Query 007937
Match_columns 584
No_of_seqs 167 out of 211
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 14:10:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007937.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007937hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vh1a_ c.68.1.13 (A:) CMP:2-k 33.5 32 0.0023 29.8 6.2 22 481-502 40-61 (246)
2 d1qwja_ c.68.1.13 (A:) CMP acy 26.5 67 0.0049 27.0 7.0 26 480-506 42-67 (228)
3 d1h7ea_ c.68.1.13 (A:) CMP:2-k 23.6 1E+02 0.0076 26.1 7.8 31 472-502 33-63 (245)
4 d1pswa_ c.87.1.7 (A:) ADP-hept 23.4 79 0.0058 28.2 7.2 98 442-564 178-279 (348)
5 d1vica_ c.68.1.13 (A:) CMP:2-k 21.7 81 0.0059 27.0 6.6 22 481-502 40-61 (255)
6 d1o7qa_ c.68.1.9 (A:) alpha-1, 15.4 59 0.0043 30.8 4.3 65 480-552 76-143 (287)
7 d2g8oa1 d.117.1.1 (A:1-264) Th 14.5 35 0.0026 31.9 2.3 73 474-554 117-200 (264)
8 d1tswa_ d.117.1.1 (A:) Thymidy 14.0 31 0.0023 33.2 1.8 99 444-554 143-252 (316)
9 d1lzia_ c.68.1.9 (A:) Glycosyl 13.0 41 0.003 31.9 2.3 94 445-552 52-148 (283)
10 d2ejna1 a.101.1.1 (A:1-72) All 12.4 72 0.0052 24.4 3.1 23 465-500 18-40 (72)
No 1
>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}
Probab=33.46 E-value=32 Score=29.83 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=19.5
Q ss_pred CCcEEEEeCCchHHHHHhhcCC
Q 007937 481 HLNSIWLSTEMQEVVDKSKLYP 502 (584)
Q Consensus 481 ~~rrIFLATDDp~Vi~EakkYp 502 (584)
...+|||||||..+.+.+++|.
T Consensus 40 ~i~~iiVsTd~~~i~~~~~~~g 61 (246)
T d1vh1a_ 40 GAERIIVATDHEDVARAVEAAG 61 (246)
T ss_dssp TCSEEEEEESCHHHHHHHHHTT
T ss_pred CCCcEEEEecCccccchhhccc
Confidence 4689999999999999999874
No 2
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.54 E-value=67 Score=27.02 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=21.6
Q ss_pred CCCcEEEEeCCchHHHHHhhcCCCceE
Q 007937 480 PHLNSIWLSTEMQEVVDKSKLYPHWNF 506 (584)
Q Consensus 480 p~~rrIFLATDDp~Vi~EakkYp~y~f 506 (584)
.....|+|+|||..+.+.+++|. ..+
T Consensus 42 ~~id~Iivstd~~~i~~~~~~~~-~~~ 67 (228)
T d1qwja_ 42 GVFQSVWVSTDHDEIENVAKQFG-AQV 67 (228)
T ss_dssp TCCSEEEEEESCHHHHHHHHHTT-CEE
T ss_pred CCcceEEEecchhhhhhhhhhcC-ccc
Confidence 45678999999999999999884 344
No 3
>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}
Probab=23.63 E-value=1e+02 Score=26.07 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=23.3
Q ss_pred HHHHHHhCCCCcEEEEeCCchHHHHHhhcCC
Q 007937 472 ADRIRKHFPHLNSIWLSTEMQEVVDKSKLYP 502 (584)
Q Consensus 472 Ve~~~~~~p~~rrIFLATDDp~Vi~EakkYp 502 (584)
+-+-..+-....+|+|+||+..+.+.++.|-
T Consensus 33 ~i~~a~~~~~~d~Iiv~td~~~i~~~~~~~~ 63 (245)
T d1h7ea_ 33 VYERALQVAGVAEVWVATDDPRVEQAVQAFG 63 (245)
T ss_dssp HHHHHHTCTTCCEEEEEESCHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCeEEEecccccchhhhhhcC
Confidence 3333344556779999999999999999773
No 4
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]}
Probab=23.43 E-value=79 Score=28.24 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=55.0
Q ss_pred CCCCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEE-eCCchHHHHHhhc-CCC-ceEEecccccccCCc
Q 007937 442 IPRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWL-STEMQEVVDKSKL-YPH-WNFYFTNVTRQVGNM 518 (584)
Q Consensus 442 ~p~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFL-ATDDp~Vi~Eakk-Yp~-y~fy~t~I~r~~g~~ 518 (584)
-.+|+|++|. |-...+.+.-+.+.|.++++.+.++++ +-|++ ..+|....++..+ ... ... .+....|..
