence 4567899999999986 4555555556677788999666542 3456666666554321 11100
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC-----CcEEEEccCCchHHHHHhcc-----CC-CCcEEEEcCch
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE-----VDALFVYTKTGHMASLLSRC-----RP-DCPIFAFTSTT 522 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~-----a~aIvv~T~sG~tA~~lSr~-----RP-~~PIiavT~~~ 522 (584)
. . ....+. ...+..+.+.....+.|+.++++ .++||+.+-+|.++.-++++ ++ .+.|++|-+..
T Consensus 192 ~---~-~~~~~~-~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~g 266 (399)
T PRK08206 192 Q---D-TAWEGY-EEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQ 266 (399)
T ss_pred c---C-ccccCc-ccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCC
Confidence 0 0 000011 00111223344455666666663 69999999999988766533 23 56699988753
No 377
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=43.36 E-value=54 Score=35.07 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=36.8
Q ss_pred hHHhHhcCCCEEEEcCCCCH---------------HHHHHHHHHHHhhcCCCCceEEE--eecCHHHHhcHHHHHHhCCE
Q 007936 289 IDFGITEGVDFIAISFVKSA---------------EVINHLKSYIAARSRDSDIAVIA--KIESIDSLKNLEEIILASDG 351 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~sa---------------edV~~lr~~l~~~~~~~~i~IiA--KIEt~~av~NldeIl~~sDG 351 (584)
++...+.|+|.|.+. -|++ .+...++++-+ .. .++.||+ -|.|.+ +..+.+.-+||
T Consensus 147 ~~~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk~--~~-~~ipVi~NGdI~s~~---da~~~l~g~dg 219 (318)
T TIGR00742 147 VEIVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLKK--DF-PHLTIEINGGIKNSE---QIKQHLSHVDG 219 (318)
T ss_pred HHHHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHHH--hC-CCCcEEEECCcCCHH---HHHHHHhCCCE
Confidence 455668999988765 3443 13333433321 11 2466665 233333 33344445999
Q ss_pred EEEeCCccc
Q 007936 352 AMVARGDLG 360 (584)
Q Consensus 352 ImIaRGDLg 360 (584)
||||||=|+
T Consensus 220 VMigRgal~ 228 (318)
T TIGR00742 220 VMVGREAYE 228 (318)
T ss_pred EEECHHHHh
Confidence 999999885
No 378
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.07 E-value=77 Score=32.78 Aligned_cols=70 Identities=23% Similarity=0.389 Sum_probs=43.6
Q ss_pred eEEEeecCHHHHhcHHHHHHh-----CCEEEEeCCcccccCCCCChHHHHHHHHHHHH-HcCCCeEEehhhhHhhhcCCC
Q 007936 328 AVIAKIESIDSLKNLEEIILA-----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCR-QLNKPVIVASQLLESMIEYPT 401 (584)
Q Consensus 328 ~IiAKIEt~~av~NldeIl~~-----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~-~~gKPvivATqmLeSMi~~p~ 401 (584)
.=+.||.=-+. ++.+||++. .|+|||| |-++++. ..-...+++++ +.+.|||+-
T Consensus 17 ~H~tliDP~k~-~~~~ei~~~~~~~GTDaImIG-GS~gvt~------~~~~~~v~~ik~~~~lPvilf------------ 76 (240)
T COG1646 17 RHLTLIDPDKT-EEADEIAEAAAEAGTDAIMIG-GSDGVTE------ENVDNVVEAIKERTDLPVILF------------ 76 (240)
T ss_pred eEEEEeCcccc-cccHHHHHHHHHcCCCEEEEC-CcccccH------HHHHHHHHHHHhhcCCCEEEe------------
Confidence 44566643332 666666655 6999998 4443332 34456777888 899999973
Q ss_pred CChhhHHHHHHHHHcccceEee
Q 007936 402 PTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 402 PTrAEv~Dv~nav~~G~D~imL 423 (584)
|.-- +-+..++|+++.
T Consensus 77 P~~~------~~is~~aDavff 92 (240)
T COG1646 77 PGSP------SGISPYADAVFF 92 (240)
T ss_pred cCCh------hccCccCCeEEE
Confidence 3332 223458998865
No 379
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=43.03 E-value=1.8e+02 Score=30.82 Aligned_cols=119 Identities=16% Similarity=0.247 Sum_probs=74.6
Q ss_pred CCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe-hhhh--HhhhcCC
Q 007936 325 SDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA-SQLL--ESMIEYP 400 (584)
Q Consensus 325 ~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA-TqmL--eSMi~~p 400 (584)
.+++|...+.....++.+..-+.. .+.||+.-. .+|+++=...-+++++.|++.|..|=.= -++- |..+.+.
T Consensus 72 ~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS----~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~ 147 (287)
T PF01116_consen 72 ASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGS----ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESE 147 (287)
T ss_dssp STSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-T----TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSS
T ss_pred cCCCEEeecccCCCHHHHHHHHHhCcccccccCC----cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCcccc
Confidence 358999999888877666666655 789999744 5688888888999999999999876321 0110 1111111
Q ss_pred CC---ChhhHHHHHHHH-HcccceEeecCCCCCCCChH-----HHHHHHHHHHHHH
Q 007936 401 TP---TRAEVADVSEAV-RQRADALMLSGESAMGQFPD-----KALTVLRSVSLRI 447 (584)
Q Consensus 401 ~P---TrAEv~Dv~nav-~~G~D~imLs~ETa~G~yPv-----eaV~~m~~I~~~a 447 (584)
.- ...+-.++..++ .-|+|++-.|-=|+-|.|+- -=++.|.+|.+.+
T Consensus 148 ~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 148 EETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp TT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
Confidence 00 001123334454 56999999999999999987 3466666665555
No 380
>PLN02535 glycolate oxidase
Probab=42.90 E-value=2.2e+02 Score=31.22 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCC
Q 007936 383 NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGES 427 (584)
Q Consensus 383 gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ET 427 (584)
..|+|...-+- .-.||..|+..|||++++..--
T Consensus 278 ~ipVi~dGGIr------------~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 278 RVPVLLDGGVR------------RGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred CCCEEeeCCCC------------CHHHHHHHHHcCCCEEEECHHH
Confidence 58888764322 3479999999999999986543
No 381
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=42.82 E-value=2.9e+02 Score=31.09 Aligned_cols=242 Identities=15% Similarity=0.173 Sum_probs=118.9
Q ss_pred eEEEeecCCCeEEEeecCCCCceEeeCC----CEEEEeecccCCCCCCCEEEecccchhcccCCCCEEEEeCCeeEEEEE
Q 007936 164 VAIMMDTEGSEIHMGDLSGPPSARAEDG----EIWTFTVRAFDSPRPERTITVNYDGFAEDVKVGDELLVDGGMVRFEVI 239 (584)
Q Consensus 164 i~I~lDl~GpkIR~G~~~~~~~i~l~~G----~~v~~t~~~~~~~~~~~~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~ 239 (584)
.+.++.-.||..++|++ ..+..| +.+.|.. +...-+.+. =.+.+++|+.|..-+....+.|
T Consensus 29 ~g~~~~~~g~~~~ige~-----~~i~~~~~~~eV~~~~~--------~~~~~~~~~-~~~gi~~g~~v~~~~~~~~v~v- 93 (432)
T PRK06793 29 QEQFFVAKGPKAKIGDV-----CFVGEHNVLCEVIAIEK--------ENNMLLPFE-QTEKVCYGDSVTLIAEDVVIPR- 93 (432)
T ss_pred EEEEEEEEcCCCCcCCE-----EEECCCCEEEEEEEecC--------CcEEEEEcc-CccCCCCCCEEEECCCccEEEc-
Confidence 47788888888888866 222222 2222221 122223322 2456899999998877666654
Q ss_pred EEeCCeEEEEEEcC-ceeCCCceeeeccCCcccCCccccCCCCCccCHhhhHHhHhcCC-------------CEEEEcCC
Q 007936 240 EKIGPDVKCRCTDP-GLLLPRANLTFWRDGSLVRERNAMLPTISPKDWLDIDFGITEGV-------------DFIAISFV 305 (584)
Q Consensus 240 ~~~~~~i~c~v~~~-G~l~s~Kgvnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~~gv-------------D~I~lSfV 305 (584)
++.+-.+|.++ |.--..++-... .....+.-|++...++..+...+..|+ -+.++.-.
T Consensus 94 ---g~~~lGrV~d~~G~piD~~~~~~~-----~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~s 165 (432)
T PRK06793 94 ---GNHLLGKVLSANGEVLNEEAENIP-----LQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGS 165 (432)
T ss_pred ---CHhhccCEECcCCccCCCCCCCCC-----cccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCC
Confidence 34455556654 443332221100 000112222322233333332233222 22333323
Q ss_pred CCHHHHHHHHHHHHhhcCCCCceEEEee-cC-HHHHhcHHHHHHhC---C-EEEEeCCcccccCCCCChHHHHHHHHHHH
Q 007936 306 KSAEVINHLKSYIAARSRDSDIAVIAKI-ES-IDSLKNLEEIILAS---D-GAMVARGDLGAQIPLEQVPSAQQKIVQLC 379 (584)
Q Consensus 306 ~saedV~~lr~~l~~~~~~~~i~IiAKI-Et-~~av~NldeIl~~s---D-GImIaRGDLg~ei~~e~V~~~Qk~II~~c 379 (584)
.+.+... ++.++ ........+|+-| |. .+.-+.+...+... . .++++..|-..-+ --+.+.+.-.|.+..
T Consensus 166 G~GKTtL-l~~Ia--~~~~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~-r~ra~~~a~~iAEyf 241 (432)
T PRK06793 166 GVGKSTL-LGMIA--KNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLM-QLRAAKLATSIAEYF 241 (432)
T ss_pred CCChHHH-HHHHh--ccCCCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHH-HHHHHHHHHHHHHHH
Confidence 3333222 22222 1222234566655 22 22223344444331 1 3555544442211 025666667777778
Q ss_pred HHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhh
Q 007936 380 RQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEK 449 (584)
Q Consensus 380 ~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~ 449 (584)
+..|++|.+ +|+||.....+-| | +.. +.+|...+-||.-....|.++++++-+
T Consensus 242 r~~G~~VLl---ilDslTr~a~A~r-e---isl----------~~~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 242 RDQGNNVLL---MMDSVTRFADARR-S---VDI----------AVKELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred HHcCCcEEE---EecchHHHHHHHH-H---HHH----------HhcCCCCCCeeeeeeccchhHHHHhcc
Confidence 888999998 6888766555532 1 211 245666667777665667888888765
No 382
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=42.77 E-value=70 Score=33.67 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=48.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCce
Q 007936 107 TKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAV 164 (584)
Q Consensus 107 tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i 164 (584)
..+..-+ ..+.+.+.+++.+++|.+.+-|.-||-+.++..+.-+.++++..++|.++
T Consensus 75 vpv~lHl-DH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 75 VPVAVHF-DHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred CCEEEEC-CCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3444444 56678999999999999999999999999999999999999998888663
No 383
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=42.70 E-value=51 Score=32.09 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=45.0
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHH--hcHHHHHHh-CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSL--KNLEEIILA-SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av--~NldeIl~~-sDGImIa 355 (584)
.+.+..+++.|+|.|.+=.- ++++++++.+.++.. +.+ .+||---|+ +|+.++.+. +|+|-+|
T Consensus 90 ~ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~--~~~----v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDNM-SPEDLKEAVEELREL--NPR----VKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHH--TTT----SEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhc--CCc----EEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 56678899999999999886 779999999988532 333 444444444 588888877 6999886
No 384
>PRK05638 threonine synthase; Validated
Probab=42.57 E-value=1.8e+02 Score=32.32 Aligned_cols=118 Identities=10% Similarity=0.091 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 373 QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 373 k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
.-+...|+++|.|+.+- .|..+....+...-..|++.+... |. ..++++...+++.+ +.++
T Consensus 125 ~alA~~aa~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~vi~v~-----~~-~~~~~~~a~~~~~~-~~~~- 185 (442)
T PRK05638 125 ASVAAYSARAGKEAFVV-----------VPRKVDKGKLIQMIAFGAKIIRYG-----ES-VDEAIEYAEELARL-NGLY- 185 (442)
T ss_pred HHHHHHHHHcCCCEEEE-----------EeCCCCHHHHHHHHhcCcEEEEEC-----CC-HHHHHHHHHHHHHh-CCeE-
Confidence 34567899999999986 465555666777778899988874 23 35677666655332 1121
Q ss_pred hhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCCchHHHHHhcc----CC-----C-CcEEEEcC
Q 007936 453 EEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLEVDALFVYTKTGHMASLLSRC----RP-----D-CPIFAFTS 520 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~sG~tA~~lSr~----RP-----~-~PIiavT~ 520 (584)
...+.. .+ ...+....-+.|++++++.+.||+.+-+|.+..-+++. +| + ..|+++-+
T Consensus 186 --------~~~~~~--np-~~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~ 252 (442)
T PRK05638 186 --------NVTPEY--NI-IGLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQT 252 (442)
T ss_pred --------ecCCCC--Ch-hHhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEec
Confidence 111111 11 12233345566778888899999999999998665543 34 2 35888876
No 385
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.53 E-value=1.1e+02 Score=32.29 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=45.4
Q ss_pred CHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHH--HhcHHHHHHh-CCEEEEeC
Q 007936 285 DWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDS--LKNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~a--v~NldeIl~~-sDGImIaR 356 (584)
..++...+++.|+|+|.+-.. +.++++++.+.++ ....++.+.| --+ .+|+.++++. +|+|-+|.
T Consensus 191 tleea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~--~~~~~~~ieA----sGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRN--ANYPHVLLEA----SGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhh--ccCCCeEEEE----ECCCCHHHHHHHHHcCCCEEEeCh
Confidence 467778899999999999875 7888888888763 2123344333 233 3466667766 89999874
No 386
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.27 E-value=3.9e+02 Score=27.18 Aligned_cols=52 Identities=12% Similarity=0.293 Sum_probs=33.4
Q ss_pred EEEeecCHHHHhcHHHHHHh-----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 329 VIAKIESIDSLKNLEEIILA-----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 329 IiAKIEt~~av~NldeIl~~-----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
+++++-- -+.|.++.++. +||+.+- ++|+|-. .-.+++++.|+++|..++++
T Consensus 79 lM~y~n~--~~~~~~~~i~~~~~~Gadgvii~------dlp~e~~-~~~~~~~~~~~~~Gl~~~~~ 135 (244)
T PRK13125 79 LMTYLED--YVDSLDNFLNMARDVGADGVLFP------DLLIDYP-DDLEKYVEIIKNKGLKPVFF 135 (244)
T ss_pred EEEecch--hhhCHHHHHHHHHHcCCCEEEEC------CCCCCcH-HHHHHHHHHHHHcCCCEEEE
Confidence 3465543 14455554433 6999982 3355432 34567999999999999987
No 387
>PLN02979 glycolate oxidase
Probab=42.13 E-value=1.5e+02 Score=32.68 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCC-ceEEEeecCCCeEEEeecC
Q 007936 115 PATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGF-AVAIMMDTEGSEIHMGDLS 181 (584)
Q Consensus 115 Pa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~-~i~I~lDl~GpkIR~G~~~ 181 (584)
-++.+.|.+.+- ..|---|-+= -+.+++..+++++..++ .|+ .+.+-+|++.+--|.-+..
T Consensus 107 ~ss~slEeIa~a-~~~~~wfQLY-~~~Dr~~~~~ll~RA~~----aG~~AlvlTVD~pv~G~R~rd~r 168 (366)
T PLN02979 107 WATSSVEEVAST-GPGIRFFQLY-VYKNRNVVEQLVRRAER----AGFKAIALTVDTPRLGRRESDIK 168 (366)
T ss_pred CcCCCHHHHHhc-cCCCeEEEEe-ecCCHHHHHHHHHHHHH----cCCCEEEEEecCCCCCCchhhhc
Confidence 466677777653 2233334332 34455555555444433 364 4788889887766654443
No 388
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=41.93 E-value=3.9e+02 Score=27.47 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=51.6
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEE
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMV 354 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImI 354 (584)
...+..-.+.|+|+|.+-+ +...++.++-+++ ++.|-...+.-+=+|+ ++.++.++..+|.|++
T Consensus 74 ~~~i~~fa~agad~It~H~-E~~~~~~r~i~~I--k~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll 137 (220)
T COG0036 74 DRYIEAFAKAGADIITFHA-EATEHIHRTIQLI--KELGVKAGLVLNPATP--LEALEPVLDDVDLVLL 137 (220)
T ss_pred HHHHHHHHHhCCCEEEEEe-ccCcCHHHHHHHH--HHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE
Confidence 4556666899999998854 6778899999999 4556677888888886 5669999999999988
No 389
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=41.91 E-value=2.9e+02 Score=29.27 Aligned_cols=156 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCH--HHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCccccc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSA--EVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQ 362 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~sa--edV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~e 362 (584)
+.-|+.|-+.+...|+.-.-... -....+..+++..-.+..++|...+..-..++.+.+=++. .+-||+. |-+
T Consensus 30 ~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~ 105 (282)
T TIGR01858 30 QAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMID----GSH 105 (282)
T ss_pred HHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeec----CCC
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCe--------EEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCC--
Q 007936 363 IPLEQVPSAQQKIVQLCRQLNKPV--------IVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQF-- 432 (584)
Q Consensus 363 i~~e~V~~~Qk~II~~c~~~gKPv--------ivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~y-- 432 (584)
+|+|+=...-+++++.|++.|.+| ..-..+.........-+.+|+.+..+.. |+|++-.+-=|+-|.|
T Consensus 106 lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T--gvD~LAvaiGt~HG~yk~ 183 (282)
T TIGR01858 106 FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEAT--GVDSLAVAIGTAHGLYKK 183 (282)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHH--CcCEEecccCccccCcCC
Q ss_pred -hHHHHHHHHHHHHHH
Q 007936 433 -PDKALTVLRSVSLRI 447 (584)
Q Consensus 433 -PveaV~~m~~I~~~a 447 (584)
|.--.+.|.+|..+.
T Consensus 184 ~p~Ldf~~L~~I~~~~ 199 (282)
T TIGR01858 184 TPKLDFDRLAEIREVV 199 (282)
T ss_pred CCccCHHHHHHHHHHh
No 390
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=41.83 E-value=44 Score=37.24 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=41.7
Q ss_pred EecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHH
Q 007936 111 CTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRL 156 (584)
Q Consensus 111 ~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~ 156 (584)
+.||-.-.+.+.|.-|.++|+|+.=|+-|.|+..+..++|+.||+.
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 5577777788899999999999999999999999999999999974
No 391
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=41.70 E-value=23 Score=37.09 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=32.0
Q ss_pred hhcCCcEEEEccCCchHHHHHhcc----CCCCcEEEEcCc
Q 007936 486 NNLEVDALFVYTKTGHMASLLSRC----RPDCPIFAFTST 521 (584)
Q Consensus 486 ~~l~a~aIvv~T~sG~tA~~lSr~----RP~~PIiavT~~ 521 (584)
.+..+|.++|-|.+|+||-.+|.- .|..+.|++||-
T Consensus 162 ~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi 201 (281)
T COG0061 162 ESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPI 201 (281)
T ss_pred EEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEeec
Confidence 466899999999999999999974 678999999995
No 392
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=41.61 E-value=1e+02 Score=32.27 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=45.4
Q ss_pred cCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHH--hcHHHHHHh-CCEEEEeC
Q 007936 284 KDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSL--KNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av--~NldeIl~~-sDGImIaR 356 (584)
...+++..+++.|+|+|.+..+ .+++++++.+.++ ....+++++| .-|+ +|+.++++. +|+|.++.
T Consensus 191 ~t~eea~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~--~~~~~i~i~A----sGGI~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 191 DSLEEALAAAEAGADILQLDKF-SPEELAELVPKLR--SLAPPVLLAA----AGGINIENAAAYAAAGADILVTSA 259 (272)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHh--ccCCCceEEE----ECCCCHHHHHHHHHcCCcEEEECh
Confidence 4457777889999999999766 4467777777663 2212355444 2333 788888888 89997753
No 393
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=41.59 E-value=59 Score=33.08 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=50.2
Q ss_pred HhhhHHhHhcCCCEEEEcCCCC-----HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHH---HHh--CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAISFVKS-----AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEI---ILA--SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~s-----aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeI---l~~--sDGImIa 355 (584)
.+.++...+.|++.|++.-+.. .-|...++++.+ . ..+++|+- -++.+.+++ ++. +||+|+|
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~--~--~~ipvia~----GGv~s~~d~~~~~~~~G~~gvivg 227 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSD--A--VNVPVIAS----GGAGNLEHFVEAFTEGGADAALAA 227 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHh--h--CCCCEEEE----CCCCCHHHHHHHHHhCCccEEeEh
Confidence 3445667788999887754332 123333444332 1 13566652 345555555 433 7999999
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHcCCCe
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPV 386 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPv 386 (584)
+....-.+++++ +...|++.|.++
T Consensus 228 ~al~~~~~~~~~-------~~~~~~~~~~~~ 251 (253)
T PRK02083 228 SIFHFGEITIGE-------LKAYLAEQGIPV 251 (253)
T ss_pred HHHHcCCCCHHH-------HHHHHHHCCCcc
Confidence 887766666554 455666677765
No 394
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=41.54 E-value=40 Score=38.09 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=40.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHH
Q 007936 107 TKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRL 156 (584)
Q Consensus 107 tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~ 156 (584)
..+=+-+|.+....+.++.|+++|+++.=|..+||..+...+++++||+.
