Query 007938
Match_columns 584
No_of_seqs 171 out of 963
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 14:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 6.8E-52 2.3E-56 392.8 14.8 155 2-158 11-170 (174)
2 1ut7_A No apical meristem prot 100.0 5.8E-52 2E-56 391.9 12.0 157 2-160 13-169 (171)
3 2ehp_A AQ_1627 protein; putati 18.8 48 0.0016 29.8 1.9 13 564-576 25-37 (126)
4 1ldd_A APC2WHB, anaphase promo 13.0 89 0.003 26.0 1.9 27 7-34 37-64 (74)
5 4dox_A Coat protein; all helix 9.2 1.5E+02 0.0053 29.3 2.5 20 9-28 158-177 (226)
6 2ayd_A WRKY transcription fact 5.8 1.2E+02 0.004 25.4 -0.2 45 215-267 14-58 (76)
7 1f6k_A N-acetylneuraminate lya 5.7 2.1E+02 0.0072 28.2 1.6 19 6-25 106-124 (293)
8 3dz1_A Dihydrodipicolinate syn 5.6 2.3E+02 0.0077 28.4 1.8 18 6-25 109-126 (313)
9 4h4g_A (3R)-hydroxymyristoyl-[ 5.6 3.1E+02 0.011 24.8 2.6 29 435-465 96-124 (160)
10 2ehh_A DHDPS, dihydrodipicolin 5.6 2.2E+02 0.0074 28.1 1.6 18 6-24 102-119 (294)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=6.8e-52 Score=392.78 Aligned_cols=155 Identities=55% Similarity=1.095 Sum_probs=135.3
Q ss_pred CCCCCCCCceECCChHHHHHHHHHHHHcCCCCCCCceeccCCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCCCCcc
Q 007938 2 APVSLPPGFRFHPTDEELVAYYLKRKINGREIELEIIPEVDLYKCEPWELPGKSLLPSKDLEWYFFSPRDRKYPNGSRTN 81 (584)
Q Consensus 2 APv~LPPGFRF~PTDEELV~~YLrpKI~G~plp~~~I~EVDVY~~EPWELPg~~~~~g~D~EWYFFSpR~RKypnGsR~n 81 (584)
+++.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+.. ++.+||||++|++||++|.|++
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSC
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCce
Confidence 56789999999999999999999999999999999999999999999999998754 3569999999999999999999
Q ss_pred eeccCceEeecCCceeeccCcceeEEEEEEEeecCcCCCCCccCeEEEEEEeCCCcccc-----CCCCCCceEEEEEEEc
Q 007938 82 RATKAGYWKATGKDRKVNSQTRSVGMKKTLVYYRGRAPHGIRTHWVMHEYRLDERECET-----DSGLQDAYALCRVFKK 156 (584)
Q Consensus 82 RaTggGyWKatGkdK~I~s~g~iVG~KKTLvFY~GraP~G~KTgWVMhEYrL~~~~~~~-----~~~~qDe~VLCRIykK 156 (584)
|+|++||||++|++++|.+++++||+||+|+||.|++|+|.||+|+||||+|.+..... .....++|||||||+|
T Consensus 89 R~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp EEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEES
T ss_pred eecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEc
Confidence 99999999999999999988999999999999999999999999999999999865421 1123589999999999
Q ss_pred CC
Q 007938 157 SA 158 (584)
Q Consensus 157 s~ 158 (584)
+.
T Consensus 169 ~~ 170 (174)
T 3ulx_A 169 KN 170 (174)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=5.8e-52 Score=391.88 Aligned_cols=157 Identities=55% Similarity=1.062 Sum_probs=131.8
Q ss_pred CCCCCCCCceECCChHHHHHHHHHHHHcCCCCCCCceeccCCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCCCCcc
Q 007938 2 APVSLPPGFRFHPTDEELVAYYLKRKINGREIELEIIPEVDLYKCEPWELPGKSLLPSKDLEWYFFSPRDRKYPNGSRTN 81 (584)
Q Consensus 2 APv~LPPGFRF~PTDEELV~~YLrpKI~G~plp~~~I~EVDVY~~EPWELPg~~~~~g~D~EWYFFSpR~RKypnGsR~n 81 (584)
+++.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+.. ++.+||||++|++||++|.|++
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~--g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CC
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhc--CCccEEEEeccccccCCCCccc
Confidence 56789999999999999999999999999999999999999999999999998643 4679999999999999999999
Q ss_pred eeccCceEeecCCceeeccCcceeEEEEEEEeecCcCCCCCccCeEEEEEEeCCCccccCCCCCCceEEEEEEEcCCCC
Q 007938 82 RATKAGYWKATGKDRKVNSQTRSVGMKKTLVYYRGRAPHGIRTHWVMHEYRLDERECETDSGLQDAYALCRVFKKSAIG 160 (584)
Q Consensus 82 RaTggGyWKatGkdK~I~s~g~iVG~KKTLvFY~GraP~G~KTgWVMhEYrL~~~~~~~~~~~qDe~VLCRIykKs~~~ 160 (584)
|+|++||||++|++++|.+++++||+||+|+||+|++|++.||+|+||||+|............++|||||||+|+...