T Consensus 178 ~~~~~i~~~~--~~~~~~~k~wp~~~~~~L~~~l~~~~~--~ivl~g~~~e~~~~~~~~~~~~~~~~~---~~~~l~g~~ 250 (348)
T d1pswa_ 178 SERPMIGFCP--GAEFGPAKRWPHYHYAELAKQLIDEGY--QVVLFGSAKDHEAGNEILAALNTEQQA---WCRNLAGET 250 (348)
T ss_dssp SSSCEEEEEC--CCTTCGGGSCCHHHHHHHHHHHHHTTC--EEEECCCGGGHHHHHHHHTTSCHHHHT---TEEECTTTS
T ss_pred cCCCeEEecc--ccchhhccccchHHHhhhHHHHhhcCC--ccccccccchHHHHHHHHHhhhccccc---ccccccCCc
Confidence 3588999998 334446677899999999998877543 32333 2334445555442 110 000 011111222
Q ss_pred hHHHHhhhcCCcccchhHHHH-HHHHhcCCceEEcCCCcHHHHHHHH
Q 007937 519 TMAIYEASLGRETSTNYPLVN-FLMATDSDFFIGALGSTWCFLIDGM 564 (584)
Q Consensus 519 s~a~y~~~~g~~~sl~~iLvD-l~LLseCDyfVGTfSSnv~RLi~EL 564 (584)
+ |.+ +.++..||++||.= |....|+.-+
T Consensus 251 s-----------------l~el~~li~~a~l~I~~D-tg~~HlAaa~ 279 (348)
T d1pswa_ 251 Q-----------------LDQAVILIAACKAIVTND-SGLMHVAAAL 279 (348)
T ss_dssp C-----------------HHHHHHHHHTSSEEEEES-SHHHHHHHHT
T ss_pred c-----------------HHHHHHHHhcceeEeecC-ccHHHHHHHc
Confidence 2 233 46889999999864 4555666554
No 5
>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}
Probab=21.73 E-value=81 Score=26.98 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.3
Q ss_pred CCcEEEEeCCchHHHHHhhcCC
Q 007937 481 HLNSIWLSTEMQEVVDKSKLYP 502 (584)
Q Consensus 481 ~~rrIFLATDDp~Vi~EakkYp 502 (584)
...+|+|+|||+++.+.+++|.