T Consensus 214 l~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~ 263 (475)
T TIGR01303 214 LRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRAL 263 (475)
T ss_pred ceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 33444556666678999999999999999999999998888888888863
No 395
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.51 E-value=68 Score=33.77 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=47.0
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEE--eecCHHHHhcHHHHHHh-CCEEEEeC
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIA--KIESIDSLKNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiA--KIEt~~av~NldeIl~~-sDGImIaR 356 (584)
+-.+.+++..+.+.|+|||.+.. -+.++++++++.+. ..+.+.| -| -.+|+.++++. +|+|-++.
T Consensus 194 sv~tleea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~-----~~i~i~AiGGI----t~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 194 ETETEEQVREAVAAGADIIMFDN-RTPDEIREFVKLVP-----SAIVTEASGGI----TLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHhcC-----CCceEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 45677888899999999999975 67788888887661 2233222 23 24688888887 89999874
No 396
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=41.42 E-value=5.3e+02 Score=28.54 Aligned_cols=149 Identities=15% Similarity=0.322 Sum_probs=86.2
Q ss_pred CccCHhhhHHh-HhcCCCEEEEcC----C-----------CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHH
Q 007936 282 SPKDWLDIDFG-ITEGVDFIAISF----V-----------KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEI 345 (584)
Q Consensus 282 t~kD~~dI~~a-l~~gvD~I~lSf----V-----------~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeI 345 (584)
++.|+.++..- -+.|+|+|-+.| + ++++.+.++-+.++.. .++++++||= +. +.++.++
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~---~~iPv~vKLs-Pn-~t~i~~i 199 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK---ATVPVWAKMT-PN-ITDITQP 199 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh---hcCceEEEeC-CC-hhhHHHH
Confidence 56777766543 456899987755 2 4566676666666321 2589999995 32 3346666
Q ss_pred HHh-----CCEEEEeCC--c-ccc--cC--C------------CC---ChHHHHHHHHHHHHHc------CCCeEEehhh
Q 007936 346 ILA-----SDGAMVARG--D-LGA--QI--P------------LE---QVPSAQQKIVQLCRQL------NKPVIVASQL 392 (584)
Q Consensus 346 l~~-----sDGImIaRG--D-Lg~--ei--~------------~e---~V~~~Qk~II~~c~~~------gKPvivATqm 392 (584)
+++ +|||..-=- . +++ +. | +. --|.+...+-+.+++. +.|+|-..-+
T Consensus 200 a~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI 279 (385)
T PLN02495 200 ARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGV 279 (385)
T ss_pred HHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCC
Confidence 654 687765210 0 111 10 0 00 1233444333333333 4677765433
Q ss_pred hHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCC-hHHHHHHHHHHHHHHhhhhhh
Q 007936 393 LESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQF-PDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 393 LeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~y-PveaV~~m~~I~~~aE~~~~~ 453 (584)
. --.|++.+++.|||+|.+. |+.-.+ | .++.+|+++.++|+.+
T Consensus 280 ~------------s~~Da~e~i~aGAs~VQv~--Ta~~~~Gp----~vi~~i~~~L~~~m~~ 323 (385)
T PLN02495 280 E------------TGGDAAEFILLGADTVQVC--TGVMMHGY----PLVKNLCAELQDFMKK 323 (385)
T ss_pred C------------CHHHHHHHHHhCCCceeEe--eeeeecCc----HHHHHHHHHHHHHHHH
Confidence 2 3578999999999999997 444445 4 3556677777776643
No 397
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=41.26 E-value=3.8e+02 Score=26.85 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=67.8
Q ss_pred CHhhhHHhHhcCCCEEEEcC--CCCHHHHHHHHHHHHhhcCCCC-ce--EEEee---------------cCH-HHHhcHH
Q 007936 285 DWLDIDFGITEGVDFIAISF--VKSAEVINHLKSYIAARSRDSD-IA--VIAKI---------------ESI-DSLKNLE 343 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSf--V~saedV~~lr~~l~~~~~~~~-i~--IiAKI---------------Et~-~av~Nld 343 (584)
+.+|++..++.|+|.|++.. .++++.+.++.+.+ +.+ +. +=+|+ ++. +.++-+.
T Consensus 82 s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~-----~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~ 156 (243)
T cd04731 82 SLEDARRLLRAGADKVSINSAAVENPELIREIAKRF-----GSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAK 156 (243)
T ss_pred CHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHc-----CCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHH
Confidence 45677777888999887764 45666666665554 211 11 11221 111 1122222
Q ss_pred HHHHh-CCEEEEe-CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHc-ccce
Q 007936 344 EIILA-SDGAMVA-RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQ-RADA 420 (584)
Q Consensus 344 eIl~~-sDGImIa-RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~-G~D~ 420 (584)
++.+. +|.|.+. +..=+..-++ .+ +.+-+.++..+.|++.+.- .-+.. |+..+... |+|+
T Consensus 157 ~l~~~G~d~i~v~~i~~~g~~~g~-~~----~~i~~i~~~~~~pvia~GG---------i~~~~---di~~~l~~~g~dg 219 (243)
T cd04731 157 EVEELGAGEILLTSMDRDGTKKGY-DL----ELIRAVSSAVNIPVIASGG---------AGKPE---HFVEAFEEGGADA 219 (243)
T ss_pred HHHHCCCCEEEEeccCCCCCCCCC-CH----HHHHHHHhhCCCCEEEeCC---------CCCHH---HHHHHHHhCCCCE
Confidence 23222 6888873 1111111111 22 2222233456899998743 33333 45555554 9999
Q ss_pred EeecCCCCCCCChHHH
Q 007936 421 LMLSGESAMGQFPDKA 436 (584)
Q Consensus 421 imLs~ETa~G~yPvea 436 (584)
+|++.---.|.+..+.
T Consensus 220 v~vg~al~~~~~~~~~ 235 (243)
T cd04731 220 ALAASIFHFGEYTIAE 235 (243)
T ss_pred EEEeHHHHcCCCCHHH
Confidence 9998666677776554
No 398
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=41.25 E-value=2.3e+02 Score=29.96 Aligned_cols=151 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHH---HHHHHHHHHhhcCCC--CceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEV---INHLKSYIAARSRDS--DIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDL 359 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saed---V~~lr~~l~~~~~~~--~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDL 359 (584)
+.-|+.|-+.+...|+.-.-...+. ...+..++.....+. .++|...+.....++.+.+=++. .+-||+.
T Consensus 32 ~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD---- 107 (288)
T TIGR00167 32 NAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMID---- 107 (288)
T ss_pred HHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEec----
Q ss_pred cccCCCCChHHHHHHHHHHHHHcCCCe------------EEehhhhHhhhcCCCCChhhHHHHHHHHHc-ccceEeecCC
Q 007936 360 GAQIPLEQVPSAQQKIVQLCRQLNKPV------------IVASQLLESMIEYPTPTRAEVADVSEAVRQ-RADALMLSGE 426 (584)
Q Consensus 360 g~ei~~e~V~~~Qk~II~~c~~~gKPv------------ivATqmLeSMi~~p~PTrAEv~Dv~nav~~-G~D~imLs~E 426 (584)
|-++|+|+=...-+++++.|+..|.+| .+.+.--+++-..|. +...++.. |+|++-.|-=
T Consensus 108 gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~pe-------ea~~Fv~~TgvD~LAvaiG 180 (288)
T TIGR00167 108 GSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPE-------EAKEFVKLTGVDSLAAAIG 180 (288)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHH-------HHHHHHhccCCcEEeeccC
Q ss_pred CCCCCC---hH-HHHHHHHHHHHHH
Q 007936 427 SAMGQF---PD-KALTVLRSVSLRI 447 (584)
Q Consensus 427 Ta~G~y---Pv-eaV~~m~~I~~~a 447 (584)
|+-|.| |. --.+.|.+|.+..
T Consensus 181 t~HG~y~~~p~~Ld~~~L~~I~~~v 205 (288)
T TIGR00167 181 NVHGVYKGEPKGLDFERLEEIQKYV 205 (288)
T ss_pred ccccccCCCCCccCHHHHHHHHHHh
No 399
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=41.13 E-value=2.2e+02 Score=32.16 Aligned_cols=134 Identities=10% Similarity=0.067 Sum_probs=0.0
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeC------
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVAR------ 356 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaR------ 356 (584)
.+++.|++.|+|+|-++ +.--....+|+.+ +....|=. +..|.+|+.++ +|.|.+|+
T Consensus 268 D~~dlAl~~gAdGVHLG--QeDL~~~~aR~il-----g~~~iIGv------StHs~eEl~~A~~~gaDYI~lGPIFpT~T 334 (437)
T PRK12290 268 DYWQLAIKHQAYGVHLG--QEDLEEANLAQLT-----DAGIRLGL------STHGYYELLRIVQIQPSYIALGHIFPTTT 334 (437)
T ss_pred CHHHHHHHcCCCEEEcC--hHHcchhhhhhhc-----CCCCEEEE------ecCCHHHHHHHhhcCCCEEEECCccCCCC
Q ss_pred -CcccccCCCCChHHHHHHH--HHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCCh
Q 007936 357 -GDLGAQIPLEQVPSAQQKI--VQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFP 433 (584)
Q Consensus 357 -GDLg~ei~~e~V~~~Qk~I--I~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yP 433 (584)
-+-..-+|++.+..+++.+ +..++..++|++---- -...++.....-|+|++-..+.-.--..|
T Consensus 335 K~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGG-------------I~~~Ni~~vl~aGa~GVAVVSAI~~A~DP 401 (437)
T PRK12290 335 KQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGG-------------IDQSNAEQVWQCGVSSLAVVRAITLAEDP 401 (437)
T ss_pred CCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECC-------------cCHHHHHHHHHcCCCEEEEehHhhcCCCH
Q ss_pred HHHHHHHHHHHHH
Q 007936 434 DKALTVLRSVSLR 446 (584)
Q Consensus 434 veaV~~m~~I~~~ 446 (584)
.++++.+.++...
T Consensus 402 ~aa~~~l~~~~~~ 414 (437)
T PRK12290 402 QLVIEFFDQVMAE 414 (437)
T ss_pred HHHHHHHHHHHhh
No 400
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=41.03 E-value=2.4e+02 Score=27.35 Aligned_cols=105 Identities=12% Similarity=0.080 Sum_probs=61.0
Q ss_pred CHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCccc
Q 007936 285 DWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGDLG 360 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGDLg 360 (584)
+.++++.+++.|+|+|..|-- -.++.+.++.. ...++. ++.|++|+.++ +|.|.+-+.+
T Consensus 65 ~~~~~~~a~~~Ga~~i~~p~~--~~~~~~~~~~~-------~~~~i~------gv~t~~e~~~A~~~Gad~i~~~p~~-- 127 (190)
T cd00452 65 TPEQADAAIAAGAQFIVSPGL--DPEVVKAANRA-------GIPLLP------GVATPTEIMQALELGADIVKLFPAE-- 127 (190)
T ss_pred CHHHHHHHHHcCCCEEEcCCC--CHHHHHHHHHc-------CCcEEC------CcCCHHHHHHHHHCCCCEEEEcCCc--
Confidence 466778889999999998743 23333333322 245665 44466666655 6999885421
Q ss_pred ccCCCCChHHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCC
Q 007936 361 AQIPLEQVPSAQQKIVQLCRQL-NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGES 427 (584)
Q Consensus 361 ~ei~~e~V~~~Qk~II~~c~~~-gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ET 427 (584)
.. -+..-+.+ +... +.|++.... . ...++..+...|+|++..++-.
T Consensus 128 ----~~-g~~~~~~l---~~~~~~~p~~a~GG---------I----~~~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 128 ----AV-GPAYIKAL---KGPFPQVRFMPTGG---------V----SLDNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred ----cc-CHHHHHHH---HhhCCCCeEEEeCC---------C----CHHHHHHHHHCCCEEEEEchhc
Confidence 11 22222222 2233 466664321 1 2346677888899999988543
No 401
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=41.01 E-value=51 Score=30.11 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=32.6
Q ss_pred cchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcCceeC
Q 007936 215 DGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDPGLLL 257 (584)
Q Consensus 215 ~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~G~l~ 257 (584)
.++.+.+++||+|.--.| +.=+|.+++++.+..++..|-.++
T Consensus 33 ~~m~~~Lk~GD~VvT~gG-i~G~V~~I~d~~v~leia~gv~i~ 74 (109)
T PRK05886 33 IDLHESLQPGDRVHTTSG-LQATIVGITDDTVDLEIAPGVVTT 74 (109)
T ss_pred HHHHHhcCCCCEEEECCC-eEEEEEEEeCCEEEEEECCCeEEE
Confidence 467889999999999988 445677888888888876554444
No 402
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=40.91 E-value=4.3e+02 Score=28.42 Aligned_cols=132 Identities=16% Similarity=0.204 Sum_probs=66.8
Q ss_pred CCCccCHhhh--------HHhHhcCCCEEEEcC-------------CCCH------------HHHHHHHHHHHhhcCCCC
Q 007936 280 TISPKDWLDI--------DFGITEGVDFIAISF-------------VKSA------------EVINHLKSYIAARSRDSD 326 (584)
Q Consensus 280 ~lt~kD~~dI--------~~al~~gvD~I~lSf-------------V~sa------------edV~~lr~~l~~~~~~~~ 326 (584)
.+|..|++.+ +.+.+.|+|+|=+.. ++.. .-+.++.+.++ +..+.+
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir-~~vg~~ 208 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVR-AAVGPD 208 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHH-HHcCCC
Confidence 3566666555 567789999985544 3332 22223333332 223555
Q ss_pred ceEEEeecC----------HHHHhcHHHHHHh--CCEEEEeCCccccc------CCC-CChHHHHHHHHHHHHH-cCCCe
Q 007936 327 IAVIAKIES----------IDSLKNLEEIILA--SDGAMVARGDLGAQ------IPL-EQVPSAQQKIVQLCRQ-LNKPV 386 (584)
Q Consensus 327 i~IiAKIEt----------~~av~NldeIl~~--sDGImIaRGDLg~e------i~~-e~V~~~Qk~II~~c~~-~gKPv 386 (584)
..|..+|-- .++++-+..+.+. .|.|=|..|-..-. .+. ..-...+...++..++ .++||
T Consensus 209 ~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipv 288 (343)
T cd04734 209 FIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPV 288 (343)
T ss_pred CeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCE
Confidence 556666532 2334334444443 58888865543221 111 0001122334444443 48899
Q ss_pred EEehhhhHhhhcCCCCChhhHHHHHHHHHcc-cceEeec
Q 007936 387 IVASQLLESMIEYPTPTRAEVADVSEAVRQR-ADALMLS 424 (584)
Q Consensus 387 ivATqmLeSMi~~p~PTrAEv~Dv~nav~~G-~D~imLs 424 (584)
+....+ -|.+ +.-.++.+| +|+||+.
T Consensus 289 i~~G~i---------~~~~---~~~~~l~~~~~D~V~~g 315 (343)
T cd04734 289 FHAGRI---------RDPA---EAEQALAAGHADMVGMT 315 (343)
T ss_pred EeeCCC---------CCHH---HHHHHHHcCCCCeeeec
Confidence 876432 3333 345556665 9999996
No 403
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=40.80 E-value=82 Score=31.28 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=37.8
Q ss_pred HhhhHHhHhcCCCEEEEcC--------CCCHHHHHHHHHHHHhhcCCCCceEEE--eecCHHHHhcHHHHHHh-CCEEEE
Q 007936 286 WLDIDFGITEGVDFIAISF--------VKSAEVINHLKSYIAARSRDSDIAVIA--KIESIDSLKNLEEIILA-SDGAMV 354 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSf--------V~saedV~~lr~~l~~~~~~~~i~IiA--KIEt~~av~NldeIl~~-sDGImI 354 (584)
.++++.+.+.|+|+|.+.- .....+...++++.+ .. ++++++ -|-| .+++.++++. +||+++
T Consensus 129 ~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~--~~--~iPvia~GGI~t---~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 129 LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLK--AV--GCPVIAEGRINT---PEQAKKALELGAHAVVV 201 (221)
T ss_pred HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHH--hC--CCCEEEECCCCC---HHHHHHHHHCCCCEEEE
Confidence 4456788999999997631 112223444444332 11 245554 2322 2466666666 899999
Q ss_pred eCC
Q 007936 355 ARG 357 (584)
Q Consensus 355 aRG 357 (584)
|+.
T Consensus 202 Gsa 204 (221)
T PRK01130 202 GGA 204 (221)
T ss_pred chH
Confidence 965
No 404
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=40.65 E-value=3e+02 Score=28.84 Aligned_cols=99 Identities=15% Similarity=0.088 Sum_probs=57.3
Q ss_pred HhhhHHhHhcCCCEEEEcC------CCCHHHHHHHHHHHHhhcCCCCceEEEeecC---HHHHhcHHHHHHh-CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAISF------VKSAEVINHLKSYIAARSRDSDIAVIAKIES---IDSLKNLEEIILA-SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSf------V~saedV~~lr~~l~~~~~~~~i~IiAKIEt---~~av~NldeIl~~-sDGImIa 355 (584)
.+.++|.++.|+|+|++.= .=|.++=.++.+... ...+.++.|++-+-. .++++......+. +|++|+.
T Consensus 24 ~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~-~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~ 102 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAI-DQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVI 102 (294)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHH-HHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEc
Confidence 4556889999999988652 233444444443332 223456889988853 4555555554444 7999997
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHc-CCCeEEe
Q 007936 356 RGDLGAQIPLEQVPSAQQKIVQLCRQL-NKPVIVA 389 (584)
Q Consensus 356 RGDLg~ei~~e~V~~~Qk~II~~c~~~-gKPvivA 389 (584)
+-..-- ... ..+....-..|.+. +.|+++-
T Consensus 103 pP~y~~-~~~---~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 103 VPYYNK-PNQ---EALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred CccCCC-CCH---HHHHHHHHHHHHhccCCCEEEE
Confidence 644311 111 23334444455566 7888864
No 405
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=40.62 E-value=79 Score=34.46 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=45.9
Q ss_pred cccccccchHhhhc---CCCCCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Q 007936 85 SIEVDSVTEAELKE---NGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKG 161 (584)
Q Consensus 85 ~~~~~~~~~~~~~~---~~~~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~ 161 (584)
+.++|+.|..|+.. .|+. ..+|+.+ ||.. +.+.|+.+++.|+.++ |+ .+.++ ++.++++.++.+
T Consensus 73 G~g~dvaS~~E~~~~~~~G~~---~~~I~~~-gp~k-~~~~l~~a~~~gi~~i--~i--Ds~~e----l~~l~~~a~~~~ 139 (417)
T TIGR01048 73 GSGFDVVSGGELYRALAAGFP---PEKIVFN-GNGK-SRAELERALELGIRCI--NV--DSESE----LELLNEIAPELG 139 (417)
T ss_pred CCcEEEeCHHHHHHHHHcCCC---cceEEEe-CCCC-CHHHHHHHHHcCCCEE--Ee--CCHHH----HHHHHHHHHhcC
Confidence 46789998888773 4543 3467776 6743 4788999999988633 44 23433 344445555555
Q ss_pred CceEEEeecC
Q 007936 162 FAVAIMMDTE 171 (584)
Q Consensus 162 ~~i~I~lDl~ 171 (584)
.++.+++.+.
T Consensus 140 ~~~~v~lRIn 149 (417)
T TIGR01048 140 KKARVSLRVN 149 (417)
T ss_pred CCceEEEEEC
Confidence 5555655443
No 406
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=40.58 E-value=2.8e+02 Score=29.86 Aligned_cols=117 Identities=20% Similarity=0.282 Sum_probs=62.7
Q ss_pred CCCEEEEcC----------CCCHHHHHHHHHHHHhhc----CCCCceEEEeecCHHHHhcHHHHHHh-----CCEEEEeC
Q 007936 296 GVDFIAISF----------VKSAEVINHLKSYIAARS----RDSDIAVIAKIESIDSLKNLEEIILA-----SDGAMVAR 356 (584)
Q Consensus 296 gvD~I~lSf----------V~saedV~~lr~~l~~~~----~~~~i~IiAKIEt~~av~NldeIl~~-----sDGImIaR 356 (584)
.+|+|-+.+ -+.++.+.++.+.++..- ....+.|++|+=---.-+++.++++. +|||.+.=
T Consensus 166 ~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~N 245 (335)
T TIGR01036 166 LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATN 245 (335)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEEC
Confidence 489977632 234455555544443211 01238899999432222345555553 68887531
Q ss_pred C----cc------cccCC-C---CChHHHHHHHHHHHHHc--CCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccce
Q 007936 357 G----DL------GAQIP-L---EQVPSAQQKIVQLCRQL--NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADA 420 (584)
Q Consensus 357 G----DL------g~ei~-~---e~V~~~Qk~II~~c~~~--gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~ 420 (584)
- +. +...+ + ..-+.+.+.+-...+.. ..|+|-+..+. ...|+..++..|||+
T Consensus 246 T~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~------------~~~da~e~l~aGA~~ 313 (335)
T TIGR01036 246 TTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGIS------------SAQDALEKIRAGASL 313 (335)
T ss_pred CCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCCcH
Confidence 0 10 00111 1 12344444444444444 36777665433 356889999999999
Q ss_pred Eeec
Q 007936 421 LMLS 424 (584)
Q Consensus 421 imLs 424 (584)
+.+.
