Query 007939
Match_columns 584
No_of_seqs 185 out of 1338
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 17:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 1E-209 2E-214 1653.3 41.7 534 25-582 24-559 (582)
2 PRK13529 malate dehydrogenase; 100.0 3E-205 6E-210 1652.5 48.8 539 22-579 7-548 (563)
3 PTZ00317 NADP-dependent malic 100.0 4E-204 8E-209 1642.8 47.7 542 22-580 9-552 (559)
4 PLN03129 NADP-dependent malic 100.0 1E-201 3E-206 1628.2 48.5 528 29-579 39-568 (581)
5 COG0281 SfcA Malic enzyme [Ene 100.0 2E-114 5E-119 909.9 34.5 404 65-567 1-408 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 3E-108 6E-113 923.1 32.0 366 113-566 26-409 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 6E-108 1E-112 924.8 34.1 365 113-566 30-413 (763)
8 PRK07232 bifunctional malic en 100.0 1E-107 2E-112 919.1 33.9 374 113-576 22-414 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 3E-94 6.6E-99 731.8 28.0 274 296-581 1-274 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 2.8E-95 6E-100 731.4 19.5 255 296-559 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 7.8E-92 1.7E-96 705.7 25.6 251 296-558 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 2.7E-83 5.8E-88 615.6 4.4 181 106-286 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 2E-56 4.3E-61 443.0 21.9 225 296-558 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.7 9.6E-08 2.1E-12 81.4 10.2 86 298-444 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.7 0.0015 3.3E-08 71.7 16.9 120 288-447 173-302 (425)
16 cd00401 AdoHcyase S-adenosyl-L 97.4 0.0021 4.5E-08 70.4 13.3 130 288-459 163-302 (413)
17 PLN02494 adenosylhomocysteinas 97.3 0.0058 1.3E-07 68.0 16.1 125 294-460 231-355 (477)
18 PTZ00075 Adenosylhomocysteinas 97.2 0.015 3.2E-07 64.9 17.5 122 289-447 216-344 (476)
19 TIGR00936 ahcY adenosylhomocys 97.0 0.0069 1.5E-07 66.3 12.6 128 288-457 156-293 (406)
20 cd05211 NAD_bind_Glu_Leu_Phe_V 96.6 0.013 2.9E-07 58.8 10.4 135 299-459 2-140 (217)
21 PRK14982 acyl-ACP reductase; P 96.3 0.013 2.9E-07 62.8 8.7 114 299-448 134-250 (340)
22 PLN02477 glutamate dehydrogena 96.3 0.11 2.5E-06 57.0 15.9 191 243-459 112-324 (410)
23 TIGR01035 hemA glutamyl-tRNA r 96.3 0.018 3.8E-07 62.9 9.7 126 297-455 158-285 (417)
24 cd05213 NAD_bind_Glutamyl_tRNA 96.3 0.023 5.1E-07 59.5 10.0 138 276-448 139-277 (311)
25 PRK14192 bifunctional 5,10-met 96.2 0.018 3.9E-07 60.1 8.6 153 253-459 77-250 (283)
26 cd01080 NAD_bind_m-THF_DH_Cycl 95.8 0.051 1.1E-06 52.7 9.0 88 308-448 32-120 (168)
27 PRK00045 hemA glutamyl-tRNA re 95.7 0.055 1.2E-06 59.1 10.2 121 298-448 161-284 (423)
28 TIGR02853 spore_dpaA dipicolin 95.7 0.076 1.7E-06 55.4 10.7 138 296-472 127-265 (287)
29 PF00670 AdoHcyase_NAD: S-aden 95.6 0.21 4.5E-06 48.6 12.4 121 297-459 3-123 (162)
30 PF01488 Shikimate_DH: Shikima 95.4 0.013 2.9E-07 54.1 3.5 105 319-448 8-113 (135)
31 PRK09414 glutamate dehydrogena 95.4 0.34 7.5E-06 53.9 14.8 194 243-459 138-357 (445)
32 PTZ00079 NADP-specific glutama 95.3 0.47 1E-05 52.9 15.4 189 243-459 143-366 (454)
33 PRK08306 dipicolinate synthase 95.2 0.14 3E-06 53.6 10.4 128 306-472 138-266 (296)
34 PRK14030 glutamate dehydrogena 95.0 0.66 1.4E-05 51.7 15.4 193 243-459 134-357 (445)
35 PRK14175 bifunctional 5,10-met 95.0 0.065 1.4E-06 56.3 7.3 140 253-446 76-232 (286)
36 cd05313 NAD_bind_2_Glu_DH NAD( 95.0 0.19 4.2E-06 52.0 10.6 138 298-459 16-167 (254)
37 PRK14031 glutamate dehydrogena 94.8 0.66 1.4E-05 51.7 14.7 186 243-447 134-347 (444)
38 cd01076 NAD_bind_1_Glu_DH NAD( 94.7 0.15 3.3E-06 51.5 9.0 130 297-448 8-141 (227)
39 PLN00203 glutamyl-tRNA reducta 94.3 0.17 3.6E-06 57.3 8.9 125 299-448 244-373 (519)
40 TIGR02354 thiF_fam2 thiamine b 94.2 0.059 1.3E-06 53.4 4.7 111 316-453 17-128 (200)
41 cd01075 NAD_bind_Leu_Phe_Val_D 94.0 0.34 7.3E-06 47.9 9.6 123 298-459 4-129 (200)
42 PLN00106 malate dehydrogenase 93.8 0.37 8.1E-06 51.4 9.9 133 305-461 4-153 (323)
43 PRK14191 bifunctional 5,10-met 93.8 0.56 1.2E-05 49.4 11.0 130 253-428 75-220 (285)
44 PRK00676 hemA glutamyl-tRNA re 93.7 0.15 3.3E-06 54.8 6.9 126 276-448 136-265 (338)
45 COG0373 HemA Glutamyl-tRNA red 93.7 0.17 3.7E-06 55.8 7.4 215 276-561 139-360 (414)
46 cd05212 NAD_bind_m-THF_DH_Cycl 93.6 0.55 1.2E-05 44.4 9.6 84 301-429 9-92 (140)
47 PRK13940 glutamyl-tRNA reducta 93.1 0.1 2.2E-06 57.3 4.4 97 321-448 179-277 (414)
48 cd05197 GH4_glycoside_hydrolas 93.0 0.14 3.1E-06 56.3 5.5 129 324-470 1-166 (425)
49 TIGR00518 alaDH alanine dehydr 92.8 0.34 7.5E-06 52.3 7.9 98 322-445 166-268 (370)
50 PRK08293 3-hydroxybutyryl-CoA 92.6 0.91 2E-05 46.8 10.3 195 324-565 4-213 (287)
51 PRK14176 bifunctional 5,10-met 92.1 0.43 9.3E-06 50.4 7.4 84 299-428 143-227 (287)
52 PRK12549 shikimate 5-dehydroge 92.1 0.22 4.8E-06 51.8 5.3 49 305-367 112-160 (284)
53 PRK08328 hypothetical protein; 92.0 0.075 1.6E-06 53.6 1.7 124 282-449 7-132 (231)
54 cd01078 NAD_bind_H4MPT_DH NADP 92.0 0.37 7.9E-06 46.6 6.3 54 299-367 7-61 (194)
55 PF00208 ELFV_dehydrog: Glutam 92.0 0.19 4E-06 51.5 4.4 133 295-448 6-152 (244)
56 PRK10792 bifunctional 5,10-met 91.7 0.46 1E-05 50.0 7.1 85 299-429 138-223 (285)
57 PRK06129 3-hydroxyacyl-CoA deh 91.5 1.3 2.9E-05 46.1 10.2 38 484-521 184-221 (308)
58 PRK14189 bifunctional 5,10-met 91.2 0.57 1.2E-05 49.4 7.1 85 299-429 137-222 (285)
59 PRK14194 bifunctional 5,10-met 91.1 0.61 1.3E-05 49.5 7.3 139 253-444 77-231 (301)
60 cd05296 GH4_P_beta_glucosidase 91.0 0.3 6.5E-06 53.8 5.0 130 324-470 1-166 (419)
61 PRK12749 quinate/shikimate deh 90.8 0.39 8.4E-06 50.3 5.4 49 305-367 109-157 (288)
62 PRK09424 pntA NAD(P) transhydr 90.6 1.7 3.6E-05 49.4 10.5 43 408-454 248-296 (509)
63 PRK06223 malate dehydrogenase; 90.5 0.7 1.5E-05 47.9 7.1 126 324-474 3-148 (307)
64 PRK12548 shikimate 5-dehydroge 90.4 0.52 1.1E-05 49.0 5.9 57 289-367 103-159 (289)
65 cd01065 NAD_bind_Shikimate_DH 90.1 0.56 1.2E-05 43.0 5.3 87 305-417 4-90 (155)
66 PRK14178 bifunctional 5,10-met 90.0 0.67 1.5E-05 48.7 6.4 85 298-428 130-215 (279)
67 PRK14183 bifunctional 5,10-met 90.0 0.87 1.9E-05 48.0 7.2 131 253-429 75-221 (281)
68 PTZ00117 malate dehydrogenase; 89.9 1 2.2E-05 47.7 7.7 130 323-474 5-151 (319)
69 PRK14027 quinate/shikimate deh 89.9 0.47 1E-05 49.6 5.1 57 289-367 104-160 (283)
70 PTZ00082 L-lactate dehydrogena 89.8 0.84 1.8E-05 48.5 7.0 128 324-473 7-156 (321)
71 PRK14190 bifunctional 5,10-met 89.7 0.94 2E-05 47.7 7.2 84 299-428 137-221 (284)
72 PRK14174 bifunctional 5,10-met 89.6 3.9 8.4E-05 43.4 11.7 134 253-428 75-226 (295)
73 PF02882 THF_DHG_CYH_C: Tetrah 89.6 1.4 3E-05 42.7 7.8 84 300-429 16-100 (160)
74 PRK00257 erythronate-4-phospha 89.5 2.4 5.3E-05 46.3 10.4 108 299-447 95-210 (381)
75 TIGR01809 Shik-DH-AROM shikima 89.5 0.56 1.2E-05 48.7 5.3 57 289-367 100-158 (282)
76 cd00650 LDH_MDH_like NAD-depen 89.5 0.47 1E-05 48.3 4.7 130 326-475 1-148 (263)
77 PF03807 F420_oxidored: NADP o 89.3 0.77 1.7E-05 39.0 5.2 95 325-446 1-96 (96)
78 PRK02842 light-independent pro 89.1 2.3 4.9E-05 46.8 9.9 92 307-416 277-368 (427)
79 PTZ00325 malate dehydrogenase; 89.0 2 4.4E-05 45.8 9.2 107 322-448 7-129 (321)
80 cd01079 NAD_bind_m-THF_DH NAD 89.0 1.5 3.4E-05 44.0 7.7 104 301-429 34-148 (197)
81 PRK14172 bifunctional 5,10-met 88.8 3 6.6E-05 43.9 10.1 131 253-429 76-222 (278)
82 PRK14619 NAD(P)H-dependent gly 88.7 2.5 5.5E-05 44.1 9.5 32 324-367 5-36 (308)
83 PLN02928 oxidoreductase family 88.6 3.6 7.8E-05 44.2 10.8 147 297-468 120-284 (347)
84 PRK00066 ldh L-lactate dehydro 88.5 2 4.4E-05 45.5 8.7 127 324-473 7-150 (315)
85 PRK14184 bifunctional 5,10-met 88.4 2.8 6.1E-05 44.3 9.6 134 253-428 75-224 (286)
86 PRK14179 bifunctional 5,10-met 88.4 1.3 2.8E-05 46.7 7.1 130 253-428 76-221 (284)
87 TIGR01763 MalateDH_bact malate 88.2 0.67 1.4E-05 48.8 4.9 127 324-474 2-147 (305)
88 PF01262 AlaDh_PNT_C: Alanine 88.2 0.41 9E-06 45.6 3.1 94 322-431 19-130 (168)
89 PRK14166 bifunctional 5,10-met 88.0 4 8.7E-05 43.1 10.4 131 253-429 74-221 (282)
90 PRK00258 aroE shikimate 5-dehy 87.9 0.9 1.9E-05 46.9 5.5 49 305-367 107-156 (278)
91 PF00899 ThiF: ThiF family; I 87.8 0.61 1.3E-05 42.6 3.8 35 323-368 2-36 (135)
92 PRK08605 D-lactate dehydrogena 87.7 3.9 8.4E-05 43.6 10.3 116 297-447 104-239 (332)
93 COG0169 AroE Shikimate 5-dehyd 87.7 0.86 1.9E-05 47.9 5.3 92 253-366 46-158 (283)
94 PRK14177 bifunctional 5,10-met 87.5 1.8 3.8E-05 45.8 7.4 84 300-429 139-223 (284)
95 PF01210 NAD_Gly3P_dh_N: NAD-d 87.5 0.31 6.7E-06 46.0 1.7 88 325-432 1-91 (157)
96 PRK14170 bifunctional 5,10-met 87.3 4.6 9.9E-05 42.7 10.3 131 253-429 75-221 (284)
97 PRK06035 3-hydroxyacyl-CoA deh 87.2 19 0.0004 37.2 14.7 32 324-367 4-35 (291)
98 PRK05086 malate dehydrogenase; 86.6 4 8.7E-05 43.2 9.6 105 324-447 1-121 (312)
99 PRK15438 erythronate-4-phospha 86.3 5 0.00011 44.0 10.3 107 298-445 94-208 (378)
100 TIGR00872 gnd_rel 6-phosphoglu 85.9 4.5 9.6E-05 42.1 9.4 95 325-448 2-97 (298)
101 PRK14187 bifunctional 5,10-met 85.5 2.6 5.5E-05 44.8 7.4 131 253-429 76-224 (294)
102 COG0578 GlpA Glycerol-3-phosph 85.5 5.6 0.00012 45.5 10.5 157 324-562 13-178 (532)
103 TIGR00561 pntA NAD(P) transhyd 85.4 3 6.4E-05 47.4 8.3 122 295-431 134-275 (511)
104 PRK08374 homoserine dehydrogen 85.3 5.2 0.00011 42.8 9.8 109 324-441 3-120 (336)
105 PRK14188 bifunctional 5,10-met 85.3 2 4.2E-05 45.6 6.5 83 299-427 137-220 (296)
106 COG1486 CelF Alpha-galactosida 85.2 0.86 1.9E-05 50.7 3.9 131 322-469 2-169 (442)
107 PRK12921 2-dehydropantoate 2-r 85.1 2.6 5.6E-05 43.1 7.1 103 325-448 2-106 (305)
108 PF00056 Ldh_1_N: lactate/mala 85.0 0.54 1.2E-05 44.0 1.9 113 325-459 2-130 (141)
109 PF02826 2-Hacid_dh_C: D-isome 84.9 2.9 6.3E-05 40.2 7.0 117 313-468 29-149 (178)
110 PRK07066 3-hydroxybutyryl-CoA 84.9 0.91 2E-05 48.4 3.8 111 401-520 103-221 (321)
111 PRK09260 3-hydroxybutyryl-CoA 84.6 2.9 6.2E-05 43.1 7.2 32 324-367 2-33 (288)
112 cd00704 MDH Malate dehydrogena 84.6 4.6 9.9E-05 43.1 8.9 120 325-461 2-140 (323)
113 PRK14171 bifunctional 5,10-met 84.4 3 6.4E-05 44.2 7.3 131 253-429 76-223 (288)
114 PRK15076 alpha-galactosidase; 84.4 1.5 3.3E-05 48.5 5.4 134 324-474 2-174 (431)
115 PRK08223 hypothetical protein; 84.4 0.56 1.2E-05 49.5 1.9 58 279-368 4-61 (287)
116 PLN02516 methylenetetrahydrofo 84.3 3 6.4E-05 44.4 7.3 131 253-429 83-231 (299)
117 PRK14193 bifunctional 5,10-met 84.2 3 6.5E-05 44.0 7.2 133 253-429 76-224 (284)
118 PRK12550 shikimate 5-dehydroge 84.1 1.7 3.6E-05 45.3 5.3 56 289-367 100-155 (272)
119 PRK14169 bifunctional 5,10-met 84.1 3.1 6.8E-05 43.9 7.3 131 253-429 74-220 (282)
120 PRK14181 bifunctional 5,10-met 84.0 8.2 0.00018 40.9 10.3 135 253-429 70-221 (287)
121 cd01979 Pchlide_reductase_N Pc 84.0 6.6 0.00014 42.7 10.0 131 149-345 162-298 (396)
122 PRK14168 bifunctional 5,10-met 83.9 3.1 6.8E-05 44.2 7.2 90 298-429 139-229 (297)
123 cd05291 HicDH_like L-2-hydroxy 83.8 4.4 9.4E-05 42.4 8.2 127 325-473 2-145 (306)
124 cd05298 GH4_GlvA_pagL_like Gly 83.5 1.8 3.9E-05 48.1 5.5 134 324-474 1-171 (437)
125 cd05297 GH4_alpha_glucosidase_ 83.5 1.8 3.9E-05 47.6 5.5 131 325-472 2-170 (423)
126 PRK14180 bifunctional 5,10-met 83.4 3.6 7.8E-05 43.5 7.4 131 253-429 75-222 (282)
127 PRK14182 bifunctional 5,10-met 83.2 3.7 8E-05 43.4 7.4 130 253-429 74-221 (282)
128 PRK12490 6-phosphogluconate de 83.1 4 8.6E-05 42.5 7.6 96 325-448 2-98 (299)
129 PRK09599 6-phosphogluconate de 83.0 4.3 9.3E-05 42.2 7.8 96 325-448 2-98 (301)
130 PRK08644 thiamine biosynthesis 82.9 1 2.3E-05 45.0 3.1 38 316-367 24-61 (212)
131 PF01113 DapB_N: Dihydrodipico 82.9 6.7 0.00014 35.8 8.1 96 325-443 2-98 (124)
132 PRK14173 bifunctional 5,10-met 82.8 3.7 8E-05 43.5 7.2 131 253-429 73-219 (287)
133 PRK08410 2-hydroxyacid dehydro 82.7 24 0.00053 37.3 13.3 163 261-466 59-252 (311)
134 PRK13243 glyoxylate reductase; 82.3 31 0.00068 36.8 14.1 198 262-500 64-291 (333)
135 TIGR02356 adenyl_thiF thiazole 82.2 1.2 2.6E-05 44.0 3.2 38 316-367 17-54 (202)
136 PRK06436 glycerate dehydrogena 82.0 9.6 0.00021 40.4 10.0 109 320-468 119-231 (303)
137 KOG0029 Amine oxidase [Seconda 81.7 0.66 1.4E-05 52.3 1.3 34 324-360 16-49 (501)
138 PLN02897 tetrahydrofolate dehy 81.7 11 0.00024 41.0 10.4 131 253-429 130-278 (345)
139 PRK14167 bifunctional 5,10-met 81.7 13 0.00028 39.6 10.8 135 253-429 75-225 (297)
140 cd00757 ThiF_MoeB_HesA_family 81.6 1.3 2.7E-05 44.5 3.1 107 316-448 17-124 (228)
141 PRK00094 gpsA NAD(P)H-dependen 81.4 3.2 6.9E-05 42.8 6.1 104 325-448 3-109 (325)
142 PLN02616 tetrahydrofolate dehy 81.4 4.2 9.2E-05 44.4 7.2 86 298-429 209-295 (364)
143 TIGR02355 moeB molybdopterin s 81.0 1.3 2.9E-05 45.1 3.2 107 316-448 20-127 (240)
144 PRK12475 thiamine/molybdopteri 80.9 1.2 2.7E-05 47.6 2.9 39 316-368 20-58 (338)
145 PRK12480 D-lactate dehydrogena 80.9 13 0.00029 39.7 10.7 112 298-446 105-236 (330)
146 PRK05600 thiamine biosynthesis 80.8 1.2 2.6E-05 48.3 2.8 124 282-442 19-162 (370)
147 PLN03139 formate dehydrogenase 80.8 34 0.00074 37.7 13.9 202 261-500 117-343 (386)
148 PRK06130 3-hydroxybutyryl-CoA 80.7 8 0.00017 40.1 8.8 31 324-366 5-35 (311)
149 KOG0685 Flavin-containing amin 80.2 0.71 1.5E-05 51.8 0.9 21 324-344 22-42 (498)
150 COG0111 SerA Phosphoglycerate 80.0 12 0.00027 40.0 10.1 98 300-430 104-223 (324)
151 PRK14186 bifunctional 5,10-met 80.0 5.4 0.00012 42.4 7.3 85 299-429 137-222 (297)
152 PRK14185 bifunctional 5,10-met 79.7 5.4 0.00012 42.4 7.2 89 299-429 136-225 (293)
153 KOG2337 Ubiquitin activating E 79.4 1.5 3.2E-05 49.8 3.0 41 321-372 338-378 (669)
154 PF07992 Pyr_redox_2: Pyridine 79.3 1.9 4.1E-05 40.6 3.3 31 325-367 1-31 (201)
155 COG0334 GdhA Glutamate dehydro 79.2 54 0.0012 36.6 14.8 193 241-459 110-325 (411)
156 cd01487 E1_ThiF_like E1_ThiF_l 79.1 1.8 3.9E-05 41.9 3.2 32 325-367 1-32 (174)
157 cd01485 E1-1_like Ubiquitin ac 78.9 1.7 3.7E-05 42.9 3.1 79 316-414 15-94 (198)
158 COG0240 GpsA Glycerol-3-phosph 78.9 3.7 8E-05 44.3 5.7 100 324-444 2-105 (329)
159 cd01483 E1_enzyme_family Super 78.9 1.8 3.9E-05 39.8 3.0 121 325-470 1-121 (143)
160 PRK07531 bifunctional 3-hydrox 78.8 3.7 7.9E-05 46.1 5.9 130 324-478 5-145 (495)
161 TIGR03140 AhpF alkyl hydropero 78.6 3.7 8.1E-05 45.9 5.9 96 254-366 137-243 (515)
162 PRK13581 D-3-phosphoglycerate 78.6 27 0.00058 39.7 12.7 221 262-528 61-304 (526)
163 PRK07679 pyrroline-5-carboxyla 78.4 10 0.00022 39.0 8.5 22 323-344 3-24 (279)
164 PRK07634 pyrroline-5-carboxyla 78.2 5.6 0.00012 39.5 6.5 124 323-478 4-128 (245)
165 PRK07574 formate dehydrogenase 78.2 37 0.00079 37.4 13.2 201 261-499 110-335 (385)
166 PRK05690 molybdopterin biosynt 77.9 2.1 4.5E-05 43.7 3.4 38 316-367 28-65 (245)
167 PLN02602 lactate dehydrogenase 77.8 6.8 0.00015 42.4 7.4 128 324-474 38-183 (350)
168 TIGR02279 PaaC-3OHAcCoADH 3-hy 77.8 13 0.00028 42.1 9.8 36 485-520 186-221 (503)
169 TIGR01381 E1_like_apg7 E1-like 77.6 1.8 3.9E-05 50.4 3.1 36 323-369 338-373 (664)
170 COG0190 FolD 5,10-methylene-te 77.2 5.4 0.00012 42.2 6.2 132 252-429 73-220 (283)
171 PRK07878 molybdopterin biosynt 77.1 1.4 3E-05 48.0 2.0 38 316-367 38-75 (392)
172 PRK15317 alkyl hydroperoxide r 77.0 2.8 6E-05 46.9 4.3 94 257-367 139-243 (517)
173 TIGR00507 aroE shikimate 5-deh 76.9 4.1 8.9E-05 41.7 5.2 48 305-367 102-149 (270)
174 cd01337 MDH_glyoxysomal_mitoch 76.9 15 0.00033 39.1 9.6 127 325-471 2-147 (310)
175 PRK06522 2-dehydropantoate 2-r 76.8 5 0.00011 40.9 5.8 103 325-448 2-104 (304)
176 PRK09310 aroDE bifunctional 3- 76.8 3.6 7.9E-05 46.0 5.2 48 305-367 317-364 (477)
177 PRK07680 late competence prote 76.5 7.2 0.00016 39.8 6.9 98 325-448 2-100 (273)
178 cd00755 YgdL_like Family of ac 76.5 2.2 4.8E-05 43.5 3.1 34 323-367 11-44 (231)
179 COG5322 Predicted dehydrogenas 76.2 2.7 5.9E-05 44.5 3.7 46 297-345 144-190 (351)
180 PTZ00345 glycerol-3-phosphate 75.9 5.2 0.00011 43.5 5.9 22 324-345 12-33 (365)
181 PRK14851 hypothetical protein; 75.8 7.3 0.00016 45.8 7.5 125 316-463 39-194 (679)
182 cd01491 Ube1_repeat1 Ubiquitin 75.6 2.5 5.4E-05 44.6 3.3 122 317-470 16-137 (286)
183 cd05294 LDH-like_MDH_nadp A la 75.4 15 0.00033 38.7 9.1 126 325-471 2-147 (309)
184 cd01336 MDH_cytoplasmic_cytoso 75.1 22 0.00049 37.9 10.3 136 324-476 3-159 (325)
185 cd01492 Aos1_SUMO Ubiquitin ac 75.1 2.3 5E-05 42.0 2.7 80 316-416 17-96 (197)
186 PRK08762 molybdopterin biosynt 75.1 2.4 5.1E-05 45.8 3.1 37 317-367 132-168 (376)
187 PRK07688 thiamine/molybdopteri 74.3 2.8 6.1E-05 44.9 3.4 38 316-367 20-57 (339)
188 TIGR01327 PGDH D-3-phosphoglyc 74.1 36 0.00078 38.7 12.2 221 262-527 59-302 (525)
189 PRK12439 NAD(P)H-dependent gly 73.9 4.5 9.7E-05 43.0 4.7 103 324-448 8-115 (341)
190 PRK10886 DnaA initiator-associ 73.2 10 0.00023 37.8 6.8 87 324-430 42-129 (196)
191 PLN02306 hydroxypyruvate reduc 73.1 21 0.00046 39.2 9.8 204 288-526 109-344 (386)
192 PRK08229 2-dehydropantoate 2-r 73.1 13 0.00029 38.7 8.0 105 324-449 3-112 (341)
193 PRK09754 phenylpropionate diox 72.9 7.2 0.00016 41.8 6.1 36 322-367 2-37 (396)
194 PRK05597 molybdopterin biosynt 72.5 3.3 7.2E-05 44.6 3.4 38 316-367 24-61 (355)
195 cd00300 LDH_like L-lactate deh 72.5 8.7 0.00019 40.3 6.4 125 326-472 1-142 (300)
196 COG0039 Mdh Malate/lactate deh 72.4 10 0.00022 40.7 6.9 115 324-459 1-130 (313)
197 TIGR01283 nifE nitrogenase mol 72.3 5.7 0.00012 44.0 5.2 193 149-416 204-403 (456)
198 PRK06487 glycerate dehydrogena 72.3 57 0.0012 34.7 12.5 192 288-526 89-308 (317)
199 TIGR02622 CDP_4_6_dhtase CDP-g 71.9 3.9 8.4E-05 42.7 3.7 105 323-444 4-127 (349)
200 TIGR01408 Ube1 ubiquitin-activ 71.9 2.1 4.5E-05 52.3 1.8 43 316-367 415-457 (1008)
201 TIGR01758 MDH_euk_cyt malate d 71.8 19 0.00041 38.5 8.8 136 325-477 1-157 (324)
202 PRK11880 pyrroline-5-carboxyla 71.5 18 0.00038 36.6 8.2 121 324-479 3-124 (267)
203 PRK15116 sulfur acceptor prote 71.4 3.7 8E-05 43.0 3.3 41 316-370 26-66 (268)
204 PF02737 3HCDH_N: 3-hydroxyacy 70.8 3.9 8.5E-05 39.7 3.2 31 325-367 1-31 (180)
205 PRK11790 D-3-phosphoglycerate 70.6 1.1E+02 0.0025 33.7 14.7 222 261-528 71-318 (409)
206 TIGR01772 MDH_euk_gproteo mala 70.5 23 0.0005 37.8 9.1 128 325-474 1-148 (312)
207 PRK06270 homoserine dehydrogen 70.0 38 0.00083 36.3 10.7 110 324-441 3-123 (341)
208 PF00070 Pyr_redox: Pyridine n 69.9 5.9 0.00013 32.8 3.7 35 325-371 1-35 (80)
209 cd01339 LDH-like_MDH L-lactate 69.9 6.7 0.00015 40.8 4.9 125 326-473 1-143 (300)
210 PF13738 Pyr_redox_3: Pyridine 69.8 4.4 9.6E-05 38.3 3.3 30 327-367 1-30 (203)
211 TIGR01285 nifN nitrogenase mol 69.7 20 0.00044 39.6 8.8 82 309-416 300-381 (432)
212 PRK07502 cyclohexadienyl dehyd 69.4 27 0.00059 36.3 9.2 34 324-367 7-40 (307)
213 PF03446 NAD_binding_2: NAD bi 68.7 5.4 0.00012 37.7 3.6 95 324-448 2-98 (163)
214 PRK07411 hypothetical protein; 68.4 4.1 8.8E-05 44.5 3.0 38 316-367 34-71 (390)
215 cd01486 Apg7 Apg7 is an E1-lik 67.9 4.7 0.0001 43.2 3.2 32 325-367 1-32 (307)
216 PLN02819 lysine-ketoglutarate 67.7 18 0.00039 44.7 8.4 98 323-431 203-325 (1042)
217 TIGR03376 glycerol3P_DH glycer 67.1 10 0.00023 40.8 5.7 20 325-344 1-20 (342)
218 PTZ00142 6-phosphogluconate de 66.8 13 0.00028 41.9 6.5 102 324-447 2-104 (470)
219 cd05293 LDH_1 A subgroup of L- 66.6 24 0.00053 37.4 8.3 127 324-473 4-148 (312)
220 TIGR01915 npdG NADPH-dependent 66.4 10 0.00023 37.5 5.2 102 325-449 2-106 (219)
221 PRK14618 NAD(P)H-dependent gly 66.1 24 0.00052 37.0 8.1 32 324-367 5-36 (328)
222 PRK06476 pyrroline-5-carboxyla 66.0 1E+02 0.0022 31.2 12.4 96 325-448 2-97 (258)
223 PRK14620 NAD(P)H-dependent gly 66.0 18 0.00039 37.8 7.1 31 325-367 2-32 (326)
224 PRK05442 malate dehydrogenase; 65.6 40 0.00087 36.2 9.7 121 324-461 5-144 (326)
225 PF01494 FAD_binding_3: FAD bi 65.4 5.2 0.00011 40.4 2.9 35 324-370 2-36 (356)
226 PRK06932 glycerate dehydrogena 65.3 43 0.00093 35.5 9.8 141 319-500 143-289 (314)
227 TIGR01292 TRX_reduct thioredox 64.7 5.7 0.00012 39.7 3.0 31 325-367 2-32 (300)
228 PRK15469 ghrA bifunctional gly 64.5 33 0.00071 36.5 8.8 139 320-499 133-277 (312)
229 cd01484 E1-2_like Ubiquitin ac 64.4 6.2 0.00013 40.4 3.2 32 325-367 1-32 (234)
230 PF05834 Lycopene_cycl: Lycope 64.3 7.3 0.00016 41.7 3.9 35 326-370 2-36 (374)
231 TIGR02992 ectoine_eutC ectoine 64.1 63 0.0014 34.3 10.8 107 324-457 130-238 (326)
232 PRK15409 bifunctional glyoxyla 64.0 19 0.0004 38.5 6.8 172 288-500 89-288 (323)
233 KOG0069 Glyoxylate/hydroxypyru 63.9 35 0.00077 37.1 8.9 115 298-446 120-255 (336)
234 PRK06153 hypothetical protein; 63.6 4.8 0.00011 44.4 2.4 105 316-448 172-279 (393)
235 cd01974 Nitrogenase_MoFe_beta 63.5 39 0.00084 37.3 9.4 88 310-417 293-386 (435)
236 PLN02520 bifunctional 3-dehydr 63.4 11 0.00024 42.9 5.3 37 316-367 375-411 (529)
237 cd05290 LDH_3 A subgroup of L- 63.3 41 0.00088 35.7 9.2 126 325-473 1-147 (307)
238 PLN02688 pyrroline-5-carboxyla 62.9 29 0.00063 35.0 7.8 96 325-448 2-99 (266)
239 cd01338 MDH_choloroplast_like 62.6 39 0.00085 36.1 9.0 120 324-461 3-142 (322)
240 PRK00536 speE spermidine synth 62.5 11 0.00025 39.3 4.8 85 324-432 74-159 (262)
241 PRK06249 2-dehydropantoate 2-r 62.5 16 0.00035 38.1 6.0 104 324-448 6-110 (313)
242 PRK06141 ornithine cyclodeamin 62.3 60 0.0013 34.3 10.2 105 324-456 126-232 (314)
243 cd01968 Nitrogenase_NifE_I Nit 62.3 35 0.00075 37.2 8.7 194 149-417 165-365 (410)
244 cd01488 Uba3_RUB Ubiquitin act 61.7 6.7 0.00014 41.5 3.0 32 325-367 1-32 (291)
245 cd01965 Nitrogenase_MoFe_beta_ 61.5 31 0.00068 37.8 8.2 101 317-447 296-399 (428)
246 TIGR01759 MalateDH-SF1 malate 61.0 83 0.0018 33.8 11.1 120 324-461 4-143 (323)
247 TIGR00873 gnd 6-phosphoglucona 60.4 24 0.00052 39.7 7.2 97 326-445 2-99 (467)
248 PRK01710 murD UDP-N-acetylmura 59.7 44 0.00095 36.9 9.0 32 324-367 15-46 (458)
249 PRK06928 pyrroline-5-carboxyla 59.4 45 0.00097 34.4 8.5 100 324-448 2-102 (277)
250 PRK06475 salicylate hydroxylas 58.6 8.3 0.00018 41.2 3.1 22 323-344 2-23 (400)
251 PRK04965 NADH:flavorubredoxin 58.6 15 0.00032 39.1 4.9 42 324-375 3-44 (377)
252 TIGR01470 cysG_Nterm siroheme 57.7 10 0.00022 37.8 3.4 35 321-367 7-41 (205)
253 cd01489 Uba2_SUMO Ubiquitin ac 57.6 10 0.00022 40.5 3.6 32 325-367 1-32 (312)
254 COG0565 LasT rRNA methylase [T 57.3 39 0.00084 35.2 7.5 78 324-420 5-84 (242)
255 PRK08291 ectoine utilization p 56.8 67 0.0015 34.1 9.5 106 324-456 133-240 (330)
256 KOG2304 3-hydroxyacyl-CoA dehy 56.8 7.1 0.00015 40.7 2.1 32 324-367 12-43 (298)
257 cd08237 ribitol-5-phosphate_DH 56.7 2E+02 0.0044 30.0 13.0 33 324-366 165-197 (341)
258 COG0476 ThiF Dinucleotide-util 56.6 8.5 0.00018 39.0 2.7 91 316-429 26-116 (254)
259 PRK12409 D-amino acid dehydrog 56.6 10 0.00022 40.5 3.3 33 324-368 2-34 (410)
260 COG0345 ProC Pyrroline-5-carbo 56.4 73 0.0016 33.5 9.5 35 324-367 2-37 (266)
261 PRK14478 nitrogenase molybdenu 56.3 52 0.0011 36.9 9.0 143 151-353 200-349 (475)
262 PRK06184 hypothetical protein; 56.1 10 0.00022 42.0 3.4 33 323-367 3-35 (502)
263 COG0686 Ald Alanine dehydrogen 55.8 8 0.00017 41.9 2.4 111 324-456 169-290 (371)
264 PRK07877 hypothetical protein; 55.7 18 0.0004 42.9 5.5 39 316-368 103-141 (722)
265 PRK07236 hypothetical protein; 55.6 11 0.00024 40.0 3.5 24 322-345 5-28 (386)
266 PRK07340 ornithine cyclodeamin 55.6 68 0.0015 33.8 9.2 104 324-457 126-231 (304)
267 PRK06719 precorrin-2 dehydroge 55.1 12 0.00027 35.7 3.3 35 321-367 11-45 (157)
268 PTZ00318 NADH dehydrogenase-li 54.9 9 0.0002 41.7 2.7 33 323-367 10-42 (424)
269 PF13407 Peripla_BP_4: Peripla 54.8 31 0.00068 33.6 6.2 146 144-316 53-206 (257)
270 PRK07819 3-hydroxybutyryl-CoA 54.7 11 0.00024 39.2 3.2 22 324-345 6-27 (286)
271 PRK11883 protoporphyrinogen ox 54.7 6 0.00013 42.3 1.3 22 324-345 1-22 (451)
272 COG2072 TrkA Predicted flavopr 54.6 12 0.00026 41.5 3.6 34 324-368 9-42 (443)
273 COG1252 Ndh NADH dehydrogenase 54.6 12 0.00026 41.5 3.5 35 323-367 3-37 (405)
274 TIGR02028 ChlP geranylgeranyl 54.5 10 0.00023 40.9 3.1 20 325-344 2-21 (398)
275 PF13454 NAD_binding_9: FAD-NA 53.9 12 0.00027 35.0 3.1 36 327-369 1-36 (156)
276 COG0499 SAM1 S-adenosylhomocys 53.9 53 0.0012 36.4 8.1 122 293-456 185-306 (420)
277 PRK13512 coenzyme A disulfide 53.7 14 0.00031 40.4 3.9 34 324-367 2-35 (438)
278 TIGR02023 BchP-ChlP geranylger 53.4 11 0.00025 40.1 3.1 31 325-367 2-32 (388)
279 PRK06718 precorrin-2 dehydroge 53.3 14 0.00029 36.8 3.4 34 321-366 8-41 (202)
280 PRK07530 3-hydroxybutyryl-CoA 53.3 13 0.00027 38.4 3.3 32 324-367 5-36 (292)
281 TIGR03366 HpnZ_proposed putati 53.1 28 0.0006 35.3 5.7 47 305-366 107-153 (280)
282 PRK12769 putative oxidoreducta 53.0 12 0.00026 43.2 3.5 33 323-367 327-359 (654)
283 TIGR02371 ala_DH_arch alanine 52.8 82 0.0018 33.6 9.4 106 324-457 129-236 (325)
284 PRK12570 N-acetylmuramic acid- 52.6 44 0.00095 35.4 7.2 39 408-448 127-166 (296)
285 PRK09880 L-idonate 5-dehydroge 52.5 25 0.00053 36.7 5.4 45 307-366 158-202 (343)
286 PRK12810 gltD glutamate syntha 52.3 13 0.00029 41.1 3.5 32 324-367 144-175 (471)
287 PLN02172 flavin-containing mon 52.1 13 0.00028 41.5 3.4 22 323-344 10-31 (461)
288 PRK14106 murD UDP-N-acetylmura 51.9 14 0.0003 40.2 3.6 24 322-345 4-27 (450)
289 PRK04176 ribulose-1,5-biphosph 51.8 8.3 0.00018 39.6 1.7 35 323-369 25-59 (257)
290 PRK05732 2-octaprenyl-6-methox 51.8 13 0.00028 39.1 3.2 35 324-367 4-38 (395)
291 PLN02268 probable polyamine ox 51.7 5.8 0.00012 42.8 0.6 33 325-360 2-34 (435)
292 cd01967 Nitrogenase_MoFe_alpha 51.6 89 0.0019 33.8 9.6 47 149-198 167-214 (406)
293 PRK09564 coenzyme A disulfide 51.6 16 0.00034 39.6 3.9 37 324-370 1-37 (444)
294 TIGR01505 tartro_sem_red 2-hyd 51.5 36 0.00078 35.0 6.3 31 325-367 1-31 (291)
295 PRK07233 hypothetical protein; 51.0 12 0.00026 39.6 2.9 31 325-367 1-31 (434)
296 TIGR01316 gltA glutamate synth 51.0 14 0.00031 40.6 3.5 32 324-367 134-165 (449)
297 PRK12771 putative glutamate sy 50.8 14 0.00031 41.8 3.5 32 324-367 138-169 (564)
298 PF01266 DAO: FAD dependent ox 50.7 15 0.00033 37.1 3.4 33 325-369 1-33 (358)
299 PRK06847 hypothetical protein; 50.5 15 0.00032 38.4 3.4 21 324-344 5-25 (375)
300 PRK14477 bifunctional nitrogen 50.4 36 0.00077 41.5 6.9 192 154-416 196-397 (917)
301 cd05292 LDH_2 A subgroup of L- 50.0 85 0.0019 33.1 8.9 127 325-474 2-145 (308)
302 PRK09126 hypothetical protein; 49.6 14 0.00031 38.9 3.1 22 324-345 4-25 (392)
303 PRK05749 3-deoxy-D-manno-octul 49.5 58 0.0013 35.0 7.7 37 399-441 312-349 (425)
304 TIGR01790 carotene-cycl lycope 48.8 14 0.0003 39.0 2.9 31 326-368 2-32 (388)
305 cd03813 GT1_like_3 This family 48.6 92 0.002 34.4 9.3 38 398-441 362-399 (475)
306 COG0644 FixC Dehydrogenases (f 48.5 16 0.00036 39.2 3.4 36 324-371 4-39 (396)
307 PRK08163 salicylate hydroxylas 48.4 16 0.00034 38.6 3.2 21 324-344 5-25 (396)
308 PLN02852 ferredoxin-NADP+ redu 48.4 22 0.00048 40.3 4.5 34 324-367 27-60 (491)
309 PRK11559 garR tartronate semia 48.2 49 0.0011 34.0 6.7 32 324-367 3-34 (296)
310 PRK00141 murD UDP-N-acetylmura 48.0 17 0.00037 40.4 3.5 25 321-345 13-37 (473)
311 TIGR03169 Nterm_to_SelD pyridi 47.6 12 0.00027 39.2 2.3 36 325-369 1-36 (364)
312 PLN02676 polyamine oxidase 47.6 36 0.00078 38.2 6.0 22 324-345 27-48 (487)
313 TIGR03693 ocin_ThiF_like putat 47.5 54 0.0012 38.5 7.4 137 252-420 71-216 (637)
314 PRK07364 2-octaprenyl-6-methox 47.3 14 0.0003 39.3 2.6 22 324-345 19-40 (415)
315 PRK12770 putative glutamate sy 47.2 19 0.0004 38.1 3.5 32 324-367 19-50 (352)
316 cd01972 Nitrogenase_VnfE_like 47.2 1.3E+02 0.0028 33.1 10.1 156 129-345 136-315 (426)
317 PRK11749 dihydropyrimidine deh 47.2 16 0.00035 40.1 3.1 32 324-367 141-172 (457)
318 PRK12831 putative oxidoreducta 47.1 18 0.00038 40.2 3.4 33 323-367 140-172 (464)
319 cd03466 Nitrogenase_NifN_2 Nit 47.1 1.1E+02 0.0024 33.8 9.5 97 324-447 301-400 (429)
320 PRK06834 hypothetical protein; 47.0 18 0.00039 40.4 3.5 36 321-368 1-36 (488)
321 PF13450 NAD_binding_8: NAD(P) 47.0 18 0.00039 29.7 2.6 30 328-369 1-30 (68)
322 PRK11445 putative oxidoreducta 46.9 18 0.00039 38.2 3.4 30 325-367 3-32 (351)
323 COG1086 Predicted nucleoside-d 46.9 19 0.00042 41.6 3.7 149 242-417 157-334 (588)
324 COG1052 LdhA Lactate dehydroge 46.8 1.1E+02 0.0023 33.1 9.1 91 320-445 143-237 (324)
325 PRK12814 putative NADPH-depend 46.5 18 0.00039 42.0 3.5 33 323-367 193-225 (652)
326 PRK09853 putative selenate red 46.3 17 0.00036 44.8 3.3 33 323-367 539-571 (1019)
327 PRK06753 hypothetical protein; 46.2 18 0.00039 37.9 3.2 20 325-344 2-21 (373)
328 TIGR02032 GG-red-SF geranylger 46.1 17 0.00038 35.9 2.9 33 325-369 2-34 (295)
329 TIGR01214 rmlD dTDP-4-dehydror 46.1 55 0.0012 32.7 6.5 59 325-418 1-60 (287)
330 PLN02545 3-hydroxybutyryl-CoA 46.0 19 0.00041 37.2 3.3 32 324-367 5-36 (295)
331 PRK08219 short chain dehydroge 45.9 60 0.0013 30.9 6.5 23 397-419 59-82 (227)
332 PRK11259 solA N-methyltryptoph 45.6 19 0.00041 37.6 3.2 34 324-369 4-37 (376)
333 PF02719 Polysacc_synt_2: Poly 45.5 14 0.0003 39.4 2.2 82 326-430 1-93 (293)
334 PRK07045 putative monooxygenas 45.4 19 0.00041 38.1 3.3 22 324-345 6-27 (388)
335 PRK06823 ornithine cyclodeamin 45.3 1.4E+02 0.003 31.9 9.7 107 324-458 129-237 (315)
336 PRK01438 murD UDP-N-acetylmura 45.3 24 0.00051 39.0 4.1 27 315-344 11-37 (480)
337 cd03819 GT1_WavL_like This fam 45.2 1.6E+02 0.0034 29.8 9.7 39 398-441 255-293 (355)
338 PRK08849 2-octaprenyl-3-methyl 45.1 19 0.00042 38.3 3.2 32 324-367 4-35 (384)
339 PRK12779 putative bifunctional 45.0 18 0.00039 44.1 3.3 38 324-373 307-348 (944)
340 PRK11730 fadB multifunctional 44.9 17 0.00038 42.8 3.1 108 402-520 413-528 (715)
341 PRK11728 hydroxyglutarate oxid 44.8 21 0.00045 38.1 3.5 34 324-367 3-36 (393)
342 PRK07608 ubiquinone biosynthes 44.8 17 0.00038 38.1 2.9 32 324-367 6-37 (388)
343 PTZ00245 ubiquitin activating 44.5 19 0.00041 38.2 3.0 38 316-367 22-59 (287)
344 TIGR00762 DegV EDD domain prot 44.4 54 0.0012 33.9 6.3 117 209-358 20-142 (275)
345 COG1232 HemY Protoporphyrinoge 44.1 40 0.00086 37.9 5.6 105 324-501 1-111 (444)
346 TIGR00465 ilvC ketol-acid redu 43.8 52 0.0011 35.1 6.2 24 322-345 2-25 (314)
347 KOG2018 Predicted dinucleotide 43.7 22 0.00047 38.7 3.3 40 316-369 70-109 (430)
348 TIGR03315 Se_ygfK putative sel 43.4 20 0.00043 44.2 3.3 33 323-367 537-569 (1012)
349 PRK12266 glpD glycerol-3-phosp 43.3 20 0.00043 40.3 3.1 34 324-369 7-40 (508)
350 KOG2250 Glutamate/leucine/phen 43.3 2E+02 0.0044 33.0 10.8 191 246-459 158-379 (514)
351 PRK14989 nitrite reductase sub 43.1 32 0.00069 41.5 5.0 49 323-379 3-51 (847)
352 cd04951 GT1_WbdM_like This fam 42.9 2.1E+02 0.0046 28.7 10.2 38 398-441 254-291 (360)
353 TIGR00031 UDP-GALP_mutase UDP- 42.8 21 0.00046 39.0 3.2 31 325-367 3-33 (377)
354 PRK12778 putative bifunctional 42.8 23 0.00051 41.7 3.8 33 323-367 431-463 (752)
355 PF02056 Glyco_hydro_4: Family 42.7 18 0.0004 35.9 2.5 110 325-448 1-148 (183)
356 PLN00093 geranylgeranyl diphos 42.7 21 0.00045 39.6 3.2 21 324-344 40-60 (450)
357 PF14606 Lipase_GDSL_3: GDSL-l 42.6 22 0.00047 35.3 2.9 56 203-278 51-107 (178)
358 PRK12416 protoporphyrinogen ox 42.4 17 0.00036 39.7 2.3 46 324-370 2-55 (463)
359 KOG0743 AAA+-type ATPase [Post 42.3 32 0.0007 38.8 4.5 154 115-331 191-345 (457)
360 PRK07588 hypothetical protein; 42.2 22 0.00048 37.7 3.1 20 325-344 2-21 (391)
361 TIGR01984 UbiH 2-polyprenyl-6- 41.9 20 0.00043 37.6 2.7 20 326-345 2-21 (382)
362 TIGR01377 soxA_mon sarcosine o 41.9 23 0.0005 37.0 3.2 33 325-369 2-34 (380)
363 cd01493 APPBP1_RUB Ubiquitin a 41.8 20 0.00044 39.9 2.9 37 317-367 17-53 (425)
364 PRK08773 2-octaprenyl-3-methyl 41.7 18 0.0004 38.3 2.5 32 324-367 7-38 (392)
365 TIGR01317 GOGAT_sm_gam glutama 41.5 24 0.00053 39.4 3.5 32 324-367 144-175 (485)
366 cd05006 SIS_GmhA Phosphoheptos 41.4 95 0.0021 29.6 7.1 22 408-431 101-122 (177)
367 TIGR03143 AhpF_homolog putativ 41.3 22 0.00048 40.4 3.1 32 325-368 6-37 (555)
368 PRK07251 pyridine nucleotide-d 41.2 24 0.00052 38.4 3.3 33 324-368 4-36 (438)
369 PRK08013 oxidoreductase; Provi 41.0 23 0.0005 38.0 3.1 32 324-367 4-35 (400)
370 TIGR01789 lycopene_cycl lycope 40.8 29 0.00062 37.4 3.8 36 326-371 2-37 (370)
371 COG1179 Dinucleotide-utilizing 40.8 21 0.00046 37.4 2.6 41 321-372 28-68 (263)
372 PRK06416 dihydrolipoamide dehy 40.8 23 0.0005 38.7 3.1 33 324-368 5-37 (462)
373 TIGR01286 nifK nitrogenase mol 40.8 1.4E+02 0.003 34.2 9.3 33 309-344 352-384 (515)
374 TIGR00292 thiazole biosynthesi 40.8 16 0.00034 37.6 1.7 35 324-370 22-56 (254)
375 PRK05714 2-octaprenyl-3-methyl 40.7 18 0.0004 38.5 2.3 32 324-367 3-34 (405)
376 PLN02463 lycopene beta cyclase 40.6 22 0.00048 39.6 3.0 32 324-367 29-60 (447)
377 PRK13938 phosphoheptose isomer 40.5 94 0.002 31.0 7.1 23 324-347 46-68 (196)
378 TIGR01862 N2-ase-Ialpha nitrog 40.5 85 0.0018 34.9 7.5 47 149-198 198-245 (443)
379 PF00743 FMO-like: Flavin-bind 40.4 28 0.0006 39.8 3.7 21 324-344 2-22 (531)
380 PRK08244 hypothetical protein; 40.4 24 0.00051 39.0 3.1 22 324-345 3-24 (493)
381 PRK12809 putative oxidoreducta 40.3 26 0.00056 40.6 3.6 34 323-368 310-343 (639)
382 PF03435 Saccharop_dh: Sacchar 40.2 12 0.00026 40.0 0.9 95 326-441 1-96 (386)
383 PRK08243 4-hydroxybenzoate 3-m 40.2 26 0.00057 37.3 3.4 21 324-344 3-23 (392)
384 COG0027 PurT Formate-dependent 40.1 36 0.00079 37.1 4.3 76 315-413 5-80 (394)
385 PRK08655 prephenate dehydrogen 40.0 83 0.0018 35.0 7.3 91 325-445 2-93 (437)
386 TIGR01988 Ubi-OHases Ubiquinon 39.9 22 0.00049 36.9 2.7 31 326-368 2-32 (385)
387 PF13241 NAD_binding_7: Putati 39.8 15 0.00032 32.4 1.2 36 321-368 5-40 (103)
388 TIGR02931 anfK_nitrog Fe-only 39.8 82 0.0018 35.3 7.2 28 149-179 176-203 (461)
389 PRK08268 3-hydroxy-acyl-CoA de 39.8 25 0.00055 39.8 3.3 36 485-520 188-223 (507)
390 PRK11101 glpA sn-glycerol-3-ph 39.7 25 0.00055 39.9 3.3 32 324-367 7-38 (546)
391 COG0677 WecC UDP-N-acetyl-D-ma 39.7 2E+02 0.0042 32.5 9.8 100 307-445 309-421 (436)
392 COG1063 Tdh Threonine dehydrog 39.7 39 0.00085 36.1 4.5 57 296-366 145-201 (350)
393 KOG3851 Sulfide:quinone oxidor 39.6 22 0.00048 38.9 2.6 23 324-346 40-62 (446)
394 PRK08010 pyridine nucleotide-d 39.6 25 0.00054 38.3 3.1 32 324-367 4-35 (441)
395 PRK13369 glycerol-3-phosphate 39.4 24 0.00052 39.4 3.0 32 324-367 7-38 (502)
396 PRK10157 putative oxidoreducta 39.4 24 0.00052 38.6 3.0 32 324-367 6-37 (428)
397 PF02423 OCD_Mu_crystall: Orni 39.2 70 0.0015 33.9 6.3 107 324-458 129-239 (313)
398 cd03796 GT1_PIG-A_like This fa 39.2 1.4E+02 0.0031 31.7 8.6 37 399-441 262-298 (398)
399 PRK04690 murD UDP-N-acetylmura 39.2 26 0.00057 39.0 3.3 23 323-345 8-30 (468)
400 PRK12491 pyrroline-5-carboxyla 39.1 58 0.0013 33.8 5.6 35 324-366 3-37 (272)
401 cd01980 Chlide_reductase_Y Chl 39.0 2.1E+02 0.0046 31.5 10.2 52 149-204 166-217 (416)
402 PTZ00188 adrenodoxin reductase 39.0 34 0.00074 39.1 4.1 33 324-367 40-72 (506)
403 TIGR01318 gltD_gamma_fam gluta 39.0 29 0.00062 38.6 3.5 32 324-367 142-173 (467)
404 PRK01747 mnmC bifunctional tRN 39.0 27 0.00059 40.4 3.5 33 324-368 261-293 (662)
405 cd01490 Ube1_repeat2 Ubiquitin 38.9 28 0.00061 39.0 3.4 37 325-367 1-37 (435)
406 PRK06185 hypothetical protein; 38.6 26 0.00056 37.3 3.0 33 324-368 7-39 (407)
407 PRK08850 2-octaprenyl-6-methox 38.5 26 0.00056 37.5 3.0 32 324-367 5-36 (405)
408 TIGR03169 Nterm_to_SelD pyridi 38.5 63 0.0014 33.9 5.8 40 324-369 146-185 (364)
409 PF03447 NAD_binding_3: Homose 38.5 43 0.00094 29.6 4.0 88 330-441 1-88 (117)
410 PRK05808 3-hydroxybutyryl-CoA 38.4 28 0.00062 35.6 3.2 32 324-367 4-35 (282)
411 PRK07538 hypothetical protein; 38.3 27 0.00059 37.5 3.1 20 325-344 2-21 (413)
412 PRK09897 hypothetical protein; 38.3 31 0.00067 39.5 3.7 34 324-367 2-35 (534)
413 TIGR01350 lipoamide_DH dihydro 38.2 27 0.00059 38.0 3.2 30 325-366 3-32 (461)
414 PRK07589 ornithine cyclodeamin 38.1 1.6E+02 0.0035 32.0 8.9 106 324-457 130-239 (346)
415 PF01946 Thi4: Thi4 family; PD 38.1 33 0.00072 35.5 3.5 34 324-369 18-51 (230)
416 PRK07494 2-octaprenyl-6-methox 38.1 26 0.00056 37.0 2.9 33 324-368 8-40 (388)
417 PF02558 ApbA: Ketopantoate re 38.0 30 0.00066 31.5 3.0 31 326-368 1-31 (151)
418 PRK06407 ornithine cyclodeamin 37.9 68 0.0015 33.9 6.0 107 324-457 118-226 (301)
419 PRK02472 murD UDP-N-acetylmura 37.8 28 0.00062 37.8 3.2 23 323-345 5-27 (447)
420 cd05710 SIS_1 A subgroup of th 37.8 2.1E+02 0.0045 25.7 8.3 61 409-478 48-110 (120)
421 TIGR02053 MerA mercuric reduct 37.8 28 0.0006 38.2 3.1 30 326-367 3-32 (463)
422 PRK00711 D-amino acid dehydrog 37.8 29 0.00062 37.0 3.2 31 325-367 2-32 (416)
423 cd00529 RuvC_resolvase Hollida 37.7 2.2E+02 0.0047 27.0 8.8 75 245-336 41-118 (154)
424 TIGR01282 nifD nitrogenase mol 37.4 1.1E+02 0.0023 34.6 7.6 138 255-416 269-412 (466)
425 PRK14806 bifunctional cyclohex 37.4 81 0.0017 37.0 7.0 94 324-444 4-97 (735)
426 COG2085 Predicted dinucleotide 37.4 86 0.0019 32.1 6.3 22 324-345 2-23 (211)
427 cd05188 MDR Medium chain reduc 37.3 65 0.0014 31.1 5.3 48 305-367 120-167 (271)
428 TIGR03364 HpnW_proposed FAD de 37.3 28 0.0006 36.4 2.9 32 325-368 2-33 (365)
429 cd01833 XynB_like SGNH_hydrola 37.2 65 0.0014 29.3 5.0 66 189-269 18-83 (157)
430 PF12831 FAD_oxidored: FAD dep 37.1 29 0.00062 38.1 3.1 33 326-370 2-34 (428)
431 KOG2711 Glycerol-3-phosphate d 36.9 1.7E+02 0.0038 32.3 8.8 110 323-444 21-139 (372)
432 PRK11199 tyrA bifunctional cho 36.9 1E+02 0.0022 33.5 7.2 32 324-367 99-131 (374)
433 PRK14852 hypothetical protein; 36.8 26 0.00057 43.0 3.0 39 316-368 328-366 (989)
434 PF12227 DUF3603: Protein of u 36.8 16 0.00036 37.0 1.1 26 174-202 51-76 (214)
435 PRK06912 acoL dihydrolipoamide 36.7 30 0.00064 38.1 3.2 31 325-367 2-32 (458)
436 TIGR01373 soxB sarcosine oxida 36.6 37 0.00079 36.3 3.8 36 324-369 31-66 (407)
437 PRK04308 murD UDP-N-acetylmura 36.6 33 0.00072 37.5 3.5 23 323-345 5-27 (445)
438 TIGR03088 stp2 sugar transfera 36.5 2E+02 0.0043 29.8 9.1 37 399-441 265-301 (374)
439 PF03702 UPF0075: Uncharacteri 36.5 45 0.00098 36.5 4.5 106 244-369 213-321 (364)
440 PRK07333 2-octaprenyl-6-methox 36.4 26 0.00055 37.1 2.5 21 325-345 3-23 (403)
441 TIGR02437 FadB fatty oxidation 36.3 29 0.00062 41.1 3.1 107 402-519 413-527 (714)
442 PRK05868 hypothetical protein; 36.3 31 0.00066 36.9 3.1 21 324-344 2-22 (372)
443 TIGR03219 salicylate_mono sali 36.1 32 0.00068 37.0 3.2 21 325-345 2-22 (414)
444 PF13580 SIS_2: SIS domain; PD 36.0 1.3E+02 0.0028 27.8 6.8 29 400-430 95-123 (138)
445 PRK01713 ornithine carbamoyltr 35.8 1.9E+02 0.0041 31.3 8.9 134 260-415 98-232 (334)
446 PRK08132 FAD-dependent oxidore 35.8 31 0.00066 38.8 3.1 21 324-344 24-44 (547)
447 PRK06292 dihydrolipoamide dehy 35.7 33 0.00073 37.4 3.4 32 324-367 4-35 (460)
448 COG3349 Uncharacterized conser 35.7 26 0.00057 39.8 2.6 46 324-372 1-51 (485)
449 PRK01390 murD UDP-N-acetylmura 35.7 35 0.00075 37.5 3.5 25 321-345 7-31 (460)
450 KOG1495 Lactate dehydrogenase 35.6 48 0.001 35.6 4.2 134 323-478 20-170 (332)
451 PRK10262 thioredoxin reductase 35.5 33 0.00071 35.5 3.1 21 324-344 7-27 (321)
452 PRK05976 dihydrolipoamide dehy 35.5 32 0.00069 37.9 3.2 32 324-367 5-36 (472)
453 TIGR01279 DPOR_bchN light-inde 35.4 48 0.001 36.4 4.5 91 307-416 261-351 (407)
454 PRK14694 putative mercuric red 35.2 36 0.00079 37.5 3.6 32 324-367 7-38 (468)
455 PRK06392 homoserine dehydrogen 35.2 1.7E+02 0.0036 31.6 8.4 180 325-523 2-198 (326)
456 COG1748 LYS9 Saccharopine dehy 35.1 40 0.00087 37.3 3.8 85 324-432 2-90 (389)
457 PRK13984 putative oxidoreducta 35.1 35 0.00076 39.0 3.5 32 324-367 284-315 (604)
458 KOG0024 Sorbitol dehydrogenase 35.0 47 0.001 36.3 4.2 48 304-366 155-202 (354)
459 PRK08020 ubiF 2-octaprenyl-3-m 34.9 29 0.00064 36.6 2.7 32 324-367 6-37 (391)
460 TIGR03603 cyclo_dehy_ocin bact 34.8 30 0.00065 37.0 2.7 87 249-367 15-105 (318)
461 TIGR02360 pbenz_hydroxyl 4-hyd 34.8 36 0.00078 36.5 3.4 33 324-368 3-35 (390)
462 PF02254 TrkA_N: TrkA-N domain 34.5 51 0.0011 28.6 3.7 30 326-367 1-30 (116)
463 KOG1494 NAD-dependent malate d 34.5 95 0.0021 33.6 6.2 184 324-525 29-267 (345)
464 PF01408 GFO_IDH_MocA: Oxidore 34.2 88 0.0019 27.2 5.2 83 325-432 2-84 (120)
465 TIGR01771 L-LDH-NAD L-lactate 34.2 97 0.0021 32.7 6.4 124 328-473 1-141 (299)
466 PRK06545 prephenate dehydrogen 34.1 1.3E+02 0.0027 32.4 7.4 22 324-345 1-22 (359)
467 PRK06199 ornithine cyclodeamin 34.1 1.2E+02 0.0026 33.3 7.2 89 324-429 156-251 (379)
468 PRK06567 putative bifunctional 33.9 34 0.00074 42.2 3.3 34 322-367 382-415 (1028)
469 PRK06126 hypothetical protein; 33.8 38 0.00083 37.9 3.5 32 324-367 8-39 (545)
470 PLN02985 squalene monooxygenas 33.8 39 0.00084 38.3 3.6 32 324-367 44-75 (514)
471 COG0665 DadA Glycine/D-amino a 33.8 41 0.0009 35.1 3.6 36 323-370 4-39 (387)
472 TIGR01408 Ube1 ubiquitin-activ 33.8 32 0.00069 42.5 3.0 39 316-368 20-58 (1008)
473 TIGR01181 dTDP_gluc_dehyt dTDP 33.3 1.4E+02 0.003 29.9 7.1 78 325-418 1-83 (317)
474 PRK07208 hypothetical protein; 33.2 39 0.00084 37.0 3.4 23 323-345 4-26 (479)
475 COG3959 Transketolase, N-termi 33.0 1.1E+02 0.0025 31.8 6.4 103 298-414 122-238 (243)
476 TIGR00393 kpsF KpsF/GutQ famil 33.0 1.7E+02 0.0037 29.4 7.7 80 325-445 2-82 (268)
477 PRK12775 putative trifunctiona 33.0 38 0.00083 41.6 3.6 33 323-367 430-462 (1006)
478 PLN02366 spermidine synthase 32.9 66 0.0014 34.3 4.9 158 252-442 35-204 (308)
479 PRK07190 hypothetical protein; 32.9 38 0.00082 37.9 3.3 33 324-368 6-38 (487)
480 PRK09466 metL bifunctional asp 32.9 1.1E+02 0.0023 37.1 7.2 107 323-442 458-571 (810)
481 TIGR00562 proto_IX_ox protopor 32.6 22 0.00049 38.4 1.4 22 324-345 3-24 (462)
482 PRK13748 putative mercuric red 32.3 36 0.00078 38.2 3.0 32 324-367 99-130 (561)
483 PRK00048 dihydrodipicolinate r 32.2 2.5E+02 0.0053 28.8 8.8 88 324-442 2-90 (257)
484 PRK10015 oxidoreductase; Provi 32.2 36 0.00078 37.3 2.9 33 324-368 6-38 (429)
485 TIGR02441 fa_ox_alpha_mit fatt 32.2 36 0.00077 40.5 3.0 107 402-519 435-549 (737)
486 TIGR03736 PRTRC_ThiF PRTRC sys 32.1 50 0.0011 34.2 3.8 43 324-369 12-56 (244)
487 PRK05249 soluble pyridine nucl 32.1 39 0.00084 36.9 3.1 33 324-368 6-38 (461)
488 PRK12815 carB carbamoyl phosph 32.1 66 0.0014 39.8 5.4 74 324-414 8-88 (1068)
489 COG0562 Glf UDP-galactopyranos 32.1 45 0.00097 36.5 3.5 31 325-367 3-33 (374)
490 cd08239 THR_DH_like L-threonin 32.0 84 0.0018 32.4 5.4 48 304-366 149-196 (339)
491 PLN00112 malate dehydrogenase 32.0 1.3E+02 0.0029 33.9 7.3 137 324-476 101-257 (444)
492 PF04820 Trp_halogenase: Trypt 32.0 42 0.0009 37.4 3.4 34 325-367 1-34 (454)
493 COG3380 Predicted NAD/FAD-depe 31.8 43 0.00094 36.0 3.2 32 325-368 3-34 (331)
494 PRK02705 murD UDP-N-acetylmura 31.8 37 0.00081 37.1 2.9 21 325-345 2-22 (459)
495 COG0569 TrkA K+ transport syst 31.8 42 0.00091 33.9 3.1 101 325-447 2-104 (225)
496 TIGR02918 accessory Sec system 31.7 2.5E+02 0.0054 31.8 9.5 38 398-441 384-421 (500)
497 cd03807 GT1_WbnK_like This fam 31.5 3.3E+02 0.0072 26.7 9.3 38 398-441 260-297 (365)
498 PRK12557 H(2)-dependent methyl 31.5 89 0.0019 33.8 5.7 44 398-444 73-116 (342)
499 PRK06183 mhpA 3-(3-hydroxyphen 31.4 40 0.00088 37.8 3.2 21 324-344 11-31 (538)
500 PLN02568 polyamine oxidase 31.1 50 0.0011 37.7 3.9 22 324-345 6-27 (539)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=9.9e-210 Score=1653.32 Aligned_cols=534 Identities=54% Similarity=0.898 Sum_probs=521.1
Q ss_pred ceeecccccccccCCCCccCCCCChHhhhccCCCCCCCCcccCHHHHHHHHHHHHhccccccCCCCCccCchhHHHHHHH
Q 007939 25 PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNR 104 (584)
Q Consensus 25 ~~~~~~~G~~~l~~p~~NKGtaFt~~ER~~l~l~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~ 104 (584)
++..+++|+++|+||++|||+|||.+||++|||||||||.|.|+|+|++||+.+|++++ +||+||+||+.
T Consensus 24 ~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~----------~~l~ky~~L~~ 93 (582)
T KOG1257|consen 24 PVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLT----------SPLAKYIYLMD 93 (582)
T ss_pred ccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhcc----------chHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhhccceeEeeeeccCcccccceecccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCceee
Q 007939 105 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRIL 184 (584)
Q Consensus 105 L~~rNe~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~D~g~i~~~l~nwp~~~v~viVVTDG~rIL 184 (584)
||+|||+|||+++++|++|+||||||||||+|||+||++||+|+|||||++|+|||.++|+|||.++|++||||||||||
T Consensus 94 L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerIL 173 (582)
T KOG1257|consen 94 LQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERIL 173 (582)
T ss_pred HHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccchhhhhhhhhcCCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHC-
Q 007939 185 GLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW- 263 (584)
Q Consensus 185 GLGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~- 263 (584)
||||||++|||||+|||+|||+||||+|++|||||||||||||+||+||+|+|+|++|++|++||+|+||||+||+++|
T Consensus 174 GLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG 253 (582)
T KOG1257|consen 174 GLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYG 253 (582)
T ss_pred cccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEeccCCCChHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHH
Q 007939 264 PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (584)
Q Consensus 264 P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~ 343 (584)
|+++||||||+++|||++|+|||+++|||||||||||+|+|||||+|+|+||++|+| ++|||+|||+||+|||+||+
T Consensus 254 ~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd---~~ilf~GAG~A~~GIA~l~v 330 (582)
T KOG1257|consen 254 PNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSD---HVILFLGAGEAALGIANLIV 330 (582)
T ss_pred cceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCcccc---ceEEEecCchHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHcCCChhhhcCcEEEEecCcccccCCC-CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCC
Q 007939 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF 422 (584)
Q Consensus 344 ~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~-~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~F 422 (584)
.+|+ ++|+|+|||+++|||||++|||+++|+ +++++|++|||+++++ ++|+|||+.||||||||+|+++|+|
T Consensus 331 ~~m~-~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~------~~L~e~V~~vKPtvLiG~S~~~g~F 403 (582)
T KOG1257|consen 331 MAMV-KEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEI------KDLEEAVKEVKPTVLIGASGVGGAF 403 (582)
T ss_pred HHHH-HcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHH------HHHHHHHHhcCCcEEEecccCCccC
Confidence 9999 679999999999999999999999996 9999999999998764 6899999999999999999999999
Q ss_pred CHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHHHH
Q 007939 423 NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGT 502 (584)
Q Consensus 423 teevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~ 502 (584)
||||||+|++ +|||||||||||||++|||||||||+||+||||||||||||||+|+ ||+|+||||||+|+|||||||+
T Consensus 404 teevl~~Ma~-~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~-gK~~~pgQ~NN~yiFPGi~Lg~ 481 (582)
T KOG1257|consen 404 TEEVLRAMAK-SNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYN-GKVYVPGQGNNAYIFPGIGLGV 481 (582)
T ss_pred CHHHHHHHHh-cCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeC-CcEecccCCceeEecchHHHHH
Confidence 9999999975 9999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcccchHHHHHHHHHHHHHcCccCCCCCCChhHhhhhhccC
Q 007939 503 LLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMSKVG 582 (584)
Q Consensus 503 ~~~~a~~Itd~m~~aAA~alA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~g~A~~~~~~~~~~~~~~~~~~ 582 (584)
+++++++|+|+||++||++||+.++++++++|.||||+++||+||.+||++|+++||++|+|+.+| .|+|+..+.++.
T Consensus 482 vlsg~~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p--~P~d~~~~~~~~ 559 (582)
T KOG1257|consen 482 VLSGARRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYP--EPKDKEKFIEES 559 (582)
T ss_pred HHcCCccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCC--CcccHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999876 677766655543
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-205 Score=1652.50 Aligned_cols=539 Identities=46% Similarity=0.794 Sum_probs=519.5
Q ss_pred CCCceeecccccccccCCCCccCCCCChHhhhccCCCCCCCCcccCHHHHHHHHHHHHhccccccCCCCCccCchhHHHH
Q 007939 22 IPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRI 101 (584)
Q Consensus 22 ~~~~~~~~~~G~~~l~~p~~NKGtaFt~~ER~~l~l~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~Ky~~ 101 (584)
......+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+|
T Consensus 7 ~~~~~~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~ 76 (563)
T PRK13529 7 KKRPLYTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKP----------TDLEKHIY 76 (563)
T ss_pred CCcceeecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCC----------ChHHHHHH
Confidence 34445667899999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHhhhccceeEeeeeccCcccccceecccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCc
Q 007939 102 LNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGS 181 (584)
Q Consensus 102 L~~L~~rNe~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~D~g~i~~~l~nwp~~~v~viVVTDG~ 181 (584)
|++||+|||+||||++++|++||||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++|||||||
T Consensus 77 L~~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~ 156 (563)
T PRK13529 77 LRNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGE 156 (563)
T ss_pred HHHHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCcccccchhhhhhhhhcCCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHH
Q 007939 182 RILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHA 261 (584)
Q Consensus 182 rILGLGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~ 261 (584)
|||||||||++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||||++|++||+|+||||++|++
T Consensus 157 rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~ 236 (563)
T PRK13529 157 RILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKR 236 (563)
T ss_pred eeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCeeeEeccCCCChHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHH
Q 007939 262 RWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKM 341 (584)
Q Consensus 262 ~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~l 341 (584)
+||+++||||||+++|||++|+|||+++|||||||||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+|
T Consensus 237 ~~P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d---~riv~~GAGsAgiGia~l 313 (563)
T PRK13529 237 RFPNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSD---QRIVFLGAGSAGCGIADQ 313 (563)
T ss_pred hCCCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCC---cCCcccCCCHHHHhcccCCcEEEeecCC
Q 007939 342 AVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD---FMGLREGASLLEVVRKVKPHVLLGLSGV 418 (584)
Q Consensus 342 i~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~---~~~~~~~~~L~evV~~vkptvLIG~S~~ 418 (584)
|+++|+ ++|+|+|||++|||||||+|||+++|++|+++|++|||+.++ |.......+|+|||+.+|||||||+|++
T Consensus 314 l~~~~~-~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~ 392 (563)
T PRK13529 314 IVAAMV-REGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQ 392 (563)
T ss_pred HHHHHH-HcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCC
Confidence 999999 789999999999999999999999999999999999998654 2211234799999999999999999999
Q ss_pred CCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhh
Q 007939 419 GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGI 498 (584)
Q Consensus 419 ~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGi 498 (584)
+|+|||||||+|++ +|||||||||||||++|||||||||+||+|||||||||||+||+|+ |++++||||||+||||||
T Consensus 393 ~g~Ft~evv~~Ma~-~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~-G~~~~p~Q~NN~~iFPGi 470 (563)
T PRK13529 393 PGAFTEEIVKEMAA-HCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYN-GKTYPIGQCNNAYIFPGL 470 (563)
T ss_pred CCCCCHHHHHHHHh-cCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeC-CeEeccCcCcceeecccc
Confidence 99999999999975 9999999999999999999999999999999999999999999995 999999999999999999
Q ss_pred HHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcccchHHHHHHHHHHHHHcCccCCCCCCChhHhhhh
Q 007939 499 GLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHM 578 (584)
Q Consensus 499 glG~~~~~a~~Itd~m~~aAA~alA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~g~A~~~~~~~~~~~~~~ 578 (584)
|||+++++|++|||+||++||++||+++++++++.+.|||+++++|+||.+||.||+++|+++|+|+.+ +++++...
