Your job contains 1 sequence.
>007940
MENGFSSPRNDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRER
KDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKP
IRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSVRKR
KDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLT
RENVASHLQKYRLYLTRLQKDELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSN
GGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFNGSF
VPGHSDVNFTSFDSAIPTQPWSEVSETQFQHEHKPLRLENDFTQLPLPGPRHHIQVDCIQ
SGPSASSKPSVVDKDNLKPFDCTYKSNYPNAIPIGSAVDTFPVQTTSPIVNHQPFEPIAR
TTSSMKSQGLNLSCIPDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDIN
FSEYNDPALNSEVPFHLYDTMRFDYEHYYDPTECPIIDQGLFIA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007940
(584 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 995 2.9e-116 2
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 459 9.1e-72 2
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 689 4.7e-70 2
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 709 5.5e-70 1
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 691 4.4e-68 1
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 604 7.3e-59 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 466 3.1e-44 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 466 3.1e-44 1
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 454 5.7e-43 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 177 3.5e-22 2
TAIR|locus:2199342 - symbol:APRR6 "pseudo-response regula... 191 1.8e-21 2
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 238 5.0e-17 1
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 222 5.9e-15 1
TAIR|locus:2058445 - symbol:MYBC1 "AT2G40970" species:370... 190 5.3e-14 1
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 206 4.5e-13 1
TAIR|locus:2148348 - symbol:BOA "AT5G59570" species:3702 ... 193 9.1e-13 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 176 1.7e-12 1
TIGR_CMR|BA_5504 - symbol:BA_5504 "DNA-binding response r... 176 1.7e-12 1
TAIR|locus:2175364 - symbol:AT5G05090 "AT5G05090" species... 186 1.9e-12 1
TAIR|locus:2103247 - symbol:AT3G10760 "AT3G10760" species... 188 7.0e-12 1
TIGR_CMR|BA_1312 - symbol:BA_1312 "DNA-binding response r... 167 1.6e-11 1
TIGR_CMR|DET_1540 - symbol:DET_1540 "DNA-binding response... 167 1.6e-11 1
TAIR|locus:2167639 - symbol:GLK2 "AT5G44190" species:3702... 186 1.9e-11 1
TIGR_CMR|CJE_1358 - symbol:CJE_1358 "DNA-binding response... 166 2.0e-11 1
TIGR_CMR|BA_3900 - symbol:BA_3900 "lantibiotic biosynthes... 164 3.3e-11 1
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 164 3.3e-11 1
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ... 164 3.3e-11 1
TIGR_CMR|SPO_1679 - symbol:SPO_1679 "DNA-binding response... 171 3.5e-11 1
UNIPROTKB|Q5Z5I4 - symbol:GLK1 "Probable transcription fa... 185 3.7e-11 1
UNIPROTKB|P0A5Z4 - symbol:mtrA "DNA-binding response regu... 166 4.1e-11 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 162 5.5e-11 1
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 162 5.5e-11 1
TIGR_CMR|GSU_1495 - symbol:GSU_1495 "sigma-54 dependent D... 183 6.3e-11 1
UNIPROTKB|P0AE67 - symbol:cheY species:83333 "Escherichia... 161 7.0e-11 1
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 161 7.0e-11 1
TIGR_CMR|CPS_1750 - symbol:CPS_1750 "transcriptional regu... 170 8.3e-11 1
UNIPROTKB|Q4GZK7 - symbol:rr4 "Type A response regulator ... 125 1.1e-10 2
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 158 1.5e-10 1
TIGR_CMR|GSU_1320 - symbol:GSU_1320 "sigma-54 dependent D... 179 1.8e-10 1
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 156 2.4e-10 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 155 3.1e-10 1
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 155 3.1e-10 1
TIGR_CMR|CPS_4597 - symbol:CPS_4597 "transcriptional regu... 159 5.0e-10 2
TIGR_CMR|CHY_1018 - symbol:CHY_1018 "chemotaxis response ... 153 5.1e-10 1
TIGR_CMR|DET_0135 - symbol:DET_0135 "DNA-binding response... 162 5.5e-10 1
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 152 6.5e-10 1
UNIPROTKB|P14375 - symbol:zraR species:83333 "Escherichia... 173 7.4e-10 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 151 8.4e-10 1
TIGR_CMR|CPS_2786 - symbol:CPS_2786 "response regulator" ... 163 9.4e-10 1
TIGR_CMR|BA_0571 - symbol:BA_0571 "DNA-binding response r... 158 1.2e-09 1