T Consensus 314 Vqv~ 317 (335)
T TIGR01036 314 LQIY 317 (335)
T ss_pred HHhh
Confidence 9886
No 407
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.42 E-value=1e+02 Score=32.81 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=48.1
Q ss_pred CHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHH--hcHHHHHHh-CCEEEEeC
Q 007936 285 DWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSL--KNLEEIILA-SDGAMVAR 356 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av--~NldeIl~~-sDGImIaR 356 (584)
..++...+++.|+|.|.+=... +++++++.+.++ ..+.++ +||---|+ +|+.+.++. +|.|-+|.
T Consensus 208 tl~ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~--~~~~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 208 SLEQLDEVLAEGAELVLLDNFP-VWQTQEAVQRRD--ARAPTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred CHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHh--ccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 4567788899999999999876 889999888774 223333 45555444 578888887 89998864
No 408
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.39 E-value=36 Score=30.77 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=23.8
Q ss_pred ecccchhcccCCCCEEEEeCCeeEEEEEEEe
Q 007936 212 VNYDGFAEDVKVGDELLVDGGMVRFEVIEKI 242 (584)
Q Consensus 212 v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~ 242 (584)
++++. ...+++||+|.+..+++..+|+++.
T Consensus 26 l~d~k-rr~ik~GD~IiF~~~~l~v~V~~vr 55 (111)
T COG4043 26 LADPK-RRQIKPGDKIIFNGDKLKVEVIDVR 55 (111)
T ss_pred ecCHh-hcCCCCCCEEEEcCCeeEEEEEEEe
Confidence 44444 3679999999999999999998753
No 409
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=40.29 E-value=2e+02 Score=30.50 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=50.7
Q ss_pred CCEEEEe-CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHH-HHHHHcccceEeecCC
Q 007936 349 SDGAMVA-RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADV-SEAVRQRADALMLSGE 426 (584)
Q Consensus 349 sDGImIa-RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv-~nav~~G~D~imLs~E 426 (584)
+|||++. ---=...+..++-..+.+..++.+ .-..|||+-+ ...+-.|..+. -.|-..|+|++|+..=
T Consensus 43 v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv---------~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 43 VDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGA---------TTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred CCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEe---------ccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 7999984 111112233344444444444444 3357888653 12233444444 4467779999999865
Q ss_pred CCCCCChHHHHHHHHHHHHHHh
Q 007936 427 SAMGQFPDKALTVLRSVSLRIE 448 (584)
Q Consensus 427 Ta~G~yPveaV~~m~~I~~~aE 448 (584)
--...-+.+.++..+.|+..++
T Consensus 113 ~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 113 MWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred cCCCCCHHHHHHHHHHHHHhCC
Confidence 3222234677888888887763
No 410
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=40.04 E-value=1.8e+02 Score=29.29 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 369 PSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 369 ~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
..+...+++.++++|++|++.|- - +..+...++..|+|+|+-
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwtv----------n---~~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWTV----------N---DPEDMARLIDLGVDGIIT 258 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEecC----------C---CHHHHHHHHHcCCCEEEc
Confidence 34667899999999999999972 1 124566788899999874
No 411
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=40.03 E-value=1.6e+02 Score=28.45 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCce
Q 007936 120 FEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAV 164 (584)
Q Consensus 120 ~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i 164 (584)
.+.+++++++|++.+.+..-..+..++.+.++.+++..+.+|.++
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l 68 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPL 68 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeE
Confidence 468999999999999999888777777777777777666655443
No 412
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=39.89 E-value=76 Score=34.40 Aligned_cols=94 Identities=19% Similarity=0.113 Sum_probs=60.0
Q ss_pred CHhhhHHhHhcCCCEEEEcCC---------CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCE
Q 007936 285 DWLDIDFGITEGVDFIAISFV---------KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDG 351 (584)
Q Consensus 285 D~~dI~~al~~gvD~I~lSfV---------~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDG 351 (584)
..+|.+.+.+.|+|+|.+|.- .+.+-+.++++.+. ..+.++.||+ --||.|=.+|+++ +|+
T Consensus 223 ~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~--~~~~~~~vi~----~GGIr~G~Dv~kalaLGA~a 296 (344)
T cd02922 223 TVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCP--EVFDKIEVYV----DGGVRRGTDVLKALCLGAKA 296 (344)
T ss_pred CHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHH--HhCCCceEEE----eCCCCCHHHHHHHHHcCCCE
Confidence 367888999999999999862 34444566666542 2234567766 3678888888777 899
Q ss_pred EEEeCCcccccC--CCC----ChHHHHHHHHHHHHHcCC
Q 007936 352 AMVARGDLGAQI--PLE----QVPSAQQKIVQLCRQLNK 384 (584)
Q Consensus 352 ImIaRGDLg~ei--~~e----~V~~~Qk~II~~c~~~gK 384 (584)
++|||.=|-.-. |-+ -+..+++++-......|.
T Consensus 297 V~iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~ 335 (344)
T cd02922 297 VGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGV 335 (344)
T ss_pred EEECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999987654222 222 233344455555555554
No 413
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=39.70 E-value=96 Score=33.04 Aligned_cols=73 Identities=27% Similarity=0.341 Sum_probs=45.0
Q ss_pred cccccccchHhhh---cCCCCCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Q 007936 85 SIEVDSVTEAELK---ENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKG 161 (584)
Q Consensus 85 ~~~~~~~~~~~~~---~~~~~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~ 161 (584)
+.++|+.|..|+. +.|+ ...+|+.+ ||. .+.+.|+.+++.|+ ..+++.+ .++. +.+.++.++.+
T Consensus 51 G~g~~vaS~~E~~~~~~~G~---~~~~I~~~-~p~-k~~~~l~~a~~~g~--~~~~ids--~~el----~~l~~~a~~~~ 117 (373)
T cd06828 51 GLGADVVSGGELYRALKAGF---PPERIVFT-GNG-KSDEELELALELGI--LRINVDS--LSEL----ERLGEIAPELG 117 (373)
T ss_pred CCcEEEeCHHHHHHHHHcCC---CcccEEEe-CCC-CCHHHHHHHHHcCC--eEEEECC--HHHH----HHHHHHHHhcC
Confidence 3678888887776 4454 33467775 674 45788999999984 5666644 4443 34444544555
Q ss_pred CceEEEeec
Q 007936 162 FAVAIMMDT 170 (584)
Q Consensus 162 ~~i~I~lDl 170 (584)
.++.+++-+
T Consensus 118 ~~~~v~lRv 126 (373)
T cd06828 118 KGAPVALRV 126 (373)
T ss_pred CCCeEEEEE
Confidence 555555533
No 414
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=39.65 E-value=4.3e+02 Score=26.94 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=90.4
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCC
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPL 365 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~ 365 (584)
.+.++--.+.|++.+.+- ++-.++..++.+.++ +.|-...+-.|=+| .|+.++..++..|-++| .++|=|+
T Consensus 77 eq~V~~~a~agas~~tfH-~E~~q~~~~lv~~ir--~~Gmk~G~alkPgT--~Ve~~~~~~~~~D~vLv----MtVePGF 147 (224)
T KOG3111|consen 77 EQWVDQMAKAGASLFTFH-YEATQKPAELVEKIR--EKGMKVGLALKPGT--PVEDLEPLAEHVDMVLV----MTVEPGF 147 (224)
T ss_pred HHHHHHHHhcCcceEEEE-EeeccCHHHHHHHHH--HcCCeeeEEeCCCC--cHHHHHHhhccccEEEE----EEecCCC
Confidence 344555568899976664 355566888888884 44555667777777 46777777777887776 3445444
Q ss_pred C---ChHHHHHHHHHHHHHcCCCeE-EehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHH
Q 007936 366 E---QVPSAQQKIVQLCRQLNKPVI-VASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLR 441 (584)
Q Consensus 366 e---~V~~~Qk~II~~c~~~gKPvi-vATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~ 441 (584)
- =++....++-..-.+..++.| +-. .-.| +-+..+...||++++-..-.---.-|-++++.|+
T Consensus 148 GGQkFme~mm~KV~~lR~kyp~l~ievDG--------Gv~~-----~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr 214 (224)
T KOG3111|consen 148 GGQKFMEDMMPKVEWLREKYPNLDIEVDG--------GVGP-----STIDKAAEAGANMIVAGSAVFGAADPSDVISLLR 214 (224)
T ss_pred chhhhHHHHHHHHHHHHHhCCCceEEecC--------CcCc-----chHHHHHHcCCCEEEecceeecCCCHHHHHHHHH
Confidence 2 223333344444457788877 321 1122 3446777889999887655555577999999999
Q ss_pred HHHHHH
Q 007936 442 SVSLRI 447 (584)
Q Consensus 442 ~I~~~a 447 (584)
+.++.+
T Consensus 215 ~~v~~a 220 (224)
T KOG3111|consen 215 NSVEKA 220 (224)
T ss_pred HHHhhh
Confidence 988665
No 415
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=39.57 E-value=5e+02 Score=27.67 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCC-----hhhHHHHHHHHHcccceEeecCC------CCCCCChHHH
Q 007936 368 VPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPT-----RAEVADVSEAVRQRADALMLSGE------SAMGQFPDKA 436 (584)
Q Consensus 368 V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PT-----rAEv~Dv~nav~~G~D~imLs~E------Ta~G~yPvea 436 (584)
+..+.+++-+ .+..++|+|+. +- ...++ -+|..+.+..+..++|++-|.-- ...+++|-..
T Consensus 114 ~~~~~~~l~~-~~~~~~plivs------i~-g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~ 185 (327)
T cd04738 114 ADAVAKRLKK-RRPRGGPLGVN------IG-KNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEAL 185 (327)
T ss_pred HHHHHHHHHH-hccCCCeEEEE------Ee-CCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHH
Confidence 3444444433 22368999874 21 11222 23445555555667999998421 2236777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccCC-CCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccC
Q 007936 437 LTVLRSVSLRIEKWWREEKRHEAMELP-DVGSSFAESISEEICNSAAKMANNLEVDALFVYTK 498 (584)
Q Consensus 437 V~~m~~I~~~aE~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~ 498 (584)
.++++.+....... ...++.- .+. +....+.+ ...++++.+.++++|.+..+
T Consensus 186 ~~iv~av~~~~~~~------~~~~Pv~vKl~---~~~~~~~~-~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 186 RELLTAVKEERNKL------GKKVPLLVKIA---PDLSDEEL-EDIADVALEHGVDGIIATNT 238 (327)
T ss_pred HHHHHHHHHHHhhc------ccCCCeEEEeC---CCCCHHHH-HHHHHHHHHcCCcEEEEECC
Confidence 77766665443210 0001100 011 11111222 23455667789999987764
No 416
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=39.46 E-value=1.6e+02 Score=25.97 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=33.0
Q ss_pred eEeeCCCEEEEeecccCCCCCCCEEEe-cccchh-cccCCCCEEEEe--------CCeeEEEEEEEeC
Q 007936 186 ARAEDGEIWTFTVRAFDSPRPERTITV-NYDGFA-EDVKVGDELLVD--------GGMVRFEVIEKIG 243 (584)
Q Consensus 186 i~l~~G~~v~~t~~~~~~~~~~~~i~v-~~~~~~-~~v~vGd~I~id--------DG~i~l~V~~~~~ 243 (584)
+....+-.+.|+..+-..... ..++- .+..+. ..++.|++|.+- .|+++|.|.++++
T Consensus 33 ~~~~~~gh~YftLkD~~a~i~-~~~~~~~~~~i~~~~l~~G~~V~v~g~~~~y~~~G~~sl~v~~i~P 99 (99)
T PF13742_consen 33 LKRHSSGHVYFTLKDEEASIS-CVIFRSRARRIRGFDLKDGDKVLVRGRVSFYEPRGSLSLIVEDIDP 99 (99)
T ss_pred cEECCCceEEEEEEcCCcEEE-EEEEHHHHhhCCCCCCCCCCEEEEEEEEEEECCCcEEEEEEEEeEC
Confidence 333345567777663111100 12222 234454 678999999885 6888998887753
No 417
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.27 E-value=23 Score=37.43 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=31.8
Q ss_pred hhcCCcEEEEccCCchHHHHHhc----cCCCCcEEEEcCch
Q 007936 486 NNLEVDALFVYTKTGHMASLLSR----CRPDCPIFAFTSTT 522 (584)
Q Consensus 486 ~~l~a~aIvv~T~sG~tA~~lSr----~RP~~PIiavT~~~ 522 (584)
.+..+|.++|-|.+|+||..+|. ..|.++.+.+||-.
T Consensus 171 ~~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~itPI~ 211 (295)
T PRK01231 171 CSQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMF 211 (295)
T ss_pred EEEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEEEecC
Confidence 35689999999999999999998 56788999999853
No 418
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=39.26 E-value=4.8e+02 Score=27.44 Aligned_cols=131 Identities=19% Similarity=0.268 Sum_probs=79.8
Q ss_pred CCCCccCHhhhHHhHhcCCCEEEEc---------C-----CCCHHHHHHHHHHHHhhcCCCCceEEEee------cCHHH
Q 007936 279 PTISPKDWLDIDFGITEGVDFIAIS---------F-----VKSAEVINHLKSYIAARSRDSDIAVIAKI------ESIDS 338 (584)
Q Consensus 279 p~lt~kD~~dI~~al~~gvD~I~lS---------f-----V~saedV~~lr~~l~~~~~~~~i~IiAKI------Et~~a 338 (584)
--+|.+|.---..+-+.|+|.|.+. + |.-.+-+..++... +.. .+..|++-+ .-.++
T Consensus 18 ~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~--rg~-~~~~vv~DmPf~sy~~~e~a 94 (263)
T TIGR00222 18 VAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVK--RGA-PNCLIVTDLPFMSYATPEQA 94 (263)
T ss_pred EEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHH--hhC-CCceEEeCCCcCCCCCHHHH
Confidence 3457889888888889999998864 1 33334445555554 222 235555322 24579
Q ss_pred HhcHHHHHHh--CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeE-------EehhhhH-hhhcCCCCChhh--
Q 007936 339 LKNLEEIILA--SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVI-------VASQLLE-SMIEYPTPTRAE-- 406 (584)
Q Consensus 339 v~NldeIl~~--sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvi-------vATqmLe-SMi~~p~PTrAE-- 406 (584)
++|...+++. +|+|=|--| ..+-..++...+.|.||+ ..-..+- -.+....+.+++
T Consensus 95 ~~na~rl~~eaGa~aVkiEgg------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~ 162 (263)
T TIGR00222 95 LKNAARVMQETGANAVKLEGG------------EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKL 162 (263)
T ss_pred HHHHHHHHHHhCCeEEEEcCc------------HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHH
Confidence 9999999984 788887633 223455688899999999 2111111 112222222222
Q ss_pred HHHHHHHHHcccceEeec
Q 007936 407 VADVSEAVRQRADALMLS 424 (584)
Q Consensus 407 v~Dv~nav~~G~D~imLs 424 (584)
+.|.-.....|+|+++|-
T Consensus 163 i~~A~a~e~AGA~~ivlE 180 (263)
T TIGR00222 163 LEDALALEEAGAQLLVLE 180 (263)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 344445668899999985
No 419
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=39.15 E-value=2.1e+02 Score=28.14 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 369 PSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 369 ~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
..+.+..++.++++|++|.+.|- -+. .+...++..|+|+++-
T Consensus 176 ~~~~~~~v~~~~~~G~~v~~wtv----------n~~---~~~~~~~~~Gvd~i~T 217 (220)
T cd08579 176 STLNKEFIRQAHQNGKKVYVWTV----------NDP---DDMQRYLAMGVDGIIT 217 (220)
T ss_pred hhcCHHHHHHHHHCCCEEEEEcC----------CCH---HHHHHHHHcCCCEEeC
Confidence 33567899999999999999871 122 3447788899999863
No 420
>PRK10812 putative DNAse; Provisional
Probab=39.02 E-value=3.4e+02 Score=28.07 Aligned_cols=98 Identities=20% Similarity=0.255 Sum_probs=58.2
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhc-----CCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccc
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARS-----RDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGA 361 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~-----~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ 361 (584)
+-++.+.+.|+..++.+-+ +.++..++.++.+... .|-++.- +...+.++.+++++..- =++|=|..|.
T Consensus 24 ~vl~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~v~~~~GiHP~~---~~~~~~~~~l~~~~~~~--~vvaIGEiGL 97 (265)
T PRK10812 24 DVLAKAAARDVKFCLAVAT-TLPGYRHMRDLVGERDNVVFSCGVHPLN---QDEPYDVEELRRLAAEE--GVVAMGETGL 97 (265)
T ss_pred HHHHHHHHcCCCEEEEeCC-CHHHHHHHHHHHhhCCCeEEEEEeCCCC---CCChhHHHHHHHHhcCC--CEEEEEeeec
Confidence 3456788999998777664 5777777777774210 1111111 11234455566555332 3445567777
Q ss_pred cCCCC-ChHHHHH----HHHHHHHHcCCCeEEeh
Q 007936 362 QIPLE-QVPSAQQ----KIVQLCRQLNKPVIVAS 390 (584)
Q Consensus 362 ei~~e-~V~~~Qk----~II~~c~~~gKPvivAT 390 (584)
+.... .-...|+ ..++.|++.|+|+++.|
T Consensus 98 D~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~ 131 (265)
T PRK10812 98 DYYYTPETKVRQQESFRHHIQIGRELNKPVIVHT 131 (265)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 76431 2345565 45677899999999985
No 421
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=38.93 E-value=1.6e+02 Score=31.33 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=41.1
Q ss_pred CceEEEecCCCCCCH----HHHHHHHHhcCCEEEEeCCCCC-----HHHHHHHHHHHHHHHHHhCCceEEEeecC
Q 007936 106 RTKLVCTIGPATCGF----EQLEALAVGGMNVARINMCHGT-----REWHRRVIERVRRLNEEKGFAVAIMMDTE 171 (584)
Q Consensus 106 ~tKIi~TiGPa~~~~----e~l~~li~~Gm~v~RiN~sHg~-----~e~~~~~i~~ir~~~~e~~~~i~I~lDl~ 171 (584)
+...-+|+|....++ +..+++.+.|.+.+.|...|+. .++-.++++.+| +..|..+.+++|..
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir---~~~g~~~~l~vDaN 197 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVR---EAVGPDVDLMVDAN 197 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHH---HhhCCCCEEEEECC
Confidence 444556776543233 3567777899999999998876 444444455554 55666677777774
No 422
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=38.87 E-value=3.2e+02 Score=30.86 Aligned_cols=139 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCccccc
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGDLGAQ 362 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGDLg~e 362 (584)
.+.+.|.+.|+|+|-++ +..-.+.++|+.+ +.+..|=. +..+++|+..+ +|.|.+|+- +...
T Consensus 358 d~~~lA~~~~adGvHl~--~~d~~~~~~r~~~-----~~~~~iG~------S~h~~~e~~~a~~~gadyi~~gpi-f~t~ 423 (502)
T PLN02898 358 DRVDVALACDADGVHLG--QSDMPVRLARSLL-----GPGKIIGV------SCKTPEQAEQAWKDGADYIGCGGV-FPTN 423 (502)
T ss_pred ChHHHHHhcCCCEEEeC--hHhcCHHHHHHhc-----CCCCEEEE------eCCCHHHHHHHhhcCCCEEEECCe-ecCC
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHH
Q 007936 363 IPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRS 442 (584)
Q Consensus 363 i~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~ 442 (584)
.-...-+.-.+.+-+.+.....||+.. .--+...+.++..+=.+|+|++.+.+.-.-=..|.++++.+.+
T Consensus 424 tk~~~~~~g~~~~~~~~~~~~~Pv~ai----------GGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~ 493 (502)
T PLN02898 424 TKANNKTIGLDGLREVCEASKLPVVAI----------GGISASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHA 493 (502)
T ss_pred CCCCCCCCCHHHHHHHHHcCCCCEEEE----------CCCCHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHH
Q ss_pred HHHHHhh
Q 007936 443 VSLRIEK 449 (584)
Q Consensus 443 I~~~aE~ 449 (584)
+..+..+
T Consensus 494 ~~~~~~~ 500 (502)
T PLN02898 494 ILTEALS 500 (502)
T ss_pred HHHHHhc
No 423
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=38.77 E-value=2.8e+02 Score=30.61 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccce--EeecCCCCCCCChHHHHHHHHHHHHHHhhh
Q 007936 373 QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADA--LMLSGESAMGQFPDKALTVLRSVSLRIEKW 450 (584)
Q Consensus 373 k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~--imLs~ETa~G~yPveaV~~m~~I~~~aE~~ 450 (584)
.-+...|+..|.|+.+- .|..+....+...-..|++. +.+.++ ..-++++...++.++- .+
T Consensus 77 ~a~A~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~vv~v~~~g~-----~~~~a~~~a~~~~~~~-g~ 139 (409)
T TIGR02079 77 QGFAYACRHLGVHGTVF-----------MPATTPKQKIDRVKIFGGEFIEIILVGD-----TFDQCAAAAREHVEDH-GG 139 (409)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCCeeEEEEeCC-----CHHHHHHHHHHHHHhc-CC
Confidence 35667899999999886 34444444455666789984 444432 2345555544443321 11
Q ss_pred hhhhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHHHHHh----ccCCCCcEEEEcCch
Q 007936 451 WREEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTT 522 (584)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~ 522 (584)
+..++... + .....-..-+.|+.++++ .++||+..-+|.+..-++ .++|...|+++-+..