T Consensus 471 glGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~~---~~~~~~~~ 547 (563)
T PRK13529 471 GLGVIASGARRVTDGMLMAAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARET---SDEDLEQA 547 (563)
T ss_pred hhhhhhcCCcCCCHHHHHHHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCCC---CHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999863 45665554
Q ss_pred h
Q 007939 579 S 579 (584)
Q Consensus 579 ~ 579 (584)
.
T Consensus 548 i 548 (563)
T PRK13529 548 I 548 (563)
T ss_pred H
Confidence 3
No 3
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=3.6e-204 Score=1642.81 Aligned_cols=542 Identities=48% Similarity=0.827 Sum_probs=517.6
Q ss_pred CCCceeecccccccccCCCCccCCCCChHhhhccCCCCCCCCcccCHHHHHHHHHHHHhccccccCCCCCccCchhHHHH
Q 007939 22 IPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRI 101 (584)
Q Consensus 22 ~~~~~~~~~~G~~~l~~p~~NKGtaFt~~ER~~l~l~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~Ky~~ 101 (584)
++....+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+|
T Consensus 9 ~~~~~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~----------~~l~Ky~~ 78 (559)
T PTZ00317 9 SKEKVPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIE----------TPINKYQF 78 (559)
T ss_pred cccccccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCC----------ChHHHHHH
Confidence 34444567899999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHhhhccceeEeeeeccCcccccceecccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCc
Q 007939 102 LNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGS 181 (584)
Q Consensus 102 L~~L~~rNe~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~D~g~i~~~l~nwp~~~v~viVVTDG~ 181 (584)
|++||+|||+||||++++|++||||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++|||||||
T Consensus 79 L~~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~ 158 (559)
T PTZ00317 79 LRNIHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGS 158 (559)
T ss_pred HHHHhhcCchHHHHHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCcccccchhhhhhhhhcCCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHH
Q 007939 182 RILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHA 261 (584)
Q Consensus 182 rILGLGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~ 261 (584)
|||||||||++||||||||++|||+||||||++|||||||||||||+||+||+|+||||+|++|++||+|+||||++|++
T Consensus 159 rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~ 238 (559)
T PTZ00317 159 RILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSS 238 (559)
T ss_pred cccccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCeeeEeccCCCChHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHH
Q 007939 262 RWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKM 341 (584)
Q Consensus 262 ~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~l 341 (584)
+||+++||||||+++|||++|+|||+++|||||||||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+|
T Consensus 239 ~~P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d---~riv~~GAGsAgiGia~l 315 (559)
T PTZ00317 239 RWPNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEE---QRIVFFGAGSAAIGVANN 315 (559)
T ss_pred hCCCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHcCCChhhhcCcEEEEecCcccccCCCC-CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCC
Q 007939 342 AVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGG 420 (584)
Q Consensus 342 i~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~-l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g 420 (584)
|+++|+ ++|+|+|||++||||+||+|||+++|++ |+++|++|||+..+.++ ....+|+|||+.+|||||||+|+++|
T Consensus 316 l~~~m~-~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~-~~~~~L~e~v~~~KPtvLIG~S~~~g 393 (559)
T PTZ00317 316 IADLAA-EYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAED-SSLKTLEDVVRFVKPTALLGLSGVGG 393 (559)
T ss_pred HHHHHH-HcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhcccccccc-ccCCCHHHHHhccCCCEEEEecCCCC
Confidence 999999 7899999999999999999999999975 99999999997532110 12579999999999999999999999
Q ss_pred CCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHH
Q 007939 421 VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGL 500 (584)
Q Consensus 421 ~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGigl 500 (584)
+|||||||+|++ +|+|||||||||||++|||||||||+||+|||||||||||+||+|+ ||+++||||||+||||||||
T Consensus 394 ~Ft~evv~~Ma~-~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~-G~~~~p~Q~NN~~iFPGigl 471 (559)
T PTZ00317 394 VFTEEVVKTMAS-NVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLN-GKTIQPSQGNNLYVFPGVGL 471 (559)
T ss_pred CCCHHHHHHHHh-cCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccC-CeeeccCcCcceeeccchhh
Confidence 999999999975 9999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred HHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcccchHHHHHHHHHHHHHcCccCCCC-CCChhHhhhhh
Q 007939 501 GTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHG-EVGPRDLKHMS 579 (584)
Q Consensus 501 G~~~~~a~~Itd~m~~aAA~alA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~g~A~~~~-~~~~~~~~~~~ 579 (584)
|+++++|++|||+||++||++||+++++++++.+.|||+++++|+||.+||+||+++|+++|+|+..+ +.+++++..+.
T Consensus 472 G~l~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i 551 (559)
T PTZ00317 472 GCAIAQPSYIPDEMLIAAAASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALV 551 (559)
T ss_pred hhHhhcccCCCHHHHHHHHHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998511 12345665554
Q ss_pred c
Q 007939 580 K 580 (584)
Q Consensus 580 ~ 580 (584)
+
T Consensus 552 ~ 552 (559)
T PTZ00317 552 K 552 (559)
T ss_pred H
Confidence 3
No 4
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.4e-201 Score=1628.17 Aligned_cols=528 Identities=59% Similarity=0.957 Sum_probs=513.5
Q ss_pred cccccccccCCCCccCCCCChHhhhccCCCCCCCCcccCHHHHHHHHHHHHhccccccCCCCCccCchhHHHHHHHhhhc
Q 007939 29 HKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDR 108 (584)
Q Consensus 29 ~~~G~~~l~~p~~NKGtaFt~~ER~~l~l~GLLPp~v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~r 108 (584)
..+|.++|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||+|
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~L~~L~~~ 108 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALE----------SPLAKYRALMDLQER 108 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccC----------CcHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cceeEeeeeccCcccccceecccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCceeeccCC
Q 007939 109 NETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188 (584)
Q Consensus 109 Ne~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~D~g~i~~~l~nwp~~~v~viVVTDG~rILGLGD 188 (584)
||+||||++++|++||||||||||||+||++||++||+|||||||++|+|+|+++++|||.++|++||||||||||||||
T Consensus 109 Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (581)
T PLN03129 109 NERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGD 188 (581)
T ss_pred CcccchhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchhhhhhhhhcCCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHC-CCee
Q 007939 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAI 267 (584)
Q Consensus 189 lG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~-P~~l 267 (584)
||++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++||+|+||||++|+++| |+++
T Consensus 189 lG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~ 268 (581)
T PLN03129 189 LGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVL 268 (581)
T ss_pred cCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eEeccCCCChHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHH
Q 007939 268 VQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAA 347 (584)
Q Consensus 268 IqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~ 347 (584)
||||||+++|||+||+|||+++|||||||||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+||+++|+
T Consensus 269 I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d---~riv~~GAGsAgigia~ll~~~~~ 345 (581)
T PLN03129 269 VQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLAD---QRILFAGAGEAGTGIAELIALAMS 345 (581)
T ss_pred EehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhh---ceEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHcCCChhhhcCcEEEEecCcccccCCCC-CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHH
Q 007939 348 RMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEV 426 (584)
Q Consensus 348 ~~~Gls~eeA~~~i~lvDs~GLi~~~r~~-l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteev 426 (584)
+++|+|+|||++||||+|++|||+++|++ |+++|++|||+.+ +..+|+|+|+.+|||||||+|+++|+|||||
T Consensus 346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~ev 419 (581)
T PLN03129 346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE------PGASLLEAVKAIKPTVLIGLSGVGGTFTKEV 419 (581)
T ss_pred hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc------cCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence 54699999999999999999999999976 9999999999853 3579999999999999999999999999999
Q ss_pred HHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHHHHHHhC
Q 007939 427 LKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 506 (584)
Q Consensus 427 v~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~ 506 (584)
||+|++ +|+|||||||||||+++||||||||+||+|||||||||||+||+|+ ||+++||||||+|||||||||+++++
T Consensus 420 i~~Ma~-~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~-Gr~~~p~Q~NN~~iFPGiglGal~~~ 497 (581)
T PLN03129 420 LEAMAS-LNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYN-GKTFHPGQANNAYIFPGIGLGALLSG 497 (581)
T ss_pred HHHHHh-cCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeC-CeeecCccccceeeccchhhHHHhcC
Confidence 999975 9999999999999999999999999999999999999999999995 99999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHhccCCCCCCCCCccccCCCCcccchHHHHHHHHHHHHHcCccCCCCCCChhHhhhhh
Q 007939 507 ARFITDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMS 579 (584)
Q Consensus 507 a~~Itd~m~~aAA~alA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~g~A~~~~~~~~~~~~~~~ 579 (584)
|++|||+||++||++||+++++++++.+.|||++++||+||.+||.||+++|+++|+|+..+ +++++..+.
T Consensus 498 a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~--~~~~~~~~i 568 (581)
T PLN03129 498 AIRVTDDMLLAAAEALAAQVTEEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLP--RPEDLVEYA 568 (581)
T ss_pred CcCCCHHHHHHHHHHHHHhCCcccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCC--CHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998644 456665544
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2.4e-114 Score=909.91 Aligned_cols=404 Identities=36% Similarity=0.515 Sum_probs=365.6
Q ss_pred ccCHHHHHHHHHHHHhccccccCCCCCccCchhHHHHHHHhhhccceeEeeeeccCcccccceecccchHHHHHHHhhcc
Q 007939 65 VISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLF 144 (584)
Q Consensus 65 v~tle~Q~~r~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~ 144 (584)
++|+| |.+|++.++..+.. .+|+||.|| ++|+++||.++-.|..|+|||+||||||++|++|++.|
T Consensus 1 v~t~~-q~~~~~~~~~~~~~---------~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~ 66 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKT---------EALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDP 66 (432)
T ss_pred CccHH-HHHHHHHHHhhhhh---------hhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCc
Confidence 57899 99999999998872 499999999 99999999999999999999999999999999999888
Q ss_pred cCCCccccccCChhhHHHHHhcCCCCCceEEEEecCceeeccCCCCC-CcccccchhhhhhhhhcCCCCCCceeEEeecc
Q 007939 145 RRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV-QGIGIPIGKLDVYVAAAGINPQRILPVMLDVG 223 (584)
Q Consensus 145 r~prGlyis~~D~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~-~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvG 223 (584)
++++ ++.+ ++++|||||||||||||||||+ +||||||||++|||+||||| +|||+||+|
T Consensus 67 ~~~~----~yt~-------------~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~ 126 (432)
T COG0281 67 RKAY----SYTA-------------RGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVG 126 (432)
T ss_pred chhh----hcCC-------------CCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCC
Confidence 8775 2222 4459999999999999999995 89999999999999999999 999999999
Q ss_pred CCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCeeeEeccCCCChHHHHHHHHhhccCccccCcchhHHHH
Q 007939 224 TNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVA 303 (584)
Q Consensus 224 TnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~ 303 (584)
|||+ +++||+++...||+..+|||||..-|+.+.+.|||..+|||||||||||+|+
T Consensus 127 ~~~e------------------------i~~~Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~ 182 (432)
T COG0281 127 TNNE------------------------IIEFVKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVT 182 (432)
T ss_pred ChHH------------------------HHHHHHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCcccccccHHHHHH
Confidence 9985 7899999999999999999998777777777888888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCC--CChhh
Q 007939 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN--LDPAA 381 (584)
Q Consensus 304 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~--l~~~k 381 (584)
|||||||||++|++|+| +||||+|||+||+||+++|+++|+ ++ +|||+|||+|+|+++|++ +++.|
T Consensus 183 lA~llnalk~~gk~l~d---~kiv~~GAGAAgiaia~~l~~~g~-----~~----~~i~~~D~~G~l~~~r~~~~~~~~k 250 (432)
T COG0281 183 LAALLNALKLTGKKLKD---QKIVINGAGAAGIAIADLLVAAGV-----KE----ENIFVVDRKGLLYDGREDLTMNQKK 250 (432)
T ss_pred HHHHHHHHHHhCCCccc---eEEEEeCCcHHHHHHHHHHHHhCC-----Cc----ccEEEEecCCcccCCCcccccchHH
Confidence 99999999999999999 999999999999999999999866 32 799999999999999976 56666
Q ss_pred hcccc-ccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcc
Q 007939 382 APFAK-DPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH 460 (584)
Q Consensus 382 ~~fA~-~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~w 460 (584)
..+|. ...+| .+ .+++ .+||||||+|++ |+||+|+|++|+ ++||||||||||+ |++||||.+|
T Consensus 251 ~~~a~~~~~~~------~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma----~~PiIfalaNP~p--Ei~Pe~a~~~ 314 (432)
T COG0281 251 YAKAIEDTGER------TL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMA----KHPIIFALANPTP--EITPEDAKEW 314 (432)
T ss_pred HHHHHhhhccc------cc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhc----cCCEEeecCCCCc--cCCHHHHhhc
Confidence 67775 44333 21 3355 559999999997 999999999996 4699999999997 9999999999
Q ss_pred cCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCccccCC
Q 007939 461 AGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGILYPSI 540 (584)
Q Consensus 461 T~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~alA~~v~~~~~~~g~l~P~~ 540 (584)
++|++|+||| |+++|+|+||+|+|||||+|++++||++|||+|++|||+|||+++.++.. .+.|+|++
T Consensus 315 ~~~aaivaTG-----------rsd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~ 382 (432)
T COG0281 315 GDGAAIVATG-----------RSDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPP 382 (432)
T ss_pred CCCCEEEEeC-----------CCCCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCC
Confidence 9999999997 55667799999999999999999999999999999999999999987665 78999999
Q ss_pred CCcccchHHHHHHHHHHHHHcCccCCC
Q 007939 541 DSIRDITAEVGAAVLRAAVEEDLAEGH 567 (584)
Q Consensus 541 ~~ir~vs~~VA~aVa~~A~~~g~A~~~ 567 (584)
+++|.+|. ||.||+++|+++|+|+.+
T Consensus 383 ~d~r~~~~-vA~AVa~aA~~~GvA~~~ 408 (432)
T COG0281 383 FDPRVISR-VAVAVAKAAMEEGVARRP 408 (432)
T ss_pred CchhHHHH-HHHHHHHHHHHcCCccCC
Confidence 99998888 999999999999999964
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=2.7e-108 Score=923.12 Aligned_cols=366 Identities=30% Similarity=0.461 Sum_probs=333.1
Q ss_pred EeeeeccCcccccceecccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCceeeccCCCCCC
Q 007939 113 YYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQ 192 (584)
Q Consensus 113 Fy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~D~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~ 192 (584)
--++.+.+.++ |.++|||||+++|+++ +++|+++| ++.+ +.+.|+|||||||||||||+|++
T Consensus 26 ~~~~~~~~~~d-l~l~YtPgVa~~c~~i---~~~p~~~~-~~t~-------------r~n~v~VvtdG~~vLGLGdiG~~ 87 (764)
T PRK12861 26 VASKPLVTQRD-LALAYTPGVASACEEI---AADPLNAF-RFTS-------------RGNLVGVITNGTAVLGLGNIGAL 87 (764)
T ss_pred EeccccCChHH-ceeecCCchHHHHHHH---HhChHhhh-hhhc-------------cCcEEEEEecchhhccCCCcCcc
Confidence 46778888888 6999999999999994 56665553 3333 44569999999999999999997
Q ss_pred c-ccccchhhhhhhhhcCCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCeeeEec
Q 007939 193 G-IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFE 271 (584)
Q Consensus 193 G-m~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~lIqfE 271 (584)
| |||||||++|||+||||| +||+|||| +|| |+|| |||+++..+||+ ||||
T Consensus 88 a~~pvmeGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~--i~lE 138 (764)
T PRK12861 88 ASKPVMEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG--INLE 138 (764)
T ss_pred cccchHHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC--ceee
Confidence 5 999999999999999999 67777777 788 7899 999999999988 9999
Q ss_pred cCCCChHHHHHHHHhhc--cCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHH
Q 007939 272 DFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (584)
Q Consensus 272 Df~~~nAf~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~ 349 (584)
||+++|||+||+|||++ +|||||||||||+|+|||+|||+|++|++|+| |||||+|||+||+|||++|+.
T Consensus 139 D~~~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d---~~iv~~GAGaAg~~ia~~l~~----- 210 (764)
T PRK12861 139 DIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKE---VKVVTSGAGAAALACLDLLVD----- 210 (764)
T ss_pred eccCchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhH---cEEEEECHhHHHHHHHHHHHH-----
Confidence 99999999999999994 99999999999999999999999999999999 999999999999999999865
Q ss_pred cCCChhhhcCcEEEEecCcccccCCCC-CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007939 350 AGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (584)
Q Consensus 350 ~Gls~eeA~~~i~lvDs~GLi~~~r~~-l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~ 428 (584)
.|+++| ||||+||+|||+++|++ |+++|++||++++ ..+|+|+|++ ||||||+|+ +|+||+|+|+
T Consensus 211 ~G~~~~----~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~-------~~~L~eai~~--advliG~S~-~g~ft~e~v~ 276 (764)
T PRK12861 211 LGLPVE----NIWVTDIEGVVYRGRTTLMDPDKERFAQETD-------ARTLAEVIGG--ADVFLGLSA-GGVLKAEMLK 276 (764)
T ss_pred cCCChh----hEEEEcCCCeeeCCCcccCCHHHHHHHhhcC-------CCCHHHHHhc--CCEEEEcCC-CCCCCHHHHH
Confidence 588864 99999999999999976 9999999999853 2689999999 899999998 9999999999
Q ss_pred HhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHHHHHHhCCc
Q 007939 429 AMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508 (584)
Q Consensus 429 ~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~ 508 (584)
+|+ +|||||||||||+ ||+||||++ |+|+||||| ||+++|||+||+|+|||||+|+++++|+
T Consensus 277 ~Ma----~~PIIFaLsNPtp--E~~pe~a~~-~~g~aivaT-----------Grs~~pnQ~NN~l~FPgi~~Gal~~~a~ 338 (764)
T PRK12861 277 AMA----ARPLILALANPTP--EIFPELAHA-TRDDVVIAT-----------GRSDYPNQVNNVLCFPYIFRGALDVGAT 338 (764)
T ss_pred Hhc----cCCEEEECCCCCc--cCCHHHHHh-cCCCEEEEe-----------CCcCCCCccceeeecchhhHHHHHcCCc
Confidence 995 5999999999997 999999987 999999999 5999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCCCCC------------CCc--cccCCCCcccchHHHHHHHHHHHHHcCccCC
Q 007939 509 FITDGMLQQAAECLASYMTDEEIP------------KGI--LYPSIDSIRDITAEVGAAVLRAAVEEDLAEG 566 (584)
Q Consensus 509 ~Itd~m~~aAA~alA~~v~~~~~~------------~g~--l~P~~~~ir~vs~~VA~aVa~~A~~~g~A~~ 566 (584)
+|||+|+++||++||+++++++++ .+. |+|+..+ ++||.+||.||+++|+++|+|+.
T Consensus 339 ~I~~~M~~aAa~alA~~~~~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~ 409 (764)
T PRK12861 339 TITREMEIAAVHAIAGLAEEEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR 409 (764)
T ss_pred cCCHHHHHHHHHHHHhhCCcccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999987533 444 5597777 57999999999999999999996
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=6e-108 Score=924.84 Aligned_cols=365 Identities=29% Similarity=0.445 Sum_probs=335.1
Q ss_pred EeeeeccCcccccceecccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCceeeccCCCCCC
Q 007939 113 YYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQ 192 (584)
Q Consensus 113 Fy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~D~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~ 192 (584)
--++.+.+.++ |.++|||||+++|+++. +|++.++++. .+.+.|+|||||||||||||+|++
T Consensus 30 ~~~~~~~~~~d-l~~~ytpgv~~~~~~i~-------------~~~~~~~~~t----~~~n~v~vvtdg~~vLGlGd~G~~ 91 (763)
T PRK12862 30 APTKPLANQRD-LALAYSPGVAAPCLEIA-------------ADPANAARYT----SRGNLVAVVSNGTAVLGLGNIGPL 91 (763)
T ss_pred EecCCCCCHHH-ceeeeCCchHHHHHHHH-------------hChHhhhhcc----cCCcEEEEEechhhhccccccCcc
Confidence 36778888888 69999999999999976 5665555333 366789999999999999999997
Q ss_pred c-ccccchhhhhhhhhcCCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCe-eeEe
Q 007939 193 G-IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQF 270 (584)
Q Consensus 193 G-m~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-lIqf 270 (584)
| |||||||++|||+||||| +||+||||+ || ||||++|+++||++ +|||
T Consensus 92 ~~~pv~egK~~l~~~~~gi~-------~~~i~~~~~----d~-------------------d~~v~~v~~~~p~f~~i~~ 141 (763)
T PRK12862 92 ASKPVMEGKAVLFKKFAGID-------VFDIELDES----DP-------------------DKLVEIVAALEPTFGGINL 141 (763)
T ss_pred cccchHHHHHHHHHhhcCCC-------ccccccCCC----CH-------------------HHHHHHHHHhCCCcceeee
Confidence 5 999999999999999999 556666675 75 99999999999995 9999
Q ss_pred ccCCCChHHHHHHHHhhc--cCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHH
Q 007939 271 EDFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAAR 348 (584)
Q Consensus 271 EDf~~~nAf~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~ 348 (584)
|||+++|||+||+|||++ +|||||||||||+|+|||||||+|++|++|+| |||||+|||+||+|||++|+.
T Consensus 142 ED~~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~---- 214 (763)
T PRK12862 142 EDIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIED---VKLVASGAGAAALACLDLLVS---- 214 (763)
T ss_pred ecccCchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhh---cEEEEEChhHHHHHHHHHHHH----
Confidence 999999999999999998 89999999999999999999999999999999 999999999999999999987
Q ss_pred HcCCChhhhcCcEEEEecCcccccCCCC-CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHH
Q 007939 349 MAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVL 427 (584)
Q Consensus 349 ~~Gls~eeA~~~i~lvDs~GLi~~~r~~-l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv 427 (584)
.|+++ +|||||||+|||+++|++ |+++|++||++++ ..+|+|+|+. ||||||+|+ +|+||+|||
T Consensus 215 -~G~~~----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~-------~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v 279 (763)
T PRK12862 215 -LGVKR----ENIWVTDIKGVVYEGRTELMDPWKARYAQKTD-------ARTLAEVIEG--ADVFLGLSA-AGVLKPEMV 279 (763)
T ss_pred -cCCCc----ccEEEEcCCCeeeCCCCccccHHHHHHhhhcc-------cCCHHHHHcC--CCEEEEcCC-CCCCCHHHH
Confidence 48874 799999999999999975 9999999999853 2689999999 999999999 999999999
Q ss_pred HHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHHHHHHhCC
Q 007939 428 KAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGA 507 (584)
Q Consensus 428 ~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a 507 (584)
++|+ +|||||||||||+ ||+||||++||+| |||||| |+++|||+||+|+|||||+|+++++|
T Consensus 280 ~~M~----~~piifalsNP~~--E~~p~~a~~~~~~-~i~atG-----------rs~~p~Q~NN~~~FPgi~~g~l~~~a 341 (763)
T PRK12862 280 KKMA----PRPLIFALANPTP--EILPEEARAVRPD-AIIATG-----------RSDYPNQVNNVLCFPYIFRGALDVGA 341 (763)
T ss_pred HHhc----cCCEEEeCCCCcc--cCCHHHHHHhcCC-EEEEEC-----------CcCCCCcccceeeccchhhhHHhcCC
Confidence 9995 7999999999997 9999999999999 999995 99999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHhccCCCCC--------------CCCCccccCCCCcccchHHHHHHHHHHHHHcCccCC
Q 007939 508 RFITDGMLQQAAECLASYMTDEE--------------IPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEG 566 (584)
Q Consensus 508 ~~Itd~m~~aAA~alA~~v~~~~--------------~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~g~A~~ 566 (584)
++|||+|+++||++||+++++++ +...+|||+..+ ++||..||.||+++|+++|+|+.
T Consensus 342 ~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~ 413 (763)
T PRK12862 342 TTINEEMKIAAVRAIAELAREEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR 413 (763)
T ss_pred eeCCHHHHHHHHHHHHhcccccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999873 345569997777 67999999999999999999996
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=9.8e-108 Score=919.08 Aligned_cols=374 Identities=30% Similarity=0.462 Sum_probs=343.6
Q ss_pred EeeeeccCcccccceecccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCceeeccCCCCCC
Q 007939 113 YYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQ 192 (584)
Q Consensus 113 Fy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~D~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~ 192 (584)
--++.+.+.++ |+++|||||+++|+ +|+++|+++| ++.++| +.|+|||||+|||||||+|++
T Consensus 22 ~~~~~~~~~~d-l~~~Ytpgv~~~c~---~i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~ 83 (752)
T PRK07232 22 TPTKPLATQRD-LSLAYSPGVAAPCL---EIAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGAL 83 (752)
T ss_pred EeccccCChhh-cceecCCchHHHHH---HHHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccc
Confidence 46777888888 69999999999999 4567888888 777665 459999999999999999997
Q ss_pred -cccccchhhhhhhhhcCCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCe-eeEe
Q 007939 193 -GIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQF 270 (584)
Q Consensus 193 -Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-lIqf 270 (584)
|||||+||++||++||||| ++|+||||+ | +||||++|+.+||++ +|||
T Consensus 84 a~~pv~egK~~l~~~~~gid-------~~~i~~~~~----d-------------------~de~v~~v~~~~p~~g~i~~ 133 (752)
T PRK07232 84 ASKPVMEGKGVLFKKFAGID-------VFDIEVDEE----D-------------------PDKFIEAVAALEPTFGGINL 133 (752)
T ss_pred cCccHHHHHHHHHHhhcCCC-------ccccccCCC----C-------------------HHHHHHHHHHhCCCccEEee
Confidence 9999999999999999999 566666675 4 899999999999998 9999
Q ss_pred ccCCCChHHHHHHHHhhc--cCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHH
Q 007939 271 EDFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAAR 348 (584)
Q Consensus 271 EDf~~~nAf~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~ 348 (584)
|||+++|||+||+|||++ +|||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||+||+.
T Consensus 134 ED~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~---- 206 (752)
T PRK07232 134 EDIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIED---VKIVVSGAGAAAIACLNLLVA---- 206 (752)
T ss_pred eecCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECccHHHHHHHHHHHH----
Confidence 999999999999999998 79999999999999999999999999999999 999999999999999999986
Q ss_pred HcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHH
Q 007939 349 MAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVL 427 (584)
Q Consensus 349 ~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv 427 (584)
.|++ ++||||+|++|||+++| ++|+++|++||++++ ..+|+|+|+. ||||||+|+ +|+||+|+|
T Consensus 207 -~G~~----~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~-------~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v 271 (752)
T PRK07232 207 -LGAK----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTD-------ARTLAEAIEG--ADVFLGLSA-AGVLTPEMV 271 (752)
T ss_pred -cCCC----cccEEEEcCCCeecCCCcccccHHHHHHhccCC-------CCCHHHHHcC--CCEEEEcCC-CCCCCHHHH
Confidence 4887 68999999999999999 579999999999843 3689999999 999999998 999999999
Q ss_pred HHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHHHHHHhCC
Q 007939 428 KAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGA 507 (584)
Q Consensus 428 ~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a 507 (584)
++|+ +|||||||||||+ ||+||||++||+| +||||| |+++|||+||+|+|||||+|++++||
T Consensus 272 ~~M~----~~piifalsNP~~--E~~p~~a~~~~~~-~i~atG-----------rs~~pnQ~NN~~~FPgi~~g~l~~~a 333 (752)
T PRK07232 272 KSMA----DNPIIFALANPDP--EITPEEAKAVRPD-AIIATG-----------RSDYPNQVNNVLCFPYIFRGALDVGA 333 (752)
T ss_pred HHhc----cCCEEEecCCCCc--cCCHHHHHHhcCC-EEEEEC-----------CcCCCCcccceeecchhhHHHHHcCC
Confidence 9995 6999999999997 9999999999999 999995 99999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHhccCCCC--------------CCCCCccccCCCCcccchHHHHHHHHHHHHHcCccCCCCCCChh
Q 007939 508 RFITDGMLQQAAECLASYMTDE--------------EIPKGILYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPR 573 (584)
Q Consensus 508 ~~Itd~m~~aAA~alA~~v~~~--------------~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~g~A~~~~~~~~~ 573 (584)
++|||+|+++||++||++++++ ++...+|+|+.++.| |+..||.||+++|+++|+|+.+ --+.+
T Consensus 334 ~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~iip~~~~~~-~~~~va~av~~~a~~~g~a~~~-~~~~~ 411 (752)
T PRK07232 334 TTINEEMKLAAVRAIAELAREEVSDEVAAAYGGQKLSFGPEYIIPKPFDPR-LIVKIAPAVAKAAMDSGVATRP-IADMD 411 (752)
T ss_pred ccCCHHHHHHHHHHHHhhcccccchhhhhhhccccccCCCCccCCCCCChh-HHHHHHHHHHHHHHhhCcccCC-CCCHH
Confidence 9999999999999999999986 678899999999975 9999999999999999999963 12445
Q ss_pred Hhh
Q 007939 574 DLK 576 (584)
Q Consensus 574 ~~~ 576 (584)
++.
T Consensus 412 ~~~ 414 (752)
T PRK07232 412 AYR 414 (752)
T ss_pred HHH
Confidence 443
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=3e-94 Score=731.83 Aligned_cols=274 Identities=53% Similarity=0.838 Sum_probs=260.5
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCC
Q 007939 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (584)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~ 375 (584)
|||||+|+|||+|||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||++||||+|++|||+++|+
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d---~~iv~~GAGsAg~gia~ll~~~~~-~~G~~~eeA~~~i~~vD~~Gll~~~r~ 76 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSD---QRILFLGAGSAGIGIADLIVSAMV-REGLSEEEARKKIWLVDSKGLLTKDRK 76 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-HcCCChhhccCeEEEEcCCCeEeCCCC
Confidence 8999999999999999999999999 999999999999999999999999 689999999999999999999999998
Q ss_pred CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHH
Q 007939 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 455 (584)
Q Consensus 376 ~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpe 455 (584)
+|+++|++|||+.++ .+..+|+|+|+++|||||||+|+++|+||+||||+|++ +|+|||||||||||++||||||
T Consensus 77 ~l~~~~~~~a~~~~~----~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~~E~~pe 151 (279)
T cd05312 77 DLTPFKKPFARKDEE----KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAK-SNERPIIFALSNPTSKAECTAE 151 (279)
T ss_pred cchHHHHHHHhhcCc----ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHh-cCCCCEEEECCCcCCccccCHH
Confidence 899999999998653 24579999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCc
Q 007939 456 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGI 535 (584)
Q Consensus 456 da~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~alA~~v~~~~~~~g~ 535 (584)
|||+||+|||||||||||+||+|+ ||+++||||||+|+|||||||+++++|++|||+||++||++||+++++++++.+.
T Consensus 152 ~a~~~t~G~ai~ATGsPf~pv~~~-Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~ 230 (279)
T cd05312 152 DAYKWTDGRALFASGSPFPPVEYN-GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGR 230 (279)
T ss_pred HHHHhhcCCEEEEeCCCCCCeeeC-CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCe
Confidence 999999999999999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccchHHHHHHHHHHHHHcCccCCCCCCChhHhhhhhcc
Q 007939 536 LYPSIDSIRDITAEVGAAVLRAAVEEDLAEGHGEVGPRDLKHMSKV 581 (584)
Q Consensus 536 l~P~~~~ir~vs~~VA~aVa~~A~~~g~A~~~~~~~~~~~~~~~~~ 581 (584)
|||+++++|+||.+||.||+++|+++|+|+..+ .+++++.+.+.
T Consensus 231 l~P~~~~~r~vs~~VA~aVa~~A~~~gla~~~~--~~~~~~~~i~~ 274 (279)
T cd05312 231 LYPPLSNIREISAQIAVAVAKYAYEEGLATRYP--PPEDLEEYVKS 274 (279)
T ss_pred eeCCCccHhHHHHHHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHh
Confidence 999999999999999999999999999998644 44666665543
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=2.8e-95 Score=731.39 Aligned_cols=255 Identities=48% Similarity=0.792 Sum_probs=230.2
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCC
Q 007939 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (584)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~ 375 (584)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+||||+||||+|++|||+++|+
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~G~~~~eA~~~i~lvD~~Gll~~~r~ 76 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSD---QRIVFFGAGSAGIGIARLLVAAMV-REGLSEEEARKRIWLVDSKGLLTDDRE 76 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG----EEEEEB-SHHHHHHHHHHHHHHH-CTTS-HHHHHTTEEEEETTEEEBTTTS
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHH---cEEEEeCCChhHHHHHHHHHHHHH-HhcCCHHHHhccEEEEeccceEeccCc
Confidence 8999999999999999999999999 999999999999999999999999 789999999999999999999999999
Q ss_pred CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHH
Q 007939 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 455 (584)
Q Consensus 376 ~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpe 455 (584)
+|+++|++|||+++++. ...+|+|+|+++|||||||+|+++|+|||||||+|++ +|||||||||||||+++|||||
T Consensus 77 ~l~~~~~~~a~~~~~~~---~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~-~~erPIIF~LSNPt~~aE~~pe 152 (255)
T PF03949_consen 77 DLNPHKKPFARKTNPEK---DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAK-HNERPIIFPLSNPTPKAECTPE 152 (255)
T ss_dssp SHSHHHHHHHBSSSTTT-----SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHH-HSSSEEEEE-SSSCGGSSS-HH
T ss_pred cCChhhhhhhccCcccc---cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhc-cCCCCEEEECCCCCCcccCCHH
Confidence 99999999999987642 2379999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCc
Q 007939 456 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGI 535 (584)
Q Consensus 456 da~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~alA~~v~~~~~~~g~ 535 (584)
|||+||+|+|||||||||+||+| +||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..++
T Consensus 153 da~~~t~g~ai~AtGSpf~pv~~-~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~ 231 (255)
T PF03949_consen 153 DAYEWTDGRAIFATGSPFPPVEY-NGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGR 231 (255)
T ss_dssp HHHHTTTSEEEEEESS----EEE-TSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTB
T ss_pred HHHhhCCceEEEecCCccCCeee-CCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCc
Confidence 99999999999999999999999 59999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccchHHHHHHHHHHHH
Q 007939 536 LYPSIDSIRDITAEVGAAVLRAAV 559 (584)
Q Consensus 536 l~P~~~~ir~vs~~VA~aVa~~A~ 559 (584)
|||+++++|+||.+||.||+++||
T Consensus 232 l~P~~~~ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 232 LYPPLFDIREVSARVAAAVAKQAI 255 (255)
T ss_dssp SS-SGGGHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcHhHHHHHHHHHHHHHhC
Confidence 999999999999999999999997
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=7.8e-92 Score=705.75 Aligned_cols=251 Identities=39% Similarity=0.663 Sum_probs=243.1
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCC
Q 007939 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (584)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~ 375 (584)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+||||+|||++|++|||+++|+
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~Gls~e~A~~~i~~vD~~Gll~~~r~ 76 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISE---HKVLFNGAGAAALGIANLIVXLXV-KEGISKEEACKRIWXVDRKGLLVKNRK 76 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-hcCCCHHHHhccEEEECCCCeEeCCCC
Confidence 7999999999999999999999999 999999999999999999999999 689999999999999999999999999
Q ss_pred CCChhhhc---cccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCC
Q 007939 376 NLDPAAAP---FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAEC 452 (584)
Q Consensus 376 ~l~~~k~~---fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~ 452 (584)
+|+++|++ |+++.. +..+|+|+|+.+|||||||+|+++|+||||+||+|++ +|+|||||||||||++|||
T Consensus 77 ~l~~~~~~~~~~~~~~~------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~aE~ 149 (254)
T cd00762 77 ETCPNEYHLARFANPER------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAE-INERPVIFALSNPTSKAEC 149 (254)
T ss_pred ccCHHHHHHHHHcCccc------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhh-cCCCCEEEECCCcCCcccc
Confidence 89999999 777643 3579999999999999999999999999999999975 9999999999999999999
Q ss_pred CHHHHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCC
Q 007939 453 TAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIP 532 (584)
Q Consensus 453 tpeda~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~alA~~v~~~~~~ 532 (584)
||||||+||+|||||||||||+||+|+ |++|+|+||||+|||||||||+++++|++|||+||++||++||+++++++++
T Consensus 150 tpe~a~~~t~G~ai~AtGspf~pv~~~-g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~ 228 (254)
T cd00762 150 TAEEAYTATEGRAIFASGSPFHPVELN-GGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLK 228 (254)
T ss_pred CHHHHHhhcCCCEEEEECCCCCCcccC-CceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCC
Confidence 999999999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCcccchHHHHHHHHHHH
Q 007939 533 KGILYPSIDSIRDITAEVGAAVLRAA 558 (584)
Q Consensus 533 ~g~l~P~~~~ir~vs~~VA~aVa~~A 558 (584)
.+.|||+++++|+||.+||.||+++|
T Consensus 229 ~~~i~P~~~~ir~vs~~VA~aVa~~a 254 (254)
T cd00762 229 PGRLYPPLFDIQEVSLNIAVAVAKYA 254 (254)
T ss_pred CCceeCCcchhhhHHHHHHHHHHHhC
Confidence 99999999999999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=2.7e-83 Score=615.55 Aligned_cols=181 Identities=61% Similarity=1.125 Sum_probs=163.1
Q ss_pred hhccceeEeeeeccCcccccceecccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCceeec
Q 007939 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILG 185 (584)
Q Consensus 106 ~~rNe~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~D~g~i~~~l~nwp~~~v~viVVTDG~rILG 185 (584)
|++||+|||+++.+|++|+||||||||||+||++||++||+|+|||+|++|+|+|+++|+|||.++||+|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccchhhhhhhhhcCCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHC-C
Q 007939 186 LGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-P 264 (584)
Q Consensus 186 LGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~-P 264 (584)
|||+|++|||||+||++|||+||||||++|||||||+||||++||+||+|+||||+|++|++|++|+||||+||+++| |
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CeeeEeccCCCChHHHHHHHHh
Q 007939 265 KAIVQFEDFQMKWAFETLERYR 286 (584)
Q Consensus 265 ~~lIqfEDf~~~nAf~lL~ryr 286 (584)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=2e-56 Score=443.02 Aligned_cols=225 Identities=32% Similarity=0.503 Sum_probs=206.1
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCC
Q 007939 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (584)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~ 375 (584)
+||||+|++||+++|+|.+|+++++ +||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~---~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~ 68 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEE---VKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGRE 68 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccC---CEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccc
Confidence 6999999999999999999999999 999999999999999999965 4776 579999999999999984
Q ss_pred -CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCH
Q 007939 376 -NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTA 454 (584)
Q Consensus 376 -~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tp 454 (584)
+|.++|++|+++... . ....+|.|++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||++ ||++
T Consensus 69 ~~L~~~~~~la~~~~~-~--~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~----~~~ivf~lsnP~~--e~~~ 136 (226)
T cd05311 69 DDLNPDKNEIAKETNP-E--KTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA----KDPIVFALANPVP--EIWP 136 (226)
T ss_pred hhhhHHHHHHHHHhcc-C--cccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC----CCCEEEEeCCCCC--cCCH
Confidence 599999999987431 1 111479899987 999999998 8999999999994 7999999999997 9999
Q ss_pred HHHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCC
Q 007939 455 ADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKG 534 (584)
Q Consensus 455 eda~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~alA~~v~~~~~~~g 534 (584)
++|++| |..||+|| +++.|+||||+|||||||||++++++++|||+||++||++||+++++++++.+
T Consensus 137 ~~A~~~--ga~i~a~G-----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~ 203 (226)
T cd05311 137 EEAKEA--GADIVATG-----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEE 203 (226)
T ss_pred HHHHHc--CCcEEEeC-----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCC
Confidence 999999 55599985 88999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccchHHHHHHHHHHH
Q 007939 535 ILYPSIDSIRDITAEVGAAVLRAA 558 (584)
Q Consensus 535 ~l~P~~~~ir~vs~~VA~aVa~~A 558 (584)
.|||++++ |+||..||.+|+++|
T Consensus 204 ~~~P~~~~-~~~~~~va~~v~~~a 226 (226)
T cd05311 204 YIIPTPFD-PRVVPRVATAVAKAA 226 (226)
T ss_pred cccCCCCc-hhHHHHHHHHHHHhC
Confidence 99999999 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.72 E-value=9.6e-08 Score=81.41 Aligned_cols=86 Identities=26% Similarity=0.367 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
+||.++++++..+.+..+.+++. .+++++|+|.+|.+++..+.+... ++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~---~~v~i~G~G~~g~~~a~~l~~~~~-----------~~v~v~~r----------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKG---KTVVVLGAGEVGKGIAKLLADEGG-----------KKVVLCDR----------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCC---CEEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcC-----------
Confidence 68999999999999999988888 999999999999999998877421 57888888
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007939 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (584)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLS 444 (584)
|+||++++.++.|+++.++.| ++.|+||.++
T Consensus 56 --------------------------------di~i~~~~~~~~~~~~~~~~~----~~~~~v~~~a 86 (86)
T cd05191 56 --------------------------------DILVTATPAGVPVLEEATAKI----NEGAVVIDLA 86 (86)
T ss_pred --------------------------------CEEEEcCCCCCCchHHHHHhc----CCCCEEEecC
Confidence 889999999999998855555 5799999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.67 E-value=0.0015 Score=71.69 Aligned_cols=120 Identities=21% Similarity=0.278 Sum_probs=82.0
Q ss_pred ccCccc----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhh
Q 007939 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (584)
Q Consensus 288 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA 357 (584)
.+|+|| |...||+--++-|+.. .++..+.. .+++|+|.|..|.++|..+... |.
T Consensus 173 ~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~G---k~VlViG~G~IG~~vA~~lr~~-----Ga----- 236 (425)
T PRK05476 173 KFPAINVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAG---KVVVVAGYGDVGKGCAQRLRGL-----GA----- 236 (425)
T ss_pred CCCEEecCCcccCccccccHHHHhhhHHHHHH---hccCCCCC---CEEEEECCCHHHHHHHHHHHhC-----CC-----
Confidence 389998 6678998777666653 34666677 9999999999999998887653 32
Q ss_pred cCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCC
Q 007939 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (584)
Q Consensus 358 ~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~er 437 (584)
+++++|.+- .+...|... + ....++.++++. .|++|-+++..+.|+.+.++.|. +.
T Consensus 237 --~ViV~d~dp-----------~ra~~A~~~----G-~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK----~G 292 (425)
T PRK05476 237 --RVIVTEVDP-----------ICALQAAMD----G-FRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK----DG 292 (425)
T ss_pred --EEEEEcCCc-----------hhhHHHHhc----C-CEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC----CC
Confidence 588888641 111111111 0 012358888875 89999888777889999999993 23
Q ss_pred CeEEecCCCC
Q 007939 438 PAIFAMSNPT 447 (584)
Q Consensus 438 PIIFaLSNPt 447 (584)
-|++-.+.+.
T Consensus 293 ailiNvG~~d 302 (425)
T PRK05476 293 AILANIGHFD 302 (425)
T ss_pred CEEEEcCCCC
Confidence 4555555444
No 16
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.39 E-value=0.0021 Score=70.38 Aligned_cols=130 Identities=19% Similarity=0.300 Sum_probs=92.9
Q ss_pred ccCccc----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhh
Q 007939 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (584)
Q Consensus 288 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA 357 (584)
.+|+|+ |.-.||+--++-+++. .++..+.. .+++|+|+|..|.++|..+... |.
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~G---ktVvViG~G~IG~~va~~ak~~-----Ga----- 226 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAG---KVAVVAGYGDVGKGCAQSLRGQ-----GA----- 226 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-----
Confidence 478774 6678999988877765 56777777 9999999999999998877653 32
Q ss_pred cCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCC
Q 007939 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (584)
Q Consensus 358 ~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~er 437 (584)
+++++|.+ +.+..+|+... ....++.|+++. .|++|-+++.+++|+.+.++.|. ..
T Consensus 227 --~ViV~d~d-----------~~R~~~A~~~G-----~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk----~G 282 (413)
T cd00401 227 --RVIVTEVD-----------PICALQAAMEG-----YEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK----DG 282 (413)
T ss_pred --EEEEEECC-----------hhhHHHHHhcC-----CEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC----CC
Confidence 47777753 22334444311 012346788876 79999999888899999999883 35
Q ss_pred CeEEecCCCCCccCCCHHHHhc
Q 007939 438 PAIFAMSNPTMNAECTAADAFK 459 (584)
Q Consensus 438 PIIFaLSNPt~~aE~tpeda~~ 459 (584)
-+|.-.+.+. .|+.+.+...
T Consensus 283 gilvnvG~~~--~eId~~~L~~ 302 (413)
T cd00401 283 AIVCNIGHFD--VEIDVKGLKE 302 (413)
T ss_pred cEEEEeCCCC--CccCHHHHHh
Confidence 5776667663 4888887665
No 17
>PLN02494 adenosylhomocysteinase
Probab=97.33 E-value=0.0058 Score=68.00 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=87.9
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccC
Q 007939 294 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (584)
Q Consensus 294 DDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~ 373 (584)
|...||+--++-|++ |.|+..+.. .+++|+|.|..|.++|..+... |. +++++|.+.
T Consensus 231 Dn~yGtgqS~~d~i~---r~t~i~LaG---KtVvViGyG~IGr~vA~~aka~-----Ga-------~VIV~e~dp----- 287 (477)
T PLN02494 231 DNLYGCRHSLPDGLM---RATDVMIAG---KVAVICGYGDVGKGCAAAMKAA-----GA-------RVIVTEIDP----- 287 (477)
T ss_pred hccccccccHHHHHH---HhcCCccCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCc-----
Confidence 446898888888877 467776777 9999999999999999988543 43 588777641
Q ss_pred CCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCC
Q 007939 374 RKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECT 453 (584)
Q Consensus 374 r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~t 453 (584)
.+...|+.. + ....++.|+++. .|++|=+++..++++++.++.|. +.-|+.-.+.+.. |+.
T Consensus 288 ------~r~~eA~~~----G-~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK----~GAiLiNvGr~~~--eID 348 (477)
T PLN02494 288 ------ICALQALME----G-YQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK----NNAIVCNIGHFDN--EID 348 (477)
T ss_pred ------hhhHHHHhc----C-CeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC----CCCEEEEcCCCCC--ccC
Confidence 111122211 0 011358888876 89999777767788999999993 4668887887655 777
Q ss_pred HHHHhcc
Q 007939 454 AADAFKH 460 (584)
Q Consensus 454 peda~~w 460 (584)
-++..++
T Consensus 349 ~~aL~~~ 355 (477)
T PLN02494 349 MLGLETY 355 (477)
T ss_pred HHHHhhc
Confidence 7666554
No 18
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.20 E-value=0.015 Score=64.86 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=80.9
Q ss_pred cCccccCcchhHHHH-------HHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcE
Q 007939 289 FCMFNDDIQGTAGVA-------LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (584)
Q Consensus 289 ~~~FNDDiQGTaaV~-------LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i 361 (584)
+|++|-+---|-.+. ++.+=+.+|.++..+.. .+++|+|.|..|.++|..+... |. ++
T Consensus 216 iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaG---KtVgVIG~G~IGr~vA~rL~a~-----Ga-------~V 280 (476)
T PTZ00075 216 FPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAG---KTVVVCGYGDVGKGCAQALRGF-----GA-------RV 280 (476)
T ss_pred ceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EE
Confidence 788875554443322 34445556777877777 9999999999999999988653 32 57
Q ss_pred EEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 362 ~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
+++|++-. +...|... + ....++.|+++. .|++|-+.+..+.|+++.++.|. +.-|+.
T Consensus 281 iV~e~dp~-----------~a~~A~~~----G-~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK----pGAiLI 338 (476)
T PTZ00075 281 VVTEIDPI-----------CALQAAME----G-YQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK----NNAIVG 338 (476)
T ss_pred EEEeCCch-----------hHHHHHhc----C-ceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC----CCcEEE
Confidence 77766411 00001110 0 012468888876 89999888778899999999994 455666
Q ss_pred ecCCCC
Q 007939 442 AMSNPT 447 (584)
Q Consensus 442 aLSNPt 447 (584)
-.+...
T Consensus 339 NvGr~d 344 (476)
T PTZ00075 339 NIGHFD 344 (476)
T ss_pred EcCCCc
Confidence 666554
No 19
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.02 E-value=0.0069 Score=66.25 Aligned_cols=128 Identities=22% Similarity=0.303 Sum_probs=86.2
Q ss_pred ccCccc----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhh
Q 007939 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (584)
Q Consensus 288 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA 357 (584)
.+|+|+ |.-.||+--++-+++ |.++..+.. .+++|+|.|..|.++|..+... |.
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~G---k~VvViG~G~IG~~vA~~ak~~-----Ga----- 219 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAG---KTVVVAGYGWCGKGIAMRARGM-----GA----- 219 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCc---CEEEEECCCHHHHHHHHHHhhC-----cC-----
Confidence 478886 667899987776655 456766777 9999999999999999877653 32
Q ss_pred cCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCC
Q 007939 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (584)
Q Consensus 358 ~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~er 437 (584)
+++++|.+- .+...|+.. | ....++.|+++. .|++|-+++..+.++++.+..|. +.
T Consensus 220 --~ViV~d~dp-----------~r~~~A~~~----G-~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK----~G 275 (406)
T TIGR00936 220 --RVIVTEVDP-----------IRALEAAMD----G-FRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK----DG 275 (406)
T ss_pred --EEEEEeCCh-----------hhHHHHHhc----C-CEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC----CC
Confidence 588887631 111122211 0 012357788875 89999888777888888888883 34
Q ss_pred CeEEecCCCCCccCCCHHHH
Q 007939 438 PAIFAMSNPTMNAECTAADA 457 (584)
Q Consensus 438 PIIFaLSNPt~~aE~tpeda 457 (584)
-||.-.+.... |+.-++.
T Consensus 276 ailiN~G~~~~--eId~~aL 293 (406)
T TIGR00936 276 AIVANIGHFDV--EIDVKAL 293 (406)
T ss_pred cEEEEECCCCc--eeCHHHH
Confidence 57766666643 5555444
No 20
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.65 E-value=0.013 Score=58.76 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCC
Q 007939 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~ 378 (584)
||-=+..++-.+++..+.+|+. .||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. +|+
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~--Gld 65 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEG---LTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP--GIT 65 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC--CCC
Confidence 5555667778888888887777 9999999999999999999774 33 468899999998887 565
Q ss_pred hhh-hccccccCCcCCcc--cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCH
Q 007939 379 PAA-APFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 454 (584)
Q Consensus 379 ~~k-~~fA~~~~~~~~~~--~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN-Pt~~aE~tp 454 (584)
..+ ..+.+........+ +..+- +.+..++.||||=++. .+..|++..+.+ ..++|.--+| |++. .+
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~DVlipaA~-~~~i~~~~a~~l-----~a~~V~e~AN~p~t~---~a 135 (217)
T cd05211 66 TEELINYAVALGGSARVKVQDYFPG-EAILGLDVDIFAPCAL-GNVIDLENAKKL-----KAKVVAEGANNPTTD---EA 135 (217)
T ss_pred HHHHHHHHHhhCCccccCcccccCc-ccceeccccEEeeccc-cCccChhhHhhc-----CccEEEeCCCCCCCH---HH
Confidence 532 22222111100000 11111 2344568999997775 789999999998 3789998888 8873 45
Q ss_pred HHHhc
Q 007939 455 ADAFK 459 (584)
Q Consensus 455 eda~~ 459 (584)
++.++
T Consensus 136 ~~~L~ 140 (217)
T cd05211 136 LRILH 140 (217)
T ss_pred HHHHH
Confidence 56555
No 21
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.35 E-value=0.013 Score=62.75 Aligned_cols=114 Identities=20% Similarity=0.257 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
|+++...++--+.+..|..+++ .+++|+|| |+.|--++++|... .|. ++++++++. ...+
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~---k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~------~~rl 194 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSK---ATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ------QERL 194 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCC---CEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC------HHHH
Confidence 6778888888888888888888 99999999 89999888888652 232 478888864 1123
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCC--CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV--FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~--Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
...+.++.+. +..++.+++.. +|+++=+++.+.. .+++.++ +.=+|+=++.|-.
T Consensus 195 ~~La~el~~~--------~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~-------~~~~viDiAvPRD 250 (340)
T PRK14982 195 QELQAELGGG--------KILSLEEALPE--ADIVVWVASMPKGVEIDPETLK-------KPCLMIDGGYPKN 250 (340)
T ss_pred HHHHHHhccc--------cHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC-------CCeEEEEecCCCC
Confidence 2222333211 12458888876 9999977776433 5665441 2335566899975
No 22
>PLN02477 glutamate dehydrogenase
Probab=96.32 E-value=0.11 Score=57.00 Aligned_cols=191 Identities=21% Similarity=0.244 Sum_probs=127.4
Q ss_pred CChhhhhHhHHHHHHHHHHHC-CCeeeEeccCCCChH--HHHHHHHhhc----------cCcc----ccCcchhHHHHHH
Q 007939 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKR----------FCMF----NDDIQGTAGVALA 305 (584)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nA--f~lL~ryr~~----------~~~F----NDDiQGTaaV~LA 305 (584)
.+..|-..|...|+.++.... |..-|-=+|++..-. --+.++|+.. -|+. .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 456788889999999998876 665566678876422 1245777651 1211 2333458888888
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEE-EEecCcccccCCCCCChhhh-c
Q 007939 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA-P 383 (584)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~-lvDs~GLi~~~r~~l~~~k~-~ 383 (584)
++-.+++..|.+|+. .||+|.|-|..|.++|++|.+. |. +|+ +.|++|-|+... .|+.... .
T Consensus 192 ~~~~~~~~~g~~l~g---~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~-GLD~~~L~~ 255 (410)
T PLN02477 192 ATEALLAEHGKSIAG---QTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN-GLDIPALRK 255 (410)
T ss_pred HHHHHHHHcCCCccC---CEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC-CCCHHHHHH
Confidence 888999998888888 9999999999999999988653 43 466 899999998865 3443221 1
Q ss_pred cccccCCcCCc--ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHHHhc
Q 007939 384 FAKDPGDFMGL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADAFK 459 (584)
Q Consensus 384 fA~~~~~~~~~--~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN-Pt~~aE~tpeda~~ 459 (584)
+.+......+. ....+-.|++. .+.||||=++ .++..|++.+..+ ...||.--+| |++ .| +++.++
T Consensus 256 ~k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i-----~ak~I~egAN~p~t-~e--a~~~L~ 324 (410)
T PLN02477 256 HVAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV-----KAKFIVEAANHPTD-PE--ADEILR 324 (410)
T ss_pred HHHhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc-----CCcEEEeCCCCCCC-HH--HHHHHH
Confidence 11111000000 01122334443 4899999766 5799999999987 4789999999 763 23 455555
No 23
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.32 E-value=0.018 Score=62.90 Aligned_cols=126 Identities=21% Similarity=0.308 Sum_probs=81.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCC
Q 007939 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (584)
Q Consensus 297 QGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~ 376 (584)
.+.-++..+++--|.+..+. +.+ .+++|+|+|..|..++..+... |. .+++++|+..
T Consensus 158 ~~~vSv~~~Av~la~~~~~~-l~~---~~VlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~rs~-------- 214 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS-LKG---KKALLIGAGEMGELVAKHLLRK-----GV------GKILIANRTY-------- 214 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECChHHHHHHHHHHHHC-----CC------CEEEEEeCCH--------
Confidence 55566666776666666553 555 8999999999999988877653 43 4799888741
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCC-eEEecCCCCCccCCCH
Q 007939 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKP-AIFAMSNPTMNAECTA 454 (584)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~-g~Fteevv~~M~~~~~erP-IIFaLSNPt~~aE~tp 454 (584)
+....+|+.-.. .. -...++.+++.. .|++|-+++.+ ..+++++++.+.. ...+| +|+=+++|.. +.|
T Consensus 215 --~ra~~la~~~g~-~~-i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~-~~~~~~~viDla~Prd---id~ 284 (417)
T TIGR01035 215 --ERAEDLAKELGG-EA-VKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALR-ERTRPLFIIDIAVPRD---VDP 284 (417)
T ss_pred --HHHHHHHHHcCC-eE-eeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHh-cCCCCeEEEEeCCCCC---CCh
Confidence 111223332110 00 012357788876 89999887644 5689999998742 11256 8999999984 555
Q ss_pred H
Q 007939 455 A 455 (584)
Q Consensus 455 e 455 (584)
+
T Consensus 285 ~ 285 (417)
T TIGR01035 285 A 285 (417)
T ss_pred h
Confidence 3
No 24
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.28 E-value=0.023 Score=59.46 Aligned_cols=138 Identities=20% Similarity=0.249 Sum_probs=84.5
Q ss_pred ChHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChh
Q 007939 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (584)
Q Consensus 276 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~e 355 (584)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|....|. +.. .+|+|+|+|..|..++..+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~---~~V~ViGaG~iG~~~a~~L~~~-----g~--- 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKG---KKVLVIGAGEMGELAAKHLAAK-----GV--- 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECcHHHHHHHHHHHHHc-----CC---
Confidence 46777777777664443 33445565555555555554 566 9999999999999888877652 32
Q ss_pred hhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCC
Q 007939 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDS 435 (584)
Q Consensus 356 eA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~ 435 (584)
++|+++|+. . +....+|+..... .....++.++++. .|++|-+++.+.. +++++.+.+...
T Consensus 203 ---~~V~v~~r~----~------~ra~~la~~~g~~--~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~ 263 (311)
T cd05213 203 ---AEITIANRT----Y------ERAEELAKELGGN--AVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRS 263 (311)
T ss_pred ---CEEEEEeCC----H------HHHHHHHHHcCCe--EEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCC
Confidence 579999873 1 1112333321100 0011357788876 8999988876555 676666533121
Q ss_pred -CCCeEEecCCCCC
Q 007939 436 -VKPAIFAMSNPTM 448 (584)
Q Consensus 436 -erPIIFaLSNPt~ 448 (584)
..-+|+=||||-.
T Consensus 264 ~~~~~viDlavPrd 277 (311)
T cd05213 264 GKPRLIVDLAVPRD 277 (311)
T ss_pred CCCeEEEEeCCCCC
Confidence 2337778999875
No 25
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.21 E-value=0.018 Score=60.14 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=99.3
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hc---cCccccCcc------hhHHHHHHHHHHHHHHhCC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KR---FCMFNDDIQ------GTAGVALAGLLGTVRAQGL 316 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~---~~~FNDDiQ------GTaaV~LAgll~Alr~~g~ 316 (584)
++|.+.+++.. |+ +.||.==-..-+..++++... +. +.+.| +-+ +.+-.|-.|++..++..+.
T Consensus 77 ~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n-~G~l~~~~~~~~p~T~~gii~~L~~~~i 155 (283)
T PRK14192 77 EQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLG-FGRMAMGEAAYGSATPAGIMRLLKAYNI 155 (283)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccc-cCccccCCCcccCCcHHHHHHHHHHcCC
Confidence 45556666554 33 466654322223333554441 22 33445 223 4577788999999999999
Q ss_pred CCCCCCCceEEEeCcch-hhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 317 SLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 317 ~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
+++. ++++++|+|- +|..||.+|... |. .+.+++++
T Consensus 156 ~l~G---k~vvViG~gg~vGkpia~~L~~~-----ga-------tVtv~~~~---------------------------- 192 (283)
T PRK14192 156 ELAG---KHAVVVGRSAILGKPMAMMLLNA-----NA-------TVTICHSR---------------------------- 192 (283)
T ss_pred CCCC---CEEEEECCcHHHHHHHHHHHHhC-----CC-------EEEEEeCC----------------------------
Confidence 9999 9999999997 999999988652 32 58888762
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEec-CCCCC--cc-CCCHHHHhc
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM-SNPTM--NA-ECTAADAFK 459 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaL-SNPt~--~a-E~tpeda~~ 459 (584)
..+|.+.++. .|++|-+.+.++.|+.++++. .-+|+=. .||.. .. ++.++++..
T Consensus 193 -t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk~-------gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 193 -TQNLPELVKQ--ADIIVGAVGKPELIKKDWIKQ-------GAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred -chhHHHHhcc--CCEEEEccCCCCcCCHHHcCC-------CCEEEEEEEeecCCCCcccccHHHhhc
Confidence 1247777775 999999999999999887653 3455544 36631 11 555555544
No 26
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.78 E-value=0.051 Score=52.70 Aligned_cols=88 Identities=16% Similarity=0.317 Sum_probs=64.7
Q ss_pred HHHHHHhCCCCCCCCCceEEEeCcch-hhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhcccc
Q 007939 308 LGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK 386 (584)
Q Consensus 308 l~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~ 386 (584)
+-.++....+|.+ .+++++|+|. .|..+|+.|... |. ++++++++
T Consensus 32 v~l~~~~~~~l~g---k~vlViG~G~~~G~~~a~~L~~~-----g~-------~V~v~~r~------------------- 77 (168)
T cd01080 32 LELLKRYGIDLAG---KKVVVVGRSNIVGKPLAALLLNR-----NA-------TVTVCHSK------------------- 77 (168)
T ss_pred HHHHHHcCCCCCC---CEEEEECCcHHHHHHHHHHHhhC-----CC-------EEEEEECC-------------------
Confidence 3344444556666 9999999997 588888887652 32 58888864
Q ss_pred ccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 387 DPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 387 ~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
. .+|.+.++. .|++|.+++.+..|+++.++ +.-+|+=|+.|-.
T Consensus 78 -~---------~~l~~~l~~--aDiVIsat~~~~ii~~~~~~-------~~~viIDla~prd 120 (168)
T cd01080 78 -T---------KNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK-------PGAVVIDVGINRV 120 (168)
T ss_pred -c---------hhHHHHHhh--CCEEEEcCCCCceecHHHcc-------CCeEEEEccCCCc
Confidence 0 137778887 99999999988899998654 2458888888864
No 27
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.75 E-value=0.055 Score=59.11 Aligned_cols=121 Identities=20% Similarity=0.278 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
+..+|+.+++--+.+..+ ++.. .+++|+|+|..|..++..+.. .|. ++|+++|+.. .
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~---~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~----~---- 217 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSG---KKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL----E---- 217 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccC---CEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH----H----
Confidence 355666665544444433 4556 899999999999998887754 343 4799888741 1
Q ss_pred ChhhhccccccC-CcCCcccCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcC-CCCCeEEecCCCCC
Q 007939 378 DPAAAPFAKDPG-DFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESD-SVKPAIFAMSNPTM 448 (584)
Q Consensus 378 ~~~k~~fA~~~~-~~~~~~~~~~L~evV~~vkptvLIG~S~~~-g~Fteevv~~M~~~~-~erPIIFaLSNPt~ 448 (584)
....+++... .. ....++.+++.. .|++|-+++.+ ..+++++++.+...- ....+|+=||+|-.
T Consensus 218 --ra~~la~~~g~~~---~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prd 284 (423)
T PRK00045 218 --RAEELAEEFGGEA---IPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRD 284 (423)
T ss_pred --HHHHHHHHcCCcE---eeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCC
Confidence 1122332210 00 012346777765 89999987755 578999999874211 12358889999984
No 28
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.72 E-value=0.076 Score=55.38 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=89.7
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCC
Q 007939 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (584)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~ 375 (584)
+..+-.++=.++.-+++..+..+.+ .+++|+|+|..|..+|+.+... |. +++++|++. +
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~g---k~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~------~ 185 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHG---SNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS------A 185 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCC---CEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH------H
Confidence 3455556555666777777888887 9999999999999999988653 42 588888741 0
Q ss_pred CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCH
Q 007939 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 454 (584)
Q Consensus 376 ~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN-Pt~~aE~tp 454 (584)
.+...+ .+ .... ....+|.+.++. .|++|=+. ..+.++++.++.|. +.-+|+=+|. |- ++..
T Consensus 186 ~~~~~~-~~--g~~~----~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k----~~aliIDlas~Pg---~tdf 248 (287)
T TIGR02853 186 DLARIT-EM--GLIP----FPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP----KHAVIIDLASKPG---GTDF 248 (287)
T ss_pred HHHHHH-HC--CCee----ecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC----CCeEEEEeCcCCC---CCCH
Confidence 111110 00 0000 012457788876 89999654 45678999999883 4567776654 53 5667
Q ss_pred HHHhcccCCcEEEEeCCC
Q 007939 455 ADAFKHAGENIVFASGSP 472 (584)
Q Consensus 455 eda~~wT~Grai~AsGSP 472 (584)
+.|-+ -.-+++.+-|-|
T Consensus 249 ~~Ak~-~G~~a~~~~glP 265 (287)
T TIGR02853 249 EYAKK-RGIKALLAPGLP 265 (287)
T ss_pred HHHHH-CCCEEEEeCCCC
Confidence 55544 345777787766
No 29
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.61 E-value=0.21 Score=48.64 Aligned_cols=121 Identities=23% Similarity=0.335 Sum_probs=75.7
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCC
Q 007939 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (584)
Q Consensus 297 QGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~ 376 (584)
.||+--++-|++ |.|+.-|.- .++|++|-|--|-|+|+.+..... ++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~G---k~vvV~GYG~vG~g~A~~lr~~Ga------------~V~V~e~D--------- 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAG---KRVVVIGYGKVGKGIARALRGLGA------------RVTVTEID--------- 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TT---SEEEEE--SHHHHHHHHHHHHTT-------------EEEEE-SS---------
T ss_pred cccchhHHHHHH---hcCceeeCC---CEEEEeCCCcccHHHHHHHhhCCC------------EEEEEECC---------
Confidence 577777777776 467888877 999999999999999999877533 67777653
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHH
Q 007939 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAAD 456 (584)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tped 456 (584)
|.+.-=|.- +| -+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ...|+.-+.
T Consensus 56 --Pi~alqA~~----dG-f~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk----dgail~n~Gh--~d~Eid~~~ 120 (162)
T PF00670_consen 56 --PIRALQAAM----DG-FEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK----DGAILANAGH--FDVEIDVDA 120 (162)
T ss_dssp --HHHHHHHHH----TT--EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS-----TTEEEEESSS--STTSBTHHH
T ss_pred --hHHHHHhhh----cC-cEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc----CCeEEeccCc--CceeEeecc
Confidence 222211211 11 123569999987 99999999988899999999993 3555554432 233777766
Q ss_pred Hhc
Q 007939 457 AFK 459 (584)
Q Consensus 457 a~~ 459 (584)
.-+
T Consensus 121 L~~ 123 (162)
T PF00670_consen 121 LEA 123 (162)
T ss_dssp HHT
T ss_pred ccc
Confidence 544
No 30
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.45 E-value=0.013 Score=54.05 Aligned_cols=105 Identities=19% Similarity=0.333 Sum_probs=64.1
Q ss_pred CCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCC
Q 007939 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (584)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~ 398 (584)
.+|.+.|++++|||.+|-+++..|... |. ++|+++++. .+| .......| ....+. .....
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r--a~~l~~~~--~~~~~~-~~~~~ 67 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER--AEALAEEF--GGVNIE-AIPLE 67 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH--HHHHHHHH--TGCSEE-EEEGG
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH--HHHHHHHc--Cccccc-eeeHH
Confidence 344559999999999888887777653 54 589999973 111 22222223 100000 01234
Q ss_pred CHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 399 SLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 399 ~L~evV~~vkptvLIG~S~~~-g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
++.+.+.. .|++|-+++.+ -.++++.++.... ...+||=||+|-.
T Consensus 68 ~~~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~---~~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 68 DLEEALQE--ADIVINATPSGMPIITEEMLKKASK---KLRLVIDLAVPRD 113 (135)
T ss_dssp GHCHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCH---HCSEEEES-SS-S
T ss_pred HHHHHHhh--CCeEEEecCCCCcccCHHHHHHHHh---hhhceeccccCCC
Confidence 56677776 89999888755 3788988876521 1249999999976
No 31
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.40 E-value=0.34 Score=53.88 Aligned_cols=194 Identities=18% Similarity=0.165 Sum_probs=129.0
Q ss_pred CChhhhhHhHHHHHHHHHHHC-CCeeeEeccCCCChH--HHHHHHHhhcc----------Ccc----ccCcchhHHHHHH
Q 007939 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKRF----------CMF----NDDIQGTAGVALA 305 (584)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nA--f~lL~ryr~~~----------~~F----NDDiQGTaaV~LA 305 (584)
.+..|-..|...|+.++.+.+ |..-|-=+|++..-. -=+.++|+.-. ++. .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 566788889999999999988 777888889884322 22567776431 211 1233467777888
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEE-ecCcccccCCCCCChhhh-c
Q 007939 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPAAA-P 383 (584)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lv-Ds~GLi~~~r~~l~~~k~-~ 383 (584)
++..+++..+.+|+. .||+|.|-|..|...|++|.. .|. +|+-+ |++|-|+... .|+..+. .
T Consensus 218 ~~~~~~~~~~~~l~g---~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~-GLD~~~L~~ 281 (445)
T PRK09414 218 FAEEMLKARGDSFEG---KRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE-GIDLEKLKE 281 (445)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC-CCCHHHHHH
Confidence 888999998888888 999999999999999999854 343 46655 9999998765 3443211 0
Q ss_pred ccccc----CCcCCc--ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHH
Q 007939 384 FAKDP----GDFMGL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAAD 456 (584)
Q Consensus 384 fA~~~----~~~~~~--~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN-Pt~~aE~tped 456 (584)
+.... ..+... ....+-. .+..++.||||=++. .+..|++-...+. .+...||.=-+| |++ .| +++
T Consensus 282 ~k~~~~~~l~~~~~~~~~~~i~~~-~i~~~d~DVliPaAl-~n~It~~~a~~i~--~~~akiIvEgAN~p~t-~~--A~~ 354 (445)
T PRK09414 282 IKEVRRGRISEYAEEFGAEYLEGG-SPWSVPCDIALPCAT-QNELDEEDAKTLI--ANGVKAVAEGANMPST-PE--AIE 354 (445)
T ss_pred HHHhcCCchhhhhhhcCCeecCCc-cccccCCcEEEecCC-cCcCCHHHHHHHH--HcCCeEEEcCCCCCCC-HH--HHH
Confidence 10000 000000 0011222 234568999997774 8999999999983 246789999998 763 22 445
Q ss_pred Hhc
Q 007939 457 AFK 459 (584)
Q Consensus 457 a~~ 459 (584)
.+.
