Query 007937
Match_columns 584
No_of_seqs 167 out of 211
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 17:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3705 Glycoprotein 6-alpha-L 100.0 1.9E-81 4.2E-86 650.8 4.9 313 195-584 177-504 (580)
2 PF05830 NodZ: Nodulation prot 99.6 5.9E-16 1.3E-20 159.5 11.2 136 425-566 147-296 (321)
3 PF10250 O-FucT: GDP-fucose pr 99.0 1.1E-09 2.5E-14 113.2 8.9 37 534-570 308-344 (351)
4 PF01531 Glyco_transf_11: Glyc 98.3 2.1E-06 4.6E-11 88.8 9.9 98 443-566 162-267 (298)
5 PF03254 XG_FTase: Xyloglucan 97.7 0.00065 1.4E-08 75.2 15.3 113 445-566 301-437 (476)
6 KOG3849 GDP-fucose protein O-f 97.0 0.0021 4.6E-08 66.8 7.5 111 442-572 228-371 (386)
7 PF02348 CTP_transf_3: Cytidyl 49.0 89 0.0019 30.1 8.3 54 449-502 4-60 (217)
8 KOG0673 Thymidylate synthase [ 44.2 79 0.0017 33.2 7.2 105 442-554 110-229 (293)
9 PF15018 InaF-motif: TRP-inter 42.5 22 0.00047 27.2 2.2 22 29-50 9-30 (38)
10 PF01075 Glyco_transf_9: Glyco 40.7 1E+02 0.0022 30.3 7.4 92 442-564 103-201 (247)
11 COG0859 RfaF ADP-heptose:LPS h 39.9 1.5E+02 0.0032 31.4 8.8 94 444-566 175-271 (334)
12 COG1212 KdsB CMP-2-keto-3-deox 38.8 83 0.0018 32.9 6.4 48 480-528 41-88 (247)
13 COG1922 WecG Teichoic acid bio 34.1 1.9E+02 0.0041 30.5 8.2 74 467-555 92-171 (253)
14 PF03414 Glyco_transf_6: Glyco 33.8 59 0.0013 35.4 4.7 97 443-558 97-206 (337)
15 PF03808 Glyco_tran_WecB: Glyc 32.9 1.8E+02 0.0038 28.1 7.5 73 482-569 48-126 (172)
16 cd06533 Glyco_transf_WecG_TagA 31.3 1.8E+02 0.0039 28.1 7.2 72 482-568 46-123 (171)
17 COG1083 NeuA CMP-N-acetylneura 31.1 1.6E+02 0.0034 30.6 7.0 76 480-567 42-118 (228)
18 TIGR02195 heptsyl_trn_II lipop 30.9 2.9E+02 0.0063 28.7 9.2 96 443-565 173-270 (334)
19 TIGR02193 heptsyl_trn_I lipopo 29.5 3.4E+02 0.0074 27.9 9.4 92 443-564 178-272 (319)
20 cd02515 Glyco_transf_6 Glycosy 27.3 1.3E+02 0.0029 32.0 5.8 88 463-558 41-141 (271)
21 TIGR02201 heptsyl_trn_III lipo 25.2 4.7E+02 0.01 27.3 9.6 96 443-565 180-279 (344)
22 KOG1123 RNA polymerase II tran 24.1 37 0.0008 39.2 1.2 44 446-489 535-597 (776)
23 TIGR00696 wecB_tagA_cpsF bacte 22.5 3.2E+02 0.007 26.8 7.3 83 470-568 35-124 (177)
24 PRK10916 ADP-heptose:LPS hepto 20.9 4.9E+02 0.011 27.3 8.8 100 443-565 179-280 (348)
25 PF10206 WRW: Mitochondrial F1 20.8 1.2E+02 0.0027 27.8 3.7 64 195-270 34-97 (104)
26 TIGR02898 spore_YhcN_YlaJ spor 20.5 1.2E+02 0.0027 29.6 3.8 55 443-502 79-133 (158)
No 1
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-81 Score=650.76 Aligned_cols=313 Identities=21% Similarity=0.329 Sum_probs=271.8
Q ss_pred CCCCCCCCcccCCccCChhhHHHHHHHHHhhcCCCCCCCCCCceEEEeeccCCCcchhHHHHHHHHHHHHHHhcCcEEEE
Q 007937 195 ISEGVYPPWITGSDEENYPLTRKVQRDIWVHQHPPNCWDPNVRFLVADWERLPGFGIGAQIAGMCGLLAIAINEKRVLVT 274 (584)
Q Consensus 195 ~~~~~~p~wi~g~dee~~pLT~~vQr~I~~~QNP~DCs~A~~KfLvc~~~~~cGfGcg~H~v~~C~~L~~A~~tgRtLIl 274 (584)
...+|+..|+ .+|...||++|||||+++|||+||++| |+|||+++++|||||++||++||+| +||+|.||||+
T Consensus 177 ~q~dG~e~wR---~Kea~dlt~lvqrri~~LQNPkdCs~A--kkLVCnlnKgCGyGCQLHHVvYCfi--~AyaTqRtliL 249 (580)
T KOG3705|consen 177 EQLDGSEEWR---FKEATDLTQLVQRRIEKLQNPKDCSEA--KKLVCNLNKGCGYGCQLHHVVYCFI--TAYATQRTLIL 249 (580)
T ss_pred HhccCcHHHH---HhHHhHHHHHHHHHHHHhcChHhhHHH--hhheeeccCCcccccceeeeeEeee--eeeecceEEEE
Confidence 3568999999 489999999999999999999999999 9999999999999999999999999 99999999999
Q ss_pred eCCCCcCCCCCCCCCCCCCccccccCCcccccchhhc----cccchhhhccCcEEe--ccCCCCcccccCCCCCCCCCCC
Q 007937 275 NYYNRADHDGCKGSSRSSWSCYFLPETSQECRDRAFE----LMDNKEALEKGIITT--KDNYSSKQIWAGRAPRVWGDPW 348 (584)
Q Consensus 275 d~~~~~~h~Gc~g~~~~~WscyF~P~sS~~C~~~a~e----~~~~~~~~~~~Vv~~--~~~~~~~~~f~g~~P~p~~~P~ 348 (584)
++.+|.|+.| ||+.+|.|. |+.|.++++. |...... ..+||.+ .|++.++|+|+ |.++|+
T Consensus 250 ks~gWrY~~g-------GWe~VF~pv-S~~c~D~~~~nT~~wpg~~~~-n~qVv~LpIvDSL~prPpyL-----PlAVPE 315 (580)
T KOG3705|consen 250 KSDGWRYSSG-------GWESVFKPV-SKCCFDEAVGNTEAWPGAEPS-NAQVVSLPIVDSLIPRPPYL-----PLAVPE 315 (580)
T ss_pred ecCCceecCC-------Chhhhhhhh-hhcccccccccccCCCCCCCC-CceEEEeecccccCCCCCCc-----cccCcH
Confidence 9999988765 799999985 8999998663 3322111 2456666 78999999999 999999
Q ss_pred cccccccccccchhhhcccchhhHHHHHHHHHhhcCChHHHhhHHHHHhhhhhhHHHHHHHHhCCCCCCccccccCCCcc
Q 007937 349 SYLQPTTEINGTLIAYHRKMDRRWWRAQAVRYLMRFLTEYTCGLLNVARHAAFGKEAAKMVLTGLPREWPNVEVANNSGS 428 (584)
Q Consensus 349 ~~~~~l~~lhG~p~~~~~~~~~~WW~gQ~~~YLmRp~~e~l~~Lln~~R~~afG~~aa~~v~~~l~~~w~~~~~~~~~~~ 428 (584)
+++++++++||+| .+||+||+++||||||+.+- +.|+++ .+
T Consensus 316 dLa~rL~rlHgdP--------~vwwVgqFikYL~Rpqp~t~-~~l~~a------------------------------~k 356 (580)