T Consensus 140 ---------~~~~~~~~--~-~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~ 205 (409)
T TIGR02079 140 ---------TFIPPFDD--P-RIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEG 205 (409)
T ss_pred ---------EEeCCCCC--H-hHhhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 11111111 1 122333445777888774 799999999998876554 457999999998853
No 424
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=38.73 E-value=3.3e+02 Score=29.80 Aligned_cols=131 Identities=12% Similarity=0.167 Sum_probs=73.4
Q ss_pred HHhHhcCCCEEEE-------cCCCCHHHHHHHHHHHHh--hcCCCCceEEEee--cCHHHHhcHHHHHHh-CCEEEEeCC
Q 007936 290 DFGITEGVDFIAI-------SFVKSAEVINHLKSYIAA--RSRDSDIAVIAKI--ESIDSLKNLEEIILA-SDGAMVARG 357 (584)
Q Consensus 290 ~~al~~gvD~I~l-------SfV~saedV~~lr~~l~~--~~~~~~i~IiAKI--Et~~av~NldeIl~~-sDGImIaRG 357 (584)
.+.++.|+|+|.. +|..-.|-+..+++.++. .+.++...+++-| .+.+.+++.+...+. +|++|+...
T Consensus 153 ~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~ 232 (367)
T cd08205 153 YELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPN 232 (367)
T ss_pred HHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4566789999842 344445555555555532 1224556677777 456777777777776 899999744
Q ss_pred cccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhh--HHHHHHHHHcccceEeecCCCCCCCChHH
Q 007936 358 DLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAE--VADVSEAVRQRADALMLSGESAMGQFPDK 435 (584)
Q Consensus 358 DLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAE--v~Dv~nav~~G~D~imLs~ETa~G~yPve 435 (584)
-.+ +..++.+.+. .+.|+...-.+.-.|..+|.=--.. ...+ +=+.|+|.++-. |..|+|+..
T Consensus 233 ~~g--------~~~~~~l~~~---~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl--~RlaGad~~~~~--~~~gk~~~~ 297 (367)
T cd08205 233 LVG--------LDALRALAED---PDLPIMAHPAFAGALSRSPDYGSHFLLLGKL--MRLAGADAVIFP--GPGGRFPFS 297 (367)
T ss_pred ccc--------ccHHHHHHhc---CCCeEEEccCcccccccCCCCcCCHHHHHHH--HHHcCCCccccC--CCccCcCCC
Confidence 221 2223333332 2777776655555554433210000 1112 334799998876 457787543
No 425
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=38.72 E-value=63 Score=34.66 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=36.1
Q ss_pred hHHhHhcCCCEEEEcCCCCH---------------HHHHHHHHHHHhhcCCCCceEEE--eecCHHHHhcHHHHHHhCCE
Q 007936 289 IDFGITEGVDFIAISFVKSA---------------EVINHLKSYIAARSRDSDIAVIA--KIESIDSLKNLEEIILASDG 351 (584)
Q Consensus 289 I~~al~~gvD~I~lSfV~sa---------------edV~~lr~~l~~~~~~~~i~IiA--KIEt~~av~NldeIl~~sDG 351 (584)
++...+.|+|+|.+. -++. .+...++++.+ .-.++.||+ -|-|.+ .+.++++.+||
T Consensus 157 ~~~l~~aG~d~i~vh-~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~---~~~~iPVI~nGgI~s~e---da~~~l~~aDg 229 (333)
T PRK11815 157 VDTVAEAGCDTFIVH-ARKAWLKGLSPKENREIPPLDYDRVYRLKR---DFPHLTIEINGGIKTLE---EAKEHLQHVDG 229 (333)
T ss_pred HHHHHHhCCCEEEEc-CCchhhcCCCccccccCCCcCHHHHHHHHH---hCCCCeEEEECCcCCHH---HHHHHHhcCCE
Confidence 345567899999886 2321 12333333221 112356665 354443 33344445999
Q ss_pred EEEeCCccc
Q 007936 352 AMVARGDLG 360 (584)
Q Consensus 352 ImIaRGDLg 360 (584)
||||||=|+
T Consensus 230 VmIGRa~l~ 238 (333)
T PRK11815 230 VMIGRAAYH 238 (333)
T ss_pred EEEcHHHHh
Confidence 999999664
No 426
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=38.70 E-value=4.5e+02 Score=28.62 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=65.9
Q ss_pred CCCccCHhhh--------HHhHhcCCCEEEEcCCC-------------CH------------HHHHHHHHHHHhhcCCCC
Q 007936 280 TISPKDWLDI--------DFGITEGVDFIAISFVK-------------SA------------EVINHLKSYIAARSRDSD 326 (584)
Q Consensus 280 ~lt~kD~~dI--------~~al~~gvD~I~lSfV~-------------sa------------edV~~lr~~l~~~~~~~~ 326 (584)
.+|..|++.+ +++.+.|+|+|=+..-. .. .-+.++.+.++ +..+.+
T Consensus 139 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr-~~vg~~ 217 (370)
T cd02929 139 EMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTK-DAVGDD 217 (370)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHH-HHcCCC
Confidence 4677777666 46778999999664332 21 22223333332 223556
Q ss_pred ceEEEeecCH------------HHHhcHHHHHHhCCEEEEeCCcccccCC-CCCh-HHHHHHHHHHH-HHcCCCeEEehh
Q 007936 327 IAVIAKIESI------------DSLKNLEEIILASDGAMVARGDLGAQIP-LEQV-PSAQQKIVQLC-RQLNKPVIVASQ 391 (584)
Q Consensus 327 i~IiAKIEt~------------~av~NldeIl~~sDGImIaRGDLg~ei~-~e~V-~~~Qk~II~~c-~~~gKPvivATq 391 (584)
..|..+|--. ++++-++.+-+..|.+-+..|-...... .... ...+...++.. +..++||+..-.
T Consensus 218 ~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~ 297 (370)
T cd02929 218 CAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGR 297 (370)
T ss_pred ceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCC
Confidence 6777776211 1122222232336888777664322110 0000 01122233333 345889987633
Q ss_pred hhHhhhcCCCCChhhHHHHHHHHHcc-cceEeec
Q 007936 392 LLESMIEYPTPTRAEVADVSEAVRQR-ADALMLS 424 (584)
Q Consensus 392 mLeSMi~~p~PTrAEv~Dv~nav~~G-~D~imLs 424 (584)
.-+. .+...++.+| +|+|++.
T Consensus 298 ---------i~~~---~~~~~~l~~g~~D~V~~g 319 (370)
T cd02929 298 ---------FTSP---DKMVEVVKSGILDLIGAA 319 (370)
T ss_pred ---------CCCH---HHHHHHHHcCCCCeeeec
Confidence 2222 2335567766 9999986
No 427
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=38.68 E-value=69 Score=32.97 Aligned_cols=60 Identities=15% Similarity=0.229 Sum_probs=44.7
Q ss_pred CCceEEEec-----CCCCCC-HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHH-hCCce
Q 007936 105 RRTKLVCTI-----GPATCG-FEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEE-KGFAV 164 (584)
Q Consensus 105 r~tKIi~Ti-----GPa~~~-~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e-~~~~i 164 (584)
.++|+|++- .|+..+ .+.+++|.+.|.|+.+|-..--+.++..++++..+++.++ .+.|+
T Consensus 134 ~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~ 200 (253)
T PRK02412 134 HGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPL 200 (253)
T ss_pred cCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence 579999987 233222 3578889999999999998877888888888887777554 34554
No 428
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=38.66 E-value=3.8e+02 Score=29.36 Aligned_cols=125 Identities=11% Similarity=0.130 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+.+|.|+.+. .|..+-...+.+.-..|++.+... |. ..++++.+.+++.+-. |+.-
T Consensus 108 a~A~~Aa~~G~~~~I~-----------vP~~~~~~k~~~i~~~GAeVi~v~-----~~-~~~a~~~a~~~~~~~g-~~~~ 169 (376)
T TIGR01747 108 GVAWAAQQLGQKAVVY-----------MPKGSAQERVENILNLGAECTITD-----MN-YDDTVRLAMQMAQQHG-WVVV 169 (376)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC-----CC-HHHHHHHHHHHHHhcC-cEEe
Confidence 4667899999999886 344444455667778899877764 23 3466777666554311 2110
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC------CcEEEEccCCchHHHHHhc-c----CCCC-cEEEEcCc
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE------VDALFVYTKTGHMASLLSR-C----RPDC-PIFAFTST 521 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~------a~aIvv~T~sG~tA~~lSr-~----RP~~-PIiavT~~ 521 (584)
+ ....+.. ...+..+.+....-+.|+.++++ .+.||+.+-+|.++..+++ + +|.. .|++|-+.
T Consensus 170 ---~-~~~~~~~-~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ 244 (376)
T TIGR01747 170 ---Q-DTAWEGY-EKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPD 244 (376)
T ss_pred ---c-ccccccc-ccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeC
Confidence 0 0000001 01111223344455667777663 5899999999998876655 2 4554 58888774
No 429
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=38.58 E-value=1.3e+02 Score=29.07 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHc-CCCeEEe
Q 007936 311 INHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQL-NKPVIVA 389 (584)
Q Consensus 311 V~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~-gKPvivA 389 (584)
++.+++.++ +.+..+.+.+--+.... +|++++++-.|.|+.+-.+ +.....+...|.+. ++|+|.+
T Consensus 54 a~~~~~~l~--~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 54 VEALKENLR--EINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred HHHHHHHHH--HHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEEE
Confidence 555556663 34555666554444433 6788888888877766222 34556677877777 9999987
No 430
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=38.54 E-value=2.3e+02 Score=26.40 Aligned_cols=51 Identities=29% Similarity=0.399 Sum_probs=36.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHH---------HHHHHHHHHH
Q 007936 107 TKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHR---------RVIERVRRLN 157 (584)
Q Consensus 107 tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~---------~~i~~ir~~~ 157 (584)
..+..+.-+...+.+.+++|.++|.+.+.|++-|++.+.+. ++++.++.+.
T Consensus 87 ~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 146 (216)
T smart00729 87 VEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLR 146 (216)
T ss_pred eEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 33333333556679999999999999999999998877664 4556666654
No 431
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=38.41 E-value=57 Score=35.29 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=40.5
Q ss_pred CCcccccccchHhhhcC-----CCCCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHH
Q 007936 83 SSSIEVDSVTEAELKEN-----GFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRR 148 (584)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-----~~~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~ 148 (584)
+.+.++|++|..||+-. |+ ...+||.| ||. .+.+.|+..++.|+ ++|+ .+.++..+
T Consensus 56 ~~G~g~dvaS~~El~~al~~~~G~---~~~~Iif~-gp~-K~~~~l~~a~~~gv---~i~~--Ds~~El~~ 116 (368)
T cd06840 56 EAGLGFECVSIGELDLVLKLFPDL---DPRRVLFT-PNF-AARSEYEQALELGV---NVTV--DNLHPLRE 116 (368)
T ss_pred HcCCeEEEcCHHHHHHHHHcccCC---CcceEEEc-CCC-CCHHHHHHHHHCCC---EEEE--CCHHHHHH
Confidence 45578999999998843 44 44679998 774 56888999999998 3576 55555443
No 432
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=38.20 E-value=3.8e+02 Score=28.34 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+..|.|+.+. .|..+.-..+...-..|++.+...+ .| .++.+...+++++ +.|
T Consensus 81 alA~~a~~~G~~~~v~-----------~p~~~~~~k~~~~~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~g~--- 139 (317)
T TIGR02991 81 ALAYAAAEEGVRATIC-----------MSELVPQNKVDEIRRLGAEVRIVGR-----SQ-DDAQEEVERLVAD-RGL--- 139 (317)
T ss_pred HHHHHHHHhCCCEEEE-----------cCCCCCHHHHHHHHHcCCEEEEeCC-----CH-HHHHHHHHHHHHh-cCC---
Confidence 4567899999999885 2333333344555567999876653 22 4455555554432 111
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhc-CCcEEEEccCCchHHHHHhc----cCCCCcEEEEcCc
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNL-EVDALFVYTKTGHMASLLSR----CRPDCPIFAFTST 521 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l-~a~aIvv~T~sG~tA~~lSr----~RP~~PIiavT~~ 521 (584)
+...+... + ...+....-+.|+.+++ +.++||+..-+|.+..-+++ ++|...|+++-+.
T Consensus 140 ------~~~~~~~n--~-~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 140 ------TMLPPFDH--P-DIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred ------EeeCCCCC--h-HHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 11111111 1 22233445667777776 45789999999998877665 4699999999885
No 433
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=38.13 E-value=79 Score=34.73 Aligned_cols=120 Identities=21% Similarity=0.195 Sum_probs=63.3
Q ss_pred HhHhcCCCEEEEc---CCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHH-Hh-CCEEEEeCCcccc----
Q 007936 291 FGITEGVDFIAIS---FVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEII-LA-SDGAMVARGDLGA---- 361 (584)
Q Consensus 291 ~al~~gvD~I~lS---fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl-~~-sDGImIaRGDLg~---- 361 (584)
+.+..|.|.|.=| -+.|.+|+.++.+.|+. .+...+|-.|+=.-..++.+...+ +. +|.|.|.=++=|.
T Consensus 167 R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~--~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap 244 (368)
T PF01645_consen 167 RGVPPGVDLISPPPHHDIYSIEDLAQLIEELRE--LNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAP 244 (368)
T ss_dssp HTS-TT--EE--SS-TT-SSHHHHHHHHHHHHH--H-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEE
T ss_pred hCCCCCCccccCCCCCCcCCHHHHHHHHHHHHh--hCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCc
Confidence 4466777776643 47788888888888853 345678999996655555444422 22 7999998665332
Q ss_pred -----cCCCCChHHHHHHHHHHHHHcC---CCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 362 -----QIPLEQVPSAQQKIVQLCRQLN---KPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 362 -----ei~~e~V~~~Qk~II~~c~~~g---KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+.|++ +.....+..+...+.| +..++++-=| .--.||+.++..|||++.+.
T Consensus 245 ~~~~d~~GlP-~~~~l~~a~~~L~~~glr~~V~Li~sGgl-----------~t~~dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 245 LTSMDHVGLP-TEYALARAHQALVKNGLRDRVSLIASGGL-----------RTGDDVAKALALGADAVYIG 303 (368)
T ss_dssp CCHHHHC----HHHHHHHHHHHHHCTT-CCCSEEEEESS-------------SHHHHHHHHHCT-SEEE-S
T ss_pred hhHHhhCCCc-HHHHHHHHHHHHHHcCCCCceEEEEeCCc-----------cCHHHHHHHHhcCCCeeEec
Confidence 22332 2233334444444433 4444443322 23578999999999999875
No 434
>PRK15456 universal stress protein UspG; Provisional
Probab=38.08 E-value=59 Score=29.40 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=27.2
Q ss_pred HHHHHhhcCCcEEEEccCC--------chHHHHHhccCCCCcEEEE
Q 007936 481 AAKMANNLEVDALFVYTKT--------GHMASLLSRCRPDCPIFAF 518 (584)
Q Consensus 481 av~~A~~l~a~aIvv~T~s--------G~tA~~lSr~RP~~PIiav 518 (584)
.++.|++.++++||+-|+. |+++..+.+. -+|||+.+
T Consensus 97 I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~-a~~pVLvV 141 (142)
T PRK15456 97 VNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRH-ANLPVLVV 141 (142)
T ss_pred HHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHc-CCCCEEEe
Confidence 4667889999999998863 5566666665 45888875
No 435
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=38.02 E-value=1.8e+02 Score=25.78 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=31.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHH
Q 007936 105 RRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTRE 144 (584)
Q Consensus 105 r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e 144 (584)
...++..+..+...+.+.++.|.+.|++.+++++...+.+
T Consensus 75 ~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~ 114 (166)
T PF04055_consen 75 RGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEE 114 (166)
T ss_dssp TTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHH
T ss_pred cccceeeeccccchhHHHHHHHHhcCccEEecccccCCHH
Confidence 3445554444444449999999999999999999999987
No 436
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.97 E-value=27 Score=37.07 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=32.0
Q ss_pred hhcCCcEEEEccCCchHHHHHhc----cCCCCcEEEEcCch
Q 007936 486 NNLEVDALFVYTKTGHMASLLSR----CRPDCPIFAFTSTT 522 (584)
Q Consensus 486 ~~l~a~aIvv~T~sG~tA~~lSr----~RP~~PIiavT~~~ 522 (584)
.+..+|.++|-|.+|+||..+|. ..|.++.+.+||-.
T Consensus 175 ~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~vtPi~ 215 (305)
T PRK02645 175 DQYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPIC 215 (305)
T ss_pred EEEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEEEecC
Confidence 35689999999999999999997 46889999999953
No 437
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=37.87 E-value=92 Score=31.06 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=41.2
Q ss_pred EEEecccchhcccCCCCEEEEeCCeeEEEEEEEeCCeEEEEEEcC-------ceeCCCceeeec
Q 007936 209 TITVNYDGFAEDVKVGDELLVDGGMVRFEVIEKIGPDVKCRCTDP-------GLLLPRANLTFW 265 (584)
Q Consensus 209 ~i~v~~~~~~~~v~vGd~I~idDG~i~l~V~~~~~~~i~c~v~~~-------G~l~s~Kgvnf~ 265 (584)
.+.+..+..+.++++||.|-+|+ +.|.|.++.++.+...+... |.++...-||+.
T Consensus 23 ~~~i~~~~~~~~l~~g~SIAvnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~l~~G~~VNLE 84 (194)
T PRK09289 23 RLTIEAGKLLSDLKLGDSIAVNG--VCLTVTEIDGDSFTVDVSPETLRRTNLGDLKVGDRVNLE 84 (194)
T ss_pred EEEEEcCccccccccCCEEEEcc--EEEEEEEEcCCEEEEEEEHHHhhhCchhhccCCCEEEEe
Confidence 45555555556699999999987 99999999988887766543 666677777744
No 438
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=37.79 E-value=4e+02 Score=26.12 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=59.7
Q ss_pred HHhHhcCCCEEEEcC----------------CCCHHHHHHHHHHHHhhcCCCCceEEEeecC----H-HHHhcHHHHHHh
Q 007936 290 DFGITEGVDFIAISF----------------VKSAEVINHLKSYIAARSRDSDIAVIAKIES----I-DSLKNLEEIILA 348 (584)
Q Consensus 290 ~~al~~gvD~I~lSf----------------V~saedV~~lr~~l~~~~~~~~i~IiAKIEt----~-~av~NldeIl~~ 348 (584)
+.+.+.|+|+|=+.+ .++.+-+.++.+.+++ ..+ +.+..|+-. . +.++-+..+.+.
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~-~~~--~~v~vk~r~~~~~~~~~~~~~~~l~~~ 150 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVRE-AVP--IPVTVKIRLGWDDEEETLELAKALEDA 150 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHH-hcC--CCEEEEEeeccCCchHHHHHHHHHHHh
Confidence 455567999987653 3456556666665532 122 567777731 1 222223333332
Q ss_pred -CCEEEEeCCcccc-cCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHc-ccceEeec
Q 007936 349 -SDGAMVARGDLGA-QIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQ-RADALMLS 424 (584)
Q Consensus 349 -sDGImIaRGDLg~-ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~-G~D~imLs 424 (584)
+|.|.+.-+.-.. ..+...+. .+-+.++..+.|++... ..-+. .|+..++.. |+|++|+.
T Consensus 151 Gvd~i~v~~~~~~~~~~~~~~~~----~~~~i~~~~~ipvi~~G---------gi~~~---~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 151 GASALTVHGRTREQRYSGPADWD----YIAEIKEAVSIPVIANG---------DIFSL---EDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCCEEEECCCCHHHcCCCCCCHH----HHHHHHhCCCCeEEEeC---------CCCCH---HHHHHHHHhcCCCEEEEc
Confidence 5778665432100 11112222 22223334578888753 22333 455666666 89999997
No 439
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=37.77 E-value=4.2e+02 Score=27.94 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=59.4
Q ss_pred HHhHhcCCCEEEEcCC----------------CCHHHHHHHHHHHHhhcCCCCceEEEee-----cCH-HHHhcHHHHHH
Q 007936 290 DFGITEGVDFIAISFV----------------KSAEVINHLKSYIAARSRDSDIAVIAKI-----ESI-DSLKNLEEIIL 347 (584)
Q Consensus 290 ~~al~~gvD~I~lSfV----------------~saedV~~lr~~l~~~~~~~~i~IiAKI-----Et~-~av~NldeIl~ 347 (584)
+.+.+.|+|+|=+.+- ++++-+.++.+.++. . -.+.|.+|| ++. +.++-+..+.+
T Consensus 82 ~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~-~--~~~pv~vKir~g~~~~~~~~~~~a~~l~~ 158 (319)
T TIGR00737 82 KINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVD-A--VDIPVTVKIRIGWDDAHINAVEAARIAED 158 (319)
T ss_pred HHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHh-h--cCCCEEEEEEcccCCCcchHHHHHHHHHH
Confidence 3455678998866432 233444444444421 1 237899998 222 12222222222
Q ss_pred h-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHH-HcccceEeec
Q 007936 348 A-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAV-RQRADALMLS 424 (584)
Q Consensus 348 ~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav-~~G~D~imLs 424 (584)
. +|+|-|....- .-+... +...+.+-+.....++|||... ..-|.. |+..++ ..|+|++|+.