T Consensus 355 ~L~ 357 (445)
T PRK09414 355 VFL 357 (445)
T ss_pred HHH
Confidence 554
No 32
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.29 E-value=0.47 Score=52.93 Aligned_cols=189 Identities=20% Similarity=0.202 Sum_probs=128.8
Q ss_pred CChhhhhHhHHHHHHHHHHHC-CCeeeEeccCCCChHHH---HHHHHhhc---c-Cccc----------cCcchhHHHHH
Q 007939 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWAFE---TLERYRKR---F-CMFN----------DDIQGTAGVAL 304 (584)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nAf~---lL~ryr~~---~-~~FN----------DDiQGTaaV~L 304 (584)
.+..|-..|...||..+.+.. |+.-|-=.|++. ++.. +.+.|+.- . .|+- +--..||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 566777889999999998876 888888889884 3332 45555532 1 1111 11224887788
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEE-EEecCcccccCCCCCChhhh-
Q 007939 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA- 382 (584)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~-lvDs~GLi~~~r~~l~~~k~- 382 (584)
.++-.+++..+.+|+. .|++|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~G---k~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~-Gld~~~l~ 285 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEG---KTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN-GFTKEKLA 285 (454)
T ss_pred HHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC-CCCHHHHH
Confidence 8888999999999999 9999999999999999988764 43 455 999999999865 4554332
Q ss_pred --------------ccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CC
Q 007939 383 --------------PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PT 447 (584)
Q Consensus 383 --------------~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN-Pt 447 (584)
.|+.... + ....+-.+ +-.++.|||+=+.+ .+..|++-++.+.+ +...+|.=-+| |+
T Consensus 286 ~l~~~k~~~~g~i~~~~~~~~---~-a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~--~~ak~V~EgAN~p~ 357 (454)
T PTZ00079 286 YLMDLKNVKRGRLKEYAKHSS---T-AKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIK--NGCKLVAEGANMPT 357 (454)
T ss_pred HHHHHHhhcCCcHHhhhhccC---C-cEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHH--cCCeEEEecCCCCC
Confidence 1211000 0 00001111 22368999998876 69999999998843 56779998998 77
Q ss_pred CccCCCHHHHhc
Q 007939 448 MNAECTAADAFK 459 (584)
Q Consensus 448 ~~aE~tpeda~~ 459 (584)
+. .+.+.++
T Consensus 358 t~---eA~~~L~ 366 (454)
T PTZ00079 358 TI---EATHLFK 366 (454)
T ss_pred CH---HHHHHHH
Confidence 63 2445554
No 33
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.16 E-value=0.14 Score=53.62 Aligned_cols=128 Identities=17% Similarity=0.212 Sum_probs=79.5
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccc
Q 007939 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 385 (584)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA 385 (584)
++..+++..+..+.. .|++|+|+|.+|..++..+... | -+++++|++- .+...+
T Consensus 138 av~~a~~~~~~~l~g---~kvlViG~G~iG~~~a~~L~~~-----G-------a~V~v~~r~~-----------~~~~~~ 191 (296)
T PRK08306 138 AIMMAIEHTPITIHG---SNVLVLGFGRTGMTLARTLKAL-----G-------ANVTVGARKS-----------AHLARI 191 (296)
T ss_pred HHHHHHHhCCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECCH-----------HHHHHH
Confidence 455677777777777 9999999999998888877653 4 2689898851 111222
Q ss_pred cccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCC-c
Q 007939 386 KDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE-N 464 (584)
Q Consensus 386 ~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~G-r 464 (584)
+.... . .....++.+.++. .|++|-++ ....++++.++.|. +.-+|+=++...- .|..+.|.+ .| +
T Consensus 192 ~~~G~-~-~~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~----~g~vIIDla~~pg--gtd~~~a~~--~Gv~ 258 (296)
T PRK08306 192 TEMGL-S-PFHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMP----PEALIIDLASKPG--GTDFEYAEK--RGIK 258 (296)
T ss_pred HHcCC-e-eecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCC----CCcEEEEEccCCC--CcCeeehhh--CCeE
Confidence 21100 0 0012357788876 99999865 45778999999984 4667775554332 344444333 33 3
Q ss_pred EEEEeCCC
Q 007939 465 IVFASGSP 472 (584)
Q Consensus 465 ai~AsGSP 472 (584)
++.++|-|
T Consensus 259 ~~~~~~lp 266 (296)
T PRK08306 259 ALLAPGLP 266 (296)
T ss_pred EEEECCCC
Confidence 44456644
No 34
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.98 E-value=0.66 Score=51.73 Aligned_cols=193 Identities=17% Similarity=0.151 Sum_probs=128.4
Q ss_pred CChhhhhHhHHHHHHHHHHHC-CCeeeEeccCCCChHHH---HHHHHhhc----cCcc----------ccCcchhHHHHH
Q 007939 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWAFE---TLERYRKR----FCMF----------NDDIQGTAGVAL 304 (584)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nAf~---lL~ryr~~----~~~F----------NDDiQGTaaV~L 304 (584)
.+..|...|.-.||+.+.+.. |+.-|-=.|++. ++.. +++.|++- ..++ .+--..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 456688889999999999654 888777888884 3322 55777652 1222 111223888888
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhc-
Q 007939 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP- 383 (584)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~- 383 (584)
.++-.+++..|.+|+. .||+|-|-|..|...|+.|.++ |. +=+-+-|++|-|++.. .|+..+..
T Consensus 213 ~~~~~~~~~~g~~l~g---~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~-Gld~~~l~~ 277 (445)
T PRK14030 213 YFVHQMLETKGIDIKG---KTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD-GISGEKIDY 277 (445)
T ss_pred HHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC-CCCHHHHHH
Confidence 8888999999988888 9999999999999999988664 44 3477789999998754 35543311
Q ss_pred ---cccccC--------CcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccC
Q 007939 384 ---FAKDPG--------DFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAE 451 (584)
Q Consensus 384 ---fA~~~~--------~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN-Pt~~aE 451 (584)
+-.... .+++. ...+-.+ +-.++.||||=+.. .+..|++-++.+. .+...||.=-+| |++
T Consensus 278 l~~~k~~~~~~~~~~~~~~~ga-~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~--~~~ak~V~EgAN~p~t--- 349 (445)
T PRK14030 278 MLELRASGNDIVAPYAEKFPGS-TFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLI--KNGVLCVAEVSNMGCT--- 349 (445)
T ss_pred HHHHHHhcCccHHHHHhcCCCC-EEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHH--HcCCeEEEeCCCCCCC---
Confidence 100000 00010 0011122 22468999997775 7999999999994 356889999999 543
Q ss_pred CCHHHHhc
Q 007939 452 CTAADAFK 459 (584)
Q Consensus 452 ~tpeda~~ 459 (584)
-.+++.++
T Consensus 350 ~eA~~iL~ 357 (445)
T PRK14030 350 AEAIDKFI 357 (445)
T ss_pred HHHHHHHH
Confidence 12445554
No 35
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.98 E-value=0.065 Score=56.34 Aligned_cols=140 Identities=18% Similarity=0.284 Sum_probs=95.8
Q ss_pred HHHHHHHHHHC--CCe---eeEeccCCCChHHHHHHHHh--hcc---------CccccCcchhHHHHHHHHHHHHHHhCC
Q 007939 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYR--KRF---------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (584)
Q Consensus 253 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr--~~~---------~~FNDDiQGTaaV~LAgll~Alr~~g~ 316 (584)
+||.+.++++- |++ ++|+==...-+..++++... +.+ ..|.++ .+-.-+|-+|++.-++..+.
T Consensus 76 ~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~ai~~ll~~~~i 154 (286)
T PRK14175 76 EEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDE-QTFVPCTPLGIMEILKHADI 154 (286)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcCC-CCCCCCcHHHHHHHHHHcCC
Confidence 56777777663 543 66654333334444444332 111 122222 34567788999999999999
Q ss_pred CCCCCCCceEEEeCcch-hhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 317 SLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 317 ~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
+|+. .+++++|+|. .|..+|.+|... | ..+++++++.
T Consensus 155 ~l~G---k~vvVIGrs~~VG~pla~lL~~~-----g-------atVtv~~s~t--------------------------- 192 (286)
T PRK14175 155 DLEG---KNAVVIGRSHIVGQPVSKLLLQK-----N-------ASVTILHSRS--------------------------- 192 (286)
T ss_pred CCCC---CEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCCc---------------------------
Confidence 9998 9999999988 999999988652 3 2578887641
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNP 446 (584)
.+|.+.+++ .|++|.+.+.++.|++++++ +.-+|+=++.|
T Consensus 193 --~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk-------~gavVIDvGi~ 232 (286)
T PRK14175 193 --KDMASYLKD--ADVIVSAVGKPGLVTKDVVK-------EGAVIIDVGNT 232 (286)
T ss_pred --hhHHHHHhh--CCEEEECCCCCcccCHHHcC-------CCcEEEEcCCC
Confidence 237788888 99999999999999998764 23466655543
No 36
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.96 E-value=0.19 Score=51.96 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEE-EEecCcccccCCCC
Q 007939 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKN 376 (584)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~-lvDs~GLi~~~r~~ 376 (584)
.||-=+.-++-.+++..+.+|+. .||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|+... .
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~-G 79 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKG---KRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD-G 79 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC-C
Confidence 46666777788888888988888 9999999999999999988763 43 455 999999998765 3
Q ss_pred CChhhhc--ccc---cc---CCc----CCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007939 377 LDPAAAP--FAK---DP---GDF----MGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (584)
Q Consensus 377 l~~~k~~--fA~---~~---~~~----~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLS 444 (584)
|+..+.. +.+ .. ... .+ ....+-.|.. ..+.||||=+. ..+..|++-+..+. .+...||.--+
T Consensus 80 ld~~~l~~l~~~~~~~~~~v~~~~~~~~~-a~~~~~~~~~-~~~~DIliPcA-l~~~I~~~na~~i~--~~~ak~I~EgA 154 (254)
T cd05313 80 FTGEKLAELKEIKEVRRGRVSEYAKKYGT-AKYFEGKKPW-EVPCDIAFPCA-TQNEVDAEDAKLLV--KNGCKYVAEGA 154 (254)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHhhcCCC-CEEeCCcchh-cCCCcEEEecc-ccccCCHHHHHHHH--HcCCEEEEeCC
Confidence 4422110 000 00 000 00 0111222322 45799999776 47999999999994 35688999999
Q ss_pred C-CCCccCCCHHHHhc
Q 007939 445 N-PTMNAECTAADAFK 459 (584)
Q Consensus 445 N-Pt~~aE~tpeda~~ 459 (584)
| |++. .+++.++
T Consensus 155 N~p~t~---~a~~~L~ 167 (254)
T cd05313 155 NMPCTA---EAIEVFR 167 (254)
T ss_pred CCCCCH---HHHHHHH
Confidence 9 8762 3445444
No 37
>PRK14031 glutamate dehydrogenase; Provisional
Probab=94.77 E-value=0.66 Score=51.72 Aligned_cols=186 Identities=16% Similarity=0.148 Sum_probs=124.1
Q ss_pred CChhhhhHhHHHHHHHHHHHC-CCeeeEeccCCCChH--HHHHHHHhhcc----Ccc----------ccCcchhHHHHHH
Q 007939 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKRF----CMF----------NDDIQGTAGVALA 305 (584)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~nA--f~lL~ryr~~~----~~F----------NDDiQGTaaV~LA 305 (584)
.+..|...|.-.||..+...+ |+.-|-=+|++..-. --+.+.|+... -+| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 566788899999999999877 888888889876322 23667775431 222 2334568888888
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccc
Q 007939 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 385 (584)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA 385 (584)
++-.+++..|.+|+. +||+|-|.|..|...|+.|.++ |. +=+-+-|++|-|++.. .|+..+..|-
T Consensus 214 ~~~~~~~~~g~~l~g---~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~-Gld~~~l~~~ 278 (444)
T PRK14031 214 FLMEMLKTKGTDLKG---KVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD-GIDREKLDYI 278 (444)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC-CCCHHHHHHH
Confidence 899999999998888 9999999999999999988764 43 2345699999888653 4665443321
Q ss_pred cc-----cCCcCCc-----ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CC
Q 007939 386 KD-----PGDFMGL-----REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PT 447 (584)
Q Consensus 386 ~~-----~~~~~~~-----~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN-Pt 447 (584)
+. ...+.+. ....+-.+ +-..+.||||=+.. .+..|++.++.+.+..+ -+|.--+| |+
T Consensus 279 ~~~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~g~--~~V~EgAN~P~ 347 (444)
T PRK14031 279 MELKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVANGV--IAVSEGANMPS 347 (444)
T ss_pred HHHHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhcCC--eEEECCCCCCC
Confidence 10 0000000 00011112 22357899997665 69999999999843112 37777787 54
No 38
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.74 E-value=0.15 Score=51.55 Aligned_cols=130 Identities=19% Similarity=0.312 Sum_probs=88.3
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCC
Q 007939 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (584)
Q Consensus 297 QGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~ 376 (584)
.-||-=+..++-.+++..+.+|+. .||+|.|-|..|.++|++|.+. |. +=+.+.|++|-+++.. .
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~---~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~-G 72 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAG---ARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD-G 72 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC-C
Confidence 457777778888888888877777 9999999999999999988763 43 2355999999988765 3
Q ss_pred CChhhh-ccccccCCcCCcc--cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 007939 377 LDPAAA-PFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (584)
Q Consensus 377 l~~~k~-~fA~~~~~~~~~~--~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN-Pt~ 448 (584)
|+.... .+.+......+.+ ...+-.+ +-..+.||||=++ .++..|++.+..+ ..++|.--+| |++
T Consensus 73 ld~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l-----~a~~I~egAN~~~t 141 (227)
T cd01076 73 LDVPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI-----KAKIIVEAANGPTT 141 (227)
T ss_pred CCHHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc-----eeeEEEeCCCCCCC
Confidence 433221 1111110000000 0112233 3345899999877 5899999999998 3789999999 553
No 39
>PLN00203 glutamyl-tRNA reductase
Probab=94.29 E-value=0.17 Score=57.31 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHhCC-CCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 299 TAGVALAGLLGTVRAQGL-SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~-~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
--+|.-+++=-|.++.|. +|.+ .+|+|+|||..|..++..+.. .|. ++|+++++.. ++ .
T Consensus 244 ~vSv~s~Av~la~~~~~~~~l~~---kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs~----er--a 303 (519)
T PLN00203 244 AVSVSSAAVELALMKLPESSHAS---ARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRSE----ER--V 303 (519)
T ss_pred CcCHHHHHHHHHHHhcCCCCCCC---CEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCCH----HH--H
Confidence 334444455555555553 4667 999999999998888776653 353 5799988741 11 1
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhc--CCCCC-eEEecCCCCC
Q 007939 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRES--DSVKP-AIFAMSNPTM 448 (584)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~-g~Fteevv~~M~~~--~~erP-IIFaLSNPt~ 448 (584)
......|-...-.+ ....++.+++.. .|++|.+++.+ ..+++++++.|-.. ...+| +|+=||.|-.
T Consensus 304 ~~La~~~~g~~i~~---~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 304 AALREEFPDVEIIY---KPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred HHHHHHhCCCceEe---ecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 11111220000000 112457788876 89999876543 57999999997320 11244 5667999974
No 40
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.24 E-value=0.059 Score=53.39 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=67.2
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
.+|++ .||+|+|+|..|.+||..|+.+ |+ +++.++|.+=+ . ..+|..+ . |... +. +..
T Consensus 17 ~~L~~---~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e--~sNL~Rq-~-~~~~--~i-G~~ 74 (200)
T TIGR02354 17 QKLEQ---ATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-E--PSNLNRQ-Q-YKAS--QV-GEP 74 (200)
T ss_pred HHHhC---CcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-c--ccccccc-c-CChh--hC-CCH
Confidence 34566 9999999999999999999775 44 58999999722 2 1245542 2 2111 11 111
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE-ecCCCCCccCCC
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF-AMSNPTMNAECT 453 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF-aLSNPt~~aE~t 453 (584)
....+.+.++.+.|++-|-. ...-++++-+...- .+--+|+ +.-||..+.+..
T Consensus 75 Ka~~~~~~l~~inp~~~i~~--~~~~i~~~~~~~~~---~~~DlVi~a~Dn~~~k~~l~ 128 (200)
T TIGR02354 75 KTEALKENISEINPYTEIEA--YDEKITEENIDKFF---KDADIVCEAFDNAEAKAMLV 128 (200)
T ss_pred HHHHHHHHHHHHCCCCEEEE--eeeeCCHhHHHHHh---cCCCEEEECCCCHHHHHHHH
Confidence 12336777888888865432 34556777666542 2334555 556777655443
No 41
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.05 E-value=0.34 Score=47.91 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHHHHh--CCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCC
Q 007939 298 GTAGVALAGLLGTVRAQ--GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (584)
Q Consensus 298 GTaaV~LAgll~Alr~~--g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~ 375 (584)
.||-=+..++-.+++.. +.+++. .+|+|.|.|..|..+|+.|.+. |. +++++|++. +
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~g---k~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~------~ 62 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEG---KTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE------E 62 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH------H
Confidence 35656666777777775 777887 9999999999999999888764 42 588888651 1
Q ss_pred CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCH
Q 007939 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 454 (584)
Q Consensus 376 ~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN-Pt~~aE~tp 454 (584)
.+..++..|. . ...+..+... .+.|+++=++. .+..|++.++.| ..++|..-+| |+. +..+
T Consensus 63 ~~~~~~~~~g---~------~~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l-----~~~~v~~~AN~~~~--~~~~ 124 (200)
T cd01075 63 AVARAAELFG---A------TVVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQL-----KAKAIAGAANNQLA--DPRH 124 (200)
T ss_pred HHHHHHHHcC---C------EEEcchhhcc-ccCCEEEeccc-ccccCHHHHHHc-----CCCEEEECCcCccC--CHhH
Confidence 1222222221 0 0112233333 36999996654 789999999999 3678998888 665 2334
Q ss_pred HHHhc
Q 007939 455 ADAFK 459 (584)
Q Consensus 455 eda~~ 459 (584)
++.++
T Consensus 125 ~~~L~ 129 (200)
T cd01075 125 GQMLH 129 (200)
T ss_pred HHHHH
Confidence 45544
No 42
>PLN00106 malate dehydrogenase
Probab=93.79 E-value=0.37 Score=51.37 Aligned_cols=133 Identities=19% Similarity=0.179 Sum_probs=82.7
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhh
Q 007939 305 AGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAA 382 (584)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~ 382 (584)
|.-|.|+|..|..-.. ||+|+|| |..|.-+|..|.. .|+- ..+.|+|.+- .++. -+|.+...
T Consensus 4 ~~~~~~~~~~~~~~~~----KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~el~L~Di~~--~~g~a~Dl~~~~~ 67 (323)
T PLN00106 4 ASSLRACRAKGGAPGF----KVAVLGAAGGIGQPLSLLMKM-----NPLV-----SELHLYDIAN--TPGVAADVSHINT 67 (323)
T ss_pred hhhhhccccccCCCCC----EEEEECCCCHHHHHHHHHHHh-----CCCC-----CEEEEEecCC--CCeeEchhhhCCc
Confidence 4557788888876554 9999999 9999988887754 2432 4799999864 1111 13332211
Q ss_pred ccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 383 PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 383 ~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~--------------Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
+.+-. +..+..++.+++++ .|+.|=+.+.+.. ..+++++.+.+ ++.+.||+..|||..
T Consensus 68 -~~~i~----~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~-~~p~aivivvSNPvD 139 (323)
T PLN00106 68 -PAQVR----GFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAK-HCPNALVNIISNPVN 139 (323)
T ss_pred -CceEE----EEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCCcc
Confidence 11110 00123568889988 8888766654321 23566777754 889999999999995
Q ss_pred -ccCCCHHHHhccc
Q 007939 449 -NAECTAADAFKHA 461 (584)
Q Consensus 449 -~aE~tpeda~~wT 461 (584)
.+.+....+.+++
T Consensus 140 ~~~~i~t~~~~~~s 153 (323)
T PLN00106 140 STVPIAAEVLKKAG 153 (323)
T ss_pred ccHHHHHHHHHHcC
Confidence 2224444444543
No 43
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.76 E-value=0.56 Score=49.44 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=91.0
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hccCccccCcc--------hhHHHHHHHHHHHHHHhCCC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDIQ--------GTAGVALAGLLGTVRAQGLS 317 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDiQ--------GTaaV~LAgll~Alr~~g~~ 317 (584)
+||.+.++++- |+ .++|+==.+.-|..++++... +.+=.||..-. +-.-+|-+|++.=++..+.+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~ 154 (285)
T PRK14191 75 AELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQLDGFVPATPMGVMRLLKHYHIE 154 (285)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCCCcHHHHHHHHHHhCCC
Confidence 67778888775 54 377764333344444544332 22323333322 23457888899999999999
Q ss_pred CCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
++. ++++++|.| ..|.-+|.++... |. .+.+++++
T Consensus 155 l~G---k~vvVvGrs~~VG~Pla~lL~~~-----gA-------tVtv~hs~----------------------------- 190 (285)
T PRK14191 155 IKG---KDVVIIGASNIVGKPLAMLMLNA-----GA-------SVSVCHIL----------------------------- 190 (285)
T ss_pred CCC---CEEEEECCCchhHHHHHHHHHHC-----CC-------EEEEEeCC-----------------------------
Confidence 988 999999999 9999999988652 42 36666442
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~ 428 (584)
..+|.+.+++ +|++|.+.+.++.+++++|+
T Consensus 191 t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1347788888 99999999999999999885
No 44
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=93.75 E-value=0.15 Score=54.80 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=68.6
Q ss_pred ChHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChh
Q 007939 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (584)
Q Consensus 276 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~e 355 (584)
..||+.=.|-|.+.- =|.++|.++.+ |..... .+.+|.+.+++++|||..|--+|+.|.+ .|.
T Consensus 136 ~~A~~~aKrVRteT~------I~~~~vSv~s~--av~~~~-~~~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~--- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG------APYAEVTIESV--VQQELR-RRQKSKKASLLFIGYSEINRKVAYYLQR-----QGY--- 198 (338)
T ss_pred HHHHHHHHHHhhhcC------CCCCCcCHHHH--HHHHHH-HhCCccCCEEEEEcccHHHHHHHHHHHH-----cCC---
Confidence 355555555555421 13444444443 222221 1233444999999999988666665554 455
Q ss_pred hhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHhh
Q 007939 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMR 431 (584)
Q Consensus 356 eA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S----~~~g~Fteevv~~M~ 431 (584)
++|+++++.-- ..+|.... ....+.. .+.||+|-.| ++.-..+.+.++..
T Consensus 199 ---~~i~v~nRt~~-----------~~~~~~~~---------~~~~~~~--~~~DvVIs~t~~Tas~~p~i~~~~~~~~- 252 (338)
T PRK00676 199 ---SRITFCSRQQL-----------TLPYRTVV---------REELSFQ--DPYDVIFFGSSESAYAFPHLSWESLADI- 252 (338)
T ss_pred ---CEEEEEcCCcc-----------ccchhhhh---------hhhhhcc--cCCCEEEEcCCcCCCCCceeeHHHHhhc-
Confidence 57999988631 12232110 0001111 3589999643 33345666665542
Q ss_pred hcCCCCCeEEecCCCCC
Q 007939 432 ESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 432 ~~~~erPIIFaLSNPt~ 448 (584)
-+| ++|=||+|-.
T Consensus 253 ---~~r-~~iDLAvPRd 265 (338)
T PRK00676 253 ---PDR-IVFDFNVPRT 265 (338)
T ss_pred ---cCc-EEEEecCCCC
Confidence 224 9999999987
No 45
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.74 E-value=0.17 Score=55.80 Aligned_cols=215 Identities=22% Similarity=0.284 Sum_probs=119.3
Q ss_pred ChHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChh
Q 007939 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (584)
Q Consensus 276 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~e 355 (584)
..||..=.|.|.+--. -.|--+|.-|++=-|-++.|. |++ .+++|+|||..|-.+|..|... |+
T Consensus 139 qkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~-L~~---~~vlvIGAGem~~lva~~L~~~-----g~--- 202 (414)
T COG0373 139 QKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFGS-LKD---KKVLVIGAGEMGELVAKHLAEK-----GV--- 202 (414)
T ss_pred HHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhcc-ccc---CeEEEEcccHHHHHHHHHHHhC-----CC---
Confidence 4677777777765210 123333444444445555543 555 9999999999998888887764 44
Q ss_pred hhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecC-CCCCCCHHHHHHhhhcC
Q 007939 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG-VGGVFNEEVLKAMRESD 434 (584)
Q Consensus 356 eA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~-~~g~Fteevv~~M~~~~ 434 (584)
++|+++++. ..| -+.+|+.-.- . ......|.+.+.. .||+|-.++ +.-.++.+.++.-.+
T Consensus 203 ---~~i~IaNRT----~er------A~~La~~~~~-~-~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~-- 263 (414)
T COG0373 203 ---KKITIANRT----LER------AEELAKKLGA-E-AVALEELLEALAE--ADVVISSTSAPHPIITREMVERALK-- 263 (414)
T ss_pred ---CEEEEEcCC----HHH------HHHHHHHhCC-e-eecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHh--
Confidence 589988872 221 1233332110 0 0112456777766 899875544 446788888876532
Q ss_pred CCCC-eEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhHHHHHHhCCcccCHH
Q 007939 435 SVKP-AIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDG 513 (584)
Q Consensus 435 ~erP-IIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~ 513 (584)
..+. +||=|+||-. +.+. .+.-+|+++|-==-|-.+.-.-..-..+
T Consensus 264 ~r~~~livDiavPRd---------ie~~------------------------v~~l~~v~l~~iDDL~~iv~~n~~~R~~ 310 (414)
T COG0373 264 IRKRLLIVDIAVPRD---------VEPE------------------------VGELPNVFLYTIDDLEEIVEENLEARKE 310 (414)
T ss_pred cccCeEEEEecCCCC---------CCcc------------------------ccCcCCeEEEehhhHHHHHHHhHHHHHH
Confidence 3334 9999999986 2221 1122344444322333332221111112
Q ss_pred HHHHHHHHH-----hccCCCCCCCCCccccCCCCcccchHHHHHHHHHHHHHc
Q 007939 514 MLQQAAECL-----ASYMTDEEIPKGILYPSIDSIRDITAEVGAAVLRAAVEE 561 (584)
Q Consensus 514 m~~aAA~al-----A~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~ 561 (584)
.. ++|++| +++.. .+..-.+-|.+.++|+-+..|...-.+.|.+.
T Consensus 311 ~~-~~ae~iIeee~~~~~~--~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~ 360 (414)
T COG0373 311 EA-AKAEAIIEEELAEFME--WLKKLEVVPTIRALREQAEDVREEELEKALKK 360 (414)
T ss_pred HH-HHHHHHHHHHHHHHHH--HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 122221 22211 23455678899999888888888888777754
No 46
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.57 E-value=0.55 Score=44.44 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChh
Q 007939 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA 380 (584)
Q Consensus 301 aV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~ 380 (584)
-+|..|++.-++..|.+++. ++++++|.+.. +++-+...+. ++|. .+..+|++
T Consensus 9 p~t~~a~~~ll~~~~~~~~g---k~v~VvGrs~~---vG~pla~lL~-~~ga-------tV~~~~~~------------- 61 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDG---KKVLVVGRSGI---VGAPLQCLLQ-RDGA-------TVYSCDWK------------- 61 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCC---CEEEEECCCch---HHHHHHHHHH-HCCC-------EEEEeCCC-------------
Confidence 35788899999999999988 99999998643 3444444444 3453 46777763
Q ss_pred hhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 381 AAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 381 k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
.++|.|.++. .|++|-+.+.++.|+.|+||.
T Consensus 62 ----------------t~~l~~~v~~--ADIVvsAtg~~~~i~~~~ikp 92 (140)
T cd05212 62 ----------------TIQLQSKVHD--ADVVVVGSPKPEKVPTEWIKP 92 (140)
T ss_pred ----------------CcCHHHHHhh--CCEEEEecCCCCccCHHHcCC
Confidence 1358888988 999999999999999999884
No 47
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.08 E-value=0.1 Score=57.34 Aligned_cols=97 Identities=14% Similarity=0.273 Sum_probs=60.1
Q ss_pred CCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCH
Q 007939 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (584)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L 400 (584)
|++.|++|+|||.+|-.+|..|.. .|. ++|+++++. .++ -+.++..-.... .....+|
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~r------a~~La~~~~~~~-~~~~~~l 236 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEK------AQKITSAFRNAS-AHYLSEL 236 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHH------HHHHHHHhcCCe-EecHHHH
Confidence 444999999999998777777644 454 479988884 111 122332110000 0112457
Q ss_pred HHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCe-EEecCCCCC
Q 007939 401 LEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPA-IFAMSNPTM 448 (584)
Q Consensus 401 ~evV~~vkptvLIG~S~~~-g~Fteevv~~M~~~~~erPI-IFaLSNPt~ 448 (584)
.+++.. .|++|-+++.| -++|.+.++ .+|+ |+=|++|-.
T Consensus 237 ~~~l~~--aDiVI~aT~a~~~vi~~~~~~-------~~~~~~iDLavPRd 277 (414)
T PRK13940 237 PQLIKK--ADIIIAAVNVLEYIVTCKYVG-------DKPRVFIDISIPQA 277 (414)
T ss_pred HHHhcc--CCEEEECcCCCCeeECHHHhC-------CCCeEEEEeCCCCC
Confidence 777876 99999887765 457765432 3565 467999975
No 48
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=92.98 E-value=0.14 Score=56.33 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=76.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHc-CCChhhhcCcEEEEecCcccccCCC-CCChhhhccccc-cCCcCCcccCCCH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMA-GNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKD-PGDFMGLREGASL 400 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~-Gls~eeA~~~i~lvDs~GLi~~~r~-~l~~~k~~fA~~-~~~~~~~~~~~~L 400 (584)
.||+|+||||+ -+-.|+..+.... .++. +.|||+|-+ .+|- .+...-+.+++. ..++. .....++
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~~----~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~-v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELPI----SEVTLYDID----EERLDIILTIAKRYVEEVGADIK-FEKTMDL 68 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCCC----CEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCH
Confidence 38999999995 4444444444222 4442 689999964 2331 111111222222 11111 1235779
Q ss_pred HHHhcccCCcEEEee--------------------------cCCCCCCC--------HHHHHHhhhcCCCCCeEEecCCC
Q 007939 401 LEVVRKVKPHVLLGL--------------------------SGVGGVFN--------EEVLKAMRESDSVKPAIFAMSNP 446 (584)
Q Consensus 401 ~evV~~vkptvLIG~--------------------------S~~~g~Ft--------eevv~~M~~~~~erPIIFaLSNP 446 (584)
.||++. +|..|-. -|.+|.|. .++++.|. ++|+.-+|+-.|||
T Consensus 69 ~~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~-~~~P~a~lin~TNP 145 (425)
T cd05197 69 EDAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXE-KLSPDAWYLNFTNP 145 (425)
T ss_pred HHHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHH-HhCCCcEEEecCCh
Confidence 999988 7877711 22234333 38888885 49999999999999
Q ss_pred CCccCCCHHHHhcccCCcEEEEeC
Q 007939 447 TMNAECTAADAFKHAGENIVFASG 470 (584)
Q Consensus 447 t~~aE~tpeda~~wT~Grai~AsG 470 (584)
.. +.-+-+++++...-+|.+|
T Consensus 146 ~d---i~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 146 AG---EVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred HH---HHHHHHHHhCCCCcEEEEC
Confidence 95 4455556667444455655
No 49
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.78 E-value=0.34 Score=52.27 Aligned_cols=98 Identities=17% Similarity=0.294 Sum_probs=62.0
Q ss_pred CCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHH
Q 007939 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (584)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ 401 (584)
...+++|+|+|.+|.++++.+... |. ++.++|++- . .+......|...... ...+...|.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~~----~--~~~~l~~~~g~~v~~--~~~~~~~l~ 225 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDINI----D--RLRQLDAEFGGRIHT--RYSNAYEIE 225 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECCH----H--HHHHHHHhcCceeEe--ccCCHHHHH
Confidence 348999999999999998888653 32 488898741 1 111111122211000 001124588
Q ss_pred HHhcccCCcEEEeecCC-----CCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007939 402 EVVRKVKPHVLLGLSGV-----GGVFNEEVLKAMRESDSVKPAIFAMSN 445 (584)
Q Consensus 402 evV~~vkptvLIG~S~~-----~g~Fteevv~~M~~~~~erPIIFaLSN 445 (584)
+.++. .|++|.+... +..+|++.++.|. +..+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk----~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK----PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC----CCCEEEEEec
Confidence 88876 8999987532 4568999999993 4678887773
No 50
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.55 E-value=0.91 Score=46.76 Aligned_cols=195 Identities=13% Similarity=0.131 Sum_probs=97.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccc-cCCCCCChhhhccccccCC---------cCC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT-KERKNLDPAAAPFAKDPGD---------FMG 393 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~-~~r~~l~~~k~~fA~~~~~---------~~~ 393 (584)
.+|.|+|+|..|.+||..+... |. +++++|.+---. +.++.+......+.+...- ...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----GF-------DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcC
Confidence 5899999999999999887553 43 689998641100 0000010001111100000 000
Q ss_pred cccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCC
Q 007939 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPF 473 (584)
Q Consensus 394 ~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf 473 (584)
.....++.++++. .|++|=+-...-.+.+++++...+ ......|+ .||.+++ .+.++.+...-..=|....||
T Consensus 72 i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r~vg~Hf~ 144 (287)
T PRK08293 72 ITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAK-VAPEKTIF-ATNSSTL---LPSQFAEATGRPEKFLALHFA 144 (287)
T ss_pred eEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHh-hCCCCCEE-EECcccC---CHHHHHhhcCCcccEEEEcCC
Confidence 1123678899887 888875432112356677777643 44444455 3565553 444444433211113335788
Q ss_pred CccccCCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCCCCCCCCc-cc-cCCCCcccchHHHH
Q 007939 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTDEEIPKGI-LY-PSIDSIRDITAEVG 551 (584)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~alA~~v~~~~~~~g~-l~-P~~~~ir~vs~~VA 551 (584)
.|+... + ..-| +....-+++.+. .+..+...+- +.. ++ |... -.|..++-
T Consensus 145 ~p~~~~--~--------lvev----------v~~~~t~~~~~~-~~~~~~~~~G-----k~pv~v~~d~p--gfi~nRi~ 196 (287)
T PRK08293 145 NEIWKN--N--------TAEI----------MGHPGTDPEVFD-TVVAFAKAIG-----MVPIVLKKEQP--GYILNSLL 196 (287)
T ss_pred CCCCcC--C--------eEEE----------eCCCCCCHHHHH-HHHHHHHHcC-----CeEEEecCCCC--CHhHHHHH
Confidence 887542 2 1112 222333555444 4455554432 222 22 2232 34666777
Q ss_pred HHHHHHHH---HcCccC
Q 007939 552 AAVLRAAV---EEDLAE 565 (584)
Q Consensus 552 ~aVa~~A~---~~g~A~ 565 (584)
.++...|+ ++|+|+
T Consensus 197 ~~~~~ea~~l~~~g~a~ 213 (287)
T PRK08293 197 VPFLSAALALWAKGVAD 213 (287)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77766665 588875
No 51
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.14 E-value=0.43 Score=50.35 Aligned_cols=84 Identities=14% Similarity=0.250 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-hhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
-.-+|-.|++..++..+.+++. .+++++|.+. -|.-+|.+|... | ..+.+++++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~-------atVtv~hs~---------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEG---KNAVIVGHSNVVGKPMAAMLLNR-----N-------ATVSVCHVF---------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHHC-----C-------CEEEEEecc----------
Confidence 4567889999999999999988 9999999988 899999888652 3 246777752
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007939 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (584)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~ 428 (584)
..+|.+.+++ +|++|-+.|.|+.+++++|+
T Consensus 198 -------------------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -------------------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1348888887 99999999999999999776
No 52
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.11 E-value=0.22 Score=51.78 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.|++.+++..+..++. ++++++|||.||..++..+... |. ++|+++|+.
T Consensus 112 ~G~~~~l~~~~~~~~~---k~vlIlGaGGaaraia~aL~~~-----G~------~~I~I~nR~ 160 (284)
T PRK12549 112 SGFAESFRRGLPDASL---ERVVQLGAGGAGAAVAHALLTL-----GV------ERLTIFDVD 160 (284)
T ss_pred HHHHHHHHhhccCccC---CEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 3477788765555666 9999999999998888877653 54 579999984
No 53
>PRK08328 hypothetical protein; Provisional
Probab=92.04 E-value=0.075 Score=53.60 Aligned_cols=124 Identities=23% Similarity=0.296 Sum_probs=74.3
Q ss_pred HHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcE
Q 007939 282 LERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (584)
Q Consensus 282 L~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i 361 (584)
++||..++..|..+.| .+|++ .||+++|+|..|.-+|..|+.+ |+ ++|
T Consensus 7 ~~ry~Rq~~~~g~~~q------------------~~L~~---~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i 54 (231)
T PRK08328 7 LERYDRQIMIFGVEGQ------------------EKLKK---AKVAVVGVGGLGSPVAYYLAAA-----GV------GRI 54 (231)
T ss_pred HHHHhhHHHhcCHHHH------------------HHHhC---CcEEEECCCHHHHHHHHHHHHc-----CC------CEE
Confidence 5788877766665322 44566 8999999999999999998776 44 689
Q ss_pred EEEecCcccccCCCCCChhhhccccccCCcCCcc-cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeE
Q 007939 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR-EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAI 440 (584)
Q Consensus 362 ~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~-~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPII 440 (584)
.++|.+= +. ..+|..+ .+... .+. |.. ......+.++...|++.|=.. .+.++++-+...- .+.-+|
T Consensus 55 ~lvD~D~-ve--~sNL~Rq--~l~~~-~dv-G~~~k~~~a~~~l~~~np~v~v~~~--~~~~~~~~~~~~l---~~~D~V 122 (231)
T PRK08328 55 LLIDEQT-PE--LSNLNRQ--ILHWE-EDL-GKNPKPLSAKWKLERFNSDIKIETF--VGRLSEENIDEVL---KGVDVI 122 (231)
T ss_pred EEEcCCc-cC--hhhhccc--cccCh-hhc-CchHHHHHHHHHHHHhCCCCEEEEE--eccCCHHHHHHHH---hcCCEE
Confidence 9999861 11 1234431 11111 111 100 001234556777899887654 3556776655542 245677
Q ss_pred E-ecCCCCCc
Q 007939 441 F-AMSNPTMN 449 (584)
Q Consensus 441 F-aLSNPt~~ 449 (584)
| +.-|+.++
T Consensus 123 id~~d~~~~r 132 (231)
T PRK08328 123 VDCLDNFETR 132 (231)
T ss_pred EECCCCHHHH
Confidence 7 45676553
No 54
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.01 E-value=0.37 Score=46.59 Aligned_cols=54 Identities=26% Similarity=0.410 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
|++.+++.+..+++..|..+++ .+++++|+ |..|..++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~---~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKG---KTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCC---CEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 7778888888888888888888 99999997 9888777776654 23 368888764
No 55
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=91.96 E-value=0.19 Score=51.54 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=88.1
Q ss_pred CcchhHHHHHHHHHHHHHHhCCC-CCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccC
Q 007939 295 DIQGTAGVALAGLLGTVRAQGLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (584)
Q Consensus 295 DiQGTaaV~LAgll~Alr~~g~~-l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~ 373 (584)
--+-||-=+..++-.+++..+.. ++. .|++|-|.|..|...|+.+.+. |. +=+-+.|++|.|++.
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g---~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~ 71 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEG---KRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDP 71 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTT---CEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEET
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCC---CEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcC
Confidence 34567888888899999997766 777 9999999999999999988774 32 335667888888864
Q ss_pred CC----CCChhhhccccccCCcCCcc-------cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH-HhhhcCCCCCeEE
Q 007939 374 RK----NLDPAAAPFAKDPGDFMGLR-------EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK-AMRESDSVKPAIF 441 (584)
Q Consensus 374 r~----~l~~~k~~fA~~~~~~~~~~-------~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~-~M~~~~~erPIIF 441 (584)
.. .|-.++... ...+.... ..-+=.+.+-.++.||||=++ .++.+|++.+. .+. +..+||.
T Consensus 72 ~Gld~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A-~~~~I~~~~~~~~i~---~~akiIv 144 (244)
T PF00208_consen 72 DGLDVEELLRIKEER---GSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCA-LGNVINEDNAPSLIK---SGAKIIV 144 (244)
T ss_dssp TEEHHHHHHHHHHHH---SSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEES-SSTSBSCHHHCHCHH---TT-SEEE
T ss_pred CCchHHHHHHHHHHh---CCcccccccccccceeEeccccccccccccEEEEcC-CCCeeCHHHHHHHHh---ccCcEEE
Confidence 31 122221111 00010000 001111134556999999884 68999999999 763 3578999
Q ss_pred ecCC-CCC
Q 007939 442 AMSN-PTM 448 (584)
Q Consensus 442 aLSN-Pt~ 448 (584)
--+| |++
T Consensus 145 egAN~p~t 152 (244)
T PF00208_consen 145 EGANGPLT 152 (244)
T ss_dssp ESSSSSBS
T ss_pred eCcchhcc
Confidence 9999 554
No 56
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.74 E-value=0.46 Score=50.03 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-hhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
-.-+|-+|++..++..+.+++. .+++++|-|. .|.-+|.+|.. .| ..+.+++|+
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~---------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYG---LNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF---------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC----------
Confidence 3567889999999999999988 9999999988 99999998864 23 247777764
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ .|++|-+.+.|+.|+.++|+.
T Consensus 193 -------------------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk~ 223 (285)
T PRK10792 193 -------------------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIKP 223 (285)
T ss_pred -------------------CCCHHHHHhh--CCEEEEcCCCcccccHHHcCC
Confidence 1348888888 999999999999999988763
No 57
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.51 E-value=1.3 Score=46.13 Aligned_cols=38 Identities=5% Similarity=-0.238 Sum_probs=31.2
Q ss_pred eeccCccccccchhhHHHHHHhCCcccCHHHHHHHHHH
Q 007939 484 GHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEC 521 (584)
Q Consensus 484 ~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~a 521 (584)
..||+..|-+.++.+.=++.++..--++.+-+..+...
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35788888889999999999988888888888777654
No 58
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.16 E-value=0.57 Score=49.39 Aligned_cols=85 Identities=18% Similarity=0.318 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchh-hHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSA-GLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsA-g~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
-.-+|-.|++.=++..+.+++. .+++++|.|.- |.-+|.+|.. .|. .+.+++++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~---------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRG---AHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK---------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC----------
Confidence 3567888999999999999999 99999999988 9999998865 232 46665442
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ .|++|-+.+.++.|+.++++.
T Consensus 192 -------------------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik~ 222 (285)
T PRK14189 192 -------------------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVKP 222 (285)
T ss_pred -------------------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1358888887 999999999999999977763
No 59
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.11 E-value=0.61 Score=49.53 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=92.8
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hccCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~LAgll~Alr~~g~~ 317 (584)
+|+.+.+.++- |+ .++|+==.+.-+..++++.-. +.+=.||..- .+-.-+|-.|++.=++..|.+
T Consensus 77 ~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~i~ 156 (301)
T PRK14194 77 ARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTCGD 156 (301)
T ss_pred HHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhCCC
Confidence 56666776664 54 366654223334444444332 1121222111 123456788899999999999
Q ss_pred CCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
++. ++|+|+|.| ..|..+|.+|... |. .+++++++
T Consensus 157 l~G---k~V~vIG~s~ivG~PmA~~L~~~-----ga-------tVtv~~~~----------------------------- 192 (301)
T PRK14194 157 LTG---KHAVVIGRSNIVGKPMAALLLQA-----HC-------SVTVVHSR----------------------------- 192 (301)
T ss_pred CCC---CEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEECCC-----------------------------
Confidence 888 999999996 9999999999763 42 47777653
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLS 444 (584)
..++.|++++ .|++|=+-+.++.+++++++ +.-||.=.|
T Consensus 193 t~~l~e~~~~--ADIVIsavg~~~~v~~~~ik-------~GaiVIDvg 231 (301)
T PRK14194 193 STDAKALCRQ--ADIVVAAVGRPRLIDADWLK-------PGAVVIDVG 231 (301)
T ss_pred CCCHHHHHhc--CCEEEEecCChhcccHhhcc-------CCcEEEEec
Confidence 1258888988 99999988889999988744 345776666
No 60
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=90.97 E-value=0.3 Score=53.80 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=74.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccc-cCCcCCcccCCCHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKD-PGDFMGLREGASLL 401 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~-~~~~~~~~~~~~L~ 401 (584)
.||+|+||||+ -.-.++-+.+.+...++ -+.|||+|-+- ..| .-+...-+.+.+. ..++. .....++.
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~-v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIK-VHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCHH
Confidence 38999999996 33344444332123343 26899999752 111 0011111112221 11111 11346799
Q ss_pred HHhcccCCcEEEeecCCCCC----------------------------------CCHHHHHHhhhcCCCCCeEEecCCCC
Q 007939 402 EVVRKVKPHVLLGLSGVGGV----------------------------------FNEEVLKAMRESDSVKPAIFAMSNPT 447 (584)
Q Consensus 402 evV~~vkptvLIG~S~~~g~----------------------------------Fteevv~~M~~~~~erPIIFaLSNPt 447 (584)
||++. +|..|=.-.++|. .=.++++.|. ++|+.-+|+-.|||.
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~-~~~Pda~lin~TNP~ 147 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVE-ELAPDAWLINFTNPA 147 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHH-HHCCCeEEEEecCHH
Confidence 99988 7877744333331 1237778885 489999999999999
Q ss_pred CccCCCHHHHhcccCCcEEEEeC
Q 007939 448 MNAECTAADAFKHAGENIVFASG 470 (584)
Q Consensus 448 ~~aE~tpeda~~wT~Grai~AsG 470 (584)
. +..+-+++++.-| +|.+|
T Consensus 148 ~---ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 148 G---IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred H---HHHHHHHHhccCC-EEeeC
Confidence 6 5566667777444 55554
No 61
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=90.75 E-value=0.39 Score=50.25 Aligned_cols=49 Identities=18% Similarity=0.442 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.|++.+++..+..+++ .+++++|||-|+.+|+-.+.. .|. ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~---k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKG---KTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 3478888888888888 899999999987766555443 455 579999984
No 62
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.59 E-value=1.7 Score=49.37 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=31.1
Q ss_pred CCcEEEeecCCCC-----CCCHHHHHHhhhcCCCCCeEEecCCCC-CccCCCH
Q 007939 408 KPHVLLGLSGVGG-----VFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTA 454 (584)
Q Consensus 408 kptvLIG~S~~~g-----~Fteevv~~M~~~~~erPIIFaLSNPt-~~aE~tp 454 (584)
+.|++|.+++.+| +++++.++.|. ..-+|.=++-+. ..+|++.
T Consensus 248 gaDVVIetag~pg~~aP~lit~~~v~~mk----pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 248 EVDIIITTALIPGKPAPKLITAEMVASMK----PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred CCCEEEECCCCCcccCcchHHHHHHHhcC----CCCEEEEEccCCCCCccccc
Confidence 4999999999876 67999999993 455666677653 3345553
No 63
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.53 E-value=0.7 Score=47.90 Aligned_cols=126 Identities=18% Similarity=0.251 Sum_probs=72.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCC--cCC-cccCCCH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMG-LREGASL 400 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~--~~~-~~~~~~L 400 (584)
.||.|+|||..|.++|..+... |+ ..++++|.. .++ +......+.+.... ... .....+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~------~ev~L~D~~----~~~--~~~~~~dl~~~~~~~~~~~~i~~~~d~ 65 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL------GDVVLFDIV----EGV--PQGKALDIAEAAPVEGFDTKITGTNDY 65 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC------eEEEEEECC----Cch--hHHHHHHHHhhhhhcCCCcEEEeCCCH
Confidence 5899999999999999877542 33 169999982 111 11111111111000 000 0112455
Q ss_pred HHHhcccCCcEEEeecCCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCC---
Q 007939 401 LEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE--- 463 (584)
Q Consensus 401 ~evV~~vkptvLIG~S~~~---g-----------~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~G--- 463 (584)
++++. .|++|=+.+.| | ..-+++++.|.+ ++...+++-.|||.. ....-+++++ |
T Consensus 66 -~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~-~~~~~~viv~tNP~d---~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 66 -EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKK-YAPDAIVIVVTNPVD---AMTYVALKES-GFPK 137 (307)
T ss_pred -HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHh-CCCc
Confidence 45766 88887332222 2 123456666754 778888888899985 4555556665 4
Q ss_pred cEEEEeCCCCC
Q 007939 464 NIVFASGSPFE 474 (584)
Q Consensus 464 rai~AsGSPf~ 474 (584)
+-+|++|+-.+
T Consensus 138 ~~viG~gt~ld 148 (307)
T PRK06223 138 NRVIGMAGVLD 148 (307)
T ss_pred ccEEEeCCCcH
Confidence 56889985554
No 64
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.36 E-value=0.52 Score=49.04 Aligned_cols=57 Identities=21% Similarity=0.419 Sum_probs=39.9
Q ss_pred cCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 289 ~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+.-||-|- .|++.+++..+..++. ++++|+|||-+|.+||..+ . +.|. ++|+++|+.
T Consensus 103 l~G~NTD~--------~G~~~~l~~~~~~~~~---k~vlI~GAGGagrAia~~L----a-~~G~------~~V~I~~R~ 159 (289)
T PRK12548 103 LTGHITDG--------LGFVRNLREHGVDVKG---KKLTVIGAGGAATAIQVQC----A-LDGA------KEITIFNIK 159 (289)
T ss_pred EEEEecCH--------HHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHH----H-HCCC------CEEEEEeCC
Confidence 45667773 4578888877767777 8999999986665555444 4 3465 579999874
No 65
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.13 E-value=0.56 Score=42.98 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhcc
Q 007939 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (584)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~f 384 (584)
.|+.+|++..+..++. .+++|+|+|..|..+++.+.. .|. .+++++|+.- + ......+.+
T Consensus 4 ~g~~~a~~~~~~~~~~---~~i~iiG~G~~g~~~a~~l~~-----~g~------~~v~v~~r~~----~--~~~~~~~~~ 63 (155)
T cd01065 4 LGFVRALEEAGIELKG---KKVLILGAGGAARAVAYALAE-----LGA------AKIVIVNRTL----E--KAKALAERF 63 (155)
T ss_pred HHHHHHHHhhCCCCCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCCH----H--HHHHHHHHH
Confidence 5899999998887777 999999999888777777754 231 4688888741 1 111111122
Q ss_pred ccccCCcCCcccCCCHHHHhcccCCcEEEeecC
Q 007939 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG 417 (584)
Q Consensus 385 A~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~ 417 (584)
...... ....++.++++. +|++|-+..
T Consensus 64 ~~~~~~----~~~~~~~~~~~~--~Dvvi~~~~ 90 (155)
T cd01065 64 GELGIA----IAYLDLEELLAE--ADLIINTTP 90 (155)
T ss_pred hhcccc----eeecchhhcccc--CCEEEeCcC
Confidence 110000 012456666665 899997764
No 66
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.05 E-value=0.67 Score=48.72 Aligned_cols=85 Identities=19% Similarity=0.359 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCC
Q 007939 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (584)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~ 376 (584)
+-.-+|-.|++.=++..+.+++. .+++++|-+ .-|.-+|.++... | ..+..++|+
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~G---k~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~--------- 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAG---KRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK--------- 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC---------
Confidence 34567888899999999999988 999999998 8888888777542 3 246666653
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007939 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (584)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~ 428 (584)
..+|.+.++. +|++|++-+.++.+|+++|+
T Consensus 186 --------------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 --------------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred --------------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 1348889988 99999999999999999974
No 67
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.98 E-value=0.87 Score=47.96 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=87.5
Q ss_pred HHHHHHHHHHC--CCe---eeEeccCCCChHHHHHHHHh--hccCcccc--------CcchhHHHHHHHHHHHHHHhCCC
Q 007939 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYR--KRFCMFND--------DIQGTAGVALAGLLGTVRAQGLS 317 (584)
Q Consensus 253 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr--~~~~~FND--------DiQGTaaV~LAgll~Alr~~g~~ 317 (584)
+|+.+.+.++- |++ ++|+==.+.-+..++++... +.+=.||. ...+-.-+|-+|++.=++..+.+
T Consensus 75 ~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~ 154 (281)
T PRK14183 75 KEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRLVTGLDGFVPCTPLGVMELLEEYEID 154 (281)
T ss_pred HHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhhHHhcCCCCCCCCcHHHHHHHHHHcCCC
Confidence 56666777663 543 66654223333333443322 11222221 11334567888899999999999
Q ss_pred CCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
++. +++|++|-+ ..|.-+|.+|.. .|. .+.+++|+
T Consensus 155 l~G---k~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~----------------------------- 190 (281)
T PRK14183 155 VKG---KDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF----------------------------- 190 (281)
T ss_pred CCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-----------------------------
Confidence 988 999999998 889999988864 232 35555542
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
.++|.+.+++ +|++|-+.+.++.|+.++|+.
T Consensus 191 T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 221 (281)
T PRK14183 191 TKDLKAHTKK--ADIVIVGVGKPNLITEDMVKE 221 (281)
T ss_pred CcCHHHHHhh--CCEEEEecCcccccCHHHcCC
Confidence 1347788888 999999999999999999884
No 68
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.90 E-value=1 Score=47.72 Aligned_cols=130 Identities=15% Similarity=0.232 Sum_probs=77.2
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCC-CCChhhhccccccCCcCCcccCCCHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLL 401 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~-~l~~~k~~fA~~~~~~~~~~~~~~L~ 401 (584)
..||.|+|||+.|.++|.+++. .|+. .+.|+|.+--..++.. ++.+. ..+...... .....+++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~-----~~~~------~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~---i~~~~d~~ 69 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQ-----KNLG------DVVLYDVIKGVPQGKALDLKHF-STLVGSNIN---ILGTNNYE 69 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHH-----CCCC------eEEEEECCCccchhHHHHHhhh-ccccCCCeE---EEeCCCHH
Confidence 3799999999999998887654 3542 4999997421111110 12221 111111000 01124565
Q ss_pred HHhcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcE
Q 007939 402 EVVRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (584)
Q Consensus 402 evV~~vkptvLIG~S~~~g~--------------Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~--Gra 465 (584)
++++ .|++|=+.+.+.. .-+++.+.|.+ +|..-+++-.|||.. .....+.+++. =.-
T Consensus 70 -~l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~-~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~r 142 (319)
T PTZ00117 70 -DIKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKK-YCPNAFVICVTNPLD---CMVKVFQEKSGIPSNK 142 (319)
T ss_pred -HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecChHH---HHHHHHHHhhCCCccc
Confidence 6777 8988755544332 23488888864 888888888899995 44566666652 144
Q ss_pred EEEeCCCCC
Q 007939 466 VFASGSPFE 474 (584)
Q Consensus 466 i~AsGSPf~ 474 (584)
+|++|+-.+
T Consensus 143 viG~gt~ld 151 (319)
T PTZ00117 143 ICGMAGVLD 151 (319)
T ss_pred EEEecchHH
Confidence 777775443
No 69
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=89.88 E-value=0.47 Score=49.57 Aligned_cols=57 Identities=26% Similarity=0.257 Sum_probs=41.2
Q ss_pred cCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 289 ~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
++=||-|-. |++.+++..+..+++ .+++++|||-|+-+|+-.|.+ .|. ++|+++|+.
T Consensus 104 l~G~NTD~~--------Gf~~~L~~~~~~~~~---k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDVS--------GFGRGMEEGLPNAKL---DSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred EEEEcCCHH--------HHHHHHHhcCcCcCC---CeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 445566654 477888754445666 899999999998888776654 354 579999884
No 70
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.76 E-value=0.84 Score=48.46 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=74.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
.||.|+|||+.|.++|.+++. .|+. .+.|+|.+-=..... -++.+. ..+......+ ....++ +
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~-----~gl~------~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I---~~~~d~-~ 70 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL-----KNLG------DVVLFDIVKNIPQGKALDISHS-NVIAGSNSKV---IGTNNY-E 70 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCCchhhHHHHHHHhh-hhccCCCeEE---EECCCH-H
Confidence 699999999999999887543 4652 399999743222111 112211 1111111011 112456 5
Q ss_pred HhcccCCcEEEeecCCCCCC-------------------CHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC-
Q 007939 403 VVRKVKPHVLLGLSGVGGVF-------------------NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG- 462 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~g~F-------------------teevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~- 462 (584)
++++ .|++|=+.+.++.- -.++++.|.+ ++..-+++--|||.. .....+.+.+.
T Consensus 71 ~l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~-~~p~a~~iv~sNP~d---i~t~~~~~~sg~ 144 (321)
T PTZ00082 71 DIAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKK-YCPNAFVIVITNPLD---VMVKLLQEHSGL 144 (321)
T ss_pred HhCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHhcCC
Confidence 6777 89988555443321 2467777754 777668999999985 44455556552
Q ss_pred -CcEEEEeCCCC
Q 007939 463 -ENIVFASGSPF 473 (584)
Q Consensus 463 -Grai~AsGSPf 473 (584)
-+-+|++|+-.
T Consensus 145 p~~rviGlgt~l 156 (321)
T PTZ00082 145 PKNKVCGMAGVL 156 (321)
T ss_pred ChhhEEEecCcc
Confidence 24577877433
No 71
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.68 E-value=0.94 Score=47.74 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
-.-+|-.|++.-++..+.+++. ++++++|.+ ..|.-+|.||.. +| ..+.+++++
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~---------- 191 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISG---KHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK---------- 191 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC----------
Confidence 4567888899999999999988 999999975 678888888754 23 246667542
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007939 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (584)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~ 428 (584)
..+|.+.+++ +|++|.+.+.++.|++++|+
T Consensus 192 -------------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 -------------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred -------------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358888988 99999999999999999986
No 72
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.63 E-value=3.9 Score=43.42 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=90.7
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hccCccccCc----------chhHHHHHHHHHHHHHHhC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDI----------QGTAGVALAGLLGTVRAQG 315 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi----------QGTaaV~LAgll~Alr~~g 315 (584)
+||.+.+++.- |+ .++|+==.+.-|..++++... +.+=.||..- .+-.-+|-.|++.=++..+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~ 154 (295)
T PRK14174 75 EHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYN 154 (295)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhC
Confidence 57777777774 54 377765444555666655432 2232233221 2234467778899999999
Q ss_pred CCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCc
Q 007939 316 LSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~ 394 (584)
.+++. ++++++|.+ ..|.-+|.||.+.+. +.| ..+..+.++
T Consensus 155 i~l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------atVt~~hs~--------------------------- 196 (295)
T PRK14174 155 IETKG---KHCVVVGRSNIVGKPMANLMLQKLK-ESN-------CTVTICHSA--------------------------- 196 (295)
T ss_pred CCCCC---CEEEEECCCCcchHHHHHHHHhccc-cCC-------CEEEEEeCC---------------------------
Confidence 98888 999999976 578888888865332 122 245555542
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007939 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (584)
Q Consensus 395 ~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~ 428 (584)
..+|.+.+++ +|++|+..+.++.|++++|+
T Consensus 197 --t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 --TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred --chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1358889988 99999999999999999995
No 73
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=89.59 E-value=1.4 Score=42.70 Aligned_cols=84 Identities=17% Similarity=0.338 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcch-hhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCC
Q 007939 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (584)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~ 378 (584)
--+|-.|++.-++..+.+++. .+++++|.+. -|.-+|.||... |. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~G---k~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~----------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEG---KKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK----------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT----EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT-----------
T ss_pred cCCCHHHHHHHHHhcCCCCCC---CEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC-----------
Confidence 446778889999999999888 9999999984 888888777663 32 35556653
Q ss_pred hhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.++. +|++|-..++++.++.++||.
T Consensus 70 ------------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 70 ------------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp ------------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-T
T ss_pred ------------------CCcccceeee--ccEEeeeeccccccccccccC
Confidence 1358888887 999999999999999998874
No 74
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=89.53 E-value=2.4 Score=46.31 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCC
Q 007939 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~ 378 (584)
.|=-+++.+++..|..|..|.+ .++.|+|.|..|..+|+.+... |+ +++.+|... ...
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~g---ktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~~- 152 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAE---RTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QEA- 152 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCc---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------ccc-
Confidence 3445788899999988888888 9999999999999999988765 43 588888631 000
Q ss_pred hhhhccccccCCcCCcccCCCHHHHhcccCCcEEEe-ec-------CCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 007939 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG-LS-------GVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (584)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG-~S-------~~~g~Fteevv~~M~~~~~erPIIFaLSNPt 447 (584)
... ....+|.|+++. .|+++= +. ...+.|+++.+..|. +..|+.=.|.-.
T Consensus 153 -------~~~------~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk----~gailIN~aRG~ 210 (381)
T PRK00257 153 -------EGD------GDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR----PGAWLINASRGA 210 (381)
T ss_pred -------ccC------ccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC----CCeEEEECCCCc
Confidence 000 013468998887 787661 11 124889999999994 567888766533
No 75
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=89.50 E-value=0.56 Score=48.70 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=41.7
Q ss_pred cCccccCcchhHHHHHHHHHHHHHHhCC--CCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 289 FCMFNDDIQGTAGVALAGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 289 ~~~FNDDiQGTaaV~LAgll~Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
+.=+|-|-.| ++.+++..+. .+++ ++++++|||.||-.|+..|.. .|. ++|+++++
T Consensus 100 l~G~NTD~~G--------~~~~l~~~~~~~~~~~---k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nR 157 (282)
T TIGR01809 100 WKGDNTDWDG--------IAGALANIGKFEPLAG---FRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINR 157 (282)
T ss_pred EEEecCCHHH--------HHHHHHhhCCccccCC---ceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeC
Confidence 4456777655 7778876663 4667 999999999888777766654 454 57999987
Q ss_pred C
Q 007939 367 D 367 (584)
Q Consensus 367 ~ 367 (584)
.
T Consensus 158 t 158 (282)
T TIGR01809 158 N 158 (282)
T ss_pred C
Confidence 3
No 76
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=89.47 E-value=0.47 Score=48.34 Aligned_cols=130 Identities=21% Similarity=0.254 Sum_probs=79.5
Q ss_pred EEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 326 IVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 326 iv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+.. .+|.+...++ ... . .....++.|+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~-~---i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADI-K---VSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCc-E---EEECCchHHH
Confidence 579999 98899998877653 31 1125799999864111110 1233322222 111 1 1124568899
Q ss_pred hcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcEEE
Q 007939 404 VRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIVF 467 (584)
Q Consensus 404 V~~vkptvLIG~S~~~g~--------------Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT--~Grai~ 467 (584)
+++ .|++|=+.+.++. .-+++++.|. ++|...+++-.|||.. ....-+++++ .-.-+|
T Consensus 68 ~~~--aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~-~~~p~a~~i~~tNP~d---~~t~~~~~~sg~~~~kvi 141 (263)
T cd00650 68 FKD--ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIE-KYSPDAWIIVVSNPVD---IITYLVWRYSGLPKEKVI 141 (263)
T ss_pred hCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHH-HHCCCeEEEEecCcHH---HHHHHHHHHhCCCchhEE
Confidence 988 8988754443322 2467888885 4889999999999994 5666667763 334466
Q ss_pred EeCCCCCc
Q 007939 468 ASGSPFEN 475 (584)
Q Consensus 468 AsGSPf~p 475 (584)
++|. .++
T Consensus 142 G~~~-ld~ 148 (263)
T cd00650 142 GLGT-LDP 148 (263)
T ss_pred Eeec-chH
Confidence 7765 444
No 77
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.33 E-value=0.77 Score=39.00 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=59.3
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEE-ecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lv-Ds~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
||.|+|+|..|..+++.+... |. ...+|+++ +++. +.+.+.++.|... ....+..|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~~------~~~~~~~~~~~~~-------~~~~~~~~~ 58 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRSP------EKAAELAKEYGVQ-------ATADDNEEA 58 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESSH------HHHHHHHHHCTTE-------EESEEHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCcH------HHHHHHHHhhccc-------cccCChHHh
Confidence 689999999999998887664 43 23578755 6530 1122222222111 012369999
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 007939 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (584)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNP 446 (584)
++. +|++| ++- +...-+++++.+ ....+..+|..++||
T Consensus 59 ~~~--advvi-lav-~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 59 AQE--ADVVI-LAV-KPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH--TSEEE-E-S--GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred hcc--CCEEE-EEE-CHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 996 89877 554 334446788887 336788899888886
No 78
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=89.09 E-value=2.3 Score=46.76 Aligned_cols=92 Identities=9% Similarity=0.094 Sum_probs=51.5
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhcccc
Q 007939 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK 386 (584)
Q Consensus 307 ll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~ 386 (584)
+..++......++. .|++|+|.+.-.+++++.|.+ +.|+. +..+-+. +.+++.+.+.-+.+..
T Consensus 277 ~~~~l~~~~~~l~G---krvai~g~~~~~~~la~~L~e----elGm~-------~v~v~t~---~~~~~~~~~~~~~l~~ 339 (427)
T PRK02842 277 ARKALEPYRELLRG---KRVFFLPDSQLEIPLARFLSR----ECGME-------LVEVGTP---YLNRRFLAAELALLPD 339 (427)
T ss_pred HHHHHHHhhhhcCC---cEEEEECCchhHHHHHHHHHH----hCCCE-------EEEeCCC---CCCHHHHHHHHHhccC
Confidence 44555566666777 999999998889999999876 23553 2222111 0111111111112211
Q ss_pred ccCCcCCcccCCCHHHHhcccCCcEEEeec
Q 007939 387 DPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (584)
Q Consensus 387 ~~~~~~~~~~~~~L~evV~~vkptvLIG~S 416 (584)
...-+. ..+...+++.|+..|||.|||-|
T Consensus 340 ~~~v~~-~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 340 GVRIVE-GQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred CCEEEE-CCCHHHHHHHHHHcCCCEEEccC
Confidence 110000 01223468899999999999977
No 79
>PTZ00325 malate dehydrogenase; Provisional
Probab=89.00 E-value=2 Score=45.81 Aligned_cols=107 Identities=22% Similarity=0.256 Sum_probs=66.5
Q ss_pred CCceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCC
Q 007939 322 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 322 ~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
+-.||+|+|| |.-|..+|..|+. .|+. ..+.|+|.+ .. ++. -+|.+... ... ..+..+..+
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~-----~~~~-----~elvL~Di~-~~-~g~a~Dl~~~~~-~~~----v~~~td~~~ 69 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQ-----NPHV-----SELSLYDIV-GA-PGVAADLSHIDT-PAK----VTGYADGEL 69 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhc-----CCCC-----CEEEEEecC-CC-cccccchhhcCc-Cce----EEEecCCCc
Confidence 3479999999 9999998877652 2332 579999982 21 111 13332111 000 000011134
Q ss_pred HHHHhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 400 LLEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~~---~g~-----------Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
..++++. .|++|=+.+. +|. ..++++++|.+ ++.+.||+.-|||..
T Consensus 70 ~~~~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~-~~~~~iviv~SNPvd 129 (321)
T PTZ00325 70 WEKALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVAS-SAPKAIVGIVSNPVN 129 (321)
T ss_pred hHHHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH
Confidence 5788988 8987755444 331 44688889964 888999999999995
No 80
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=89.00 E-value=1.5 Score=43.98 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhCC---------CCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc
Q 007939 301 GVALAGLLGTVRAQGL---------SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (584)
Q Consensus 301 aV~LAgll~Alr~~g~---------~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi 370 (584)
-+|-.|++-=|+..+. +++. ++++++|-+ ..|.-+|.||.. +| ..++.+|++|..
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~G---K~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~ 98 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYG---KTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQ 98 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCccc
Confidence 3456666666666654 6666 999999986 467777777754 34 258999999987
Q ss_pred ccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCC-CCHHHHHH
Q 007939 371 TKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLKA 429 (584)
Q Consensus 371 ~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~-Fteevv~~ 429 (584)
...+.....|.+ -+. .+ ...+|.|.++. +|++|-.-+.++. ++.|+|+.
T Consensus 99 ~~~~~~~~~hs~--t~~-~~-----~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik~ 148 (197)
T cd01079 99 VFTRGESIRHEK--HHV-TD-----EEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLKD 148 (197)
T ss_pred cccccccccccc--ccc-cc-----hhhHHHHHhhh--CCEEEEccCCCCCccCHHHcCC
Confidence 765532111110 000 00 01348899988 9999999999998 89999884
No 81
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.80 E-value=3 Score=43.91 Aligned_cols=131 Identities=13% Similarity=0.180 Sum_probs=89.6
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hccCccccCcch--------hHHHHHHHHHHHHHHhCCC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDIQG--------TAGVALAGLLGTVRAQGLS 317 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDiQG--------TaaV~LAgll~Alr~~g~~ 317 (584)
+|+.+.++++- |+ .++|+==...-+..++++... +.+=.||..-.| -.-+|-+|++.=++..+.+
T Consensus 76 ~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~av~~lL~~~~i~ 155 (278)
T PRK14172 76 EDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKGEKCFLPCTPNSVITLIKSLNID 155 (278)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCC
Confidence 67778887774 54 377763222223333443322 223233333332 3567888999999999999
Q ss_pred CCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
++. ++++++|-+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 156 l~G---k~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~----------------------------- 191 (278)
T PRK14172 156 IEG---KEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK----------------------------- 191 (278)
T ss_pred CCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC-----------------------------
Confidence 998 999999975 578888888854 232 46777653
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-+.+.++.|++|+|+.
T Consensus 192 T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 222 (278)
T PRK14172 192 TKNLKEVCKK--ADILVVAIGRPKFIDEEYVKE 222 (278)
T ss_pred CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1358888888 999999999999999998873
No 82
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.74 E-value=2.5 Score=44.05 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=26.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.||.|+|+|..|.++|..+... | .+++++|+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 6899999999999999999764 4 257777774
No 83
>PLN02928 oxidoreductase family protein
Probab=88.56 E-value=3.6 Score=44.21 Aligned_cols=147 Identities=17% Similarity=0.198 Sum_probs=84.0
Q ss_pred chhHHHHHHHHHHHHHHh------------CCC-CCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEE
Q 007939 297 QGTAGVALAGLLGTVRAQ------------GLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFL 363 (584)
Q Consensus 297 QGTaaV~LAgll~Alr~~------------g~~-l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~l 363 (584)
+.+|--+++.+|+.+|.. +.+ -.+|.++++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 345666677777766632 001 1234449999999999999999998764 43 5888
Q ss_pred EecCcccccCCC-CCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHhhhcCCCCC
Q 007939 364 LDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKP 438 (584)
Q Consensus 364 vDs~GLi~~~r~-~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S----~~~g~Fteevv~~M~~~~~erP 438 (584)
+|+.. ..... .+. .+......... . .....+|.|+++. .|+++-.- ...+.|+++.+..|. +..