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 149 1.4e-09 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 149 1.4e-09 1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 149 1.4e-09 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 149 1.4e-09 1
UNIPROTKB|Q4KG71 - symbol:fleR "Sigma-54 dependent DNA-bi... 171 1.4e-09 1
UNIPROTKB|P0A5Z6 - symbol:prrA "Transcriptional regulator... 160 1.4e-09 1
TAIR|locus:2148720 - symbol:PHL1 "AT5G29000" species:3702... 169 1.8e-09 1
UNIPROTKB|Q48GE0 - symbol:fleR "Sigma-54 dependent DNA-bi... 170 1.8e-09 1
UNIPROTKB|Q884Y0 - symbol:fleR "Sigma-54 dependent transc... 170 1.8e-09 1
TIGR_CMR|CJE_1397 - symbol:CJE_1397 "DNA-binding response... 157 1.9e-09 1
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 173 2.0e-09 1
TIGR_CMR|GSU_2946 - symbol:GSU_2946 "DNA-binding heavy me... 156 2.7e-09 1
TIGR_CMR|BA_1119 - symbol:BA_1119 "DNA-binding response r... 158 2.8e-09 1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 146 2.9e-09 1
TIGR_CMR|BA_5581 - symbol:BA_5581 "stage 0 sporulation pr... 146 2.9e-09 1
TAIR|locus:2026739 - symbol:AT1G69580 species:3702 "Arabi... 165 2.9e-09 1
TIGR_CMR|CHY_2567 - symbol:CHY_2567 "DNA-binding response... 158 3.1e-09 1
TAIR|locus:2172394 - symbol:MYR1 "myb-related protein 1" ... 166 3.6e-09 1
TIGR_CMR|GSU_0372 - symbol:GSU_0372 "sigma-54 dependent D... 167 3.6e-09 1
TIGR_CMR|BA_0585 - symbol:BA_0585 "DNA-binding response r... 155 3.7e-09 1
TIGR_CMR|ECH_1012 - symbol:ECH_1012 "DNA-binding response... 160 4.3e-09 1
TIGR_CMR|DET_0232 - symbol:DET_0232 "DNA-binding response... 155 5.0e-09 1
TIGR_CMR|BA_1955 - symbol:BA_1955 "DNA-binding response r... 155 5.3e-09 1
TAIR|locus:2027237 - symbol:ARR15 "response regulator 15"... 149 5.5e-09 1
TIGR_CMR|CHY_1855 - symbol:CHY_1855 "sigma-54 dependent t... 164 7.3e-09 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 142 7.8e-09 1
TIGR_CMR|GSU_2581 - symbol:GSU_2581 "sigma-54 dependent t... 164 7.8e-09 1
TIGR_CMR|DET_0170 - symbol:DET_0170 "DNA-binding response... 154 9.2e-09 1
TIGR_CMR|CHY_0606 - symbol:CHY_0606 "DNA-binding response... 153 9.2e-09 1
TIGR_CMR|SO_2426 - symbol:SO_2426 "DNA-binding response r... 153 9.7e-09 1
UNIPROTKB|Q8EEQ6 - symbol:cheY "Chemotaxis signal transdu... 141 9.9e-09 1
TIGR_CMR|SO_2318 - symbol:SO_2318 "chemotaxis protein Che... 141 9.9e-09 1
TIGR_CMR|GSU_2915 - symbol:GSU_2915 "sigma-54 dependent D... 163 1.0e-08 1
TIGR_CMR|SO_4477 - symbol:SO_4477 "transcriptional regula... 153 1.0e-08 1
TIGR_CMR|APH_1099 - symbol:APH_1099 "DNA-binding response... 157 1.2e-08 1
TAIR|locus:2100880 - symbol:AT3G04450 species:3702 "Arabi... 162 1.2e-08 1
UNIPROTKB|Q74DM7 - symbol:cheY34H-1 "Response receiver Ch... 140 1.3e-08 1
TIGR_CMR|GSU_1289 - symbol:GSU_1289 "chemotaxis protein C... 140 1.3e-08 1
TIGR_CMR|GSU_0776 - symbol:GSU_0776 "sigma-54 dependent D... 162 1.3e-08 1
UNIPROTKB|Q3JZR1 - symbol:csrR "DNA-binding response regu... 152 1.4e-08 1
TIGR_CMR|BA_1660 - symbol:BA_1660 "chemotaxis response re... 139 1.6e-08 1
TIGR_CMR|SO_4633 - symbol:SO_4633 "transcriptional regula... 153 1.7e-08 1
TIGR_CMR|SPO_0251 - symbol:SPO_0251 "DNA-binding response... 152 1.7e-08 1
TIGR_CMR|GSU_3217 - symbol:GSU_3217 "sigma-54 dependent D... 161 2.0e-08 1
UNIPROTKB|Q3ADB1 - symbol:cheY1 "Chemotaxis protein CheY"... 138 2.1e-08 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 138 2.1e-08 1
TIGR_CMR|CHY_1026 - symbol:CHY_1026 "chemotaxis protein C... 138 2.1e-08 1
TIGR_CMR|SPO_2629 - symbol:SPO_2629 "C4-dicarboxylate tra... 159 2.2e-08 1
TIGR_CMR|GSU_1003 - symbol:GSU_1003 "nitrogen regulation ... 160 2.4e-08 1
UNIPROTKB|Q48ND2 - symbol:cheY1 "Chemotaxis protein CheY"... 137 2.7e-08 1
WARNING: Descriptions of 336 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 995 (355.3 bits), Expect = 2.9e-116, Sum P(2) = 2.9e-116
Identities = 221/353 (62%), Positives = 255/353 (72%)
Query: 13 FNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVN 72
F+P GLRVLVVDDD WLKILEKMLKKCSYEVTTCGLAR+AL LLRERKDGYDIVISDVN
Sbjct: 6 FSPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVN 65
Query: 73 MPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQH 132
MPDMDGFKLLEHVGLE+DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL+ IWQH
Sbjct: 66 MPDMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQH 125