T KOG3705|consen 316 DLAERLTRLHGDP--------PVWWVGQFIKYLMRPQPATQ-EKLDKA------------------------------LK 356 (580)
T ss_pred HHHHHHHHhcCCC--------ceeeHHHHHHHHhCCChhhH-HHHHHH------------------------------HH
Confidence 9999999999999 99999999999999999443 333321 12
Q ss_pred chhhhhhcCCCCCCCCCeEEEEEcCCccc-ccccccCHHHHHHHHHHHHH-----hCCCCcEEEEeCCchHHHHHhh-cC
Q 007937 429 DIEDFVWSSHRPWIPRPMLSMHVRMGDKA-CEMKVVEFEKYMLLADRIRK-----HFPHLNSIWLSTEMQEVVDKSK-LY 501 (584)
Q Consensus 429 ~i~~~V~s~~kp~~p~PiVGVHVRrGDK~-~Ea~~~~~eeYM~~Ve~~~~-----~~p~~rrIFLATDDp~Vi~Eak-kY 501 (584)
.|+ +.+||||||||||||+ +||++|+++|||.+||.+++ ..|..||||||||||+|++|+| +|
T Consensus 357 ~lg----------~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~f~~le~rg~~~~rRiflAsDDp~vv~EAk~kY 426 (580)
T KOG3705|consen 357 SLG----------LDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVEIWFKVLEKRGKPLERRIFLASDDPTVVPEAKNKY 426 (580)
T ss_pred hCC----------CCCceeeEEEEecccccchhhhhhHHHHHHHHHHHHHHHHHhCCchhheEEEecCCchhchHhhccC
Confidence 333 7889999999999998 69999999999999998875 3567899999999999999999 99
Q ss_pred CCceEEecc-cccccCCchHHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhcCC-Cccccceecc
Q 007937 502 PHWNFYFTN-VTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNTGG-KVMSGYLSVN 579 (584)
Q Consensus 502 p~y~fy~t~-I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRqt~g-ka~a~F~Svd 579 (584)
|+|.|+.+. |.+. +....++++++++++++||++||.+||+||||||||||++||+|||.| |+.+.|+|+|
T Consensus 427 PnYe~igd~eia~~-------A~l~nRYTd~sL~GvIlDIh~LS~~d~LVCTFSSQVCRvaYEimQt~~pDa~~~FhSLD 499 (580)
T KOG3705|consen 427 PNYEVIGDTEIAKT-------AQLNNRYTDASLMGVILDIHILSKVDYLVCTFSSQVCRVAYEIMQTSGPDAGSKFHSLD 499 (580)
T ss_pred CCcEEeccHHHHHH-------hhccccchhhhhhheeeeeeeecccceEEEechHHHHHHHHHHHhccCCCccccccccc
Confidence 999996543 3322 223455588999999999999999999999999999999999999998 9999999999
Q ss_pred CCCCC
Q 007937 580 KDRFW 584 (584)
Q Consensus 580 ~~~~~ 584 (584)
||||+
T Consensus 500 DIYYf 504 (580)
T KOG3705|consen 500 DIYYF 504 (580)
T ss_pred ceeee
Confidence 99984
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=99.65 E-value=5.9e-16 Score=159.50 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=80.8
Q ss_pred CCccchhhhhhcCCCCC-CCCCeEEEEEcCC---cccccccccCHH-HHHHHHHHHHH----hCCC-CcEEEEeCCchHH
Q 007937 425 NSGSDIEDFVWSSHRPW-IPRPMLSMHVRMG---DKACEMKVVEFE-KYMLLADRIRK----HFPH-LNSIWLSTEMQEV 494 (584)
Q Consensus 425 ~~~~~i~~~V~s~~kp~-~p~PiVGVHVRrG---DK~~Ea~~~~~e-eYM~~Ve~~~~----~~p~-~rrIFLATDDp~V 494 (584)
+.+++|++.|+..+... .++++||||||+| |+..++.++... .+|++|....+ +.+. ..+||||||+++|
T Consensus 147 kpR~eIqarID~iy~ehf~g~~~IGVHVRhGngeD~~~h~~~~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLATDSaeV 226 (321)
T PF05830_consen 147 KPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGEDIMDHAPYWADEERALRQVCTAIDKAKALAPPKPVRIFLATDSAEV 226 (321)
T ss_dssp -B-HHHHHHHHHHHHHHTTTSEEEEEEE---------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEEES-HHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCcchhccCccccCchHHHHHHHHHHHHHHhccCCCCeeEEEecCcHHH
Confidence 45678888888766644 6788999999999 666677665555 49988886543 2333 4589999999999
Q ss_pred HHHhh-cCCCceEEeccccccc--CCchHHHHhhhcCCcccchhHHHHHHHHhcCCceEE-cCCCcHHHHHHHHHh
Q 007937 495 VDKSK-LYPHWNFYFTNVTRQV--GNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIG-ALGSTWCFLIDGMRN 566 (584)
Q Consensus 495 i~Eak-kYp~y~fy~t~I~r~~--g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVG-TfSSnv~RLi~ELRq 566 (584)
+++++ ++|+.... ++-.+.. |..... .. ..++..++|+|++|||+||++|. |.+|..||++--++-
T Consensus 227 id~fr~~FPdiiti-~k~F~~~~~g~Lhs~----~~-g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~asl~~p 296 (321)
T PF05830_consen 227 IDQFRKKFPDIITI-PKQFPASQAGPLHSA----AV-GIEGGESALIDMYLLSRCDYLIRFPPTSAFSRYASLFVP 296 (321)
T ss_dssp HHHHHHHSTTEE-----------------H----HH-HHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHHHH-S
T ss_pred HHHHHHHCCCeEEc-ccccCCCCCCcCccc----cc-ccchHHHHHHHHHHHHhCCeEEEcCCCchhhhHHHHhcc
Confidence 99999 89984432 2211121 222111 11 23456789999999999999995 999999999987763
No 3
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=98.99 E-value=1.1e-09 Score=113.21 Aligned_cols=37 Identities=35% Similarity=0.493 Sum_probs=31.5
Q ss_pred hhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhcCCC
Q 007937 534 NYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNTGGK 570 (584)
Q Consensus 534 ~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRqt~gk 570 (584)
...++|.++++++|+||||..|+|+..|.+.|...|+
T Consensus 308 ~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~ 344 (351)
