BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007938
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 115/162 (70%), Gaps = 2/162 (1%)
Query: 1 MAPVSLPPGFRFHPTDEELVAYYLKRKINGREIELEIIPEVDLYKCEPWELPGKSLLPSK 60
+ +SLPPGFRF+PTDEEL+ YL RK G + L++I E+DLYK +PW LP K+L K
Sbjct: 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 71
Query: 61 DLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNSQTRSVGMKKTLVYYRGRAPH 120
EWYFFSPRDRKYPNGSR NR +GYWKATG D+ ++++ + VG+KK LV+Y G+AP
Sbjct: 72 --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 129
Query: 121 GIRTHWVMHEYRLDERECETDSGLQDAYALCRVFKKSAIGPK 162
G +T+W+MHEYRL E S D + LCR++KK + K
Sbjct: 130 GTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 115/162 (70%), Gaps = 2/162 (1%)
Query: 1 MAPVSLPPGFRFHPTDEELVAYYLKRKINGREIELEIIPEVDLYKCEPWELPGKSLLPSK 60
+ +SLPPGFRF+PTDEEL+ YL RK G + L++I E+DLYK +PW LP K+L K
Sbjct: 15 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 74
Query: 61 DLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNSQTRSVGMKKTLVYYRGRAPH 120
EWYFFSPRDRKYPNGSR NR +GYWKATG D+ ++++ + VG+KK LV+Y G+AP
Sbjct: 75 --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK 132
Query: 121 GIRTHWVMHEYRLDERECETDSGLQDAYALCRVFKKSAIGPK 162
G +T+W+MHEYRL E S D + LCR++KK + K
Sbjct: 133 GTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 174
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 186 bits (472), Expect = 3e-47, Method: Composition-based stats.
Identities = 86/160 (53%), Positives = 114/160 (71%), Gaps = 7/160 (4%)
Query: 2 APVSLPPGFRFHPTDEELVAYYLKRKINGREIELEIIPEVDLYKCEPWELPGKSLLPSKD 61
A ++LPPGFRFHPTD+ELV +YL RK G+ + + II EVDLYK +PW+LP ++L ++
Sbjct: 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAR- 69
Query: 62 LEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNSQTRSVGMKKTLVYYRGRAPHG 121
EWYFF+PRDRKYPNGSR NRA GYWKATG D+ V + R++G+KK LV+Y G+AP G
Sbjct: 70 -EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG 128
Query: 122 IRTHWVMHEYRL-----DERECETDSGLQDAYALCRVFKK 156
++T W+MHEYRL + S D + LCR++ K
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 7 PPGFRFHPTDEELVAYYL---KRKINGREIELEIIPEVD--------LYKCEPWELPGKS 55
P G R HP +E ++L + I+ R L P +++ PWE+P +
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRRD 74
Query: 56 LLP 58
P
Sbjct: 75 WFP 77
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 7 PPGFRFHPTDEELVAYYL---KRKINGREIELEIIPEVD--------LYKCEPWELPGKS 55
P G R HP +E ++L + I+ R L P +++ PWE+P +
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRRD 74
Query: 56 LLP 58
P
Sbjct: 75 WFP 77
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 7 PPGFRFHPTDEELVAYYL---KRKINGREIELEIIPEVD--------LYKCEPWELPGKS 55
P G R HP +E ++L + I+ R L P +++ PWE+P +
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRRD 74
Query: 56 LLP 58
P
Sbjct: 75 WFP 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,803,379
Number of Sequences: 62578
Number of extensions: 814699
Number of successful extensions: 1554
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1545
Number of HSP's gapped (non-prelim): 6
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)