Query: 133 VFRKKIHEVRDIENIEGFE--SIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDA--ENR-- 186
V RKK+ EVRDIE G+E + +TR + G GED++ +KRKD E +
Sbjct: 126 VLRKKLQEVRDIEGC-GYEGGADWITRYDEAHFLGG----GEDVSFGKKRKDFDFEKKLL 180
Query: 187 HDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFD-KVGPKKILDLMNVPWLTRENVA 245
D+ D +SS+KKARVVWS +LH KFV AVNQIG D K GPKKILDLMNVPWLTRENVA
Sbjct: 181 QDESD-PSSSSSKKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVA 239
Query: 246 SHLQKYRLYLTRLQKD-ELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYR 304
SHLQKYRLYL+RL+K ELK GG+K DS KD + G Q+ Y
Sbjct: 240 SHLQKYRLYLSRLEKGKELKCYSGGVKNADSSPKDVEVNSGYQSP---------GRSSYV 290
Query: 305 FSGSNSVVQNVDAKSLEGDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFN 357
FSG NS++Q K+ E D K + + ++ L D+ K + ++IGF+
Sbjct: 291 FSGGNSLIQ----KATEIDPKPLASASLSD----LNTDVIMPPKTKKTRIGFD 335
Score = 171 (65.3 bits), Expect = 2.9e-116, Sum P(2) = 2.9e-116
Identities = 61/170 (35%), Positives = 85/170 (50%)
Query: 420 QSGPSASSKPSVVDKDNLKPFDCTYKSNYPNAIPIGSAVDTFPV-QTTSPIVNHQPFEPI 478
QS A+S PS+++++ P++ + NA D F + Q P V Q +P
Sbjct: 376 QSSYVANSAPSLMEEEMKPPYETPAGGSSVNA-------DEFLMPQDKIPTVTLQDLDP- 427
Query: 479 ARTTSSMKSQGLNLSCIPDLEAAQRNINWGVGSS--LTSLDEDLQLCWLQGDCFAMNLGL 536
S+MK Q N EA R++NW + S SLD DL L WLQG+ F N GL
Sbjct: 428 ----SAMKLQEFNT------EAILRSLNWELPESHHSVSLDTDLDLTWLQGERFLANTGL 477
Query: 537 QDINFSEYND-PALNSEVPFHLYDTMRFDYEHYYDPTECP-IIDQGLFIA 584
Q F +Y+ P+L SE+P HL + E DP E ++DQGLFI+
Sbjct: 478 Q---FQDYSSSPSLLSELPAHLN---WYGNERLPDPDEYSFMVDQGLFIS 521
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 459 (166.6 bits), Expect = 9.1e-72, Sum P(2) = 9.1e-72
Identities = 90/126 (71%), Positives = 102/126 (80%)
Query: 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMP 74
P+GLRVLVVDDD L ILE+ML+ C YEVT C A ALSLLR+ K G+DIVISDV+MP
Sbjct: 34 PSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMP 93
Query: 75 DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
DMDGFKLLEHVGLEMDLPVIMMS D S V+KGV HGA DYL+KP+RM+ L+NIWQHV
Sbjct: 94 DMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVV 153
Query: 135 RKKIHE 140
RK+ E
Sbjct: 154 RKRRSE 159
Score = 291 (107.5 bits), Expect = 9.1e-72, Sum P(2) = 9.1e-72
Identities = 70/134 (52%), Positives = 87/134 (64%)
Query: 158 SGSDQSVD---GPLLTGEDL-TSVRKRKDAENRH--DDRDCGDASSTKKARVVWSIDLHQ 211
SG + +VD + G + +S RKRKD E DD+D DAS+ KK RVVWS++LHQ
Sbjct: 190 SGGEDAVDDNSSSVNEGNNWRSSSRKRKDEEGEEQGDDKD-EDASNLKKPRVVWSVELHQ 248
Query: 212 KFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDELKTSVGGIK 271
+FV AVNQ+G +K PKKIL+LMNVP LTRENVASHLQKYR+YL RL + G +
Sbjct: 249 QFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRL--GGVSQHQGNLN 306
Query: 272 QKDSPSKDSAASFG 285
+D ASFG
Sbjct: 307 NSFMTGQD--ASFG 318
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 689 (247.6 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 145/260 (55%), Positives = 187/260 (71%)
Query: 8 PRNDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIV 67
P ND F P+GLR+LVVDDD + L ILEKML + Y+VT C A AL++LRERKD +D+V
Sbjct: 2 PINDQF-PSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLV 60
Query: 68 ISDVNMPDMDGFKLLEHVGL-EMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
+SDV+MP M+G+ LL+ VGL EMDLPVIMMSVDG T+ VM G+ HGACDYL+KPIR +EL
Sbjct: 61 LSDVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEEL 120
Query: 127 RNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPL--LTGEDLTSVRKRKDAE 184
+NIWQHV R+K +++ + + E SGS ++V + + E L R +K +
Sbjct: 121 KNIWQHVVRRKCVMKKELRSSQALED--NKNSGSLETVVVSVSECSEESLMKCRNKKKKK 178
Query: 185 NRHDDRDCG------DASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPW 238
R DRD D ++KK+RVVWSI+LHQ+FV AVN++G DK PK+IL+LMNVP
Sbjct: 179 KRSVDRDDNEDDLLLDPGNSKKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPG 238
Query: 239 LTRENVASHLQKYRLYLTRL 258
L+RENVASHLQK+RLYL RL
Sbjct: 239 LSRENVASHLQKFRLYLKRL 258
Score = 39 (18.8 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 280 SAASFGIQNSITVHHHNDVSNGGYRFS-GSN 309
S A G+ +S DV+N R GSN
Sbjct: 337 SVAVHGLSSSANFRQRGDVNNNRIRQGYGSN 367
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 153/257 (59%), Positives = 185/257 (71%)
Query: 10 NDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVIS 69
+D F PA LRVLVVDDD L ILE+ML C Y VT C A ALSLLR+ K+G+DIVIS