T PF10250_consen 308 QLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGK 344 (351)
T ss_dssp --HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSS
T ss_pred chhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCC
Confidence 3568999999999999999999999999999999884
No 4
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=98.33 E-value=2.1e-06 Score=88.79 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=65.4
Q ss_pred CCCeEEEEEcCCccccccc-----ccCHHHHHHHHH-HHHHhCCCCcEEEEeCCchHHHHHhh-c-CCCceEEecccccc
Q 007937 443 PRPMLSMHVRMGDKACEMK-----VVEFEKYMLLAD-RIRKHFPHLNSIWLSTEMQEVVDKSK-L-YPHWNFYFTNVTRQ 514 (584)
Q Consensus 443 p~PiVGVHVRrGDK~~Ea~-----~~~~eeYM~~Ve-~~~~~~p~~rrIFLATDDp~Vi~Eak-k-Yp~y~fy~t~I~r~ 514 (584)
....|||||||||.+.... .....+|...|- .+..+.+ ...+||.+||++-.++-- . .+...| +
T Consensus 162 ~~~~V~VHIRRGDy~~~~~~~~~~~~~~~~Yy~~Ai~~i~~~~~-~~~f~ifSDD~~w~k~~l~~~~~~~~~--~----- 233 (298)
T PF01531_consen 162 NSNSVCVHIRRGDYVSNGNHNWKHGICDKDYYKKAIEYIREKVK-NPKFFIFSDDIEWCKENLKFSNGDVYF--S----- 233 (298)
T ss_pred CCCeEEEEEEchhccccccccccCCCCCHHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHhhcCCcEEE--E-----
Confidence 4578999999999875322 233446665554 4444443 446999999998776543 2 222222 1
Q ss_pred cCCchHHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 007937 515 VGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 566 (584)
Q Consensus 515 ~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRq 566 (584)
++ .....|+++++.||++|.| .|+.|--+.=|-.
T Consensus 234 -~~----------------~~~~~Dl~lms~C~~~Iis-nSTFswW~a~L~~ 267 (298)
T PF01531_consen 234 -GN----------------NSPYEDLYLMSQCKHFIIS-NSTFSWWAAYLSK 267 (298)
T ss_pred -CC----------------CCHHHHHHHHHhCCcEEEC-CChHHHHHHHHCC
Confidence 11 2357999999999999999 6888887777754
No 5
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=97.73 E-value=0.00065 Score=75.15 Aligned_cols=113 Identities=14% Similarity=0.211 Sum_probs=70.8
Q ss_pred CeEEEEEcCCcccccccccCHHHHHHHHHHHHHh---CC-----------------CCcEEEEeCCchHHHHHhh-cCCC
Q 007937 445 PMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKH---FP-----------------HLNSIWLSTEMQEVVDKSK-LYPH 503 (584)
Q Consensus 445 PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~---~p-----------------~~rrIFLATDDp~Vi~Eak-kYp~ 503 (584)
-.|||+||.-+...+ +++.+++.|-.=..+ .| ..+.|+|++.-+.--++++ .|-+
T Consensus 301 ~riGIQIRvf~~~~~----~~~~~~dqIl~C~~~e~LLP~v~~~~~~~~~~~~~~~~~kaVlVtSL~~~yye~lr~~Y~~ 376 (476)
T PF03254_consen 301 ERIGIQIRVFDPKPG----PFQHVLDQILSCTQQEKLLPEVVDTQEPAASSSSKSQKSKAVLVTSLYSEYYEKLRNMYWE 376 (476)
T ss_pred ceeEEEEEecCCCCC----cchhHHHHHHHHHhhcccCCCccccccccccccCCCCceEEEEEEeCCHHHHHHHHHHHhc
Confidence 369999999886433 446666666531110 11 1357999999999999999 6632
Q ss_pred ceEE-ec--ccccccCCchHHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 007937 504 WNFY-FT--NVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 566 (584)
Q Consensus 504 y~fy-~t--~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRq 566 (584)
..-. .. .|. .+++..+++. +...--..+++||+|||-||.+|-|--|+.|.++..|--
T Consensus 377 ~~t~tGe~V~V~----QpShe~~Q~~-~~~~h~~kAlaEmyLLS~sD~LVTS~~STFGYVAqgLgG 437 (476)
T PF03254_consen 377 HPTVTGEVVGVH----QPSHEEYQQF-GDNMHNQKALAEMYLLSLSDVLVTSGWSTFGYVAQGLGG 437 (476)
T ss_pred CCCcCCcEEEEE----CCCCcccccc-cccchHHHHHHHHHHHHhccceEecCCCCchhHHHhhcC
Confidence 1110 00 011 1222222221 111111457999999999999999999999999988753
No 6
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0021 Score=66.77 Aligned_cols=111 Identities=17% Similarity=0.354 Sum_probs=77.4
Q ss_pred CCCCeEEEEEcCCcc---ccccc-------c----------------------cCHHHHHHHHHHHHHhCCCCcEEEEeC
Q 007937 442 IPRPMLSMHVRMGDK---ACEMK-------V----------------------VEFEKYMLLADRIRKHFPHLNSIWLST 489 (584)
Q Consensus 442 ~p~PiVGVHVRrGDK---~~Ea~-------~----------------------~~~eeYM~~Ve~~~~~~p~~rrIFLAT 489 (584)
+++|+||||.|.|-- ++|+- + -+.++-++.+.+..+...+.+.|||||
T Consensus 228 L~rpfvgiHLRng~DWvraCehikd~~~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAs 307 (386)
T KOG3849|consen 228 LARPFVGIHLRNGADWVRACEHIKDTTNRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVAS 307 (386)
T ss_pred cCcceeEEEeecCchHHHHHHHhcccCCCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEec
Confidence 688999999999753 23431 1 112334444444444455688999999
Q ss_pred CchHHHHHhh-cCCCceEEecccccccCCchHHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhcC
Q 007937 490 EMQEVVDKSK-LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNTG 568 (584)
Q Consensus 490 DDp~Vi~Eak-kYp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRqt~ 568 (584)
|....|+|+. .-..|.+ ++.|+.. ...-+|+.||-.+|+|||.--|..+-++..=|...