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk----~ga 256 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVD-E-KGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK----KGA 256 (347)
T ss_pred ECCCC--Chhhhhhhc-ccccccccccc-c-cCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC----CCe
Confidence 88741 11000 000 00011000000 0 0123579999988 89988542 224899999999994 466
Q ss_pred eEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007939 439 AIFAMSNPTMNAECTAADAFKHAGENIVFA 468 (584)
Q Consensus 439 IIFaLSNPt~~aE~tpeda~~wT~Grai~A 468 (584)
+|.=.|.-.---|----+|++ .|+.-.|
T Consensus 257 ~lINvaRG~lVde~AL~~AL~--~g~i~gA 284 (347)
T PLN02928 257 LLVNIARGGLLDYDAVLAALE--SGHLGGL 284 (347)
T ss_pred EEEECCCccccCHHHHHHHHH--cCCeeEE
Confidence 777666543322222223333 5666544
No 84
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.48 E-value=2 Score=45.45 Aligned_cols=127 Identities=17% Similarity=0.298 Sum_probs=77.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
.||.|+|||..|..+|-+|+. .|+. ..|.|+|.+-=..++. -+|.+.. +|-+.. .. ...+. +
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~~-----~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~-~i----~~~~~-~ 69 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGIA-----DELVIIDINKEKAEGDAMDLSHAV-PFTSPT-KI----YAGDY-S 69 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCchhHHHHHHHHhhc-cccCCe-EE----EeCCH-H
Confidence 699999999999999987764 3553 5799999732111111 1233322 222211 10 11334 4
Q ss_pred HhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcEE
Q 007939 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIV 466 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~---g~-----------Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT--~Grai 466 (584)
.+++ .|++|=+.+.+ |- .=+++++.|.+ ++...+|+-.|||.. +...-+++++ +-+-+
T Consensus 70 ~~~~--adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~-~~~~~~vivvsNP~d---~~~~~~~k~sg~p~~~v 143 (315)
T PRK00066 70 DCKD--ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMA-SGFDGIFLVASNPVD---ILTYATWKLSGFPKERV 143 (315)
T ss_pred HhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCcHH---HHHHHHHHHhCCCHHHE
Confidence 5777 89988555543 31 11456777754 788899999999994 5666777766 33446
Q ss_pred EEeCCCC
Q 007939 467 FASGSPF 473 (584)
Q Consensus 467 ~AsGSPf 473 (584)
|++|.--
T Consensus 144 iG~gt~L 150 (315)
T PRK00066 144 IGSGTSL 150 (315)
T ss_pred eecCchH
Confidence 7776544
No 85
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.42 E-value=2.8 Score=44.29 Aligned_cols=134 Identities=20% Similarity=0.195 Sum_probs=89.7
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hccCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~LAgll~Alr~~g~~ 317 (584)
+||.+.++++- |+ .++|+==...-+..++++.-. +.+=.||.-- .+-.-+|-+|++.=++..+.+
T Consensus 75 ~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~i~ 154 (286)
T PRK14184 75 EELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLALGLPGFRPCTPAGVMTLLERYGLS 154 (286)
T ss_pred HHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 67777888774 54 377765333334444444322 2222222222 233567888999999999999
Q ss_pred CCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
++. ++++++|.+ ..|.-+|.||..... ..| ..+..++++
T Consensus 155 l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~----------------------------- 194 (286)
T PRK14184 155 PAG---KKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSR----------------------------- 194 (286)
T ss_pred CCC---CEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCC-----------------------------
Confidence 988 999999975 568888877754110 012 246666653
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~ 428 (584)
..+|.+.++. +|++|++.+.|+.+++++|+
T Consensus 195 t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358889988 99999999999999999985
No 86
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.36 E-value=1.3 Score=46.71 Aligned_cols=130 Identities=20% Similarity=0.223 Sum_probs=86.7
Q ss_pred HHHHHHHHHHC--CCe---eeEeccCCCChHHHHHHHHh--hccCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 007939 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYR--KRFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (584)
Q Consensus 253 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~LAgll~Alr~~g~~ 317 (584)
+||.+.++++- |++ ++|+==...-+..++++... +.+=.||..- .+-.-+|-+|++.=++..|.+
T Consensus 76 ~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 155 (284)
T PRK14179 76 EELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYNVE 155 (284)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCC
Confidence 56777777664 533 66643223334444443322 1122222211 223567788889999999999
Q ss_pred CCCCCCceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 318 LTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 318 l~dl~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
++. .+++|+|. |..|.-+|.+|... |. .+.++.++
T Consensus 156 l~G---k~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~----------------------------- 191 (284)
T PRK14179 156 LEG---KHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR----------------------------- 191 (284)
T ss_pred CCC---CEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-----------------------------
Confidence 888 99999999 99999999999763 43 34444321
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~ 428 (584)
..+|.+.+++ .|++|-.-+.++.+++++++
T Consensus 192 t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 192 TRNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred CCCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 1358888988 99999999999999998754
No 87
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=88.19 E-value=0.67 Score=48.76 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=73.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCC--cC-CcccCCCH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FM-GLREGASL 400 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~--~~-~~~~~~~L 400 (584)
.||.|+|+|..|.++|-.++.. |+. +++++|..--+.+++ ...+.+.... .. ......++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~~------~VvlvDi~~~l~~g~------a~d~~~~~~~~~~~~~i~~t~d~ 64 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----ELA------DLVLLDVVEGIPQGK------ALDMYEASPVGGFDTKVTGTNNY 64 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CCC------eEEEEeCCCChhHHH------HHhhhhhhhccCCCcEEEecCCH
Confidence 4899999999999999977652 431 499999832211111 1111111100 00 01123567
Q ss_pred HHHhcccCCcEEEeecCCC---C-C------CCHH----HHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCc
Q 007939 401 LEVVRKVKPHVLLGLSGVG---G-V------FNEE----VLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GEN 464 (584)
Q Consensus 401 ~evV~~vkptvLIG~S~~~---g-~------Ftee----vv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT--~Gr 464 (584)
.+ ++. .|++|=+.+.| | . ++-+ +++.|.+ ++...+|+-.|||.. +...-+++++ +-+
T Consensus 65 ~~-~~~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~-~~p~~~iIv~tNP~d---i~t~~~~~~sg~~~~ 137 (305)
T TIGR01763 65 AD-TAN--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIME-HSPNPIIVVVSNPLD---AMTYVAWQKSGFPKE 137 (305)
T ss_pred HH-hCC--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHHCcCHH
Confidence 66 665 78876443322 2 1 3334 5555643 788999999999995 6677777774 223
Q ss_pred EEEEeCCCCC
Q 007939 465 IVFASGSPFE 474 (584)
Q Consensus 465 ai~AsGSPf~ 474 (584)
-+|++|.=.+
T Consensus 138 rviG~g~~ld 147 (305)
T TIGR01763 138 RVIGQAGVLD 147 (305)
T ss_pred HEEEeccchH
Confidence 4778875433
No 88
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.18 E-value=0.41 Score=45.63 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=50.2
Q ss_pred CCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC-------------cccccCCCCCChhhhcccccc
Q 007939 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-------------GLITKERKNLDPAAAPFAKDP 388 (584)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~-------------GLi~~~r~~l~~~k~~fA~~~ 388 (584)
...+|||.|+|.+|.|.++++..... ++..+|.. ++.+...+.+... .|++..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa------------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~ 84 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGA------------EVVVPDERPERLRQLESLGAYFIEVDYEDHLERK--DFDKAD 84 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB---CCHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCC------------EEEeccCCHHHHHhhhcccCceEEEccccccccc--ccchhh
Confidence 34899999999999999999887543 35555542 0001000000000 022211
Q ss_pred CCcCCcccCCCHHHHhcccCCcEEEeec-----CCCCCCCHHHHHHhh
Q 007939 389 GDFMGLREGASLLEVVRKVKPHVLLGLS-----GVGGVFNEEVLKAMR 431 (584)
Q Consensus 389 ~~~~~~~~~~~L~evV~~vkptvLIG~S-----~~~g~Fteevv~~M~ 431 (584)
..-........|.+.++. .|++|+.. ..|-+||++.++.|.
T Consensus 85 ~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 85 YYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp CHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 000000123458888887 79999743 335689999999993
No 89
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.96 E-value=4 Score=43.11 Aligned_cols=131 Identities=16% Similarity=0.207 Sum_probs=90.3
Q ss_pred HHHHHHHHHHC--CCe---eeEeccCCCChHHHHHHHH---hhc--c------CccccCcchhHHHHHHHHHHHHHHhCC
Q 007939 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERY---RKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (584)
Q Consensus 253 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ry---r~~--~------~~FNDDiQGTaaV~LAgll~Alr~~g~ 316 (584)
+||.+.+.++- |++ ++|+==.+.-+..++++.. +|- + ..|.++..+-.-+|-+|++.=++..+.
T Consensus 74 ~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y~i 153 (282)
T PRK14166 74 NELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEI 153 (282)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 67777888774 653 7776433333444444332 221 1 233332235567788899999999999
Q ss_pred CCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
+++. ++++++|-+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 154 ~l~G---k~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~---------------------------- 190 (282)
T PRK14166 154 DLEG---KDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK---------------------------- 190 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC----------------------------
Confidence 9988 999999975 578888888754 232 36666653
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
.++|.+.+++ +|++|-+.+.++.|++++|+.
T Consensus 191 -T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 221 (282)
T PRK14166 191 -TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVKE 221 (282)
T ss_pred -CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1348888888 999999999999999998883
No 90
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=87.85 E-value=0.9 Score=46.87 Aligned_cols=49 Identities=20% Similarity=0.481 Sum_probs=36.0
Q ss_pred HHHHHHHHH-hCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 305 AGLLGTVRA-QGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 305 Agll~Alr~-~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.|++++++. .+..++. .+++++|+|.+|-.++..+.. .|. ++|+++++.
T Consensus 107 ~G~~~~l~~~~~~~~~~---k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~ 156 (278)
T PRK00258 107 IGFVRALEERLGVDLKG---KRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHhccCCCCCC---CEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 447777764 5666777 999999999777777766654 354 479999884
No 91
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.82 E-value=0.61 Score=42.60 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=29.9
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
++||+++|+|+-|.-+|+.|+...+ ++|.++|.+=
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----------~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----------GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----------SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----------CceeecCCcc
Confidence 4899999999999999999988744 6899999973
No 92
>PRK08605 D-lactate dehydrogenase; Validated
Probab=87.72 E-value=3.9 Score=43.58 Aligned_cols=116 Identities=18% Similarity=0.246 Sum_probs=72.7
Q ss_pred chhHHHHHHHHHHHHHHh---------C-----CC--CCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCc
Q 007939 297 QGTAGVALAGLLGTVRAQ---------G-----LS--LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (584)
Q Consensus 297 QGTaaV~LAgll~Alr~~---------g-----~~--l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~ 360 (584)
+.+|=-+++.+|+.+|.. | .. -.+|.+++|.|+|.|..|..+|+.+... .|+ +
T Consensus 104 ~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~ 172 (332)
T PRK08605 104 ESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------D 172 (332)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------E
Confidence 345555677777666521 1 00 1235559999999999999999998532 243 6
Q ss_pred EEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCC
Q 007939 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSV 436 (584)
Q Consensus 361 i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~----~~g~Fteevv~~M~~~~~e 436 (584)
+|.+|+.. ......++. ...+|.|+++. .|+++=..- ..+.|+++.++.|. +
T Consensus 173 V~~~d~~~---------~~~~~~~~~---------~~~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk----~ 228 (332)
T PRK08605 173 VVAYDPFP---------NAKAATYVD---------YKDTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK----K 228 (332)
T ss_pred EEEECCCc---------cHhHHhhcc---------ccCCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC----C
Confidence 88888742 000111111 12479999987 898884421 23678888888883 5
Q ss_pred CCeEEecCCCC
Q 007939 437 KPAIFAMSNPT 447 (584)
Q Consensus 437 rPIIFaLSNPt 447 (584)
..++.=.|.=.
T Consensus 229 gailIN~sRG~ 239 (332)
T PRK08605 229 GAVFVNCARGS 239 (332)
T ss_pred CcEEEECCCCc
Confidence 67888777643
No 93
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=87.71 E-value=0.86 Score=47.92 Aligned_cols=92 Identities=22% Similarity=0.310 Sum_probs=57.5
Q ss_pred HHHHHHHHHHC-CCe-eeEeccCCCChHHHHHHHHhhc-----------------cCccccCcchhHHHHHHHHHHHHHH
Q 007939 253 DEFMEAVHARW-PKA-IVQFEDFQMKWAFETLERYRKR-----------------FCMFNDDIQGTAGVALAGLLGTVRA 313 (584)
Q Consensus 253 defv~av~~~~-P~~-lIqfEDf~~~nAf~lL~ryr~~-----------------~~~FNDDiQGTaaV~LAgll~Alr~ 313 (584)
|+|-++|+..+ +.+ ..+..==-...+++++|+.-.+ +..+|-|-. |++.+|+.
T Consensus 46 ~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~~~A~~iGAVNTl~~~~~g~l~G~NTD~~--------G~~~~L~~ 117 (283)
T COG0169 46 EDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELSPRARLIGAVNTLVREDDGKLRGYNTDGI--------GFLRALKE 117 (283)
T ss_pred HHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCCHHHHHhCCceEEEEccCCEEEEEcCCHH--------HHHHHHHh
Confidence 44444444443 333 2333222234567777776432 234444433 47788887
Q ss_pred hCC--CCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 314 QGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 314 ~g~--~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
.+. ..+. +++|++|||-|+.+|+-.|.++ |. ++|+++++
T Consensus 118 ~~~~~~~~~---~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR 158 (283)
T COG0169 118 FGLPVDVTG---KRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR 158 (283)
T ss_pred cCCCcccCC---CEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC
Confidence 663 4445 8999999999999988777664 44 68999998
No 94
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.51 E-value=1.8 Score=45.79 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCC
Q 007939 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (584)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~ 378 (584)
.-+|-.|++.=++..+.+++. ++++++|.+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 139 ~PcTp~avi~ll~~y~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~----------- 192 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTG---KNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK----------- 192 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 345677888888889999888 999999975 578888888754 232 47777653
Q ss_pred hhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-+.+.++.++.++|+.
T Consensus 193 ------------------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 193 ------------------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred ------------------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcCC
Confidence 1358888888 999999999999999998884
No 95
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=87.47 E-value=0.31 Score=46.00 Aligned_cols=88 Identities=18% Similarity=0.351 Sum_probs=50.2
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhh--ccccccCCc-CCcccCCCHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA--PFAKDPGDF-MGLREGASLL 401 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~--~fA~~~~~~-~~~~~~~~L~ 401 (584)
||.|+|||+.|+.+|..+... | .++.|.+++.-..+ .+...+. .|... -.. ....-..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~---~i~~~~~n~~~~~~-~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE---EINETRQNPKYLPG-IKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH---HHHHHTSETTTSTT-SBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH---HHHHhCCCCCCCCC-cccCcccccccCHH
Confidence 689999999999999888763 3 36777776531111 1211111 11110 000 0011246799
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhh
Q 007939 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRE 432 (584)
Q Consensus 402 evV~~vkptvLIG~S~~~g~Fteevv~~M~~ 432 (584)
+++++ .|++| +. .|-.+-+++++.++.
T Consensus 65 ~a~~~--ad~Ii-ia-vPs~~~~~~~~~l~~ 91 (157)
T PF01210_consen 65 EALED--ADIII-IA-VPSQAHREVLEQLAP 91 (157)
T ss_dssp HHHTT---SEEE-E--S-GGGHHHHHHHHTT
T ss_pred HHhCc--ccEEE-ec-ccHHHHHHHHHHHhh
Confidence 99987 78765 33 244566899999964
No 96
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.29 E-value=4.6 Score=42.74 Aligned_cols=131 Identities=14% Similarity=0.232 Sum_probs=89.8
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hccCccccC--------cchhHHHHHHHHHHHHHHhCCC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDD--------IQGTAGVALAGLLGTVRAQGLS 317 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDD--------iQGTaaV~LAgll~Alr~~g~~ 317 (584)
+||.+.+.++- |+ .++|+==.+.-+..++++... +.+=+||.. -.+-.-+|-+|++.=++..|.+
T Consensus 75 ~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 154 (284)
T PRK14170 75 EKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTGTQ 154 (284)
T ss_pred HHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 57777777774 54 378875334444444544432 122222221 1234567788899999999999
Q ss_pred CCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
++. ++++++|.+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 155 l~G---k~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~----------------------------- 190 (284)
T PRK14170 155 IEG---KRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR----------------------------- 190 (284)
T ss_pred CCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-----------------------------
Confidence 888 999999975 568788877754 232 46666553
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.++. +|++|-+.+.++.|+.++|+.
T Consensus 191 T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 191 TKDLPQVAKE--ADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1358888888 999999999999999999884
No 97
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.16 E-value=19 Score=37.23 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=26.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5899999999999999988653 43 58899874
No 98
>PRK05086 malate dehydrogenase; Provisional
Probab=86.59 E-value=4 Score=43.18 Aligned_cols=105 Identities=20% Similarity=0.279 Sum_probs=65.0
Q ss_pred ceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHH
Q 007939 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (584)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~ 401 (584)
.||+|+|| |..|..+|.++... .+.- ..+.++|++-. ..+. -++.+. +....+.+ ....++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~~-----~el~L~d~~~~-~~g~alDl~~~-----~~~~~i~~-~~~~d~~ 64 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPAG-----SELSLYDIAPV-TPGVAVDLSHI-----PTAVKIKG-FSGEDPT 64 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCCc-----cEEEEEecCCC-CcceehhhhcC-----CCCceEEE-eCCCCHH
Confidence 38999999 99998888877442 1221 46899997522 1110 022210 00000000 0124677
Q ss_pred HHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCC
Q 007939 402 EVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPT 447 (584)
Q Consensus 402 evV~~vkptvLIG~S~~~---g~-----------Fteevv~~M~~~~~erPIIFaLSNPt 447 (584)
+.+++ .|++|=+.+.+ |. ..+++++.|.+ ++.+.+|+-.|||.
T Consensus 65 ~~l~~--~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~-~~~~~ivivvsNP~ 121 (312)
T PRK05086 65 PALEG--ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAK-TCPKACIGIITNPV 121 (312)
T ss_pred HHcCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCch
Confidence 88887 89887555542 21 45689999965 89999999999998
No 99
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=86.28 E-value=5 Score=43.96 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
..|=-+++.+++..|..|..|.+ .++.|+|.|..|--+|+.+... |+ ++..+|+. +..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~g---ktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~- 151 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHD---RTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD- 151 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCC---CEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc-
Confidence 34555788899888888887888 9999999999999999998765 43 58888853 110
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEe---ecC-----CCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007939 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG---LSG-----VGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (584)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG---~S~-----~~g~Fteevv~~M~~~~~erPIIFaLSN 445 (584)
. ... ....+|.|+++. .|+++= ++. .-+.|+++.++.|. +..|++=.|.
T Consensus 152 ~-------~~~------~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk----~gailIN~aR 208 (378)
T PRK15438 152 R-------GDE------GDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK----PGAILINACR 208 (378)
T ss_pred c-------ccc------cccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC----CCcEEEECCC
Confidence 0 000 012468898877 888771 111 24789999999994 5677776664
No 100
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.90 E-value=4.5 Score=42.15 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=60.7
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV 404 (584)
+|-|+|.|..|..+|..+... | .++.++|+.- +... .++.... ....++.|++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~~------~~~~----~l~~~g~-----~~~~s~~~~~ 54 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHDQ------DAVK----AMKEDRT-----TGVANLRELS 54 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECCH------HHHH----HHHHcCC-----cccCCHHHHH
Confidence 689999999999999988653 4 2577777631 1111 2222110 1124566665
Q ss_pred ccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
+.. ++|++|= +...+ ..+++++.++....+..||+-+||..+
T Consensus 55 ~~~~~~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~ 97 (298)
T TIGR00872 55 QRLSAPRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYY 97 (298)
T ss_pred hhcCCCCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCCc
Confidence 442 4888874 33345 889999888654556789999999764
No 101
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.54 E-value=2.6 Score=44.80 Aligned_cols=131 Identities=13% Similarity=0.130 Sum_probs=87.4
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hcc---------CccccCc-chhHHHHHHHHHHHHHHhC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRF---------CMFNDDI-QGTAGVALAGLLGTVRAQG 315 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~---------~~FNDDi-QGTaaV~LAgll~Alr~~g 315 (584)
+||.+.+.++- |+ .++|+==.+.-+..++++... +.+ ..|..|. .+-.-+|-.|++.=++..+
T Consensus 76 ~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~ 155 (294)
T PRK14187 76 SSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTIT 155 (294)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhC
Confidence 56777777774 54 366654222223333333321 111 1222332 2345678888999999999
Q ss_pred CCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCc
Q 007939 316 LSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~ 394 (584)
.+++. ++++++|.+ ..|.-+|.||.. .| ..+.+++|+
T Consensus 156 i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~--------------------------- 193 (294)
T PRK14187 156 RNLSG---SDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA--------------------------- 193 (294)
T ss_pred CCCCC---CEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC---------------------------
Confidence 99988 999999975 578888887754 23 246677663
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 395 ~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-+.+.++.++.++|+.
T Consensus 194 --T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 194 --TRDLADYCSK--ADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred --CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1347888888 999999999999999999884
No 102
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=85.51 E-value=5.6 Score=45.51 Aligned_cols=157 Identities=21% Similarity=0.243 Sum_probs=97.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccccc--CC-CCCChhhhccccccCCcCCcccCCC-
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK--ER-KNLDPAAAPFAKDPGDFMGLREGAS- 399 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~--~r-~~l~~~k~~fA~~~~~~~~~~~~~~- 399 (584)
--++|+|+|..|+|||.-+.. .|+ ++.||+++-+-.- +| .+|=+--..|+...+ -+
T Consensus 13 ~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e--------~~l 72 (532)
T COG0578 13 FDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQYE--------FSL 72 (532)
T ss_pred CCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhhcc--------hHH
Confidence 679999999999999988765 477 4889998876532 33 234433344544321 12
Q ss_pred HHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCC--CCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCccc
Q 007939 400 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDS--VKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVD 477 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~--erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~ 477 (584)
..|+++. .+++..+|- |+ +.|.+||..+=
T Consensus 73 vrEal~E-----------------r~vL~~~AP-H~v~p~~~~lp~~~~------------------------------- 103 (532)
T COG0578 73 VREALAE-----------------REVLLRIAP-HLVEPLPFLLPHLPG------------------------------- 103 (532)
T ss_pred HHHHHHH-----------------HHHHHHhCc-cccccCcCeEeccCC-------------------------------
Confidence 4455544 577777753 33 34445544321
Q ss_pred cCCCeeeeccCccccccchhhHHHHHHhCC-ccc--CHHHHHHHHHHHhccCCCCCCCCCccccCCCCcccchHHHHHHH
Q 007939 478 LGNGKIGHVNQANNMYLFPGIGLGTLLSGA-RFI--TDGMLQQAAECLASYMTDEEIPKGILYPSIDSIRDITAEVGAAV 554 (584)
Q Consensus 478 ~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a-~~I--td~m~~aAA~alA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aV 554 (584)
.---.+++.|+.+...+++. +.. +..+..+++..+.-.+.++-+..+..||.-.-- - .+...++
T Consensus 104 ----------~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vd--d-aRLv~~~ 170 (532)
T COG0578 104 ----------LRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVD--D-ARLVAAN 170 (532)
T ss_pred ----------cccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceec--h-HHHHHHH
Confidence 00135788999999999993 233 222223356666666666666557888876542 2 3667789
Q ss_pred HHHHHHcC
Q 007939 555 LRAAVEED 562 (584)
Q Consensus 555 a~~A~~~g 562 (584)
++.|.+.|
T Consensus 171 a~~A~~~G 178 (532)
T COG0578 171 ARDAAEHG 178 (532)
T ss_pred HHHHHhcc
Confidence 99999888
No 103
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.44 E-value=3 Score=47.45 Aligned_cols=122 Identities=19% Similarity=0.278 Sum_probs=62.3
Q ss_pred CcchhHHHHHHHHHHHHHHhCC--CCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccccc
Q 007939 295 DIQGTAGVALAGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (584)
Q Consensus 295 DiQGTaaV~LAgll~Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~ 372 (584)
-|-|-.+|..|+-.-.-..+|. .+......|++|+|+|.+|+..+..+... |- +++.+|.+.-...
T Consensus 134 ~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rle 201 (511)
T TIGR00561 134 NIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVKE 201 (511)
T ss_pred HHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHH
Confidence 4556666655543322222221 11112227999999999998887766553 31 4777777643110
Q ss_pred CCCCCChh------------hhccccccCC-cCCcccCCCHHHHhcccCCcEEEeecCCCC-----CCCHHHHHHhh
Q 007939 373 ERKNLDPA------------AAPFAKDPGD-FMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMR 431 (584)
Q Consensus 373 ~r~~l~~~------------k~~fA~~~~~-~~~~~~~~~L~evV~~vkptvLIG~S~~~g-----~Fteevv~~M~ 431 (584)
--..+... ..-||+...+ +. ..+..-+.|.++. .|++|++.-++| +.|+++|+.|.
T Consensus 202 ~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~-~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MK 275 (511)
T TIGR00561 202 QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFI-AAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMK 275 (511)
T ss_pred HHHHcCCeEEeccccccccccccceeecCHHHH-HHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCC
Confidence 00001000 0112221110 00 0011125555666 999999984444 59999999994
No 104
>PRK08374 homoserine dehydrogenase; Provisional
Probab=85.33 E-value=5.2 Score=42.82 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=65.1
Q ss_pred ceEEEeCcchhhHHHHHHHHH---HHHHHcCCChhhhcCcEEEEecCcccccCCC-CCC---hhhhccccccCCcCC--c
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQ---AAARMAGNNDAFARNKFFLLDKDGLITKERK-NLD---PAAAPFAKDPGDFMG--L 394 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~---~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~-~l~---~~k~~fA~~~~~~~~--~ 394 (584)
.+|.++|.|..|.+++++|.+ .+.++.|... +=+-+.||+|-+...+. +++ ++++.+.... .|.. .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~-~~~~~~~ 77 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS-NWGNDYE 77 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchh-hcccccc
Confidence 689999999999999999987 2333345431 12445699998876542 222 2222222110 1100 0
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 395 ~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
....++.|.++...+||+|-+++ +... .++++..-+ +..++|.
T Consensus 78 ~~~~~~~ell~~~~~DVvVd~t~-~~~a-~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 78 VYNFSPEEIVEEIDADIVVDVTN-DKNA-HEWHLEALK--EGKSVVT 120 (336)
T ss_pred ccCCCHHHHHhcCCCCEEEECCC-cHHH-HHHHHHHHh--hCCcEEE
Confidence 01137889998788999999985 3333 444444322 5688885
No 105
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.33 E-value=2 Score=45.60 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeC-cchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~G-AGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
-.-+|-.|++.=++..+.+++. ++++|+| .|..|..+|.+|... |. .+++++++
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~G---k~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r---------- 191 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSG---LNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR---------- 191 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCC---CEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC----------
Confidence 3466788888888999998888 9999999 999999999999753 43 46666432
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHH
Q 007939 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVL 427 (584)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv 427 (584)
..+|.|+++. .|++|-+-+.++.++++++
T Consensus 192 -------------------T~~l~e~~~~--ADIVIsavg~~~~v~~~~l 220 (296)
T PRK14188 192 -------------------TRDLPAVCRR--ADILVAAVGRPEMVKGDWI 220 (296)
T ss_pred -------------------CCCHHHHHhc--CCEEEEecCChhhcchhee
Confidence 0237788877 8999988887887777663
No 106
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=85.16 E-value=0.86 Score=50.72 Aligned_cols=131 Identities=23% Similarity=0.297 Sum_probs=82.2
Q ss_pred CCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCC-CChhhhccccc-cCCcCCcccCCC
Q 007939 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKD-PGDFMGLREGAS 399 (584)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~-l~~~k~~fA~~-~~~~~~~~~~~~ 399 (584)
++.||+|+||||. .-++++...+.+.+.++. +.|||+|-+ .+|.+ +-..-+.+.+. ..++. .....+
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~k-v~~ttd 70 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVK-VEATTD 70 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEecC
Confidence 4589999999998 578888888876777775 789999963 33322 11111223222 11111 123478
Q ss_pred HHHHhcccCCcEEE---------------------ee-----cCCCCCCC--------HHHHHHhhhcCCCCCeEEecCC
Q 007939 400 LLEVVRKVKPHVLL---------------------GL-----SGVGGVFN--------EEVLKAMRESDSVKPAIFAMSN 445 (584)
Q Consensus 400 L~evV~~vkptvLI---------------------G~-----S~~~g~Ft--------eevv~~M~~~~~erPIIFaLSN 445 (584)
+.||++. +|..| |+ .+++|.|. -|+++.| ++.|+.--++=.+|
T Consensus 71 ~~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m-~~~~P~Aw~lNytN 147 (442)
T COG1486 71 RREALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDM-EKVCPNAWMLNYTN 147 (442)
T ss_pred HHHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHH-HHhCCCceEEeccC
Confidence 9999988 66665 11 12223222 5889999 45999999999999
Q ss_pred CCCccCCCHHHHhcccCC-cEEEEe
Q 007939 446 PTMNAECTAADAFKHAGE-NIVFAS 469 (584)
Q Consensus 446 Pt~~aE~tpeda~~wT~G-rai~As 469 (584)
|.. ++| +-.++|+.. |.|=-+
T Consensus 148 P~~--~vT-eAv~r~~~~~K~VGlC 169 (442)
T COG1486 148 PAA--IVT-EAVRRLYPKIKIVGLC 169 (442)
T ss_pred hHH--HHH-HHHHHhCCCCcEEeeC
Confidence 987 554 455666654 444333
No 107
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.08 E-value=2.6 Score=43.08 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=56.9
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCC--cCCcccCCCHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMGLREGASLLE 402 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~--~~~~~~~~~L~e 402 (584)
||.|+|+|+.|..+|..|... | .+++++++ +--.+ .+.......-....+ .. .....+..+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~---~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 64 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAK---ALRERGLVIRSDHGDAVVP-GPVITDPEE 64 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHH---HHHhCCeEEEeCCCeEEec-ceeecCHHH
Confidence 799999999999999888653 3 35888887 21100 010000000000000 00 001234566
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
+++. +|++|=+. +....+++++.++....+..+|+.+.|.-.
T Consensus 65 ~~~~--~d~vilav--k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 65 LTGP--FDLVILAV--KAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred ccCC--CCEEEEEe--cccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 5544 77665332 223568999988654456678888999864
No 108
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=84.97 E-value=0.54 Score=43.99 Aligned_cols=113 Identities=22% Similarity=0.351 Sum_probs=66.6
Q ss_pred eEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC-cccccCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007939 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~-GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
||.|+|| |..|..+|-+|+.. |+- +.|.|+|.+ ......--+|.+...+.-++. .-..+..+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l~-----~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~------~i~~~~~~ 65 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GLA-----DEIVLIDINEDKAEGEALDLSHASAPLPSPV------RITSGDYE 65 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TTS-----SEEEEEESSHHHHHHHHHHHHHHHHGSTEEE------EEEESSGG
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CCC-----CceEEeccCcccceeeehhhhhhhhhccccc------cccccccc
Confidence 8999999 99999999888763 553 459999996 211110012332221221111 01234566
Q ss_pred HhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc
Q 007939 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~---g~-----------Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~ 459 (584)
.+++ .|++|=+.+.+ |- +-+++.+.+.+ ++...|++-.|||.. ...+-+++
T Consensus 66 ~~~~--aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~-~~p~~~vivvtNPvd---~~t~~~~~ 130 (141)
T PF00056_consen 66 ALKD--ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAK-YAPDAIVIVVTNPVD---VMTYVAQK 130 (141)
T ss_dssp GGTT--ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHH-HSTTSEEEE-SSSHH---HHHHHHHH
T ss_pred cccc--ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHH-hCCccEEEEeCCcHH---HHHHHHHH
Confidence 6776 88888444432 21 22355666644 789999999999964 55555554
No 109
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=84.90 E-value=2.9 Score=40.23 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=72.6
Q ss_pred HhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcC
Q 007939 313 AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFM 392 (584)
Q Consensus 313 ~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~ 392 (584)
..+..|.. +++.|+|.|..|..+|+++....+ +++.+|+..- +.. .+....
T Consensus 29 ~~~~~l~g---~tvgIiG~G~IG~~vA~~l~~fG~------------~V~~~d~~~~---------~~~-~~~~~~---- 79 (178)
T PF02826_consen 29 FPGRELRG---KTVGIIGYGRIGRAVARRLKAFGM------------RVIGYDRSPK---------PEE-GADEFG---- 79 (178)
T ss_dssp TTBS-STT---SEEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSCH---------HHH-HHHHTT----
T ss_pred CCccccCC---CEEEEEEEcCCcCeEeeeeecCCc------------eeEEecccCC---------hhh-hccccc----
Confidence 34455555 999999999999999999987644 6999998522 111 111110
Q ss_pred CcccCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007939 393 GLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA 468 (584)
Q Consensus 393 ~~~~~~~L~evV~~vkptvLIG~S----~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~A 468 (584)
....+|.|+++. .|+++=.- ...+.|+++.++.|. +.-++.-.|.-.---|..--+|++ +|+.--|
T Consensus 80 --~~~~~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk----~ga~lvN~aRG~~vde~aL~~aL~--~g~i~ga 149 (178)
T PF02826_consen 80 --VEYVSLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK----PGAVLVNVARGELVDEDALLDALE--SGKIAGA 149 (178)
T ss_dssp --EEESSHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST----TTEEEEESSSGGGB-HHHHHHHHH--TTSEEEE
T ss_pred --ceeeehhhhcch--hhhhhhhhccccccceeeeeeeeeccc----cceEEEeccchhhhhhhHHHHHHh--hccCceE
Confidence 023579999988 89887432 124899999999994 466777666544322333333434 5665533
No 110
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.88 E-value=0.91 Score=48.42 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=66.0
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---ccCC-----CHHHHhcccCCcEEEEeCCC
Q 007939 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAEC-----TAADAFKHAGENIVFASGSP 472 (584)
Q Consensus 401 ~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~---~aE~-----tpeda~~wT~Grai~AsGSP 472 (584)
.++-+..+|+++|..||. +.-..++-..+. +-+|=|+.=.-||.. +.|+ |.++++++.. . |+..-=
T Consensus 103 ~~l~~~~~~~aIlaSnTS-~l~~s~la~~~~--~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~--~-f~~~lG 176 (321)
T PRK07066 103 ERISRAAKPDAIIASSTS-GLLPTDFYARAT--HPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM--G-IYRALG 176 (321)
T ss_pred HHHHHhCCCCeEEEECCC-ccCHHHHHHhcC--CcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH--H-HHHHcC
Confidence 355566788999988875 555555555541 445657777888863 4343 4344433321 1 111111
Q ss_pred CCccccCCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHHH
Q 007939 473 FENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (584)
Q Consensus 473 f~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~ 520 (584)
..||.. +...||-.=|-..+|-+-=+.-+..---.|.+-+-+|-+
T Consensus 177 k~pV~v---~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~ 221 (321)
T PRK07066 177 MRPLHV---RKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIR 221 (321)
T ss_pred CEeEec---CCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345554 236788888888888877777776665566666666644
No 111
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.65 E-value=2.9 Score=43.09 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=26.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----GF-------QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 5899999999999999988653 42 58888874
No 112
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.56 E-value=4.6 Score=43.08 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=74.0
Q ss_pred eEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc--cccCC-CCCChhhhccccccCCcCCcccCCCH
Q 007939 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKER-KNLDPAAAPFAKDPGDFMGLREGASL 400 (584)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL--i~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L 400 (584)
||.|+|| |..|..+|..|+. .|+-.|+-...+.|+|.+.- ..++. -+|.+...++.+.. . -..+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~-~-----i~~~~ 70 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGV-V-----ITTDP 70 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCc-E-----EecCh
Confidence 7999999 9999999886664 34432223346999998642 11111 24444433343221 1 12457
Q ss_pred HHHhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcC-CCCCeEEecCCCCCccCCCHHHHhccc
Q 007939 401 LEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESD-SVKPAIFAMSNPTMNAECTAADAFKHA 461 (584)
Q Consensus 401 ~evV~~vkptvLIG~S~~---~g~-----------Fteevv~~M~~~~-~erPIIFaLSNPt~~aE~tpeda~~wT 461 (584)
.|.+++ .|++|=+.+. +|- .-+++++.|.+ + ++.-||+-.|||- .+..--+++++
T Consensus 71 ~~~~~~--aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPv---D~~t~~~~k~s 140 (323)
T cd00704 71 EEAFKD--VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNK-VAKPTVKVLVVGNPA---NTNALIALKNA 140 (323)
T ss_pred HHHhCC--CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHH-hCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 788988 8887745444 332 12567777754 7 4899999999998 35555666654
No 113
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.40 E-value=3 Score=44.21 Aligned_cols=131 Identities=14% Similarity=0.185 Sum_probs=88.1
Q ss_pred HHHHHHHHHHC--CCe---eeEeccCCCChHHHHHHHH---hhc--c------CccccCcchhHHHHHHHHHHHHHHhCC
Q 007939 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERY---RKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (584)
Q Consensus 253 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ry---r~~--~------~~FNDDiQGTaaV~LAgll~Alr~~g~ 316 (584)
+|+.+.+.++- |++ ++|+==.+.-+..++++.- +|- + ..|..+-.+-.-+|-+|++.=++..+.
T Consensus 76 ~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y~i 155 (288)
T PRK14171 76 NDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKYEP 155 (288)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56667777764 543 6775422233333343332 221 1 223233244567788889999999999
Q ss_pred CCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
+++. .+++++|-+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 156 ~l~G---K~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~---------------------------- 192 (288)
T PRK14171 156 NLTG---KNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK---------------------------- 192 (288)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC----------------------------
Confidence 9888 999999975 578888888754 232 36666653
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-+.+.++.+++++|+.
T Consensus 193 -T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 223 (288)
T PRK14171 193 -THNLSSITSK--ADIVVAAIGSPLKLTAEYFNP 223 (288)
T ss_pred -CCCHHHHHhh--CCEEEEccCCCCccCHHHcCC
Confidence 1358888888 999999999999999999884
No 114
>PRK15076 alpha-galactosidase; Provisional
Probab=84.39 E-value=1.5 Score=48.50 Aligned_cols=134 Identities=15% Similarity=0.110 Sum_probs=74.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccccc-CCCCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~-~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
.||.|+|||+.| .+..++..+....++. -..++|+|.+-=..+ ...-+......+ ...+. .....++.+
T Consensus 2 ~KIaIIGaGsvg--~~~~~~~~i~~~~~l~----~~evvLvDid~er~~~~~~l~~~~~~~~---~~~~~-i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTV--FTKNLLGDILSVPALR----DAEIALMDIDPERLEESEIVARKLAESL---GASAK-ITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHH--hHHHHHHHHhhCccCC----CCEEEEECCCHHHHHHHHHHHHHHHHhc---CCCeE-EEEECCHHH
Confidence 589999999974 4444433332123332 247999997521000 000011111111 11110 112467888
Q ss_pred HhcccCCcEEEeecCCCCC-------------------------------------CCHHHHHHhhhcCCCCCeEEecCC
Q 007939 403 VVRKVKPHVLLGLSGVGGV-------------------------------------FNEEVLKAMRESDSVKPAIFAMSN 445 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~g~-------------------------------------Fteevv~~M~~~~~erPIIFaLSN 445 (584)
+++. .|++|=..+++|. .=.++++.|. ++|+.-+|+-.||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~-~~~p~a~iin~tN 148 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDME-EVCPDALLLNYVN 148 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHH-HHCCCeEEEEcCC
Confidence 8887 7877644444321 1146777774 4899999999999
Q ss_pred CCCccCCCHHHHhcccCCcEEEEeC-CCCC
Q 007939 446 PTMNAECTAADAFKHAGENIVFASG-SPFE 474 (584)
Q Consensus 446 Pt~~aE~tpeda~~wT~Grai~AsG-SPf~ 474 (584)
|.. +..+-++.++. .-+|.+| +|+.
T Consensus 149 P~d---ivt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 149 PMA---MNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred hHH---HHHHHHhcCCC-CCEEEECCCHHH
Confidence 995 44444556754 4577888 6754
No 115
>PRK08223 hypothetical protein; Validated
Probab=84.36 E-value=0.56 Score=49.48 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=44.3
Q ss_pred HHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhc
Q 007939 279 FETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR 358 (584)
Q Consensus 279 f~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~ 358 (584)
|..-++|..++..|..+-| .+|++ .||+|+|+|..|.-+|..|+.+.+
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~---s~VlIvG~GGLGs~va~~LA~aGV----------- 51 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRN---SRVAIAGLGGVGGIHLLTLARLGI----------- 51 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhc---CCEEEECCCHHHHHHHHHHHHhCC-----------
Confidence 5566777766655554433 45666 999999999999999998888755
Q ss_pred CcEEEEecCc
Q 007939 359 NKFFLLDKDG 368 (584)
Q Consensus 359 ~~i~lvDs~G 368 (584)
.+|.++|.+=
T Consensus 52 G~i~lvD~D~ 61 (287)
T PRK08223 52 GKFTIADFDV 61 (287)
T ss_pred CeEEEEeCCC
Confidence 6899999873
No 116
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=84.28 E-value=3 Score=44.42 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=87.6
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh---hc--c------CccccC-cchhHHHHHHHHHHHHHHhC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR---KR--F------CMFNDD-IQGTAGVALAGLLGTVRAQG 315 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr---~~--~------~~FNDD-iQGTaaV~LAgll~Alr~~g 315 (584)
+|+.+.+.++- |+ .++|+==.+.-+..++++... |- + ..|.++ ..+-.-+|-+|++.=++..|
T Consensus 83 ~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~ 162 (299)
T PLN02516 83 AELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSG 162 (299)
T ss_pred HHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhC
Confidence 56666777664 54 367764333333334443332 11 1 123221 23445677888999999999
Q ss_pred CCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCc
Q 007939 316 LSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~ 394 (584)
.+++. ++++++|-+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 163 i~l~G---k~vvVIGRS~iVGkPla~lL~~-----~~A-------TVtvchs~--------------------------- 200 (299)
T PLN02516 163 IPIKG---KKAVVVGRSNIVGLPVSLLLLK-----ADA-------TVTVVHSR--------------------------- 200 (299)
T ss_pred CCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC---------------------------
Confidence 98888 999999975 567778877754 232 47777663
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 395 ~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
.++|.+.+++ +|++|-+.+.++.|+.|+|+.
T Consensus 201 --T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk~ 231 (299)
T PLN02516 201 --TPDPESIVRE--ADIVIAAAGQAMMIKGDWIKP 231 (299)
T ss_pred --CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1358888888 999999999999999999984
No 117
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.20 E-value=3 Score=44.04 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=86.5
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hccCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~LAgll~Alr~~g~~ 317 (584)
+||.+.+.++- |+ .++|+==.+.-+-.++++... +.+=.||..- .+-.-+|-.|++.-++..|.+
T Consensus 76 ~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i~ 155 (284)
T PRK14193 76 EELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLNEPAPLPCTPRGIVHLLRRYDVE 155 (284)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 56777777774 54 366653222223333333221 1222222211 223467888899999999999
Q ss_pred CCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
++. ++++++|.+ ..|.-+|.||..-. .|. .+.++.|+
T Consensus 156 l~G---k~vvViGrS~~VGkPla~lL~~~~---~~a-------tVtvchs~----------------------------- 193 (284)
T PRK14193 156 LAG---AHVVVIGRGVTVGRPIGLLLTRRS---ENA-------TVTLCHTG----------------------------- 193 (284)
T ss_pred CCC---CEEEEECCCCcchHHHHHHHhhcc---CCC-------EEEEeCCC-----------------------------
Confidence 888 999999975 67888888875410 232 35666552
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-+.+.++.++.++|+.
T Consensus 194 T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik~ 224 (284)
T PRK14193 194 TRDLAAHTRR--ADIIVAAAGVAHLVTADMVKP 224 (284)
T ss_pred CCCHHHHHHh--CCEEEEecCCcCccCHHHcCC
Confidence 1358888988 999999999999999998884
No 118
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=84.15 E-value=1.7 Score=45.31 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=39.8
Q ss_pred cCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 289 ~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+.=||-|-. |++.+++..+.+. . .+++++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~~--------Gf~~~L~~~~~~~-~---~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDYI--------AIAKLLASYQVPP-D---LVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred EEEEecCHH--------HHHHHHHhcCCCC-C---CeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 445555654 4777887766643 4 699999999998888776654 354 579999984
No 119
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.12 E-value=3.1 Score=43.88 Aligned_cols=131 Identities=14% Similarity=0.192 Sum_probs=86.2
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hccCccccC--------cchhHHHHHHHHHHHHHHhCCC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDD--------IQGTAGVALAGLLGTVRAQGLS 317 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDD--------iQGTaaV~LAgll~Alr~~g~~ 317 (584)
+||.+.++++- |+ .++|+==.+.-+..++++... +.+=.||.- ..+-.-+|-.|++.=++..+.+
T Consensus 74 ~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 153 (282)
T PRK14169 74 ADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWANEPTVVASTPYGIMALLDAYDID 153 (282)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcCCCCCCCCCHHHHHHHHHHhCCC
Confidence 46666777663 53 366654223333334443322 112112111 1234567888899999999999
Q ss_pred CCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
++. ++++++|.+ ..|.-+|.||.. .|. .+.++.|+
T Consensus 154 l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~----------------------------- 189 (282)
T PRK14169 154 VAG---KRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK----------------------------- 189 (282)
T ss_pred CCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC-----------------------------
Confidence 988 999999975 578888888754 232 35655543
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-+.+.|+.|+.++|+.
T Consensus 190 T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk~ 220 (282)
T PRK14169 190 TRNLKQLTKE--ADILVVAVGVPHFIGADAVKP 220 (282)
T ss_pred CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888888 999999999999999998884
No 120
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.04 E-value=8.2 Score=40.94 Aligned_cols=135 Identities=16% Similarity=0.262 Sum_probs=89.7
Q ss_pred HHHHHHHHHHC--CCe---eeEeccCCCChHHHHHHHHhh--cc---------CccccCcchhHHHHHHHHHHHHHHhCC
Q 007939 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYRK--RF---------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (584)
Q Consensus 253 defv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr~--~~---------~~FNDDiQGTaaV~LAgll~Alr~~g~ 316 (584)
+|+.+.+.++- |++ ++|+==.+.-+..++++...- .+ ..|..|-.+-.-+|-.|++.=++..|.
T Consensus 70 ~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~~~~~~PcTp~avi~lL~~~~i 149 (287)
T PRK14181 70 SDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGETDGFIPCTPAGIIELLKYYEI 149 (287)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCCCCCCCCCCHHHHHHHHHHhCC
Confidence 56777777774 543 777643334444445444321 12 223344334567788899999999999
Q ss_pred CCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
+++. ++++++|-+ ..|.-+|.||... |-+. . ..+.++.|+
T Consensus 150 ~l~G---k~vvViGrS~iVGkPla~lL~~~-----~~~~-~--AtVtvchs~---------------------------- 190 (287)
T PRK14181 150 PLHG---RHVAIVGRSNIVGKPLAALLMQK-----HPDT-N--ATVTLLHSQ---------------------------- 190 (287)
T ss_pred CCCC---CEEEEECCCccchHHHHHHHHhC-----cCCC-C--CEEEEeCCC----------------------------
Confidence 9988 999999975 5688888877542 1100 0 135554442
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-+.+.++.+++|+|+.
T Consensus 191 -T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 191 -SENLTEILKT--ADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred -CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1458888888 999999999999999999884
No 121
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=84.03 E-value=6.6 Score=42.67 Aligned_cols=131 Identities=11% Similarity=0.111 Sum_probs=72.1
Q ss_pred ccccccCChhhHHHHHhcCCCCCceEE-EEecCceeeccCCCCCCcccccchhhhhhh-----hhcCCCCCCceeEEeec
Q 007939 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLDVYV-----AAAGINPQRILPVMLDV 222 (584)
Q Consensus 149 Glyis~~D~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGKl~LY~-----a~gGI~P~~~LPV~LDv 222 (584)
|. ++..|...+.++|+.. +++++ +++|+ .+--+-..|.+.+-+..+....+. .--||..-. +|.. +
T Consensus 162 G~-~~~~d~~el~~lL~~~---Gi~v~~~~~d~-~~~~~~~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~-~~~P--~ 233 (396)
T cd01979 162 GS-LPDIVEDQLRRELEQL---GIPVVGFLPPR-RYTDLPVIGPGTYVLGIQPFLSRTATTLMRRRKCKLLS-APFP--I 233 (396)
T ss_pred Ee-CCcchHHHHHHHHHHc---CCeEEEEeCCC-ChHHhhccCcceEEEEeChhHHHHHHHHHHhcCCCccc-CCcC--c
Confidence 55 3556667788888865 57776 77874 455555555554444333322221 123454222 1211 1
Q ss_pred cCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCeeeEeccCCCChHHHHHHHHhhccCccccCcchhHHH
Q 007939 223 GTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGV 302 (584)
Q Consensus 223 GTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV 302 (584)
|- +-.++|+..+.+.+-. .-+.+++.+.+
T Consensus 234 G~-------------------------~~t~~~l~~la~~~g~------------~~~~i~~e~~~-------------- 262 (396)
T cd01979 234 GP-------------------------DGTRAWLEAICSAFGI------------FPSVLAEREAR-------------- 262 (396)
T ss_pred Ch-------------------------HHHHHHHHHHHHHhCC------------ChhHHHHHHHH--------------
Confidence 21 1267777777776631 01123332221
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHH
Q 007939 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 303 ~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~ 345 (584)
+.-++......|.. .|++++|-+.-..++++.+.+.
T Consensus 263 ----~~~~l~~~~~~l~G---krv~i~g~~~~~~~la~~L~el 298 (396)
T cd01979 263 ----AWRALEPYLDLLRG---KSIFFMGDNLLEIPLARFLTRC 298 (396)
T ss_pred ----HHHHHHHHHHhhcC---CEEEEECCchHHHHHHHHHHHC
Confidence 33444445555666 8999999988888998888763
No 122
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.92 E-value=3.1 Score=44.18 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCC
Q 007939 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (584)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~ 376 (584)
+-.-+|-+|++.=++..|.+++. ++++++|.+ ..|.-+|.||.. .|+. ....+.++.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~--------- 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSG---AEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR--------- 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC---------
Confidence 44567788899999999999988 999999975 577788877754 2211 00245555543
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
.++|.+.+++ +|++|-+.+.++.++.++|+.
T Consensus 199 --------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik~ 229 (297)
T PRK14168 199 --------------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIKP 229 (297)
T ss_pred --------------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1358888888 999999999999999999884
No 123
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=83.75 E-value=4.4 Score=42.44 Aligned_cols=127 Identities=19% Similarity=0.322 Sum_probs=75.4
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
||.|+|+|.+|..+|..++. .|+. .+|+++|++-=..++- .+|.+.. .+...... -...+.. .
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~~-----~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~----i~~~~~~-~ 65 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGIA-----DELVLIDINEEKAEGEALDLEDAL-AFLPSPVK----IKAGDYS-D 65 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHhHhhHHHHh-hccCCCeE----EEcCCHH-H
Confidence 89999999999999988754 3542 4799999852111111 1222211 11111000 0112333 4
Q ss_pred hcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcEEE
Q 007939 404 VRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIVF 467 (584)
Q Consensus 404 V~~vkptvLIG~S~~~---g~-----------Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~--Grai~ 467 (584)
+++ .|++|=+.+.+ |- .=+++.+.|.+ ++..-+|+-.|||.. +...-+++++. -+-+|
T Consensus 66 l~~--aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~-~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~ 139 (306)
T cd05291 66 CKD--ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKA-SGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVI 139 (306)
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEe
Confidence 555 89998777654 21 11566777754 888999999999995 66666666541 13477
Q ss_pred EeCCCC
Q 007939 468 ASGSPF 473 (584)
Q Consensus 468 AsGSPf 473 (584)
.+|.-.
T Consensus 140 g~gt~L 145 (306)
T cd05291 140 GTGTSL 145 (306)
T ss_pred eccchH
Confidence 887553
No 124
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=83.50 E-value=1.8 Score=48.07 Aligned_cols=134 Identities=21% Similarity=0.219 Sum_probs=76.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHH-cCCChhhhcCcEEEEecCcccccCCC-CCChhhhccccc-cCCcCCcccCCCH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARM-AGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKD-PGDFMGLREGASL 400 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~-~Gls~eeA~~~i~lvDs~GLi~~~r~-~l~~~k~~fA~~-~~~~~~~~~~~~L 400 (584)
.||+|+||||+ -+-.|+..+... ..++. +.|+|+|-+. +|- .+...-+.+++. ..++. .....++
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~~----~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~-v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFPL----RELVLYDIDA----ERQEKVAEAVKILFKENYPEIK-FVYTTDP 68 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCCC----CEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeE-EEEECCH
Confidence 38999999996 555555555523 34442 6899999753 221 111111222222 11111 1234779
Q ss_pred HHHhcccCCcEEE---------------------eec-----CCCCC--------CCHHHHHHhhhcCCCCCeEEecCCC
Q 007939 401 LEVVRKVKPHVLL---------------------GLS-----GVGGV--------FNEEVLKAMRESDSVKPAIFAMSNP 446 (584)
Q Consensus 401 ~evV~~vkptvLI---------------------G~S-----~~~g~--------Fteevv~~M~~~~~erPIIFaLSNP 446 (584)
.||++. +|.+| |+- +.+|. .-.++++.|. ++|..-+++-.|||
T Consensus 69 ~eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~-~~~pda~lin~tNP 145 (437)
T cd05298 69 EEAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIE-KYSPDAWILNYSNP 145 (437)
T ss_pred HHHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHH-HHCCCeEEEEecCc
Confidence 999988 77776 221 22232 2257788885 48999999999999
Q ss_pred CCccCCCHHHHhcccCCcEEEEeCCCCC
Q 007939 447 TMNAECTAADAFKHAGENIVFASGSPFE 474 (584)
Q Consensus 447 t~~aE~tpeda~~wT~Grai~AsGSPf~ 474 (584)
.. .+|-.---.++.-|+|=-+-+|+.
T Consensus 146 ~~--~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 146 AA--IVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred HH--HHHHHHHHHCCCCCEEEECCcHHH
Confidence 96 444332212445566555555654
No 125
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=83.49 E-value=1.8 Score=47.57 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=71.7
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhcccccc-CCcCCcccCCCHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP-GDFMGLREGASLLEV 403 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~-~~~~~~~~~~~L~ev 403 (584)
||.|+|||+.|.+.+- +..+.....+ +-.+++|+|.+-=..+ .+...-+.++... ..+ ......++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did~e~l~---~~~~~~~~~~~~~~~~~-~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDIDEERLE---TVEILAKKIVEELGAPL-KIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCCHHHHH---HHHHHHHHHHHhcCCCe-EEEEeCCHHHH
Confidence 7999999998877652 1112101111 2247999997421110 0110001111110 000 01124678999
Q ss_pred hcccCCcEEEeecCCC---------------CCCC---------------------HHHHHHhhhcCCCCCeEEecCCCC
Q 007939 404 VRKVKPHVLLGLSGVG---------------GVFN---------------------EEVLKAMRESDSVKPAIFAMSNPT 447 (584)
Q Consensus 404 V~~vkptvLIG~S~~~---------------g~Ft---------------------eevv~~M~~~~~erPIIFaLSNPt 447 (584)
++. .|++|=.-..+ |.|. .++.+.|. ++|++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~-~~~p~a~~i~~tNPv 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIE-ELCPDAWLLNYANPM 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHH-HHCCCCEEEEcCChH
Confidence 987 88877443321 1121 26666664 377899999999999
Q ss_pred CccCCCHHHHhcccCCcEEEEeC-CC
Q 007939 448 MNAECTAADAFKHAGENIVFASG-SP 472 (584)
Q Consensus 448 ~~aE~tpeda~~wT~Grai~AsG-SP 472 (584)
. +..+-+++.++ .-++.+| +|
T Consensus 149 ~---i~t~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 A---ELTWALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred H---HHHHHHHHhCC-CCEEEECCcH
Confidence 6 45555667776 5567777 54
No 126
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.36 E-value=3.6 Score=43.46 Aligned_cols=131 Identities=17% Similarity=0.220 Sum_probs=88.1
Q ss_pred HHHHHHHHHHC--CC---eeeEec---cCCCChHHHHHHHHhhc--c------CccccCcchhHHHHHHHHHHHHHHhCC
Q 007939 253 DEFMEAVHARW--PK---AIVQFE---DFQMKWAFETLERYRKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfE---Df~~~nAf~lL~ryr~~--~------~~FNDDiQGTaaV~LAgll~Alr~~g~ 316 (584)
+||.+.+.++- |+ .++|+= ++.....++.++-.+|- + ..|..|..+-.-+|-.|++.=++..|.
T Consensus 75 ~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i 154 (282)
T PRK14180 75 SELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI 154 (282)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC
Confidence 56777777773 54 366653 44433333333322221 1 122222234467788899999999999
Q ss_pred CCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
+++. .+++++|.+ ..|.-+|.||.. .|. .+.+++|+
T Consensus 155 ~l~G---k~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~---------------------------- 191 (282)
T PRK14180 155 KTEG---AYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF---------------------------- 191 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC----------------------------
Confidence 9999 999999975 578888888754 232 46666553
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
.++|.+.+++ +|++|-+.+.++.|++++|+.
T Consensus 192 -T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk~ 222 (282)
T PRK14180 192 -TTDLKSHTTK--ADILIVAVGKPNFITADMVKE 222 (282)
T ss_pred -CCCHHHHhhh--cCEEEEccCCcCcCCHHHcCC
Confidence 1347777877 999999999999999988873
No 127
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.20 E-value=3.7 Score=43.36 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=85.4
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHhh--cc---------CccccCcch-hHHHHHHHHHHHHHHhC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYRK--RF---------CMFNDDIQG-TAGVALAGLLGTVRAQG 315 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr~--~~---------~~FNDDiQG-TaaV~LAgll~Alr~~g 315 (584)
+|+.+.++++- |+ .++|+==.+.-|..++++...- .+ ..|..+ .+ -.-+|-.|++.=++..+
T Consensus 74 ~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~~PcTp~avi~ll~~~~ 152 (282)
T PRK14182 74 AELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSIGI-AGVPRPCTPAGVMRMLDEAR 152 (282)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHhCCC-CCCCCCCCHHHHHHHHHHhC
Confidence 45666666663 43 3666543334444445444321 11 111111 12 24667888999999999
Q ss_pred CCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCc
Q 007939 316 LSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~ 394 (584)
.+++. ++++++|-+ ..|.-+|.||.. .| ..+.+++|+
T Consensus 153 i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~--------------------------- 190 (282)
T PRK14182 153 VDPKG---KRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR--------------------------- 190 (282)
T ss_pred CCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---------------------------
Confidence 98888 999999975 567788877754 23 235655442
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 395 ~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-..+.++.+++++|+.
T Consensus 191 --T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 191 --TADLAGEVGR--ADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred --CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1358888888 999999999999999999884
No 128
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.14 E-value=4 Score=42.47 Aligned_cols=96 Identities=21% Similarity=0.190 Sum_probs=56.6
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV 404 (584)
+|-|+|.|..|..+|..+... |. +++++|++. + .. .+++.... ....++.|++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~--~~----~~~~~~g~-----~~~~s~~~~~ 54 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----E--AV----DVAGKLGI-----TARHSLEELV 54 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----H--HH----HHHHHCCC-----eecCCHHHHH
Confidence 689999999999999988653 43 577777741 1 11 11211110 1235677877
Q ss_pred cccC-CcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 405 RKVK-PHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 405 ~~vk-ptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
+..+ ++++|= +.......++++..+.....+..+|.=+|+-.+
T Consensus 55 ~~~~~advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 55 SKLEAPRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred HhCCCCCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCCc
Confidence 7643 566652 222333566776665433445678888877444
No 129
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.03 E-value=4.3 Score=42.21 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=56.7
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV 404 (584)
||.|+|.|..|..+|..|... | .+++++|+.. +....++.... ....++.|++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----------~~~~~~~~~g~-----~~~~~~~e~~ 54 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----------EAVEALAEEGA-----TGADSLEELV 54 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----------HHHHHHHHCCC-----eecCCHHHHH
Confidence 799999999999999998663 4 2577788741 11112221110 1124677777
Q ss_pred ccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
+.. +|+++|=+- ..+...++++..+.....+..||+-+|+-.+
T Consensus 55 ~~~~~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~~ 98 (301)
T PRK09599 55 AKLPAPRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSYY 98 (301)
T ss_pred hhcCCCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCCh
Confidence 765 366655322 2344556666655433455678888876443
No 130
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.92 E-value=1 Score=44.98 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=32.1
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|+. .||+++|+|..|..||..|+.+ |+ .+|+++|.+
T Consensus 24 ~~L~~---~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKK---AKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhC---CCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 44566 9999999999999999999765 55 689999997
No 131
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=82.88 E-value=6.7 Score=35.78 Aligned_cols=96 Identities=16% Similarity=0.247 Sum_probs=48.5
Q ss_pred eEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
||+++|+ |-.|-.|++.+.+ +.|+ +=...+|++.=-..+. ++. .++...+ .+.+-..+|.++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~----~~~~------~lv~~v~~~~~~~~g~-d~g----~~~~~~~--~~~~v~~~l~~~ 64 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILE----SPGF------ELVGAVDRKPSAKVGK-DVG----ELAGIGP--LGVPVTDDLEEL 64 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHH----STTE------EEEEEEETTTSTTTTS-BCH----HHCTSST---SSBEBS-HHHH
T ss_pred EEEEECCCCHHHHHHHHHHHh----cCCc------EEEEEEecCCcccccc-hhh----hhhCcCC--cccccchhHHHh
Confidence 8999999 9999999988877 2444 2367788875111111 111 1111000 001123567777
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEec
Q 007939 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM 443 (584)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaL 443 (584)
++. +||+|=.|....+ .+.++...+ +..|+|..=
T Consensus 65 ~~~--~DVvIDfT~p~~~--~~~~~~~~~--~g~~~ViGT 98 (124)
T PF01113_consen 65 LEE--ADVVIDFTNPDAV--YDNLEYALK--HGVPLVIGT 98 (124)
T ss_dssp TTH---SEEEEES-HHHH--HHHHHHHHH--HT-EEEEE-
T ss_pred ccc--CCEEEEcCChHHh--HHHHHHHHh--CCCCEEEEC
Confidence 777 7888777742211 334444332 355665543
No 132
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.83 E-value=3.7 Score=43.46 Aligned_cols=131 Identities=20% Similarity=0.243 Sum_probs=86.6
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hccCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~LAgll~Alr~~g~~ 317 (584)
+||.+.+.++- ++ .++|+==...-+..++++.-. +.+=.||..- .+-.-+|-.|++.=++..+.+
T Consensus 73 ~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 152 (287)
T PRK14173 73 EELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMGGEALEPCTPAGVVRLLKHYGIP 152 (287)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcCCCCCCCCCHHHHHHHHHHcCCC
Confidence 56777777663 43 366754223334444444322 1222222211 123466788889999999999
Q ss_pred CCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
++. .+++++|.+ ..|.-+|.||.. +|. .+.++.|+
T Consensus 153 l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~----------------------------- 188 (287)
T PRK14173 153 LAG---KEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK----------------------------- 188 (287)
T ss_pred CCC---CEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC-----------------------------
Confidence 888 999999975 678888888764 232 46666542
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-+.+.++.+++++|+.
T Consensus 189 T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 219 (287)
T PRK14173 189 TQDLPAVTRR--ADVLVVAVGRPHLITPEMVRP 219 (287)
T ss_pred CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1358888888 999999999999999998873
No 133
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=82.67 E-value=24 Score=37.30 Aligned_cols=163 Identities=16% Similarity=0.218 Sum_probs=101.6
Q ss_pred HHCCCe-eeEeccCCCChHHHHHHHHhhccCccccC---cchhHHHHHHHHHHHHHHh---------C----C-------
Q 007939 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDD---IQGTAGVALAGLLGTVRAQ---------G----L------- 316 (584)
Q Consensus 261 ~~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDD---iQGTaaV~LAgll~Alr~~---------g----~------- 316 (584)
...|+. +|+.-=.+..| ..+-.--+..+.+.|-- -..+|=-+++-+|+..|.. | .
T Consensus 59 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 137 (311)
T PRK08410 59 SQLPNLKLICITATGTNN-VDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHIS 137 (311)
T ss_pred hhCCCCeEEEEccccccc-ccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccC
Confidence 345765 67766666555 33322223447777742 2456777888899888743 1 0
Q ss_pred -CCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 317 -SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 317 -~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
+..+|.++++.|+|-|..|--+|+++..+ |+ +|+.+|+.+- ... ..+
T Consensus 138 ~~~~~L~gktvGIiG~G~IG~~vA~~~~~f-----gm-------~V~~~d~~~~---~~~------~~~----------- 185 (311)
T PRK08410 138 RPLGEIKGKKWGIIGLGTIGKRVAKIAQAF-----GA-------KVVYYSTSGK---NKN------EEY----------- 185 (311)
T ss_pred ccccccCCCEEEEECCCHHHHHHHHHHhhc-----CC-------EEEEECCCcc---ccc------cCc-----------
Confidence 12356669999999999999999988654 33 6888888421 000 001
Q ss_pred cCCCHHHHhcccCCcEEEee----cCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc--ccCCcEE
Q 007939 396 EGASLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK--HAGENIV 466 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~----S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~--wT~Grai 466 (584)
...+|.|+++. .|+++=. ....+.|+++.+..|. +..++.=.|. .++-=|+|+. -.+|+.-
T Consensus 186 ~~~~l~ell~~--sDvv~lh~Plt~~T~~li~~~~~~~Mk----~~a~lIN~aR----G~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 186 ERVSLEELLKT--SDIISIHAPLNEKTKNLIAYKELKLLK----DGAILINVGR----GGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred eeecHHHHhhc--CCEEEEeCCCCchhhcccCHHHHHhCC----CCeEEEECCC----ccccCHHHHHHHHHcCCeE
Confidence 12469999988 8887732 1224889999999994 5667776554 3444443331 1367655
No 134
>PRK13243 glyoxylate reductase; Reviewed
Probab=82.34 E-value=31 Score=36.82 Aligned_cols=198 Identities=22% Similarity=0.183 Sum_probs=112.7
Q ss_pred HCCCe-eeEeccCCCChHHHHHHHHhhccCccccCc---chhHHHHHHHHHHHHHHh---------CC------------
Q 007939 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL------------ 316 (584)
Q Consensus 262 ~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------g~------------ 316 (584)
..|+. .|+.-=.+..| ..+-.--+..+++.|--- +..|=-+++.+|+..|.. |.
T Consensus 64 ~~p~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~ 142 (333)
T PRK13243 64 AAPRLRIVANYAVGYDN-IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLM 142 (333)
T ss_pred hCCCCeEEEecCccccc-cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccccc
Confidence 45765 67766666655 333222234577777422 345556788888887752 11
Q ss_pred -CCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 317 -SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 317 -~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
.-.+|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. . . .. ...+. .
T Consensus 143 ~~g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~----~-~-~~--~~~~~---------~ 193 (333)
T PRK13243 143 FLGYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR----K-P-EA--EKELG---------A 193 (333)
T ss_pred ccccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC----C-h-hh--HHHcC---------C
Confidence 01356669999999999999999988754 43 588888741 1 1 00 01110 0
Q ss_pred cCCCHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCC
Q 007939 396 EGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGS 471 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~----~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGS 471 (584)
...+|.|+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.=..--|-.-.+|++ +|+.-.|.=-
T Consensus 194 ~~~~l~ell~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk----~ga~lIN~aRg~~vd~~aL~~aL~--~g~i~gAaLD 265 (333)
T PRK13243 194 EYRPLEELLRE--SDFVSLHVPLTKETYHMINEERLKLMK----PTAILVNTARGKVVDTKALVKALK--EGWIAGAGLD 265 (333)
T ss_pred EecCHHHHHhh--CCEEEEeCCCChHHhhccCHHHHhcCC----CCeEEEECcCchhcCHHHHHHHHH--cCCeEEEEec
Confidence 12469999987 898774321 13789999999994 567777666543322222223333 6665544321
Q ss_pred CCCccccCCCeeeeccCccccccchhhHH
Q 007939 472 PFENVDLGNGKIGHVNQANNMYLFPGIGL 500 (584)
Q Consensus 472 Pf~pv~~~~G~~~~p~Q~NN~~iFPGigl 500 (584)
=|++-..+ +. .-=+..|+.+-|=+|-
T Consensus 266 V~~~EP~~-~~--pL~~~~nvilTPHia~ 291 (333)
T PRK13243 266 VFEEEPYY-NE--ELFSLKNVVLAPHIGS 291 (333)
T ss_pred cCCCCCCC-Cc--hhhcCCCEEECCcCCc
Confidence 12111111 11 1113458888887764
No 135
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.16 E-value=1.2 Score=44.01 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=31.8
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
++|.+ .||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~---~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLN---SHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcC---CCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 45666 9999999999999999888775 44 689999997
No 136
>PRK06436 glycerate dehydrogenase; Provisional
Probab=82.01 E-value=9.6 Score=40.35 Aligned_cols=109 Identities=14% Similarity=0.203 Sum_probs=69.5
Q ss_pred CCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCC
Q 007939 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
+|.++++.|+|-|..|..+|+++... |+ +++.+|+... .++. .. ...+
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~af-----G~-------~V~~~~r~~~----~~~~--------~~--------~~~~ 166 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAF-----GM-------NIYAYTRSYV----NDGI--------SS--------IYME 166 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCCc----ccCc--------cc--------ccCC
Confidence 45559999999999999999866543 43 5888887511 0000 00 1246
Q ss_pred HHHHhcccCCcEEEeec----CCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEE
Q 007939 400 LLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA 468 (584)
Q Consensus 400 L~evV~~vkptvLIG~S----~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~A 468 (584)
|.|+++. .|+++=+- ..-+.|+++.+..|. +..++.=.|.-..--|-.-.+|++ +|+...|
T Consensus 167 l~ell~~--aDiv~~~lp~t~~T~~li~~~~l~~mk----~ga~lIN~sRG~~vd~~aL~~aL~--~g~i~~a 231 (303)
T PRK06436 167 PEDIMKK--SDFVLISLPLTDETRGMINSKMLSLFR----KGLAIINVARADVVDKNDMLNFLR--NHNDKYY 231 (303)
T ss_pred HHHHHhh--CCEEEECCCCCchhhcCcCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHH--cCCceEE
Confidence 8898877 88877321 123789999999994 567888787655432333334444 5554433
No 137
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.73 E-value=0.66 Score=52.33 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=27.6
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~ 360 (584)
-+|+|+|||-||+..|++|.++.. .+..-|||.|
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 689999999999999999999755 2455566655
No 138
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=81.71 E-value=11 Score=41.02 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=88.2
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hccC---------ccc-cCcchhHHHHHHHHHHHHHHhC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFC---------MFN-DDIQGTAGVALAGLLGTVRAQG 315 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~---------~FN-DDiQGTaaV~LAgll~Alr~~g 315 (584)
+|+.+.+.+.- |+ .++|+==.+.-+..++++... +.+= .|. ++..+-.-+|-.|++.=++..|
T Consensus 130 ~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~ 209 (345)
T PLN02897 130 GQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSG 209 (345)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhC
Confidence 56777777764 54 377754333444444544432 1121 111 2223445778888999999999
Q ss_pred CCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCc
Q 007939 316 LSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~ 394 (584)
.+++. +++|++|-+ ..|.-+|.||.. .|. .+.++.|+
T Consensus 210 i~l~G---K~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~--------------------------- 247 (345)
T PLN02897 210 VEIAG---KNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF--------------------------- 247 (345)
T ss_pred CCCCC---CEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC---------------------------
Confidence 99988 999999975 567778877754 232 35556553
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 395 ~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
.++|.+.+++ +|++|-+.+.++.|+.++|+.
T Consensus 248 --T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk~ 278 (345)
T PLN02897 248 --TKDPEQITRK--ADIVIAAAGIPNLVRGSWLKP 278 (345)
T ss_pred --CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1347888888 999999999999999999984
No 139
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.66 E-value=13 Score=39.60 Aligned_cols=135 Identities=17% Similarity=0.211 Sum_probs=88.8
Q ss_pred HHHHHHHHHHC--CC---eeeEeccCCCChHHHHHHHHh--hccCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 007939 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (584)
Q Consensus 253 defv~av~~~~--P~---~lIqfEDf~~~nAf~lL~ryr--~~~~~FNDDi--------QGTaaV~LAgll~Alr~~g~~ 317 (584)
+||.+.+.++- |+ .++|+==.+.-+..++++... +.+=.||..- .+-.-+|-.|++.=++..+.+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~ 154 (297)
T PRK14167 75 EELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAGDARFKPCTPHGIQKLLAAAGVD 154 (297)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 56777777774 64 377765333445555554432 2232233222 223457888899999999999
Q ss_pred CCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
++. ++++++|.+ .-|.-+|.||..... ..+ ..+.++.|+
T Consensus 155 l~G---k~vvViGrS~iVGkPla~lL~~~~~-~~~-------aTVtvchs~----------------------------- 194 (297)
T PRK14167 155 TEG---ADVVVVGRSDIVGKPMANLLIQKAD-GGN-------ATVTVCHSR----------------------------- 194 (297)
T ss_pred CCC---CEEEEECCCcccHHHHHHHHhcCcc-CCC-------CEEEEeCCC-----------------------------
Confidence 888 999999975 568888888754211 001 135555442
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-+.+.|+.++.++|+.
T Consensus 195 T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 225 (297)
T PRK14167 195 TDDLAAKTRR--ADIVVAAAGVPELIDGSMLSE 225 (297)
T ss_pred CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888888 999999999999999999884
No 140
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=81.64 E-value=1.3 Score=44.49 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=59.0
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
.+|++ .||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+= +.. .+|+.+- -|..+ ++ |..
T Consensus 17 ~~L~~---~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~--sNL~Rq~-l~~~~--di-G~~ 75 (228)
T cd00757 17 EKLKN---ARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV-VEL--SNLQRQI-LHTEA--DV-GQP 75 (228)
T ss_pred HHHhC---CcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE-EcC--ccccccc-ccChh--hC-CCh
Confidence 35566 9999999999999999999776 44 6899999972 222 2344321 11111 10 111
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE-ecCCCCC
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF-AMSNPTM 448 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF-aLSNPt~ 448 (584)
....+.+.++...|++=|=.. ...++++-+...-+ +--+|| ++-||..