T Consensus 159 ~G~d~i~vh~r~~--~~~~~~-~~~~~~i~~i~~~~~ipvi~nG---------gI~~~~---da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 159 AGAQAVTLHGRTR--AQGYSG-EANWDIIARVKQAVRIPVIGNG---------DIFSPE---DAKAMLETTGCDGVMIG 222 (319)
T ss_pred hCCCEEEEEcccc--cccCCC-chhHHHHHHHHHcCCCcEEEeC---------CCCCHH---HHHHHHHhhCCCEEEEC
Confidence 2 68887742111 111111 1223334444455689998753 344444 555666 4689999995
No 440
>PRK08198 threonine dehydratase; Provisional
Probab=37.77 E-value=3.5e+02 Score=29.46 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=88.6
Q ss_pred ceEEEeecCHH---HH-----hc-HHHHHHh--CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHh
Q 007936 327 IAVIAKIESID---SL-----KN-LEEIILA--SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLES 395 (584)
Q Consensus 327 i~IiAKIEt~~---av-----~N-ldeIl~~--sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeS 395 (584)
..|+.|.|+.+ +. -| +....+. .++|+.+-+ | ..=.-+...|+.+|.|+.+.
T Consensus 37 ~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSs------G-----N~g~alA~~a~~~G~~~~iv------ 99 (404)
T PRK08198 37 AEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASA------G-----NHAQGVAYAASLLGIKATIV------ 99 (404)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECC------C-----HHHHHHHHHHHHcCCCEEEE------
Confidence 46999999874 11 11 2222211 356555421 1 22234567899999999886
Q ss_pred hhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcChHH
Q 007936 396 MIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREEKRHEAMELPDVGSSFAESISE 475 (584)
Q Consensus 396 Mi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (584)
.|.......+...-..|++.+... + . .-++++...+++++ +.+ +..++... + ...+
T Consensus 100 -----~p~~~~~~k~~~~~~~GA~Vi~~~-~----~-~~~~~~~a~~~~~~-~g~---------~~~~~~~~--~-~~~~ 155 (404)
T PRK08198 100 -----MPETAPLSKVKATRSYGAEVVLHG-D----V-YDEALAKAQELAEE-TGA---------TFVHPFDD--P-DVIA 155 (404)
T ss_pred -----ECCCCCHHHHHHHHhCCCEEEEEC-C----C-HHHHHHHHHHHHHh-cCC---------EecCCCCC--c-cHHH
Confidence 233333333455566899887653 2 2 34666555554432 111 11122111 1 1223
Q ss_pred HHHHHHHHHHhhc-CCcEEEEccCCchHHHHHh----ccCCCCcEEEEcCchh
Q 007936 476 EICNSAAKMANNL-EVDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTTS 523 (584)
Q Consensus 476 ~ia~sav~~A~~l-~a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~~ 523 (584)
....-+.|+.+++ +.++||+..-+|.+..-++ .+.|.+.||++-+...
T Consensus 156 g~~t~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~ 208 (404)
T PRK08198 156 GQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGA 208 (404)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 3344566666666 4688999999998775544 5689999999998643
No 441
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=37.73 E-value=4.2e+02 Score=26.45 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=66.1
Q ss_pred HHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCCh
Q 007936 290 DFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQV 368 (584)
Q Consensus 290 ~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V 368 (584)
+.+++.|+..|=+.+ +++...+.++.+.+ ..+. .++.-.=|.--.+.++..++. +|+++.+
T Consensus 29 ~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~--~~~~--~~~iGaGTV~~~~~~~~a~~aGA~fivsp------------- 90 (206)
T PRK09140 29 GALIEAGFRAIEIPL-NSPDPFDSIAALVK--ALGD--RALIGAGTVLSPEQVDRLADAGGRLIVTP------------- 90 (206)
T ss_pred HHHHHCCCCEEEEeC-CCccHHHHHHHHHH--HcCC--CcEEeEEecCCHHHHHHHHHcCCCEEECC-------------
Confidence 456788899888885 77777777776663 2222 122223333344556666666 7777752
Q ss_pred HHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 369 PSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 369 ~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
..-..+++.|+..|.|++.-+. | .+++..|...|+|.+.+
T Consensus 91 -~~~~~v~~~~~~~~~~~~~G~~-----------t---~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 91 -NTDPEVIRRAVALGMVVMPGVA-----------T---PTEAFAALRAGAQALKL 130 (206)
T ss_pred -CCCHHHHHHHHHCCCcEEcccC-----------C---HHHHHHHHHcCCCEEEE
Confidence 2335678899999999886521 2 24568888999999987
No 442
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=37.53 E-value=2.9e+02 Score=28.40 Aligned_cols=53 Identities=6% Similarity=0.030 Sum_probs=40.4
Q ss_pred HHhhcCCcEEEEccCCchHHHHHhccCCCCcEEEEcCchhhhcccccccccEEE
Q 007936 484 MANNLEVDALFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLRWGLIPF 537 (584)
Q Consensus 484 ~A~~l~a~aIvv~T~sG~tA~~lSr~RP~~PIiavT~~~~~aR~l~l~~GV~P~ 537 (584)
+..+.+|++|++-..+...++.+++. +..|+++.-.....-=|.-..+++.-+
T Consensus 164 ay~~AGAd~i~~e~~~~e~~~~i~~~-~~~P~~~~gag~~~dgq~lv~~d~lg~ 216 (240)
T cd06556 164 AYAPAGADLIVMECVPVELAKQITEA-LAIPLAGIGAGSGTDGQFLVLADAFGI 216 (240)
T ss_pred HHHHcCCCEEEEcCCCHHHHHHHHHh-CCCCEEEEecCcCCCceEEeHHhhhcc
Confidence 34567999999998888999999985 789999987666665566666666444
No 443
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=37.29 E-value=77 Score=34.82 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=44.7
Q ss_pred ccccccchHhhh---cCCCCCCCCceEEEecCCCCCCHHHHHHHHHh---cCCEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 007936 86 IEVDSVTEAELK---ENGFRSTRRTKLVCTIGPATCGFEQLEALAVG---GMNVARINMCHGTREWHRRVIERVRRLNEE 159 (584)
Q Consensus 86 ~~~~~~~~~~~~---~~~~~~~r~tKIi~TiGPa~~~~e~l~~li~~---Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e 159 (584)
.++|++|..||. ..|+.. .+|+..=| ..+.+.|+..+.+ |.++ +||+-. .++ ++.+.++.++
T Consensus 66 ~g~DvaS~~El~~al~~G~~~---~~ii~~~g--~K~~~~l~~a~~~~~~g~~v-~i~vDs--~~E----L~~l~~~a~~ 133 (409)
T cd06830 66 IGLEAGSKPELLAALALLKTP---DALIICNG--YKDDEYIELALLARKLGHNV-IIVIEK--LSE----LDLILELAKK 133 (409)
T ss_pred eeEEeCCHHHHHHHHhcCCCC---CCEEEECC--cCCHHHHHHHHhcCcCCceE-EEEECC--HHH----HHHHHHHHHH
Confidence 789999999998 455532 33555433 5668899998887 6677 777754 444 3444444445
Q ss_pred hCCceEEEe
Q 007936 160 KGFAVAIMM 168 (584)
Q Consensus 160 ~~~~i~I~l 168 (584)
.+.++.|++
T Consensus 134 ~~~~~~v~l 142 (409)
T cd06830 134 LGVKPLLGV 142 (409)
T ss_pred cCCCceEEE
Confidence 444444443
No 444
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=37.28 E-value=68 Score=28.01 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCcEEEEccCC---------chHHHHHhccCCCCcEEEE
Q 007936 477 ICNSAAKMANNLEVDALFVYTKT---------GHMASLLSRCRPDCPIFAF 518 (584)
Q Consensus 477 ia~sav~~A~~l~a~aIvv~T~s---------G~tA~~lSr~RP~~PIiav 518 (584)
++...++.+++.+++.|++-++. |+++..+.++-|+|||+.+
T Consensus 73 ~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 73 VAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 45566777889999999998872 6889999998899999865
No 445
>PLN00011 cysteine synthase
Probab=37.22 E-value=4.5e+02 Score=27.90 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=70.4
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+.+|.|+.+. .|..+.-..+...-..|++.++-..+ .+ .-+.++..+++.++...+
T Consensus 83 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~~--~~~~~~~a~~l~~~~~~~--- 144 (323)
T PLN00011 83 GLACIGAARGYKVILV-----------MPSTMSLERRIILRALGAEVHLTDQS--IG--LKGMLEKAEEILSKTPGG--- 144 (323)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCCCHHHHHHHHHcCCEEEEECCC--cC--hHHHHHHHHHHHHhCCCe---
Confidence 3456899999999886 34443334455566789998775432 11 112333333332210001
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhc--CCcEEEEccCCchHHHH----HhccCCCCcEEEEcCchh
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNL--EVDALFVYTKTGHMASL----LSRCRPDCPIFAFTSTTS 523 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l--~a~aIvv~T~sG~tA~~----lSr~RP~~PIiavT~~~~ 523 (584)
+...+... +.+........+.|+.+++ ..++||+.+=+|.|..- +-.++|.+.|+++-+...
T Consensus 145 ------~~~~~~~n--~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~ 212 (323)
T PLN00011 145 ------YIPQQFEN--PANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVES 212 (323)
T ss_pred ------EEeccccC--CccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCC
Confidence 11111111 1122112344566676665 48999999999987754 445689999999998643
No 446
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=37.15 E-value=2.1e+02 Score=29.77 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=52.6
Q ss_pred HHHHHHh--CCEEEEeCCcccccCCCCChHHHHHHHHHHHHH---cCCCeEEehhhhHhhhcCCCCChhhHHHHH-HHHH
Q 007936 342 LEEIILA--SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQ---LNKPVIVASQLLESMIEYPTPTRAEVADVS-EAVR 415 (584)
Q Consensus 342 ldeIl~~--sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~---~gKPvivATqmLeSMi~~p~PTrAEv~Dv~-nav~ 415 (584)
++..++. +||+++. | -.-|.+.-. ..-++++++.+.+ -..|+|+-+ ...+-.|+.+.+ .|..
T Consensus 27 i~~l~~~~Gv~gi~~~-G-stGE~~~Lt-~~Er~~~~~~~~~~~~~~~~viagv---------~~~~~~~ai~~a~~a~~ 94 (288)
T cd00954 27 VDYLIEKQGVDGLYVN-G-STGEGFLLS-VEERKQIAEIVAEAAKGKVTLIAHV---------GSLNLKESQELAKHAEE 94 (288)
T ss_pred HHHHHhcCCCCEEEEC-c-CCcCcccCC-HHHHHHHHHHHHHHhCCCCeEEecc---------CCCCHHHHHHHHHHHHH
Confidence 4444454 6898875 2 222222212 1223334443332 235777642 233445555544 5789
Q ss_pred cccceEeecCCCCCCCChHHHHHHHHHHHHHH
Q 007936 416 QRADALMLSGESAMGQFPDKALTVLRSVSLRI 447 (584)
Q Consensus 416 ~G~D~imLs~ETa~G~yPveaV~~m~~I~~~a 447 (584)
.|+|++|+..--....-+.+.++..+.|+..+
T Consensus 95 ~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 95 LGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred cCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999998755443334577888888888766
No 447
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=37.12 E-value=4.7e+02 Score=26.67 Aligned_cols=128 Identities=17% Similarity=0.172 Sum_probs=68.4
Q ss_pred cCHhhhHHhHhcCCCEEEEc--CCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHH-------------------HhcH
Q 007936 284 KDWLDIDFGITEGVDFIAIS--FVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDS-------------------LKNL 342 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lS--fV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~a-------------------v~Nl 342 (584)
.+.+|++..+..|++.|.+. ++++++-+.++.+.. +.+ +|+.-|....+ -.++
T Consensus 84 ~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~-----~~~-~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~ 157 (254)
T TIGR00735 84 KSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRF-----GSQ-CIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDA 157 (254)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHc-----CCC-CEEEEEEeccCCCCCCccEEEEEeCCcccCCCCH
Confidence 35778888899999988775 456777776666554 110 22332321111 1122
Q ss_pred HHHH----Hh-CCEEEEeCCcccccC--CCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHH
Q 007936 343 EEII----LA-SDGAMVARGDLGAQI--PLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR 415 (584)
Q Consensus 343 deIl----~~-sDGImIaRGDLg~ei--~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~ 415 (584)
.+++ +. +|.|.+- |+..+- +-..+. . +-+.+...+.|+|.+.. .- ...|+..+..
T Consensus 158 ~~~~~~l~~~G~~~iivt--~i~~~g~~~g~~~~-~---~~~i~~~~~ipvia~GG---------i~---s~~di~~~~~ 219 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLT--SMDKDGTKSGYDLE-L---TKAVSEAVKIPVIASGG---------AG---KPEHFYEAFT 219 (254)
T ss_pred HHHHHHHHHcCCCEEEEe--CcCcccCCCCCCHH-H---HHHHHHhCCCCEEEeCC---------CC---CHHHHHHHHH
Confidence 3333 22 6888873 222211 111222 1 22233445899998753 22 3456666677
Q ss_pred cc-cceEeecCCCCCCCChHH
Q 007936 416 QR-ADALMLSGESAMGQFPDK 435 (584)
Q Consensus 416 ~G-~D~imLs~ETa~G~yPve 435 (584)
.| +|+++++.==-.|+++++
T Consensus 220 ~g~~dgv~~g~a~~~~~~~~~ 240 (254)
T TIGR00735 220 KGKADAALAASVFHYREITIG 240 (254)
T ss_pred cCCcceeeEhHHHhCCCCCHH
Confidence 67 999988633335566544
No 448
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.05 E-value=30 Score=36.87 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=30.7
Q ss_pred hcCCcEEEEccCCchHHHHHhc----cCCCCcEEEEcCc
Q 007936 487 NLEVDALFVYTKTGHMASLLSR----CRPDCPIFAFTST 521 (584)
Q Consensus 487 ~l~a~aIvv~T~sG~tA~~lSr----~RP~~PIiavT~~ 521 (584)
...+|.++|-|.+|+||..+|. ..|.++.+.+||=
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI 216 (305)
T PRK02649 178 DIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPI 216 (305)
T ss_pred EEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEEEec
Confidence 5689999999999999999997 4578899999884
No 449
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=37.03 E-value=1.1e+02 Score=32.46 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=47.0
Q ss_pred eEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCce
Q 007936 108 KLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAV 164 (584)
Q Consensus 108 KIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i 164 (584)
.+..-+ ..+ +.+.+++.+++|.+..=|..||-+.++..+.-+.++++...+|.++
T Consensus 79 PV~lHL-DH~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 79 PVAIHL-DHG-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred cEEEEC-CCC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 344444 445 7999999999999999999999999999999999999998888666
No 450
>PRK08185 hypothetical protein; Provisional
Probab=36.99 E-value=1.6e+02 Score=31.21 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=48.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCce
Q 007936 107 TKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAV 164 (584)
Q Consensus 107 tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i 164 (584)
..+..-+ ..+.+.|.+++.+++|.+.+=|.-||-+.++..+.-+.+.++...+|.++
T Consensus 69 vPV~lHL-DHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 69 VPFVIHL-DHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred CCEEEEC-CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 4455444 56668999999999999999999999999999999999998888887666
No 451
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=36.83 E-value=5e+02 Score=27.78 Aligned_cols=155 Identities=18% Similarity=0.123 Sum_probs=0.0
Q ss_pred ccccCCCCCccCHhhhHHhHhc-CCCEEEEcCCC------------CH----HHHHHHHHHHHhhcCCCCceEEEeec--
Q 007936 274 RNAMLPTISPKDWLDIDFGITE-GVDFIAISFVK------------SA----EVINHLKSYIAARSRDSDIAVIAKIE-- 334 (584)
Q Consensus 274 ~~~~lp~lt~kD~~dI~~al~~-gvD~I~lSfV~------------sa----edV~~lr~~l~~~~~~~~i~IiAKIE-- 334 (584)
.++..+.+.+.+++++..+++. ++|++.+ .++ +- +.++.+++.+ +++|+.|+=
T Consensus 118 ~nl~~~~~~~~~~~~~~~~i~~i~adal~i-~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~-------~vPVivK~~g~ 189 (333)
T TIGR02151 118 ANIGAPQLVEGGPEEAQEAIDMIEADALAI-HLNVLQELVQPEGDRNFKGWLEKIAEICSQL-------SVPVIVKEVGF 189 (333)
T ss_pred eecCchhhccccHHHHHHHHHHhcCCCEEE-cCcccccccCCCCCcCHHHHHHHHHHHHHhc-------CCCEEEEecCC
Q ss_pred -CHHHHhcHHHHHHh-CCEEEEeCCccccc---------------CCCCChHHHHHHHHHHHHH--cCCCeEEehhhhHh
Q 007936 335 -SIDSLKNLEEIILA-SDGAMVARGDLGAQ---------------IPLEQVPSAQQKIVQLCRQ--LNKPVIVASQLLES 395 (584)
Q Consensus 335 -t~~av~NldeIl~~-sDGImIaRGDLg~e---------------i~~e~V~~~Qk~II~~c~~--~gKPvivATqmLeS 395 (584)
+ ..+-...+.+. +|+|-|. |--|.. .-+.++.......+..+++ .+.|+|....+-
T Consensus 190 g~--~~~~a~~L~~aGvd~I~Vs-g~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~-- 264 (333)
T TIGR02151 190 GI--SKEVAKLLADAGVSAIDVA-GAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLR-- 264 (333)
T ss_pred CC--CHHHHHHHHHcCCCEEEEC-CCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCC--
Q ss_pred hhcCCCCChhhHHHHHHHHHcccceEeecCCCCCC---CChHHHHHHHHHHHHHHhhhh
Q 007936 396 MIEYPTPTRAEVADVSEAVRQRADALMLSGESAMG---QFPDKALTVLRSVSLRIEKWW 451 (584)
Q Consensus 396 Mi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G---~yPveaV~~m~~I~~~aE~~~ 451 (584)
...|+..++..|||+++++.---.. .-|....+++..+..+...++
T Consensus 265 ----------~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m 313 (333)
T TIGR02151 265 ----------TGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAM 313 (333)
T ss_pred ----------CHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
No 452
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=36.81 E-value=3.7e+02 Score=28.92 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHHHH--HHHHHHHHhhcCCCC-ceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCcccc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAEVI--NHLKSYIAARSRDSD-IAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGA 361 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~saedV--~~lr~~l~~~~~~~~-i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~ 361 (584)
..-++.|-+.+...|+.-.-...... ..+..+++....... +.|...+....-++.+.+-++. .+-||+. |-
T Consensus 31 ~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~D----gS 106 (307)
T PRK05835 31 NAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMID----AS 106 (307)
T ss_pred HHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEe----CC
Q ss_pred cCCCCChHHHHHHHHHHHHHcCCCe--------EEehhhhHhhhc--CCCCChhhHHHHHHHHHc-ccceEeecCCCCCC
Q 007936 362 QIPLEQVPSAQQKIVQLCRQLNKPV--------IVASQLLESMIE--YPTPTRAEVADVSEAVRQ-RADALMLSGESAMG 430 (584)
Q Consensus 362 ei~~e~V~~~Qk~II~~c~~~gKPv--------ivATqmLeSMi~--~p~PTrAEv~Dv~nav~~-G~D~imLs~ETa~G 430 (584)
.+|+|+=...-+++++.|+.+|..| ..-..+...-.. ...|.-| ..++.. |+|++-.|-=|+-|
T Consensus 107 ~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA-----~~Fv~~TgvD~LAvaiGt~HG 181 (307)
T PRK05835 107 HHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEA-----EQFVKESQVDYLAPAIGTSHG 181 (307)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHH-----HHHHHhhCCCEEEEccCcccc
Q ss_pred CC-----hHHHHHHHHHHHHHH
Q 007936 431 QF-----PDKALTVLRSVSLRI 447 (584)
Q Consensus 431 ~y-----PveaV~~m~~I~~~a 447 (584)
.| |..-.+.|.+|..+.
T Consensus 182 ~Yk~~~~p~L~f~~L~~I~~~~ 203 (307)
T PRK05835 182 AFKFKGEPKLDFERLQEVKRLT 203 (307)
T ss_pred ccCCCCCCccCHHHHHHHHHHh
No 453
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=36.59 E-value=40 Score=34.25 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=45.7
Q ss_pred hhHHhHhcCCCEEEEcCCCC-----HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-------CCEEEEe
Q 007936 288 DIDFGITEGVDFIAISFVKS-----AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-------SDGAMVA 355 (584)
Q Consensus 288 dI~~al~~gvD~I~lSfV~s-----aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-------sDGImIa 355 (584)
.++...+.|++.|++--+.. .-|...+++..+ . ..+++|+ --++.+++++.+. +||+|+|
T Consensus 151 ~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~--~--~~ipvia----sGGi~s~~D~~~l~~~~~~GvdgV~ig 222 (241)
T PRK14024 151 VLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCA--R--TDAPVVA----SGGVSSLDDLRALAELVPLGVEGAIVG 222 (241)
T ss_pred HHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHh--h--CCCCEEE----eCCCCCHHHHHHHhhhccCCccEEEEe
Confidence 34556688999887765532 124444444442 1 2366766 2456666665542 7999999
Q ss_pred CCcccccCCCCCh
Q 007936 356 RGDLGAQIPLEQV 368 (584)
Q Consensus 356 RGDLg~ei~~e~V 368 (584)
|+=+.-.+++++.