T Consensus 308 Ds~hmi~Eln~aL~~~~i---~vh~l~p-----------------dd~y~dLaIlGqadhFiGNCvSsfsafvKRERD~~ 367 (386)
T KOG3849|consen 308 DSDHMIDELNEALKPYEI---EVHRLEP-----------------DDMYTDLAILGQADHFIGNCVSSFSAFVKRERDHA 367 (386)
T ss_pred cchhhhHHHHHhhcccce---eEEecCc-----------------ccchhhhhhhcccchhhhhhHHHHHHHHhhhhccc
Confidence 9999999998 3333444 2334321 12359999999999999999999999999888887
Q ss_pred CCcc
Q 007937 569 GKVM 572 (584)
Q Consensus 569 gka~ 572 (584)
|.-+
T Consensus 368 GrPS 371 (386)
T KOG3849|consen 368 GRPS 371 (386)
T ss_pred CCcc
Confidence 7543
No 7
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=49.01 E-value=89 Score=30.12 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=33.0
Q ss_pred EEEcCCcccccccc---cCHHHHHHHHHHHHHhCCCCcEEEEeCCchHHHHHhhcCC
Q 007937 449 MHVRMGDKACEMKV---VEFEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKLYP 502 (584)
Q Consensus 449 VHVRrGDK~~Ea~~---~~~eeYM~~Ve~~~~~~p~~rrIFLATDDp~Vi~EakkYp 502 (584)
|..|.|=|..-.+. +.=+-=+.++-+-..+-....+|+|||||..+.+.+++|.
T Consensus 4 IpAR~gS~rlp~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g 60 (217)
T PF02348_consen 4 IPARGGSKRLPGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEYG 60 (217)
T ss_dssp EEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHTT
T ss_pred EecCCCCCCCCcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHcC
Confidence 56677776543321 1111122333333345566778999999999999999887
No 8
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=44.18 E-value=79 Score=33.17 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=64.3
Q ss_pred CCCCeEEEEEcCCccc-c--cccc--cCHHHHHHHHHHHHHhCCCCcEEEEeCCchHHHHHhhcCCC---ceEEeccccc
Q 007937 442 IPRPMLSMHVRMGDKA-C--EMKV--VEFEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKLYPH---WNFYFTNVTR 513 (584)
Q Consensus 442 ~p~PiVGVHVRrGDK~-~--Ea~~--~~~eeYM~~Ve~~~~~~p~~rrIFLATDDp~Vi~EakkYp~---y~fy~t~I~r 513 (584)
.-.|+-|+|-|+=+-- . +..+ .+++.--+.+ .-.+.+|+-|||.++.=+|.=+.++..-|- .+||.++
T Consensus 110 DlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI-~~ik~NP~drRIimsAwNP~dl~~malpPCH~~~QFyV~~--- 185 (293)
T KOG0673|consen 110 DLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVI-NKIKNNPDDRRIIMSAWNPLDLGKMALPPCHTFCQFYVAN--- 185 (293)
T ss_pred CcccccceeeeecCccccccccccccccHHHHHHHH-HHHhcCCccceeeeeccCccccccccCCccceeeEEEecC---
Confidence 4469999999985432 2 3333 2333333322 334679999999999999988877765553 5677665
Q ss_pred ccCCchHHHHhhhcCCcccc-------hhHHHHHHHHhcCCceEEcCC
Q 007937 514 QVGNMTMAIYEASLGRETST-------NYPLVNFLMATDSDFFIGALG 554 (584)
Q Consensus 514 ~~g~~s~a~y~~~~g~~~sl-------~~iLvDl~LLseCDyfVGTfS 554 (584)
|..|-.-|+++ .+-++ -+.|+-..++--||+--|.|-
T Consensus 186 --GelScq~YQrS--~dmglGVPFnIASYsLLT~miAhv~gl~pgdfi 229 (293)
T KOG0673|consen 186 --GELSCQMYQRS--GDMGLGVPFNIASYSLLTCMIAHVCGLKPGDFI 229 (293)
T ss_pred --Ceeeehhhhhc--cccccCccchhHHHHHHHHHHHHHhCCCCCceE
Confidence 44555556553 22221 245666677777887555543
No 9
>PF15018 InaF-motif: TRP-interacting helix
Probab=42.51 E-value=22 Score=27.17 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=17.9
Q ss_pred hhhhhhhHHHHHHHHHHHhccc
Q 007937 29 CVVGFLCGVCLATLFLAALTSF 50 (584)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~ 50 (584)
=|+|-+||||++.+.|+.--.|
T Consensus 9 tV~~Yl~~VSl~Ai~LsiYY~f 30 (38)
T PF15018_consen 9 TVVAYLFSVSLAAIVLSIYYIF 30 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHhe
Confidence 3789999999999999865443
No 10
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=40.70 E-value=1e+02 Score=30.25 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=49.5
Q ss_pred CCCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeCCch----HHHHHhh-cCCC--ceEEecccccc
Q 007937 442 IPRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTEMQ----EVVDKSK-LYPH--WNFYFTNVTRQ 514 (584)
Q Consensus 442 ~p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLATDDp----~Vi~Eak-kYp~--y~fy~t~I~r~ 514 (584)
.+.|+|+||.=.+. +.+..+.+.|.++++++.+.. -+|+|..... +..++.. ..++ ..+
T Consensus 103 ~~~~~i~i~~~a~~---~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~-------- 168 (247)
T PF01075_consen 103 KDKPYIGINPGASW---PSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINL-------- 168 (247)
T ss_dssp TTSSEEEEE---SS---GGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEE--------
T ss_pred ccCCeEEEeecCCC---ccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEee--------
Confidence 46899999986555 677788899999998875443 3455543333 3444444 2221 112
Q ss_pred cCCchHHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHH
Q 007937 515 VGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGM 564 (584)
Q Consensus 515 ~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~EL 564 (584)
.|..++. -=+-+++.||++||. .|....|+.-+
T Consensus 169 ~~~~~l~----------------e~~ali~~a~~~I~~-Dtg~~HlA~a~ 201 (247)
T PF01075_consen 169 AGKTSLR----------------ELAALISRADLVIGN-DTGPMHLAAAL 201 (247)
T ss_dssp TTTS-HH----------------HHHHHHHTSSEEEEE-SSHHHHHHHHT