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~--~~~i~~~~~~~~~~---~~DvVi~~~d~~~~ 124 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAY--NERLDAENAEELIA---GYDLVLDCTDNFAT 124 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEe--cceeCHHHHHHHHh---CCCEEEEcCCCHHH
Confidence 123466677777776543222 23345444443311 222333 5556644
No 141
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=81.40 E-value=3.2 Score=42.76 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=57.7
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhh--hccccccCCcC-CcccCCCHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA--APFAKDPGDFM-GLREGASLL 401 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k--~~fA~~~~~~~-~~~~~~~L~ 401 (584)
||.|+|+|..|..+|..|... | .+++++|+..-..+ .+.... ..+... ..+. +.....++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAA---EINADRENPRYLPG-IKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHH---HHHHcCcccccCCC-CcCCCCeEEeCCHH
Confidence 799999999999999988653 3 25778887531110 000000 000000 0000 001124677
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 402 evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
|+++. +|++| ++.. ....+++++.+.....+.-+|..++|-..
T Consensus 67 ~~~~~--~D~vi-~~v~-~~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAVP-SQALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeCC-HHHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 77776 77766 3332 24668888777543345668888887443
No 142
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=81.35 E-value=4.2 Score=44.39 Aligned_cols=86 Identities=10% Similarity=0.199 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCC
Q 007939 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (584)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~ 376 (584)
+-.-+|-.|++.=|+..+.+++. +++|++|-+ ..|.-+|.||.. .|. .+.++.|+
T Consensus 209 ~f~PCTp~avielL~~y~i~l~G---K~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~--------- 264 (364)
T PLN02616 209 LFVPCTPKGCIELLHRYNVEIKG---KRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR--------- 264 (364)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC---------
Confidence 34566778889999999999888 999999975 567788877755 232 36666543
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
.++|.+.+++ +|++|-..+.++.++.++|+.
T Consensus 265 --------------------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK~ 295 (364)
T PLN02616 265 --------------------TKNPEEITRE--ADIIISAVGQPNMVRGSWIKP 295 (364)
T ss_pred --------------------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcCC
Confidence 1458888888 999999999999999999884
No 143
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=81.05 E-value=1.3 Score=45.06 Aligned_cols=107 Identities=19% Similarity=0.323 Sum_probs=58.7
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
.+|++ .||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ .. .+|..+ .-|... ++ |.+
T Consensus 20 ~~L~~---~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~--sNL~RQ-~l~~~~--di-G~~ 78 (240)
T TIGR02355 20 EALKA---SRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV-SL--SNLQRQ-VLHSDA--NI-GQP 78 (240)
T ss_pred HHHhC---CcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc-cc--cCcccc-eeeeHh--hC-CCc
Confidence 45666 9999999999999999999775 44 68999999722 21 234422 111111 10 101
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE-ecCCCCC
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF-AMSNPTM 448 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF-aLSNPt~ 448 (584)
....+.+.++...|++-|-.- ...++++-+...-+ +--+|+ +.-||..
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~--~~~i~~~~~~~~~~---~~DlVvd~~D~~~~ 127 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPI--NAKLDDAELAALIA---EHDIVVDCTDNVEV 127 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEE--eccCCHHHHHHHhh---cCCEEEEcCCCHHH
Confidence 112355666666677655433 23455543333211 223444 5555554
No 144
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=80.90 E-value=1.2 Score=47.65 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=33.2
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
.+|++ .||+|+|+|..|.-+|+.|+.+.+ .+|.++|.+=
T Consensus 20 ~~L~~---~~VlIiG~GglGs~va~~La~aGv-----------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIRE---KHVLIVGAGALGAANAEALVRAGI-----------GKLTIADRDY 58 (338)
T ss_pred HhhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCCc
Confidence 45666 999999999999999999987644 6899999983
No 145
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=80.86 E-value=13 Score=39.65 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHHh---------C-----C--CCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcE
Q 007939 298 GTAGVALAGLLGTVRAQ---------G-----L--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (584)
Q Consensus 298 GTaaV~LAgll~Alr~~---------g-----~--~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i 361 (584)
.+|=-+++-+|+.+|.. | . .-.+|.+.+|.|+|.|..|..+|+.+... |. ++
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-----G~-------~V 172 (330)
T PRK12480 105 TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-----GA-------TI 172 (330)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EE
Confidence 45556777777777742 1 0 01245559999999999999999988653 43 58
Q ss_pred EEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEee-cCC---CCCCCHHHHHHhhhcCCCC
Q 007939 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL-SGV---GGVFNEEVLKAMRESDSVK 437 (584)
Q Consensus 362 ~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~-S~~---~g~Fteevv~~M~~~~~er 437 (584)
+.+|+.- + . ...+.+ ...+|.|+++. .|+++=. ... -+.|+++++..|. +.
T Consensus 173 ~~~d~~~----~--~----~~~~~~---------~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~~mk----~g 227 (330)
T PRK12480 173 TAYDAYP----N--K----DLDFLT---------YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFDHVK----KG 227 (330)
T ss_pred EEEeCCh----h--H----hhhhhh---------ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHhcCC----CC
Confidence 8888641 0 0 001111 12468888887 7876632 211 1567888888883 45
Q ss_pred CeEEecCCC
Q 007939 438 PAIFAMSNP 446 (584)
Q Consensus 438 PIIFaLSNP 446 (584)
.++.-.|.-
T Consensus 228 avlIN~aRG 236 (330)
T PRK12480 228 AILVNAARG 236 (330)
T ss_pred cEEEEcCCc
Confidence 676655543
No 146
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=80.80 E-value=1.2 Score=48.34 Aligned_cols=124 Identities=19% Similarity=0.319 Sum_probs=71.3
Q ss_pred HHHHhhccCc--cccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcC
Q 007939 282 LERYRKRFCM--FNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARN 359 (584)
Q Consensus 282 L~ryr~~~~~--FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~ 359 (584)
++||..++.+ |.-+-| ++|++ .||+++|+|..|.-+|..|+.+ |+ +
T Consensus 19 ~~ry~Rqi~l~~~g~~~q------------------~~l~~---~~VliiG~GglG~~v~~~La~~-----Gv------g 66 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQ------------------ERLHN---ARVLVIGAGGLGCPAMQSLASA-----GV------G 66 (370)
T ss_pred HHHhhcccchhhhCHHHH------------------HHhcC---CcEEEECCCHHHHHHHHHHHHc-----CC------C
Confidence 5789887655 443322 56777 9999999999999999998876 44 6
Q ss_pred cEEEEecCcccccC--CC------CCChhhhcccc----ccCC---cCCcc---cCCCHHHHhcccCCcEEEeecCCCCC
Q 007939 360 KFFLLDKDGLITKE--RK------NLDPAAAPFAK----DPGD---FMGLR---EGASLLEVVRKVKPHVLLGLSGVGGV 421 (584)
Q Consensus 360 ~i~lvDs~GLi~~~--r~------~l~~~k~~fA~----~~~~---~~~~~---~~~~L~evV~~vkptvLIG~S~~~g~ 421 (584)
+|.++|.+=+=..+ |. ++-..|..-++ ..++ +.... ...++.+.+++ .|++|.++.. .
T Consensus 67 ~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn--~ 142 (370)
T PRK05600 67 TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDS--F 142 (370)
T ss_pred EEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCC--H
Confidence 89999997321111 11 11122221111 1111 10000 11345566766 7888876643 2
Q ss_pred CCHHHHHHhhhcCCCCCeEEe
Q 007939 422 FNEEVLKAMRESDSVKPAIFA 442 (584)
Q Consensus 422 Fteevv~~M~~~~~erPIIFa 442 (584)
=++-+|..++. ....|.|++
T Consensus 143 ~~r~~in~~~~-~~~iP~v~~ 162 (370)
T PRK05600 143 ATKFLVADAAE-ITGTPLVWG 162 (370)
T ss_pred HHHHHHHHHHH-HcCCCEEEE
Confidence 23455666654 445788876
No 147
>PLN03139 formate dehydrogenase; Provisional
Probab=80.76 E-value=34 Score=37.67 Aligned_cols=202 Identities=16% Similarity=0.105 Sum_probs=116.0
Q ss_pred HHCCCe-eeEeccCCCChHHHHHHHHhhccCccccCc---chhHHHHHHHHHHHHHHh---------C--------CCCC
Q 007939 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G--------LSLT 319 (584)
Q Consensus 261 ~~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------g--------~~l~ 319 (584)
...|+. +|+.--.+..| +.+-.--+..+.+.|--- +..|=-+++-+|+.+|.. | ..-.
T Consensus 117 ~~ap~LK~I~~~g~G~D~-iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 195 (386)
T PLN03139 117 KKAKNLELLLTAGIGSDH-IDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAY 195 (386)
T ss_pred hhCCCccEEEECCccccc-cCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCc
Confidence 446776 77776666665 333332334588877532 334555688888887732 1 0113
Q ss_pred CCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCC
Q 007939 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
+|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... ... .+.... .....+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~--------~~~--~~~~~g-----~~~~~~ 248 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM--------DPE--LEKETG-----AKFEED 248 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc--------chh--hHhhcC-----ceecCC
Confidence 45669999999999999999999764 33 5777887532 100 000000 001247
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCc
Q 007939 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~----~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~p 475 (584)
|.|+++. .|+++=..- .-+.|+++.+..|. +.-+++=.|.=.---|---.+|++ .|+.-.|..-=|.+
T Consensus 249 l~ell~~--sDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~iVDe~AL~~AL~--sG~l~GAaLDV~~~ 320 (386)
T PLN03139 249 LDAMLPK--CDVVVINTPLTEKTRGMFNKERIAKMK----KGVLIVNNARGAIMDTQAVADACS--SGHIGGYGGDVWYP 320 (386)
T ss_pred HHHHHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC----CCeEEEECCCCchhhHHHHHHHHH--cCCceEEEEcCCCC
Confidence 9999977 888773221 12789999999994 456777655433211222223333 67766666544432
Q ss_pred cccCCCeeeeccCccccccchhhHH
Q 007939 476 VDLGNGKIGHVNQANNMYLFPGIGL 500 (584)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGigl 500 (584)
--.+... .--+..|+.+-|=++-
T Consensus 321 EPlp~d~--pL~~~pNvilTPHiag 343 (386)
T PLN03139 321 QPAPKDH--PWRYMPNHAMTPHISG 343 (386)
T ss_pred CCCCCCC--hhhcCCCeEEcccccc
Confidence 2221011 1123458888887763
No 148
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.75 E-value=8 Score=40.10 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=25.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
++|.|+|+|..|.+||..+... |. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 5899999999999999988653 43 5888886
No 149
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=80.21 E-value=0.71 Score=51.76 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=19.9
Q ss_pred ceEEEeCcchhhHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (584)
.||||+|||.||++.|..|++
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred ceEEEECCchHHHHHHHHHHH
Confidence 899999999999999999985
No 150
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=80.02 E-value=12 Score=39.98 Aligned_cols=98 Identities=28% Similarity=0.285 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHH------------------HhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcE
Q 007939 300 AGVALAGLLGTVR------------------AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (584)
Q Consensus 300 aaV~LAgll~Alr------------------~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i 361 (584)
|=-+++.+|+..| ..|..|.+ +++-|+|.|..|..+|+.+....+ ++
T Consensus 104 AE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~g---kTvGIiG~G~IG~~va~~l~afgm------------~v 168 (324)
T COG0111 104 AELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAG---KTVGIIGLGRIGRAVAKRLKAFGM------------KV 168 (324)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccC---CEEEEECCCHHHHHHHHHHHhCCC------------eE
Confidence 4446777777777 34445555 999999999999999999988644 68
Q ss_pred EEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHh
Q 007939 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAM 430 (584)
Q Consensus 362 ~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S----~~~g~Fteevv~~M 430 (584)
..+|+. ..++ ...+ .+.....+|.|+++. .|+|.-.- ...|.++++-+..|
T Consensus 169 ~~~d~~----~~~~-----~~~~-------~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 169 IGYDPY----SPRE-----RAGV-------DGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred EEECCC----Cchh-----hhcc-------ccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 888883 1110 0000 000123569999988 89888542 12388999999999
No 151
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.97 E-value=5.4 Score=42.44 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
-.-+|-.|++.=++..|.+++. ++++++|.+ ..|.-+|.||.. .|. .+.++.|+
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~G---k~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~---------- 191 (297)
T PRK14186 137 LRSCTPAGVMRLLRSQQIDIAG---KKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR---------- 191 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC----------
Confidence 3457788889999999999988 999999975 578888888754 232 35555442
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-+.+.++.|+.++|+.
T Consensus 192 -------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 222 (297)
T PRK14186 192 -------------------TQDLASITRE--ADILVAAAGRPNLIGAEMVKP 222 (297)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888888 999999999999999999884
No 152
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.72 E-value=5.4 Score=42.36 Aligned_cols=89 Identities=12% Similarity=0.192 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-hhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCC
Q 007939 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (584)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l 377 (584)
-.-+|-.|++.=++..+.+++. +++|++|.+ ..|.-+|.||.. .|.+. . ..+.++.|+
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~G---K~vvViGrS~iVGkPla~lL~~-----~~~~~-~--aTVtvchs~---------- 194 (293)
T PRK14185 136 FVSATPNGILELLKRYHIETSG---KKCVVLGRSNIVGKPMAQLMMQ-----KAYPG-D--CTVTVCHSR---------- 194 (293)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHc-----CCCCC-C--CEEEEecCC----------
Confidence 3456788888889999999988 999999975 568788877754 22110 0 124445442
Q ss_pred ChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
..+|.+.+++ +|++|-+.+.|+.++.|+|+.
T Consensus 195 -------------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 225 (293)
T PRK14185 195 -------------------SKNLKKECLE--ADIIIAALGQPEFVKADMVKE 225 (293)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1458888887 999999999999999998884
No 153
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=79.41 E-value=1.5 Score=49.82 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=34.4
Q ss_pred CCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccccc
Q 007939 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (584)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~ 372 (584)
+.+.|.+++|||+-|++||+-|+...+ ++|.+||.--+-+.
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~WGv-----------RhITFvDn~kVsyS 378 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDNGKVSYS 378 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhhcc-----------ceEEEEecCeeecc
Confidence 346899999999999999999999977 68999998544333
No 154
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=79.31 E-value=1.9 Score=40.62 Aligned_cols=31 Identities=29% Similarity=0.643 Sum_probs=25.2
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+|||+|+|.||+..|..+... | .+++++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-----~-------~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-----G-------AKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-----C-------CeEEEEecc
Confidence 699999999999999998832 3 368888664
No 155
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=79.20 E-value=54 Score=36.65 Aligned_cols=193 Identities=20% Similarity=0.207 Sum_probs=124.3
Q ss_pred cCCChhhhhHhHHHHHHHHHHHC-CCeeeEeccCCCCh--HHHHHHHHhhcc-----Ccc------c----cCcchhHHH
Q 007939 241 PRLEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKRF-----CMF------N----DDIQGTAGV 302 (584)
Q Consensus 241 ~R~~g~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~~n--Af~lL~ryr~~~-----~~F------N----DDiQGTaaV 302 (584)
+..+..|-..|...|++++.+.- |+.-|-=+|++..- =--+.+.|+.-. ++| . +----||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 44778888999999999999988 89999999998632 122455555321 111 1 122224333
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhh
Q 007939 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 382 (584)
Q Consensus 303 ~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~ 382 (584)
+.-++-.+++..|.+|+. .||.|-|-|..|.=.|+.+.+. |- |=+-+=|++|-|++. +.|+..+.
T Consensus 190 v~~~~~~a~~~~g~~l~G---~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~-~Gld~~~l 254 (411)
T COG0334 190 VFYAIREALKALGDDLEG---ARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDE-DGLDVEAL 254 (411)
T ss_pred hHHHHHHHHHHcCCCcCC---CEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecC-CCCCHHHH
Confidence 333344777888888888 9999999999998888887653 43 457778999988876 45654433
Q ss_pred cccccc-CC---cCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCHHHH
Q 007939 383 PFAKDP-GD---FMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADA 457 (584)
Q Consensus 383 ~fA~~~-~~---~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN-Pt~~aE~tpeda 457 (584)
...++. .. ..+.....+ |.+-.+..||||=+.. .+..|++-.+...+ + +|.=-+| ||. -.+++.
T Consensus 255 ~~~~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a----k-~V~EgAN~P~t---~eA~~i 323 (411)
T COG0334 255 LELKERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA----K-IVVEGANGPTT---PEADEI 323 (411)
T ss_pred HHHhhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh----c-EEEeccCCCCC---HHHHHH
Confidence 211110 00 000000111 3344567999997775 79999999998843 2 8888888 775 445555
Q ss_pred hc
Q 007939 458 FK 459 (584)
Q Consensus 458 ~~ 459 (584)
+.
T Consensus 324 ~~ 325 (411)
T COG0334 324 LL 325 (411)
T ss_pred HH
Confidence 55
No 156
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.06 E-value=1.8 Score=41.91 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=27.9
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999998775 44 689999997
No 157
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=78.93 E-value=1.7 Score=42.88 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=48.1
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccc-cCCcCCc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGL 394 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~-~~~~~~~ 394 (584)
++|++ .||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=+ .. .+++.+ .|.+. ..+ -|.
T Consensus 15 ~~L~~---s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~v-e~--snl~rq--~~~~~~~~~-iG~ 74 (198)
T cd01485 15 NKLRS---AKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRLV-ST--EDLGSN--FFLDAEVSN-SGM 74 (198)
T ss_pred HHHhh---CcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCcC-Ch--hcCccc--Eecccchhh-cCc
Confidence 34566 9999999999999999999776 44 68999999732 22 234322 12221 011 111
Q ss_pred ccCCCHHHHhcccCCcEEEe
Q 007939 395 REGASLLEVVRKVKPHVLLG 414 (584)
Q Consensus 395 ~~~~~L~evV~~vkptvLIG 414 (584)
+....+.+.++...|++=|=
T Consensus 75 ~Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 75 NRAAASYEFLQELNPNVKLS 94 (198)
T ss_pred hHHHHHHHHHHHHCCCCEEE
Confidence 11234666677777877543
No 158
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=78.92 E-value=3.7 Score=44.30 Aligned_cols=100 Identities=20% Similarity=0.311 Sum_probs=54.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc--cccCCCCCChhhhccccccCCc-CCcccCCCH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKERKNLDPAAAPFAKDPGDF-MGLREGASL 400 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL--i~~~r~~l~~~k~~fA~~~~~~-~~~~~~~~L 400 (584)
.+|.++|||+=|+.+|..+.+- |- .=++|..|.+=. |-.+|. ...|-..- .+ .+..-..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~-----N~~yLp~i-~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE-----NPKYLPGI-LLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc-----CccccCCc-cCCcccccccCH
Confidence 6899999999999999998874 31 125777765310 111111 11122110 00 011224678
Q ss_pred HHHhcccCCcE-EEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007939 401 LEVVRKVKPHV-LLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (584)
Q Consensus 401 ~evV~~vkptv-LIG~S~~~g~Fteevv~~M~~~~~erPIIFaLS 444 (584)
.++++. .|+ |++++++ |-+++++.|.....++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 888886 444 5555543 66777777743334455554444
No 159
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=78.89 E-value=1.8 Score=39.80 Aligned_cols=121 Identities=18% Similarity=0.215 Sum_probs=62.9
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV 404 (584)
||+++|+|.-|.-+|+.|+.. |. ++|.++|.+-+ .. .+|..+ .|.... + -|.+....+.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v-~~--~nl~r~--~~~~~~-~-vG~~Ka~~~~~~l 62 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTV-EL--SNLNRQ--FLARQA-D-IGKPKAEVAARRL 62 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCc-Cc--chhhcc--ccCChh-H-CCChHHHHHHHHH
Confidence 689999999999999999776 44 68999998733 21 133322 222111 1 0111123466777
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeC
Q 007939 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASG 470 (584)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsG 470 (584)
+...|.+=|-.- ...++++..... ..+--|||--+... .+...-.++.+ ..|...+.+|
T Consensus 63 ~~~~p~v~i~~~--~~~~~~~~~~~~---~~~~diVi~~~d~~-~~~~~l~~~~~-~~~i~~i~~~ 121 (143)
T cd01483 63 NELNPGVNVTAV--PEGISEDNLDDF---LDGVDLVIDAIDNI-AVRRALNRACK-ELGIPVIDAG 121 (143)
T ss_pred HHHCCCcEEEEE--eeecChhhHHHH---hcCCCEEEECCCCH-HHHHHHHHHHH-HcCCCEEEEc
Confidence 777777655433 223444332222 23455666554432 12222223222 2355566555
No 160
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=78.85 E-value=3.7 Score=46.07 Aligned_cols=130 Identities=21% Similarity=0.202 Sum_probs=65.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhh----hcc--ccccCC-cCC-cc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA----APF--AKDPGD-FMG-LR 395 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k----~~f--A~~~~~-~~~-~~ 395 (584)
.||-|+|+|..|.+||..++.+ |. +++++|..-=-. +.+.... ..+ ...... ..+ ..
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~g~i~ 69 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHPEAE---RIIGEVLANAERAYAMLTDAPLPPEGRLT 69 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCHHHH---HHHHHHHHHHHHHHhhhccchhhhhhceE
Confidence 5899999999999999998764 54 588888731100 0111000 000 000000 000 11
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCC-CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcc--cCCcEEEEeCCC
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKH--AGENIVFASGSP 472 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~-Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~w--T~Grai~AsGSP 472 (584)
-..++.|+++. .|++| .+..... +.+++.+.+.+ ..+.-.|+..|--.. ++.+..+. ..|+++++ .|
T Consensus 70 ~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~-~~~~~~iI~SsTsgi----~~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 70 FCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDA-AARPDALIGSSTSGF----LPSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred eeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHh-hCCCCcEEEEcCCCC----CHHHHHhhcCCcceEEEE--ec
Confidence 23578888877 78777 4433332 34555555532 333335554443222 22222222 24555555 48
Q ss_pred CCcccc
Q 007939 473 FENVDL 478 (584)
Q Consensus 473 f~pv~~ 478 (584)
|.|+.+
T Consensus 140 ~nP~~~ 145 (495)
T PRK07531 140 YNPVYL 145 (495)
T ss_pred CCCccc
Confidence 888754
No 161
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=78.63 E-value=3.7 Score=45.93 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=65.2
Q ss_pred HHHHHHHHHCCCeeeEeccCCCChHHHHHHHHhhc-cC--ccccCcchhHHHHHHHHHHHHHHh--------CCCCCCCC
Q 007939 254 EFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQ--------GLSLTDFA 322 (584)
Q Consensus 254 efv~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~-~~--~FNDDiQGTaaV~LAgll~Alr~~--------g~~l~dl~ 322 (584)
+..+-+....|+.-..+ +....-.++.++|.-. +| .+|++..+.|....+-+++.++.. ...-.+
T Consensus 137 ~~~~~~a~~~p~i~~~~--id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~-- 212 (515)
T TIGR03140 137 QALNQMALLNPNISHTM--IDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDP-- 212 (515)
T ss_pred HHHHHHHHhCCCceEEE--EEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCC--
Confidence 33344455567654433 5556677888999765 44 358888888888888888887654 112334
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
.+++|+|||+||+..|..+.. .|+ ++.++|+
T Consensus 213 -~dVvIIGgGpAGl~AA~~la~-----~G~-------~v~li~~ 243 (515)
T TIGR03140 213 -YDVLVVGGGPAGAAAAIYAAR-----KGL-------RTAMVAE 243 (515)
T ss_pred -CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEec
Confidence 789999999999999887655 354 4666764
No 162
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=78.61 E-value=27 Score=39.71 Aligned_cols=221 Identities=18% Similarity=0.166 Sum_probs=125.8
Q ss_pred HCCCe-eeEeccCCCChHHHHHHHHhhccCccccCc---chhHHHHHHHHHHHHHHh---------C---C-C--CCCCC
Q 007939 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L-S--LTDFA 322 (584)
Q Consensus 262 ~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------g---~-~--l~dl~ 322 (584)
..|+. +|+.--.+..| ..+-.--+.-+++.|-.- +.+|=-+++-+|+..|.. | + . -.+|.
T Consensus 61 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~ 139 (526)
T PRK13581 61 AAKNLKVIGRAGVGVDN-VDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELY 139 (526)
T ss_pred hCCCCeEEEECCccccc-ccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccC
Confidence 45776 77766666555 222222234577777532 345667788888888752 1 0 0 12355
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
++++.|+|.|..|..+|+.+..+ |+ +++.+|+.. .+ .+ . ... + ....+|.|
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~----~~-----~~--~-~~~----g-~~~~~l~e 190 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-----GM-------KVIAYDPYI----SP-----ER--A-AQL----G-VELVSLDE 190 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCC----Ch-----hH--H-Hhc----C-CEEEcHHH
Confidence 59999999999999999998764 43 588888741 11 00 0 000 0 01236899
Q ss_pred HhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCcccc
Q 007939 403 VVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDL 478 (584)
Q Consensus 403 vV~~vkptvLIG~S~----~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~~ 478 (584)
+++. .|+++=.-. .-+.|+++.+..|. +..++.-.|.-..--|.--.+|++ .|+.--|.=-=|.+-..
T Consensus 191 ll~~--aDiV~l~lP~t~~t~~li~~~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 191 LLAR--ADFITLHTPLTPETRGLIGAEELAKMK----PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPP 262 (526)
T ss_pred HHhh--CCEEEEccCCChHhhcCcCHHHHhcCC----CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCC
Confidence 9887 788763321 23789999999994 467888777655433433444444 66665442111111101
Q ss_pred CCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCC
Q 007939 479 GNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTD 528 (584)
Q Consensus 479 ~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~alA~~v~~ 528 (584)
. .. .-=+..|+.+-|=+|-....+ ...|...+++.+.....-
T Consensus 263 ~-~~--pL~~~~nvilTPHia~~t~e~-----~~~~~~~~~~ni~~~~~g 304 (526)
T PRK13581 263 T-DS--PLFELPNVVVTPHLGASTAEA-----QENVAIQVAEQVIDALRG 304 (526)
T ss_pred C-Cc--hhhcCCCeeEcCccccchHHH-----HHHHHHHHHHHHHHHHcC
Confidence 1 01 111245899999887433322 244555566666665543
No 163
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.36 E-value=10 Score=39.01 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.6
Q ss_pred CceEEEeCcchhhHHHHHHHHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~ 344 (584)
..||.|+|+|.-|..||+.+..
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~ 24 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLH 24 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHH
Confidence 4799999999999999998865
No 164
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.19 E-value=5.6 Score=39.50 Aligned_cols=124 Identities=11% Similarity=0.132 Sum_probs=68.2
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
..||.|+|+|..|..++..+... |.. -.++++.+++. +.+.+...+..|-- ....++.|
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~~~~~~~~~~~~~~--------~~~~~~~~ 62 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----NVEKLDQLQARYNV--------STTTDWKQ 62 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----CHHHHHHHHHHcCc--------EEeCChHH
Confidence 37999999999999998887642 210 01246666542 00112222222210 11246788
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC-CcEEEEeCCCCCcccc
Q 007939 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG-ENIVFASGSPFENVDL 478 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~-Grai~AsGSPf~pv~~ 478 (584)
++++ .|++| +++.+. .-+++++.++. +-...+|+.++.-.+. +..-+|.+ ++.++-++ |-.+.++
T Consensus 63 ~~~~--~DiVi-iavp~~-~~~~v~~~l~~-~~~~~~vis~~~gi~~-----~~l~~~~~~~~~v~r~~-Pn~a~~v 128 (245)
T PRK07634 63 HVTS--VDTIV-LAMPPS-AHEELLAELSP-LLSNQLVVTVAAGIGP-----SYLEERLPKGTPVAWIM-PNTAAEI 128 (245)
T ss_pred HHhc--CCEEE-EecCHH-HHHHHHHHHHh-hccCCEEEEECCCCCH-----HHHHHHcCCCCeEEEEC-CcHHHHH
Confidence 8875 78766 444444 44888988854 2234577777766543 34444443 34555565 5444444
No 165
>PRK07574 formate dehydrogenase; Provisional
Probab=78.16 E-value=37 Score=37.40 Aligned_cols=201 Identities=15% Similarity=0.132 Sum_probs=113.7
Q ss_pred HHCCCe-eeEeccCCCChHHHHHHHHhhccCccccCc---chhHHHHHHHHHHHHHHh---------C--------CCCC
Q 007939 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G--------LSLT 319 (584)
Q Consensus 261 ~~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------g--------~~l~ 319 (584)
...|+. +|+.-=.+..| ..+-.--+..+.+.|-.- +..|=-+++-+|+.+|.. | ....
T Consensus 110 ~~~p~LK~I~~~g~G~D~-id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 188 (385)
T PRK07574 110 AKAPNLKLAITAGIGSDH-VDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSY 188 (385)
T ss_pred hhCCCCcEEEECCccccc-ccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccce
Confidence 346776 66665555554 222222233477777533 234445788888887732 1 0123
Q ss_pred CCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCC
Q 007939 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
+|.+++|.|+|.|..|..+|+.+... |+ +++.+|+...- . .. .+.+ . .....+
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~---~-~~---~~~~--g------~~~~~~ 241 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLP---E-EV---EQEL--G------LTYHVS 241 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCc---h-hh---Hhhc--C------ceecCC
Confidence 45569999999999999999998765 33 58888875320 0 00 0011 0 011357
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCc
Q 007939 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~----~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~p 475 (584)
|.|+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.=..--|..-.+|++ .|+.-.|..-=|.+
T Consensus 242 l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~iVDe~AL~~AL~--sG~i~GAaLDV~~~ 313 (385)
T PRK07574 242 FDSLVSV--CDVVTIHCPLHPETEHLFDADVLSRMK----RGSYLVNTARGKIVDRDAVVRALE--SGHLAGYAGDVWFP 313 (385)
T ss_pred HHHHhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC----CCcEEEECCCCchhhHHHHHHHHH--hCCccEEEEecCCC
Confidence 9999988 898873321 13789999999994 467887776544322333334444 67666554433322
Q ss_pred cccCCCeeeeccCccccccchhhH
Q 007939 476 VDLGNGKIGHVNQANNMYLFPGIG 499 (584)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGig 499 (584)
-..+.... --+..|+.+-|=++
T Consensus 314 EPlp~d~p--L~~~pNvilTPHia 335 (385)
T PRK07574 314 QPAPADHP--WRTMPRNGMTPHIS 335 (385)
T ss_pred CCCCCCCh--HHhCCCeEECCccc
Confidence 11110110 01334788888665
No 166
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=77.94 E-value=2.1 Score=43.71 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=32.6
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|++ .||+++|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~---~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKA---ARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcC---CeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 46677 9999999999999999999876 44 689999997
No 167
>PLN02602 lactate dehydrogenase
Probab=77.82 E-value=6.8 Score=42.37 Aligned_cols=128 Identities=20% Similarity=0.305 Sum_probs=77.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
.||.|+|||..|..+|-.|+. .|+. ..|.|+|..-=..++. -+|.+.. +|-... .. ....+.++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l~-----~el~LiDi~~~~~~g~a~DL~~~~-~~~~~~-~i---~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDLA-----DELALVDVNPDKLRGEMLDLQHAA-AFLPRT-KI---LASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC-----CEEEEEeCCCchhhHHHHHHHhhh-hcCCCC-EE---EeCCCHHH
Confidence 399999999999999887764 3553 5799999731111111 1333332 222211 11 11134544
Q ss_pred HhcccCCcEEEeecCC---CCCCCH------------HHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcE
Q 007939 403 VVRKVKPHVLLGLSGV---GGVFNE------------EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (584)
Q Consensus 403 vV~~vkptvLIG~S~~---~g~Fte------------evv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~--Gra 465 (584)
+++ .|++|=+.+. +| -|+ ++++.|.+ ++..-+|+-.|||.. ....-+++++. =+-
T Consensus 103 -~~d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~-~~p~~ivivvtNPvd---v~t~~~~k~sg~p~~r 174 (350)
T PLN02602 103 -TAG--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAK-YSPDTILLIVSNPVD---VLTYVAWKLSGFPANR 174 (350)
T ss_pred -hCC--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCchH---HHHHHHHHHhCCCHHH
Confidence 766 8888855443 33 233 66777754 889999999999984 66666777662 144
Q ss_pred EEEeCCCCC
Q 007939 466 VFASGSPFE 474 (584)
Q Consensus 466 i~AsGSPf~ 474 (584)
+|++|.-.+
T Consensus 175 viG~gt~LD 183 (350)
T PLN02602 175 VIGSGTNLD 183 (350)
T ss_pred EEeecchHH
Confidence 677774443
No 168
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=77.77 E-value=13 Score=42.14 Aligned_cols=36 Identities=11% Similarity=-0.072 Sum_probs=30.2
Q ss_pred eccCccccccchhhHHHHHHhCCcccCHHHHHHHHH
Q 007939 485 HVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (584)
Q Consensus 485 ~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~ 520 (584)
.||..+|-..+|.+.-+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 478899999999999998888877788888887765
No 169
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=77.63 E-value=1.8 Score=50.43 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=31.7
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
+.||+++|||.-|.-+|+.|+.+.+ ++|.+||.+-+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GV-----------g~ItlVD~D~V 373 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGV-----------RHITFVDNGKV 373 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC-----------CeEEEEcCCEE
Confidence 4999999999999999999988755 68999998744
No 170
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=77.22 E-value=5.4 Score=42.24 Aligned_cols=132 Identities=16% Similarity=0.235 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHC--CCe---eeEeccCCCChHHHHHHHHh--hccCcccc--------CcchhHHHHHHHHHHHHHHhCC
Q 007939 252 VDEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYR--KRFCMFND--------DIQGTAGVALAGLLGTVRAQGL 316 (584)
Q Consensus 252 vdefv~av~~~~--P~~---lIqfEDf~~~nAf~lL~ryr--~~~~~FND--------DiQGTaaV~LAgll~Alr~~g~ 316 (584)
-+|+.+.+.++- |++ ++|+==...-++..+|+.-- +.+==||- ...+--.+|-+|++.-++..+.
T Consensus 73 ~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i 152 (283)
T COG0190 73 EEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGI 152 (283)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCC
Confidence 366667777764 554 77876555556666665532 11101111 1334557788999999999999
Q ss_pred CCCCCCCceEEEeCcch-hhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 317 SLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 317 ~l~dl~~~riv~~GAGs-Ag~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
+|+. .++|++|.+. -|--+|.+|... + ..+.+++|+
T Consensus 153 ~l~G---k~~vVVGrS~iVGkPla~lL~~~-----n-------aTVtvcHs~---------------------------- 189 (283)
T COG0190 153 DLRG---KNVVVVGRSNIVGKPLALLLLNA-----N-------ATVTVCHSR---------------------------- 189 (283)
T ss_pred CCCC---CEEEEECCCCcCcHHHHHHHHhC-----C-------CEEEEEcCC----------------------------
Confidence 9999 9999999874 577788777663 2 235666653
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
.++|.+.+++ +|++|-+-+.++.|+.++|+.
T Consensus 190 -T~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk~ 220 (283)
T COG0190 190 -TKDLASITKN--ADIVVVAVGKPHFIKADMVKP 220 (283)
T ss_pred -CCCHHHHhhh--CCEEEEecCCccccccccccC
Confidence 2458888888 999999999999999888874
No 171
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=77.13 E-value=1.4 Score=47.97 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=32.4
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
++|++ .||+++|+|.-|.-+|..|+.+.+ ++|.++|.+
T Consensus 38 ~~L~~---~~VlviG~GGlGs~va~~La~~Gv-----------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKN---ARVLVIGAGGLGSPTLLYLAAAGV-----------GTLGIVEFD 75 (392)
T ss_pred HHHhc---CCEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 55667 999999999999999999987644 689999986
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=77.04 E-value=2.8 Score=46.93 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=64.7
Q ss_pred HHHHHHCCCeeeEeccCCCChHHHHHHHHhhc-cC--ccccCcchhHHHHHHHHHHHHHHhCC--------CCCCCCCce
Q 007939 257 EAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQGL--------SLTDFADQK 325 (584)
Q Consensus 257 ~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~-~~--~FNDDiQGTaaV~LAgll~Alr~~g~--------~l~dl~~~r 325 (584)
+.+....|+ |.+|=+....-.++.++|.-. +| ++|++....|....+-++..++.... ...+ -.
T Consensus 139 ~~~a~~~~~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d 213 (517)
T PRK15317 139 NLMAVLNPN--ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDP---YD 213 (517)
T ss_pred HHHHHhCCC--ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCC---CC
Confidence 333344564 444555556677888899755 44 45777788888888899988875322 1234 68
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+||+|||.||+..|..+.. .|+ ++.++|.+
T Consensus 214 vvIIGgGpaGl~aA~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 214 VLVVGGGPAGAAAAIYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred EEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 9999999999999988754 465 46667654
No 173
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=76.90 E-value=4.1 Score=41.74 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.|++.+++..+..... .+++|+|+|.+|..++..+.+ .| .+++++|+.
T Consensus 102 ~G~~~~l~~~~~~~~~---k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 102 IGLVSDLERLIPLRPN---QRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHhcCCCccC---CEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 3466666654444555 899999999777777666543 23 268888863
No 174
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.89 E-value=15 Score=39.08 Aligned_cols=127 Identities=21% Similarity=0.209 Sum_probs=73.9
Q ss_pred eEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007939 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
||.|+|| |..|..+|-.|+. .|+. ..+.|+|.+ + .++. -+|.+.. .+.+ ..+.....++.+
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~~-----~elvLiDi~-~-a~g~alDL~~~~-~~~~----i~~~~~~~~~y~ 64 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPLV-----SELALYDIV-N-TPGVAADLSHIN-TPAK----VTGYLGPEELKK 64 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEEecC-c-cceeehHhHhCC-Ccce----EEEecCCCchHH
Confidence 8999999 9999988877643 4553 579999998 2 2222 2454433 1111 100001134678
Q ss_pred HhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCc-cCCCHHHHhcccCC--cE
Q 007939 403 VVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMN-AECTAADAFKHAGE--NI 465 (584)
Q Consensus 403 vV~~vkptvLIG~S~~---~g~-----------Fteevv~~M~~~~~erPIIFaLSNPt~~-aE~tpeda~~wT~G--ra 465 (584)
.++. .|++|=+++. +|- .-+++++.+.+ ++...||+-.|||..- +.+..+-++++++= +-
T Consensus 65 ~~~d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~-~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~r 141 (310)
T cd01337 65 ALKG--ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAK-ACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKR 141 (310)
T ss_pred hcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHH
Confidence 8888 8987755554 332 12355666643 8899999999999831 11114444554421 12
Q ss_pred EEEeCC
Q 007939 466 VFASGS 471 (584)
Q Consensus 466 i~AsGS 471 (584)
+|++|.
T Consensus 142 viG~~~ 147 (310)
T cd01337 142 LFGVTT 147 (310)
T ss_pred EEeeec
Confidence 556664
No 175
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=76.85 E-value=5 Score=40.87 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=55.7
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV 404 (584)
||.|+|+|+.|..+|..+... | .+++++|+++=-.+ .+......+ .+...........++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~---~~~~~g~~~-~~~~~~~~~~~~~~~~~~- 64 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLD---ALNENGLRL-EDGEITVPVLAADDPAEL- 64 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHH---HHHHcCCcc-cCCceeecccCCCChhHc-
Confidence 799999999999898887653 3 36888887421110 010000000 000000000012345554
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
+ ++|++| +++. ..-++++++.++....+.-+|+.+.|.-.
T Consensus 65 ~--~~d~vi-la~k-~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 65 G--PQDLVI-LAVK-AYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred C--CCCEEE-Eecc-cccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 3 478776 4433 23468999998653445556777898754
No 176
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=76.79 E-value=3.6 Score=46.02 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.|++.+++..+..++. .+++|+|+|.+|..++..+.. .|. +++++|+.
T Consensus 317 ~G~~~~l~~~~~~~~~---k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNN---QHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 3588888888888877 999999998766666655543 343 57777763
No 177
>PRK07680 late competence protein ComER; Validated
Probab=76.49 E-value=7.2 Score=39.84 Aligned_cols=98 Identities=9% Similarity=0.201 Sum_probs=57.3
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcC-CChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~G-ls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
+|.|+|+|..|..+|..+... | +. ..+++++|++- +... .++..... .....+..|+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~v~v~~r~~------~~~~----~~~~~~~g---~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAVK----PSQLTITNRTP------AKAY----HIKERYPG---IHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCCC----cceEEEECCCH------HHHH----HHHHHcCC---eEEECCHHHH
Confidence 689999999999999887653 3 21 13578777631 0111 11111000 0112457777
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
++. +|++| ++. +....+++++.++....+..+|..++|+.+
T Consensus 60 ~~~--aDiVi-lav-~p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 60 ISQ--SDLIF-ICV-KPLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHh--CCEEE-Eec-CHHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 765 77765 332 233357888877543345668888988765
No 178
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=76.48 E-value=2.2 Score=43.49 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=29.6
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 39999999999999999998765 54 689999987
No 179
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=76.16 E-value=2.7 Score=44.54 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-chhhHHHHHHHHHH
Q 007939 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQA 345 (584)
Q Consensus 297 QGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~li~~~ 345 (584)
-+||-++.-+++.+...+|..|++ ..+-|+|| |..|.+||+.|...
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsq---atvaivGa~G~Ia~~Iar~la~~ 190 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQ---ATVAIVGATGDIASAIARWLAPK 190 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHH---CeEEEecCCchHHHHHHHHhccc
Confidence 468888888999999999999999 99999998 89999999998763
No 180
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.87 E-value=5.2 Score=43.52 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
.||.|+|+|+-|+.+|..+..-
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc
Confidence 7999999999999999998763
No 181
>PRK14851 hypothetical protein; Provisional
Probab=75.81 E-value=7.3 Score=45.77 Aligned_cols=125 Identities=19% Similarity=0.248 Sum_probs=78.5
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccC--CC------CCChhhhcccc-
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 386 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~--r~------~l~~~k~~fA~- 386 (584)
++|++ .||+|+|+|..|.-+|..|+.+.+ .+|.++|-+=+-..+ |. ++-..|..-++
T Consensus 39 ~kL~~---~~VlIvG~GGlGs~va~~Lar~GV-----------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~ 104 (679)
T PRK14851 39 ERLAE---AKVAIPGMGGVGGVHLITMVRTGI-----------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKE 104 (679)
T ss_pred HHHhc---CeEEEECcCHHHHHHHHHHHHhCC-----------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHH
Confidence 55667 999999999999899988887654 689999987333222 21 12222322222
Q ss_pred ---ccCC-c--CCcc---cCCCHHHHhcccCCcEEEeecCCCCCCC---HHHHHHhhhcCCCCCeEEecC----------
Q 007939 387 ---DPGD-F--MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFN---EEVLKAMRESDSVKPAIFAMS---------- 444 (584)
Q Consensus 387 ---~~~~-~--~~~~---~~~~L~evV~~vkptvLIG~S~~~g~Ft---eevv~~M~~~~~erPIIFaLS---------- 444 (584)
..++ . .... ...++.+.+++ .|++|-+. ..|+ +-.|...|. .+..|+|++-.
T Consensus 105 ~l~~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~---D~~~~~~r~~l~~~c~-~~~iP~i~~g~~G~~g~~~~~ 178 (679)
T PRK14851 105 QALSINPFLEITPFPAGINADNMDAFLDG--VDVVLDGL---DFFQFEIRRTLFNMAR-EKGIPVITAGPLGYSSAMLVF 178 (679)
T ss_pred HHHHhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECC---CCCcHHHHHHHHHHHH-HCCCCEEEeecccccceEEEE
Confidence 1111 0 0000 12356777776 89998544 3343 345666554 56799998754
Q ss_pred CCCCccCCCHHHHhcccCC
Q 007939 445 NPTMNAECTAADAFKHAGE 463 (584)
Q Consensus 445 NPt~~aE~tpeda~~wT~G 463 (584)
+|. ....++.|.+.++
T Consensus 179 ~p~---~~~~~~~~~~~~~ 194 (679)
T PRK14851 179 TPQ---GMGFDDYFNIGGK 194 (679)
T ss_pred cCC---CCCHhHhccCCCC
Confidence 676 5888899998877
No 182
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=75.63 E-value=2.5 Score=44.58 Aligned_cols=122 Identities=15% Similarity=0.249 Sum_probs=66.9
Q ss_pred CCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
+|.+ .+|+++|+|..|.-||+.|+.+.+ ++|.++|.+ .+.. .+|... -|.+. .+. |...
T Consensus 16 kL~~---s~VLIvG~gGLG~EiaKnLalaGV-----------g~itI~D~d-~ve~--snL~rq--f~~~~-~dI-Gk~K 74 (286)
T cd01491 16 KLQK---SNVLISGLGGLGVEIAKNLILAGV-----------KSVTLHDTK-PCSW--SDLSSQ--FYLRE-EDI-GKNR 74 (286)
T ss_pred HHhc---CcEEEEcCCHHHHHHHHHHHHcCC-----------CeEEEEcCC-ccch--hhcccC--ccCCh-HHh-CHHH
Confidence 4555 999999999999999999988654 689999997 2222 234321 12221 110 0001
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeC
Q 007939 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASG 470 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsG 470 (584)
.....+-++...|.|-|=+.. +.++++.+... .=||.+..|+..+. .- ..+.+..+..++.++
T Consensus 75 aea~~~~L~eLNp~V~V~~~~--~~~~~~~l~~f------dvVV~~~~~~~~~~--~i-n~~c~~~~ipfI~a~ 137 (286)
T cd01491 75 AEASQARLAELNPYVPVTVST--GPLTTDELLKF------QVVVLTDASLEDQL--KI-NEFCHSPGIKFISAD 137 (286)
T ss_pred HHHHHHHHHHHCCCCEEEEEe--ccCCHHHHhcC------CEEEEecCCHHHHH--HH-HHHHHHcCCEEEEEe
Confidence 123555566677777664443 33666666543 23444444443221 11 123344566666554
No 183
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=75.37 E-value=15 Score=38.69 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=71.7
Q ss_pred eEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc---ccccCCCCCChhhhccccccCCcCCcccCCCH
Q 007939 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG---LITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (584)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G---Li~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L 400 (584)
||.|+|| |..|..+|..++. .|+. ..++++|++- .+...+.++.+....+.... .+ ....+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~-----~g~~-----~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i---~~~~d- 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAK-----EDVV-----KEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EI---KISSD- 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCCC-----CEEEEEECcccccccccccchhhhchhccCCCc-EE---EECCC-
Confidence 7999998 9999999887765 3542 4699999852 11111112221100110010 11 11234
Q ss_pred HHHhcccCCcEEEeecCCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCc
Q 007939 401 LEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GEN 464 (584)
Q Consensus 401 ~evV~~vkptvLIG~S~~~---g-----------~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT--~Gr 464 (584)
.+.+++ .|+.|=+.+.| | .+-+++++.|.+ ++...+|+-.+||.. +....+++++ ..+
T Consensus 67 ~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~-~~~~~~viv~~npvd---~~t~~~~~~~g~~~~ 140 (309)
T cd05294 67 LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAE-FAPDTKILVVTNPVD---VMTYKALKESGFDKN 140 (309)
T ss_pred HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCchH---HHHHHHHHhcCCCHH
Confidence 445777 88877554432 2 235677777754 778899999999985 4444555443 123
Q ss_pred EEEEeCC
Q 007939 465 IVFASGS 471 (584)
Q Consensus 465 ai~AsGS 471 (584)
-+|++|.
T Consensus 141 ~viG~gt 147 (309)
T cd05294 141 RVFGLGT 147 (309)
T ss_pred HEeeccc
Confidence 4667764
No 184
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.12 E-value=22 Score=37.88 Aligned_cols=136 Identities=17% Similarity=0.172 Sum_probs=78.8
Q ss_pred ceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc--ccCC-CCCChhhhccccccCCcCCcccCCC
Q 007939 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi--~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
-||+|.|| |.-|..+|..|+.. |+-..+....++++|.+.-. .++. -++.+...++..+. ....+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~------~~~~~ 71 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSV------VATTD 71 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCc------eecCC
Confidence 48999999 99999999887652 33100111379999985421 1111 12222211221110 12357
Q ss_pred HHHHhcccCCcEEEeecCCCCC--CC------------HHHHHHhhhcCC-CCCeEEecCCCCCccCCCHHHHhcccCC-
Q 007939 400 LLEVVRKVKPHVLLGLSGVGGV--FN------------EEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHAGE- 463 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~~~g~--Ft------------eevv~~M~~~~~-erPIIFaLSNPt~~aE~tpeda~~wT~G- 463 (584)
+.+++++ +|++|=+.+.+.. .| +++++.|.+ ++ ..-||+-.|||.. ....-+++++.|
T Consensus 72 ~~~~l~~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD---~~t~~~~k~~~~~ 145 (325)
T cd01336 72 PEEAFKD--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDK-YAKKNVKVLVVGNPAN---TNALILLKYAPSI 145 (325)
T ss_pred HHHHhCC--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEecCcHH---HHHHHHHHHcCCC
Confidence 8889987 9998856555422 23 556677754 64 6889999999984 666666666421
Q ss_pred -cEEEEeCCCCCcc
Q 007939 464 -NIVFASGSPFENV 476 (584)
Q Consensus 464 -rai~AsGSPf~pv 476 (584)
+-.|.||+=.+..
T Consensus 146 ~~~~ig~gt~LDs~ 159 (325)
T cd01336 146 PKENFTALTRLDHN 159 (325)
T ss_pred CHHHEEeeehHHHH
Confidence 1126666554433
No 185
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=75.10 E-value=2.3 Score=42.03 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=51.7
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
++|++ .||+++|+|.-|.=+|+.|+.+ |+ ++|.++|.+- +.. .+|..+ .|... .+ -|.+
T Consensus 17 ~~L~~---s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~--snL~rq--fl~~~-~d-iG~~ 75 (197)
T cd01492 17 KRLRS---ARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTE--EDLGAQ--FLIPA-ED-LGQN 75 (197)
T ss_pred HHHHh---CcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccH--hhCCCC--ccccH-HH-cCch
Confidence 45666 9999999999999999999776 44 6899999973 222 233321 12221 11 1111
Q ss_pred cCCCHHHHhcccCCcEEEeec
Q 007939 396 EGASLLEVVRKVKPHVLLGLS 416 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S 416 (584)
....+.+.++...|++-|=..
T Consensus 76 Ka~a~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 76 RAEASLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHHHHHCCCCEEEEE
Confidence 124578888899999876544
No 186
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.09 E-value=2.4 Score=45.78 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=31.5
Q ss_pred CCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+|++ .||+++|+|..|.-||..|+.+ |+ ++|.++|.+
T Consensus 132 ~l~~---~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 132 RLLE---ARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHhc---CcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 5567 9999999999999999998776 44 689999986
No 187
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=74.27 E-value=2.8 Score=44.94 Aligned_cols=38 Identities=32% Similarity=0.617 Sum_probs=32.0
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|++ .||+|+|+|.-|.-+|..|+.+ |+ .+|.++|.+
T Consensus 20 ~~L~~---~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLRE---KHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcC---CcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 45666 9999999999999999888775 54 689999996
No 188
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=74.07 E-value=36 Score=38.68 Aligned_cols=221 Identities=19% Similarity=0.176 Sum_probs=122.7
Q ss_pred HCCCe-eeEeccCCCChHHHHHHHHhhccCccccC---cchhHHHHHHHHHHHHHHh---------CC----C--CCCCC
Q 007939 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDD---IQGTAGVALAGLLGTVRAQ---------GL----S--LTDFA 322 (584)
Q Consensus 262 ~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDD---iQGTaaV~LAgll~Alr~~---------g~----~--l~dl~ 322 (584)
..|+. +|+.--.+..| ..+-.--+.-+++.|-- -+.+|=-+++.+|+..|.. |+ . -.+|.
T Consensus 59 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~ 137 (525)
T TIGR01327 59 AAPKLKVIGRAGVGVDN-IDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELY 137 (525)
T ss_pred hCCCceEEEECCcccch-hcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccC
Confidence 34776 77766666655 33322223457777743 2456666788888877642 10 0 12344
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
++++.|+|-|..|..+|+.+... |+ +++.+|+.. .. .+ . .+. +.....+|.|
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~--~~-------~~--~-~~~----g~~~~~~l~e 189 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAF-----GM-------KVLAYDPYI--SP-------ER--A-EQL----GVELVDDLDE 189 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCC--Ch-------hH--H-Hhc----CCEEcCCHHH
Confidence 59999999999999999998754 43 588888741 11 00 0 000 0001246899
Q ss_pred HhcccCCcEEEee-c---CCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCcccc
Q 007939 403 VVRKVKPHVLLGL-S---GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDL 478 (584)
Q Consensus 403 vV~~vkptvLIG~-S---~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~~ 478 (584)
+++. .|+++=. . ...+.|+++.+..|. +..++.=.|.-.---|..-.+|++ .|+.-.|.=-=|.+-..
T Consensus 190 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~ 261 (525)
T TIGR01327 190 LLAR--ADFITVHTPLTPETRGLIGAEELAKMK----KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPP 261 (525)
T ss_pred HHhh--CCEEEEccCCChhhccCcCHHHHhcCC----CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCC
Confidence 9887 7887621 1 124789999999983 466777777655433444444544 67665442111111000
Q ss_pred CCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCC
Q 007939 479 GNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMT 527 (584)
Q Consensus 479 ~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~alA~~v~ 527 (584)
. .. .--+..|+.+-|=+|-....+ ...|...+++.+-+...
T Consensus 262 ~-~~--pL~~~~nvi~TPHia~~t~e~-----~~~~~~~~~~ni~~~~~ 302 (525)
T TIGR01327 262 T-DN--PLFDLDNVIATPHLGASTREA-----QENVATQVAEQVLDALK 302 (525)
T ss_pred C-CC--hhhcCCCeEECCCccccHHHH-----HHHHHHHHHHHHHHHHc
Confidence 0 11 112345888888877433332 23344445555555444
No 189
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=73.87 E-value=4.5 Score=43.04 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=52.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc--cccCC---CCCChhhhccccccCCcCCcccCC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKER---KNLDPAAAPFAKDPGDFMGLREGA 398 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL--i~~~r---~~l~~~k~~fA~~~~~~~~~~~~~ 398 (584)
.||.|+|+|+-|..+|..+... | . -.+|..|..-. +.+.+ +.+... ..+ +. . ..-..
T Consensus 8 mkI~IiGaGa~G~alA~~La~~-----g-~-----v~l~~~~~~~~~~i~~~~~~~~~l~~~-~~l--~~-~---i~~t~ 69 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR-----G-P-----TLQWVRSAETADDINDNHRNSRYLGND-VVL--SD-T---LRATT 69 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----C-C-----EEEEeCCHHHHHHHHhcCCCcccCCCC-ccc--CC-C---eEEEC
Confidence 6899999999999999987653 3 1 23554332210 00000 011100 000 00 0 01124
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 399 ~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
++.++++. +|++| ++. +--+.+++++.++....+.-+|..++|--.
T Consensus 70 d~~~a~~~--aDlVi-lav-ps~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 70 DFAEAANC--ADVVV-MGV-PSHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred CHHHHHhc--CCEEE-EEe-CHHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 57777766 56544 332 233677888877543444445667777443
No 190
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=73.24 E-value=10 Score=37.75 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=44.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChh-hhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA-FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~e-eA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
+||.|+|.|..+ .+|.-+...+.. ++..+ -+..-+.+.|..-+++.- .+-..+-.-|++. |.-
T Consensus 42 ~rI~~~G~GgSa-~~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~-and~~~~~~f~~q------------l~~ 105 (196)
T PRK10886 42 NKILCCGNGTSA-ANAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAI-ANDRLHDEVYAKQ------------VRA 105 (196)
T ss_pred CEEEEEECcHHH-HHHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHH-hccccHHHHHHHH------------HHH
Confidence 899999999887 477777776541 11000 000112222222222210 0111122233332 222
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHh
Q 007939 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAM 430 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~g~Fteevv~~M 430 (584)
.. -+-|++|+.|..|. |+++++.+
T Consensus 106 ~~--~~gDvli~iS~SG~--s~~v~~a~ 129 (196)
T PRK10886 106 LG--HAGDVLLAISTRGN--SRDIVKAV 129 (196)
T ss_pred cC--CCCCEEEEEeCCCC--CHHHHHHH
Confidence 22 34799999998666 48899887
No 191
>PLN02306 hydroxypyruvate reductase
Probab=73.13 E-value=21 Score=39.16 Aligned_cols=204 Identities=19% Similarity=0.200 Sum_probs=104.3
Q ss_pred ccCccccC---cchhHHHHHHHHHHHHHHh---------CC---------CCCCCCCceEEEeCcchhhHHHHHHHHHHH
Q 007939 288 RFCMFNDD---IQGTAGVALAGLLGTVRAQ---------GL---------SLTDFADQKIVVVGAGSAGLGVLKMAVQAA 346 (584)
Q Consensus 288 ~~~~FNDD---iQGTaaV~LAgll~Alr~~---------g~---------~l~dl~~~riv~~GAGsAg~GiA~li~~~~ 346 (584)
.+.+.|-- -..+|=-+++-+|+.+|.. |. .-.+|.++++.|+|.|..|..+|+++..+|
T Consensus 109 gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~f 188 (386)
T PLN02306 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (386)
T ss_pred CCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 35555532 1234445677777776542 10 012456699999999999999999986432
Q ss_pred HHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccc-----cCCcCCcccCCCHHHHhcccCCcEEEee----cC
Q 007939 347 ARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-----PGDFMGLREGASLLEVVRKVKPHVLLGL----SG 417 (584)
Q Consensus 347 ~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~-----~~~~~~~~~~~~L~evV~~vkptvLIG~----S~ 417 (584)
|+ +++.+|+..- +.+......+-.. ..+. ......+|.|+++. .|+++-. ..
T Consensus 189 ----Gm-------~V~~~d~~~~-----~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~L~ell~~--sDiV~lh~Plt~~ 249 (386)
T PLN02306 189 ----KM-------NLIYYDLYQS-----TRLEKFVTAYGQFLKANGEQPV-TWKRASSMEEVLRE--ADVISLHPVLDKT 249 (386)
T ss_pred ----CC-------EEEEECCCCc-----hhhhhhhhhhcccccccccccc-cccccCCHHHHHhh--CCEEEEeCCCChh
Confidence 33 6888887421 0111100111100 0000 00012479999988 8998863 12
Q ss_pred CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHh-cc-cCCcEEEEeCCCCCccccCCCeeeeccCccccccc
Q 007939 418 VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF-KH-AGENIVFASGSPFENVDLGNGKIGHVNQANNMYLF 495 (584)
Q Consensus 418 ~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~-~w-T~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iF 495 (584)
..|.|+++.++.|. +.-++.=.|. .++-=|+|+ ++ ..|+.-.|.=-=|++-...+. .--+..|+.+-
T Consensus 250 T~~lin~~~l~~MK----~ga~lIN~aR----G~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~---~L~~~pNVilT 318 (386)
T PLN02306 250 TYHLINKERLALMK----KEAVLVNASR----GPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKP---GLADMKNAVVV 318 (386)
T ss_pred hhhhcCHHHHHhCC----CCeEEEECCC----ccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcc---hHhhCCCEEEC
Confidence 24889999999993 4556665553 344333333 11 155543331001110000101 11245688888
Q ss_pred hhhHHHHHHhCCcccCHHHHHHHHHHHhccC
Q 007939 496 PGIGLGTLLSGARFITDGMLQQAAECLASYM 526 (584)
Q Consensus 496 PGiglG~~~~~a~~Itd~m~~aAA~alA~~v 526 (584)
|=++-....+ ...|...+++-+....
T Consensus 319 PHiag~T~e~-----~~~~~~~~~~ni~~~~ 344 (386)
T PLN02306 319 PHIASASKWT-----REGMATLAALNVLGKL 344 (386)
T ss_pred CccccCcHHH-----HHHHHHHHHHHHHHHH
Confidence 8876322111 2344444555554444
No 192
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=73.10 E-value=13 Score=38.75 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=57.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccC-C--cC--CcccCC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG-D--FM--GLREGA 398 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~-~--~~--~~~~~~ 398 (584)
.||.|+|+|..|..+|..+..+ | .+++++|+..-.. .+......+-.... + +. ...-..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 66 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGD----ELRAHGLTLTDYRGRDVRVPPSAIAFST 66 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHH----HHHhcCceeecCCCcceecccceeEecc
Confidence 5899999999999999988764 4 2688888742110 01000000000000 0 00 000012
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 007939 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (584)
Q Consensus 399 ~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~ 449 (584)
++ ++++. +|++|=+.. .-..+++++.+.....+..+|..++|....
T Consensus 67 ~~-~~~~~--~D~vil~vk--~~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 67 DP-AALAT--ADLVLVTVK--SAATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred Ch-hhccC--CCEEEEEec--CcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 33 45544 788774332 223478888886544566788888897653
No 193
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=72.92 E-value=7.2 Score=41.84 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=28.1
Q ss_pred CCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
++.||||+|+|.||+..|..|... |.+ .+|.++|+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~~-----~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GFT-----GELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CCC-----CCEEEeCCC
Confidence 347999999999999999988663 322 368888765
No 194
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=72.55 E-value=3.3 Score=44.55 Aligned_cols=38 Identities=37% Similarity=0.521 Sum_probs=32.2
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|++ .||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~---~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFD---AKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhC---CeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 45666 9999999999999999888765 44 689999997
No 195
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=72.54 E-value=8.7 Score=40.27 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=72.0
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC-cccccCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~-GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV 404 (584)
|.|+|+|..|..+|-.++. .|+. ..|.++|.+ .++..-..+|.+....+... .. ....+ .+.+
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~g~~~DL~~~~~~~~~~--~i---~~~~~-~~~l 64 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAKGDALDLSHASAFLATG--TI---VRGGD-YADA 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHhHHHhccccCCC--eE---EECCC-HHHh
Confidence 5789999999888865554 3554 479999973 22111112454444332111 00 01233 4577
Q ss_pred cccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcEEEE
Q 007939 405 RKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIVFA 468 (584)
Q Consensus 405 ~~vkptvLIG~S~~---~g~-----------Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT--~Grai~A 468 (584)
++ .|++|=+.+. +|- .=+++++.+. +++..-+|+-.|||.. +...-+.+++ +-+-+|+
T Consensus 65 ~~--aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~-~~~p~~~viv~sNP~d---~~~~~~~~~sg~~~~kviG 138 (300)
T cd00300 65 AD--ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLK-KYGPDAIILVVSNPVD---ILTYVAQKLSGLPKNRVIG 138 (300)
T ss_pred CC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEccChHH---HHHHHHHHHhCcCHHHEEe
Confidence 77 7887644333 331 1145666664 4889999999999984 6666666653 2234667
Q ss_pred eCCC
Q 007939 469 SGSP 472 (584)
Q Consensus 469 sGSP 472 (584)
+|.-
T Consensus 139 ~gt~ 142 (300)
T cd00300 139 SGTL 142 (300)
T ss_pred cCCc
Confidence 6543
No 196
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=72.38 E-value=10 Score=40.71 Aligned_cols=115 Identities=21% Similarity=0.345 Sum_probs=66.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC-cccccCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~-GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
.||.++|||..|-..|-+|+. +++. +.+.|+|-. +...-..-+|.+.....-.+.. . ....+ .+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~-i---~~~~~-y~ 65 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALDLSHAAAPLGSDVK-I---TGDGD-YE 65 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcchhhcchhccCceE-E---ecCCC-hh
Confidence 389999999999888888733 3554 379999987 1111111234332211111111 0 01123 45
Q ss_pred HhcccCCcEEE---eecCCCCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhc
Q 007939 403 VVRKVKPHVLL---GLSGVGGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (584)
Q Consensus 403 vV~~vkptvLI---G~S~~~g~-----------Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~ 459 (584)
.++. .|+.| |+...||- .-+++.+.+++ ++...||+-.|||.. .+.--+++
T Consensus 66 ~~~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~-~~~d~ivlVvtNPvD---~~ty~~~k 130 (313)
T COG0039 66 DLKG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAK-YAPDAIVLVVTNPVD---ILTYIAMK 130 (313)
T ss_pred hhcC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHh-hCCCeEEEEecCcHH---HHHHHHHH
Confidence 5666 78766 33444551 33567777764 889999999999984 44444444
No 197
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=72.28 E-value=5.7 Score=44.01 Aligned_cols=193 Identities=10% Similarity=0.122 Sum_probs=96.9
Q ss_pred ccccccCChhhHHHHHhcCCCCCceEE-EEecCceeeccCCCCCCcccccchh-hhhhh-----hhcCCCCCCceeEEee
Q 007939 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGK-LDVYV-----AAAGINPQRILPVMLD 221 (584)
Q Consensus 149 Glyis~~D~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGK-l~LY~-----a~gGI~P~~~LPV~LD 221 (584)
|-|-...|-..+.++|+.. ++++. ++|.++.+=-|-..+...+-|.+.- ...+. .=-||. .+...
T Consensus 204 G~~~~~~d~~el~~lL~~~---Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP---~~~~~-- 275 (456)
T TIGR01283 204 GEFNVAGEFWHVKPLLEKL---GIRVLATITGDSRYAEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIP---YFEGS-- 275 (456)
T ss_pred cCCCCcccHHHHHHHHHHc---CCeEEEEeCCCCcHHHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCC---EEecC--
Confidence 4444445666788888865 67776 5777766666666666555554322 11121 111444 22111
Q ss_pred ccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCeeeEeccCCCChHHHHHHHHhhccCccccCcchhHH
Q 007939 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG 301 (584)
Q Consensus 222 vGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaa 301 (584)
++|+ +-.++|+..+.+.+..--+. .++-.++++.+.+
T Consensus 276 -------------~~G~-----------~~T~~~L~~Ia~~lg~~~~~------~~~~~~i~~e~~~------------- 312 (456)
T TIGR01283 276 -------------FYGI-----------EDTSKALRDIADLFGDEELL------KRTEELIAREEAK------------- 312 (456)
T ss_pred -------------CCcH-----------HHHHHHHHHHHHHhCChHHH------HHHHHHHHHHHHH-------------
Confidence 1221 23677777777766421000 1233344444433
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhh
Q 007939 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA 381 (584)
Q Consensus 302 V~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k 381 (584)
+..++......|.. .|+++++.+.-..++++++.+ .|+. +..+.+. ....++....+
T Consensus 313 -----~~~~l~~~~~~L~G---krv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d~~~l~ 369 (456)
T TIGR01283 313 -----IRPALEPYRERLKG---KKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEEDYARIR 369 (456)
T ss_pred -----HHHHHHHHHHHcCC---CEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHHHHHHH
Confidence 23333333345566 899998888888899887654 4663 3333221 11111111110
Q ss_pred hccccccCCcCCcccCCCHHHHhcccCCcEEEeec
Q 007939 382 APFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (584)
Q Consensus 382 ~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S 416 (584)
..+ .+...+-...+...+.+.++..+||++||-|
T Consensus 370 ~~~-~~~~~v~~~~d~~e~~~~i~~~~pDl~ig~~ 403 (456)
T TIGR01283 370 ELM-GEGTVMLDDANPRELLKLLLEYKADLLIAGG 403 (456)
T ss_pred HHc-CCCeEEEeCCCHHHHHHHHhhcCCCEEEEcc
Confidence 111 1100000001234588888999999999854
No 198
>PRK06487 glycerate dehydrogenase; Provisional
Probab=72.26 E-value=57 Score=34.65 Aligned_cols=192 Identities=17% Similarity=0.164 Sum_probs=107.6
Q ss_pred ccCccccC---cchhHHHHHHHHHHHHHHh---------CC------------CCCCCCCceEEEeCcchhhHHHHHHHH
Q 007939 288 RFCMFNDD---IQGTAGVALAGLLGTVRAQ---------GL------------SLTDFADQKIVVVGAGSAGLGVLKMAV 343 (584)
Q Consensus 288 ~~~~FNDD---iQGTaaV~LAgll~Alr~~---------g~------------~l~dl~~~riv~~GAGsAg~GiA~li~ 343 (584)
.+.+.|-- -+.+|=-+++-+|+..|.. |+ ...+|.++++.|+|.|..|.-||+++.
T Consensus 89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~ 168 (317)
T PRK06487 89 GITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168 (317)
T ss_pred CCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHh
Confidence 35555532 2355666778888776642 11 113566699999999999999999886
Q ss_pred HHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEee----cCCC
Q 007939 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL----SGVG 419 (584)
Q Consensus 344 ~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~----S~~~ 419 (584)
.. |+ +++.+|+.+- +. .+ ...+|.|+++. .|+++=. ....
T Consensus 169 ~f-----gm-------~V~~~~~~~~-----~~-------~~----------~~~~l~ell~~--sDiv~l~lPlt~~T~ 212 (317)
T PRK06487 169 AF-----GM-------RVLIGQLPGR-----PA-------RP----------DRLPLDELLPQ--VDALTLHCPLTEHTR 212 (317)
T ss_pred hC-----CC-------EEEEECCCCC-----cc-------cc----------cccCHHHHHHh--CCEEEECCCCChHHh
Confidence 54 33 5777776520 00 00 12469999988 8988732 2224
Q ss_pred CCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhH
Q 007939 420 GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499 (584)
Q Consensus 420 g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGig 499 (584)
+.|+++.+..|. +..++.=.|.=.---|----+|++ +|+.--|.=-=|.+-..+.+..+.--+..|+++-|=++
T Consensus 213 ~li~~~~~~~mk----~ga~lIN~aRG~vVde~AL~~AL~--~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia 286 (317)
T PRK06487 213 HLIGARELALMK----PGALLINTARGGLVDEQALADALR--SGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSA 286 (317)
T ss_pred cCcCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHH--cCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccc
Confidence 899999999994 466777655433211222223333 67765443222211111111111100356899999877
Q ss_pred HHHHHhCCcccCHHHHHHHHHHHhccC
Q 007939 500 LGTLLSGARFITDGMLQQAAECLASYM 526 (584)
Q Consensus 500 lG~~~~~a~~Itd~m~~aAA~alA~~v 526 (584)
-.. ..-...|...+++.|.+..
T Consensus 287 ~~t-----~e~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 287 WGS-----REARQRIVGQLAENARAFF 308 (317)
T ss_pred cCC-----HHHHHHHHHHHHHHHHHHH
Confidence 322 2223445555555555544
No 199
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=71.89 E-value=3.9 Score=42.74 Aligned_cols=105 Identities=24% Similarity=0.294 Sum_probs=55.3
Q ss_pred CceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcC-CcccCCCH
Q 007939 323 DQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFM-GLREGASL 400 (584)
Q Consensus 323 ~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~-~~~~~~~L 400 (584)
..+|+|.|| |-.|..+++.|++ .| .+++.+|++-- ......+ ..........+. ...+..++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~---~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~ 67 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPP---TSPNLFE-LLNLAKKIEDHFGDIRDAAKL 67 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCc---cchhHHH-HHhhcCCceEEEccCCCHHHH
Confidence 479999996 6666666666654 34 35777776521 1011100 000000000000 01233568
Q ss_pred HHHhcccCCcEEEeecCCCCC----------------CCHHHHHHhhhcCC-CCCeEEecC
Q 007939 401 LEVVRKVKPHVLLGLSGVGGV----------------FNEEVLKAMRESDS-VKPAIFAMS 444 (584)
Q Consensus 401 ~evV~~vkptvLIG~S~~~g~----------------Fteevv~~M~~~~~-erPIIFaLS 444 (584)
.++++..+||++|=+.+.+.. .+..++++|.. .+ .+.+||.=|
T Consensus 68 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~-~~~~~~iv~~SS 127 (349)
T TIGR02622 68 RKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRA-IGSVKAVVNVTS 127 (349)
T ss_pred HHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHh-cCCCCEEEEEec
Confidence 888988899999977764311 13455666643 33 357888654
No 200
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=71.87 E-value=2.1 Score=52.33 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=33.2
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|++ .||+++|+|.-|+-+++.|+.+.+ ..|- ..+|.++|-+
T Consensus 415 ~kL~~---~kVlvvGaGGlG~e~lknLal~Gv-~~~~-----~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQN---LNIFLVGCGAIGCEMLKNFALMGV-GTGK-----KGMITVTDPD 457 (1008)
T ss_pred HHHhh---CcEEEECCChHHHHHHHHHHHhCC-CcCC-----CCeEEEECCC
Confidence 45666 999999999999999999888654 1111 2689999987
No 201
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=71.80 E-value=19 Score=38.50 Aligned_cols=136 Identities=17% Similarity=0.133 Sum_probs=81.1
Q ss_pred eEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc--ccC-CCCCChhhhccccccCCcCCcccCCCH
Q 007939 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGASL 400 (584)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi--~~~-r~~l~~~k~~fA~~~~~~~~~~~~~~L 400 (584)
||.|+|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. .+. .-+|.+...++... . ....+.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~-~-----~~~~~~ 69 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDG-V-----VPTHDP 69 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCc-e-----eccCCh
Confidence 6899999 99999999877653 33100000159999974221 111 11344433233211 0 012256
Q ss_pred HHHhcccCCcEEEeecCCC---CC-C----------CHHHHHHhhhcC-CCCCeEEecCCCCCccCCCHHHHhcccCC--
Q 007939 401 LEVVRKVKPHVLLGLSGVG---GV-F----------NEEVLKAMRESD-SVKPAIFAMSNPTMNAECTAADAFKHAGE-- 463 (584)
Q Consensus 401 ~evV~~vkptvLIG~S~~~---g~-F----------teevv~~M~~~~-~erPIIFaLSNPt~~aE~tpeda~~wT~G-- 463 (584)
.+.+++ .|++|=+.+.+ |- . =+++++.|.+ + ++.-||+-.|||. .+..--+++++.+
T Consensus 70 ~~~~~~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~-~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~ 143 (324)
T TIGR01758 70 AVAFTD--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDK-LAKKDCKVLVVGNPA---NTNALVLSNYAPSIP 143 (324)
T ss_pred HHHhCC--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEeCCcH---HHHHHHHHHHcCCCC
Confidence 778887 88888555543 21 1 1456777754 6 4889999999998 4777777777632
Q ss_pred cEEEEeCCCCCccc
Q 007939 464 NIVFASGSPFENVD 477 (584)
Q Consensus 464 rai~AsGSPf~pv~ 477 (584)
+-+|.||+=.+...