Sbjct: 21 SDPF-PANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVIS 79
Query: 70 DVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
DV+MPDMDGFKLLEHVGLEMDLPVIMMS D S V+KGV HGA DYL+KP+R++ L+NI
Sbjct: 80 DVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNI 139
Query: 130 WQHVFRKKIHEVRDIEN----IE--GFESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDA 183
WQHV RKK +E E+ IE G + + D + + + S RKRK+
Sbjct: 140 WQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEE 199
Query: 184 E--NRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTR 241
E ++ DD++ D+SS KK RVVWS++LHQ+FV AVNQ+G DK PKKIL++MNVP LTR
Sbjct: 200 EVDDQGDDKE--DSSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTR 257
Query: 242 ENVASHLQKYRLYLTRL 258
ENVASHLQKYR+YL RL
Sbjct: 258 ENVASHLQKYRIYLRRL 274
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 154/315 (48%), Positives = 199/315 (63%)
Query: 11 DTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISD 70
D F P G+RVL VDDD LKILE +L+ C Y VTT A+ AL LLRE K+ +D+VISD
Sbjct: 11 DQF-PVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISD 69
Query: 71 VNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIW 130
V+MPDMDGFKLLE VGLEMDLPVIM+S + VMKGV HGACDYLLKP+R++EL+NIW
Sbjct: 70 VDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIW 129
Query: 131 QHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDA--ENRHD 188
QHV R + + R N G + SG++ + G+ RKRKD E+ +
Sbjct: 130 QHVVRSRFDKNRGSNN-NGDKR---DGSGNEGVGNSDQNNGK---GNRKRKDQYNEDEDE 182
Query: 189 DRDCGDAS-STKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASH 247
DRD D S + KK RVVW+++LH+KFV AVNQ+G++K PKKILDLMNV LTRENVASH
Sbjct: 183 DRDDNDDSCAQKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASH 242
Query: 248 LQKYRLYLTRLQKDELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSG 307
LQK+RLYL R + G+ + + +S F N + HH + G ++ G
Sbjct: 243 LQKFRLYLKR---------ISGVANQQAIMANSELHFMQMNGLDGFHHRPIPVGSGQYHG 293
Query: 308 SNSVVQNVDAKSLEG 322
+++ + G
Sbjct: 294 GAPAMRSFPPNGILG 308
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 130/256 (50%), Positives = 174/256 (67%)
Query: 11 DTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISD 70
D F P G+RVL VDDD L+IL+ +L++C Y VTT A+ AL LLRE K+ +D+VISD
Sbjct: 11 DQF-PVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISD 69
Query: 71 VNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIW 130
V+MPDMDGFKLLE VGLEMDLPVIM+S + VMKGV+HGACDYLLKP+R++EL+NIW
Sbjct: 70 VDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIW 129
Query: 131 QHVFRK-KIHEVR-DIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHD 188
QHV RK K+ + + ++ N G R +Q + ++ E R +
Sbjct: 130 QHVVRKSKLKKNKSNVSNGSG-NCDKANRKRKEQY---------------EEEEEEERGN 173
Query: 189 DRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHL 248
D D D ++ KK RV+W+ +LH KF+ AV+ +G ++ PKKILDLMNV LTRENVASHL
Sbjct: 174 DND--DPTAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL 231
Query: 249 QKYRLYLTRLQKDELK 264
QK+R+ L ++ D ++
Sbjct: 232 QKFRVALKKVSDDAIQ 247
Score = 231 (86.4 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 54/141 (38%), Positives = 83/141 (58%)
Query: 178 RKRKDA--ENRHDDR--DCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDL 233
RKRK+ E ++R D D ++ KK RV+W+ +LH KF+ AV+ +G ++ PKKILDL
Sbjct: 157 RKRKEQYEEEEEEERGNDNDDPTAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDL 216
Query: 234 MNVPWLTRENVASHLQKYRLYLTRLQKDELKTSVGGIKQKDSPSKDSAASFGIQNSITVH 293
MNV LTRENVASHLQK+R+ L ++ D ++ + DS + G+ H
Sbjct: 217 MNVDKLTRENVASHLQKFRVALKKVSDDAIQQA--NRAAIDSHFMQMNSQKGLGGFY--H 272
Query: 294 HHNDVSNGGYRFSGSNSVVQN 314
HH + G +F G +++++
Sbjct: 273 HHRGIPVGSGQFHGGTTMMRH 293
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 100/250 (40%), Positives = 151/250 (60%)
Query: 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMP 74
P GLRVLV+DDD ++L ++E +L KCSY+VTT R+A+ + + D+VISD P
Sbjct: 8 PYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFP 67
Query: 75 DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
DG +L+ V + +P ++M+ G+T+ VMK V +GA D+LLKP+R++EL NIWQH+F
Sbjct: 68 TEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIF 127
Query: 135 RKKIHEVRD---IENIE--GFESIHMTRSGSDQSVDGPLLTGEDLTSVRK--RKDAENRH 187
RK++ + ++ + N+E G + + + + T L + R D N +
Sbjct: 128 RKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYN 187