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence 9999999999999999998889999999999999999999999999999999986532223356899999999998653
No 3
>2ehp_A AQ_1627 protein; putative protein, NPPSFA, national project protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eiu_A
Probab=18.77 E-value=48 Score=29.77 Aligned_cols=13 Identities=54% Similarity=1.249 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhh
Q 007938 564 FLTISLALCTMWA 576 (584)
Q Consensus 564 ~~~~~~~~~~~~~ 576 (584)
++-|-|||||.|.
T Consensus 25 L~R~GLALCtLl~ 37 (126)
T 2ehp_A 25 LFRIGLALCTLWI 37 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567899999995
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=13.01 E-value=89 Score=25.95 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCCceECC-ChHHHHHHHHHHHHcCCCCC
Q 007938 7 PPGFRFHP-TDEELVAYYLKRKINGREIE 34 (584)
Q Consensus 7 PPGFRF~P-TDEELV~~YLrpKI~G~plp 34 (584)
|.|+.|.. |++||-. ||..++....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67999998 9999987 799999877654
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=9.22 E-value=1.5e+02 Score=29.30 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=15.0
Q ss_pred CceECCChHHHHHHHHHHHH
Q 007938 9 GFRFHPTDEELVAYYLKRKI 28 (584)
Q Consensus 9 GFRF~PTDEELV~~YLrpKI 28 (584)
|..+.||++|++.+=..+++
T Consensus 158 GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 158 GLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp CCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 89999999999998544443
No 6
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=5.79 E-value=1.2e+02 Score=25.43 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=32.2
Q ss_pred CCCCCccccccccCcCCCCCCCCCCCCCCCCCCCCcccchhhhhccccccCCC
Q 007938 215 QAHDGKWTQFLSEDSFGLNSTTPFSNYATTPYHPCKIDVALECAKLQHRLSLP 267 (584)
Q Consensus 215 ~~~~~~w~~~~s~~~~~~~~~~~~~ny~~~~~~~s~~d~~~~~~~~q~~~~~~ 267 (584)
..++..|+.++-....+ +.|+..+|.|+. -+|...++.|+-..=|
T Consensus 14 ~~DGy~WRKYGQK~ikg-------s~~PRsYYrCt~-~gC~a~K~Ver~~~d~ 58 (76)
T 2ayd_A 14 VNDGYRWRKYGQKSVKG-------SPYPRSYYRCSS-PGCPVKKHVERSSHDT 58 (76)
T ss_dssp CCCSSCEEEEEEECCTT-------CSSCEEEEEECS-TTCCCEEEEEECSSST
T ss_pred CCCCchhhhCcccccCC-------CCCceeEeEcCC-CCCCceeeEEEECCCC
Confidence 35668999999888776 456677788875 3777777777754333
No 7
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=5.69 E-value=2.1e+02 Score=28.18 Aligned_cols=19 Identities=21% Similarity=0.411 Sum_probs=13.7
Q ss_pred CCCCceECCChHHHHHHHHH
Q 007938 6 LPPGFRFHPTDEELVAYYLK 25 (584)
Q Consensus 6 LPPGFRF~PTDEELV~~YLr 25 (584)
+||-| |.||+++|+.||-.
T Consensus 106 ~~P~y-~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 106 VTPFY-YKFSFPEIKHYYDT 124 (293)
T ss_dssp ECCCS-SCCCHHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHHH
Confidence 45544 78999999997643
No 8
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=5.64 E-value=2.3e+02 Score=28.36 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=13.2
Q ss_pred CCCCceECCChHHHHHHHHH
Q 007938 6 LPPGFRFHPTDEELVAYYLK 25 (584)
Q Consensus 6 LPPGFRF~PTDEELV~~YLr 25 (584)
+||- |.||+++|+.||-.
T Consensus 109 ~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCCT--TCCSHHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHHH
Confidence 5664 55999999997643
No 9
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=5.62 E-value=3.1e+02 Score=24.81 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=23.7
Q ss_pred cceeEeeechhhhheeecccCceEEEEeecc
Q 007938 435 HGMFVSTRQAADTFFHQIVPSQIVQVQLNRA 465 (584)
Q Consensus 435 ~~~~v~t~~~~~~~~~~~~p~~~~~~~~n~~ 465 (584)
-+.|.+.+.+ .|..++.|..+|.+++.-.
T Consensus 96 ~~~l~~i~~~--kF~~~V~PGd~L~i~v~~~ 124 (160)
T 4h4g_A 96 LYYFVGIDNA--RFKRVVEPGDQLILNVTFE 124 (160)
T ss_dssp CEEEEEEEEE--EECSCCCTTCEEEEEEEEE
T ss_pred EEEEeccceE--EECcccCCCCEEEEEEEEE
Confidence 4678888876 5999999999999987654
No 10
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=5.58 E-value=2.2e+02 Score=28.11 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=13.8
Q ss_pred CCCCceECCChHHHHHHHH
Q 007938 6 LPPGFRFHPTDEELVAYYL 24 (584)
Q Consensus 6 LPPGFRF~PTDEELV~~YL 24 (584)
+||- -|.||+++|+.||-
T Consensus 102 ~~P~-y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVPY-YNKPTQRGLYEHFK 119 (294)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4554 47899999999874
Done!