T Consensus 144 ~~vig~gt~LDs~R 157 (324)
T TIGR01758 144 PKNFSALTRLDHNR 157 (324)
T ss_pred cceEEEeeehHHHH
Confidence 22888887666553
No 202
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.53 E-value=18 Score=36.60 Aligned_cols=121 Identities=16% Similarity=0.200 Sum_probs=69.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.||.|+|+|..|..+|..+... |.. ..+++++|++. +.....+..| .- .-..+..++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~~----~~~v~v~~r~~------~~~~~~~~~~---g~-----~~~~~~~~~ 59 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GVP----AKDIIVSDPSP------EKRAALAEEY---GV-----RAATDNQEA 59 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CCC----cceEEEEcCCH------HHHHHHHHhc---CC-----eecCChHHH
Confidence 5799999999999898887653 321 14678887641 1111111111 00 012456777
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC-CcEEEEeCCCCCccccC
Q 007939 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG-ENIVFASGSPFENVDLG 479 (584)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~-Grai~AsGSPf~pv~~~ 479 (584)
++. +|++| ++. +....+++++.+.. +. ..+|..++|-++. ++.-+|.. |.- +...-|..|..+.
T Consensus 60 ~~~--advVi-l~v-~~~~~~~v~~~l~~-~~-~~~vvs~~~gi~~-----~~l~~~~~~~~~-iv~~~P~~p~~~~ 124 (267)
T PRK11880 60 AQE--ADVVV-LAV-KPQVMEEVLSELKG-QL-DKLVVSIAAGVTL-----ARLERLLGADLP-VVRAMPNTPALVG 124 (267)
T ss_pred Hhc--CCEEE-EEc-CHHHHHHHHHHHHh-hc-CCEEEEecCCCCH-----HHHHHhcCCCCc-EEEecCCchHHHc
Confidence 765 77766 443 34456888888853 22 3588899997752 33334543 322 3335676666653
No 203
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=71.43 E-value=3.7 Score=42.95 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=33.1
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi 370 (584)
.+|++ .+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-
T Consensus 26 ~kL~~---s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~ 66 (268)
T PRK15116 26 QLFAD---AHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVC 66 (268)
T ss_pred HHhcC---CCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEec
Confidence 34566 9999999999999999888776 44 689999987443
No 204
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=70.78 E-value=3.9 Score=39.71 Aligned_cols=31 Identities=35% Similarity=0.672 Sum_probs=24.5
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+|.|+|||..|.|||-+++.+ |. ++.++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 689999999999999998875 43 68889885
No 205
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=70.60 E-value=1.1e+02 Score=33.71 Aligned_cols=222 Identities=19% Similarity=0.208 Sum_probs=124.3
Q ss_pred HHCCCe-eeEeccCCCChHHHHHHHHhhccCccccCc---chhHHHHHHHHHHHHHHh---------C---C---CCCCC
Q 007939 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L---SLTDF 321 (584)
Q Consensus 261 ~~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------g---~---~l~dl 321 (584)
...|+. .|+.-=.+..| ..+-.--+.-++++|--- ..+|=-+++.+|+.+|.. | + .-.+|
T Consensus 71 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L 149 (409)
T PRK11790 71 AAAEKLVAIGCFCIGTNQ-VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEV 149 (409)
T ss_pred hhCCCCeEEEECceeccc-ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccC
Confidence 345665 66655555554 333333334588888532 345556788899888742 1 0 11345
Q ss_pred CCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHH
Q 007939 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (584)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ 401 (584)
.+.++.|+|.|..|.-+|+.+... |+ +++.+|+.. ..... .+ ....+|.
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-----Gm-------~V~~~d~~~-----~~~~~-----~~---------~~~~~l~ 198 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-----GM-------RVYFYDIED-----KLPLG-----NA---------RQVGSLE 198 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCCc-----ccccC-----Cc---------eecCCHH
Confidence 559999999999999999988765 33 688888631 00000 00 0124799
Q ss_pred HHhcccCCcEEEeec----CCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCC-CCcc
Q 007939 402 EVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSP-FENV 476 (584)
Q Consensus 402 evV~~vkptvLIG~S----~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSP-f~pv 476 (584)
|+++. .|+++=.- ...+.|+++.+..|. +.-++.-.|.-.---|---.+|++ .|+ |.+.|.- |++-
T Consensus 199 ell~~--sDiVslh~Plt~~T~~li~~~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~-i~gaalDVf~~E 269 (409)
T PRK11790 199 ELLAQ--SDVVSLHVPETPSTKNMIGAEELALMK----PGAILINASRGTVVDIDALADALK--SGH-LAGAAIDVFPVE 269 (409)
T ss_pred HHHhh--CCEEEEcCCCChHHhhccCHHHHhcCC----CCeEEEECCCCcccCHHHHHHHHH--cCC-ceEEEEcCCCCC
Confidence 99988 88876321 113789999999994 456777666543322222233444 566 3333321 2211
Q ss_pred ccCCCe--eeeccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHhccCCC
Q 007939 477 DLGNGK--IGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAECLASYMTD 528 (584)
Q Consensus 477 ~~~~G~--~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~alA~~v~~ 528 (584)
..+... ...--+..|+++-|=+|-...-+ ...|...+++.+......
T Consensus 270 P~~~~~~~~~pL~~~~nvilTPHia~~t~ea-----~~~~~~~~~~nl~~~~~~ 318 (409)
T PRK11790 270 PKSNGDPFESPLRGLDNVILTPHIGGSTQEA-----QENIGLEVAGKLVKYSDN 318 (409)
T ss_pred CCCccccccchhhcCCCEEECCcCCCCHHHH-----HHHHHHHHHHHHHHHHcC
Confidence 110000 00112356899999887443222 234555566666665543
No 206
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=70.48 E-value=23 Score=37.75 Aligned_cols=128 Identities=20% Similarity=0.311 Sum_probs=75.6
Q ss_pred eEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007939 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
||.|+|| |..|..+|-+|+. .|+- ..+.|+|.+. ..+. -+|.+.. ... ...+.....++.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~--a~g~a~DL~~~~----~~~-~i~~~~~~~~~~~ 63 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPYV-----SELSLYDIAG--AAGVAADLSHIP----TAA-SVKGFSGEEGLEN 63 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEecCCC--CcEEEchhhcCC----cCc-eEEEecCCCchHH
Confidence 6899999 9999999887754 2443 5799999876 1221 1344322 110 0000001124678
Q ss_pred HhcccCCcEEEeecCCC---CC-------CC----HHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHHhccc---CCc
Q 007939 403 VVRKVKPHVLLGLSGVG---GV-------FN----EEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADAFKHA---GEN 464 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~---g~-------Ft----eevv~~M~~~~~erPIIFaLSNPt~-~aE~tpeda~~wT---~Gr 464 (584)
+++. .|++|=+.+.+ |- .+ +++.+.+.+ ++..-||+-.|||.. ++.+...-+++++ ..|
T Consensus 64 ~~~d--aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~-~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~r 140 (312)
T TIGR01772 64 ALKG--ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAE-SCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNK 140 (312)
T ss_pred HcCC--CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHH-hCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHH
Confidence 8888 89877444443 31 11 345556643 789999999999984 2223555565543 223
Q ss_pred EEEEeCCCCC
Q 007939 465 IVFASGSPFE 474 (584)
Q Consensus 465 ai~AsGSPf~ 474 (584)
+|++|. .+
T Consensus 141 -ViG~g~-LD 148 (312)
T TIGR01772 141 -LFGVTT-LD 148 (312)
T ss_pred -EEeeec-ch
Confidence 677775 55
No 207
>PRK06270 homoserine dehydrogenase; Provisional
Probab=70.05 E-value=38 Score=36.26 Aligned_cols=110 Identities=23% Similarity=0.256 Sum_probs=64.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHH---HHHHcCCChhhhcCcEEEEecCcccccCCCCCChhh-hccccccCC---cCCccc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA---AARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFAKDPGD---FMGLRE 396 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~---~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k-~~fA~~~~~---~~~~~~ 396 (584)
.||.++|.|..|.+++++|.+. +.++.|+.. +=.-++|++|.+.+.+. ++..+ ..+++.... +.+...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~----~vvai~d~~~~~~~~~G-i~~~~~~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDL----KVVAIADSSGSAIDPDG-LDLELALKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCCcccCcCC-CCHHHHHHHHhccCCcccCccccc
Confidence 6899999999999999998763 222234321 22456799998887653 33221 223332111 000001
Q ss_pred CCCHHHHhcccCCcEEEeecCC---CCCCCHHH-HHHhhhcCCCCCeEE
Q 007939 397 GASLLEVVRKVKPHVLLGLSGV---GGVFNEEV-LKAMRESDSVKPAIF 441 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG~S~~---~g~Fteev-v~~M~~~~~erPIIF 441 (584)
..++.|+++...+|++|=++.. ++-...++ .+++ + +..+||.
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL-~--~GkhVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKAL-E--RGKHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHH-H--CCCEEEc
Confidence 2479999988889999976642 12223455 4444 2 5678887
No 208
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=69.89 E-value=5.9 Score=32.82 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=28.9
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccc
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~ 371 (584)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999888553 3 5799999877666
No 209
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=69.86 E-value=6.7 Score=40.82 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=70.3
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCC-CCChhhhccccccCCcCCcccCCCHHHHh
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~-~l~~~k~~fA~~~~~~~~~~~~~~L~evV 404 (584)
|.|+|||..|.++|..++. .|+. .++|+|.+==..+... ++.+.. .+...... .....+. +.+
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l~------eV~L~Di~e~~~~g~~~dl~~~~-~~~~~~~~---I~~t~d~-~~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KELG------DVVLLDIVEGLPQGKALDISQAA-PILGSDTK---VTGTNDY-EDI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCCc------EEEEEeCCCcHHHHHHHHHHHhh-hhcCCCeE---EEEcCCH-HHh
Confidence 5799999999999887754 2431 5999998510000000 111110 00000000 0112444 457
Q ss_pred cccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCc---EEE
Q 007939 405 RKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGEN---IVF 467 (584)
Q Consensus 405 ~~vkptvLIG~S~~~---g~-----------Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Gr---ai~ 467 (584)
+. .|++|=+.+.| |- .-+++++.|.+ ++...+|+-.|||.. .....+++++ |. -+|
T Consensus 65 ~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~-~~p~~~iIv~sNP~d---i~t~~~~~~s-~~~~~rvi 137 (300)
T cd01339 65 AG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKK-YAPNAIVIVVTNPLD---VMTYVAYKAS-GFPRNRVI 137 (300)
T ss_pred CC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHh-CCCHHHEE
Confidence 76 88887333322 21 22477888854 888889999999995 5555566665 32 477
Q ss_pred EeCCCC
Q 007939 468 ASGSPF 473 (584)
Q Consensus 468 AsGSPf 473 (584)
++|+-.
T Consensus 138 Glgt~l 143 (300)
T cd01339 138 GMAGVL 143 (300)
T ss_pred EecchH
Confidence 888543
No 210
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=69.84 E-value=4.4 Score=38.34 Aligned_cols=30 Identities=30% Similarity=0.634 Sum_probs=20.7
Q ss_pred EEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 327 v~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+|+|||.||+..|-.|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977755 455 348899987
No 211
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=69.70 E-value=20 Score=39.63 Aligned_cols=82 Identities=9% Similarity=0.005 Sum_probs=45.9
Q ss_pred HHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhcccccc
Q 007939 309 GTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 388 (584)
Q Consensus 309 ~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~ 388 (584)
.++.-....|.. .|++++|-+.-..|+++.+.+ .|+.. ..+. .+.+ .+.+ +.. ...
T Consensus 300 ~~l~~~~~~l~G---krvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~-~~~~------~~~~----~~~-~~~ 355 (432)
T TIGR01285 300 DAMLDTHFFLGG---KKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAV-TTTG------SPLL----QKL-PVE 355 (432)
T ss_pred HHHHHHHHhhCC---CEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEE-eCCC------CHHH----HhC-CcC
Confidence 444444445556 999999988888999998754 46632 1111 1111 1111 000 000
Q ss_pred CCcCCcccCCCHHHHhcccCCcEEEeec
Q 007939 389 GDFMGLREGASLLEVVRKVKPHVLLGLS 416 (584)
Q Consensus 389 ~~~~~~~~~~~L~evV~~vkptvLIG~S 416 (584)
.-+. .+...|++.+++.+||++||-|
T Consensus 356 ~~~~--~D~~~l~~~i~~~~~dliig~s 381 (432)
T TIGR01285 356 TVVI--GDLEDLEDLACAAGADLLITNS 381 (432)
T ss_pred cEEe--CCHHHHHHHHhhcCCCEEEECc
Confidence 0000 1234588899999999999876
No 212
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=69.41 E-value=27 Score=36.27 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=26.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|.|+|+|..|..+|..+... |.. .+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~~-----~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GLA-----GEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC-----cEEEEEECC
Confidence 6899999999999998887653 431 368888874
No 213
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.73 E-value=5.4 Score=37.73 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=53.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.||-|+|.|..|.+||+.|... |. +++.+|+. ++.-+.+..... ....|+.|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----------~~~~~~~~~~g~-----~~~~s~~e~ 54 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----------PEKAEALAEAGA-----EVADSPAEA 54 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----------HHHHHHHHHTTE-----EEESSHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----------hhhhhhhHHhhh-----hhhhhhhhH
Confidence 5899999999999999999653 43 58888863 111123332211 124679999
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHH--hhhcCCCCCeEEecCCCCC
Q 007939 404 VRKVKPHVLLGLSGVGGVFNEEVLKA--MRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~--M~~~~~erPIIFaLSNPt~ 448 (584)
++. .+++|=+-. .+.=.++++.. +.+...+..||.=+|+-++
T Consensus 55 ~~~--~dvvi~~v~-~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p 98 (163)
T PF03446_consen 55 AEQ--ADVVILCVP-DDDAVEAVLFGENILAGLRPGKIIIDMSTISP 98 (163)
T ss_dssp HHH--BSEEEE-SS-SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H
T ss_pred hhc--ccceEeecc-cchhhhhhhhhhHHhhccccceEEEecCCcch
Confidence 988 577664321 11223555554 3333456777777777655
No 214
>PRK07411 hypothetical protein; Validated
Probab=68.43 E-value=4.1 Score=44.49 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=33.0
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|++ .||+|+|+|.-|.-+|..|+.+.+ ++|.++|.+
T Consensus 34 ~~L~~---~~VlivG~GGlG~~va~~La~~Gv-----------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKA---ASVLCIGTGGLGSPLLLYLAAAGI-----------GRIGIVDFD 71 (390)
T ss_pred HHHhc---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEECCC
Confidence 55667 999999999999999999988755 689999987
No 215
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=67.88 E-value=4.7 Score=43.15 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.6
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
||+++|+|.-|.-+|+.|+.+.+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 68999999999999999988755 689999986
No 216
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=67.69 E-value=18 Score=44.65 Aligned_cols=98 Identities=8% Similarity=0.100 Sum_probs=53.6
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhc------------Cc---EE--EEecCccccc-CCCCCChhhhcc
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR------------NK---FF--LLDKDGLITK-ERKNLDPAAAPF 384 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~------------~~---i~--lvDs~GLi~~-~r~~l~~~k~~f 384 (584)
--+|||.|+|..|.|.++++..... + =++.++-+ ++ +| .+.+.-.+.+ +..+-=+.+..|
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~~~lg~-~-~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~ 280 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIFKLLPH-T-FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY 280 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHHhhcCC-C-ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence 4899999999999999998876533 1 13333321 11 12 0111111111 101101112233
Q ss_pred ccccCCcCCcccC-CC-HHHHhcccCCcEEEeec----CCCCCCCHH-HHHHhh
Q 007939 385 AKDPGDFMGLREG-AS-LLEVVRKVKPHVLLGLS----GVGGVFNEE-VLKAMR 431 (584)
Q Consensus 385 A~~~~~~~~~~~~-~~-L~evV~~vkptvLIG~S----~~~g~Ftee-vv~~M~ 431 (584)
+++. .+ .. +++++.. .|+|||+= ..|..+|++ +++.|.
T Consensus 281 ~~Pe-------~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk 325 (1042)
T PLN02819 281 AHPE-------HYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTR 325 (1042)
T ss_pred cCch-------hccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhc
Confidence 4431 22 23 4468877 99999983 235679999 888994
No 217
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=67.10 E-value=10 Score=40.82 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=18.3
Q ss_pred eEEEeCcchhhHHHHHHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~ 344 (584)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999866
No 218
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=66.82 E-value=13 Score=41.88 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=64.0
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.+|-|+|.|..|..+|..|... |. +++++|+. .+ ...+....-...... .....++.|+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~--~~~~l~~~~~~~g~~---i~~~~s~~e~ 60 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YE--KTEEFVKKAKEGNTR---VKGYHTLEEL 60 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HH--HHHHHHHhhhhcCCc---ceecCCHHHH
Confidence 4799999999999999998763 43 58888873 11 111111100000000 0124679999
Q ss_pred hccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 007939 404 VRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (584)
Q Consensus 404 V~~v-kptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt 447 (584)
++.. +|+++| +.-.++...+++++.+.....+..||.=+||=.
T Consensus 61 v~~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 61 VNSLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred HhcCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 9865 588555 333467777888887755456778999999854
No 219
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=66.56 E-value=24 Score=37.43 Aligned_cols=127 Identities=20% Similarity=0.308 Sum_probs=76.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
.||.|+|||..|..+|-.|+. .|+- ..|.|+|.+-=..++- -+|.+.. +|.... .. ....+.++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~~-----~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~-~v---~~~~dy~~ 68 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGLA-----DELVLVDVVEDKLKGEAMDLQHGS-AFLKNP-KI---EADKDYSV 68 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHHHHHhh-ccCCCC-EE---EECCCHHH
Confidence 599999999999888887654 3553 5799999742111111 1333322 332211 11 11245554
Q ss_pred HhcccCCcEEEeecCC---CCCCCH------------HHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc--CCcE
Q 007939 403 VVRKVKPHVLLGLSGV---GGVFNE------------EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENI 465 (584)
Q Consensus 403 vV~~vkptvLIG~S~~---~g~Fte------------evv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT--~Gra 465 (584)
++. .|++|=+.+. +| -|+ ++++.|. +++..-+|+-.|||.. ....-+++++ .-+-
T Consensus 69 -~~~--adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~-~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~ 140 (312)
T cd05293 69 -TAN--SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLV-KYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHR 140 (312)
T ss_pred -hCC--CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHH-HhCCCcEEEEccChHH---HHHHHHHHHhCCCHHH
Confidence 777 8988644433 33 333 5666775 4899999999999995 5666666653 1234
Q ss_pred EEEeCCCC
Q 007939 466 VFASGSPF 473 (584)
Q Consensus 466 i~AsGSPf 473 (584)
+|++|+-.
T Consensus 141 viG~gt~L 148 (312)
T cd05293 141 VIGSGCNL 148 (312)
T ss_pred EEecCchH
Confidence 77776543
No 220
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=66.38 E-value=10 Score=37.53 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=57.9
Q ss_pred eEEEeC-cchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhcccccc--CCcCCcccCCCHH
Q 007939 325 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP--GDFMGLREGASLL 401 (584)
Q Consensus 325 riv~~G-AGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~--~~~~~~~~~~~L~ 401 (584)
||.|+| +|..|..+|..+.+. | .+++++|+. .+ .+......+.... ..........+..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~--~~~~l~~~~~~~~~~~g~~~~~~~~~~~ 63 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LE--KAEEAAAKALEELGHGGSDIKVTGADNA 63 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HH--HHHHHHHHHHhhccccCCCceEEEeChH
Confidence 799997 899999999888653 3 367777763 11 1111111110000 0000000113567
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 007939 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (584)
Q Consensus 402 evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~ 449 (584)
|+++. +|++| ++. +-...+++++.++.... ..+|+.++||.+.
T Consensus 64 ea~~~--aDvVi-lav-p~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 64 EAAKR--ADVVI-LAV-PWDHVLKTLESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred HHHhc--CCEEE-EEC-CHHHHHHHHHHHHHhcc-CCEEEEeccCcee
Confidence 88876 78766 443 33344778887753223 3799999999763
No 221
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=66.13 E-value=24 Score=37.02 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=25.6
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.||.|+|+|+.|.++|..+... |. ++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G~-------~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----GV-------PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 4899999999999999988764 32 47777773
No 222
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=66.02 E-value=1e+02 Score=31.15 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=50.2
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV 404 (584)
||.|+|+|..|..+++-|... |.. .+.+++.|+. .+... .++.....+ ....+..|++
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~------~~~~~----~l~~~~~~~---~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN------AQIAA----RLAERFPKV---RIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC------HHHHH----HHHHHcCCc---eEeCCHHHHH
Confidence 689999999999998887653 432 1346666652 01111 222211000 1124566666
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
+. .|++| ++..+..+ +++++... ..+..+|+..+-+++
T Consensus 60 ~~--aDvVi-lav~p~~~-~~vl~~l~--~~~~~~vis~~ag~~ 97 (258)
T PRK06476 60 DR--SDVVF-LAVRPQIA-EEVLRALR--FRPGQTVISVIAATD 97 (258)
T ss_pred Hh--CCEEE-EEeCHHHH-HHHHHHhc--cCCCCEEEEECCCCC
Confidence 65 56544 33223333 56665542 234556776665554
No 223
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.98 E-value=18 Score=37.85 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=24.7
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
||.|+|||+.|..+|..+.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999988764 3 357777764
No 224
>PRK05442 malate dehydrogenase; Provisional
Probab=65.65 E-value=40 Score=36.15 Aligned_cols=121 Identities=21% Similarity=0.204 Sum_probs=71.5
Q ss_pred ceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc--ccC-CCCCChhhhccccccCCcCCcccCCC
Q 007939 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi--~~~-r~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
-||.|+|| |..|..+|-.|+....- +. .+. ..|.|+|.+.-. .++ .-+|.+...++-+.. . -..+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~--~~--~~~-~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~-----i~~~ 73 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDML--GK--DQP-VILQLLEIPPALKALEGVVMELDDCAFPLLAGV-V-----ITDD 73 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhc--CC--CCc-cEEEEEecCCcccccceeehhhhhhhhhhcCCc-E-----EecC
Confidence 58999998 99999988877654330 10 001 279999985321 111 124444433443221 1 1235
Q ss_pred HHHHhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCC-CCCeEEecCCCCCccCCCHHHHhccc
Q 007939 400 LLEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHA 461 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~~---~g~-----------Fteevv~~M~~~~~-erPIIFaLSNPt~~aE~tpeda~~wT 461 (584)
..|.+++ .|++|=+.+. +|- .=+++++.+.+ ++ ...||+-.|||- .+..--+++++
T Consensus 74 ~y~~~~d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~-~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 74 PNVAFKD--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNE-VAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 6677888 8887744443 341 12345556643 45 699999999998 46666777765
No 225
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=65.44 E-value=5.2 Score=40.38 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=25.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi 370 (584)
-+|+|+|||.||+-.|-.|... |. ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 5799999999999998887664 54 48888886443
No 226
>PRK06932 glycerate dehydrogenase; Provisional
Probab=65.29 E-value=43 Score=35.54 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=81.4
Q ss_pred CCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCC
Q 007939 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (584)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~ 398 (584)
.+|.++++.|+|-|..|--+|+++... |+ +++.+|+..- . .. .. ...
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~f-----g~-------~V~~~~~~~~--------~----~~-~~--------~~~ 189 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQAL-----GM-------KVLYAEHKGA--------S----VC-RE--------GYT 189 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCcc--------c----cc-cc--------ccC
Confidence 356669999999999999999988654 33 4666665310 0 00 00 124
Q ss_pred CHHHHhcccCCcEEEee----cCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeCCCCC
Q 007939 399 SLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFE 474 (584)
Q Consensus 399 ~L~evV~~vkptvLIG~----S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsGSPf~ 474 (584)
+|.|+++. .|+++=. ....|.|+++.+..|. +..++.=.|.=.---|.--.+|++ +|+.--|.--=|.
T Consensus 190 ~l~ell~~--sDiv~l~~Plt~~T~~li~~~~l~~mk----~ga~lIN~aRG~~Vde~AL~~aL~--~g~i~gAaLDV~~ 261 (314)
T PRK06932 190 PFEEVLKQ--ADIVTLHCPLTETTQNLINAETLALMK----PTAFLINTGRGPLVDEQALLDALE--NGKIAGAALDVLV 261 (314)
T ss_pred CHHHHHHh--CCEEEEcCCCChHHhcccCHHHHHhCC----CCeEEEECCCccccCHHHHHHHHH--cCCccEEEEecCC
Confidence 69999988 8988732 2224899999999994 566777666533322222233444 6666544332221
Q ss_pred ccccCCCeeee--ccCccccccchhhHH
Q 007939 475 NVDLGNGKIGH--VNQANNMYLFPGIGL 500 (584)
Q Consensus 475 pv~~~~G~~~~--p~Q~NN~~iFPGigl 500 (584)
+-..+...-+. --+..|+++-|=+|-
T Consensus 262 ~EP~~~~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 262 KEPPEKDNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCCCCCChhhHhhcCCCCEEECCcccc
Confidence 11110001000 013568888887763
No 227
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=64.71 E-value=5.7 Score=39.66 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=25.1
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+++|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999987654 353 58999975
No 228
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=64.46 E-value=33 Score=36.46 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=80.1
Q ss_pred CCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCC
Q 007939 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
+|.++++.|+|.|..|..+|+.+..+ |+ +++.+|+.. +..+... .+. ...+
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~~---~~~~~~~----~~~----------~~~~ 183 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRSR---KSWPGVQ----SFA----------GREE 183 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCC---CCCCCce----eec----------cccc
Confidence 44559999999999999999999875 33 577788631 1001110 110 1246
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHh--cccCCcEEEEeCCCC
Q 007939 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF--KHAGENIVFASGSPF 473 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~----~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~--~wT~Grai~AsGSPf 473 (584)
|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|. .++--|+|+ ....|+.--|.--=|
T Consensus 184 l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aR----G~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 184 LSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP----DGAYLLNLAR----GVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred HHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC----CCcEEEECCC----ccccCHHHHHHHHhcCCeeeEEecCC
Confidence 8999988 888773211 12678888888883 3556665553 444444443 233666554432223
Q ss_pred CccccCCCeeeeccCccccccchhhH
Q 007939 474 ENVDLGNGKIGHVNQANNMYLFPGIG 499 (584)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGig 499 (584)
.+-..+... .-=+..|+++-|=+|
T Consensus 254 ~~EPl~~~~--pl~~~~nvi~TPHia 277 (312)
T PRK15469 254 SREPLPPES--PLWQHPRVAITPHVA 277 (312)
T ss_pred CCCCCCCCC--hhhcCCCeEECCcCC
Confidence 322111011 112346888888776
No 229
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=64.40 E-value=6.2 Score=40.39 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=27.7
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999988775 54 689999997
No 230
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=64.28 E-value=7.3 Score=41.73 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=27.3
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi 370 (584)
|+|+|||.||..+|..+.++ +.| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999998544 234 468999987544
No 231
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=64.14 E-value=63 Score=34.30 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=61.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.+++|+|+|..|..++..+... .++ ++++++++. ..+ .......+.+.. ..+ .....++.++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~--a~~~a~~~~~~~-g~~-v~~~~~~~~a 191 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK--AEALALQLSSLL-GID-VTAATDPRAA 191 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH--HHHHHHHHHhhc-Cce-EEEeCCHHHH
Confidence 6899999999988888777542 243 578888773 111 111111121110 000 0123679999
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHH
Q 007939 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADA 457 (584)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Fteevv~~M~~~~~erPIIFaLSNPt~-~aE~tpeda 457 (584)
++. .|++|-+++. .-.|+.++++.- -.|.++.--++ +.|+.++-.
T Consensus 192 v~~--aDiVvtaT~s~~p~i~~~~l~~g-------~~i~~vg~~~p~~rEld~~~l 238 (326)
T TIGR02992 192 MSG--ADIIVTTTPSETPILHAEWLEPG-------QHVTAMGSDAEHKNEIDPAVI 238 (326)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcCCC-------cEEEeeCCCCCCceecCHHHH
Confidence 986 9999977543 245777766542 24445543332 458887763
No 232
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=64.01 E-value=19 Score=38.51 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=92.0
Q ss_pred ccCccccCc---chhHHHHHHHHHHHHHHh---------CC---------CCCCCCCceEEEeCcchhhHHHHHHHH-HH
Q 007939 288 RFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL---------SLTDFADQKIVVVGAGSAGLGVLKMAV-QA 345 (584)
Q Consensus 288 ~~~~FNDDi---QGTaaV~LAgll~Alr~~---------g~---------~l~dl~~~riv~~GAGsAg~GiA~li~-~~ 345 (584)
.+++.|--- ..+|=-+++.+|+.+|.. |. .-.+|.++++.|+|.|..|..+|+.+. ..
T Consensus 89 gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~f 168 (323)
T PRK15409 89 KILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGF 168 (323)
T ss_pred CCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcC
Confidence 355555221 345666777777777742 10 012455699999999999999999875 33
Q ss_pred HHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEee----cCCCCC
Q 007939 346 AARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL----SGVGGV 421 (584)
Q Consensus 346 ~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~----S~~~g~ 421 (584)
|+ ++..+|+.. + .+....+ . ....+|.|+++. .|+++=. ....+.
T Consensus 169 -----gm-------~V~~~~~~~---~-----~~~~~~~--~-------~~~~~l~ell~~--sDvv~lh~plt~~T~~l 217 (323)
T PRK15409 169 -----NM-------PILYNARRH---H-----KEAEERF--N-------ARYCDLDTLLQE--SDFVCIILPLTDETHHL 217 (323)
T ss_pred -----CC-------EEEEECCCC---c-----hhhHHhc--C-------cEecCHHHHHHh--CCEEEEeCCCChHHhhc
Confidence 33 466666531 0 0000011 0 012479999987 8887621 111388
Q ss_pred CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHh--cccCCcEEEEeCCCCCccccCCCeeeeccCccccccchhhH
Q 007939 422 FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF--KHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499 (584)
Q Consensus 422 Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~--~wT~Grai~AsGSPf~pv~~~~G~~~~p~Q~NN~~iFPGig 499 (584)
|+++.+..|. +.-++.=.|. .++--|+|+ ...+|+.-.|.=-=|++-..+... .-=...|+.+-|=+|
T Consensus 218 i~~~~l~~mk----~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~--pL~~~~nvilTPHia 287 (323)
T PRK15409 218 FGAEQFAKMK----SSAIFINAGR----GPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDS--PLLSLPNVVAVPHIG 287 (323)
T ss_pred cCHHHHhcCC----CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCc--hhhcCCCEEEcCcCC
Confidence 9999999993 4556665554 333333332 123566554422112111110000 011245788888776
Q ss_pred H
Q 007939 500 L 500 (584)
Q Consensus 500 l 500 (584)
-
T Consensus 288 ~ 288 (323)
T PRK15409 288 S 288 (323)
T ss_pred C
Confidence 3
No 233
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=63.88 E-value=35 Score=37.08 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHHHhCC----------------C-CCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCc
Q 007939 298 GTAGVALAGLLGTVRAQGL----------------S-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (584)
Q Consensus 298 GTaaV~LAgll~Alr~~g~----------------~-l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~ 360 (584)
-||-++++-+|.++|.... + -.++..+||.|+|.|+.|.-||+.|..+.. .
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~------------~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGC------------V 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccc------------e
Confidence 5777788888888875321 1 134445999999999999999999988421 3
Q ss_pred EEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCC
Q 007939 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSV 436 (584)
Q Consensus 361 i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~----~~g~Fteevv~~M~~~~~e 436 (584)
|....+.. ......+..+++. -++.|...+ .|+|+=..- ..++|+++.+..|. +
T Consensus 188 i~y~~r~~------~~~~~~~~~~~~~----------~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk----~ 245 (336)
T KOG0069|consen 188 ILYHSRTQ------LPPEEAYEYYAEF----------VDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK----D 245 (336)
T ss_pred eeeecccC------CchhhHHHhcccc----------cCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC----C
Confidence 43222211 1122333344442 357777766 888874321 13789999999994 3
Q ss_pred CCeEEecCCC
Q 007939 437 KPAIFAMSNP 446 (584)
Q Consensus 437 rPIIFaLSNP 446 (584)
.=+|.-.+.=
T Consensus 246 g~vlVN~aRG 255 (336)
T KOG0069|consen 246 GAVLVNTARG 255 (336)
T ss_pred CeEEEecccc
Confidence 4455544443
No 234
>PRK06153 hypothetical protein; Provisional
Probab=63.61 E-value=4.8 Score=44.37 Aligned_cols=105 Identities=12% Similarity=0.209 Sum_probs=62.1
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCc-
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL- 394 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~- 394 (584)
.+|++ .||+|+|+|..|--|+++|+.. |+ ++|.++|.+=+ .. .+|..+--.|-.++ + +.
T Consensus 172 ~kL~~---~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D~V-e~--SNLnRQ~gaf~~~D--v-Gk~ 231 (393)
T PRK06153 172 AKLEG---QRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGDDF-LQ--HNAFRSPGAASIEE--L-REA 231 (393)
T ss_pred HHHhh---CcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCCEe-cc--cccccccccCCHhH--c-CCc
Confidence 46677 9999999999999999988876 44 68999999722 21 23433210111111 0 00
Q ss_pred -ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE-ecCCCCC
Q 007939 395 -REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF-AMSNPTM 448 (584)
Q Consensus 395 -~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF-aLSNPt~ 448 (584)
..-.-+.+.++...|.+ ...+..++++-+..+. +..+|| ++=|...
T Consensus 232 ~~KVevaa~rl~~in~~I----~~~~~~I~~~n~~~L~----~~DiV~dcvDn~~a 279 (393)
T PRK06153 232 PKKVDYFKSRYSNMRRGI----VPHPEYIDEDNVDELD----GFTFVFVCVDKGSS 279 (393)
T ss_pred chHHHHHHHHHHHhCCeE----EEEeecCCHHHHHHhc----CCCEEEEcCCCHHH
Confidence 01123666666666654 3345667888877662 455666 3334333
No 235
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=63.54 E-value=39 Score=37.32 Aligned_cols=88 Identities=11% Similarity=0.136 Sum_probs=47.1
Q ss_pred HHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhcccccc
Q 007939 310 TVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDP 388 (584)
Q Consensus 310 Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~ 388 (584)
++.-....|.. .|+.++|-..-.+++++.|.+ .|+.. .. +++... +...+..+.+.+..
T Consensus 293 ~~~~~~~~l~g---krv~i~g~~~~~~~la~~L~e-----lGm~v------~~------~~~~~~~~~~~~~~~~~l~~~ 352 (435)
T cd01974 293 AMTDSHQYLHG---KKFALYGDPDFLIGLTSFLLE-----LGMEP------VH------VLTGNGGKRFEKEMQALLDAS 352 (435)
T ss_pred HHHHHHHhcCC---CEEEEEcChHHHHHHHHHHHH-----CCCEE------EE------EEeCCCCHHHHHHHHHHHhhc
Confidence 33333345556 999999988888899888875 36532 11 111111 11111111111110
Q ss_pred C---C--cCCcccCCCHHHHhcccCCcEEEeecC
Q 007939 389 G---D--FMGLREGASLLEVVRKVKPHVLLGLSG 417 (584)
Q Consensus 389 ~---~--~~~~~~~~~L~evV~~vkptvLIG~S~ 417 (584)
. . +-...+...+++.++..+||++||-|.
T Consensus 353 ~~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 353 PYGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTY 386 (435)
T ss_pred CCCCCcEEEECCCHHHHHHHHhhcCCCEEEECcc
Confidence 0 0 000023345788889999999999874
No 236
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=63.45 E-value=11 Score=42.90 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=24.7
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..+++ .+++|+|||.+|..|+..+.+ .|. +++++|+.
T Consensus 375 ~~~~~---k~vlIlGaGGagrAia~~L~~-----~G~-------~V~i~nR~ 411 (529)
T PLN02520 375 SPLAG---KLFVVIGAGGAGKALAYGAKE-----KGA-------RVVIANRT 411 (529)
T ss_pred cCCCC---CEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 34556 899999998665555544443 452 68888873
No 237
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=63.33 E-value=41 Score=35.73 Aligned_cols=126 Identities=19% Similarity=0.303 Sum_probs=74.0
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccc-cCCcCCcccCCCHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKD-PGDFMGLREGASLLE 402 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~-~~~~~~~~~~~~L~e 402 (584)
||.|+|||..|.-+|-.|+. .|+- +.+.|+|.+-=..++. -+|.+.. .|... .-.. ...+ .+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i----~~~~-y~ 64 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGLF-----SEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKI----RAGD-YD 64 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEE----EECC-HH
Confidence 68999999999999887765 2443 5799999731111111 1343322 22211 0000 1123 46
Q ss_pred HhcccCCcEEEeecCC---CCCCC--------------HHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--C
Q 007939 403 VVRKVKPHVLLGLSGV---GGVFN--------------EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--E 463 (584)
Q Consensus 403 vV~~vkptvLIG~S~~---~g~Ft--------------eevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~--G 463 (584)
.++. .|++|=+.+. ||- | +++++.+.+ ++...|++-.|||.. +...-+++++. =
T Consensus 65 ~~~~--aDivvitaG~~~kpg~-tr~R~dll~~N~~I~~~i~~~i~~-~~p~~i~ivvsNPvD---v~t~~~~k~sg~p~ 137 (307)
T cd05290 65 DCAD--ADIIVITAGPSIDPGN-TDDRLDLAQTNAKIIREIMGNITK-VTKEAVIILITNPLD---IAVYIAATEFDYPA 137 (307)
T ss_pred HhCC--CCEEEECCCCCCCCCC-CchHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecCcHH---HHHHHHHHHhCcCh
Confidence 6777 8887755544 342 3 466777754 889999999999983 55556666541 2
Q ss_pred cEEEEeCCCC
Q 007939 464 NIVFASGSPF 473 (584)
Q Consensus 464 rai~AsGSPf 473 (584)
+-+|.||.=.
T Consensus 138 ~rviG~gt~L 147 (307)
T cd05290 138 NKVIGTGTML 147 (307)
T ss_pred hheecccchH
Confidence 3356666443
No 238
>PLN02688 pyrroline-5-carboxylate reductase
Probab=62.88 E-value=29 Score=34.99 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=53.2
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCC-ChhhhcCcEEEE-ecCcccccCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGN-NDAFARNKFFLL-DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gl-s~eeA~~~i~lv-Ds~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
||.|+|.|..|..+|+.|+.. |. . ..+|+++ |+. . +..+.+.+.. .....+..|
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~~----~~~i~v~~~r~----~------~~~~~~~~~g-----~~~~~~~~e 57 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVVP----PSRISTADDSN----P------ARRDVFQSLG-----VKTAASNTE 57 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCCC----cceEEEEeCCC----H------HHHHHHHHcC-----CEEeCChHH
Confidence 689999999999999988653 32 1 1367777 542 1 1111222111 012245777
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
++++ .|++| ++. +....+++++.+.....+..+|..+++.++
T Consensus 58 ~~~~--aDvVi-l~v-~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 58 VVKS--SDVII-LAV-KPQVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred HHhc--CCEEE-EEE-CcHHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 7765 66655 332 233457777766432334456666655543
No 239
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=62.60 E-value=39 Score=36.08 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=70.7
Q ss_pred ceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc--ccCC-CCCChhhhccccccCCcCCcccCCC
Q 007939 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi--~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
.||.|+|| |..|..+|-.|+.. |+-.-.=...+.|+|.+.-. .++. -+|.+...+|.+.. . -..+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~-~-----i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-----EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEI-V-----ITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccCCCCceEEEEEecCCcccccceeehhhhhccccccCce-E-----EecC
Confidence 58999999 99999888766542 33100001279999985322 1111 13444333333211 1 1234
Q ss_pred HHHHhcccCCcEEEeecCC---CCCCC------------HHHHHHhhhcCC-CCCeEEecCCCCCccCCCHHHHhccc
Q 007939 400 LLEVVRKVKPHVLLGLSGV---GGVFN------------EEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHA 461 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~~---~g~Ft------------eevv~~M~~~~~-erPIIFaLSNPt~~aE~tpeda~~wT 461 (584)
..+.+++ .|++|=+.+. +| .| +++...+. +++ +.-||+-.|||- .+..--+++++
T Consensus 72 ~~~~~~d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~-~~~~~~~iiivvsNPv---D~~t~~~~k~s 142 (322)
T cd01338 72 PNVAFKD--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALN-DVASRDVKVLVVGNPC---NTNALIAMKNA 142 (322)
T ss_pred cHHHhCC--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHH-hhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 5677887 8998845444 33 23 34556664 377 488999999998 36666666655
No 240
>PRK00536 speE spermidine synthase; Provisional
Probab=62.55 E-value=11 Score=39.27 Aligned_cols=85 Identities=8% Similarity=0.048 Sum_probs=51.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccccc-CCCCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~-~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
.||+|+|+|-. |+++-++.. + +++.|||-++-|++ .++.++..+..|..+.-.+ ...+.+
T Consensus 74 k~VLIiGGGDG--g~~REvLkh-------~-----~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l-----~~~~~~ 134 (262)
T PRK00536 74 KEVLIVDGFDL--ELAHQLFKY-------D-----THVDFVQADEKILDSFISFFPHFHEVKNNKNFTH-----AKQLLD 134 (262)
T ss_pred CeEEEEcCCch--HHHHHHHCc-------C-----CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEE-----eehhhh
Confidence 69999999998 455555543 1 38999999998776 4556776655453322111 111222
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhh
Q 007939 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRE 432 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~g~Fteevv~~M~~ 432 (584)
.- .-+-||+|-=|+ |+++-.+.+.+
T Consensus 135 ~~-~~~fDVIIvDs~----~~~~fy~~~~~ 159 (262)
T PRK00536 135 LD-IKKYDLIICLQE----PDIHKIDGLKR 159 (262)
T ss_pred cc-CCcCCEEEEcCC----CChHHHHHHHH
Confidence 11 135899986654 77776666543
No 241
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=62.46 E-value=16 Score=38.12 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=54.6
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
.||.|+|+|+-|..+|-.+.++ | .++.++++... ..-+ ..+.-. .. .....+.......+. +
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~-~~--~~~~~~~~~~~~~~~-~ 68 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVD-SV--HGDFHLPPVQAYRSA-E 68 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEE-eC--CCCeeecCceEEcch-h
Confidence 7999999999999999887664 3 24566665421 1100 111000 00 000000000001122 2
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
.+. .+|++| ++. +..-++++++.+.....+..+|..|-|=-.
T Consensus 69 ~~~--~~D~vi-lav-K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 69 DMP--PCDWVL-VGL-KTTANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred hcC--CCCEEE-EEe-cCCChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 233 367776 553 344568888888654556778888988665
No 242
>PRK06141 ornithine cyclodeaminase; Validated
Probab=62.30 E-value=60 Score=34.30 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=61.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.+++|+|+|..|..++..+... .+. ++|+++|+. .+ ........+.+.... .....++.++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~--~a~~~a~~~~~~g~~---~~~~~~~~~a 186 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PA--KAEALAAELRAQGFD---AEVVTDLEAA 186 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH--HHHHHHHHHHhcCCc---eEEeCCHHHH
Confidence 7999999999998888766552 232 578888773 11 122222222111100 0123678999
Q ss_pred hcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCeEEec-CCCCCccCCCHHH
Q 007939 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAM-SNPTMNAECTAAD 456 (584)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Fteevv~~M~~~~~erPIIFaL-SNPt~~aE~tped 456 (584)
++. .|++|-+++.+ -.|+.++++. . . .|-+. |++..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~~----g--~-~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLKP----G--T-HLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcCC----C--C-EEEeeCCCCcccccCCHHH
Confidence 977 99998766543 2366655542 1 2 44444 4455667888754
No 243
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=62.29 E-value=35 Score=37.24 Aligned_cols=194 Identities=10% Similarity=0.147 Sum_probs=96.5
Q ss_pred ccccccCChhhHHHHHhcCCCCCceEE-EEecCceeeccCCCCCCcccccchh-hhhhh-----hhcCCCCCCceeEEee
Q 007939 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGK-LDVYV-----AAAGINPQRILPVMLD 221 (584)
Q Consensus 149 Glyis~~D~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGK-l~LY~-----a~gGI~P~~~LPV~LD 221 (584)
|-|....|-..+.++|+.. ++++. +++.++.+=-+-..+...+-|..+. ...+. .==|+. .+.+.
T Consensus 165 g~~~~~~d~~el~~lL~~~---Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~~~fGip---~~~~~-- 236 (410)
T cd01968 165 GEFNVAGELWGVKPLLEKL---GIRVLASITGDSRVDEIRRAHRAKLNVVQCSKSMIYLARKMEEKYGIP---YIEVS-- 236 (410)
T ss_pred CCCCCcccHHHHHHHHHHc---CCeEEEEeCCCCCHHHHHhhhhCcEEEEEchhHHHHHHHHHHHHhCCC---eEecC--
Confidence 3344445666788888875 56766 4667766655556666555554432 22221 111444 22111
Q ss_pred ccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCeeeEeccCCCChHHHHHHHHhhccCccccCcchhHH
Q 007939 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG 301 (584)
Q Consensus 222 vGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaa 301 (584)
++|+ +-.++|++.+.+.+..-.+ ...+-..+++.+.++
T Consensus 237 -------------p~G~-----------~~t~~~l~~ia~~~g~~~~------~~~~~~~i~~e~~~~------------ 274 (410)
T cd01968 237 -------------FYGI-----------RDTSKSLRNIAELLGDEEL------IERTEELIAREEARL------------ 274 (410)
T ss_pred -------------cCcH-----------HHHHHHHHHHHHHhCCchh------HHHHHHHHHHHHHHH------------
Confidence 1222 2257777777776531100 122334455544432
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhh
Q 007939 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA 381 (584)
Q Consensus 302 V~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k 381 (584)
..++......|.. .|++|+|.+.-..++++++.+ .|+. +..+-+. ....++....+
T Consensus 275 ------~~~l~~~~~~l~g---krv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~~~~~~~~ 330 (410)
T cd01968 275 ------RPELAPYRARLEG---KKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTKEDYERIK 330 (410)
T ss_pred ------HHHHHHHHHHhCC---CEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCHHHHHHHH
Confidence 2333333344556 899999988888899886644 5763 3333211 11111111111
Q ss_pred hccccccCCcCCcccCCCHHHHhcccCCcEEEeecC
Q 007939 382 APFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG 417 (584)
Q Consensus 382 ~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~ 417 (584)
..+ .....+-...+...+.+.++..+||++||-|.
T Consensus 331 ~~~-~~~~~v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 331 ELL-GEGTVIVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred HHh-CCCcEEEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 111 11111100012234778889999999999764
No 244
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=61.69 E-value=6.7 Score=41.55 Aligned_cols=32 Identities=38% Similarity=0.604 Sum_probs=28.0
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999998876 44 589999987
No 245
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=61.47 E-value=31 Score=37.80 Aligned_cols=101 Identities=13% Similarity=0.210 Sum_probs=52.7
Q ss_pred CCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCCh-hhh--ccccccCCcCC
Q 007939 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP-AAA--PFAKDPGDFMG 393 (584)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~-~k~--~fA~~~~~~~~ 393 (584)
.+.. .|++|+|...-..|+++.|.+. |+.. ..+.. + +.+ +...+ .+. .......+.-.
T Consensus 296 ~l~g---k~v~i~~~~~~~~~l~~~L~e~-----G~~v----~~v~~-~-----~~~-~~~~~~~~~~~~~~~~~~~~v~ 356 (428)
T cd01965 296 YLGG---KRVAIAGDPDLLLGLSRFLLEM-----GAEP----VAAVT-G-----TDN-PPFEKRMELLASLEGIPAEVVF 356 (428)
T ss_pred HhcC---CEEEEEcChHHHHHHHHHHHHc-----CCcc----eEEEE-c-----CCC-chhHHHHHHhhhhcCCCceEEE
Confidence 3455 9999999998889998888764 4432 11111 1 111 11100 000 00000000000
Q ss_pred cccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 007939 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (584)
Q Consensus 394 ~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt 447 (584)
..+...+++.++..|||++||-|- .+.+-+.+ ..|.| ..|.|.
T Consensus 357 ~~d~~el~~~i~~~~pdliig~~~-----~~~~a~~~-----~ip~i-~~~~P~ 399 (428)
T cd01965 357 VGDLWDLESLAKEEPVDLLIGNSH-----GRYLARDL-----GIPLV-RVGFPI 399 (428)
T ss_pred CCCHHHHHHHhhccCCCEEEECch-----hHHHHHhc-----CCCEE-EecCCc
Confidence 123356888899999999999773 23443333 46764 456665
No 246
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=61.05 E-value=83 Score=33.75 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=71.6
Q ss_pred ceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc--ccCC-CCCChhhhccccccCCcCCcccCCC
Q 007939 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi--~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
-||.|+|| |..|..+|-.|+.. |+-.-+=...|.|+|.+.-. .++. -+|.+..-++.+.. .-..+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~------~i~~~ 72 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG-----ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGV------VATTD 72 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC-----CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCc------EEecC
Confidence 48999998 99999998877652 43200001269999985311 1111 13433332222211 11235
Q ss_pred HHHHhcccCCcEEEeecCC---CCCCC------------HHHHHHhhhcCCC-CCeEEecCCCCCccCCCHHHHhccc
Q 007939 400 LLEVVRKVKPHVLLGLSGV---GGVFN------------EEVLKAMRESDSV-KPAIFAMSNPTMNAECTAADAFKHA 461 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~~---~g~Ft------------eevv~~M~~~~~e-rPIIFaLSNPt~~aE~tpeda~~wT 461 (584)
..+.+++ .|++|=+.+. +| .| +++++.+++ ++. .-||+--|||- ....--+++++
T Consensus 73 ~~~~~~d--aDvVVitAG~~~k~g-~tR~dll~~Na~i~~~i~~~i~~-~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 73 PEEAFKD--VDAALLVGAFPRKPG-MERADLLSKNGKIFKEQGKALNK-VAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 6677887 8988845444 33 22 356666754 776 88999999998 46666777766
No 247
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=60.35 E-value=24 Score=39.72 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=60.8
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhc
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVR 405 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~ 405 (584)
|-|+|.|..|..+|..|... |. +++++|+.- . .....++.+... . +.....++.|+++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt~----~--~~~~l~~~~~~g-~---~~~~~~s~~e~v~ 59 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRTP----E--KTDEFLAEHAKG-K---KIVGAYSIEEFVQ 59 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCCH----H--HHHHHHhhccCC-C---CceecCCHHHHHh
Confidence 77999999999999998664 43 578777631 1 122211111100 0 0012356888886
Q ss_pred cc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007939 406 KV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (584)
Q Consensus 406 ~v-kptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN 445 (584)
.. +|+++| ++-.++...++++..+.....+.-||.=.||
T Consensus 60 ~l~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 60 SLERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred hcCCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 54 588666 3434677778888887554467789999998
No 248
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.66 E-value=44 Score=36.91 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=26.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.||+|+|.|-.|+++|++|... |. .+..+|.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~-----G~-------~V~~~D~~ 46 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL-----GA-------KVTAFDKK 46 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-----CC-------EEEEECCC
Confidence 7999999999999999887763 43 57788864
No 249
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=59.42 E-value=45 Score=34.44 Aligned_cols=100 Identities=10% Similarity=0.087 Sum_probs=51.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcC-CChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~G-ls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
+||.|+|+|..|..+|..+... | ++ ..+++++|++-- +.+......+. . .....+..|
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~~-----~~~~~l~~~~~----~---~~~~~~~~e 60 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSKN-----EHFNQLYDKYP----T---VELADNEAE 60 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCcH-----HHHHHHHHHcC----C---eEEeCCHHH
Confidence 4799999999999999887653 3 22 146787776310 00111111110 0 001234566
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 007939 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~ 448 (584)
+++. +|++| ++.. ....+++++.++....+..+|..++|-.+
T Consensus 61 ~~~~--aDvVi-lavp-p~~~~~vl~~l~~~l~~~~~ivS~~aGi~ 102 (277)
T PRK06928 61 IFTK--CDHSF-ICVP-PLAVLPLLKDCAPVLTPDRHVVSIAAGVS 102 (277)
T ss_pred HHhh--CCEEE-EecC-HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 6654 66666 4432 23345666655322223445555666543
No 250
>PRK06475 salicylate hydroxylase; Provisional
Probab=58.65 E-value=8.3 Score=41.21 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.8
Q ss_pred CceEEEeCcchhhHHHHHHHHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~ 344 (584)
.+||+|+|||.||+..|-.|..
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHh
Confidence 4899999999999998877644
No 251
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=58.61 E-value=15 Score=39.12 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=29.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~ 375 (584)
.+|||+|+|.||+..|+.|... +- .-+|.++++..-..-+|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~~-----~~~Itvi~~~~~~~y~~~ 44 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----DA-----HIPITLITADSGDEYNKP 44 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----Cc-----CCCEEEEeCCCCCCcCcC
Confidence 5899999999999999988552 11 146888887653333343
No 252
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=57.68 E-value=10 Score=37.80 Aligned_cols=35 Identities=20% Similarity=0.521 Sum_probs=28.1
Q ss_pred CCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
|+++|+||+|+|..|..-++.|+.+ | .+|.+++.+
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 3449999999999999988888875 2 268888874
No 253
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=57.63 E-value=10 Score=40.51 Aligned_cols=32 Identities=41% Similarity=0.639 Sum_probs=28.0
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999875 44 689999987
No 254
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=57.33 E-value=39 Score=35.24 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=52.2
Q ss_pred ceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCC-cCCcccCCCHH
Q 007939 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD-FMGLREGASLL 401 (584)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~-~~~~~~~~~L~ 401 (584)
.+||++.. ++.++|- +..+|+ .-|++ ++++|+.+ ..++++-..+|....+ +++..-..||.
T Consensus 5 i~iVLVep~~~gNIG~---vARaMK-NfGl~------eL~LV~Pr-------~~~~eeA~a~A~gA~dile~A~i~~tL~ 67 (242)
T COG0565 5 IRIVLVEPSHPGNIGS---VARAMK-NFGLS------ELRLVNPR-------AGLDEEARALAAGARDILENAKIVDTLE 67 (242)
T ss_pred cEEEEEcCCCCccHHH---HHHHHH-hCCcc------eEEEECCC-------CCCCHHHHHHhccchhhhccCeeecCHH
Confidence 67777764 5566665 446677 78996 59988875 3355555555554333 22223458999
Q ss_pred HHhcccCCcEEEeecCCCC
Q 007939 402 EVVRKVKPHVLLGLSGVGG 420 (584)
Q Consensus 402 evV~~vkptvLIG~S~~~g 420 (584)
|+|.. .+.+||+|+...
T Consensus 68 eAl~d--~~~v~aTtar~r 84 (242)
T COG0565 68 EALAD--CDLVVATTARSR 84 (242)
T ss_pred HHhcC--CCEEEEeccccC
Confidence 99998 999999996433
No 255
>PRK08291 ectoine utilization protein EutC; Validated
Probab=56.84 E-value=67 Score=34.11 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=58.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
++++|+|+|..|..++..+... .++ +++.++|+. .+ ........+.+... .. .....++.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~--~a~~l~~~~~~~~g-~~-v~~~~d~~~a 194 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AA--KAEAYAADLRAELG-IP-VTVARDVHEA 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH--HHHHHHHHHhhccC-ce-EEEeCCHHHH
Confidence 6999999999987776655432 233 478888763 11 12222222211100 00 0123678999
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEec-CCCCCccCCCHHH
Q 007939 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAM-SNPTMNAECTAAD 456 (584)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Fteevv~~M~~~~~erPIIFaL-SNPt~~aE~tped 456 (584)
++. .|++|-++.. .-.|+.++++.- . -|.++ |+-..+.|+.|+-
T Consensus 195 l~~--aDiVi~aT~s~~p~i~~~~l~~g------~-~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 195 VAG--ADIIVTTTPSEEPILKAEWLHPG------L-HVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred Hcc--CCEEEEeeCCCCcEecHHHcCCC------c-eEEeeCCCCCCcccCCHHH
Confidence 986 8999866543 345666666532 1 23333 3322334888876
No 256
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=56.80 E-value=7.1 Score=40.68 Aligned_cols=32 Identities=31% Similarity=0.700 Sum_probs=26.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..+-|+|||-.|-|||+....+ |+ ++|++|+.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4578999999999999987764 65 69999985
No 257
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=56.71 E-value=2e+02 Score=30.04 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=21.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
++++++|+|..|+..+.++...+ |- .+++.+|+
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~ 197 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGK 197 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeC
Confidence 69999999877665555544321 21 36887776
No 258
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=56.61 E-value=8.5 Score=39.02 Aligned_cols=91 Identities=27% Similarity=0.325 Sum_probs=52.8
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (584)
++|++ -|++++|+|.-|.-++..++.+.+ ++++++|.+ +-+ ++.-|+.|-+...+. +.+
T Consensus 26 ~~l~~---s~vlvvG~GglG~~~~~~la~aGv-----------g~l~i~D~d---~v~---~snL~rq~~~~~~di-g~~ 84 (254)
T COG0476 26 QKLKD---SRVLVVGAGGLGSPAAKYLALAGV-----------GKLTIVDFD---TVE---LSNLQRQFLFTEADV-GKP 84 (254)
T ss_pred HHHhh---CCEEEEecChhHHHHHHHHHHcCC-----------CeEEEEcCC---ccc---ccccCceeeeccccc-CCc
Confidence 45666 899999999999999998888644 569999986 222 333333333322221 111
Q ss_pred cCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 007939 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (584)
Q Consensus 396 ~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~ 429 (584)
......+.++.++|.+-+=.-. ..++++.+..
T Consensus 85 Ka~~a~~~l~~ln~~v~v~~~~--~~l~~~~~~~ 116 (254)
T COG0476 85 KAEVAAKALRKLNPLVEVVAYL--ERLDEENAEE 116 (254)
T ss_pred HHHHHHHHHHHhCCCCeEEEee--cccChhhHHH
Confidence 1122345677777777553322 2255555533
No 259
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=56.58 E-value=10 Score=40.55 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
.+|+|+|||-+|+.+|..|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999888763 4 3689999864
No 260
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=56.38 E-value=73 Score=33.52 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=25.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcC-CChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~G-ls~eeA~~~i~lvDs~ 367 (584)
.||.|+|+|..|-.|+.-|+.. | +. ..+|++.|+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC
Confidence 6899999999988777766654 4 33 2578877763
No 261
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=56.27 E-value=52 Score=36.95 Aligned_cols=143 Identities=9% Similarity=0.148 Sum_probs=74.0
Q ss_pred ccccCChhhHHHHHhcCCCCCceEE-EEecCceeeccCCCCCCcccccc-hhhhhhhh-----hcCCCCCCceeEEeecc
Q 007939 151 YFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPI-GKLDVYVA-----AAGINPQRILPVMLDVG 223 (584)
Q Consensus 151 yis~~D~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~i-GKl~LY~a-----~gGI~P~~~LPV~LDvG 223 (584)
|....|...+.++|+.. +++++ +++.++.+=-|=..+...+-|.+ +....+.+ ==||. .++..
T Consensus 200 ~~~~gd~~elk~lL~~~---Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~A~~L~erfGiP---~~~~~---- 269 (475)
T PRK14478 200 YNLAGELWQVKPLLDRL---GIRVVACITGDARYDDVASAHRARANMMVCSGAMINLARKMEERYGIP---FFEGS---- 269 (475)
T ss_pred CCCCCCHHHHHHHHHHc---CCeEEEEcCCCCCHHHHHhcccCcEEEEEcHHHHHHHHHHHHHHhCCC---EEecC----
Confidence 33345666777888765 56666 45656555555555555555544 22222321 01444 22211
Q ss_pred CCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCeeeEeccCCCChHHHHHHHHhhccCccccCcchhHHHH
Q 007939 224 TNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVA 303 (584)
Q Consensus 224 TnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~ 303 (584)
++|+ +-.++|+..+.+.+-.-.+. |+. ...+-+++++.+.+
T Consensus 270 -----------p~G~-----------~~T~~~l~~la~~~~~~~~~-~~~-~~~~e~~i~~e~~~--------------- 310 (475)
T PRK14478 270 -----------FYGI-----------EDTSDSLRQIARLLVERGAD-AEL-VERTEALIAEEEAK--------------- 310 (475)
T ss_pred -----------CCcH-----------HHHHHHHHHHHHHHhhcCCC-hHH-HHHHHHHHHHHHHH---------------
Confidence 1221 22577777777766110010 000 12334445554444
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCC
Q 007939 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNN 353 (584)
Q Consensus 304 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls 353 (584)
+..++......|.. .|++|+|.+.-..++++.+.+ .|+.
T Consensus 311 ---~~~~l~~~~~~l~G---k~vaI~~~~~~~~~la~~l~E-----lGm~ 349 (475)
T PRK14478 311 ---AWAALEPYRPRLEG---KRVLLYTGGVKSWSVVKALQE-----LGME 349 (475)
T ss_pred ---HHHHHHHHHHHhCC---CEEEEEcCCchHHHHHHHHHH-----CCCE
Confidence 34444444455566 899999888888888887644 4664
No 262
>PRK06184 hypothetical protein; Provisional
Probab=56.11 E-value=10 Score=41.98 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=25.8
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+..|+|+|||.+|+..|-+|.. .|+ ++.++|+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~ 35 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKA 35 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 4789999999999999987765 455 36677765
No 263
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=55.82 E-value=8 Score=41.88 Aligned_cols=111 Identities=23% Similarity=0.351 Sum_probs=67.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
-+++++|.|-+|+--|++.+ |+. .++..+|.+ .+ .|....-.|..+-.-. ......++|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~--rl~~ldd~f~~rv~~~--~st~~~iee~ 228 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----ID--RLRQLDDLFGGRVHTL--YSTPSNIEEA 228 (371)
T ss_pred ccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HH--HHhhhhHhhCceeEEE--EcCHHHHHHH
Confidence 79999999999998877643 443 367777763 12 2333333343321000 0012459999
Q ss_pred hcccCCcEEEee-----cCCCCCCCHHHHHHhhhc------CCCCCeEEecCCCCCccCCCHHH
Q 007939 404 VRKVKPHVLLGL-----SGVGGVFNEEVLKAMRES------DSVKPAIFAMSNPTMNAECTAAD 456 (584)
Q Consensus 404 V~~vkptvLIG~-----S~~~g~Fteevv~~M~~~------~~erPIIFaLSNPt~~aE~tped 456 (584)
|++ .|.+||. +..|.+.|+|+++.|..- -.+.==+|-=|.||+.++-|.+.
T Consensus 229 v~~--aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 229 VKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred hhh--ccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 987 9999887 444677999999999420 01122235556777766666543
No 264
>PRK07877 hypothetical protein; Provisional
Probab=55.65 E-value=18 Score=42.91 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
.+|+. .||+|+|+| .|.-+|..|+.+ |+ -.+|.++|.+=
T Consensus 103 ~~L~~---~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ 141 (722)
T PRK07877 103 ERLGR---LRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDT 141 (722)
T ss_pred HHHhc---CCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCE
Confidence 45666 999999998 788888888765 42 15899999873
No 265
>PRK07236 hypothetical protein; Provisional
Probab=55.65 E-value=11 Score=39.97 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.5
Q ss_pred CCceEEEeCcchhhHHHHHHHHHH
Q 007939 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~ 345 (584)
...+|+|+|||.||+..|..|...
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC
Confidence 348999999999999999888763
No 266
>PRK07340 ornithine cyclodeaminase; Validated
Probab=55.55 E-value=68 Score=33.82 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=61.0
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.+++|+|+|..|...+..++.. .+. ++|+++|+. .+ ..+.|+.............++.|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~------~a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AA------SAAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HH------HHHHHHHHHHhcCCeeEECCHHHH
Confidence 8999999999988887777652 233 478888874 11 112233221100000013578999
Q ss_pred hcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCeEEecCCCC-CccCCCHHHH
Q 007939 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTAADA 457 (584)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Fteevv~~M~~~~~erPIIFaLSNPt-~~aE~tpeda 457 (584)
++. .|++|-++..+ ..|+. +++ +.--|-++.-.+ .+.|+.++-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~-------~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR-------AGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC-------CCCEEEecCCCCCCcccCCHHHH
Confidence 986 99999776543 34543 222 344666666433 3678887643
No 267
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=55.07 E-value=12 Score=35.69 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=26.7
Q ss_pred CCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
|++.++||+|+|..|.-.++.|+++ | .++.+++.+
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 4449999999999998888888774 2 357777643
No 268
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=54.88 E-value=9 Score=41.67 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.4
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..||||+|+|.||+..|+.|.. . .-+|.++|.+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~ 42 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPR 42 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCC
Confidence 3899999999999988765521 1 1358888864
No 269
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=54.83 E-value=31 Score=33.62 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=88.4
Q ss_pred ccCCCccccccCChhhHHHHHhcCCCCCceEEEEecC--ceeeccCCCCCC--cccccchhhhhhhhhcCCCCCCceeEE
Q 007939 144 FRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG--SRILGLGDLGVQ--GIGIPIGKLDVYVAAAGINPQRILPVM 219 (584)
Q Consensus 144 ~r~prGlyis~~D~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--Gm~I~iGKl~LY~a~gGI~P~~~LPV~ 219 (584)
-+++.|+-++..|.....+.++.+-..+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|+
T Consensus 53 ~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v~ 126 (257)
T PF13407_consen 53 SQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKVL 126 (257)
T ss_dssp HTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEEE
T ss_pred HhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceEE
Confidence 4568999999999887778887776678888877555 111222223332 66777777777666655 4455
Q ss_pred eeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCe-eeE---eccCCCChHHHHHHHHhhccCccccC
Q 007939 220 LDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQ---FEDFQMKWAFETLERYRKRFCMFNDD 295 (584)
Q Consensus 220 LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-lIq---fEDf~~~nAf~lL~ryr~~~~~FNDD 295 (584)
+=.|.-+ .....+..+-|.++++. +|++ .+. +.++....+.+..+++-...+ -|=
T Consensus 127 ~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~~ 185 (257)
T PF13407_consen 127 ILSGSPG------------------NPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VDA 185 (257)
T ss_dssp EEESSTT------------------SHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EEE
T ss_pred eccCCCC------------------chHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ceE
Confidence 4444211 12223457777788777 8877 333 347888888876666644332 111
Q ss_pred cchhHHHHHHHHHHHHHHhCC
Q 007939 296 IQGTAGVALAGLLGTVRAQGL 316 (584)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~ 316 (584)
|=.+....+-|++.|++..|+
T Consensus 186 i~~~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 186 IIACNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEESSHHHHHHHHHHHHHTTC
T ss_pred EEeCCChHHHHHHHHHHHcCC
Confidence 111222334478889999888
No 270
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.70 E-value=11 Score=39.19 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
.||.|+|+|..|.|||.+++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 4899999999999999988764
No 271
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=54.65 E-value=6 Score=42.30 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 3799999999999999988775
No 272
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=54.62 E-value=12 Score=41.45 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=27.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
-+++|+|||.+|+++|..|.++ |.+ ++.++|+..
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 6899999999999999888775 443 388888874
No 273
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=54.61 E-value=12 Score=41.54 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=27.9
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+||||+|+|-+|+-.|..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~------~----~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL------P----DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC------C----CCcEEEEeCC
Confidence 489999999999999988887642 0 1368999985
No 274
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=54.46 E-value=10 Score=40.89 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=17.5
Q ss_pred eEEEeCcchhhHHHHHHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~ 344 (584)
+|+|+|||.||...|..+..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~ 21 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS 21 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh
Confidence 68999999999999887764
No 275
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=53.90 E-value=12 Score=35.02 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=28.0
Q ss_pred EEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 327 v~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999999864 1122357999999755
No 276
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=53.86 E-value=53 Score=36.43 Aligned_cols=122 Identities=24% Similarity=0.323 Sum_probs=81.4
Q ss_pred ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccccc
Q 007939 293 NDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (584)
Q Consensus 293 NDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~ 372 (584)
.|.-.||+--++-|++.| |..=+.- ..+|+.|=|--|-|||..+... | .++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~Ra---Tn~liaG---K~vVV~GYG~vGrG~A~~~rg~-----G-------A~ViVtEv------ 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILRA---TNVLLAG---KNVVVAGYGWVGRGIAMRLRGM-----G-------ARVIVTEV------ 240 (420)
T ss_pred cccccccchhHHHHHHhh---hceeecC---ceEEEecccccchHHHHHhhcC-----C-------CeEEEEec------
Confidence 377799999999999865 4555555 8999999999999999876553 2 24553322
Q ss_pred CCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCC
Q 007939 373 ERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAEC 452 (584)
Q Consensus 373 ~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~ 452 (584)
+|.+.-=|.- +| -.--++.||++. .|++|=+++.-++.+.|..+.|. .=.|.+=+=- -.-|+
T Consensus 241 -----DPI~AleA~M----dG-f~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk-----DgaIl~N~GH-Fd~EI 302 (420)
T COG0499 241 -----DPIRALEAAM----DG-FRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK-----DGAILANAGH-FDVEI 302 (420)
T ss_pred -----CchHHHHHhh----cC-cEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc-----CCeEEecccc-cceec
Confidence 2222111110 11 112468999988 89999999999999999999993 3445433221 22366
Q ss_pred CHHH
Q 007939 453 TAAD 456 (584)
Q Consensus 453 tped 456 (584)
..+.
T Consensus 303 ~~~~ 306 (420)
T COG0499 303 DVAG 306 (420)
T ss_pred cHHH
Confidence 6654
No 277
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=53.67 E-value=14 Score=40.37 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=26.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.||||+|+|.||+..|..|... +- .-+|.++|+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 4899999999999999998652 11 1368888875
No 278
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=53.44 E-value=11 Score=40.09 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=23.9
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 48999999999999987764 354 46677765
No 279
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=53.32 E-value=14 Score=36.81 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=26.4
Q ss_pred CCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
|++.++||+|+|..|.-.++.|..+ | .+|++++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 3449999999999998888777764 2 36888865
No 280
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.31 E-value=13 Score=38.42 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=26.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+||.|+|+|..|.+||..+... |. +++++|..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999988653 43 58888864
No 281
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=53.10 E-value=28 Score=35.29 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
+..+.+++..+.. .. .+++|+|+|+.|.-.+.+.. ..|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~~-~g---~~VlV~G~G~vG~~~~~~ak-----~~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGDL-KG---RRVLVVGAGMLGLTAAAAAA-----AAGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccCC-CC---CEEEEECCCHHHHHHHHHHH-----HcCC------CEEEEECC
Confidence 3445566665543 45 79999999876644433322 2354 45887764
No 282
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=52.99 E-value=12 Score=43.23 Aligned_cols=33 Identities=27% Similarity=0.610 Sum_probs=26.7
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..+|+|+|+|.||+..|..|... |. ++.++|+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-----G~-------~V~V~E~~ 359 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-----GV-------AVTVYDRH 359 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 38999999999999999888653 43 47888874
No 283
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=52.77 E-value=82 Score=33.55 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=62.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.++.|+|+|.-|-..++.+.. + .. -++|+++|+. .+ ........+.+...++ ....+..|+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~--~--~~------~~~v~V~~r~----~~--~~~~~~~~~~~~g~~v---~~~~~~~ea 189 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSR--V--FD------LEEVSVYCRT----PS--TREKFALRASDYEVPV---RAATDPREA 189 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHh--c--CC------CCEEEEECCC----HH--HHHHHHHHHHhhCCcE---EEeCCHHHH
Confidence 799999999877655444432 1 11 2678888873 11 1122212221111000 124679999
Q ss_pred hcccCCcEEEeecC-CCCCCCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHH
Q 007939 404 VRKVKPHVLLGLSG-VGGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADA 457 (584)
Q Consensus 404 V~~vkptvLIG~S~-~~g~Fteevv~~M~~~~~erPIIFaLSNPt~-~aE~tpeda 457 (584)
++. .||+|-+.. ....|..++++. ..-|-++.-.++ +.|+.++-.