Query: 188 DDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASH 247
+ D K+R+ W+ LH++F+ AVN +G DK PKKIL +M V LTRE VASH
Sbjct: 188 GE--ITDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASH 245
Query: 248 LQKYRLYLTR 257
LQKYR+ L +
Sbjct: 246 LQKYRMQLKK 255
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 100/250 (40%), Positives = 151/250 (60%)
Query: 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMP 74
P GLRVLV+DDD ++L ++E +L KCSY+VTT R+A+ + + D+VISD P
Sbjct: 8 PYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFP 67
Query: 75 DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
DG +L+ V + +P ++M+ G+T+ VMK V +GA D+LLKP+R++EL NIWQH+F
Sbjct: 68 TEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIF 127
Query: 135 RKKIHEVRD---IENIE--GFESIHMTRSGSDQSVDGPLLTGEDLTSVRK--RKDAENRH 187
RK++ + ++ + N+E G + + + + T L + R D N +
Sbjct: 128 RKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYN 187
Query: 188 DDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASH 247
+ D K+R+ W+ LH++F+ AVN +G DK PKKIL +M V LTRE VASH
Sbjct: 188 GE--ITDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASH 245
Query: 248 LQKYRLYLTR 257
LQKYR+ L +
Sbjct: 246 LQKYRMQLKK 255
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 97/236 (41%), Positives = 146/236 (61%)
Query: 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMP 74
P GLRVLV D+D ++L ILE+ L+K Y+VT C A+ LR ++ +D+ + VN
Sbjct: 39 PEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNA 98
Query: 75 DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
+ D F+ L +G EMDLP+I++S D V K + +GA DYL+KPIR ++LR +++H+
Sbjct: 99 EGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLV 158
Query: 135 RKKIHEVRDIENIEGFESI-HMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCG 193
KK+ E R + E ++ + S D ++ P + + + + E+RHD D
Sbjct: 159 -KKMRERRSVVTGEAEKAAGEKSSSVGDSTIRNPNKSKRS-SCLEAEVNEEDRHDHNDRA 216
Query: 194 DASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQ 249
ASS KK RVVW +LHQ F+ AV+ +G ++ PKKILD+M V +++RENVASHLQ
Sbjct: 217 CASSAKKRRVVWDEELHQNFLNAVDFLGLERAVPKKILDVMKVDYISRENVASHLQ 272
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 177 (67.4 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 41/108 (37%), Positives = 66/108 (61%)
Query: 161 DQSVDGPLLTGE-DLTSVRKRKDAENRHDDRDCG----DASSTKKARVVWSIDLHQKFVK 215
++ G L++ + D + K++D E + ++ G + T + +V W+ +LH+KFV+
Sbjct: 253 EEGETGDLISEKTDSVDIHKKED-ETKPINKSSGIKNVSGNKTSRKKVDWTPELHKKFVQ 311
Query: 216 AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTR-LQKDE 262
AV Q+G D+ P +IL+LM V LTR NVASHLQK+R + L KD+
Sbjct: 312 AVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHRKNILPKDD 359
Score = 161 (61.7 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 45/133 (33%), Positives = 70/133 (52%)
Query: 15 PAGLRVLVV------DDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVI 68
P GL+VL++ D D + L+ Y VTT +ALS + + + + I I
Sbjct: 15 PKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFHIAI 74
Query: 69 SDVNMP-DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
+VNM + + FK LE + LP IM+S D + MK + GA ++L KP+ ++L+
Sbjct: 75 VEVNMSAESESFKFLE--AAKDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLK 132
Query: 128 NIWQHVFRKKIHE 140
NIWQHV K ++
Sbjct: 133 NIWQHVVHKAFND 145
>TAIR|locus:2199342 [details] [associations]
symbol:APRR6 "pseudo-response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
Uniprot:Q9C9F6
Length = 755
Score = 191 (72.3 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 42/136 (30%), Positives = 79/136 (58%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ +L++D D A + L ML++ S V + +A ALS++ ++K ++I+++ MP +D
Sbjct: 13 ISILLIDHDTASIASLTSMLQQFSKRVMSVDVASKALSMIEKQKKEIGLIIANIEMPHID 72
Query: 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
L + L+ D+P+I+++ + +T + AC L KPI +++N+WQHVF KK
Sbjct: 73 SHSFLNALLLK-DIPLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKNMWQHVFSKK 131
Query: 138 IHEVRDIENIEGFESI 153
E++ I E E++
Sbjct: 132 SQELKKINITEDQENV 147
Score = 144 (55.7 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 54/209 (25%), Positives = 98/209 (46%)
Query: 197 STKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLT 256
S + + +W+ + H KF+ A++ +G + PK IL++MN P LT V SHLQKY+ +
Sbjct: 219 SVGRRKSLWNSERHMKFIAAISILGEEDFRPKSILEIMNDPNLTHRQVGSHLQKYKAQID 278