T ss_pred cCCCCHH----------------HHHHHHhcCCEEEec-CChHHHHHHHH
Confidence 1222221 124678999999986 45555666544
No 11
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=39.86 E-value=1.5e+02 Score=31.44 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=61.4
Q ss_pred CCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC--CchHHHHHhh-cCCCceEEecccccccCCchH
Q 007937 444 RPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST--EMQEVVDKSK-LYPHWNFYFTNVTRQVGNMTM 520 (584)
Q Consensus 444 ~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLAT--DDp~Vi~Eak-kYp~y~fy~t~I~r~~g~~s~ 520 (584)
+|+|++|.= --...++-.+.+.|-+.++.+.++. -+|+|.. ||.++.+++. .+++..- ..|..+.
T Consensus 175 ~~~i~i~pg--~s~~~~K~wp~e~~~~l~~~l~~~~---~~Vvl~g~~~e~e~~~~i~~~~~~~~~-------l~~k~sL 242 (334)
T COG0859 175 RPYIVINPG--ASRGSAKRWPLEHYAELAELLIAKG---YQVVLFGGPDEEERAEEIAKGLPNAVI-------LAGKTSL 242 (334)
T ss_pred CCeEEEecc--ccccccCCCCHHHHHHHHHHHHHCC---CEEEEecChHHHHHHHHHHHhcCCccc-------cCCCCCH
Confidence 699999973 1112455688889999999988777 4666644 7888888887 6665221 1233332
Q ss_pred HHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 007937 521 AIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 566 (584)
Q Consensus 521 a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELRq 566 (584)
.+. +.+++.||++||+ .|....|+.-+--
T Consensus 243 ~e~----------------~~li~~a~l~I~~-DSg~~HlAaA~~~ 271 (334)
T COG0859 243 EEL----------------AALIAGADLVIGN-DSGPMHLAAALGT 271 (334)
T ss_pred HHH----------------HHHHhcCCEEEcc-CChHHHHHHHcCC
Confidence 221 3456899997775 6777788776644
No 12
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=38.83 E-value=83 Score=32.89 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=35.3
Q ss_pred CCCcEEEEeCCchHHHHHhhcCCCceEEecccccccCCchHHHHhhhcC
Q 007937 480 PHLNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVGNMTMAIYEASLG 528 (584)
Q Consensus 480 p~~rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g~~s~a~y~~~~g 528 (584)
....+|+|||||+.|.+-.+++.. +...|....++|+-..++-.+.++
T Consensus 41 s~~~rvvVATDde~I~~av~~~G~-~avmT~~~h~SGTdR~~Ev~~~l~ 88 (247)
T COG1212 41 SGADRVVVATDDERIAEAVQAFGG-EAVMTSKDHQSGTDRLAEVVEKLG 88 (247)
T ss_pred cCCCeEEEEcCCHHHHHHHHHhCC-EEEecCCCCCCccHHHHHHHHhcC
Confidence 367899999999999999998844 555666666667666655544443
No 13
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=34.08 E-value=1.9e+02 Score=30.49 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCC-cEEEEeCCchHHHHHhh-----cCCCceEEecccccccCCchHHHHhhhcCCcccchhHHHHH
Q 007937 467 KYMLLADRIRKHFPHL-NSIWLSTEMQEVVDKSK-----LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNF 540 (584)
Q Consensus 467 eYM~~Ve~~~~~~p~~-rrIFLATDDp~Vi~Eak-----kYp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl 540 (584)
.+.|+++.+.+..... ++||+....|.|.+++. +||+-++ +...+|-.+-.+. . .++.-
T Consensus 92 ~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~i----vg~h~GYf~~~e~----------~-~i~~~ 156 (253)
T COG1922 92 AGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKI----VGSHDGYFDPEEE----------E-AIVER 156 (253)
T ss_pred ChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceE----EEecCCCCChhhH----------H-HHHHH
Confidence 3567777777665554 79999999999999986 3897777 3333342221111 1 24444
Q ss_pred HHHhcCCceEEcCCC
Q 007937 541 LMATDSDFFIGALGS 555 (584)
Q Consensus 541 ~LLseCDyfVGTfSS 555 (584)
.-.+..|.+..-+++
T Consensus 157 I~~s~pdil~VgmG~ 171 (253)
T COG1922 157 IAASGPDILLVGMGV 171 (253)
T ss_pred HHhcCCCEEEEeCCC
Confidence 556777776666655
No 14
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=33.84 E-value=59 Score=35.44 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=46.3
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHh-----CCCC-cEEEEeCCchHHHHHhhcCCCceEEecccccccC
Q 007937 443 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKH-----FPHL-NSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG 516 (584)
Q Consensus 443 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~-----~p~~-rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g 516 (584)
..-.||+=| +..-.|.+..+.|+.. .++. .+.||-||+|..+.....-|..++..-.|....+
T Consensus 97 ~n~tIGL~v-----------fA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP~i~l~~~r~~~V~~v~~~~~ 165 (337)
T PF03414_consen 97 QNITIGLTV-----------FATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVPRIELGPGRRLKVFEVQEEKR 165 (337)
T ss_dssp CT-EEEEEE-----------EE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS------TTEEEEEEE-SGGSS
T ss_pred cCceEEEEE-----------EecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCCccccCCCceeEEEEecccCC
Confidence 345788766 3344455555555432 2443 4899999999988877755555554333332222
Q ss_pred --CchHHHHhhhcCCcccchhHHHHHHHHhcCCceEEc-----CCCcHH
Q 007937 517 --NMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGA-----LGSTWC 558 (584)
Q Consensus 517 --~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGT-----fSSnv~ 558 (584)
..+|.+.+. ..-.+.-+++.|+||++|- |...||
T Consensus 166 Wqd~sm~Rm~~--------i~~~i~~~~~~EvDYLFc~dvd~~F~~~vG 206 (337)