T Consensus 40 ~i~~IiVsTd~~~i~~~~~~~~ 61 (255)
T d1vica_ 40 GASRVIIATDNENVADVAKSFG 61 (255)
T ss_dssp TCSEEEEEESCHHHHHHHHHTT
T ss_pred CCCeEEEEcCCcccchhhhhhc
Confidence 3578999999999999999874
No 6
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.43 E-value=59 Score=30.84 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=34.2
Q ss_pred CC-CcEEEEeCCchHHHHHhhcCCCceEEecccccccC--CchHHHHhhhcCCcccchhHHHHHHHHhcCCceEEc
Q 007937 480 PH-LNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG--NMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGA 552 (584)
Q Consensus 480 p~-~rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~g--~~s~a~y~~~~g~~~sl~~iLvDl~LLseCDyfVGT 552 (584)
|+ .+..||-||++.-+.....-|.-++....|....+ .++|.++.. ..-.+.=.++.++||++|-
T Consensus 76 ~g~~v~yyVFTD~~~~~P~i~l~~~r~~~v~~v~~~~~Wp~iTL~Rm~~--------i~~~i~~~~~~e~Dylf~~ 143 (287)
T d1o7qa_ 76 VGHPVIFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQDISMMRMKT--------IGEHIVAHIQHEVDFLFCM 143 (287)
T ss_dssp TTSCEEEEEEESCGGGCCCCCCCTTEEEEEEECCCCSSHHHHHHHHHHH--------HHHHHHHTHHHHCSEEEEE
T ss_pred CCCeEEEEEEECCcccCCccccCCccceEEEEccccCCCchhHHHHHHH--------HHHHHHHhhhccCCeEEEE
Confidence 44 45899999998655554433443442222221111 234443311 0112245678899999984
No 7
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli [TaxId: 562]}
Probab=14.49 E-value=35 Score=31.89 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=47.8
Q ss_pred HHHHhCCCCcEEEEeCCchHHHHHhhcCCC---ceEEecccccccCCchHHHHhhhcCCcccchhHHHHH--------HH
Q 007937 474 RIRKHFPHLNSIWLSTEMQEVVDKSKLYPH---WNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNF--------LM 542 (584)
Q Consensus 474 ~~~~~~p~~rrIFLATDDp~Vi~EakkYp~---y~fy~t~I~r~~g~~s~a~y~~~~g~~~sl~~iLvDl--------~L 542 (584)
+-.+..|+-||+.+++=+|.-+++....|- ++|+..+ |..++.-+++ |.+.+.++-.|+ .|
T Consensus 117 ~~Lk~~p~sRR~v~~~wnp~~~~~~~l~PC~~~~qf~v~~-----~~L~~~~~qR---S~D~~lG~p~ni~~~~~L~~~i 188 (264)
T d2g8oa1 117 NQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVAD-----GKLSCQLYQR---SCDVFLGLPFNIASYALLVHMM 188 (264)
T ss_dssp HHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEET-----TEEEEEEEEE---EEETTTHHHHHHHHHHHHHHHH
T ss_pred HHhhcCccceeEEEEccchhhhhhccccccceeeEEEEcC-----CCcEEEEEEc---hhhhhhcCChHHHHHHHHHHHH
Confidence 344679999999999999988887777773 4443222 4444444444 344444444443 57
Q ss_pred HhcCCceEEcCC
Q 007937 543 ATDSDFFIGALG 554 (584)
Q Consensus 543 LseCDyfVGTfS 554 (584)
+..|++-+|.+.
T Consensus 189 A~~~gl~~G~~~ 200 (264)
T d2g8oa1 189 AQQCDLEVGDFV 200 (264)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHhhccCceEEE
Confidence 889999988854
No 8
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei [TaxId: 1582]}
Probab=14.05 E-value=31 Score=33.19 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=57.9
Q ss_pred CCeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCCCcEEEEeCCchHHHHHhhcCCC---ceEEecccccccCCchH
Q 007937 444 RPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKLYPH---WNFYFTNVTRQVGNMTM 520 (584)
Q Consensus 444 ~PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~~rrIFLATDDp~Vi~EakkYp~---y~fy~t~I~r~~g~~s~ 520 (584)
-|+-|.+.|.-+.-.. ..++..-..+++ .+..|+-||+.+++=+|.-+++....|- ++|+..+ |..++
T Consensus 143 g~~YG~qwr~~~~~~~---~~~DQl~~vi~~-Lk~~p~sRR~iis~Wnp~~~~~~~lpPCh~~~qf~v~~-----g~L~~ 213 (316)
T d1tswa_ 143 GLVYGSQWRAWHTSKG---DTIDQLGDVIEQ-IKTHPYSRALIVSAWNPEDVPTMALPPCHTLYQFYVND-----GKLSL 213 (316)
T ss_dssp CSSHHHHHHCEECSSS---CEECHHHHHHHH-HHHCTTCSCCEEECCCTTTGGGCSSCCSEEEEEEEEET-----TEEEE
T ss_pred ccccccceeeccccCC---cchhHHHHHHHH-hhcchhccceeeeeCCHHHhccCCCcccchhheeeecC-----CceEE
Confidence 3566666664322111 122333334433 4678999999999999998887777773 4443221 44444
Q ss_pred HHHhhhcCCcccchh--------HHHHHHHHhcCCceEEcCC
Q 007937 521 AIYEASLGRETSTNY--------PLVNFLMATDSDFFIGALG 554 (584)
Q Consensus 521 a~y~~~~g~~~sl~~--------iLvDl~LLseCDyfVGTfS 554 (584)
.-++|+ .+.+.+ .++--+||..|++=+|.+.