Query: 257 RLQKDELKTSVGGI-KQKDSPS--KDSAASFGIQNSITVHHHNDVSNG-GYRFSGSNSVV 312
++ + I K + PS K + N++ V N + N + S S S+
Sbjct: 279 QISYTLPRNESRSIDKTFEYPSNYKYPFKISDLTNNLIVS--NSLWNSLEKKNSASASIT 336
Query: 313 QNVDAKSLEGDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFNGSFVPG----HSDVN 368
Q + K + G+ + +T+P L + + H +++ N +FVP + N
Sbjct: 337 QFLFKKPI-GEKE--ETMPKFHIGGKLDLSNHSVHGNVLNKLSMNVNFVPSTISNNPAYN 393
Query: 369 FTSFDSA-IPTQPWSEVSETQFQHEHKPL 396
S DS+ I + ++ + T E+ P+
Sbjct: 394 ILSIDSSSIDSSSYTGLVSTGLSSENSPI 422
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 238 (88.8 bits), Expect = 5.0e-17, P = 5.0e-17
Identities = 47/123 (38%), Positives = 78/123 (63%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
LRVL+V+ D + +I+ +L+KC Y+V A +L+E+ D++++++++P +
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSIS 96
Query: 78 GFKLL----EHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
GF LL EH + ++PVIMMS V+K + GA DYL+KP+R EL+N+WQHV
Sbjct: 97 GFALLALVMEHEACK-NIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHV 155
Query: 134 FRK 136
+R+
Sbjct: 156 WRR 158
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 222 (83.2 bits), Expect = 5.9e-15, P = 5.9e-15
Identities = 45/123 (36%), Positives = 75/123 (60%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+R+L+ D+D L + +L +CSY+VT AR + L DI+++++++P
Sbjct: 19 VRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAK 78
Query: 78 GFKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
G K+L ++ + DL PVIMMS E V+K ++ GA DYL+KP+R EL N+W H++
Sbjct: 79 GMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHMW 138
Query: 135 RKK 137
R++
Sbjct: 139 RRR 141
>TAIR|locus:2058445 [details] [associations]
symbol:MYBC1 "AT2G40970" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009409 "response to cold" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC004261
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC002409 EMBL:AY072381
EMBL:BT000098 IPI:IPI00539516 PIR:T00761 RefSeq:NP_181630.1
UniGene:At.27776 ProteinModelPortal:O22210 SMR:O22210
EnsemblPlants:AT2G40970.1 GeneID:818697 KEGG:ath:AT2G40970
TAIR:At2g40970 eggNOG:NOG255246 HOGENOM:HOG000238691
InParanoid:O22210 OMA:RYEDSEY PhylomeDB:O22210
ProtClustDB:CLSN2913178 ArrayExpress:O22210 Genevestigator:O22210
Uniprot:O22210
Length = 248
Score = 190 (71.9 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 39/75 (52%), Positives = 49/75 (65%)
Query: 195 ASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLY 254
A + K+ R+VW+ LH++FV AV +G PK I+ LM+V LTRENVASHLQKYRLY
Sbjct: 100 ARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLY 159
Query: 255 LTRLQKDELKTSVGG 269
L R+Q GG
Sbjct: 160 LRRMQGGNGNGITGG 174
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 206 (77.6 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 47/123 (38%), Positives = 71/123 (57%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+RVL+V++D I+ +L+ CSYEV A +L + + DIV+++V MP +
Sbjct: 78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLS 137
Query: 78 GF----KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
G K+L H ++PVIMMS V K + GA D+L+KPIR EL+ +WQHV
Sbjct: 138 GIGLLCKILNHKS-RRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHV 196
Query: 134 FRK 136
+R+
Sbjct: 197 WRR 199
>TAIR|locus:2148348 [details] [associations]
symbol:BOA "AT5G59570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0009909 "regulation of flower development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GO:GO:0003677 GO:GO:0007623 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB025604
GO:GO:0009909 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT026065 EMBL:AK117348
EMBL:AB206577 IPI:IPI00538187 RefSeq:NP_200765.1 UniGene:At.29219
ProteinModelPortal:Q9LTH4 SMR:Q9LTH4 STRING:Q9LTH4
EnsemblPlants:AT5G59570.1 GeneID:836076 KEGG:ath:AT5G59570
TAIR:At5g59570 InParanoid:Q9LTH4 OMA:ERSRTIH PhylomeDB:Q9LTH4
ProtClustDB:CLSN2685121 Genevestigator:Q9LTH4 Uniprot:Q9LTH4
Length = 298
Score = 193 (73.0 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 181 KDAENRHDDRDCGDAS--STKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPW 238
+D+ D DAS ++K+ R+VW+ LH++FV V +G PK I+ LMNV
Sbjct: 120 EDSTAEEGDSGPEDASGKTSKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEG 179
Query: 239 LTRENVASHLQKYRLYLTRLQ 259
LTRENVASHLQKYRLYL R+Q