T PF03414_consen 166 WQDISMMRMEM--------ISEHIEQHIQHEVDYLFCMDVDMVFQDHVG 206 (337)
T ss_dssp HHHHHHHHHHH--------HHHHHHHCHHHH-SEEEEEESSEEE-S-B-
T ss_pred CccchhHHHHH--------HHHHHHHHHhhcCCEEEEEecceEEecccC
Confidence 234433311 1112344678999999996 555554
No 15
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=32.91 E-value=1.8e+02 Score=28.08 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=48.8
Q ss_pred CcEEEEeCCchHHHHHhh-----cCCCceEEecccccccCCchHHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCc
Q 007937 482 LNSIWLSTEMQEVVDKSK-----LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGST 556 (584)
Q Consensus 482 ~rrIFLATDDp~Vi~Eak-----kYp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSn 556 (584)
..+|||..+++.+.+++. +||+.++. ....|.....+ ..-+++..-.+..|+++..+++-
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~iv----g~~~g~f~~~~-----------~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIV----GYHHGYFDEEE-----------EEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEE----EecCCCCChhh-----------HHHHHHHHHHcCCCEEEEECCCC
Confidence 458999999999999655 49998873 22223221111 12367777779999999988886
Q ss_pred H-HHHHHHHHhcCC
Q 007937 557 W-CFLIDGMRNTGG 569 (584)
Q Consensus 557 v-~RLi~ELRqt~g 569 (584)
- =+.++++++..+
T Consensus 113 kQE~~~~~~~~~l~ 126 (172)
T PF03808_consen 113 KQERWIARHRQRLP 126 (172)
T ss_pred HHHHHHHHHHHHCC
Confidence 3 356677776654
No 16
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=31.26 E-value=1.8e+02 Score=28.07 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=46.5
Q ss_pred CcEEEEeCCchHHHHHhh-----cCCCceEEecccccccCCchHHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCc
Q 007937 482 LNSIWLSTEMQEVVDKSK-----LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGST 556 (584)
Q Consensus 482 ~rrIFLATDDp~Vi~Eak-----kYp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSn 556 (584)
..+|||....+.+++++. +||+-++.. ...|...... ..-+++..-.++.|+++..+++=
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g----~~~g~~~~~~-----------~~~i~~~I~~~~pdiv~vglG~P 110 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVG----YHHGYFGPEE-----------EEEIIERINASGADILFVGLGAP 110 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEE----ecCCCCChhh-----------HHHHHHHHHHcCCCEEEEECCCC
Confidence 468999999999999854 499988732 1112211111 11266777788899999998875
Q ss_pred HH-HHHHHHHhcC
Q 007937 557 WC-FLIDGMRNTG 568 (584)
Q Consensus 557 v~-RLi~ELRqt~ 568 (584)
-- ..+.++++..
T Consensus 111 kQE~~~~~~~~~l 123 (171)
T cd06533 111 KQELWIARHKDRL 123 (171)
T ss_pred HHHHHHHHHHHHC
Confidence 32 4455555554
No 17
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=31.09 E-value=1.6e+02 Score=30.62 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=48.0
Q ss_pred CCCcEEEEeCCchHHHHHhhcCCCceEEecccccccCCchHHHHhhhcCCcccchhHHHHHHHH-hcCCceEEcCCCcHH
Q 007937 480 PHLNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMA-TDSDFFIGALGSTWC 558 (584)
Q Consensus 480 p~~rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LL-seCDyfVGTfSSnv~ 558 (584)
+-..+|+|+||++++++++++|.--.| +.|... .+. ++.+++..++.-+..+ ...|..+++..++.=
T Consensus 42 ~~fd~VviSsDs~~Il~~A~~ygak~~----~~Rp~~---LA~-----D~ast~~~~lh~le~~~~~~~~~~lLq~TsPL 109 (228)
T COG1083 42 KLFDKVVISSDSEEILEEAKKYGAKVF----LKRPKE---LAS-----DRASTIDAALHALESFNIDEDTLILLQPTSPL 109 (228)
T ss_pred CccceEEEcCCcHHHHHHHHHhCcccc----ccCChh---hcc-----CchhHHHHHHHHHHHhccccCeeEEeccCccc
Confidence 346799999999999999998854344 445421 110 0222222344444333 344668888888888
Q ss_pred HHHHHHHhc
Q 007937 559 FLIDGMRNT 567 (584)
Q Consensus 559 RLi~ELRqt 567 (584)
|-...|+++
T Consensus 110 l~~~~ik~A 118 (228)
T COG1083 110 LTSLHIKEA 118 (228)
T ss_pred cchhHHHHH
Confidence 888888877
No 18
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=30.91 E-value=2.9e+02 Score=28.68 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=55.3
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC-CchHHHHHhh-cCCCceEEecccccccCCchH
Q 007937 443 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST-EMQEVVDKSK-LYPHWNFYFTNVTRQVGNMTM 520 (584)
Q Consensus 443 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLAT-DDp~Vi~Eak-kYp~y~fy~t~I~r~~g~~s~ 520 (584)
.+|+|+||. .+. ....+.-+.+.|.+.++.+... +.+-|.+.+ +|.+..+++. ..++ .. + ...|..++
T Consensus 173 ~~~~i~i~p-ga~-~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~-~~----~-~l~g~~sL 242 (334)
T TIGR02195 173 ERPIIAFCP-GAE-FGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPG-EL----R-NLAGETSL 242 (334)
T ss_pred CCCEEEEcC-CCC-CCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCc-cc----c-cCCCCCCH
Confidence 478999998 332 1245778888899999887543 344455555 3444455554 2222 11 0 11132322
Q ss_pred HHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHH
Q 007937 521 AIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMR 565 (584)
Q Consensus 521 a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELR 565 (584)
. -=.-+++.||.+||+ .|..-.|+.-+.
