BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007937
         (584 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
           Fut8
          Length = 526

 Score = 38.5 bits (88), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 122/350 (34%), Gaps = 119/350 (34%)

Query: 208 DEENYPLTRKVQRDIWVHQHPPNCWDPNVRFLVADWERLPGFGIGAQIAGMCGLLAIAIN 267
           ++E   LT  VQR I   Q+P +C     + LV +  +  G G G Q+  +     IA  
Sbjct: 119 EKEAKDLTELVQRRITYLQNPKDC--SKAKKLVCNINK--GCGYGCQLHHVVYCFMIAYG 174

Query: 268 EKRVLVTNYYNRADHDGCKGSSRSSWSCYFLPETSQECRDR--------AFELMD-NKEA 318
            +R L+    N     G        W   F P  S+ C DR        + E+ D N + 
Sbjct: 175 TQRTLILESQNWRYATG-------GWETVFRP-VSETCTDRSGISTGHWSGEVKDKNVQV 226

Query: 319 LEKGIITT---KDNY---SSKQIWAGRAPRVWGDPWSYLQPTTEINGTLIAYHRKMDRRW 372
           +E  I+ +   +  Y   +  +  A R  RV GDP                        W
Sbjct: 227 VELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAV----------------------W 264

Query: 373 WRAQAVRYLMRFLTEYTCGLLNVARHAAFGKEAAKMVLTGLPREWPNVEVANNSGSDIED 432
           W +Q V+YL+R                              P+ W   E+          
Sbjct: 265 WVSQFVKYLIR------------------------------PQPWLEKEIEE-------- 286

Query: 433 FVWSSHRPWIPRPMLSMHVRMGDK-ACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTEM 491
              ++ +     P++ +HVR  DK   E      E+YM+    + +HF       L+  M
Sbjct: 287 ---ATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMV---HVEEHFQ-----LLARRM 335

Query: 492 QEVVDKSKLYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFL 541
           Q  VDK ++Y                  +A  + SL +E  T YP   F+
Sbjct: 336 Q--VDKKRVY------------------LATDDPSLLKEAKTKYPNYEFI 365


>pdb|1ZRL|A Chain A, Crystal Structure Of Eba-175 Region Ii (Rii)
 pdb|1ZRO|A Chain A, Crystal Structure Of Eba-175 Region Ii (Rii) Crystallized
           In The Presence Of (Alpha)2,3-Sialyllactose
 pdb|1ZRO|B Chain B, Crystal Structure Of Eba-175 Region Ii (Rii) Crystallized
           In The Presence Of (Alpha)2,3-Sialyllactose
          Length = 602

 Score = 29.3 bits (64), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 261 LLAIAINEKRVLVTNYYNRADHDGCK 286
           +LAIAI E R+L   Y N+ D + CK
Sbjct: 372 ILAIAIYESRILKRKYKNKDDKEVCK 397


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,128,806
Number of Sequences: 62578
Number of extensions: 695091
Number of successful extensions: 1298
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1297
Number of HSP's gapped (non-prelim): 3
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)