T Consensus 223 ra~~~g~~~~~~~ 235 (241)
T PRK14024 223 KALYAGAFTLPEA 235 (241)
T ss_pred HHHHcCCCCHHHH
Confidence 9988777777654
No 454
>PTZ00344 pyridoxal kinase; Provisional
Probab=36.57 E-value=2.2e+02 Score=29.72 Aligned_cols=113 Identities=10% Similarity=0.201 Sum_probs=70.0
Q ss_pred cCCCCCccCHhhhHHhHh-----cCCCEEEEcCCCCHHHHHHHHHHHHh-hcCCCCceEEEe---------ecCHHHHhc
Q 007936 277 MLPTISPKDWLDIDFGIT-----EGVDFIAISFVKSAEVINHLKSYIAA-RSRDSDIAVIAK---------IESIDSLKN 341 (584)
Q Consensus 277 ~lp~lt~kD~~dI~~al~-----~gvD~I~lSfV~saedV~~lr~~l~~-~~~~~~i~IiAK---------IEt~~av~N 341 (584)
.-|.+++.+++++...+. ..+|.|..-|+-+++.+..+.++++. +..+.++.++.= .-..+..+.
T Consensus 53 ~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~ 132 (296)
T PTZ00344 53 KGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDA 132 (296)
T ss_pred cCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHH
Confidence 345677777777766553 36799999999999999999999953 122222334322 234566666
Q ss_pred HHHHHHhCCEEEEeCCcccccCCCC--ChHHHHHHHHHHHHHcCCCeEEeh
Q 007936 342 LEEIILASDGAMVARGDLGAQIPLE--QVPSAQQKIVQLCRQLNKPVIVAS 390 (584)
Q Consensus 342 ldeIl~~sDGImIaRGDLg~ei~~e--~V~~~Qk~II~~c~~~gKPvivAT 390 (584)
+.+++..+|.+....-++..=.+.+ ....+ +...+...+.|...++.|
T Consensus 133 ~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~-~~~~~~l~~~g~~~VvVT 182 (296)
T PTZ00344 133 YRELIPYADVITPNQFEASLLSGVEVKDLSDA-LEAIDWFHEQGIPVVVIT 182 (296)
T ss_pred HHHHhhhCCEEeCCHHHHHHHhCCCCCCHHHH-HHHHHHHHHhCCCEEEEE
Confidence 7788888999888777765433432 22222 233444444566655545
No 455
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=36.56 E-value=2.6e+02 Score=26.97 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhCCceEEEeecCCCeEEEeecCCCCceEeeCCCEEEEeecc-cCCCC---CCCEEEeccc--chhccc
Q 007936 148 RVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLSGPPSARAEDGEIWTFTVRA-FDSPR---PERTITVNYD--GFAEDV 221 (584)
Q Consensus 148 ~~i~~ir~~~~e~~~~i~I~lDl~GpkIR~G~~~~~~~i~l~~G~~v~~t~~~-~~~~~---~~~~i~v~~~--~~~~~v 221 (584)
.+=..|+.+++.+...--+ +..+.+++.|..- .+....|++.+|+.-. ..+.. ....|++..| .-+-.-
T Consensus 58 ~~e~RI~~L~~~L~~A~ii--~~~~~~V~~Gs~V---tl~~~~g~~~~~~IVg~~e~d~~~~~~~~IS~~SPlG~ALlGk 132 (158)
T PRK05892 58 RLDDRINELDRRLRTGPTP--WSGSETLPGGTEV---TLRFPDGEVETMHVISVVEETPVGREAETLTADSPLGQALAGH 132 (158)
T ss_pred HHHHHHHHHHHHHHhCEEe--cCCCCEEEcCcEE---EEEECCCCEEEEEEeCchhcCcccccCCEEccCCHHHHHHhCC
Confidence 3444566666665533222 6666788888541 1333467776665431 11111 2346666544 122346
Q ss_pred CCCCEEEEe--CCeeEEEEEEEeC
Q 007936 222 KVGDELLVD--GGMVRFEVIEKIG 243 (584)
Q Consensus 222 ~vGd~I~id--DG~i~l~V~~~~~ 243 (584)
++||.|-+. +|...++|+++..
T Consensus 133 ~vGD~v~v~~p~g~~~~eI~~I~~ 156 (158)
T PRK05892 133 QAGDTVTYSTPQGPAQVELLAVKL 156 (158)
T ss_pred CCCCEEEEEcCCCcEEEEEEEEEc
Confidence 899999986 7888999988753
No 456
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=36.48 E-value=5.7e+02 Score=27.48 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCC----CCChhhHHHHHHHHHcccceEeecCC------CCCCCChHHHH
Q 007936 368 VPSAQQKIVQLCRQLNKPVIVASQLLESMIEYP----TPTRAEVADVSEAVRQRADALMLSGE------SAMGQFPDKAL 437 (584)
Q Consensus 368 V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p----~PTrAEv~Dv~nav~~G~D~imLs~E------Ta~G~yPveaV 437 (584)
+..+.+++-+ ++ .+.|+|+. +-.+. .-.-+|...++..+.+++|++.|+-- -..+++|-...
T Consensus 124 ~~~~~~~l~~-~~-~~~pvivs------I~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~ 195 (344)
T PRK05286 124 ADALAERLKK-AY-RGIPLGIN------IGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALD 195 (344)
T ss_pred HHHHHHHHHH-hc-CCCcEEEE------EecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHH
Confidence 3444444332 33 68999985 22221 12346677777777788999998521 22377888777
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccCC-CCCCCCCcChHHHHHHHHHHHHhhcCCcEEEEccCC
Q 007936 438 TVLRSVSLRIEKWWREEKRHEAMELP-DVGSSFAESISEEICNSAAKMANNLEVDALFVYTKT 499 (584)
Q Consensus 438 ~~m~~I~~~aE~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ia~sav~~A~~l~a~aIvv~T~s 499 (584)
++++.+-....... ..++.- .++ +....+. ....++.+.+.++++|++..++
T Consensus 196 eiv~aVr~~~~~~~------~~~PV~vKls---p~~~~~~-~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 196 ELLAALKEAQAELH------GYVPLLVKIA---PDLSDEE-LDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHHHHHHHHhccc------cCCceEEEeC---CCCCHHH-HHHHHHHHHHhCCcEEEEeCCc
Confidence 77777655443100 001100 011 1111112 2344556677799999998753
No 457
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=36.32 E-value=2.3e+02 Score=28.83 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=71.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHH------
Q 007936 299 FIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQ------ 372 (584)
Q Consensus 299 ~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Q------ 372 (584)
.|.+=-..+.++...+.+.+-+.+. ..|=.-.-|+.+.+-|.++.+....++||-|=. +..+.+..++
T Consensus 15 vI~Vlr~~~~e~a~~~a~Ali~gGi---~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTV---L~~~q~~~a~~aGa~f 88 (211)
T COG0800 15 VVPVIRGDDVEEALPLAKALIEGGI---PAIEITLRTPAALEAIRALAKEFPEALIGAGTV---LNPEQARQAIAAGAQF 88 (211)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHcCC---CeEEEecCCCCHHHHHHHHHHhCcccEEccccc---cCHHHHHHHHHcCCCE
Confidence 3555566777877777777643221 235556678889999999988888888887632 2223333333
Q ss_pred -------HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEee
Q 007936 373 -------QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALML 423 (584)
Q Consensus 373 -------k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imL 423 (584)
.++++.|+.+|.|++ |--+-.+++..|.+.|++++=+
T Consensus 89 iVsP~~~~ev~~~a~~~~ip~~--------------PG~~TptEi~~Ale~G~~~lK~ 132 (211)
T COG0800 89 IVSPGLNPEVAKAANRYGIPYI--------------PGVATPTEIMAALELGASALKF 132 (211)
T ss_pred EECCCCCHHHHHHHHhCCCccc--------------CCCCCHHHHHHHHHcChhheee
Confidence 589999999999987 3333445668899999998754
No 458
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=36.31 E-value=1.4e+02 Score=29.84 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 311 INHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 311 V~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
++.+++.+ ++.+.++.|-+--+.. .-+|++++++-.|.|+.+-.+. .....+-+.|+++++|+|.+
T Consensus 77 a~~~~~~l--~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~~----------~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 77 AEAAAERL--RAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDNF----------ATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHH--HHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 44555555 3345555555443333 2368888888899988863332 45677889999999999986
No 459
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=36.19 E-value=2.6e+02 Score=29.64 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 007936 374 KIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWRE 453 (584)
Q Consensus 374 ~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 453 (584)
-+...|+.+|.|+.+. .|..+.-..+...-..|++.+...+ .+.-.+.+....+.++-..++
T Consensus 65 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~l~~~GA~v~~~~~-----~~~~~~~~~~~~l~~~~~~~~-- 126 (316)
T cd06448 65 AAAYAARKLGVPCTIV-----------VPESTKPRVVEKLRDEGATVVVHGK-----VWWEADNYLREELAENDPGPV-- 126 (316)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEECC-----chHHHHHHHHHHHHhccCCcE--
Confidence 4567899999999886 3433333345555578999777542 212233333333322110111
Q ss_pred hhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC----CcEEEEccCCchHHHHHh----ccC-CCCcEEEEcCch
Q 007936 454 EKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE----VDALFVYTKTGHMASLLS----RCR-PDCPIFAFTSTT 522 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~----a~aIvv~T~sG~tA~~lS----r~R-P~~PIiavT~~~ 522 (584)
...+... + ...+....-+.|+.++++ .++||+..-+|.+..-++ .+. |.++|++|-+..
T Consensus 127 -------~~~~~~n--~-~~~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g 194 (316)
T cd06448 127 -------YVHPFDD--P-LIWEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEG 194 (316)
T ss_pred -------EeCCCCC--c-hhhccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 1111111 1 111122233566666664 689999999998876554 344 999999998854
No 460
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=36.01 E-value=1.4e+02 Score=30.43 Aligned_cols=67 Identities=13% Similarity=0.259 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEeh
Q 007936 311 INHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVAS 390 (584)
Q Consensus 311 V~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivAT 390 (584)
+..+++.++ +.+.++.|-+--+..+. +|++++++-+|.|+-+-.+ +.....+-+.|+++++|++.+.
T Consensus 80 a~~a~~~l~--~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D~----------~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 80 VESAKDALT--QINPHIAINPINAKLDD-AELAALIAEHDIVVDCTDN----------VEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHH--HHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 334445552 33556666554443333 5788888888988875222 3567778899999999999863
No 461
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=35.83 E-value=89 Score=34.15 Aligned_cols=89 Identities=24% Similarity=0.289 Sum_probs=52.0
Q ss_pred HHhHhcCCCEEEE-----------cCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh--CCEEEEeC
Q 007936 290 DFGITEGVDFIAI-----------SFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA--SDGAMVAR 356 (584)
Q Consensus 290 ~~al~~gvD~I~l-----------SfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~--sDGImIaR 356 (584)
+...+.|++++.+ .+.=+-+.|+.+|+.+ . ++.+||-= +...++..+.+++. +||||+||
T Consensus 162 k~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~-----~-~ipviaNG-nI~~~~d~~~~~~~tG~dGVM~ar 234 (358)
T KOG2335|consen 162 KMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENV-----P-DIPVIANG-NILSLEDVERCLKYTGADGVMSAR 234 (358)
T ss_pred HHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhC-----c-CCcEEeeC-CcCcHHHHHHHHHHhCCceEEecc
Confidence 4556788888776 3333444555555554 1 26777631 22334455666664 89999999
Q ss_pred CcccccCCC------CChHHHHHHHHHHHHHcCCC
Q 007936 357 GDLGAQIPL------EQVPSAQQKIVQLCRQLNKP 385 (584)
Q Consensus 357 GDLg~ei~~------e~V~~~Qk~II~~c~~~gKP 385 (584)
|-|-.-.=+ ......-.+-+..|.+++-+
T Consensus 235 glL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g~ 269 (358)
T KOG2335|consen 235 GLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGGL 269 (358)
T ss_pred hhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 987433222 23344555666777777644
No 462
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=35.71 E-value=3.4e+02 Score=30.91 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 007936 373 QKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWR 452 (584)
Q Consensus 373 k~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 452 (584)
.-+...|++.|.|+.+- .|..+.-..+...-..|++.++- + ...-++.+...+++.+ +.++
T Consensus 78 ~~vA~aa~~~Gi~~~Iv-----------mP~~tp~~Kv~~~r~~GA~Vvl~-g-----~~~d~a~~~a~~la~~-~g~~- 138 (499)
T TIGR01124 78 QGVAFSAARLGLKALIV-----------MPETTPDIKVDAVRGFGGEVVLH-G-----ANFDDAKAKAIELSQE-KGLT- 138 (499)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEe-C-----cCHHHHHHHHHHHHHh-cCCE-
Confidence 34677899999998875 22222222344455679877654 2 2346666555554332 1111
Q ss_pred hhhhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC--CcEEEEccCCchHHHHHh----ccCCCCcEEEEcCchh
Q 007936 453 EEKRHEAMELPDVGSSFAESISEEICNSAAKMANNLE--VDALFVYTKTGHMASLLS----RCRPDCPIFAFTSTTS 523 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~--a~aIvv~T~sG~tA~~lS----r~RP~~PIiavT~~~~ 523 (584)
..++.. .+ .....-..-+.|+.+++. .++||+..-+|.++.-++ .++|.+.||+|-+...
T Consensus 139 --------~i~p~~--~~-~~i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~ 204 (499)
T TIGR01124 139 --------FIHPFD--DP-LVIAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDS 204 (499)
T ss_pred --------eeCCCC--Ch-HHHHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 111111 11 122223445677777774 799999999998886654 4579999999998543
No 463
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=35.68 E-value=4.6e+02 Score=26.20 Aligned_cols=133 Identities=8% Similarity=0.013 Sum_probs=0.0
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCccccc
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGDLGAQ 362 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGDLg~e 362 (584)
.+.+.+.+.|+|+|-++ ++.-.+.++|+.+ +.+..|=. +..|++|+.++ +|.+++|+=-=+..
T Consensus 70 d~~~lA~~~~adGVHlg--~~d~~~~~~r~~~-----~~~~~iG~------S~H~~~e~~~A~~~gaDYi~lgpvf~T~t 136 (211)
T PRK03512 70 DYWRLAIKHQAYGVHLG--QEDLETADLNAIR-----AAGLRLGV------STHDDMEIDVALAARPSYIALGHVFPTQT 136 (211)
T ss_pred CHHHHHHHcCCCEEEcC--hHhCCHHHHHHhc-----CCCCEEEE------eCCCHHHHHHHhhcCCCEEEECCccCCCC
Q ss_pred CCCCChHHHHHHHHHHHHH-cCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHH
Q 007936 363 IPLEQVPSAQQKIVQLCRQ-LNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLR 441 (584)
Q Consensus 363 i~~e~V~~~Qk~II~~c~~-~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~ 441 (584)
=+-..-+.--+.+-+.++. ...||+.--. -...++......|+|++-+.+.-..-.-|.++++-+.
T Consensus 137 K~~~~~~~G~~~l~~~~~~~~~~PV~AiGG-------------I~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~ 203 (211)
T PRK03512 137 KQMPSAPQGLAQLARHVERLADYPTVAIGG-------------ISLERAPAVLATGVGSIAVVSAITQAADWRAATAQLL 203 (211)
T ss_pred CCCCCCCCCHHHHHHHHHhcCCCCEEEECC-------------CCHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHH
Q ss_pred HHHH
Q 007936 442 SVSL 445 (584)
Q Consensus 442 ~I~~ 445 (584)
++..
T Consensus 204 ~~~~ 207 (211)
T PRK03512 204 ELAE 207 (211)
T ss_pred HHHh
No 464
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=35.49 E-value=62 Score=35.48 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=41.3
Q ss_pred CCcccccccchHhhh---cCCCCCCCCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHH
Q 007936 83 SSSIEVDSVTEAELK---ENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRR 148 (584)
Q Consensus 83 ~~~~~~~~~~~~~~~---~~~~~~~r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~ 148 (584)
+.+.++|++|..||. +.|+ .-.+|+.| ||. .+.+.|+..++.|++.+ |+ .+.++.++
T Consensus 57 ~~G~g~DvaS~gEl~~al~~G~---~~~~Iif~-gp~-K~~~~l~~a~~~Gv~~i--~v--DS~~El~~ 116 (394)
T cd06831 57 ALGTGFACSSKNEMALVQELGV---SPENIIYT-NPC-KQASQIKYAAKVGVNIM--TC--DNEIELKK 116 (394)
T ss_pred HcCCCeEeCCHHHHHHHHhcCC---CcCCEEEe-CCC-CCHHHHHHHHHCCCCEE--EE--CCHHHHHH
Confidence 556889999999998 4454 44679998 785 56889999999998654 43 34544443
No 465
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=35.46 E-value=1.8e+02 Score=29.14 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=45.2
Q ss_pred CCCceEEEecCCCCCC------HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCce
Q 007936 104 TRRTKLVCTIGPATCG------FEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAV 164 (584)
Q Consensus 104 ~r~tKIi~TiGPa~~~------~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i 164 (584)
..+||||++-=-...+ .+.+++|...|.|+.|+-..-.+.++..++++..++.....+.|+
T Consensus 111 ~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~~~p~ 177 (225)
T cd00502 111 KGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIPL 177 (225)
T ss_pred hCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCE
Confidence 3589999998422221 246888999999999998887788888888888777765444554
No 466
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=35.38 E-value=5.2e+02 Score=26.69 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=50.9
Q ss_pred HHHhc-HHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHH
Q 007936 337 DSLKN-LEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAV 414 (584)
Q Consensus 337 ~av~N-ldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav 414 (584)
-|+++ +++..++ +||+++- || |+|+ ..+++..|+++|...+.+ -+|..+.+.+..+...
T Consensus 102 ~G~e~f~~~~~~aGvdgviip--Dl----p~ee----~~~~~~~~~~~gl~~i~l--------v~P~T~~eri~~i~~~- 162 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVA--DL----PLEE----SGDLVEAAKKHGVKPIFL--------VAPNADDERLKQIAEK- 162 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEEC--CC----ChHH----HHHHHHHHHHCCCcEEEE--------ECCCCCHHHHHHHHHh-
Confidence 36666 3444444 7999985 33 5443 467999999999876643 1455555555555443
Q ss_pred HcccceEeec-CCCCC-CCChHHHHHHHHHHH
Q 007936 415 RQRADALMLS-GESAM-GQFPDKALTVLRSVS 444 (584)
Q Consensus 415 ~~G~D~imLs-~ETa~-G~yPveaV~~m~~I~ 444 (584)
.+|+..+|-. |=|-. ..++.+..+.++++.
T Consensus 163 ~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr 194 (256)
T TIGR00262 163 SQGFVYLVSRAGVTGARNRAASALNELVKRLK 194 (256)
T ss_pred CCCCEEEEECCCCCCCcccCChhHHHHHHHHH
Confidence 4555555442 22211 236666666666554
No 467
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=35.27 E-value=4.5e+02 Score=28.02 Aligned_cols=131 Identities=13% Similarity=0.144 Sum_probs=74.5
Q ss_pred HhHhcCCCEEEEcCCCCHHHHHHHHHHHHh-hcCCCCceEEEeec--CHHHHhcHHHHHHh--CCEEEEeCCcccccCCC
Q 007936 291 FGITEGVDFIAISFVKSAEVINHLKSYIAA-RSRDSDIAVIAKIE--SIDSLKNLEEIILA--SDGAMVARGDLGAQIPL 365 (584)
Q Consensus 291 ~al~~gvD~I~lSfV~saedV~~lr~~l~~-~~~~~~i~IiAKIE--t~~av~NldeIl~~--sDGImIaRGDLg~ei~~ 365 (584)
...+.|+|+....||.....+..-...... ...+....++.+|- +++.+...-+++.. +|+| ||.+.+|.
T Consensus 28 l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~I-----dlN~gCP~ 102 (321)
T PRK10415 28 LCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQII-----DINMGCPA 102 (321)
T ss_pred HHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEE-----EEeCCCCH
Confidence 356889999989999886543221111100 11123345678884 33443333333322 3554 56666775
Q ss_pred CC------------hHHHHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChhhHHHHHH-HHHcccceEeecCCCCCCC
Q 007936 366 EQ------------VPSAQQKIVQLCRQL-NKPVIVASQLLESMIEYPTPTRAEVADVSE-AVRQRADALMLSGESAMGQ 431 (584)
Q Consensus 366 e~------------V~~~Qk~II~~c~~~-gKPvivATqmLeSMi~~p~PTrAEv~Dv~n-av~~G~D~imLs~ETa~G~ 431 (584)
.+ =|..-++|+++.++. ++|+.+=.. ..-.++..+..+++. +...|+|++.+.+-|..+.
T Consensus 103 ~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR------~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~ 176 (321)
T PRK10415 103 KKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR------TGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACL 176 (321)
T ss_pred HHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE------ccccCCcchHHHHHHHHHHhCCCEEEEecCccccc
Confidence 32 256667777777554 789886432 111233334556665 4567999999999887655
Q ss_pred C
Q 007936 432 F 432 (584)
Q Consensus 432 y 432 (584)
|
T Consensus 177 ~ 177 (321)
T PRK10415 177 F 177 (321)
T ss_pred c
Confidence 5
No 468
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=35.26 E-value=4.5e+02 Score=25.95 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred cCHhhhHHhHhcCCCEEEEcC--CCCHHHHHHHHHHHHhhcCCCCceEEEee------------cCHHHHhcHHHHHHh-
Q 007936 284 KDWLDIDFGITEGVDFIAISF--VKSAEVINHLKSYIAARSRDSDIAVIAKI------------ESIDSLKNLEEIILA- 348 (584)
Q Consensus 284 kD~~dI~~al~~gvD~I~lSf--V~saedV~~lr~~l~~~~~~~~i~IiAKI------------Et~~av~NldeIl~~- 348 (584)
.+.+|++..++.|+|.|++.. .++++.+.++.+.. ..++.+-..+ .+......+-+.+..