Sbjct: 180 LTRENVASHLQKYRLYLKRIQ 200
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 176 (67.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 38/120 (31%), Positives = 71/120 (59%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
VL VDD + ++ ++L+ Y VTT + AL +L ++ + ++I+D MP+M GF
Sbjct: 13 VLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRNVH-MIITDYCMPEMTGF 71
Query: 80 KLLEHV--GLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
LL+ V E+ ++PV++MS + +R+ + ++ GA D+L+KP+R ++ + V K
Sbjct: 72 DLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRVIMK 131
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 176 (67.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 44/132 (33%), Positives = 75/132 (56%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+++LVVDD+ + ++ L+ YEV T A D +L +G D++I DV +PD D
Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLT---AADGREVLERWNEGPDVLILDVMLPDTD 57
Query: 78 GFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL----RNIWQH 132
G++LL + D+PV+M++ + + + G+Q GA DY+ KP EL +N+ +
Sbjct: 58 GYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
Query: 133 VFRKKI---HEV 141
V +K++ HEV
Sbjct: 118 VKKKEVTVSHEV 129
>TAIR|locus:2175364 [details] [associations]
symbol:AT5G05090 "AT5G05090" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002688
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AB005245 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY093188
EMBL:BT006289 IPI:IPI00523871 RefSeq:NP_196128.1 UniGene:At.33034
ProteinModelPortal:Q9FF65 SMR:Q9FF65 PRIDE:Q9FF65
EnsemblPlants:AT5G05090.1 GeneID:830391 KEGG:ath:AT5G05090
TAIR:At5g05090 InParanoid:Q9FF65 OMA:MREEDSN PhylomeDB:Q9FF65
ProtClustDB:CLSN2716677 ArrayExpress:Q9FF65 Genevestigator:Q9FF65
Uniprot:Q9FF65
Length = 266
Score = 186 (70.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 40/85 (47%), Positives = 52/85 (61%)
Query: 175 TSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLM 234
T + AE D A + K+ R+VW+ LH++FV AV +G PK I+ LM
Sbjct: 56 TPPQPNSSAEIAGDSTGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM 115
Query: 235 NVPWLTRENVASHLQKYRLYLTRLQ 259
+V LTRENVASHLQKYRLYL R++
Sbjct: 116 SVDGLTRENVASHLQKYRLYLKRMK 140
>TAIR|locus:2103247 [details] [associations]
symbol:AT3G10760 "AT3G10760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AC011708 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000238691 ProtClustDB:CLSN2716677
IPI:IPI00530545 RefSeq:NP_187687.1 UniGene:At.39869
ProteinModelPortal:Q9SG82 SMR:Q9SG82 PRIDE:Q9SG82
EnsemblPlants:AT3G10760.1 GeneID:820245 KEGG:ath:AT3G10760
TAIR:At3g10760 eggNOG:NOG312708 InParanoid:Q9SG82 OMA:FARWEEE
PhylomeDB:Q9SG82 Genevestigator:Q9SG82 Uniprot:Q9SG82
Length = 335
Score = 188 (71.2 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 39/69 (56%), Positives = 49/69 (71%)
Query: 193 GD--ASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQK 250
GD A + K+ R+VW+ LH++FV AV +G PK I+ LM+V LTRENVASHLQK
Sbjct: 96 GDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQK 155
Query: 251 YRLYLTRLQ 259
YRLYL R+Q
Sbjct: 156 YRLYLKRMQ 164
>TIGR_CMR|BA_1312 [details] [associations]
symbol:BA_1312 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843778.1 RefSeq:YP_017926.1 RefSeq:YP_027483.1
ProteinModelPortal:Q81TG5 DNASU:1086011
EnsemblBacteria:EBBACT00000008055 EnsemblBacteria:EBBACT00000016708
EnsemblBacteria:EBBACT00000023489 GeneID:1086011 GeneID:2814757
GeneID:2850086 KEGG:ban:BA_1312 KEGG:bar:GBAA_1312 KEGG:bat:BAS1213
OMA:WDEAENG ProtClustDB:CLSK916176
BioCyc:BANT260799:GJAJ-1288-MONOMER
BioCyc:BANT261594:GJ7F-1346-MONOMER Uniprot:Q81TG5
Length = 223
Score = 167 (63.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 45/148 (30%), Positives = 72/148 (48%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RVLVVDD+ +++ L YE ++AL L D YD V+ D+ MP+MDG
Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLET--DHYDFVVLDIMMPEMDG 62
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
+ + + D+P+I ++ GE + G++ GA DY++KP EL + V R+
Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122
Query: 139 HEVRDIENIEGFESIHMTRSGSDQSVDG 166
+ + E I+ F I + DG
Sbjct: 123 KQEQQ-EEIQ-FGPILINEKSRKIEADG 148
>TIGR_CMR|DET_1540 [details] [associations]
symbol:DET_1540 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_182238.1 ProteinModelPortal:Q3Z6B1