T Consensus 243 ~----------------el~ali~~a~l~I~~-DSGp~HlAaA~~ 270 (334)
T TIGR02195 243 D----------------EAVDLIALAKAVVTN-DSGLMHVAAALN 270 (334)
T ss_pred H----------------HHHHHHHhCCEEEee-CCHHHHHHHHcC
Confidence 2 224578899999986 556667766553
No 19
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=29.48 E-value=3.4e+02 Score=27.89 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=55.4
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC-C-chHHHHHhh-cCCCceEEecccccccCCch
Q 007937 443 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST-E-MQEVVDKSK-LYPHWNFYFTNVTRQVGNMT 519 (584)
Q Consensus 443 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLAT-D-Dp~Vi~Eak-kYp~y~fy~t~I~r~~g~~s 519 (584)
++|+|++|.-.+. ..+--+.+.|.+.++.+.++ +.+-|++.+ + |....+++. ..++-.+ .|..+
T Consensus 178 ~~~~i~i~~gas~---~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~~~~l--------~g~~s 244 (319)
T TIGR02193 178 PAPYAVLLHATSR---DDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALPGAVV--------LPKMS 244 (319)
T ss_pred CCCEEEEEeCCCc---ccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCCCCee--------cCCCC
Confidence 6899999995542 46778889999999888543 344444423 2 324445554 3333111 12222
Q ss_pred HHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHH
Q 007937 520 MAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGM 564 (584)
Q Consensus 520 ~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~EL 564 (584)
+. -=+.+++.||+|||. .|....|+.-+
T Consensus 245 L~----------------el~ali~~a~l~I~~-DSgp~HlAaa~ 272 (319)
T TIGR02193 245 LA----------------EVAALLAGADAVVGV-DTGLTHLAAAL 272 (319)
T ss_pred HH----------------HHHHHHHcCCEEEeC-CChHHHHHHHc
Confidence 22 225688999999986 55666666644
No 20
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=27.25 E-value=1.3e+02 Score=31.95 Aligned_cols=88 Identities=10% Similarity=0.160 Sum_probs=48.2
Q ss_pred cCHHHHHHHHHHHHHh-----CCC-CcEEEEeCCchHHHHHhhcCCCceEEecccccccC--CchHHHHhhhcCCcccch
Q 007937 463 VEFEKYMLLADRIRKH-----FPH-LNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG--NMTMAIYEASLGRETSTN 534 (584)
Q Consensus 463 ~~~eeYM~~Ve~~~~~-----~p~-~rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g--~~s~a~y~~~~g~~~sl~ 534 (584)
+..-.|....+.|+.. .++ .++-||-||++..+.+.+.-|.-++....|....+ ..+|.+.+. .
T Consensus 41 fatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p~v~lg~~r~~~V~~v~~~~~W~~~sl~Rm~~--------~ 112 (271)
T cd02515 41 FAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVPEVELGPGRRLTVLKIAEESRWQDISMRRMKT--------L 112 (271)
T ss_pred EEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCcccccCCCceeEEEEeccccCCcHHHHHHHHH--------H
Confidence 3334455555544432 244 35899999999988876644444443222322111 234433311 1
Q ss_pred hHHHHHHHHhcCCceEEc-----CCCcHH
Q 007937 535 YPLVNFLMATDSDFFIGA-----LGSTWC 558 (584)
Q Consensus 535 ~iLvDl~LLseCDyfVGT-----fSSnv~ 558 (584)
.-.++-.++.++||+.|- |.++||
T Consensus 113 ~~~~~~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 113 ADHIADRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred HHHHHHhhcccCCEEEEeeCCceEeecCC
Confidence 113444578899999986 666666
No 21
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=25.19 E-value=4.7e+02 Score=27.31 Aligned_cols=96 Identities=14% Similarity=0.202 Sum_probs=57.4
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC-C--chHHHHHhhc-CCCceEEecccccccCCc
Q 007937 443 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST-E--MQEVVDKSKL-YPHWNFYFTNVTRQVGNM 518 (584)
Q Consensus 443 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLAT-D--Dp~Vi~Eakk-Yp~y~fy~t~I~r~~g~~ 518 (584)
..|+|+||.= + . ...+.-+.+.|.+.++.+.+. +.+-|++.+ + |..+.+++.. .+.=. +....|..
T Consensus 180 ~~~~i~i~p~-a-~-~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~-----~~~l~g~~ 249 (344)
T TIGR02201 180 GQNYIVIQPT-S-R-WFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPR-----VTSLAGKL 249 (344)
T ss_pred CCCEEEEeCC-C-C-ccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCc-----ccccCCCC
Confidence 5689999973 2 1 246778888999999988643 333334333 1 3446666652 22101 11112333
Q ss_pred hHHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHH
Q 007937 519 TMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMR 565 (584)
Q Consensus 519 s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELR 565 (584)
++.+. +-+++.||+|||+ .|..-.|+.-+-
T Consensus 250 sL~el----------------~ali~~a~l~Vs~-DSGp~HlAaA~g 279 (344)
T TIGR02201 250 TLPQL----------------AALIDHARLFIGV-DSVPMHMAAALG 279 (344)
T ss_pred CHHHH----------------HHHHHhCCEEEec-CCHHHHHHHHcC
Confidence 33222 3578899999998 788888877654
No 22
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=24.07 E-value=37 Score=39.20 Aligned_cols=44 Identities=30% Similarity=0.542 Sum_probs=30.1
Q ss_pred eEEEEEcCCcccc--cccccCHHHHHHHHHH--------------HH---HhCCCCcEEEEeC
Q 007937 446 MLSMHVRMGDKAC--EMKVVEFEKYMLLADR--------------IR---KHFPHLNSIWLST 489 (584)
Q Consensus 446 iVGVHVRrGDK~~--Ea~~~~~eeYM~~Ve~--------------~~---~~~p~~rrIFLAT 489 (584)
+|-.|-|||||+. -..++.+++|.-...+ .. +.+|.+.+|||+-
T Consensus 535 LI~~HE~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSK 597 (776)
T KOG1123|consen 535 LIKFHERRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSK 597 (776)
T ss_pred HHHHHHhcCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEEee
Confidence 5678999999985 5567888888544331 11 2356677899873
No 23
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=22.46 E-value=3.2e+02 Score=26.84 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=50.2
Q ss_pred HHHHHHHHhCC-CCcEEEEeCCchHHHHHhh-----cCCCceEEecccccccCCchHHHHhhhcCCcccchhHHHHHHHH
Q 007937 470 LLADRIRKHFP-HLNSIWLSTEMQEVVDKSK-----LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMA 543 (584)
Q Consensus 470 ~~Ve~~~~~~p-~~rrIFLATDDp~Vi~Eak-----kYp~y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl~LL 543 (584)
+++..+.+... ...+||+....|.+++++. +||+-++... .|-.+..+ ...+++-.-.