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~-----~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~ 158 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKF-----PGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDA 158 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHh-----CCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhc
Q ss_pred -CCEEEEe-CCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcc-cceEeecC
Q 007936 349 -SDGAMVA-RGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQR-ADALMLSG 425 (584)
Q Consensus 349 -sDGImIa-RGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G-~D~imLs~ 425 (584)
+|.+++- +.-=+..-+.. .+.+-+.++..+.|+|.+.-+- ...|+..+...| +|++|+..
T Consensus 159 g~~~ii~~~~~~~g~~~G~d-----~~~i~~l~~~~~ipvia~GGi~------------~~~di~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSGPN-----VEATRELAAAVPIPVIASGGVS------------SLDDIKALKGLGAVEGVIVGR 221 (233)
T ss_pred CCCEEEEeeecCcCCcCCCC-----HHHHHHHHHhCCCCEEEeCCCC------------CHHHHHHHHHcCCccEEEEEH
Q ss_pred CCCCCCChHH
Q 007936 426 ESAMGQFPDK 435 (584)
Q Consensus 426 ETa~G~yPve 435 (584)
==-.|+++.+
T Consensus 222 a~~~~~~~~~ 231 (233)
T PRK00748 222 ALYEGKFDLA 231 (233)
T ss_pred HHHcCCcCcc
No 469
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=35.21 E-value=1.1e+02 Score=31.42 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=43.5
Q ss_pred eEEEee--cCHHHHhcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCCh
Q 007936 328 AVIAKI--ESIDSLKNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTR 404 (584)
Q Consensus 328 ~IiAKI--Et~~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTr 404 (584)
.-+.|| +...--+.++.+++. .|+|||| |=++++ ...-..+++.+++...||++- |..
T Consensus 9 ~h~~liDP~k~~~~~~~~~~~~~gtdai~vG-GS~~vt------~~~~~~~v~~ik~~~lPvilf------------p~~ 69 (232)
T PRK04169 9 LHVTLLDPDKPLPDEALEAICESGTDAIIVG-GSDGVT------EENVDELVKAIKEYDLPVILF------------PGN 69 (232)
T ss_pred eEEEEECCCCCCCHHHHHHHHhcCCCEEEEc-CCCccc------hHHHHHHHHHHhcCCCCEEEe------------CCC
Confidence 445555 232222334566655 7999998 444333 234456777778888999973 443
Q ss_pred hhHHHHHHHHHcccceEee
Q 007936 405 AEVADVSEAVRQRADALML 423 (584)
Q Consensus 405 AEv~Dv~nav~~G~D~imL 423 (584)
. +.+..++|++++
T Consensus 70 ~------~~i~~~aDa~l~ 82 (232)
T PRK04169 70 I------EGISPGADAYLF 82 (232)
T ss_pred c------cccCcCCCEEEE
Confidence 2 345578999876
No 470
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=35.16 E-value=4.5e+02 Score=27.80 Aligned_cols=156 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHH--HHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCccccc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAE--VINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQ 362 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~sae--dV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~e 362 (584)
+.-|+.|-+.+...|+.-.-...+ ....+..++.....+..+++...+....-++.+..-++. .+-||+....|
T Consensus 32 ~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS~l--- 108 (284)
T PRK12737 32 QVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHL--- 108 (284)
T ss_pred HHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCCCC---
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCe--------EEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCC--
Q 007936 363 IPLEQVPSAQQKIVQLCRQLNKPV--------IVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQF-- 432 (584)
Q Consensus 363 i~~e~V~~~Qk~II~~c~~~gKPv--------ivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~y-- 432 (584)
|+++=...-+++++.|++.|..| +.-...-........-+..|+.+..+.- |+|++-.+-=|+-|.|
T Consensus 109 -p~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~T--gvD~LAvaiGt~HG~y~~ 185 (284)
T PRK12737 109 -SFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERT--GIDSLAVAIGTAHGLYKG 185 (284)
T ss_pred -CHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHh--CCCEEeeccCccccccCC
Q ss_pred -hHHHHHHHHHHHHHH
Q 007936 433 -PDKALTVLRSVSLRI 447 (584)
Q Consensus 433 -PveaV~~m~~I~~~a 447 (584)
|.--.+.|++|....
T Consensus 186 ~p~Ld~~~L~~I~~~~ 201 (284)
T PRK12737 186 EPKLDFERLAEIREKV 201 (284)
T ss_pred CCcCCHHHHHHHHHHh
No 471
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=35.14 E-value=65 Score=35.22 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEeecC
Q 007936 120 FEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAIMMDTE 171 (584)
Q Consensus 120 ~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~ 171 (584)
.++|++|.++|+++.|+-.-. .+..+.++.|++.-.+.|.+++++.|+.
T Consensus 34 v~QI~~L~~aGceivRvavp~---~~~a~al~~I~~~l~~~g~~iPlVADIH 82 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAVPD---MEAAEALKEIKKRLRALGSPIPLVADIH 82 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE-S---HHHHHHHHHHHHHHHCTT-SS-EEEEES
T ss_pred HHHHHHHHHcCCCEEEEcCCC---HHHHHHHHHHHHhhccCCCCCCeeeecC
Confidence 679999999999999986654 3455677778777677889999999985
No 472
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=35.12 E-value=30 Score=39.41 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=31.5
Q ss_pred hhcCCcEEEEccCCchHHHHHhc----cCCCCcEEEEcCc
Q 007936 486 NNLEVDALFVYTKTGHMASLLSR----CRPDCPIFAFTST 521 (584)
Q Consensus 486 ~~l~a~aIvv~T~sG~tA~~lSr----~RP~~PIiavT~~ 521 (584)
....+|.+||-|.||+||..+|. ..|.++.|.+||=
T Consensus 376 ~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~l~~ivlTPI 415 (508)
T PLN02935 376 TCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPI 415 (508)
T ss_pred EEEECCcEEEecCccHHHHHHhcCCcccCCCCCeEEEEec
Confidence 35689999999999999999997 5688999999984
No 473
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.11 E-value=34 Score=36.30 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=30.6
Q ss_pred hcCCcEEEEccCCchHHHHHhc----cCCCCcEEEEcCc
Q 007936 487 NLEVDALFVYTKTGHMASLLSR----CRPDCPIFAFTST 521 (584)
Q Consensus 487 ~l~a~aIvv~T~sG~tA~~lSr----~RP~~PIiavT~~ 521 (584)
+..+|.++|-|.+|+||..+|. ..|.++.+.+||=
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI 216 (296)
T PRK04539 178 TQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPI 216 (296)
T ss_pred EEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEec
Confidence 4578999999999999999997 4678889999984
No 474
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=35.10 E-value=5.3e+02 Score=26.68 Aligned_cols=88 Identities=25% Similarity=0.382 Sum_probs=54.2
Q ss_pred CceEEEee--cCHHHHhcHHHHHHh--CCEEEEeCC-----cccccCCCCChHHHHHHHHHHHHHc-CCCeEEehhhhHh
Q 007936 326 DIAVIAKI--ESIDSLKNLEEIILA--SDGAMVARG-----DLGAQIPLEQVPSAQQKIVQLCRQL-NKPVIVASQLLES 395 (584)
Q Consensus 326 ~i~IiAKI--Et~~av~NldeIl~~--sDGImIaRG-----DLg~ei~~e~V~~~Qk~II~~c~~~-gKPvivATqmLeS 395 (584)
+.++++.| .+.+...+.-+.++. .|+|=+-=+ ..|.+++ .-+..-.+|++.+++. ++|+++=
T Consensus 89 ~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vK------ 160 (296)
T cd04740 89 GTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVK------ 160 (296)
T ss_pred CCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEE------
Confidence 46788887 555555555444433 688866311 0011111 2345667788888887 8999863
Q ss_pred hhcCCCCChhhHHHHHH-HHHcccceEeecC
Q 007936 396 MIEYPTPTRAEVADVSE-AVRQRADALMLSG 425 (584)
Q Consensus 396 Mi~~p~PTrAEv~Dv~n-av~~G~D~imLs~ 425 (584)
-.|+..|..+++. +...|+|++.+.+
T Consensus 161 ----l~~~~~~~~~~a~~~~~~G~d~i~~~n 187 (296)
T cd04740 161 ----LTPNVTDIVEIARAAEEAGADGLTLIN 187 (296)
T ss_pred ----eCCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 1355557777776 5568999998864
No 475
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.06 E-value=64 Score=36.77 Aligned_cols=50 Identities=26% Similarity=0.428 Sum_probs=41.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHH
Q 007936 105 RRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRRVIERVRR 155 (584)
Q Consensus 105 r~tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 155 (584)
.|-.+.+.+|+. ...+..+.|+++|+|+.=+..+||..++..+.|+++|+
T Consensus 230 grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~ 279 (502)
T PRK07107 230 KRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIRE 279 (502)
T ss_pred cCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHH
Confidence 355567788875 45799999999999999999999998887777777776
No 476
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=34.95 E-value=2.9e+02 Score=28.13 Aligned_cols=113 Identities=17% Similarity=0.114 Sum_probs=62.0
Q ss_pred ccCCCCEEEEeCC---eeEEEEEEEeCCeEEEEEEcCceeCC--CceeeeccCCcccCCccccCCCCCccCHhhhHHhHh
Q 007936 220 DVKVGDELLVDGG---MVRFEVIEKIGPDVKCRCTDPGLLLP--RANLTFWRDGSLVRERNAMLPTISPKDWLDIDFGIT 294 (584)
Q Consensus 220 ~v~vGd~I~idDG---~i~l~V~~~~~~~i~c~v~~~G~l~s--~Kgvnf~~~~~~lp~~~~~lp~lt~kD~~dI~~al~ 294 (584)
-+++||.|.+-|| ....++.+.+.+.+.+++...-.... ...+. ....+|. .++-..-|+.+.+
T Consensus 31 R~~~Gd~v~v~~g~g~~~~a~i~~~~~~~~~~~i~~~~~~~~~~~~~i~----------l~~al~K-~~~~d~il~katE 99 (240)
T TIGR00046 31 RLKKGDKLKLLDGDGFIYHCEIKKISKKFVKCELLEGESEKRELPLKIH----------LAIVLIK-GKKMEFIIRKLTE 99 (240)
T ss_pred cCCCCCEEEEEeCCCCEEEEEEEEEcCCeEEEEEEecccCCCCCCcEEE----------EEEeecC-CccHHHHHHHHHH
Confidence 3688999977553 35567888888888887764422211 11122 1223443 3555666788999
Q ss_pred cCCCEEEEcCCC-C--------HHHHHHHHHHHHh--hcCCCCceEEEeecCHHHHhcHHHHHHh
Q 007936 295 EGVDFIAISFVK-S--------AEVINHLKSYIAA--RSRDSDIAVIAKIESIDSLKNLEEIILA 348 (584)
Q Consensus 295 ~gvD~I~lSfV~-s--------aedV~~lr~~l~~--~~~~~~i~IiAKIEt~~av~NldeIl~~ 348 (584)
.||+-|..=+.+ | .....+.++++.+ ++++. ..+.+|+.+.. ++++++.
T Consensus 100 LGv~~i~p~~s~rs~~~~~~~~~~k~~rw~~i~~eA~~Q~~r--~~lP~i~~~~~---l~~~l~~ 159 (240)
T TIGR00046 100 LGVSKIIPFNAERSVVKLDIEAIKKLERWQKIAIEAAEQSGR--NIVPEIKPPKN---LKEKCAE 159 (240)
T ss_pred cCCCEEEEEEeccceeccCchHHHHHHHHHHHHHHHHHhcCC--CCCCEECCcCC---HHHHHhh
Confidence 999975432222 1 1234455555532 23332 34666666443 4455543
No 477
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=34.88 E-value=5.6e+02 Score=27.29 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHc-CCCeEEehhhhHhhhcCCCCChhhHHHHHHH-HHcccceEeecCCC
Q 007936 371 AQQKIVQLCRQL-NKPVIVASQLLESMIEYPTPTRAEVADVSEA-VRQRADALMLSGES 427 (584)
Q Consensus 371 ~Qk~II~~c~~~-gKPvivATqmLeSMi~~p~PTrAEv~Dv~na-v~~G~D~imLs~ET 427 (584)
.-.++++..++. .+|+++= -.|.-.++.+++.+ ...|+|++.+++-+
T Consensus 150 ~~~eiv~~v~~~~~iPv~vK----------l~p~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 150 RYLDILRAVKSAVTIPVAVK----------LSPFFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred HHHHHHHHHHhccCCCEEEE----------cCCCccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 345667766654 8999984 23544467777764 56699999997553
No 478
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=34.69 E-value=2.9e+02 Score=28.82 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=32.3
Q ss_pred HHHHHHhhc----CCcEEEEccCCchHHHHHhcc----CCCCcEEEEcC
Q 007936 480 SAAKMANNL----EVDALFVYTKTGHMASLLSRC----RPDCPIFAFTS 520 (584)
Q Consensus 480 sav~~A~~l----~a~aIvv~T~sG~tA~~lSr~----RP~~PIiavT~ 520 (584)
-+.|+.+++ ..++||+..-+|.|+--++++ +|.++||+|-+
T Consensus 156 ~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~ 204 (311)
T TIGR01275 156 AVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAV 204 (311)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 356677666 479999999999998766544 89999998854
No 479
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=34.68 E-value=1.4e+02 Score=28.10 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCc
Q 007936 120 FEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFA 163 (584)
Q Consensus 120 ~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~ 163 (584)
.+.+++++++|++.+-|..-.++...+.+.++.+++..+.+|.+
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~ 58 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVP 58 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 57899999999999999998888888888888888766554433
No 480
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=34.40 E-value=3.3e+02 Score=27.45 Aligned_cols=123 Identities=12% Similarity=0.094 Sum_probs=63.3
Q ss_pred HhhhHHhHhcCCCEEEEcC------C--CCHHHHHHHHHHHHhhcCCCCceEEEe----------e------cCHHHHhc
Q 007936 286 WLDIDFGITEGVDFIAISF------V--KSAEVINHLKSYIAARSRDSDIAVIAK----------I------ESIDSLKN 341 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSf------V--~saedV~~lr~~l~~~~~~~~i~IiAK----------I------Et~~av~N 341 (584)
.+.++.+.+.|+|+|=+.. . -+..+++++++.++.. + +.+.+- + +..++++.
T Consensus 16 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~--g--l~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~ 91 (275)
T PRK09856 16 EHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTY--Q--MPIIGYTPETNGYPYNMMLGDEHMRRESLDM 91 (275)
T ss_pred HHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHc--C--CeEEEecCcccCcCccccCCCHHHHHHHHHH
Confidence 4566788899999988742 1 2345788898888532 2 343331 0 11233444
Q ss_pred HHHHHHh-----CCEEEEeCCcccccCCC----CChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHH
Q 007936 342 LEEIILA-----SDGAMVARGDLGAQIPL----EQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE 412 (584)
Q Consensus 342 ldeIl~~-----sDGImIaRGDLg~ei~~----e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~n 412 (584)
+...++. ++.|.+..|..+-.-.. +.+...-+.+...|.+.|..+.+=+. .-...+..+|.+++.++.+
T Consensus 92 ~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~--~~~~~~~~~t~~~~~~l~~ 169 (275)
T PRK09856 92 IKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPL--TPYESNVVCNANDVLHALA 169 (275)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC--CCCcccccCCHHHHHHHHH
Confidence 4444444 46666666544322111 23334445666666676665543210 0011123445555555555
Q ss_pred HH
Q 007936 413 AV 414 (584)
Q Consensus 413 av 414 (584)
.+
T Consensus 170 ~~ 171 (275)
T PRK09856 170 LV 171 (275)
T ss_pred Hc
Confidence 44
No 481
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=34.40 E-value=4.4e+02 Score=27.87 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHH--HHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCccccc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAE--VINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQ 362 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~sae--dV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~e 362 (584)
+.-|+.|-+.+...|+--.-...+ ....+..++...-.+..+++...+.....++.+..-++. .+-||+. |-+
T Consensus 32 ~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftSVM~D----gS~ 107 (284)
T PRK12857 32 QAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTSVMID----GSK 107 (284)
T ss_pred HHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEEe----CCC
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCe--------EEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCC--
Q 007936 363 IPLEQVPSAQQKIVQLCRQLNKPV--------IVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQF-- 432 (584)
Q Consensus 363 i~~e~V~~~Qk~II~~c~~~gKPv--------ivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~y-- 432 (584)
+|+|+=...-+++++.|+..|..| ..-............-+..|+.+..+.. |+|++-.|-=|+-|.|
T Consensus 108 lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~T--gvD~LAvaiGt~HG~y~~ 185 (284)
T PRK12857 108 LPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEET--GVDALAIAIGTAHGPYKG 185 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHH--CCCEEeeccCccccccCC
Q ss_pred -hHHHHHHHHHHHHHH
Q 007936 433 -PDKALTVLRSVSLRI 447 (584)
Q Consensus 433 -PveaV~~m~~I~~~a 447 (584)
|.--...|.+|....
T Consensus 186 ~p~Ld~~~L~~i~~~~ 201 (284)
T PRK12857 186 EPKLDFDRLAKIKELV 201 (284)
T ss_pred CCcCCHHHHHHHHHHh
No 482
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=34.35 E-value=1.5e+02 Score=29.57 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=43.1
Q ss_pred HHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHc-CCCeEEeh
Q 007936 313 HLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQL-NKPVIVAS 390 (584)
Q Consensus 313 ~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~-gKPvivAT 390 (584)
.+++.++ ..+..+.+-+.-|.... +|++++++-.|.|+-+ .+.. .....+...|.++ ++|++.++
T Consensus 85 ~a~~~l~--~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a---------~D~~-~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 85 ALKENLL--EINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEA---------FDNA-ETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHH--HHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEEC---------CCCH-HHHHHHHHHHHHhCCCCEEEee
Confidence 4445552 33555666555555444 5788888878887765 2233 3456788999999 99999874
No 483
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=34.34 E-value=5.3e+02 Score=31.68 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=82.0
Q ss_pred hhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcC------------C--------CCceEEEeecCHHHHhcHHHHH
Q 007936 287 LDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSR------------D--------SDIAVIAKIESIDSLKNLEEII 346 (584)
Q Consensus 287 ~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~------------~--------~~i~IiAKIEt~~av~NldeIl 346 (584)
+-++.|.+.|.+.|++.=-.+-.-+.++.+.++..+. + ....++.--++.+|..||-.+.
T Consensus 23 elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~~~~lvLLAkN~~GY~NL~kL~ 102 (874)
T PRK09532 23 ALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRRKYHQVVLAKNTQGYKNLVKLT 102 (874)
T ss_pred HHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccccceeEEEecCHHHHHHHHHHH
Confidence 4467889999999999877776666666665542100 0 0012333336888999996654
Q ss_pred H-------------------------hCCEEEEeCCccc-------------------------------ccCCCC---C
Q 007936 347 L-------------------------ASDGAMVARGDLG-------------------------------AQIPLE---Q 367 (584)
Q Consensus 347 ~-------------------------~sDGImIaRGDLg-------------------------------~ei~~e---~ 367 (584)
. ..+|+++.-|-++ +|+... .
T Consensus 103 S~a~~~~~~~~~~~~~P~i~~e~L~~~~~gLi~lsg~~~g~~~~~l~~~~~~~a~~~~~~~~~~fg~~~YLEIq~~g~~~ 182 (874)
T PRK09532 103 TISHLQGVQGKGIFARPCINKELLEQYHEGLIVTSACLGGEIPQAILSGRPDAARKVAKWYKKLFGDDFYLEIQDHGSQE 182 (874)
T ss_pred hHHHHhcccccCccCCCcCCHHHHHhcCCCeEEEeCCccchHHHHHhCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCChH
Confidence 3 3578887544322 222111 1
Q ss_pred hHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHccc
Q 007936 368 VPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRA 418 (584)
Q Consensus 368 V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~ 418 (584)
=....+.+++.|++.|+|++.... +....|..++..|+..++..|.
T Consensus 183 e~~~n~~Li~lAkk~giplVATnD-----vhY~~~eD~~~hdvL~~i~~g~ 228 (874)
T PRK09532 183 DRIVNVEIVKIARELGIKIIATND-----SHFISCYDVEAHDALLCIQTGK 228 (874)
T ss_pred HHHHHHHHHHHHHHhCCCEEEccC-----CcccCHhHHHHHHHHHHHhCCC
Confidence 112346799999999999887543 3456788999999999998874
No 484
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=34.02 E-value=3.2e+02 Score=32.72 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=66.5
Q ss_pred CCCccCHhhh--------HHhHhcCCCEEEEcCC-------------CC------------HHHHHHHHHHHHhhcCCCC
Q 007936 280 TISPKDWLDI--------DFGITEGVDFIAISFV-------------KS------------AEVINHLKSYIAARSRDSD 326 (584)
Q Consensus 280 ~lt~kD~~dI--------~~al~~gvD~I~lSfV-------------~s------------aedV~~lr~~l~~~~~~~~ 326 (584)
.+|..|++.+ +.+.+.|+|+|=+..- +. ...+.++.+.++ +..+.+
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir-~~~~~~ 618 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVR-AVWPAE 618 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHH-HhcCCC
Confidence 3676666665 4667899999966433 11 233344444443 223556
Q ss_pred ceEEEeecCHHHHh---cHH---HHHHh-----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHH-cCCCeEEehhhhH
Q 007936 327 IAVIAKIESIDSLK---NLE---EIILA-----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQ-LNKPVIVASQLLE 394 (584)
Q Consensus 327 i~IiAKIEt~~av~---Nld---eIl~~-----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~-~gKPvivATqmLe 394 (584)
..|..||-..+-.+ .++ ++++. +|.|-|..|--..+.....-+..|....+..++ .++||+....