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~~-------g~~v~~vGs~~p~~~Eld~~~l 236 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVSE-------GTHINAIGADAPGKQELDPEIL 236 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcCC-------CCEEEecCCCCcccccCCHHHH
Confidence 987 899986553 235677777653 446888876655 679998753
No 284
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=52.57 E-value=44 Score=35.37 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=24.1
Q ss_pred CCcEEEeecCCCCCCCHHHHHHhhhcC-CCCCeEEecCCCCC
Q 007939 408 KPHVLLGLSGVGGVFNEEVLKAMRESD-SVKPAIFAMSNPTM 448 (584)
Q Consensus 408 kptvLIG~S~~~g~Fteevv~~M~~~~-~erPIIFaLSNPt~ 448 (584)
+-|++||+|..+. |++++..+.... ..-|+|.=-+||.+
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~s 166 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPDS 166 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5699999998554 588888873322 22355443345554
No 285
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=52.53 E-value=25 Score=36.70 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 307 ll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
.+.|++..+.. .. ++++|.|+|+.|...+.+... .|. ++++.+|+
T Consensus 158 a~~al~~~~~~-~g---~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~ 202 (343)
T PRK09880 158 AIHAAHQAGDL-QG---KRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHHhcCCC-CC---CEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeC
Confidence 35556555443 45 799999998766555433322 343 46887775
No 286
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=52.33 E-value=13 Score=41.10 Aligned_cols=32 Identities=34% Similarity=0.645 Sum_probs=26.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 799999999999999887754 353 58889875
No 287
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=52.10 E-value=13 Score=41.48 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.2
Q ss_pred CceEEEeCcchhhHHHHHHHHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~ 344 (584)
..+|+|+|||.||+..|..+.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHh
Confidence 3799999999999999887765
No 288
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.92 E-value=14 Score=40.17 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=20.6
Q ss_pred CCceEEEeCcchhhHHHHHHHHHH
Q 007939 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~ 345 (584)
+..+++|+|+|.+|.++|+.+...
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~ 27 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL 27 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC
Confidence 348999999999999999888764
No 289
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=51.79 E-value=8.3 Score=39.58 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=27.0
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
+..|+|+|||.||+-.|-.+.. .|+ ++.++|++--
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~~ 59 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKLS 59 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCCC
Confidence 4789999999999988877643 454 5888887643
No 290
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=51.75 E-value=13 Score=39.10 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=25.6
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-+|+|+|||.||+..|-.|...- +.|. ++.++|++
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 67999999999999888876530 1254 47777773
No 291
>PLN02268 probable polyamine oxidase
Probab=51.75 E-value=5.8 Score=42.78 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=24.0
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCc
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~ 360 (584)
+|+|+|||-||+..|..|.+... -+..-||+.|
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r 34 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASF---KVTLLESRDR 34 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCC
Confidence 78999999999999999876421 1334466554
No 292
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=51.60 E-value=89 Score=33.76 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=29.4
Q ss_pred ccccccCChhhHHHHHhcCCCCCceEEE-EecCceeeccCCCCCCcccccc
Q 007939 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIV-LTDGSRILGLGDLGVQGIGIPI 198 (584)
Q Consensus 149 Glyis~~D~g~i~~~l~nwp~~~v~viV-VTDG~rILGLGDlG~~Gm~I~i 198 (584)
|.|-...|...+.++|+.. ++++.. .+.|+.+=-+-..+....-|.+
T Consensus 167 g~~~~~~d~~el~~lL~~~---Gi~~~~~~~~~~~~~~i~~~~~A~~niv~ 214 (406)
T cd01967 167 GEYNIGGDAWVIKPLLEEL---GIRVNATFTGDGTVDELRRAHRAKLNLVH 214 (406)
T ss_pred eccccchhHHHHHHHHHHc---CCEEEEEeCCCCCHHHHhhCccCCEEEEE
Confidence 5454455777888888864 567655 4556666666666655555543
No 293
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=51.60 E-value=16 Score=39.59 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=27.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi 370 (584)
.||||+|+|.||+..|..+... |- .-+|.++|++.-+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999887553 21 1369999987543
No 294
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=51.47 E-value=36 Score=35.00 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=24.8
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
||-|+|.|..|..+|..+... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999988753 43 57778865
No 295
>PRK07233 hypothetical protein; Provisional
Probab=51.02 E-value=12 Score=39.60 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=24.7
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
||+|+|||-||+..|..|.+. |. ++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G~-------~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----GH-------EVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEEeC
Confidence 689999999999998777653 53 57777776
No 296
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=50.97 E-value=14 Score=40.59 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=26.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~-----~G~-------~V~vie~~ 165 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAK-----AGH-------SVTVFEAL 165 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 899999999999999988855 343 58888874
No 297
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=50.77 E-value=14 Score=41.85 Aligned_cols=32 Identities=22% Similarity=0.490 Sum_probs=25.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 799999999999999887654 353 47888863
No 298
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=50.74 E-value=15 Score=37.11 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=27.3
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
.|+|+|||-+|+.+|-.|.. .|. ++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G~-------~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RGH-------SVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TTS-------EEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEeeccc
Confidence 38999999999999988876 353 7999999833
No 299
>PRK06847 hypothetical protein; Provisional
Probab=50.50 E-value=15 Score=38.42 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.5
Q ss_pred ceEEEeCcchhhHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (584)
.+|+|+|||.||+..|..|..
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 689999999999999988754
No 300
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=50.40 E-value=36 Score=41.50 Aligned_cols=192 Identities=13% Similarity=0.178 Sum_probs=96.6
Q ss_pred cCChhhHHHHHhcCCCCCceEE-EEecCceeeccCCCCCCcccccchhhh-hhhh-----hcCCCCCCceeEEeeccCCc
Q 007939 154 AKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLD-VYVA-----AAGINPQRILPVMLDVGTNN 226 (584)
Q Consensus 154 ~~D~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGKl~-LY~a-----~gGI~P~~~LPV~LDvGTnN 226 (584)
..|-..+..+|... +++++ ++|.++.+=-+-+.+...+-|.++.-. .+.+ -=||. .+-
T Consensus 196 ~gd~~elk~lL~~~---Gi~v~~~~~g~~t~eei~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP---~~~--------- 260 (917)
T PRK14477 196 AGDLWGMLPLFDRL---GIRVLSCISGDAKFEELRYAHRAKLNVIICSKSLTNLARKMEKRYGIP---YLE--------- 260 (917)
T ss_pred cchHHHHHHHHHHc---CCeEEEEcCCCCCHHHHHhcccCCEEEEEcHHHHHHHHHHHHHHhCCC---EEe---------
Confidence 34444566666654 56664 556666666666666666666553322 2221 11444 110
Q ss_pred cccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCeeeEec-cCCCChHHHHHHHHhhccCccccCcchhHHHHHH
Q 007939 227 QKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFE-DFQMKWAFETLERYRKRFCMFNDDIQGTAGVALA 305 (584)
Q Consensus 227 ~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~lIqfE-Df~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LA 305 (584)
.+ ++|+ +-.|+|+..+.+.+-.-.-..+ +.-...+-+.+++.+.+
T Consensus 261 -----~~-p~Gi-----------~~T~~~L~~ia~~~g~~~~~~~~~~~~~~~e~~i~~e~~~----------------- 306 (917)
T PRK14477 261 -----ES-FYGM-----------TDTAKALRDIARELDDAGGGLEKRVLQDRVEKLIAEEEAK----------------- 306 (917)
T ss_pred -----cC-ccCH-----------HHHHHHHHHHHHHhCCcccCCchhhhHHHHHHHHHHHHHH-----------------
Confidence 11 1332 2367888888777621110000 00123355566666555
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhh--hc
Q 007939 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA--AP 383 (584)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k--~~ 383 (584)
+.-++......|+. .|++++|.+.-..++++.+.+ -|+. +...-.+ . .+..+.. +.
T Consensus 307 -~~~~l~~~~~~L~G---Krv~i~~g~~~~~~la~~l~e-----lGme-------vv~~g~~-----~-~~~~d~~~~~~ 364 (917)
T PRK14477 307 -CRAALAPYRARLEG---KRVVLFTGGVKTWSMVNALRE-----LGVE-------VLAAGTQ-----N-STLEDFARMKA 364 (917)
T ss_pred -HHHHHHHHHHHccC---CEEEEECCCchHHHHHHHHHH-----CCCE-------EEEEcCC-----C-CCHHHHHHHHH
Confidence 33444444456666 999999988888888887755 4553 2211111 0 0111111 11
Q ss_pred cccccCCcCCcccCCCHHHHhcccCCcEEEeec
Q 007939 384 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (584)
Q Consensus 384 fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S 416 (584)
+..+...+-...+...|++.++..|||.+||-|
T Consensus 365 ~~~~~~~vi~~~d~~el~~~i~~~~pDLlig~~ 397 (917)
T PRK14477 365 LMHKDAHIIEDTSTAGLLRVMREKMPDLIVAGG 397 (917)
T ss_pred hcCCCCEEEECCCHHHHHHHHHhcCCCEEEecC
Confidence 111111110011234588899999999999965
No 301
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=49.98 E-value=85 Score=33.06 Aligned_cols=127 Identities=20% Similarity=0.332 Sum_probs=71.9
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
||.|+|+|..|..+|..+.. .|+. ..++++|..-=..++. -++.+.. +|-.+. .. ...+. +.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~~-----~ev~l~D~~~~~~~g~a~dl~~~~-~~~~~~-~i----~~~d~-~~ 64 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGLA-----SEIVLVDINKAKAEGEAMDLAHGT-PFVKPV-RI----YAGDY-AD 64 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCCC-----CEEEEEECCchhhhhHHHHHHccc-cccCCe-EE----eeCCH-HH
Confidence 79999999999998887665 3542 5799999741001100 0122111 221111 00 11344 45
Q ss_pred hcccCCcEEEeecCCC---C-CC----------CHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcEEE
Q 007939 404 VRKVKPHVLLGLSGVG---G-VF----------NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIVF 467 (584)
Q Consensus 404 V~~vkptvLIG~S~~~---g-~F----------teevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~--Grai~ 467 (584)
++. .|+.|=+.+.+ | .. =+++++.+.+ ++..-+|+-.+||. +....-+++.+. -+-+|
T Consensus 65 l~~--aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~vi 138 (308)
T cd05292 65 CKG--ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVI 138 (308)
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHee
Confidence 766 77766333332 1 11 1356666643 77888999999996 566667776651 23477
Q ss_pred EeCCCCC
Q 007939 468 ASGSPFE 474 (584)
Q Consensus 468 AsGSPf~ 474 (584)
++|.-.+
T Consensus 139 G~gt~LD 145 (308)
T cd05292 139 GSGTVLD 145 (308)
T ss_pred cccchhh
Confidence 8776553
No 302
>PRK09126 hypothetical protein; Provisional
Probab=49.56 E-value=14 Score=38.86 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=18.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
..|+|+|||.||+..|-.|...
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~ 25 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS 25 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC
Confidence 6799999999999998887653
No 303
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=49.48 E-value=58 Score=34.97 Aligned_cols=37 Identities=19% Similarity=0.038 Sum_probs=26.4
Q ss_pred CHHHHhcccCCcE-EEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 399 SLLEVVRKVKPHV-LLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 399 ~L~evV~~vkptv-LIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
.|.+.... .|+ ++|-|-..+ |...++++|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma---~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA---FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH---hCCCEEE
Confidence 46666666 787 777664333 5556999996 6899997
No 304
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=48.77 E-value=14 Score=38.99 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=24.5
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
|+|+|||.||+.+|..+.. .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999976643 354 588899764
No 305
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=48.57 E-value=92 Score=34.41 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=28.9
Q ss_pred CCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 398 ASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 398 ~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
.++.+.+.. .|+++=.| ....|.-.++++|+ +..|+|.
T Consensus 362 ~~v~~~l~~--aDv~vlpS-~~Eg~p~~vlEAma---~G~PVVa 399 (475)
T cd03813 362 QNVKEYLPK--LDVLVLTS-ISEGQPLVILEAMA---AGIPVVA 399 (475)
T ss_pred ccHHHHHHh--CCEEEeCc-hhhcCChHHHHHHH---cCCCEEE
Confidence 346677765 88888655 45678889999996 5899987
No 306
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=48.45 E-value=16 Score=39.24 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=27.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~ 371 (584)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+-
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~G 39 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEPG 39 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCCC
Confidence 5699999999999999888775 43 477777765543
No 307
>PRK08163 salicylate hydroxylase; Provisional
Probab=48.39 E-value=16 Score=38.64 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.3
Q ss_pred ceEEEeCcchhhHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (584)
.+|+|+|||.||+-.|-.|..
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHh
Confidence 689999999999999877754
No 308
>PLN02852 ferredoxin-NADP+ reductase
Probab=48.37 E-value=22 Score=40.27 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=27.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.||+|+|||.||+..|..|... ..|. +|.++|+.
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~---~~g~-------~Vtv~E~~ 60 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKA---HDGA-------RVDIIERL 60 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhh---CCCC-------eEEEEecC
Confidence 8999999999999999988753 1243 68899886
No 309
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=48.20 E-value=49 Score=33.97 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=25.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.||.|+|.|..|..+|..+... |. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~-----g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA-----GY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 4899999999999999988652 42 47777764
No 310
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.02 E-value=17 Score=40.42 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.3
Q ss_pred CCCceEEEeCcchhhHHHHHHHHHH
Q 007939 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~ 345 (584)
|...||+|+|+|-+|+++|+.+...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~ 37 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSEL 37 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHC
Confidence 4448999999999999999998754
No 311
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=47.63 E-value=12 Score=39.17 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.3
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
+|||+|+|.||+-.|+.+..... ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~---------~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPL---------PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCC---------CCCEEEEECCCCC
Confidence 58999999999888887754211 1247999997654
No 312
>PLN02676 polyamine oxidase
Probab=47.62 E-value=36 Score=38.18 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
.+++|+|||.+|+..|..|...
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~ 48 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEA 48 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHc
Confidence 6899999999999999888763
No 313
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=47.52 E-value=54 Score=38.48 Aligned_cols=137 Identities=17% Similarity=0.243 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHCCCeeeEeccCCCC----hHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEE
Q 007939 252 VDEFMEAVHARWPKAIVQFEDFQMK----WAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIV 327 (584)
Q Consensus 252 vdefv~av~~~~P~~lIqfEDf~~~----nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv 327 (584)
-++|++.++.++-+-.| ||.+.. =--.+++||..++-.|+-... .++.|-. ..++ .||+
T Consensus 71 ~~~V~Eli~~L~~nGFV--rDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~---akVl 133 (637)
T TIGR03693 71 QKRVFEIGEILYKNGFV--RDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKFE--LSRN---AKIL 133 (637)
T ss_pred HHHHHHHHHHHHhCCce--eecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhc---ccEE
Confidence 56777777777755444 344321 223478999988755543221 1112211 1266 9999
Q ss_pred EeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccC-Cc--C--CcccCCCHHH
Q 007939 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG-DF--M--GLREGASLLE 402 (584)
Q Consensus 328 ~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~-~~--~--~~~~~~~L~e 402 (584)
++|.|..|.-+.-.|+ +.|+ .+|..+|.+=..+ +...+.+. .+.|++.+ +. . +.....++.|
T Consensus 134 VlG~Gg~~s~lv~sL~-----~sG~------~~I~~vd~D~v~S-NlnRIgEl-~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 134 AAGSGDFLTKLVRSLI-----DSGF------PRFHAIVTDAEEH-ALDRIHEL-AEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred EEecCchHHHHHHHHH-----hcCC------CcEEEEeccccch-hhhHHHHH-HHHHHHhCCCCceEeccCCcchhHHH
Confidence 9999987765554444 3576 5798887664422 21112233 44444421 11 0 0123467888
Q ss_pred HhcccCCcEEEeecCCCC
Q 007939 403 VVRKVKPHVLLGLSGVGG 420 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~g 420 (584)
+++. -|++|=+|..+.
T Consensus 201 v~~~--~DiVi~vsDdy~ 216 (637)
T TIGR03693 201 AFEP--ADWVLYVSDNGD 216 (637)
T ss_pred hhcC--CcEEEEECCCCC
Confidence 8877 688887776544
No 314
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=47.26 E-value=14 Score=39.29 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
.+|+|+|||.||+..|-.|...
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~ 40 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDS 40 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcC
Confidence 5799999999999999888653
No 315
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=47.19 E-value=19 Score=38.08 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=26.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
++|+|+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 799999999999998887764 34 368889985
No 316
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=47.18 E-value=1.3e+02 Score=33.11 Aligned_cols=156 Identities=13% Similarity=0.194 Sum_probs=88.1
Q ss_pred cccchHHHHHHHhhcccCCC------------ccccc-----cCChhhHHHHHhcCCCCCceEEEEec-CceeeccCCCC
Q 007939 129 YTPTVGLVCQNYSGLFRRPR------------GMYFS-----AKDKGEMMSMIYNWPAQQVDMIVLTD-GSRILGLGDLG 190 (584)
Q Consensus 129 YTPtVg~ac~~~s~~~r~pr------------Glyis-----~~D~g~i~~~l~nwp~~~v~viVVTD-G~rILGLGDlG 190 (584)
|+.+...++..+-..+..++ |.|.. ..|...+..+|+.. ++++..+.- |+.+=-+-..+
T Consensus 136 ~~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~---Gi~v~~~~~~~~~~~ei~~~~ 212 (426)
T cd01972 136 WRSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNEL---GLRVNAIIAGGCSVEELERAS 212 (426)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHc---CCeEEEEeCCCCCHHHHHhcc
Confidence 44555556655554443321 55543 25667788888864 677765554 47777777777
Q ss_pred CCcccccchh-hhhhhh-----hcCCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCC
Q 007939 191 VQGIGIPIGK-LDVYVA-----AAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP 264 (584)
Q Consensus 191 ~~Gm~I~iGK-l~LY~a-----~gGI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P 264 (584)
-...-|.++. ..++.+ --||. .+.+.+=+|- +-.++|+..+.+.+-
T Consensus 213 ~A~lniv~~~~~g~~~a~~Lee~~GiP---~~~~~~P~G~-------------------------~~T~~~l~~ia~~~g 264 (426)
T cd01972 213 EAAANVTLCLDLGYYLGAALEQRFGVP---EIKAPQPYGI-------------------------EATDKWLREIAKVLG 264 (426)
T ss_pred cCCEEEEEChhHHHHHHHHHHHHhCCC---eEecCCccCH-------------------------HHHHHHHHHHHHHhC
Confidence 7666666664 223221 12444 2211112232 226788888877653
Q ss_pred CeeeEeccCCCChHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHH
Q 007939 265 KAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 265 ~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~ 344 (584)
+ + ..+-+.+++.+.++ ..++......|+. .|++++|.+.-..++++.+.+
T Consensus 265 ---~--~----~~~e~~i~~e~~~~------------------~~~l~~~~~~l~G---k~~~i~~~~~~~~~~~~~l~e 314 (426)
T cd01972 265 ---M--E----AEAEAVIEREHERV------------------APEIEELRKALKG---KKAIVETGAAYGHLLIAVLRE 314 (426)
T ss_pred ---C--c----HHHHHHHHHHHHHH------------------HHHHHHHHHHhCC---CEEEEEeCCccHHHHHHHHHH
Confidence 1 1 13555666655542 2223333344555 899999988888888888765
Q ss_pred H
Q 007939 345 A 345 (584)
Q Consensus 345 ~ 345 (584)
.
T Consensus 315 l 315 (426)
T cd01972 315 L 315 (426)
T ss_pred c
Confidence 4
No 317
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=47.17 E-value=16 Score=40.08 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=25.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~-----~g~-------~V~lie~~ 172 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLAR-----KGY-------DVTIFEAR 172 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccC
Confidence 799999999999988877744 343 68888875
No 318
>PRK12831 putative oxidoreductase; Provisional
Probab=47.12 E-value=18 Score=40.25 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=26.7
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..+|+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 38999999999999999888763 43 58888864
No 319
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=47.10 E-value=1.1e+02 Score=33.80 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=50.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChh-hhccccccCC--cCCcccCCCH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA-AAPFAKDPGD--FMGLREGASL 400 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~-k~~fA~~~~~--~~~~~~~~~L 400 (584)
.|++++|-.....++++.|.+ .|+.. -....|. ..+.+.+. +...++...+ .-...+...+
T Consensus 301 krv~v~g~~~~~~~l~~~L~e-----lG~~~-----~~v~~~~------~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~ 364 (429)
T cd03466 301 RKAAIYGEPDFVVAITRFVLE-----NGMVP-----VLIATGS------ESKKLKEKLEEDLKEYVEKCVILDGADFFDI 364 (429)
T ss_pred CEEEEEcCHHHHHHHHHHHHH-----CCCEE-----EEEEeCC------CChHHHHHHHHHHHhcCCceEEEeCCCHHHH
Confidence 899999988888888888864 36531 0111211 01111111 0011110000 0001133568
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 007939 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (584)
Q Consensus 401 ~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt 447 (584)
++.++..+||++||-|. .+.+-+.| .-|.| ..+.|.
T Consensus 365 ~~~l~~~~~dliiG~s~-----~~~~a~~~-----~ip~~-~~~~P~ 400 (429)
T cd03466 365 ESYAKELKIDVLIGNSY-----GRRIAEKL-----GIPLI-RIGFPI 400 (429)
T ss_pred HHHHHhcCCCEEEECch-----hHHHHHHc-----CCCEE-EecCCc
Confidence 88889999999999774 24444444 35643 455554
No 320
>PRK06834 hypothetical protein; Provisional
Probab=47.02 E-value=18 Score=40.44 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=27.4
Q ss_pred CCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
+|+..|+|+|||.+|+-.|-.|.. .|+ ++.++|+.-
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 355899999999999999888755 465 467777653
No 321
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=46.98 E-value=18 Score=29.73 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=23.0
Q ss_pred EeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 328 ~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
|+|||.+|+..|-.|.+. | .+|.+++++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999888663 3 47999998743
No 322
>PRK11445 putative oxidoreductase; Provisional
Probab=46.94 E-value=18 Score=38.15 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=23.4
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.|+|+|||.||...|..|... . ++.++|++
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~------------~V~liE~~ 32 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-M------------KVIAIDKK 32 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-C------------CEEEEECC
Confidence 589999999999998876543 2 47777765
No 323
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=46.87 E-value=19 Score=41.58 Aligned_cols=149 Identities=13% Similarity=0.193 Sum_probs=86.8
Q ss_pred CCChhhhhHhHHHHHHHHHHHCCC-eeeEeccCCCChHHHHHHHHhhc------cCccccCcchhHHHHHHHHHHHHH--
Q 007939 242 RLEGEEYLSIVDEFMEAVHARWPK-AIVQFEDFQMKWAFETLERYRKR------FCMFNDDIQGTAGVALAGLLGTVR-- 312 (584)
Q Consensus 242 R~~g~~Y~~~vdefv~av~~~~P~-~lIqfEDf~~~nAf~lL~ryr~~------~~~FNDDiQGTaaV~LAgll~Alr-- 312 (584)
+++|=.=..-.+ |.+.|++.-.+ .+|-.-..+...-.+++++.... .|-+-|=++ ..+.+|
T Consensus 157 ~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~---------~~~~lreI 226 (588)
T COG1086 157 KIRGVPVLGRIE-IERVVEELGIQLILIAIPSASQEERRRILLRLARTGIAVRILPQLTDLKD---------LNGQLREI 226 (588)
T ss_pred EEeceeeechhH-HHHHHHHcCCceEEEecCCCCHHHHHHHHHHHHhcCCcEEecCcHHHHHH---------hccccccC
Confidence 344422233344 66666665544 57777778888888888887654 344444222 112222
Q ss_pred ----HhCCCC---------CCCCCceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCC
Q 007939 313 ----AQGLSL---------TDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (584)
Q Consensus 313 ----~~g~~l---------~dl~~~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~ 378 (584)
..|++. ..+++++|++-|| ||.|-.++++|+..-. ++|.++|+.=. ++.
T Consensus 227 ~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----------~~i~l~~~~E~------~~~ 289 (588)
T COG1086 227 EIEDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----------KEIILFSRDEY------KLY 289 (588)
T ss_pred CHHHHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----------CEEEEecCchH------HHH
Confidence 112221 1234599999998 6888888888877522 68999987411 222
Q ss_pred hhhhccccccC--C----cCCcccCCCHHHHhcccCCcEEEeecC
Q 007939 379 PAAAPFAKDPG--D----FMGLREGASLLEVVRKVKPHVLLGLSG 417 (584)
Q Consensus 379 ~~k~~fA~~~~--~----~~~~~~~~~L~evV~~vkptvLIG~S~ 417 (584)
...++|.+.-+ . .....+...+.++++..|||+.+=+.+
T Consensus 290 ~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 290 LIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred HHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEhhh
Confidence 22333333100 0 011235577999999999999997765
No 324
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=46.81 E-value=1.1e+02 Score=33.09 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=59.6
Q ss_pred CCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCC
Q 007939 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
+|...++-|+|.|..|..||+.+... |+ +|...|++.. ++..+.+- ..+.+
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~F-----gm-------~v~y~~~~~~--------~~~~~~~~---------~~y~~ 193 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGF-----GM-------KVLYYDRSPN--------PEAEKELG---------ARYVD 193 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCCC--------hHHHhhcC---------ceecc
Confidence 45559999999999999999998743 32 5666776532 11111110 12344
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007939 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~----~~g~Fteevv~~M~~~~~erPIIFaLSN 445 (584)
|.|.++. .|+|+-..- ..++|+++.++.|. +.-+|.=.|.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk----~ga~lVNtaR 237 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK----PGAILVNTAR 237 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC----CCeEEEECCC
Confidence 9999988 899885431 13789999999993 3455554444
No 325
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=46.50 E-value=18 Score=42.04 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=26.1
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..||+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 37999999999999999887653 43 57778764
No 326
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=46.34 E-value=17 Score=44.81 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=26.9
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..||+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar-----~G~-------~VtV~Ek~ 571 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLAR-----AGH-------PVTVFERE 571 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecc
Confidence 4899999999999999998865 353 57888865
No 327
>PRK06753 hypothetical protein; Provisional
Probab=46.25 E-value=18 Score=37.92 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=17.5
Q ss_pred eEEEeCcchhhHHHHHHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~ 344 (584)
+|+|+|||.||+..|-.|..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999888755
No 328
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=46.13 E-value=17 Score=35.91 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=24.8
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
.|+|+|||.||+-.|-.+.. .|+ ++.++|+.-.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 38999999999999877643 454 5778887643
No 329
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=46.13 E-value=55 Score=32.70 Aligned_cols=59 Identities=19% Similarity=0.423 Sum_probs=39.8
Q ss_pred eEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
||+|.|| |-.|-.+++.+.+ .| .+++.+++. ..++. +..++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~d~~-----------------~~~~~~~~ 45 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QLDLT-----------------DPEALERL 45 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------ccCCC-----------------CHHHHHHH
Confidence 6899997 8777777776654 24 357777763 11111 22458888
Q ss_pred hcccCCcEEEeecCC
Q 007939 404 VRKVKPHVLLGLSGV 418 (584)
Q Consensus 404 V~~vkptvLIG~S~~ 418 (584)
++..+||++|=+.+.
T Consensus 46 ~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 46 LRAIRPDAVVNTAAY 60 (287)
T ss_pred HHhCCCCEEEECCcc
Confidence 988899999987764
No 330
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=46.03 E-value=19 Score=37.15 Aligned_cols=32 Identities=47% Similarity=0.776 Sum_probs=26.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999988764 4 258888863
No 331
>PRK08219 short chain dehydrogenase; Provisional
Probab=45.85 E-value=60 Score=30.88 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=16.3
Q ss_pred CCCHHHHhccc-CCcEEEeecCCC
Q 007939 397 GASLLEVVRKV-KPHVLLGLSGVG 419 (584)
Q Consensus 397 ~~~L~evV~~v-kptvLIG~S~~~ 419 (584)
..++.++++.+ ++|++|-+.+..
T Consensus 59 ~~~~~~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 59 PEAIAAAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHHHHHHhcCCCCEEEECCCcC
Confidence 34577777655 689999887754
No 332
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=45.58 E-value=19 Score=37.62 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=27.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
..|+|+|||-+|+.+|-.|.+. | .++.++|+...
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~~ 37 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFMP 37 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecccC
Confidence 5799999999999999777663 4 36889997643
No 333
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=45.51 E-value=14 Score=39.36 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=41.1
Q ss_pred EEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccc--cCC--------cCCc
Q 007939 326 IVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD--PGD--------FMGL 394 (584)
Q Consensus 326 iv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~--~~~--------~~~~ 394 (584)
|+|-|| ||.|--++++|+..-- ++|+++|+.-- .|-..+++|.+. .+. ....
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----------~~lil~d~~E~------~l~~l~~~l~~~~~~~~v~~~~~~vigDv 63 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----------KKLILFDRDEN------KLYELERELRSRFPDPKVRFEIVPVIGDV 63 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------------SEEEEEES-HH------HHHHHHHHCHHHC--TTCEEEEE--CTSC
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----------CeEEEeCCChh------HHHHHHHHHhhcccccCcccccCceeecc
Confidence 455654 7888888888776422 68999998511 122233333210 000 0111
Q ss_pred ccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHh
Q 007939 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 430 (584)
Q Consensus 395 ~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M 430 (584)
.+...|..+++..+||+++=+++. ..|..|
T Consensus 64 rd~~~l~~~~~~~~pdiVfHaAA~------KhVpl~ 93 (293)
T PF02719_consen 64 RDKERLNRIFEEYKPDIVFHAAAL------KHVPLM 93 (293)
T ss_dssp CHHHHHHHHTT--T-SEEEE------------HHHH
T ss_pred cCHHHHHHHHhhcCCCEEEEChhc------CCCChH
Confidence 234568889998899999988774 455555
No 334
>PRK07045 putative monooxygenase; Reviewed
Probab=45.43 E-value=19 Score=38.12 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=18.6
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
-+|+|+|||.||+..|-.|...
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~ 27 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR 27 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc
Confidence 5899999999999999777653
No 335
>PRK06823 ornithine cyclodeaminase; Validated
Probab=45.35 E-value=1.4e+02 Score=31.89 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=65.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.++.++|+|.-+...++.++.. ..+ ++|+++|+. .+ ....+...+.+...+ .....+.+|+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v----~~i------~~v~v~~r~----~~--~a~~~~~~~~~~~~~---v~~~~~~~~a 189 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNV----TDC------RQLWVWGRS----ET--ALEEYRQYAQALGFA---VNTTLDAAEV 189 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH--HHHHHHHHHHhcCCc---EEEECCHHHH
Confidence 6899999999887777765553 122 678888773 11 111111111111111 1124679999
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCC-ccCCCHHHHh
Q 007939 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADAF 458 (584)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Fteevv~~M~~~~~erPIIFaLSNPt~-~aE~tpeda~ 458 (584)
|+. .||++-+.+. .-.|..++|+. .-.|-+...-++ +.|+.++-..
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~~-------G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQP-------GTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcCC-------CcEEEecCCCCcccccCCHHHHh
Confidence 988 9999976443 35688887763 345777765443 6799987643
No 336
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.31 E-value=24 Score=38.95 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=21.6
Q ss_pred CCCCCCCCCceEEEeCcchhhHHHHHHHHH
Q 007939 315 GLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 315 g~~l~dl~~~riv~~GAGsAg~GiA~li~~ 344 (584)
+..++. ++++|+|+|.+|+.+|+.+.+
T Consensus 11 ~~~~~~---~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 11 HSDWQG---LRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred ccCcCC---CEEEEECCCHHHHHHHHHHHH
Confidence 344445 899999999999999888765
No 337
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=45.22 E-value=1.6e+02 Score=29.76 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=30.2
Q ss_pred CCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 398 ASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 398 ~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
.++.+.+.. .|++|-.|.....|.--++++|+ +..|+|.
T Consensus 255 ~~~~~~l~~--ad~~i~ps~~~e~~~~~l~EA~a---~G~PvI~ 293 (355)
T cd03819 255 SDMPAAYAL--ADIVVSASTEPEAFGRTAVEAQA---MGRPVIA 293 (355)
T ss_pred ccHHHHHHh--CCEEEecCCCCCCCchHHHHHHh---cCCCEEE
Confidence 347777777 89999777456778889999995 5889986
No 338
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=45.13 E-value=19 Score=38.25 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=24.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 589999999999999876644 465 46677754
No 339
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=44.98 E-value=18 Score=44.11 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=30.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC----cccccC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITKE 373 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~----GLi~~~ 373 (584)
.||+|+|+|.||+..|..|... |. ++.++|+. |++.-+
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~yG 348 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRYG 348 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEcc
Confidence 8999999999999999888763 53 58888875 665543
No 340
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=44.88 E-value=17 Score=42.78 Aligned_cols=108 Identities=18% Similarity=0.095 Sum_probs=59.6
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---c-----cCCCHHHHhcccCCcEEEEeCCCC
Q 007939 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---N-----AECTAADAFKHAGENIVFASGSPF 473 (584)
Q Consensus 402 evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~---~-----aE~tpeda~~wT~Grai~AsGSPf 473 (584)
++=+.++|+++|..+| ...=-.++.+.+ . +-+|=|.+=..||.+ . .+-|.++..++.-- |+..-=.
T Consensus 413 ~l~~~~~~~~ilasNT-Ssl~i~~la~~~-~-~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk 486 (715)
T PRK11730 413 EVEQKVREDTILASNT-STISISLLAKAL-K-RPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGK 486 (715)
T ss_pred HHHhhCCCCcEEEEcC-CCCCHHHHHhhc-C-CCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCC
Confidence 4445578999997776 333334444444 2 445658888999973 2 23343333332210 1111113
Q ss_pred CccccCCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHHH
Q 007939 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (584)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~ 520 (584)
.||..+ ..||-.=|-..+|-+--++.+...- .|.+.+-+|.+
T Consensus 487 ~pv~v~----d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~~ 528 (715)
T PRK11730 487 TPIVVN----DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVME 528 (715)
T ss_pred ceEEec----CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 344431 5688888888888766655555433 67666666643
No 341
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=44.84 E-value=21 Score=38.11 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=26.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..|+|+|||-+|+.+|-.|... ..| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~---~~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQER---YPG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHh---CCC-------CeEEEEeCC
Confidence 4699999999999999888763 113 368899986
No 342
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=44.82 E-value=17 Score=38.11 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=24.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 479999999999999877654 354 47777765
No 343
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=44.46 E-value=19 Score=38.16 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=32.1
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
++|.. -+|+++|+|.-|.-+|+.|+.+.+ ++|.++|.+
T Consensus 22 ~KL~~---SrVLVVG~GGLGsEVAKnLaLAGV-----------GsItIvDdD 59 (287)
T PTZ00245 22 QQLMH---TSVALHGVAGAAAEAAKNLVLAGV-----------RAVAVADEG 59 (287)
T ss_pred HHHhh---CeEEEECCCchHHHHHHHHHHcCC-----------CeEEEecCC
Confidence 45666 999999999999999998887755 689999987
No 344
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=44.43 E-value=54 Score=33.88 Aligned_cols=117 Identities=20% Similarity=0.277 Sum_probs=71.8
Q ss_pred CCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHH--HCCCe-eeEeccCCCChHHH-HHHH
Q 007939 209 GINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHA--RWPKA-IVQFEDFQMKWAFE-TLER 284 (584)
Q Consensus 209 GI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~--~~P~~-lIqfEDf~~~nAf~-lL~r 284 (584)
||+ .+|+.+.+| ++..+++. +--.|+|.+.+++ ..|+. ....+|| .++|+ ++++
T Consensus 20 ~I~---vvPl~I~~~--~~~y~D~~---------------~i~~~~~y~~~~~~~~~p~TS~ps~~~~--~~~~~~l~~~ 77 (275)
T TIGR00762 20 GIT---VVPLTVIID--GKTYRDGV---------------DITPEEFYEKLKESKELPKTSQPSPGEF--LELYEKLLEE 77 (275)
T ss_pred CCE---EEEEEEEEC--CEEeecCC---------------CCCHHHHHHHHHhcCCCCCcCCCCHHHH--HHHHHHHHhC
Confidence 777 999999886 34443321 1124677776654 23543 5555555 33332 3333
Q ss_pred HhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHH--HHHHcCCChhhhc
Q 007939 285 YRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA--AARMAGNNDAFAR 358 (584)
Q Consensus 285 yr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~--~~~~~Gls~eeA~ 358 (584)
| +.+-+++ =+-.|.|-+++.+...+.+.+ .+|-++-..+++.|.+.++..+ |. ++|.|.+|..
T Consensus 78 ~-~~vi~i~------iSs~lSgty~~a~~aa~~~~~---~~i~ViDS~~~s~~~g~~v~~a~~~~-~~G~s~~eI~ 142 (275)
T TIGR00762 78 G-DEVLSIH------LSSGLSGTYQSARQAAEMVDE---AKVTVIDSKSASMGLGLLVLEAAKLA-EEGKSLEEIL 142 (275)
T ss_pred C-CeEEEEE------cCCchhHHHHHHHHHHhhCCC---CCEEEECChHHHHHHHHHHHHHHHHH-HcCCCHHHHH
Confidence 3 2332222 233456666666666666666 7899999999999998888775 44 6899998853
No 345
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=44.07 E-value=40 Score=37.92 Aligned_cols=105 Identities=25% Similarity=0.409 Sum_probs=67.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC----cccccCCCCCChhhhccccccCCcCCcccCCC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~----GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
.+|+|+|||-||++-|-.|.+..- + -.+.+++++ |++..-.. ..|
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p-----~-----~~i~lfE~~~r~GG~l~T~~~------~G~--------------- 49 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGP-----D-----VEVTLFEADDRVGGLLRTVKI------DGF--------------- 49 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCC-----C-----CcEEEEecCCCCCceEEEEee------CCE---------------
Confidence 379999999999999988877530 1 247778775 33332110 000
Q ss_pred HHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhccc-CCcE-EEEeCCCCCccc
Q 007939 400 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA-GENI-VFASGSPFENVD 477 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT-~Gra-i~AsGSPf~pv~ 477 (584)
+. ..-|+.++.. .+++++.+. |+-.|+-+.|. .++. |+..
T Consensus 50 ~~----e~G~~~f~~~-------~~~~l~li~-------------------eLGled~l~~~~~~~~~i~~~-------- 91 (444)
T COG1232 50 LF----ERGPHHFLAR-------KEEILDLIK-------------------ELGLEDKLLWNSTARKYIYYD-------- 91 (444)
T ss_pred EE----eechhheecc-------hHHHHHHHH-------------------HhCcHHhhccCCcccceEeeC--------
Confidence 11 1235556543 279999984 89999988887 4444 4443
Q ss_pred cCCCeeeeccCccccccchhhHHH
Q 007939 478 LGNGKIGHVNQANNMYLFPGIGLG 501 (584)
Q Consensus 478 ~~~G~~~~p~Q~NN~~iFPGiglG 501 (584)
||.+.....| .+-+|.+-..
T Consensus 92 ---gkl~p~P~~~-i~~ip~~~~~ 111 (444)
T COG1232 92 ---GKLHPIPTPT-ILGIPLLLLS 111 (444)
T ss_pred ---CcEEECCccc-eeecCCcccc
Confidence 7888777776 9989877654
No 346
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=43.82 E-value=52 Score=35.12 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.8
Q ss_pred CCceEEEeCcchhhHHHHHHHHHH
Q 007939 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~ 345 (584)
.+.+|.|+|+|.-|-++|..|.+.
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHC
Confidence 449999999999999999988763
No 347
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=43.66 E-value=22 Score=38.72 Aligned_cols=40 Identities=35% Similarity=0.487 Sum_probs=32.1
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
.++++ |=||++|||..|--+++||+...+ ++|-+||-+-+
T Consensus 70 ~kl~~---syVVVVG~GgVGSwv~nmL~RSG~-----------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTN---SYVVVVGAGGVGSWVANMLLRSGV-----------QKIRIVDFDQV 109 (430)
T ss_pred HHhcC---cEEEEEecCchhHHHHHHHHHhcC-----------ceEEEechhhc
Confidence 34555 999999999999999999988655 57888886644
No 348
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=43.41 E-value=20 Score=44.21 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=26.6
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 3799999999999999988765 353 58888865
No 349
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=43.35 E-value=20 Score=40.31 Aligned_cols=34 Identities=29% Similarity=0.562 Sum_probs=27.0
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
-.|||+|+|.+|+++|..+.. .|+ ++.++|+..+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCCC
Confidence 469999999999999987765 365 4888988643
No 350
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=43.29 E-value=2e+02 Score=33.05 Aligned_cols=191 Identities=16% Similarity=0.174 Sum_probs=112.6
Q ss_pred hhhhHhHHHHHHHHHHHC-CCeeeEeccCCC--ChHHHHHHHHhhcc----------Ccc----ccCcchhHHHHHHHHH
Q 007939 246 EEYLSIVDEFMEAVHARW-PKAIVQFEDFQM--KWAFETLERYRKRF----------CMF----NDDIQGTAGVALAGLL 308 (584)
Q Consensus 246 ~~Y~~~vdefv~av~~~~-P~~lIqfEDf~~--~nAf~lL~ryr~~~----------~~F----NDDiQGTaaV~LAgll 308 (584)
.|-..+.-.||..+.+.- |..-+==+|++. ..---+++.|+... +.- |+-.-.|+-=+..++=
T Consensus 158 nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e 237 (514)
T KOG2250|consen 158 NEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVE 237 (514)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHH
Confidence 344445556666555533 777666677762 22233788888642 222 3333345544444443
Q ss_pred HHHHHhC--CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhh-ccc
Q 007939 309 GTVRAQG--LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA-PFA 385 (584)
Q Consensus 309 ~Alr~~g--~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~-~fA 385 (584)
+=+.-.+ +.++. .|+++=|-|--|.-.|..|.+... +-|-+-|++|.|.... .++..+. .++
T Consensus 238 ~~~~~~~~~~~~kg---kr~~i~G~Gnv~~~aa~~l~~~G~-----------kvvavsD~~G~l~np~-Gid~~eL~~~~ 302 (514)
T KOG2250|consen 238 AILNDANGKKGIKG---KRVVIQGFGNVGGHAAKKLSEKGA-----------KVVAVSDSKGVLINPD-GIDIEELLDLA 302 (514)
T ss_pred HHHHhccCCCCcCc---eEEEEeCCCchHHHHHHHHHhcCC-----------EEEEEEcCceeEECCC-CCCHHHHHHHH
Confidence 3333344 66777 999999999998888877776532 5688899999998754 3444332 222
Q ss_pred cccCCcCCcccC----C------CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCccCCCH
Q 007939 386 KDPGDFMGLREG----A------SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 454 (584)
Q Consensus 386 ~~~~~~~~~~~~----~------~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN-Pt~~aE~tp 454 (584)
.......+.+.. . .+.--|. |.|+++=+.++ +..|.|=.+...++.| |+|.==|| ||. -.+
T Consensus 303 ~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~--~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT---peA 374 (514)
T KOG2250|consen 303 DEKKTIKSFDGAKLSYEGYIAGLPPWTLVE--KCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT---PEA 374 (514)
T ss_pred HhhccccccccccccCccccccCcchhhHh--hCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC---hhH
Confidence 211000000000 0 1122233 48999999997 8888888888765455 89998899 654 234
Q ss_pred HHHhc
Q 007939 455 ADAFK 459 (584)
Q Consensus 455 eda~~ 459 (584)
.++++
T Consensus 375 ~~vle 379 (514)
T KOG2250|consen 375 DEVLE 379 (514)
T ss_pred HHHHH
Confidence 45555
No 351
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=43.13 E-value=32 Score=41.54 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=33.7
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCCh
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~ 379 (584)
.+||||+|+|.||+..|+.|..... .. .-+|.+++..--+.-+|..|+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~-~~-------~~~Itvi~~e~~~~Y~r~~L~~ 51 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKAD-AA-------NFDITVFCEEPRIAYDRVHLSS 51 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCC-CC-------CCeEEEEECCCCCcccCCcchH
Confidence 3699999999999999988875321 01 1369999887555445544443
No 352
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=42.91 E-value=2.1e+02 Score=28.70 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=29.6
Q ss_pred CCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 398 ASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 398 ~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
.++.+.++. .|++|..|.. ..|.-.++++|+ +..|+|.
T Consensus 254 ~~~~~~~~~--ad~~v~~s~~-e~~~~~~~Ea~a---~G~PvI~ 291 (360)
T cd04951 254 DDIAAYYNA--ADLFVLSSAW-EGFGLVVAEAMA---CELPVVA 291 (360)
T ss_pred ccHHHHHHh--hceEEecccc-cCCChHHHHHHH---cCCCEEE
Confidence 457777877 8899987764 568889999996 5789885
No 353
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=42.85 E-value=21 Score=38.99 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=24.9
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.++|+|||.||+.+|..+.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 68999999999999987764 24 368888874
No 354
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=42.85 E-value=23 Score=41.65 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=27.2
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 38999999999999999888653 53 58889874
No 355
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=42.71 E-value=18 Score=35.90 Aligned_cols=110 Identities=20% Similarity=0.351 Sum_probs=66.3
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhcccccc-CCcCCcccCCCHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDP-GDFMGLREGASLLE 402 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~-~~~~~~~~~~~L~e 402 (584)
||+|+||||+- ...++...+.+.+.++. +.|+|+|.+- +| +.+...-+.+++.. .++. .....++.|
T Consensus 1 KI~iIGaGS~~--~~~~l~~~l~~~~~l~~----~ei~L~Did~----~RL~~~~~~~~~~~~~~~~~~~-v~~ttd~~e 69 (183)
T PF02056_consen 1 KITIIGAGSTY--FPLLLLGDLLRTEELSG----SEIVLMDIDE----ERLEIVERLARRMVEEAGADLK-VEATTDRRE 69 (183)
T ss_dssp EEEEETTTSCC--HHHHHHHHHHCTTTSTE----EEEEEE-SCH----HHHHHHHHHHHHHHHHCTTSSE-EEEESSHHH
T ss_pred CEEEECCchHh--hHHHHHHHHhcCccCCC----cEEEEEcCCH----HHHHHHHHHHHHHHHhcCCCeE-EEEeCCHHH
Confidence 79999999985 45566666654455543 6899999852 22 11112222333321 1221 123578999
Q ss_pred HhcccCCcEEE---------------------eecC-------CCCCCC--------HHHHHHhhhcCCCCCeEEecCCC
Q 007939 403 VVRKVKPHVLL---------------------GLSG-------VGGVFN--------EEVLKAMRESDSVKPAIFAMSNP 446 (584)
Q Consensus 403 vV~~vkptvLI---------------------G~S~-------~~g~Ft--------eevv~~M~~~~~erPIIFaLSNP 446 (584)
|++. +|.+| |+-+ .+|.|. .|+.+.|. ++|+.--||=.+||
T Consensus 70 Al~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~-~~~PdAw~iNytNP 146 (183)
T PF02056_consen 70 ALEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIE-ELCPDAWLINYTNP 146 (183)
T ss_dssp HHTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHH-HHTTTSEEEE-SSS
T ss_pred HhCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHH-HhCCCcEEEeccCh
Confidence 9998 88887 3222 122222 57888884 58999999999999
Q ss_pred CC
Q 007939 447 TM 448 (584)
Q Consensus 447 t~ 448 (584)
..
T Consensus 147 ~~ 148 (183)
T PF02056_consen 147 MG 148 (183)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 356
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=42.65 E-value=21 Score=39.64 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.0
Q ss_pred ceEEEeCcchhhHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (584)
-.|+|+|||.||...|..+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 579999999999999987654
No 357
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=42.57 E-value=22 Score=35.31 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=38.8
Q ss_pred hhhhhcCCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCe-eeEeccCCCChH
Q 007939 203 VYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFEDFQMKWA 278 (584)
Q Consensus 203 LY~a~gGI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-lIqfEDf~~~nA 278 (584)
+-...+.+++ .+ ++||+|.| .+-++|.+-++.||+.+++..|++ +|-.|.+..++.
T Consensus 51 ~a~~ia~~~a-~~--~~ld~~~N-----------------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~ 107 (178)
T PF14606_consen 51 VADLIAEIDA-DL--IVLDCGPN-----------------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAG 107 (178)
T ss_dssp HHHHHHHS---SE--EEEEESHH-----------------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTT
T ss_pred HHHHHhcCCC-CE--EEEEeecC-----------------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcccc
Confidence 3345668875 44 48999987 466899999999999999999998 777788876655
No 358
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=42.42 E-value=17 Score=39.71 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=30.6
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHc--C--CChhhhcCc----EEEEecCccc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMA--G--NNDAFARNK----FFLLDKDGLI 370 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~--G--ls~eeA~~~----i~lvDs~GLi 370 (584)
++|+|+|||-||+..|..|.++.. .. | ++.=||+.| ++-+...|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~-~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKK-DYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhh-ccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 479999999999999999977531 11 2 455677664 4444444543
No 359
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=42.29 E-value=32 Score=38.79 Aligned_cols=154 Identities=23% Similarity=0.322 Sum_probs=87.9
Q ss_pred eeeccCcccccceecccchHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCceEEEEecCceeeccCCCCCCcc
Q 007939 115 RVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGI 194 (584)
Q Consensus 115 ~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~D~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm 194 (584)
.+..+|...+=.++..|..-+-..+==..|.+....| ++.|+ -|. |+ ... .|+-|
T Consensus 191 ~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~Y---krvGk------awK-RG--YLL------------YGPPG- 245 (457)
T KOG0743|consen 191 SVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFY---KRVGK------AWK-RG--YLL------------YGPPG- 245 (457)
T ss_pred ecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHH---HhcCc------chh-cc--cee------------eCCCC-
Confidence 4667888777777888876654333222333444444 33332 352 11 111 45555
Q ss_pred cccchhhhhhhhhcCCCCCCceeEEe-eccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCeeeEeccC
Q 007939 195 GIPIGKLDVYVAAAGINPQRILPVML-DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDF 273 (584)
Q Consensus 195 ~I~iGKl~LY~a~gGI~P~~~LPV~L-DvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~lIqfEDf 273 (584)
-||+++-.|.|+-==-...-+.| .|+.| +|.=.-....-++.+|-.|||
T Consensus 246 ---TGKSS~IaAmAn~L~ydIydLeLt~v~~n---------------------------~dLr~LL~~t~~kSIivIEDI 295 (457)
T KOG0743|consen 246 ---TGKSSFIAAMANYLNYDIYDLELTEVKLD---------------------------SDLRHLLLATPNKSILLIEDI 295 (457)
T ss_pred ---CCHHHHHHHHHhhcCCceEEeeeccccCc---------------------------HHHHHHHHhCCCCcEEEEeec
Confidence 47999999999865222444445 44432 332223333335679999999
Q ss_pred CCChHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc
Q 007939 274 QMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA 331 (584)
Q Consensus 274 ~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GA 331 (584)
..+|.+=++-.++-.-|.+ .-+-|||.||||++--.--.=.+ .||+|+=.
T Consensus 296 --Dcs~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~---ERIivFTT 345 (457)
T KOG0743|consen 296 --DCSFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGD---ERIIVFTT 345 (457)
T ss_pred --ccccccccccccccccccC---CcceeehHHhhhhhccccccCCC---ceEEEEec
Confidence 4556654444444444443 46779999999987644443334 78888754
No 360
>PRK07588 hypothetical protein; Provisional
Probab=42.16 E-value=22 Score=37.70 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.6
Q ss_pred eEEEeCcchhhHHHHHHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~ 344 (584)
+|+|+|+|.||+..|-.|..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 79999999999999877754
No 361
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=41.95 E-value=20 Score=37.63 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.8
Q ss_pred EEEeCcchhhHHHHHHHHHH
Q 007939 326 IVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~ 345 (584)
|+|+|||.||+..|..|...
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999888764
No 362
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=41.87 E-value=23 Score=37.01 Aligned_cols=33 Identities=33% Similarity=0.443 Sum_probs=26.1
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
.|+|+|||.+|+.+|-.|.. .|. ++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g~-------~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HGK-------KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999987764 353 5888988654
No 363
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=41.78 E-value=20 Score=39.86 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=30.8
Q ss_pred CCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.|++ .+|+++|+|..|.=+++.|+...+ ++|.++|.+
T Consensus 17 ~L~~---s~VlliG~gglGsEilKNLvL~GI-----------g~~tIvD~~ 53 (425)
T cd01493 17 ALES---AHVCLLNATATGTEILKNLVLPGI-----------GSFTIVDGS 53 (425)
T ss_pred HHhh---CeEEEEcCcHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 4556 999999999999888888877644 689999986
No 364
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=41.68 E-value=18 Score=38.29 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=25.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~ 38 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGR 38 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCC
Confidence 579999999999999877644 464 47788875
No 365
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=41.50 E-value=24 Score=39.37 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=26.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+++|+|+|.||+..|..|.. .|. +++++|+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 799999999999999987764 343 58888865
No 366
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=41.39 E-value=95 Score=29.57 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=17.4
Q ss_pred CCcEEEeecCCCCCCCHHHHHHhh
Q 007939 408 KPHVLLGLSGVGGVFNEEVLKAMR 431 (584)
Q Consensus 408 kptvLIG~S~~~g~Fteevv~~M~ 431 (584)
+-|++|++|..| -|+++++.+.
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHH
Confidence 369999999644 4799999884
No 367
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=41.26 E-value=22 Score=40.37 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=25.1
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
.|+|+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 69999999999999877754 24 3688888753
No 368
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=41.21 E-value=24 Score=38.38 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=26.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
-.|||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 469999999999999987765 34 4699999864
No 369
>PRK08013 oxidoreductase; Provisional
Probab=41.03 E-value=23 Score=37.97 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=24.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.|+|+|||.+|+-.|-.|.. .|+ ++.++|++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 579999999999999866644 465 46677764
No 370
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=40.84 E-value=29 Score=37.39 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=26.2
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccc
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~ 371 (584)
|+|+|||.||+.+|-.|... ..|+ ++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g~-------~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPDF-------RIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCCC-------eEEEEeCCCCCC
Confidence 79999999999999777653 1254 577888765443
No 371
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=40.82 E-value=21 Score=37.40 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=30.4
Q ss_pred CCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccccc
Q 007939 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (584)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~ 372 (584)
|++++|+++|.|..|-=+++.|.. .|. .+|.++|.+-+=.+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 444999999999777666655554 565 68999999866544
No 372
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=40.82 E-value=23 Score=38.73 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=26.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
-.++|+|||+||+..|..+... | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 4699999999999988876653 4 3699999864
No 373
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=40.80 E-value=1.4e+02 Score=34.18 Aligned_cols=33 Identities=9% Similarity=0.281 Sum_probs=24.4
Q ss_pred HHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHH
Q 007939 309 GTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 309 ~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~ 344 (584)
.++.-...-|.. .|+.++|-..-.+|+++.|.+
T Consensus 352 dam~d~~~~l~G---KrvaI~gdpd~~~~l~~fL~E 384 (515)
T TIGR01286 352 DAMTDSHAWLHG---KRFAIYGDPDFVMGLVRFVLE 384 (515)
T ss_pred HHHHHHHHHhcC---ceEEEECCHHHHHHHHHHHHH
Confidence 333333334555 899999999999999999875
No 374
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=40.78 E-value=16 Score=37.59 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=27.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi 370 (584)
-.++|+|||.||+..|..+.. .|+ ++.+++++.-+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~-----~G~-------~V~vlEk~~~~ 56 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAK-----NGL-------KVCVLERSLAF 56 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCCCC
Confidence 789999999999999877643 354 68889887543
No 375
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=40.72 E-value=18 Score=38.47 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=24.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 469999999999999977654 454 47777765
No 376
>PLN02463 lycopene beta cyclase
Probab=40.57 E-value=22 Score=39.57 Aligned_cols=32 Identities=38% Similarity=0.567 Sum_probs=24.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 468999999999999977754 365 47777764
No 377
>PRK13938 phosphoheptose isomerase; Provisional
Probab=40.54 E-value=94 Score=30.99 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=18.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAA 347 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~ 347 (584)
.||.|+|.|..| -+|..+...|.
T Consensus 46 ~rI~i~G~G~S~-~~A~~fa~~L~ 68 (196)
T PRK13938 46 ARVFMCGNGGSA-ADAQHFAAELT 68 (196)
T ss_pred CEEEEEeCcHHH-HHHHHHHHHcC
Confidence 899999999987 66777666554
No 378
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=40.50 E-value=85 Score=34.89 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=28.1
Q ss_pred ccccccCChhhHHHHHhcCCCCCceEE-EEecCceeeccCCCCCCcccccc
Q 007939 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPI 198 (584)
Q Consensus 149 Glyis~~D~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~i 198 (584)
|-|....|-..+.++|+.. +++++ +++.|+.+=-+-+.+...+-|..
T Consensus 198 g~~~~~~d~~el~~lL~~~---Gl~v~~~~~~~~t~eei~~~~~A~lniv~ 245 (443)
T TIGR01862 198 GEYNIGGDAWVMRIYLEEM---GIQVVATFTGDGTYDEIRLMHKAKLNLVH 245 (443)
T ss_pred ccCcCcccHHHHHHHHHHc---CCeEEEEECCCCCHHHHHhcccCCEEEEE
Confidence 3343456667788888865 56665 45666555555556655555543
No 379
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=40.38 E-value=28 Score=39.77 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=16.5
Q ss_pred ceEEEeCcchhhHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (584)
.||+|+|||.+|+..|+.|.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e 22 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE 22 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHH
Confidence 699999999999999988865
No 380
>PRK08244 hypothetical protein; Provisional
Probab=40.37 E-value=24 Score=39.04 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
..|+|+|||.+|+..|-.|...
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~ 24 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA 24 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 5799999999999999887553
No 381
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=40.33 E-value=26 Score=40.57 Aligned_cols=34 Identities=35% Similarity=0.655 Sum_probs=27.0
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
..||+|+|+|.||+..|..+... |. ++.++|+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 48999999999999998887753 53 477888763
No 382
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=40.20 E-value=12 Score=39.96 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=51.1
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHHHh
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~evV 404 (584)
|+|+|+|..|-.+++.|.+.. .. .++.+.|++--=.+.- ..+...+..+.+-+ ..+..+|.+.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~----~~------~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG----PF------EEVTVADRNPEKAERLAEKLLGDRVEAVQVD-----VNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT----CE-------EEEEEESSHHHHHHHHT--TTTTEEEEE-------TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC----CC------CcEEEEECCHHHHHHHHhhccccceeEEEEe-----cCCHHHHHHHH
Confidence 789999999999998877642 11 2788888851000000 00011111111110 01234588999
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
+. .|++|-+++.. +.+.++++-.+ ...+.|=
T Consensus 66 ~~--~dvVin~~gp~--~~~~v~~~~i~--~g~~yvD 96 (386)
T PF03435_consen 66 RG--CDVVINCAGPF--FGEPVARACIE--AGVHYVD 96 (386)
T ss_dssp TT--SSEEEE-SSGG--GHHHHHHHHHH--HT-EEEE
T ss_pred hc--CCEEEECCccc--hhHHHHHHHHH--hCCCeec
Confidence 88 69999988643 88888887644 3445444
No 383
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=40.17 E-value=26 Score=37.33 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.2
Q ss_pred ceEEEeCcchhhHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (584)
.+|+|+|||.||+-.|-.|..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 689999999999999877654
No 384
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=40.11 E-value=36 Score=37.08 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=47.0
Q ss_pred CCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCc
Q 007939 315 GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (584)
Q Consensus 315 g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~ 394 (584)
|.++.+ ..+||+.+|+|.-|--+|= +.+ +.|+ .++-||+. .+-+-+.-.++.|.-++-
T Consensus 5 gt~~~~-~a~kvmLLGSGELGKEvaI----e~Q-RLG~-------eViAVDrY----~~APAmqVAhrs~Vi~Ml----- 62 (394)
T COG0027 5 GTPLRP-QATKVMLLGSGELGKEVAI----EAQ-RLGV-------EVIAVDRY----ANAPAMQVAHRSYVIDML----- 62 (394)
T ss_pred cCCCCC-CCeEEEEecCCccchHHHH----HHH-hcCC-------EEEEecCc----CCChhhhhhhheeeeecc-----
Confidence 444433 3389999999999865542 223 4565 58889985 322223222233333321
Q ss_pred ccCCCHHHHhcccCCcEEE
Q 007939 395 REGASLLEVVRKVKPHVLL 413 (584)
Q Consensus 395 ~~~~~L~evV~~vkptvLI 413 (584)
+..-|..+|+..|||.+|
T Consensus 63 -D~~al~avv~rekPd~IV 80 (394)
T COG0027 63 -DGDALRAVVEREKPDYIV 80 (394)
T ss_pred -CHHHHHHHHHhhCCCeee
Confidence 335699999999999998
No 385
>PRK08655 prephenate dehydrogenase; Provisional
Probab=39.96 E-value=83 Score=34.99 Aligned_cols=91 Identities=16% Similarity=0.284 Sum_probs=52.9
Q ss_pred eEEEeC-cchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 325 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 325 riv~~G-AGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
||.|+| .|..|..+|..+.. .|. +++++|++. +.. ...+.... .....++.++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~-----~G~-------~V~v~~r~~------~~~----~~~a~~~g----v~~~~~~~e~ 55 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKE-----KGF-------EVIVTGRDP------KKG----KEVAKELG----VEYANDNIDA 55 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHH-----CCC-------EEEEEECCh------HHH----HHHHHHcC----CeeccCHHHH
Confidence 789998 69999888888755 342 588888631 111 11222110 0012356777
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 007939 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (584)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSN 445 (584)
++. +|++| ++. |-..++++++.++....+.-+|+-+|+
T Consensus 56 ~~~--aDvVI-lav-p~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 56 AKD--ADIVI-ISV-PINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred hcc--CCEEE-Eec-CHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 766 67766 443 333457777777543445668887774
No 386
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=39.92 E-value=22 Score=36.94 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=23.4
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
|+|+|||.||+-.|-.|.. .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 7999999999999876664 354 466677663
No 387
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=39.81 E-value=15 Score=32.38 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=25.6
Q ss_pred CCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
|++.++|++|+|..|.-=+++|+++ | .++.++...-
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 3449999999999998777776654 2 3688887763
No 388
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=39.80 E-value=82 Score=35.32 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=22.6
Q ss_pred ccccccCChhhHHHHHhcCCCCCceEEEEec
Q 007939 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIVLTD 179 (584)
Q Consensus 149 Glyis~~D~g~i~~~l~nwp~~~v~viVVTD 179 (584)
|.|.+..|...+.++|..+ ++++.++.|
T Consensus 176 g~~~~~~D~~elk~lL~~~---Gl~v~~l~d 203 (461)
T TIGR02931 176 TGWVNPGDVKELKHLLEEM---DIEANVLFE 203 (461)
T ss_pred CCCCChhhHHHHHHHHHHc---CCceEEeec
Confidence 6677777888899999976 678888876
No 389
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=39.78 E-value=25 Score=39.80 Aligned_cols=36 Identities=6% Similarity=-0.159 Sum_probs=27.6
Q ss_pred eccCccccccchhhHHHHHHhCCcccCHHHHHHHHH
Q 007939 485 HVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (584)
Q Consensus 485 ~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~ 520 (584)
.||-.+|-..+|.+.=+..+...--++.+-+..+.+
T Consensus 188 ~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~ 223 (507)
T PRK08268 188 TPGFIVNRAARPYYTEALRVLEEGVADPATIDAILR 223 (507)
T ss_pred CCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 467789999999888888887766677776666643
No 390
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=39.75 E-value=25 Score=39.87 Aligned_cols=32 Identities=19% Similarity=0.609 Sum_probs=26.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.|+|+|+|..|+++|..+... |+ ++.++|+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 4699999999999999988753 55 58889875
No 391
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=39.71 E-value=2e+02 Score=32.52 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCc----------chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCC
Q 007939 307 LLGTVRAQGLSLTDFADQKIVVVGA----------GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (584)
Q Consensus 307 ll~Alr~~g~~l~dl~~~riv~~GA----------GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~ 376 (584)
+..||...|++++. .||+++|= -|=++.|.++|.+. | ..+.++|.+
T Consensus 309 ~~~al~~~~k~~~~---skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~-----g-------~~v~~~DP~--------- 364 (436)
T COG0677 309 VKEALNKAGKPLSG---SKILVLGLAYKGDVDDLRESPALDIIELLEEW-----G-------GEVLVYDPY--------- 364 (436)
T ss_pred HHHHHHHcCCCCcC---ceEEEEEeeecCCCcccccCchHHHHHHHHHh-----C-------CeEEEECCC---------
Confidence 55666688999999 99999996 35667777777664 3 357788874
Q ss_pred CChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEeecCCCCC---CCHHHHHHhhhcCCCCCeEEecCC
Q 007939 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV---FNEEVLKAMRESDSVKPAIFAMSN 445 (584)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~S~~~g~---Fteevv~~M~~~~~erPIIFaLSN 445 (584)
.++.+..+.... ....+++++++. .|++|=+.. ... ++-+-+.. ..++|+=-=|
T Consensus 365 v~~~~~~~~~~~------~~~~~~e~al~~--~D~vVi~tD-H~~fk~id~~~i~~------~~~vivDtrn 421 (436)
T COG0677 365 VKELPTREDGEG------VTLAILEEALKD--ADAVVIATD-HSEFKEIDYEAIGK------EAKVIVDTRN 421 (436)
T ss_pred CCcchhhhhccc------cchhhHHHHhcc--CCEEEEEec-cHHhhcCCHHHhcc------CCcEEEECcc
Confidence 332221121110 012569999998 888885554 444 44444443 3677774443
No 392
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=39.69 E-value=39 Score=36.09 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=32.1
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
..+.-+=-+|.-+.+.......... .+++|+|+|+.|+..+.+.. ..|. ++|+++|.
T Consensus 145 ~~aal~epla~~~~~~a~~~~~~~~---~~V~V~GaGpIGLla~~~a~-----~~Ga------~~Viv~d~ 201 (350)
T COG1063 145 EAAALTEPLATAYHGHAERAAVRPG---GTVVVVGAGPIGLLAIALAK-----LLGA------SVVIVVDR 201 (350)
T ss_pred hhhhhcChhhhhhhhhhhccCCCCC---CEEEEECCCHHHHHHHHHHH-----HcCC------ceEEEeCC
Confidence 3343333344444442333333334 49999999999976632222 3455 57998876
No 393
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=39.61 E-value=22 Score=38.91 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAA 346 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~ 346 (584)
.+++++|.|++|+|+|..+..-+
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl 62 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKL 62 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhc
Confidence 89999999999999999987743
No 394
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=39.56 E-value=25 Score=38.27 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.+||+|+|.||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999998887653 4 369999975
No 395
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.43 E-value=24 Score=39.44 Aligned_cols=32 Identities=34% Similarity=0.587 Sum_probs=26.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.|||+|+|.+|+++|..+.. .|+ ++.+++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 579999999999999998865 365 48889876
No 396
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=39.42 E-value=24 Score=38.58 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=24.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.|+|+|||.||...|-.+.. .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 468999999999999977754 465 36666654
No 397
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=39.22 E-value=70 Score=33.85 Aligned_cols=107 Identities=20% Similarity=0.121 Sum_probs=55.0
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.++.|+|+|.-|.--++.+... .++ ++|+++|+. .. ........+.+..-+ .....+++|+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~--~~~~~~~~~~~~~~~---v~~~~~~~~a 189 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PE--RAEAFAARLRDLGVP---VVAVDSAEEA 189 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HH--HHHHHHHHHHCCCTC---EEEESSHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hh--HHHHHHHhhcccccc---ceeccchhhh
Confidence 5899999999887777766653 233 689988874 11 122222222220111 1235789999
Q ss_pred hcccCCcEEEeecCCCC---CCCHHHHHHhhhcCCCCCeEEecCCCC-CccCCCHHHHh
Q 007939 404 VRKVKPHVLLGLSGVGG---VFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTAADAF 458 (584)
Q Consensus 404 V~~vkptvLIG~S~~~g---~Fteevv~~M~~~~~erPIIFaLSNPt-~~aE~tpeda~ 458 (584)
|+. .||++-+.+... .|+.++++. .-.|-++.--+ .+.|+.++-..
T Consensus 190 v~~--aDii~taT~s~~~~P~~~~~~l~~-------g~hi~~iGs~~~~~~El~~~~~~ 239 (313)
T PF02423_consen 190 VRG--ADIIVTATPSTTPAPVFDAEWLKP-------GTHINAIGSYTPGMRELDDELLK 239 (313)
T ss_dssp HTT--SSEEEE----SSEEESB-GGGS-T-------T-EEEE-S-SSTTBESB-HHHHH
T ss_pred ccc--CCEEEEccCCCCCCccccHHHcCC-------CcEEEEecCCCCchhhcCHHHhc
Confidence 999 999997765433 588777764 34666666433 24588775433
No 398
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=39.19 E-value=1.4e+02 Score=31.67 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=27.9
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 399 ~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
++.+.+.. .|+++=.|. ...|.-.++++|+ +..|+|-
T Consensus 262 ~~~~~l~~--ad~~v~pS~-~E~~g~~~~EAma---~G~PVI~ 298 (398)
T cd03796 262 RVRDVLVQ--GHIFLNTSL-TEAFCIAIVEAAS---CGLLVVS 298 (398)
T ss_pred HHHHHHHh--CCEEEeCCh-hhccCHHHHHHHH---cCCCEEE
Confidence 46666766 788886664 5678889999995 6888865
No 399
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.18 E-value=26 Score=38.95 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=20.7
Q ss_pred CceEEEeCcchhhHHHHHHHHHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~ 345 (584)
.+||+|+|.|..|.++|++|...
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~ 30 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAH 30 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHc
Confidence 38999999999999999998764
No 400
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=39.05 E-value=58 Score=33.76 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=25.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
.||.|+|+|..|-.+|.-|+. .|.- ...+|+.+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 589999999999888887754 3431 1246888886
No 401
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=39.03 E-value=2.1e+02 Score=31.45 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=36.4
Q ss_pred ccccccCChhhHHHHHhcCCCCCceEEEEecCceeeccCCCCCCcccccchhhhhh
Q 007939 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVY 204 (584)
Q Consensus 149 Glyis~~D~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~iGKl~LY 204 (584)
|.| +..|...|.++|+.+ +++++++.-|+.+=-|=..|....-|.++...-+
T Consensus 166 G~~-~~~d~~ei~~lL~~~---Gl~~~~~l~~~~~~el~~~~~A~~~i~~~~~~~~ 217 (416)
T cd01980 166 GEM-FPADPVAIGSVLERM---GLAAVPVVPTREWRELYAAGDAAAVAALHPFYTA 217 (416)
T ss_pred ccC-CCCCHHHHHHHHHHc---CCceeeEeCCCCHHHHhhcccCcEEEEeChhHHH
Confidence 533 355777899999876 6777765556777677777777777777776553
No 402
>PTZ00188 adrenodoxin reductase; Provisional
Probab=39.00 E-value=34 Score=39.13 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=26.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.||+|+|||.||+-.|..++.. .|. ++-++|+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~----~g~-------~VtlfEk~ 72 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH----ERV-------KVDIFEKL 72 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----cCC-------eEEEEecC
Confidence 7999999999999999977652 243 47788875
No 403
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=39.00 E-value=29 Score=38.59 Aligned_cols=32 Identities=31% Similarity=0.685 Sum_probs=25.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 799999999999998887754 353 47777765
No 404
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=38.98 E-value=27 Score=40.41 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=27.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
..|+|+|||-+|+.+|-.|.. .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 479999999999999988865 353 599999874
No 405
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=38.88 E-value=28 Score=39.01 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=28.7
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
||+++|||..|+-+++.|+.+++ -.|- ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv-~~g~-----~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGV-GTGE-----SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CcCC-----CCeEEEECCC
Confidence 68999999999999999988644 1111 1689999987
No 406
>PRK06185 hypothetical protein; Provisional
Probab=38.63 E-value=26 Score=37.26 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=25.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
..|+|+|||.+|+..|-.|.. .|+ ++.++|++.