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~-----~g~f~~~~-----------~~~i~~~I~~ 98 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGA-----FGPLEPEE-----------RKAALAKIAR 98 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEE-----CCCCChHH-----------HHHHHHHHHH
Confidence 44444443322 2358999999999988866 3999877321 23222111 1236666677
Q ss_pred hcCCceEEcCCCcHHH-HHHHHHhcC
Q 007937 544 TDSDFFIGALGSTWCF-LIDGMRNTG 568 (584)
Q Consensus 544 seCDyfVGTfSSnv~R-Li~ELRqt~ 568 (584)
+..|+++..+++==-- .+++.++..
T Consensus 99 s~~dil~VglG~PkQE~~~~~~~~~~ 124 (177)
T TIGR00696 99 SGAGIVFVGLGCPKQEIWMRNHRHLK 124 (177)
T ss_pred cCCCEEEEEcCCcHhHHHHHHhHHhC
Confidence 9999999998885332 345555543
No 24
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=20.94 E-value=4.9e+02 Score=27.32 Aligned_cols=100 Identities=9% Similarity=0.084 Sum_probs=53.8
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeCC-chHHHHHhh-cCCCceEEecccccccCCchH
Q 007937 443 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTE-MQEVVDKSK-LYPHWNFYFTNVTRQVGNMTM 520 (584)
Q Consensus 443 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLATD-Dp~Vi~Eak-kYp~y~fy~t~I~r~~g~~s~ 520 (584)
++|+|+||. .+- ....+--+.+.|.+.++.+.. .+.+-|++.+. |....+++. ..+.-.. ..+....|..++
T Consensus 179 ~~~~i~i~p-ga~-~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~--~~~~~l~g~~sL 252 (348)
T PRK10916 179 ERPIIGFCP-GAE-FGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILAALNTEQQ--AWCRNLAGETQL 252 (348)
T ss_pred CCCEEEEeC-CCC-CccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHHhcccccc--cceeeccCCCCH
Confidence 578999999 432 134677888999999988753 23444444442 334444444 2221000 000011122222
Q ss_pred HHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHH
Q 007937 521 AIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMR 565 (584)
Q Consensus 521 a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGTfSSnv~RLi~ELR 565 (584)
--=+.+++.||.+||+ .|..-.|+.-+-
T Consensus 253 ----------------~el~ali~~a~l~I~n-DTGp~HlAaA~g 280 (348)
T PRK10916 253 ----------------EQAVILIAACKAIVTN-DSGLMHVAAALN 280 (348)
T ss_pred ----------------HHHHHHHHhCCEEEec-CChHHHHHHHhC
Confidence 2224688899999886 455556665543
No 25
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=20.75 E-value=1.2e+02 Score=27.85 Aligned_cols=64 Identities=20% Similarity=0.374 Sum_probs=46.9
Q ss_pred CCCCCCCCcccCCccCChhhHHHHHHHHHhhcCCCCCCCCCCceEEEeeccCCCcchhHHHHHHHHHHHHHHhcCc
Q 007937 195 ISEGVYPPWITGSDEENYPLTRKVQRDIWVHQHPPNCWDPNVRFLVADWERLPGFGIGAQIAGMCGLLAIAINEKR 270 (584)
Q Consensus 195 ~~~~~~p~wi~g~dee~~pLT~~vQr~I~~~QNP~DCs~A~~KfLvc~~~~~cGfGcg~H~v~~C~~L~~A~~tgR 270 (584)
++-|..|.|+..-|..-.-+-..+||-.|..|| |++.+. ..|+|.-.|.++-.++|..+++-++
T Consensus 34 VKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~---------KYi~~K---r~gia~~~~v~~g~~~~~Y~~~Y~~ 97 (104)
T PF10206_consen 34 VKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQH---------KYINVK---RGGIAPFFQVLAGYMVFSYCINYKH 97 (104)
T ss_pred eecchhHHHHhhccCCHHHHHHHHHHHHHHHHH---------hhhcee---cCCcchhHHHHHHHHHHHHHHhhcH
Confidence 455788999965565566678899999999999 888753 4678877777666666666665443
No 26
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=20.46 E-value=1.2e+02 Score=29.58 Aligned_cols=55 Identities=9% Similarity=0.214 Sum_probs=35.0
Q ss_pred CCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeCCchHHHHHhhcCC
Q 007937 443 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKLYP 502 (584)
Q Consensus 443 p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLATDDp~Vi~EakkYp 502 (584)
..-+|||..+.+++.....-+ + | +.++..+...|..++|||+ +||.+++.++.|.
T Consensus 79 ~~A~Vgv~~~~~~~~~~~~~i--K-~-~Va~~Vk~~dp~~~~VyVs-aDpd~~~Ri~~~~ 133 (158)
T TIGR02898 79 NYAYVGVDLTNGLEGSVTDEL--K-E-KVAETVKSTDNRIANVYVS-ADPDTVERIRRYG 133 (158)
T ss_pred CEEEEEEEcCCCcchhhHHHH--H-H-HHHHHHHhhCCCcceEEEE-cCHHHHHHHHHHH
Confidence 456999999887664221110 1 1 2233344448999999995 5688999988664
Done!