T Consensus 619 ~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~--- 695 (765)
T PRK08255 619 KPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGA--- 695 (765)
T ss_pred CeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCC---
Confidence 77888885322111 122 22222 588888655322111000001123333333333 4889887532
Q ss_pred hhhcCCCCChhhHHHHHHHHHcc-cceEeec
Q 007936 395 SMIEYPTPTRAEVADVSEAVRQR-ADALMLS 424 (584)
Q Consensus 395 SMi~~p~PTrAEv~Dv~nav~~G-~D~imLs 424 (584)
.-|.. +.-.++.+| +|+||+.
T Consensus 696 ------i~~~~---~a~~~l~~g~~D~v~~g 717 (765)
T PRK08255 696 ------ISEAD---HVNSIIAAGRADLCALA 717 (765)
T ss_pred ------CCCHH---HHHHHHHcCCcceeeEc
Confidence 22333 334455555 9999986
No 485
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=33.86 E-value=1.5e+02 Score=30.27 Aligned_cols=66 Identities=14% Similarity=0.268 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHhCCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEe
Q 007936 311 INHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVA 389 (584)
Q Consensus 311 V~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivA 389 (584)
++.+++.+ .+.+.++.|.+.-+... -+|++++++-.|-|+.+-. . +..+..+-+.|+++++|++.+
T Consensus 88 a~~a~~~l--~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D---------~-~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 88 VESARAAL--ARINPHIAIETINARLD-DDELAALIAGHDLVLDCTD---------N-VATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHH--HHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCC---------C-HHHHHHHHHHHHHhCCEEEEe
Confidence 34444555 23455666655444333 2578888888998887622 2 256778889999999999875
No 486
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=33.81 E-value=54 Score=34.72 Aligned_cols=67 Identities=25% Similarity=0.245 Sum_probs=35.2
Q ss_pred HhhhHHhHhcCCCEEEEcC------CCCHHHHHHHHHHHHhhcCCCCceEEEe--ecCHHHHhcHHHHHHh--CCEEEEe
Q 007936 286 WLDIDFGITEGVDFIAISF------VKSAEVINHLKSYIAARSRDSDIAVIAK--IESIDSLKNLEEIILA--SDGAMVA 355 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSf------V~saedV~~lr~~l~~~~~~~~i~IiAK--IEt~~av~NldeIl~~--sDGImIa 355 (584)
.+-++...+.|+++|.+-- -+...|...++++.+ .. .+.||+- |.|. +...++++. +||||||
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~--~~--~ipvi~NGdI~s~---~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKE--AL--PIPVIANGDIFSP---EDAERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHH--C---TSEEEEESS--SH---HHHHHHCCCH-SSEEEES
T ss_pred HHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhh--cc--cceeEEcCccCCH---HHHHHHHHhcCCcEEEEc
Confidence 4445666789999988743 122455555555442 22 2777774 2232 233334444 8999999
Q ss_pred CCcc
Q 007936 356 RGDL 359 (584)
Q Consensus 356 RGDL 359 (584)
||=|
T Consensus 214 Rgal 217 (309)
T PF01207_consen 214 RGAL 217 (309)
T ss_dssp HHHC
T ss_pred hhhh
Confidence 9866
No 487
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=33.78 E-value=1.3e+02 Score=31.48 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=45.8
Q ss_pred CccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCCceEEEeecCHHH--HhcHHHHHHh-CCEEEE
Q 007936 282 SPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDS--LKNLEEIILA-SDGAMV 354 (584)
Q Consensus 282 t~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~a--v~NldeIl~~-sDGImI 354 (584)
+-...+++..|.+.|+|||.+..+ ++++++++.+.+. ..+++.| .-| .+|+.++++. +|+|-+
T Consensus 184 ev~t~eea~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~-----~~ipi~A----sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 184 EVESLEEAEEAAEAGADIIMLDNM-KPEEIKEAVQLLK-----GRVLLEA----SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred EeCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhc-----CCCcEEE----ECCCCHHHHHHHHHcCCCEEEe
Confidence 345678888999999999999886 4578888877662 1244443 233 4688888888 899988
No 488
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=33.50 E-value=79 Score=32.18 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=0.0
Q ss_pred ccCHhhhHHhHhcCCCEEEEcCCCC--HHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeC
Q 007936 283 PKDWLDIDFGITEGVDFIAISFVKS--AEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVAR 356 (584)
Q Consensus 283 ~kD~~dI~~al~~gvD~I~lSfV~s--aedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaR 356 (584)
+...+-.+...+.|+|+|.++--.. ..|...+++.- .++.||+ --++.+.++..+. +|+|||||
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~------~~ipVIg----nGgI~s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS------TELFIIG----NNSVTTIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc------CCCEEEE----ECCcCCHHHHHHHHHcCCCEEEEcC
Q ss_pred C
Q 007936 357 G 357 (584)
Q Consensus 357 G 357 (584)
+
T Consensus 222 ~ 222 (233)
T cd02911 222 A 222 (233)
T ss_pred C
No 489
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=33.47 E-value=1.4e+02 Score=28.67 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEE
Q 007936 120 FEQLEALAVGGMNVARINMCHGTREWHRRVIERVRRLNEEKGFAVAI 166 (584)
Q Consensus 120 ~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~e~~~~i~I 166 (584)
.+.+++++++|++.+.+..-+.+..+..+.++.++...+.++.++-|
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i 62 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIV 62 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 56799999999999999988888888888999999888777654433
No 490
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=33.44 E-value=96 Score=31.74 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=40.8
Q ss_pred HHHhcHHHHHHh-CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHH
Q 007936 337 DSLKNLEEIILA-SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR 415 (584)
Q Consensus 337 ~av~NldeIl~~-sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~ 415 (584)
...+.++.+++. .|+|||| |=+++. ..--...++.+++...||++- |.. .+.+.
T Consensus 15 ~~~~~~~~~~~~gtdai~vG-GS~~vt------~~~~~~~v~~ik~~~lPvilf------------p~~------~~~i~ 69 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIG-GSQGVT------YEKTDTLIEALRRYGLPIILF------------PSN------PTNVS 69 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEc-CCCccc------HHHHHHHHHHHhccCCCEEEe------------CCC------ccccC
Confidence 345567777766 7999998 332222 123455677778889999973 432 23445
Q ss_pred cccceEeec
Q 007936 416 QRADALMLS 424 (584)
Q Consensus 416 ~G~D~imLs 424 (584)
.|+|++++-
T Consensus 70 ~~aDa~l~~ 78 (223)
T TIGR01768 70 RDADALFFP 78 (223)
T ss_pred cCCCEEEEE
Confidence 789998763
No 491
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.36 E-value=37 Score=35.41 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=30.9
Q ss_pred hcCCcEEEEccCCchHHHHHhcc----CCCCcEEEEcCc
Q 007936 487 NLEVDALFVYTKTGHMASLLSRC----RPDCPIFAFTST 521 (584)
Q Consensus 487 ~l~a~aIvv~T~sG~tA~~lSr~----RP~~PIiavT~~ 521 (584)
+..+|.++|-|.+|+||-.+|.- .|.++.+.+||=
T Consensus 134 ~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itPI 172 (259)
T PRK00561 134 KYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIEL 172 (259)
T ss_pred EEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEee
Confidence 56899999999999999999975 578999999994
No 492
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=33.29 E-value=2.4e+02 Score=30.99 Aligned_cols=91 Identities=16% Similarity=0.291 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh----CCEEEEeCCcccccCCCCChHHHHHHHHHHHHHc
Q 007936 307 SAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA----SDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQL 382 (584)
Q Consensus 307 saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~----sDGImIaRGDLg~ei~~e~V~~~Qk~II~~c~~~ 382 (584)
+-+|+..+|+.- +.+||. .+|.+.++...+ +|||.|+-..=. .+...+.....+.+.....
T Consensus 212 tW~di~wlr~~~-------~~Piiv-----KgV~~~~dA~~a~~~Gvd~I~VsnhGGr---qld~~~~t~~~L~ei~~av 276 (367)
T PLN02493 212 SWKDVQWLQTIT-------KLPILV-----KGVLTGEDARIAIQAGAAGIIVSNHGAR---QLDYVPATISALEEVVKAT 276 (367)
T ss_pred CHHHHHHHHhcc-------CCCEEe-----ecCCCHHHHHHHHHcCCCEEEECCCCCC---CCCCchhHHHHHHHHHHHh
Q ss_pred C--CCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeec
Q 007936 383 N--KPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLS 424 (584)
Q Consensus 383 g--KPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs 424 (584)
+ .|||+..-+= .-.||..|+..|+|++++.
T Consensus 277 ~~~~~vi~dGGIr------------~G~Dv~KALALGA~aV~iG 308 (367)
T PLN02493 277 QGRIPVFLDGGVR------------RGTDVFKALALGASGIFIG 308 (367)
T ss_pred CCCCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
No 493
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=33.23 E-value=2.1e+02 Score=28.66 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=42.3
Q ss_pred HhhhHHhHhcCCCEEEEcCC---CCHHHHHHHHHHHHhhcCCCCceEEEeecCHHHH--hcHHHHHHh-CCEEEEeCCcc
Q 007936 286 WLDIDFGITEGVDFIAISFV---KSAEVINHLKSYIAARSRDSDIAVIAKIESIDSL--KNLEEIILA-SDGAMVARGDL 359 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV---~saedV~~lr~~l~~~~~~~~i~IiAKIEt~~av--~NldeIl~~-sDGImIaRGDL 359 (584)
..++..+.+.|+|||.+ |= -..+.+++++..+ ..+++++|- -|+ +|+.+.++. +|++-++.+=.
T Consensus 114 ~~E~~~A~~~Gad~vk~-Fpa~~~G~~~l~~l~~~~-----~~~ipvvai----GGI~~~n~~~~~~aGa~~vav~s~l~ 183 (206)
T PRK09140 114 PTEAFAALRAGAQALKL-FPASQLGPAGIKALRAVL-----PPDVPVFAV----GGVTPENLAPYLAAGAAGFGLGSALY 183 (206)
T ss_pred HHHHHHHHHcCCCEEEE-CCCCCCCHHHHHHHHhhc-----CCCCeEEEE----CCCCHHHHHHHHHCCCeEEEEehHhc
Confidence 45678889999999987 22 2355555555544 123666552 233 789999988 89998875433
No 494
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=33.04 E-value=5.4e+02 Score=27.29 Aligned_cols=156 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred HhhhHHhHhcCCCEEEEcCCCCHH--HHHHHHHHHHhhcCCCCceEEEeecCHHHHhcHHHHHHh-CCEEEEeCCccccc
Q 007936 286 WLDIDFGITEGVDFIAISFVKSAE--VINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILA-SDGAMVARGDLGAQ 362 (584)
Q Consensus 286 ~~dI~~al~~gvD~I~lSfV~sae--dV~~lr~~l~~~~~~~~i~IiAKIEt~~av~NldeIl~~-sDGImIaRGDLg~e 362 (584)
+.-|+.|-+.+...|+.---...+ ....+..+++..-.+..++|...+..-..++.+.+-++. .+-||+. |-+
T Consensus 32 ~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~ 107 (286)
T PRK12738 32 QAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMID----GSH 107 (286)
T ss_pred HHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeec----CCC
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCe--------EEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCC--
Q 007936 363 IPLEQVPSAQQKIVQLCRQLNKPV--------IVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQF-- 432 (584)
Q Consensus 363 i~~e~V~~~Qk~II~~c~~~gKPv--------ivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~y-- 432 (584)
+|+|+=...-+++++.|+.+|..| ..-..+-..-.....-+..|+.+....- |+|++-.+-=|+-|.|
T Consensus 108 lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~T--gvD~LAvaiGt~HG~Y~~ 185 (286)
T PRK12738 108 FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELT--GVDSLAVAIGTAHGLYSK 185 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHh--CCCEEEeccCcccCCCCC
Q ss_pred -hHHHHHHHHHHHHHH
Q 007936 433 -PDKALTVLRSVSLRI 447 (584)
Q Consensus 433 -PveaV~~m~~I~~~a 447 (584)
|.--...|.+|....
T Consensus 186 ~p~Ldfd~l~~I~~~~ 201 (286)
T PRK12738 186 TPKIDFQRLAEIREVV 201 (286)
T ss_pred CCcCCHHHHHHHHHHh
No 495
>PRK15108 biotin synthase; Provisional
Probab=32.99 E-value=1.1e+02 Score=33.11 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=25.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhcCCEEEEeC
Q 007936 107 TKLVCTIGPATCGFEQLEALAVGGMNVARINM 138 (584)
Q Consensus 107 tKIi~TiGPa~~~~e~l~~li~~Gm~v~RiN~ 138 (584)
..+++|+|+- +.|.+++|.++|++.+-+|+
T Consensus 125 i~v~~s~G~l--s~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 125 LETCMTLGTL--SESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred CEEEEeCCcC--CHHHHHHHHHcCCCEEeecc
Confidence 4678999974 49999999999999777665
No 496
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=32.84 E-value=1.7e+02 Score=29.96 Aligned_cols=53 Identities=28% Similarity=0.305 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCEEEEeCCCC--------CHHHHHHHHHHHHHHHHHhCCceEEEeecCCCe
Q 007936 120 FEQLEALAVGGMNVARINMCHG--------TREWHRRVIERVRRLNEEKGFAVAIMMDTEGSE 174 (584)
Q Consensus 120 ~e~l~~li~~Gm~v~RiN~sHg--------~~e~~~~~i~~ir~~~~e~~~~i~I~lDl~Gpk 174 (584)
.+..++|+++|+++.=+|+.-. ..+++.++...++.+.++.+ +.|.+|+.=|+
T Consensus 27 ~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~--~piSIDT~~~~ 87 (258)
T cd00423 27 LEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPD--VPISVDTFNAE 87 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCC--CeEEEeCCcHH
Confidence 3456889999999999998655 46777888888888876654 55788887554
No 497
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.84 E-value=38 Score=35.86 Aligned_cols=35 Identities=34% Similarity=0.340 Sum_probs=30.4
Q ss_pred hcCCcEEEEccCCchHHHHHhcc----CCCCcEEEEcCc
Q 007936 487 NLEVDALFVYTKTGHMASLLSRC----RPDCPIFAFTST 521 (584)
Q Consensus 487 ~l~a~aIvv~T~sG~tA~~lSr~----RP~~PIiavT~~ 521 (584)
+..+|.++|-|.+|+||..+|.- .|.++.+.+||=
T Consensus 173 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI 211 (292)
T PRK01911 173 SYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITPI 211 (292)
T ss_pred EEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEEEec
Confidence 46899999999999999999975 567889999873
No 498
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=32.82 E-value=2.6e+02 Score=29.14 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=61.3
Q ss_pred CCCccCHhhhHHhHhcCCCEEEEcCCCCHHHHHHHHHHHHhh-----cCCCCceEEEeecCHHHHhcHHHHHHhCCEEEE
Q 007936 280 TISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAAR-----SRDSDIAVIAKIESIDSLKNLEEIILASDGAMV 354 (584)
Q Consensus 280 ~lt~kD~~dI~~al~~gvD~I~lSfV~saedV~~lr~~l~~~-----~~~~~i~IiAKIEt~~av~NldeIl~~sDGImI 354 (584)
.+.+...+-+..+.+.|+..+.+.-+ +.++...+.++.+.. ..|-++.- .+-++.+.++.|.+.+.. |-=.+
T Consensus 14 ~~~~d~~~vi~~a~~~gv~~~~~~g~-~~~~~~~~~~la~~y~~v~~~~G~HP~~-~~~~~~~~~~~l~~~~~~-~~~vv 90 (256)
T COG0084 14 EFDEDRDEVIARAREAGVKKMVVVGT-DLEDFKRALELAEKYPNVYAAVGVHPLD-ADEHSEEDLEELEQLAEH-HPKVV 90 (256)
T ss_pred hhcCCHHHHHHHHHHcCCcEEEEeec-CHHHHHHHHHHHHhCCCeEEEEeeCCCc-cccccHHHHHHHHHHHhc-CCCeE
Confidence 33333344456788899998877764 455666666666421 11222222 222344444445555543 33444
Q ss_pred eCCcccccCCCCCh--HHHHH----HHHHHHHHcCCCeEEeh
Q 007936 355 ARGDLGAQIPLEQV--PSAQQ----KIVQLCRQLNKPVIVAS 390 (584)
Q Consensus 355 aRGDLg~ei~~e~V--~~~Qk----~II~~c~~~gKPvivAT 390 (584)
|=|+-|.+.-+..- ...|+ +-++.|++.++|+++.+
T Consensus 91 aIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~ 132 (256)
T COG0084 91 AIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHT 132 (256)
T ss_pred EEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 44666666654333 33465 45788999999999985
No 499
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=32.77 E-value=4.8e+02 Score=27.33 Aligned_cols=117 Identities=16% Similarity=0.188 Sum_probs=67.9
Q ss_pred HHHHHHHcCCCeEEehhhhHhhhcCCCCChhhHHHHHHHHHcccceEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhhh
Q 007936 375 IVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRSVSLRIEKWWREE 454 (584)
Q Consensus 375 II~~c~~~gKPvivATqmLeSMi~~p~PTrAEv~Dv~nav~~G~D~imLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 454 (584)
+...|+..|.|+.+- .|..+....+...-..|++.+...+ ..-++.....+++++- ++
T Consensus 85 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~l~~~GA~Vi~~~~------~~~~~~~~a~~~~~~~--~~--- 142 (324)
T cd01563 85 LAAYAARAGIKCVVF-----------LPAGKALGKLAQALAYGATVLAVEG------NFDDALRLVRELAEEN--WI--- 142 (324)
T ss_pred HHHHHHHcCCceEEE-----------EeCCCCHHHHHHHHHcCCEEEEECC------cHHHHHHHHHHHHHhc--Ce---
Confidence 456899999998875 2333333334444457988776532 2345555555544331 11
Q ss_pred hhhhcccCCCCCCCCCcChHHHHHHHHHHHHhhcC---CcEEEEccCCchHHHHHhcc----C------CCCcEEEEcCc
Q 007936 455 KRHEAMELPDVGSSFAESISEEICNSAAKMANNLE---VDALFVYTKTGHMASLLSRC----R------PDCPIFAFTST 521 (584)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~---a~aIvv~T~sG~tA~~lSr~----R------P~~PIiavT~~ 521 (584)
...+... +..+ +....-+.|+..+++ .++||+.+-+|.++.-++++ + |...|+++.+.
T Consensus 143 ------~~~~~~n--~~~~-~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~ 213 (324)
T cd01563 143 ------YLSNSLN--PYRL-EGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAE 213 (324)
T ss_pred ------eccCCCC--ccee-cchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecC
Confidence 1111111 1111 122334566666653 68999999999999887764 3 57789999875
Q ss_pred h
Q 007936 522 T 522 (584)
Q Consensus 522 ~ 522 (584)
.
T Consensus 214 ~ 214 (324)
T cd01563 214 G 214 (324)
T ss_pred C
Confidence 3
No 500
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=32.71 E-value=2.5e+02 Score=30.97 Aligned_cols=88 Identities=11% Similarity=0.134 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHhhcCCcEEEEccCCchHHHHHhcc--CCCCcEEEEcCchhhhc--ccccccccEEEEecCCCCHHH
Q 007936 472 SISEEICNSAAKMANNLEVDALFVYTKTGHMASLLSRC--RPDCPIFAFTSTTSVRR--RLNLRWGLIPFRLSFSDDMES 547 (584)
Q Consensus 472 ~~~~~ia~sav~~A~~l~a~aIvv~T~sG~tA~~lSr~--RP~~PIiavT~~~~~aR--~l~l~~GV~P~~~~~~~d~~~ 547 (584)
+..+.-+..++..+.+.+.+.|++. .+|++++-+|.+ +-..|.+.++|.....+ ......|+.-+.++ .+.++
T Consensus 99 SFKdRga~~~i~~a~~~g~~~Vv~a-SsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~--g~~d~ 175 (398)
T TIGR03844 99 SFKELEALPTMQRLKERGGKTLVVA-SAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVD--GDYTD 175 (398)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECC--CCHHH
Confidence 4456667777777877787765555 599999888876 45578888888652221 11256677666554 35566
Q ss_pred HHHHHHHHHHHcCCC
Q 007936 548 NLNRTFSLLKARGMI 562 (584)
Q Consensus 548 ~i~~~~~~~k~~g~i 562 (584)
..+.+.+++++.|+.
T Consensus 176 a~~~a~~~a~~~g~~ 190 (398)
T TIGR03844 176 AIALADRIATLPGFV 190 (398)
T ss_pred HHHHHHHHHHhCCcc
Confidence 667777777776653
Done!