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 679999999999998876643 465 477777753
No 407
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=38.55 E-value=26 Score=37.51 Aligned_cols=32 Identities=13% Similarity=0.386 Sum_probs=24.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 579999999999999876643 465 46677764
No 408
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=38.54 E-value=63 Score=33.92 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=30.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
++++|+|+|.+|+-+|..|..... +.|.+ .+|.+++...+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~-~~g~~-----~~V~li~~~~~ 185 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLP-KRGLR-----GQVTLIAGASL 185 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHH-hcCCC-----ceEEEEeCCcc
Confidence 699999999999999999988665 45542 57888854333
No 409
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=38.49 E-value=43 Score=29.62 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=50.5
Q ss_pred CcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCC
Q 007939 330 GAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKP 409 (584)
Q Consensus 330 GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkp 409 (584)
|.|..|.+++++|...-. .-++ +=..++|+++++... +....... ....++.+.++..++
T Consensus 1 G~G~VG~~l~~~l~~~~~-~~~~------~v~~v~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~~ 60 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQE-RIDL------EVVGVADRSMLISKD-------WAASFPDE------AFTTDLEELIDDPDI 60 (117)
T ss_dssp --SHHHHHHHHHHHHTHH-HCEE------EEEEEEESSEEEETT-------HHHHHTHS------CEESSHHHHHTHTT-
T ss_pred CCCHHHHHHHHHHHhCcc-cCCE------EEEEEEECCchhhhh-------hhhhcccc------cccCCHHHHhcCcCC
Confidence 789999999999987532 1022 236778887444433 11111111 124679999998889
Q ss_pred cEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 410 HVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 410 tvLIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
|++|=+++ +...++-+.+.+. +...+|-
T Consensus 61 dvvVE~t~-~~~~~~~~~~~L~---~G~~VVt 88 (117)
T PF03447_consen 61 DVVVECTS-SEAVAEYYEKALE---RGKHVVT 88 (117)
T ss_dssp SEEEE-SS-CHHHHHHHHHHHH---TTCEEEE
T ss_pred CEEEECCC-chHHHHHHHHHHH---CCCeEEE
Confidence 99999954 5555555555553 3455554
No 410
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.38 E-value=28 Score=35.63 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=25.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988553 43 58888853
No 411
>PRK07538 hypothetical protein; Provisional
Probab=38.34 E-value=27 Score=37.53 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=16.4
Q ss_pred eEEEeCcchhhHHHHHHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~ 344 (584)
+|+|+|||.||+..|-.|..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999888876644
No 412
>PRK09897 hypothetical protein; Provisional
Probab=38.29 E-value=31 Score=39.54 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=27.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|+|+|+|.+|+.+|..|+.. +- .-+|.++|+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~-----~~-----~l~V~lfEp~ 35 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ-----QT-----PLSISIFEQA 35 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc-----CC-----CCcEEEEecC
Confidence 3799999999999999999762 11 1369999985
No 413
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=38.21 E-value=27 Score=38.02 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=24.8
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
.++|+|+|.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999877653 4 36889998
No 414
>PRK07589 ornithine cyclodeaminase; Validated
Probab=38.14 E-value=1.6e+02 Score=31.98 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=62.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.++.|+|+|.-+.--++.++... .+ ++|+++|+. .. ....+...+.+..-++ ....+++|+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr----~i------~~V~v~~r~----~~--~a~~~~~~~~~~~~~v---~~~~~~~~a 190 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL----GI------EEIRLYDID----PA--ATAKLARNLAGPGLRI---VACRSVAEA 190 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC----Cc------eEEEEEeCC----HH--HHHHHHHHHHhcCCcE---EEeCCHHHH
Confidence 68999999988776666665531 22 678888763 11 1111111221110011 124679999
Q ss_pred hcccCCcEEEeecCCC---CCCCHHHHHHhhhcCCCCCeEEec-CCCCCccCCCHHHH
Q 007939 404 VRKVKPHVLLGLSGVG---GVFNEEVLKAMRESDSVKPAIFAM-SNPTMNAECTAADA 457 (584)
Q Consensus 404 V~~vkptvLIG~S~~~---g~Fteevv~~M~~~~~erPIIFaL-SNPt~~aE~tpeda 457 (584)
|+. .||++-+++.. -.|..++++.= + -|-++ |+-..+.|+.++-.
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkpG----~---hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEPG----M---HINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCCC----c---EEEecCCCCCCcccCCHHHH
Confidence 988 99999876532 45888888641 1 35555 44334679998753
No 415
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=38.07 E-value=33 Score=35.47 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=24.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
--++|+|||+||+..|..|... |+ ++.+++++=-
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~ 51 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLS 51 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS
T ss_pred CCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCC
Confidence 5699999999999999877664 55 5888998633
No 416
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=38.06 E-value=26 Score=37.01 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=25.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
..|+|+|||.+|+-.|-.|.. .|+ ++.++|+.-
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 579999999999998866543 464 577888763
No 417
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=38.00 E-value=30 Score=31.55 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=24.7
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
|+|+|+|+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999998888877663 2 3688888876
No 418
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=37.93 E-value=68 Score=33.89 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=63.0
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
+++.|+|+|.=|..-++.++.. ..+ ++|.++|+. .+ ....+...+.+.. ..+ .....+++|+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~--~a~~f~~~~~~~~-~~~-v~~~~~~~ea 179 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD--HARAFAERFSKEF-GVD-IRPVDNAEAA 179 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH--HHHHHHHHHHHhc-CCc-EEEeCCHHHH
Confidence 7999999999887776666553 123 678888773 11 1222222222210 000 1124689999
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCeEEecC-CCCCccCCCHHHH
Q 007939 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMS-NPTMNAECTAADA 457 (584)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Fteevv~~M~~~~~erPIIFaLS-NPt~~aE~tpeda 457 (584)
++. .||++-+.+. ...|..++++. .--|-++- +--.+.|+.++-.
T Consensus 180 v~~--aDIV~taT~s~~P~~~~~~l~p-------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 180 LRD--ADTITSITNSDTPIFNRKYLGD-------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred Hhc--CCEEEEecCCCCcEecHHHcCC-------CceEEecCCCCCCcccCCHHHH
Confidence 988 9999976543 35678887763 22355543 3224579998743
No 419
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.85 E-value=28 Score=37.77 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=19.7
Q ss_pred CceEEEeCcchhhHHHHHHHHHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~ 345 (584)
..+++|+|+|..|.++|+.+.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~ 27 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKL 27 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC
Confidence 48999999999999998887764
No 420
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=37.80 E-value=2.1e+02 Score=25.69 Aligned_cols=61 Identities=20% Similarity=0.128 Sum_probs=34.9
Q ss_pred CcEEEeecCCCCCCCHHHHHHhhhc-CCCCCeEEecCCCCCccCCCHHHHhcccCCcEEEEeC-CCCCcccc
Q 007939 409 PHVLLGLSGVGGVFNEEVLKAMRES-DSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASG-SPFENVDL 478 (584)
Q Consensus 409 ptvLIG~S~~~g~Fteevv~~M~~~-~~erPIIFaLSNPt~~aE~tpeda~~wT~Grai~AsG-SPf~pv~~ 478 (584)
-|++|++|..|. |+|+++.+... ...-|+|-==+||.+ . .-+.+|--..+.+| +++.+|.+
T Consensus 48 ~dl~I~iS~SG~--t~~~~~~~~~a~~~g~~vi~iT~~~~s--~-----la~~ad~~l~~~~~~~~~~~~~~ 110 (120)
T cd05710 48 KSVVILASHSGN--TKETVAAAKFAKEKGATVIGLTDDEDS--P-----LAKLADYVIVYGFEIDAVEEKYL 110 (120)
T ss_pred CcEEEEEeCCCC--ChHHHHHHHHHHHcCCeEEEEECCCCC--c-----HHHhCCEEEEccCCcCccchHHH
Confidence 588999996543 68888888331 233465554444554 1 12234444555666 66665543
No 421
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=37.76 E-value=28 Score=38.16 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=24.5
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----G-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 79999999999988777653 4 368899975
No 422
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=37.76 E-value=29 Score=36.95 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=25.1
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+|+|+|||-+|+.+|..+.. .|. ++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g~-------~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AGH-------EVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 68999999999999988754 243 58888885
No 423
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=37.66 E-value=2.2e+02 Score=27.05 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=44.1
Q ss_pred hhhhhHhHHHHHHHHHHHCCCeeeEecc-CCCChHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCC-
Q 007939 245 GEEYLSIVDEFMEAVHARWPKAIVQFED-FQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFA- 322 (584)
Q Consensus 245 g~~Y~~~vdefv~av~~~~P~~lIqfED-f~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~- 322 (584)
.+....+.+++.+.+..--|+ .+-.|+ |-+.|.-..+.- .-+-..++.++...|.++.+.+
T Consensus 41 ~~rl~~I~~~l~~~i~~~~Pd-~vaiE~~~~~~n~~s~~~l----------------~~~~Gvi~~~~~~~~i~v~e~~P 103 (154)
T cd00529 41 PSRLKTIYDGLNEVIDQFQPD-VVAIERVFFAKNPDSALKL----------------GQARGALILALANRNLPVFEYTP 103 (154)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-EEEEEEhhcccChHHHHHH----------------HHHHHHHHHHHHHcCCCEEEEcc
Confidence 455666666666666544487 445588 434453222210 1134456667777788765544
Q ss_pred -CceEEEeCcchhhH
Q 007939 323 -DQKIVVVGAGSAGL 336 (584)
Q Consensus 323 -~~riv~~GAGsAg~ 336 (584)
+.|-.+.|.|.|.-
T Consensus 104 ~~vKk~~tG~G~A~K 118 (154)
T cd00529 104 NQVKKAVTGYGKADK 118 (154)
T ss_pred CeeEEEEECCCCCCH
Confidence 35778899998875
No 424
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=37.44 E-value=1.1e+02 Score=34.55 Aligned_cols=138 Identities=13% Similarity=0.125 Sum_probs=63.5
Q ss_pred HHHHHHHHC--CCeeeEeccCCCChHHHHHHHHhhccCccccCcchhHHHH----HHHHHHHHHHhCCCCCCCCCceEEE
Q 007939 255 FMEAVHARW--PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVA----LAGLLGTVRAQGLSLTDFADQKIVV 328 (584)
Q Consensus 255 fv~av~~~~--P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~----LAgll~Alr~~g~~l~dl~~~riv~ 328 (584)
..+..+++| |-..+.| ++-.+.-+.|++.-+ .|++++...+--. -+-+...+......|+. .|+++
T Consensus 269 ~A~~Le~~fGiP~~~~~~--~Gi~~T~~~Lr~ia~---~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~G---Krv~i 340 (466)
T TIGR01282 269 ISRHMEEKYGIPWMEYNF--FGPTKIAESLRKIAE---FFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEG---KTVML 340 (466)
T ss_pred HHHHHHHHhCCceEeCCC--CCHHHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEE
Confidence 334445555 4433333 555555555555433 2344433222111 11133333334566666 99999
Q ss_pred eCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccC
Q 007939 329 VGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVK 408 (584)
Q Consensus 329 ~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vk 408 (584)
+|.|+=...++.+ +. +.|+. +.+.-.+ ....++.....+......--++ ..+...|++.++..|
T Consensus 341 ~~g~~~~~~~~~~----l~-ELGme-------vv~~g~~---~~~~~~~~~~~~~~~~~~~i~~-~~d~~el~~~i~~~~ 404 (466)
T TIGR01282 341 YVGGLRPRHVIGA----FE-DLGME-------VIGTGYE---FAHNDDYERTTKYMKDGTLIYD-DVTHYEFEEFVEKLK 404 (466)
T ss_pred ECCCCcHHHHHHH----HH-HCCCE-------EEEEeee---cCCHHHHHHHHHhcCCCeEEee-CCCHHHHHHHHHHhC
Confidence 9887655566554 33 56774 2211110 0001111111111110000000 012345888999999
Q ss_pred CcEEEeec
Q 007939 409 PHVLLGLS 416 (584)
Q Consensus 409 ptvLIG~S 416 (584)
||++||-|
T Consensus 405 pDl~ig~~ 412 (466)
T TIGR01282 405 PDLVGSGI 412 (466)
T ss_pred CCEEEecC
Confidence 99999876
No 425
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=37.39 E-value=81 Score=36.96 Aligned_cols=94 Identities=22% Similarity=0.258 Sum_probs=50.8
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.||.|+|+|..|..+|..+... |.. .+++.+|++ .+ .+.. ++..... .....++.++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~~-----~~V~~~d~~----~~--~~~~-----a~~~g~~--~~~~~~~~~~ 60 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GLA-----REVVAVDRR----AK--SLEL-----AVSLGVI--DRGEEDLAEA 60 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC-----CEEEEEECC----hh--HHHH-----HHHCCCC--CcccCCHHHH
Confidence 6899999999999998887653 431 358888874 11 1111 1110000 0012346666
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007939 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (584)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLS 444 (584)
++. +|++| ++.. -...+++++.|+....+.-||.-++
T Consensus 61 ~~~--aDvVi-lavp-~~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 61 VSG--ADVIV-LAVP-VLAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred hcC--CCEEE-ECCC-HHHHHHHHHHHHHhcCCCcEEEEcC
Confidence 664 66665 4432 2345777777754223344554444
No 426
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=37.37 E-value=86 Score=32.11 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
.++.|+|+|.-|-|+|.++..+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~a 23 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKA 23 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhC
Confidence 3789999999999999999886
No 427
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=37.26 E-value=65 Score=31.08 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+..+.++...+.-... ++++++|+|+.|..++++.. ..| .+++.+++.
T Consensus 120 ~~a~~~l~~~~~~~~~---~~vli~g~~~~G~~~~~~a~-----~~g-------~~v~~~~~~ 167 (271)
T cd05188 120 ATAYHALRRAGVLKPG---DTVLVLGAGGVGLLAAQLAK-----AAG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHHHhccCCCCC---CEEEEECCCHHHHHHHHHHH-----HcC-------CeEEEEcCC
Confidence 3334455555543445 79999999885544443332 234 257777664
No 428
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=37.25 E-value=28 Score=36.45 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=25.3
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
.|+|+|||-+|+.+|-.|.+. |. ++.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G~-------~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----GL-------SVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeCCC
Confidence 489999999999999887652 43 588888753
No 429
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.24 E-value=65 Score=29.30 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=43.0
Q ss_pred CCCCcccccchhhhhhhhhcCCCCCCceeEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHHCCCeee
Q 007939 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIV 268 (584)
Q Consensus 189 lG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~Ll~DP~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~lI 268 (584)
.|..|-...--+..+-......+|+. |+|-+||| |.++ +.+-++|.+-+++|++.++..+|++.|
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~N------D~~~------~~~~~~~~~~~~~~i~~i~~~~p~~~i 82 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTN------DLVL------NRDPDTAPDRLRALIDQMRAANPDVKI 82 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCc------cccc------CCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 33444444444444433444556543 46888996 4433 256789999999999999999998744
Q ss_pred E
Q 007939 269 Q 269 (584)
Q Consensus 269 q 269 (584)
-
T Consensus 83 i 83 (157)
T cd01833 83 I 83 (157)
T ss_pred E
Confidence 4
No 430
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=37.05 E-value=29 Score=38.06 Aligned_cols=33 Identities=42% Similarity=0.745 Sum_probs=22.1
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi 370 (584)
|||+|+|.||+.-|-... +.|+ ++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AA-----r~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAA-----RAGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHH-----HTTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHH-----HCCC-------EEEEEECCccC
Confidence 799999999877765443 3565 68999998865
No 431
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=36.93 E-value=1.7e+02 Score=32.28 Aligned_cols=110 Identities=11% Similarity=0.186 Sum_probs=70.0
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccC--C---C--CCChhhhcccc--ccCCcCC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--R---K--NLDPAAAPFAK--DPGDFMG 393 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~--r---~--~l~~~k~~fA~--~~~~~~~ 393 (584)
..||.++|+|.=|..||.++-.--. +.+.-+.+=++|.++.. ..+ + + +-+++..+|-. +.++ +
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~---~~~~f~~~Vrmwv~ee~---i~~~~~~L~eiIN~~heN~KYlpg~~lP~--N 92 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVK---EFPIFDPQVRMWVFEEE---INGEAEKLTEIINSRHENVKYLPGIKLPE--N 92 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhh---hccccCceeeEEEeccc---cCChhHHHHHHhccccccccccCCccCCC--C
Confidence 4799999999999999999987533 34455566689988864 222 1 1 11112223322 1111 1
Q ss_pred cccCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007939 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (584)
Q Consensus 394 ~~~~~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLS 444 (584)
..-..+|.|+++. +|+||=+ .|--|+..+.+.+.....++..-..|+
T Consensus 93 vvAv~dl~ea~~d--ADilvf~--vPhQf~~~ic~~l~g~vk~~~~aISL~ 139 (372)
T KOG2711|consen 93 VVAVPDLVEAAKD--ADILVFV--VPHQFIPRICEQLKGYVKPGATAISLI 139 (372)
T ss_pred eEecchHHHHhcc--CCEEEEe--CChhhHHHHHHHHhcccCCCCeEEEee
Confidence 1224789999998 9999843 477799999999976445555544444
No 432
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=36.93 E-value=1e+02 Score=33.53 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=26.0
Q ss_pred ceEEEeC-cchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~G-AGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|.|+| .|..|-++|..+..+ |. .++++|++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 6899999 999999999888763 43 48888874
No 433
>PRK14852 hypothetical protein; Provisional
Probab=36.82 E-value=26 Score=42.96 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=31.8
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
++|+. .||+|+|+|..|.-||..|+.+ |+ ++|.++|-+=
T Consensus 328 ~kL~~---srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D~ 366 (989)
T PRK14852 328 RRLLR---SRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFDA 366 (989)
T ss_pred HHHhc---CcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCE
Confidence 45667 9999999998888888888776 44 6899999873
No 434
>PF12227 DUF3603: Protein of unknown function (DUF3603); InterPro: IPR020909 This entry is represented by Bacteriophage phiNIT1, Orf that is a member of UPF0736. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry describes proteins of unknown function.
Probab=36.80 E-value=16 Score=37.03 Aligned_cols=26 Identities=42% Similarity=0.732 Sum_probs=17.5
Q ss_pred EEEEecCceeeccCCCCCCcccccchhhh
Q 007939 174 MIVLTDGSRILGLGDLGVQGIGIPIGKLD 202 (584)
Q Consensus 174 viVVTDG~rILGLGDlG~~Gm~I~iGKl~ 202 (584)
++|||||.|||-.--. |-.|||-|+-
T Consensus 51 ~fi~TDg~~IlavDt~---gy~ipiRKSR 76 (214)
T PF12227_consen 51 CFIVTDGERILAVDTI---GYKIPIRKSR 76 (214)
T ss_pred eEEEecCCceEEEEec---CCCceeeecc
Confidence 7999999999964333 3345555543
No 435
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=36.74 E-value=30 Score=38.07 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=25.6
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999998887765 34 369999975
No 436
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=36.64 E-value=37 Score=36.25 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=28.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
-.|+|+|||.+|+.+|-.|... .|. +++.++|++.+
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 5799999999999999887762 243 36889998643
No 437
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.58 E-value=33 Score=37.46 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=19.4
Q ss_pred CceEEEeCcchhhHHHHHHHHHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~ 345 (584)
..+|+|+|.|.+|+++|+.+.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~ 27 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKN 27 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC
Confidence 38999999999999998877653
No 438
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=36.54 E-value=2e+02 Score=29.81 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=29.1
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 399 ~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
++.+.++. .|++|-.|. ...|.--++++|+ +..|||-
T Consensus 265 ~~~~~~~~--adi~v~pS~-~Eg~~~~~lEAma---~G~Pvv~ 301 (374)
T TIGR03088 265 DVPALMQA--LDLFVLPSL-AEGISNTILEAMA---SGLPVIA 301 (374)
T ss_pred CHHHHHHh--cCEEEeccc-cccCchHHHHHHH---cCCCEEE
Confidence 35666766 788997775 5678999999995 6899987
No 439
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=36.49 E-value=45 Score=36.52 Aligned_cols=106 Identities=18% Similarity=0.290 Sum_probs=64.2
Q ss_pred ChhhhhHhHHHHHH--HHHHHCCCeeeEeccCCCChHHHHHHHHhhccCccccCcchhHH-HHHHHHHHHHHHhCCCCCC
Q 007939 244 EGEEYLSIVDEFME--AVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG-VALAGLLGTVRAQGLSLTD 320 (584)
Q Consensus 244 ~g~~Y~~~vdefv~--av~~~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaa-V~LAgll~Alr~~g~~l~d 320 (584)
+|+-..+++++|++ ..++..|+.. =-|+|+..-..++|+++.. =..|++-|-. .|...+..+++....+ .
T Consensus 213 ~G~v~~~ll~~ll~~pyf~~~pPKSt-GrE~F~~~~l~~~l~~~~~----~~~D~~aTlt~~TA~sI~~~i~~~~~~--~ 285 (364)
T PF03702_consen 213 SGKVNEELLDRLLSHPYFKRPPPKST-GREDFGLEWLQQILDKFSL----SPEDILATLTEFTAQSIADAIRRFPPQ--P 285 (364)
T ss_dssp CS---HHHHHHHHTSHHHHS-SS-----TTTSSHHHHHHHCTTSTT-----HHHHHHHHHHHHHHHHHHHHHHH-TT---
T ss_pred cCCCCHHHHHHHhcCccccCCCCCcC-CccccCHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHHHHHhcCCC--C
Confidence 45566678888886 4455557642 2389977665566655544 2678888854 4556666788877655 3
Q ss_pred CCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcc
Q 007939 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (584)
.++++.|.|+=+.-+-++|.+.+- + -+|...|.-|+
T Consensus 286 ---~~v~v~GGGa~N~~L~~~L~~~l~---~-------~~v~~~~~~gi 321 (364)
T PF03702_consen 286 ---DEVYVCGGGARNPFLMERLQERLP---G-------IPVKTTDELGI 321 (364)
T ss_dssp ---EEEEEESGGGG-HHHHHHHHHH-T---T-------CEEEEGGGGTS
T ss_pred ---ceEEEECCCcCCHHHHHHHHhhCC---C-------CEEecHHHcCC
Confidence 589999999999888777776543 1 25655666554
No 440
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=36.44 E-value=26 Score=37.09 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=17.9
Q ss_pred eEEEeCcchhhHHHHHHHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~ 345 (584)
.|+|+|||.||+..|-.|..+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~ 23 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQA 23 (403)
T ss_pred CEEEECccHHHHHHHHHHhcC
Confidence 589999999999999877653
No 441
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=36.28 E-value=29 Score=41.07 Aligned_cols=107 Identities=16% Similarity=0.080 Sum_probs=58.0
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc---c-----CCCHHHHhcccCCcEEEEeCCCC
Q 007939 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN---A-----ECTAADAFKHAGENIVFASGSPF 473 (584)
Q Consensus 402 evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~~---a-----E~tpeda~~wT~Grai~AsGSPf 473 (584)
++=+..+|+++|..+|. ..=-.++-..+ .+-+|=|.+=.-||.+. . +-|.+++++..- . |+..-=.
T Consensus 413 ~l~~~~~~~~ilasnTS-~l~i~~ia~~~--~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~--~-~~~~lgk 486 (714)
T TIGR02437 413 EVEQHVREDAILASNTS-TISISLLAKAL--KRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVV--A-YASKMGK 486 (714)
T ss_pred HHHhhCCCCcEEEECCC-CCCHHHHHhhc--CCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHH--H-HHHHcCC
Confidence 33355789999988763 33333444433 13445588888999752 2 334444333210 0 0111112
Q ss_pred CccccCCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHH
Q 007939 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAA 519 (584)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA 519 (584)
.||..+ ..||-.=|-..+|-+--+..+...- ++.+.+-.|.
T Consensus 487 ~pv~v~----d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~ 527 (714)
T TIGR02437 487 TPIVVN----DCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVM 527 (714)
T ss_pred EEEEeC----CcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 333331 4678888888888776666555533 6766666654
No 442
>PRK05868 hypothetical protein; Validated
Probab=36.25 E-value=31 Score=36.87 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.3
Q ss_pred ceEEEeCcchhhHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (584)
.+|+|+|||.+|+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 479999999999988877654
No 443
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=36.06 E-value=32 Score=36.96 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=18.7
Q ss_pred eEEEeCcchhhHHHHHHHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~ 345 (584)
||+|+|||-||+..|..|..+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~ 22 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH 22 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 799999999999999888764
No 444
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=35.99 E-value=1.3e+02 Score=27.85 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHhcccCCcEEEeecCCCCCCCHHHHHHh
Q 007939 400 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 430 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~~~g~Fteevv~~M 430 (584)
+.+..+.-+-|+||+.|+.+.. +-+|+++
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~s--~~vi~a~ 123 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGNS--PNVIEAA 123 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS-S--HHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCCCC--HHHHHHH
Confidence 4445334457999999987665 8888877
No 445
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=35.76 E-value=1.9e+02 Score=31.29 Aligned_cols=134 Identities=17% Similarity=0.204 Sum_probs=78.8
Q ss_pred HHHCCCeeeEeccCCCChHHHHHHHHhhccCcccc-CcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHH
Q 007939 260 HARWPKAIVQFEDFQMKWAFETLERYRKRFCMFND-DIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGV 338 (584)
Q Consensus 260 ~~~~P~~lIqfEDf~~~nAf~lL~ryr~~~~~FND-DiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~Gi 338 (584)
...|.++++ +-.+... +.+.+.+| ..+|+.|- |-.---.=+|+=++.-.+..|++++. .+|.++|-+.- ++
T Consensus 98 ls~y~D~iv-~R~~~~~-~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~g---l~ia~vGD~~~--~v 169 (334)
T PRK01713 98 LGRMYDAIE-YRGFKQS-IVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSE---ISYVYIGDARN--NM 169 (334)
T ss_pred HHHhCCEEE-EEcCchH-HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCC---cEEEEECCCcc--CH
Confidence 345555422 2344333 33333344 35899994 32334455677777766777767888 99999998753 47
Q ss_pred HHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHhcccCCcEEEee
Q 007939 339 LKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL 415 (584)
Q Consensus 339 A~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~vkptvLIG~ 415 (584)
++-++.++. +-|+ +|.++-.+++.-.+ ++-+.-+.+++.... ......++.++++. .||+.-.
T Consensus 170 ~~Sl~~~~~-~~g~-------~v~~~~P~~~~p~~--~~~~~~~~~~~~~g~--~~~~~~d~~~a~~~--aDvVyt~ 232 (334)
T PRK01713 170 GNSLLLIGA-KLGM-------DVRICAPKALLPEA--SLVEMCEKFAKESGA--RITVTDDIDKAVKG--VDFVHTD 232 (334)
T ss_pred HHHHHHHHH-HcCC-------EEEEECCchhcCCH--HHHHHHHHHHHHcCC--eEEEEcCHHHHhCC--CCEEEEc
Confidence 887777766 5676 58888888773321 111111233332110 01124679999998 9999864
No 446
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=35.75 E-value=31 Score=38.83 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=18.2
Q ss_pred ceEEEeCcchhhHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (584)
.+|+|+|||.+|+..|-.|..
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHh
Confidence 589999999999999977654
No 447
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=35.72 E-value=33 Score=37.38 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=25.6
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 5699999999999998877653 4 468889983
No 448
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=35.71 E-value=26 Score=39.78 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=31.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcE-----EEEecCccccc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF-----FLLDKDGLITK 372 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i-----~lvDs~GLi~~ 372 (584)
+||+|+|||-||++.|..|.++.. -++.=||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccCceeeeeecCCCCeee
Confidence 589999999999999999988632 13444666553 12556666553
No 449
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.65 E-value=35 Score=37.49 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=20.5
Q ss_pred CCCceEEEeCcchhhHHHHHHHHHH
Q 007939 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~li~~~ 345 (584)
|...||.|+|.|-.|+++|++|...
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~ 31 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAG 31 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHC
Confidence 4448999999999999988887653
No 450
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=35.59 E-value=48 Score=35.57 Aligned_cols=134 Identities=19% Similarity=0.285 Sum_probs=72.0
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccC-CCCCChhhhccccccCCcCCcccCCCHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLL 401 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~-r~~l~~~k~~fA~~~~~~~~~~~~~~L~ 401 (584)
..||.++|+|..|+.+|-.|+.- |++ +++.++|-.==-.++ .-+|. |-.+|-+..+-.. .++..
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MDLq-H~s~f~~~~~V~~----~~Dy~ 84 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMDLQ-HGSAFLSTPNVVA----SKDYS 84 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhhhc-cccccccCCceEe----cCccc
Confidence 38999999999999999888763 565 578899964111111 11333 2234554322110 11111
Q ss_pred HHhcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--CcE
Q 007939 402 EVVRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (584)
Q Consensus 402 evV~~vkptvLIG~S~~~g~--------------Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~--Gra 465 (584)
. -. .-++.|=+.+.... .=+.+|....+ +.+.-|+.-.|||.. +.---+++.|. -.-
T Consensus 85 ~-sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~-ySpd~~llvvSNPVD---ilTYv~wKLSgfP~nR 157 (332)
T KOG1495|consen 85 V-SA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVK-YSPDCILLVVSNPVD---ILTYVTWKLSGFPKNR 157 (332)
T ss_pred c-cC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-cCCCeEEEEecCchH---HHHHHHHHHcCCcccc
Confidence 1 11 13343323222211 11456666643 889999999999983 43333444321 123
Q ss_pred EEEeCCCCCcccc
Q 007939 466 VFASGSPFENVDL 478 (584)
Q Consensus 466 i~AsGSPf~pv~~ 478 (584)
+|.||.-.+...+
T Consensus 158 ViGsGcnLDsaRF 170 (332)
T KOG1495|consen 158 VIGSGCNLDSARF 170 (332)
T ss_pred eeccCcCccHHHH
Confidence 4577766666543
No 451
>PRK10262 thioredoxin reductase; Provisional
Probab=35.51 E-value=33 Score=35.50 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=18.6
Q ss_pred ceEEEeCcchhhHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (584)
.+|+|+|+|.||+..|..+..
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 789999999999999887765
No 452
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=35.50 E-value=32 Score=37.95 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=25.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.+||+|+|+||+..|..+... | +++.++|+.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 4699999999999988877553 4 479999975
No 453
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=35.42 E-value=48 Score=36.37 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhcccc
Q 007939 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK 386 (584)
Q Consensus 307 ll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~ 386 (584)
+..++......+.. .|++++|-+.-..++++.|.+. |+. +..+-+. +.+++......+.+..
T Consensus 261 ~~~~l~~~~~~l~G---krv~i~gd~~~~~~l~~~L~el-----Gm~-------~v~~~t~---~~~~~~~~~~~~~l~~ 322 (407)
T TIGR01279 261 AWRALEPHTQLLRG---KKIFFFGDNLLELPLARFLKRC-----GME-------VVECGTP---YIHRRFHAAELALLEG 322 (407)
T ss_pred HHHHHHHHHHhcCC---CEEEEECCchHHHHHHHHHHHC-----CCE-------EEEecCC---CCChHHHHHHHhhcCC
Confidence 34445555555666 9999999999999999888873 552 2212111 0111111111111111
Q ss_pred ccCCcCCcccCCCHHHHhcccCCcEEEeec
Q 007939 387 DPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (584)
Q Consensus 387 ~~~~~~~~~~~~~L~evV~~vkptvLIG~S 416 (584)
+ ..+....+...|++.++..+||.+||-|
T Consensus 323 ~-~~v~~~~d~~~l~~~i~~~~pDllig~~ 351 (407)
T TIGR01279 323 G-VRIVEQPDFHRQLQRIRATRPDLVVTGL 351 (407)
T ss_pred C-CeEEeCCCHHHHHHHHHhcCCCEEecCc
Confidence 1 1110001234467889999999999876
No 454
>PRK14694 putative mercuric reductase; Provisional
Probab=35.24 E-value=36 Score=37.50 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=26.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 5699999999999998887663 4 368899975
No 455
>PRK06392 homoserine dehydrogenase; Provisional
Probab=35.22 E-value=1.7e+02 Score=31.62 Aligned_cols=180 Identities=18% Similarity=0.226 Sum_probs=89.0
Q ss_pred eEEEeCcchhhHHHHHHHHHHHH-HHcCCChhhhcCcEEEEecCcccccCCCCCChhh-hccccccCCcCCcc-cCCCHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAA-RMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFAKDPGDFMGLR-EGASLL 401 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~-~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k-~~fA~~~~~~~~~~-~~~~L~ 401 (584)
||.++|.|..|-+++++|.+.-. ++.|+.. +=+.+.|++|.+.+.+. ++..+ ..+.+.. .+.... ...++.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l----~VVaVsds~g~l~~~~G-ldl~~l~~~~~~g-~l~~~~~~~~~~~ 75 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGI----SVVSVSDSKLSYYNERG-LDIGKIISYKEKG-RLEEIDYEKIKFD 75 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCe----EEEEEEECCCcccCCcC-CChHHHHHHHhcC-ccccCCCCcCCHH
Confidence 79999999999999999877311 1223321 22456799998887652 33211 1111110 000000 112577
Q ss_pred HHhcccCCcEEEeecCC--CCC-CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHH--HHhcccCCcEEE-----EeCC
Q 007939 402 EVVRKVKPHVLLGLSGV--GGV-FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA--DAFKHAGENIVF-----ASGS 471 (584)
Q Consensus 402 evV~~vkptvLIG~S~~--~g~-Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpe--da~~wT~Grai~-----AsGS 471 (584)
++++ .+|||+|=++.. .|. -..-+.+++. +...+|. +|=.+.|+-..+ ++-+. .|+.++ +.|-
T Consensus 76 ~ll~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~---~G~hVVT--aNKgalA~~~~eL~~lA~~-~g~~~~~eatV~~g~ 148 (326)
T PRK06392 76 EIFE-IKPDVIVDVTPASKDGIREKNLYINAFE---HGIDVVT--ANKSGLANHWHDIMDSASK-NRRIIRYEATVAGGV 148 (326)
T ss_pred HHhc-CCCCEEEECCCCCCcCchHHHHHHHHHH---CCCEEEc--CCHHHHHhhHHHHHHHHHH-cCCeEEEeeeeeecc
Confidence 7665 589999988742 121 1122234442 2344443 443333332222 12222 344443 5566
Q ss_pred CCCccccCCCeeeeccCccccccchhhHHHH---HHhCC-cccCHHHHHHHHHHHh
Q 007939 472 PFENVDLGNGKIGHVNQANNMYLFPGIGLGT---LLSGA-RFITDGMLQQAAECLA 523 (584)
Q Consensus 472 Pf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~---~~~~a-~~Itd~m~~aAA~alA 523 (584)
|.=..- +... -+|+..-+=||.-|. ++++. ...+-+-.+.-|+.+-
T Consensus 149 Pii~~~----~~~~--~g~~i~~i~GilnGT~nyIl~~m~~g~~f~~al~eAq~lG 198 (326)
T PRK06392 149 PLFSLR----DYST--LPSRIKNFRGIVSSTINYVIRQEANGRGFLDVVKIAQKMG 198 (326)
T ss_pred chhhhh----hhhc--ccCCEEEEEEEEeChHHHHHhhccCCCCHHHHHHHHHHcC
Confidence 643321 1111 235667777777776 45554 3444444454455444
No 456
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=35.15 E-value=40 Score=37.32 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=55.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChh---hhccccccCCcCCcccCCC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPA---AAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~---k~~fA~~~~~~~~~~~~~~ 399 (584)
.+||++|||-.|-.+|..|++- |- .+|++.|+. .+. ..+... +...+.-+ ..+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD-----~~d~~a 61 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVD-----AADVDA 61 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEec-----ccChHH
Confidence 4899999999999999988773 21 479988884 110 011111 11222211 123467
Q ss_pred HHHHhcccCCcEEEeecCCCCCCCHHHHHHhhh
Q 007939 400 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRE 432 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~ 432 (584)
|.++|++ .++.|-+- |+-++..++++-.+
T Consensus 62 l~~li~~--~d~VIn~~--p~~~~~~i~ka~i~ 90 (389)
T COG1748 62 LVALIKD--FDLVINAA--PPFVDLTILKACIK 90 (389)
T ss_pred HHHHHhc--CCEEEEeC--CchhhHHHHHHHHH
Confidence 9999999 59998776 67888888877644
No 457
>PRK13984 putative oxidoreductase; Provisional
Probab=35.11 E-value=35 Score=38.98 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=26.0
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+++|+|+|.||+..|..+... |. ++.++|+.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~-----G~-------~v~vie~~ 315 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATM-----GY-------EVTVYESL 315 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 7899999999999999888653 54 47778765
No 458
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.01 E-value=47 Score=36.26 Aligned_cols=48 Identities=29% Similarity=0.424 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 304 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
|+--+-|+|..+.+..+ |+|++|||..| +..++++-. -|. ++|.++|-
T Consensus 155 LsV~~HAcr~~~vk~Gs----~vLV~GAGPIG--l~t~l~Aka---~GA------~~VVi~d~ 202 (354)
T KOG0024|consen 155 LSVGVHACRRAGVKKGS----KVLVLGAGPIG--LLTGLVAKA---MGA------SDVVITDL 202 (354)
T ss_pred hhhhhhhhhhcCcccCC----eEEEECCcHHH--HHHHHHHHH---cCC------CcEEEeec
Confidence 66677899999999987 99999999985 455555532 355 47887774
No 459
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=34.87 E-value=29 Score=36.62 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=25.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..|+|+|||.||+..|-.+.. .|+ ++.++|+.
T Consensus 6 ~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 579999999999999876643 454 57888875
No 460
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=34.85 E-value=30 Score=36.99 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=51.1
Q ss_pred hHhHHHHHHHHHHHCCCeee-EeccCC---CChHHHHHHHHhhccCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCc
Q 007939 249 LSIVDEFMEAVHARWPKAIV-QFEDFQ---MKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQ 324 (584)
Q Consensus 249 ~~~vdefv~av~~~~P~~lI-qfEDf~---~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~ 324 (584)
+.|...|-+.+++++-.-.| .++|+. .+--..-++||..++..+.- +-+.. ..++|++ .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ry~r~l~l~~~-~~~~~-------------~Q~kL~~---s 77 (318)
T TIGR03603 15 ENFVSTFKEIVKKLVKGITISDEDAYENDLETLTKFNLITIIDNLTLKPM-LIVED-------------YQKHLKK---S 77 (318)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHhhhhccCHHHHHHHHHHhcCccc-cCcHH-------------HHHHHhh---C
Confidence 34555566666666666677 665652 12224457899888655331 00000 1245666 8
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+|+ +|.-|.-+|..|+. |+ ++|.++|.+
T Consensus 78 ~Vl---~GGLGs~va~~La~------GV------g~L~ivD~D 105 (318)
T TIGR03603 78 KVL---LGKFGANIAYNLCN------NV------GALFISDKT 105 (318)
T ss_pred eee---cccchHHHHHHHhC------CC------CEEEEEcCC
Confidence 888 55566555555544 44 689999987
No 461
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=34.82 E-value=36 Score=36.54 Aligned_cols=33 Identities=24% Similarity=0.537 Sum_probs=24.6
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
.+|+|+|||.+|+..|-.|.. .|++ +.++|+.-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~~-------v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK-----AGID-------NVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH-----CCCC-------EEEEECCC
Confidence 579999999999998866544 5663 66676653
No 462
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.55 E-value=51 Score=28.64 Aligned_cols=30 Identities=23% Similarity=0.544 Sum_probs=23.5
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 326 iv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
|||+|.|..|..+++.|.+. + .++.++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECC
Confidence 78999999999988888662 1 479999986
No 463
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=34.50 E-value=95 Score=33.58 Aligned_cols=184 Identities=22% Similarity=0.271 Sum_probs=100.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
-|+.++|| || ||.+=|--.|+..-.+| .+-|+|-.+. .+- .+|++.... ....+-.+...|++
T Consensus 29 ~KVAvlGA--aG-GIGQPLSLLlK~np~Vs------~LaLYDi~~~--~GVaaDlSHI~T~-----s~V~g~~g~~~L~~ 92 (345)
T KOG1494|consen 29 LKVAVLGA--AG-GIGQPLSLLLKLNPLVS------ELALYDIANT--PGVAADLSHINTN-----SSVVGFTGADGLEN 92 (345)
T ss_pred ceEEEEec--CC-ccCccHHHHHhcCcccc------eeeeeecccC--CcccccccccCCC-----CceeccCChhHHHH
Confidence 79999998 44 77776666666344554 4777886521 111 123321100 00111112357999
Q ss_pred HhcccCCcEEE---eecCCCCC-----C--CHHHHHHhhh---cCCCCCeEEecCCCCCccCCCHHHHhccc---CCcEE
Q 007939 403 VVRKVKPHVLL---GLSGVGGV-----F--NEEVLKAMRE---SDSVKPAIFAMSNPTMNAECTAADAFKHA---GENIV 466 (584)
Q Consensus 403 vV~~vkptvLI---G~S~~~g~-----F--teevv~~M~~---~~~erPIIFaLSNPt~~aE~tpeda~~wT---~Grai 466 (584)
++++ .|+.| |+-..||. | +--||+.++. ++|++-+|.-.|||....=--+.+.++.- |-+-|
T Consensus 93 al~~--advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkkl 170 (345)
T KOG1494|consen 93 ALKG--ADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKL 170 (345)
T ss_pred HhcC--CCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccce
Confidence 9999 89877 55555553 2 3345555532 48999999999999863222223344321 22334
Q ss_pred EE-----------------eCCCCCcccc-----CCCeeeec--cCccccccchhhHHHHHH--------------hCCc
Q 007939 467 FA-----------------SGSPFENVDL-----GNGKIGHV--NQANNMYLFPGIGLGTLL--------------SGAR 508 (584)
Q Consensus 467 ~A-----------------sGSPf~pv~~-----~~G~~~~p--~Q~NN~~iFPGiglG~~~--------------~~a~ 508 (584)
|. ..+|-..|.. ..|.|+.| +||+-.+=|.===+=.+. +++-
T Consensus 171 fGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaG 250 (345)
T KOG1494|consen 171 FGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAG 250 (345)
T ss_pred eceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCC
Confidence 42 2334221221 13777754 899888777642222221 2334
Q ss_pred ccCHHHHHHHHHHHhcc
Q 007939 509 FITDGMLQQAAECLASY 525 (584)
Q Consensus 509 ~Itd~m~~aAA~alA~~ 525 (584)
.-|-.|-+|+|+-.-++
T Consensus 251 SATLSMAyAga~fa~s~ 267 (345)
T KOG1494|consen 251 SATLSMAYAGAKFADSL 267 (345)
T ss_pred chhhhHHHHHHHHHHHH
Confidence 45778888888754433
No 464
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=34.24 E-value=88 Score=27.18 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=46.6
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV 404 (584)
||.|+|+|..|.....-+... ..+. +=..++|++. +.-+.+++... .+...++.|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~~----------~~~~~~~~~~~----~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPDP----------ERAEAFAEKYG----IPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSSH----------HHHHHHHHHTT----SEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCCH----------HHHHHHHHHhc----ccchhHHHHHH
Confidence 899999999976654444332 0121 2234566531 11112232211 12457899999
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhh
Q 007939 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRE 432 (584)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~M~~ 432 (584)
+.-++|+++ +++ +.....++++...+
T Consensus 59 ~~~~~D~V~-I~t-p~~~h~~~~~~~l~ 84 (120)
T PF01408_consen 59 ADEDVDAVI-IAT-PPSSHAEIAKKALE 84 (120)
T ss_dssp HHTTESEEE-EES-SGGGHHHHHHHHHH
T ss_pred HhhcCCEEE-Eec-CCcchHHHHHHHHH
Confidence 988899887 554 34556666665543
No 465
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=34.19 E-value=97 Score=32.73 Aligned_cols=124 Identities=17% Similarity=0.251 Sum_probs=73.4
Q ss_pred EeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCCHHHHhcc
Q 007939 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRK 406 (584)
Q Consensus 328 ~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~ 406 (584)
|+|||..|..+|-+|+. .|+- ..|.|+|.+-=..++- -+|.+....+.++. .. ..+-.+.+++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l~-----~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~-~i-----~~~~~~~~~d 64 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGIA-----DEIVLIDINKDKAEGEAMDLQHAASFLPTPK-KI-----RSGDYSDCKD 64 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCChhhHHHHHHHHhhcccCCCe-EE-----ecCCHHHHCC
Confidence 58999999999987764 3553 5799999842111111 13333332221111 11 1223466777
Q ss_pred cCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccCC--cEEEEeC
Q 007939 407 VKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE--NIVFASG 470 (584)
Q Consensus 407 vkptvLIG~S~~~---g~-----------Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~G--rai~AsG 470 (584)
.|++|=+.+.+ |- .=+++++.+.+ ++..-+|+-.|||.. ....-+++++.= +-+|.+|
T Consensus 65 --aDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~-~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~g 138 (299)
T TIGR01771 65 --ADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVK-SGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSG 138 (299)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEecc
Confidence 89988555543 31 11356677754 789999999999984 666666666521 2377776
Q ss_pred CCC
Q 007939 471 SPF 473 (584)
Q Consensus 471 SPf 473 (584)
.-.
T Consensus 139 t~L 141 (299)
T TIGR01771 139 TVL 141 (299)
T ss_pred chH
Confidence 444
No 466
>PRK06545 prephenate dehydrogenase; Validated
Probab=34.13 E-value=1.3e+02 Score=32.41 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.9
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
.||.|+|.|..|..+|..|...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999988653
No 467
>PRK06199 ornithine cyclodeaminase; Validated
Probab=34.09 E-value=1.2e+02 Score=33.30 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=51.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev 403 (584)
.++.++|+|.-+....+.++... ..+ ++|+++|+. . +....+.+.+.+.-..+.......+.+|+
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~---~~i------~~V~v~~r~----~--~~a~~f~~~~~~~~~~~~~v~~~~s~~ea 220 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVC---PGI------DTIKIKGRG----Q--KSLDSFATWVAETYPQITNVEVVDSIEEV 220 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc---CCc------cEEEEECCC----H--HHHHHHHHHHHHhcCCCceEEEeCCHHHH
Confidence 68999999988777766665532 112 578888873 1 11222222222110000001124789999
Q ss_pred hcccCCcEEEeecCC-------CCCCCHHHHHH
Q 007939 404 VRKVKPHVLLGLSGV-------GGVFNEEVLKA 429 (584)
Q Consensus 404 V~~vkptvLIG~S~~-------~g~Fteevv~~ 429 (584)
|+. .||++-+.+. ...|..++++.
T Consensus 221 v~~--ADIVvtaT~s~~~~~s~~Pv~~~~~lkp 251 (379)
T PRK06199 221 VRG--SDIVTYCNSGETGDPSTYPYVKREWVKP 251 (379)
T ss_pred HcC--CCEEEEccCCCCCCCCcCcEecHHHcCC
Confidence 988 9999965431 16678877763
No 468
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=33.94 E-value=34 Score=42.19 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=27.8
Q ss_pred CCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+..||+|+|+|.||+..|..|... |. ++.++|..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-----Gh-------~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-----GH-------NVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEccc
Confidence 348999999999999999988753 43 58889874
No 469
>PRK06126 hypothetical protein; Provisional
Probab=33.85 E-value=38 Score=37.94 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=24.4
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~ 39 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERK 39 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 689999999999999877654 455 36666654
No 470
>PLN02985 squalene monooxygenase
Probab=33.84 E-value=39 Score=38.26 Aligned_cols=32 Identities=22% Similarity=0.579 Sum_probs=24.3
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-+|+|+|||.||+..|-.|.. .|. ++.++|+.
T Consensus 44 ~DViIVGAG~aGlalA~aLa~-----~G~-------~V~vlEr~ 75 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAK-----DGR-------RVHVIERD 75 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEECc
Confidence 589999999999998877654 453 46677764
No 471
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=33.77 E-value=41 Score=35.08 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=27.7
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccc
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi 370 (584)
..+|+|+|+|-+|+.+|-.|... |. ++.++|++..-
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 37899999999999888777653 43 68888876553
No 472
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=33.75 E-value=32 Score=42.47 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=32.7
Q ss_pred CCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
++|++ .+|+|+|+|.-|.=||+.|+.+.+ ++|.++|.+-
T Consensus 20 ~kL~~---s~VLIiG~gGLG~EiaKnL~laGV-----------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAK---SNVLISGMGGLGLEIAKNLVLAGV-----------KSVTLHDTEK 58 (1008)
T ss_pred HHHhh---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCe
Confidence 45566 999999999999999999988755 6899999873
No 473
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=33.27 E-value=1.4e+02 Score=29.87 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=41.7
Q ss_pred eEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChh----hhccccccCCcCCcccCCC
Q 007939 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA----AAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 325 riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~----k~~fA~~~~~~~~~~~~~~ 399 (584)
+|+|.|| |..|-.+++.|+.. |- ..+++.+|+...- .+.+.+... ...+..- + ..+..+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--D---l~~~~~ 64 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTYA-GNLENLADLEDNPRYRFVKG--D---IGDREL 64 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCcc-hhhhhhhhhccCCCcEEEEc--C---CcCHHH
Confidence 5888887 77777776666542 21 1357777752110 001111111 0111110 0 113356
Q ss_pred HHHHhcccCCcEEEeecCC
Q 007939 400 LLEVVRKVKPHVLLGLSGV 418 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~~ 418 (584)
+.++++..+||++|=+++.
T Consensus 65 ~~~~~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 65 VSRLFTEHQPDAVVHFAAE 83 (317)
T ss_pred HHHHHhhcCCCEEEEcccc
Confidence 8888988889999988864
No 474
>PRK07208 hypothetical protein; Provisional
Probab=33.22 E-value=39 Score=36.98 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=19.8
Q ss_pred CceEEEeCcchhhHHHHHHHHHH
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~ 345 (584)
..+|+|+|||-+|+..|..|...
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~ 26 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKR 26 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHC
Confidence 36899999999999999888663
No 475
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=33.03 E-value=1.1e+02 Score=31.81 Aligned_cols=103 Identities=18% Similarity=0.270 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHH--HcCCChhhhcCcEEEEecCcccccCCC
Q 007939 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAAR--MAGNNDAFARNKFFLLDKDGLITKERK 375 (584)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~--~~Gls~eeA~~~i~lvDs~GLi~~~r~ 375 (584)
|.|--+.-|+--+.|+.|.+- ..+|++|=|.-.=|- +.++++. ...|+ +=|.++|++++=.++..
T Consensus 122 GqGLsvavGmAlg~kl~~~~~-----~VyvilGDGEl~EG~---~WEAam~Aah~~L~-----NLiaivD~N~~QldG~t 188 (243)
T COG3959 122 GQGLSVAVGMALGAKLKGSPY-----RVYVILGDGELDEGQ---VWEAAMTAAHYKLD-----NLIAIVDRNKLQLDGET 188 (243)
T ss_pred cccchHHHHHHHHHhhcCCCc-----eEEEEecCccccccc---HHHHHHHHHHhccC-----cEEEEEecCCcccCCch
Confidence 344444556777788888755 679999999876653 2232221 23443 34789999998766541
Q ss_pred -------CCChhhhccccccCCcCCcccCCCHHHHhccc-----CCcEEEe
Q 007939 376 -------NLDPAAAPFAKDPGDFMGLREGASLLEVVRKV-----KPHVLLG 414 (584)
Q Consensus 376 -------~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~v-----kptvLIG 414 (584)
.|.+-.+.|--+.-+.+| .+..++.+++++. ||+++|-
T Consensus 189 ~~i~~~~pL~~k~eAFGw~V~evdG-~d~~~i~~a~~~~~~~~~rP~~IIa 238 (243)
T COG3959 189 EEIMPKEPLADKWEAFGWEVIEVDG-HDIEEIVEALEKAKGSKGRPTVIIA 238 (243)
T ss_pred hhccCcchhHHHHHhcCceEEEEcC-cCHHHHHHHHHhhhccCCCCeEEEE
Confidence 222222333222111111 1233455555544 8999884
No 476
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=32.96 E-value=1.7e+02 Score=29.37 Aligned_cols=80 Identities=26% Similarity=0.276 Sum_probs=45.5
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHHh
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV 404 (584)
||.|+|.|+.+ -+|+-+...|. +-|. ++++++...... ..+. -+
T Consensus 2 rI~i~G~G~S~-~~a~~~~~~l~-~~g~-------~~~~~~~~~~~~-----------~~~~----------------~~ 45 (268)
T TIGR00393 2 KLVIVGIGKSG-LIGKKIVATFA-STGT-------PSFFLHPTEAMH-----------GDLG----------------MV 45 (268)
T ss_pred cEEEEecChHH-HHHHHHHHHHH-hcCC-------ceEEeCHhHHhh-----------cccC----------------CC
Confidence 78999999776 47777777666 3453 344433211100 0000 01
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhc-CCCCCeEEecCC
Q 007939 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRES-DSVKPAIFAMSN 445 (584)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~M~~~-~~erPIIFaLSN 445 (584)
-+-|++|++|-. | -|+++++.|... ...-||| ++++
T Consensus 46 --~~~d~~i~iS~s-G-~t~~~~~~~~~a~~~g~~ii-~iT~ 82 (268)
T TIGR00393 46 --EPNDVVLMISYS-G-ESLELLNLIPHLKRLSHKII-AFTG 82 (268)
T ss_pred --CCCCEEEEEeCC-C-CCHHHHHHHHHHHHcCCcEE-EEEC
Confidence 236899999964 3 679999988432 2334554 4554
No 477
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=32.96 E-value=38 Score=41.63 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=26.9
Q ss_pred CceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
..||+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~ 462 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEAL 462 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecC
Confidence 37999999999999999888764 43 57778875
No 478
>PLN02366 spermidine synthase
Probab=32.93 E-value=66 Score=34.32 Aligned_cols=158 Identities=13% Similarity=0.204 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHCCCe-eeEeccCCCChHHHHHHHHhhccCccccCcchhHHH--HHHHHHHHHHHhCCCCCCCCCceEEE
Q 007939 252 VDEFMEAVHARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGV--ALAGLLGTVRAQGLSLTDFADQKIVV 328 (584)
Q Consensus 252 vdefv~av~~~~P~~-lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV--~LAgll~Alr~~g~~l~dl~~~riv~ 328 (584)
|++.+...+..|.+. +++.+||+. ..+.|..+|-|..- .---.++.+...-.+ .. .||++
T Consensus 35 v~~~l~~~~s~yQ~i~v~~~~~~g~-------------~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~-~p---krVLi 97 (308)
T PLN02366 35 VEKVLFQGKSDFQDVLVFESATYGK-------------VLVLDGVIQLTERDECAYQEMITHLPLCSIP-NP---KKVLV 97 (308)
T ss_pred EeeEEEeccCCCeeEEEEEcCCCce-------------EEEECCEeeecCccHHHHHHHHHHHHHhhCC-CC---CeEEE
Confidence 345555556666554 666666542 33445555554332 112222222222111 24 79999
Q ss_pred eCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCccccc-CCCCCChhhhccccccCCcCCcccCCCHHHHhccc
Q 007939 329 VGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKV 407 (584)
Q Consensus 329 ~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~-~r~~l~~~k~~fA~~~~~~~~~~~~~~L~evV~~v 407 (584)
+|.|..+ +++.++.. -+. +++.+||-+.-+.+ .|+.++.....+..+.-.+ ...+-.+.++..
T Consensus 98 IGgG~G~--~~rellk~----~~v------~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~v----i~~Da~~~l~~~ 161 (308)
T PLN02366 98 VGGGDGG--VLREIARH----SSV------EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNL----HIGDGVEFLKNA 161 (308)
T ss_pred EcCCccH--HHHHHHhC----CCC------CeEEEEECCHHHHHHHHHhhhhhccccCCCceEE----EEChHHHHHhhc
Confidence 9999864 44444332 122 57999998876554 2333332211121111000 113333334332
Q ss_pred ---CCcEEEeecCC-----CCCCCHHHHHHhhhcCCCCCeEEe
Q 007939 408 ---KPHVLLGLSGV-----GGVFNEEVLKAMRESDSVKPAIFA 442 (584)
Q Consensus 408 ---kptvLIG~S~~-----~g~Fteevv~~M~~~~~erPIIFa 442 (584)
+-|++|-=+.. ...||++..+.+.+..++.=++..
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 46888864433 246888999988766666655543
No 479
>PRK07190 hypothetical protein; Provisional
Probab=32.92 E-value=38 Score=37.94 Aligned_cols=33 Identities=27% Similarity=0.542 Sum_probs=24.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
..|+|+|||.+|+-.|-.+. +.|+ ++.++|+.-
T Consensus 6 ~dVlIVGAGPaGL~lA~~La-----r~Gi-------~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQ-----LCGL-------NTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHH-----HcCC-------CEEEEeCCC
Confidence 57999999999998776543 3465 367777753
No 480
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=32.85 E-value=1.1e+02 Score=37.07 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=64.2
Q ss_pred CceEEEeCcchhhHHHHHHHHHH---HHHHcCCChhhhcCcEEEEecCcccccCCCCCCh--hhhccccccCCcCCcccC
Q 007939 323 DQKIVVVGAGSAGLGVLKMAVQA---AARMAGNNDAFARNKFFLLDKDGLITKERKNLDP--AAAPFAKDPGDFMGLREG 397 (584)
Q Consensus 323 ~~riv~~GAGsAg~GiA~li~~~---~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~--~k~~fA~~~~~~~~~~~~ 397 (584)
..+|.++|-|..|.|++++|.+- +.++.|+.. +=.-+.||++.+.+.+. ++. ....|...... .+.
T Consensus 458 ~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~g-i~~~~~~~~~~~~~~~----~~~ 528 (810)
T PRK09466 458 RIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDG-LDASRALAFFDDEAVE----WDE 528 (810)
T ss_pred eEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccC-CCHHHHHhhHHhhcCC----ccH
Confidence 37899999999999999999874 222335432 11346799988777653 332 11222221111 123
Q ss_pred CCHHHHhcccCCc--EEEeecCCCCCCCHHHHHHhhhcCCCCCeEEe
Q 007939 398 ASLLEVVRKVKPH--VLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (584)
Q Consensus 398 ~~L~evV~~vkpt--vLIG~S~~~g~Fteevv~~M~~~~~erPIIFa 442 (584)
..+.|.+....++ |+|=+++ +.-....+.+++. +...+|-|
T Consensus 529 ~~~~e~i~~~~~~~~vvVd~t~-~~~~~~~~~~aL~---~G~~VVta 571 (810)
T PRK09466 529 ESLFLWLRAHPYDELVVLDVTA-SEQLALQYPDFAS---HGFHVISA 571 (810)
T ss_pred HHHHHHHhhcCCCCcEEEECCC-ChHHHHHHHHHHH---cCCEEEcC
Confidence 4567777766665 8888885 3334456667773 35666653
No 481
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=32.59 E-value=22 Score=38.41 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.7
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
.+|+|+|||-||+..|..|.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~ 24 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE 24 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc
Confidence 6899999999999999888764
No 482
>PRK13748 putative mercuric reductase; Provisional
Probab=32.29 E-value=36 Score=38.24 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=26.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~-----G-------~~v~lie~~ 130 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQ-----G-------ARVTLIERG 130 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 5799999999999888877663 4 368999975
No 483
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=32.22 E-value=2.5e+02 Score=28.84 Aligned_cols=88 Identities=22% Similarity=0.254 Sum_probs=52.5
Q ss_pred ceEEEeCc-chhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHH
Q 007939 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (584)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (584)
.||.++|+ |..|-.+++.+... .++ +=..++|++. ++ .... ..+ . .....++.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~--~~~~-~~~-----~---i~~~~dl~~ 56 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SP--LVGQ-GAL-----G---VAITDDLEA 56 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cc--cccc-CCC-----C---ccccCCHHH
Confidence 48999998 99988887666441 222 2355677652 11 1000 001 0 112467888
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEe
Q 007939 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (584)
Q Consensus 403 vV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFa 442 (584)
+++ ++|++|=+|. |... .++++...+ ...|+|..
T Consensus 57 ll~--~~DvVid~t~-p~~~-~~~~~~al~--~G~~vvig 90 (257)
T PRK00048 57 VLA--DADVLIDFTT-PEAT-LENLEFALE--HGKPLVIG 90 (257)
T ss_pred hcc--CCCEEEECCC-HHHH-HHHHHHHHH--cCCCEEEE
Confidence 886 5999998884 4444 666666543 56888865
No 484
>PRK10015 oxidoreductase; Provisional
Probab=32.22 E-value=36 Score=37.35 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=25.0
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
-.++|+|||.||+..|-.+.. .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 469999999999988877644 465 477777653
No 485
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=32.19 E-value=36 Score=40.48 Aligned_cols=107 Identities=14% Similarity=0.021 Sum_probs=56.5
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---cc-----CCCHHHHhcccCCcEEEEeCCCC
Q 007939 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NA-----ECTAADAFKHAGENIVFASGSPF 473 (584)
Q Consensus 402 evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLSNPt~---~a-----E~tpeda~~wT~Grai~AsGSPf 473 (584)
++=+.++|+++|..+|. ..=-.++-+.+ . .-+|=|.+=.-||.. +. +-|.++++++.- .+ +.--=.
T Consensus 435 ~l~~~~~~~~ilasNTS-sl~i~~la~~~-~-~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~--~~-~~~lgk 508 (737)
T TIGR02441 435 EVEAVVPPHCIIASNTS-ALPIKDIAAVS-S-RPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAV--AV-GLKQGK 508 (737)
T ss_pred HHHhhCCCCcEEEEcCC-CCCHHHHHhhc-C-CccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHH--HH-HHHCCC
Confidence 33355789999987763 33223333333 2 445668888889864 22 335455444221 01 110001
Q ss_pred CccccCCCeeeeccCccccccchhhHHHHHHhCCcccCHHHHHHHH
Q 007939 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAA 519 (584)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA 519 (584)
.||.. ...||-.=|-..+|-+.-+..+..- -++.+-+-.|.
T Consensus 509 ~pv~v----~d~pGFi~NRi~~~~~~ea~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 509 VVIVV----KDGPGFYTTRCLGPMLAEVIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred eEEEE----CCcCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 22322 1457777787778777666555543 34666666653
No 486
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=32.13 E-value=50 Score=34.20 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=30.1
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHH--HcCCChhhhcCcEEEEecCcc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAAR--MAGNNDAFARNKFFLLDKDGL 369 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~--~~Gls~eeA~~~i~lvDs~GL 369 (584)
.||+++|+|.-|.-+++.|+...+. .-|... . -+|.++|.+=+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~--g-~~i~lvD~D~V 56 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPG--G-LAVTVYDDDTV 56 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCC--C-CEEEEECCCEE
Confidence 8999999999999999999886320 112110 0 17999998733
No 487
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=32.12 E-value=39 Score=36.92 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=26.5
Q ss_pred ceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
-.++|+|||.||+..|..+.+. | .++.++|++.
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 5699999999999988877553 4 4799999863
No 488
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=32.10 E-value=66 Score=39.84 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=45.7
Q ss_pred ceEEEeCcchhhHH-------HHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCccc
Q 007939 324 QKIVVVGAGSAGLG-------VLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (584)
Q Consensus 324 ~riv~~GAGsAg~G-------iA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (584)
+||+|+|+|...+| -+.+++.++. +.|. +++++|++---......+.+ ..|-.+. .
T Consensus 8 ~kvlviG~G~~~igq~~E~d~sg~q~~~aL~-e~G~-------~vi~v~~np~~~~~d~~~ad--~~y~ep~-------~ 70 (1068)
T PRK12815 8 QKILVIGSGPIVIGQAAEFDYSGTQACLALK-EEGY-------QVVLVNPNPATIMTDPAPAD--TVYFEPL-------T 70 (1068)
T ss_pred CEEEEECCCcchhcchhhhhhHHHHHHHHHH-HcCC-------EEEEEeCCcchhhcCcccCC--eeEECCC-------C
Confidence 69999999998776 3557788887 6787 68999976321100000111 0111110 1
Q ss_pred CCCHHHHhcccCCcEEEe
Q 007939 397 GASLLEVVRKVKPHVLLG 414 (584)
Q Consensus 397 ~~~L~evV~~vkptvLIG 414 (584)
...|.++++..+||++|=
T Consensus 71 ~e~l~~ii~~e~~D~Iip 88 (1068)
T PRK12815 71 VEFVKRIIAREKPDALLA 88 (1068)
T ss_pred HHHHHHHHHHhCcCEEEE
Confidence 245788888899999884
No 489
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=32.06 E-value=45 Score=36.54 Aligned_cols=31 Identities=23% Similarity=0.518 Sum_probs=24.2
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
.++|+|||-+|.=+|+ +++ +.| +++.+||++
T Consensus 3 d~lIVGaGlsG~V~A~-~a~----~~g-------k~VLIvekR 33 (374)
T COG0562 3 DYLIVGAGLSGAVIAE-VAA----QLG-------KRVLIVEKR 33 (374)
T ss_pred cEEEECCchhHHHHHH-HHH----HcC-------CEEEEEecc
Confidence 5899999999999999 333 234 688888875
No 490
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=32.05 E-value=84 Score=32.35 Aligned_cols=48 Identities=31% Similarity=0.493 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEec
Q 007939 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (584)
Q Consensus 304 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (584)
++..+.++...+... . ++++|.|+|+.|...+.+.. ..|. ++++.+|+
T Consensus 149 ~~ta~~~l~~~~~~~-g---~~vlV~G~G~vG~~~~~~ak-----~~G~------~~vi~~~~ 196 (339)
T cd08239 149 IGTAYHALRRVGVSG-R---DTVLVVGAGPVGLGALMLAR-----ALGA------EDVIGVDP 196 (339)
T ss_pred HHHHHHHHHhcCCCC-C---CEEEEECCCHHHHHHHHHHH-----HcCC------CEEEEECC
Confidence 334455555544333 4 79999998766554433322 3453 34777765
No 491
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=32.03 E-value=1.3e+02 Score=33.87 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=78.1
Q ss_pred ceEEEeCc-chhhHHHHHHHHHHHHH--HcCCChhhhcCcEEEEecCcccccCC-CCCChhhhccccccCCcCCcccCCC
Q 007939 324 QKIVVVGA-GSAGLGVLKMAVQAAAR--MAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (584)
Q Consensus 324 ~riv~~GA-GsAg~GiA~li~~~~~~--~~Gls~eeA~~~i~lvDs~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (584)
.||.|+|| |..|..+|-.|+..-+- .+|+. .+|+++|.+-=..++- -+|.+...++-+. . .-..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~-----~eLvliD~~~~~a~G~amDL~daa~~~~~~---v---~i~~~ 169 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIA-----LKLLGSERSKQALEGVAMELEDSLYPLLRE---V---SIGID 169 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcc-----cEEEEEcCCcchhHHHHHHHHHhhhhhcCc---e---EEecC
Confidence 69999999 99999999887764110 11332 4788898742222111 1343333233221 0 00123
Q ss_pred HHHHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCccCCCHHHHhcccC--C
Q 007939 400 LLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--E 463 (584)
Q Consensus 400 L~evV~~vkptvLIG~S~~~---g~-----------Fteevv~~M~~~~~erPIIFaLSNPt~~aE~tpeda~~wT~--G 463 (584)
-.|..++ .|++|=+.+.+ |- .=+++.+.+.+..+..-||+-.|||- .....-+++++. -
T Consensus 170 ~ye~~kd--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~ 244 (444)
T PLN00112 170 PYEVFQD--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIP 244 (444)
T ss_pred CHHHhCc--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCC
Confidence 4566777 88887555543 31 11355566632147899999999997 355666666652 2
Q ss_pred cEEEEeCCCCCcc
Q 007939 464 NIVFASGSPFENV 476 (584)
Q Consensus 464 rai~AsGSPf~pv 476 (584)
+-+|.||.=.+.-
T Consensus 245 ~rViGtgT~LDsa 257 (444)
T PLN00112 245 AKNFHALTRLDEN 257 (444)
T ss_pred cceEEeeccHHHH
Confidence 3466776554433
No 492
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=32.02 E-value=42 Score=37.37 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=23.4
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecC
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (584)
+|||+|+|+||.-.|-.|...+. . . -+|.++.+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~-~-~-------~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGP-D-A-------LSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCT-C-S-------SEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCC-C-C-------cEEEEEecC
Confidence 69999999999988888877643 0 0 368888775
No 493
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=31.84 E-value=43 Score=35.99 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=25.3
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCc
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (584)
-|+|+|||-||+..|..|.++ |. .+.++|+-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCC
Confidence 589999999999998887664 54 377888753
No 494
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.82 E-value=37 Score=37.07 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.4
Q ss_pred eEEEeCcchhhHHHHHHHHHH
Q 007939 325 KIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~ 345 (584)
||+|+|+|.+|+..|+.+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~ 22 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ 22 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC
Confidence 799999999999998887754
No 495
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=31.81 E-value=42 Score=33.89 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=53.1
Q ss_pred eEEEeCcchhhHHHHHHHHHHHHHHcCCChhhhcCcEEEEecCcccccCCCCCChhhhccccccCCcCCcccCCCHHHH-
Q 007939 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV- 403 (584)
Q Consensus 325 riv~~GAGsAg~GiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ev- 403 (584)
+|+|+|+|..|..+|+.|.+. | .++.++|.+--.... .+.+..--.+-... ..+...|.++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~~~--~~~~~~~~~~v~gd----~t~~~~L~~ag 63 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERVEE--FLADELDTHVVIGD----ATDEDVLEEAG 63 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHHHH--HhhhhcceEEEEec----CCCHHHHHhcC
Confidence 799999999999999998774 3 368888885222111 01100000000000 0123457776
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEe-cCCCC
Q 007939 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA-MSNPT 447 (584)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFa-LSNPt 447 (584)
+.+ .|++|-+++. --.--++-.|+.+...-|-|.+ ..||.
T Consensus 64 i~~--aD~vva~t~~--d~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 64 IDD--ADAVVAATGN--DEVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred CCc--CCEEEEeeCC--CHHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 655 8888877753 1223344444433223444443 44444
No 496
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=31.72 E-value=2.5e+02 Score=31.80 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=29.4
Q ss_pred CCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 398 ASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 398 ~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
.++.+..+. .++++=.|. ...|.--++++|+ +..|||-
T Consensus 384 ~~~~~~~~~--adv~v~pS~-~Egfgl~~lEAma---~G~PVI~ 421 (500)
T TIGR02918 384 RNLSEVYKD--YELYLSAST-SEGFGLTLMEAVG---SGLGMIG 421 (500)
T ss_pred CCHHHHHHh--CCEEEEcCc-cccccHHHHHHHH---hCCCEEE
Confidence 356777766 788887774 6779999999995 5788776
No 497
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=31.53 E-value=3.3e+02 Score=26.66 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=30.5
Q ss_pred CCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEE
Q 007939 398 ASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (584)
Q Consensus 398 ~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIF 441 (584)
..+.+.++. .|++|-.|.. ..|.-.++++|+ +..|+|.
T Consensus 260 ~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~g~PvI~ 297 (365)
T cd03807 260 SDVPALLNA--LDVFVLSSLS-EGFPNVLLEAMA---CGLPVVA 297 (365)
T ss_pred ccHHHHHHh--CCEEEeCCcc-ccCCcHHHHHHh---cCCCEEE
Confidence 457788877 8999977764 678889999995 5799986
No 498
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=31.50 E-value=89 Score=33.78 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=25.1
Q ss_pred CCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 007939 398 ASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (584)
Q Consensus 398 ~~L~evV~~vkptvLIG~S~~~g~Fteevv~~M~~~~~erPIIFaLS 444 (584)
.+..++++. .|++| ++...+...+++++.++....+.-||+-.|
T Consensus 73 sd~~eaa~~--ADvVI-laVP~~~~v~~Vl~~L~~~L~~g~IVId~S 116 (342)
T PRK12557 73 SDDAEAAKH--GEIHI-LFTPFGKKTVEIAKNILPHLPENAVICNTC 116 (342)
T ss_pred CCHHHHHhC--CCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEEec
Confidence 467777766 67766 444334346777777754333344555444
No 499
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=31.42 E-value=40 Score=37.84 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=18.5
Q ss_pred ceEEEeCcchhhHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQ 344 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~ 344 (584)
.+|+|+|||.+|+-.|..|..
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 689999999999999887754
No 500
>PLN02568 polyamine oxidase
Probab=31.12 E-value=50 Score=37.71 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.2
Q ss_pred ceEEEeCcchhhHHHHHHHHHH
Q 007939 324 QKIVVVGAGSAGLGVLKMAVQA 345 (584)
Q Consensus 324 ~riv~~GAGsAg~GiA~li~~~ 345 (584)
.+|+|+|||.||+..|..|...
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhc
Confidence 6899999999999999999875
Done!