T Consensus 214 ~~~qRS---~D~~lG~pfNi~~yalL~~~iA~~~gl~~G~~~ 252 (316)
T d1tswa_ 214 QLYQRS---ADIFLGVPFNIASYALLTHLVAHECGLEVGEFI 252 (316)
T ss_dssp EEEEEE---EETTTTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEcc---hheeeeCcHHHHHHHHHHHHHHHHHhccCceEE
Confidence 444442 232322 3444567889999988864
No 9
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.02 E-value=41 Score=31.93 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=47.4
Q ss_pred CeEEEEEcCCcccccccccCHHHHHHHHHHHHHhCCC-CcEEEEeCCchHHHHHhhcCCCceEEeccccccc--CCchHH
Q 007937 445 PMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPH-LNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQV--GNMTMA 521 (584)
Q Consensus 445 PiVGVHVRrGDK~~Ea~~~~~eeYM~~Ve~~~~~~p~-~rrIFLATDDp~Vi~EakkYp~y~fy~t~I~r~~--g~~s~a 521 (584)
=+|||=|=-|-|- ..-++.|++-|++++. |+ .++.||-||++.-+.+...-+.-++..-.|.... ...++.
T Consensus 52 ~tIgl~vfATGkY----~~Fl~~f~eSaek~Fm--pg~~v~yyvFTD~~~~vP~i~l~~~~~v~v~~i~~~~~Wp~iTL~ 125 (283)
T d1lzia_ 52 TTIGLTVFAIKKY----VAFLKLFLETAEKHFM--VGHRVHYYVFTDQPAAVPRVTLGTGRQLSVLEVRAYKRWQDVSMR 125 (283)
T ss_dssp CEEEEEEEECGGG----GGGHHHHHHHHHHHBS--TTSEEEEEEEESCGGGSCCCCCCTTEEEEEEECC-----------
T ss_pred ceEEEEEEEeChH----HHHHHHHHHHHHHhcC--CCCeeEEEEEECCCccCCccccccCCceEEEeccCCCCCchHHHH
Confidence 4788877444443 2235677777776632 44 3589999999876665553444344221121000 022333
Q ss_pred HHhhhcCCcccchhHHHHHHHHhcCCceEEc
Q 007937 522 IYEASLGRETSTNYPLVNFLMATDSDFFIGA 552 (584)
Q Consensus 522 ~y~~~~g~~~sl~~iLvDl~LLseCDyfVGT 552 (584)
++ ..+.. .+.=.++.++||+++-
T Consensus 126 R~-------~~i~k-~i~~~~~~e~DyLf~~ 148 (283)
T d1lzia_ 126 RM-------EMISD-FCERRFLSEVDYLVCV 148 (283)
T ss_dssp ----------------CHHHHHHHCSEEEEE
T ss_pred HH-------HHHHH-HHHHHhhhcCCEEEEe
Confidence 22 11111 2245688999999883
No 10
>d2ejna1 a.101.1.1 (A:1-72) Allergen Fel d I-A chain {Cat (Felis catus) [TaxId: 9685]}
Probab=12.38 E-value=72 Score=24.42 Aligned_cols=23 Identities=9% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEeCCchHHHHHhhc
Q 007937 465 FEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKL 500 (584)
Q Consensus 465 ~eeYM~~Ve~~~~~~p~~rrIFLATDDp~Vi~Eakk 500 (584)
.++|+++|++| .|||.|++++.+
T Consensus 18 ~eeYveyvkqY-------------~~~p~vLEnae~ 40 (72)
T d2ejna1 18 PDEYVEQVAQY-------------KALPVVLENARI 40 (72)
T ss_dssp HHHHHHHHHHH-------------CCCHHHHHHHHH
T ss_pred hHHHHHHHHHh-------------cCCHHHHHhHHH
Confidence 58999999999 589999999873
Done!