GeneID:3229185 KEGG:det:DET1540 PATRIC:21610100 OMA:ARIRCIL
ProtClustDB:CLSK741608 BioCyc:DETH243164:GJNF-1541-MONOMER
Uniprot:Q3Z6B1
Length = 225
Score = 167 (63.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 38/128 (29%), Positives = 76/128 (59%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLAR--DALSLLRERKDGYDIVISDVNMPD 75
+++L+++DD ++ + LK +VT +R L ++ E++ ++VI D+++PD
Sbjct: 1 MKILIIEDDYKIVQAISFALKIGWPDVTLLSASRGESGLRMIEEQRP--NLVILDLSLPD 58
Query: 76 MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
MDG ++L+ L D P+I+++V E S V++ ++ GA +Y++KP R EL + + R
Sbjct: 59 MDGLEVLKDARLFCDTPIIILTVRSEESDVVEALELGANEYIIKPFRQMELLARIRCILR 118
Query: 136 KKIHEVRD 143
+ I +D
Sbjct: 119 RPITTSKD 126
>TAIR|locus:2167639 [details] [associations]
symbol:GLK2 "AT5G44190" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP;IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009910 "negative regulation of flower
development" evidence=IGI] [GO:0010380 "regulation of chlorophyll
biosynthetic process" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006417 "regulation of translation" evidence=RCA]
[GO:0009651 "response to salt stress" evidence=RCA] [GO:0009657
"plastid organization" evidence=RCA] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045893 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 EMBL:AB005239
GO:GO:0009658 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
PROSITE:PS51293 GO:GO:0009910 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237698 EMBL:AB062490 EMBL:AY026773 EMBL:AY028368
EMBL:AY050386 EMBL:AY124819 IPI:IPI00535889 RefSeq:NP_199232.1
UniGene:At.19638 ProteinModelPortal:Q9FFH0 SMR:Q9FFH0 STRING:Q9FFH0
EnsemblPlants:AT5G44190.1 GeneID:834442 KEGG:ath:AT5G44190
TAIR:At5g44190 eggNOG:NOG271712 InParanoid:Q9FFH0 OMA:QEMEGNT
PhylomeDB:Q9FFH0 ProtClustDB:CLSN2916711 Genevestigator:Q9FFH0
Uniprot:Q9FFH0
Length = 386
Score = 186 (70.5 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 40/95 (42%), Positives = 58/95 (61%)
Query: 180 RKDAENRHDDRDC-GDASSTKKA-RVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVP 237
R+ +DC D + KK +V W+ +LH+KFV+AV Q+G DK P +IL++MNV
Sbjct: 125 RRGKRKGKKSKDCLSDENDIKKKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVK 184
Query: 238 WLTRENVASHLQKYRLYLTRLQKDELKTSVGGIKQ 272
LTR NVASHLQKYR + L E + + +++
Sbjct: 185 SLTRHNVASHLQKYRSHRKHLLAREAEAASWNLRR 219
>TIGR_CMR|CJE_1358 [details] [associations]
symbol:CJE_1358 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 PIR:A81329 RefSeq:YP_179345.1
ProteinModelPortal:Q5HTP0 STRING:Q5HTP0 GeneID:3231864
KEGG:cjr:CJE1358 PATRIC:20044514 OMA:ACIFEEI ProtClustDB:CLSK879148
BioCyc:CJEJ195099:GJC0-1384-MONOMER Uniprot:Q5HTP0
Length = 221
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 43/135 (31%), Positives = 74/135 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+++DDL+ +I+E+ L YEV C A++AL + ER +D+ I DV +P DG
Sbjct: 4 KILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERY--FDLWILDVKVPLGDG 61
Query: 79 FKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
F LL+ + P I M+ T+ + +G G DY+ KP + EL + + ++
Sbjct: 62 FSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRA 121
Query: 138 I-HEVRDIENI-EGF 150
H+ D E++ +GF
Sbjct: 122 FSHKNEDFEDLGDGF 136
>TIGR_CMR|BA_3900 [details] [associations]
symbol:BA_3900 "lantibiotic biosynthesis DNA-binding
response regulator, putative" species:198094 "Bacillus anthracis
str. Ames" [GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0017000 "antibiotic biosynthetic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_846147.1
RefSeq:YP_020538.1 RefSeq:YP_029866.1 ProteinModelPortal:Q81WR8
DNASU:1087972 EnsemblBacteria:EBBACT00000012233
EnsemblBacteria:EBBACT00000017950 EnsemblBacteria:EBBACT00000020089
GeneID:1087972 GeneID:2814840 GeneID:2849516 KEGG:ban:BA_3900
KEGG:bar:GBAA_3900 KEGG:bat:BAS3613 OMA:TAIVEHI
ProtClustDB:CLSK907876 BioCyc:BANT260799:GJAJ-3672-MONOMER
BioCyc:BANT261594:GJ7F-3789-MONOMER Uniprot:Q81WR8
Length = 220
Score = 164 (62.8 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 40/139 (28%), Positives = 78/139 (56%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L +DD+ L I++ L+K +EVT + L++ +E+ YD+++ DV MP++DG
Sbjct: 3 RILAIDDEDGILYIIKSALEKEGHEVTAVS---NPLTIPKEKFCHYDLILLDVMMPEIDG 59
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR-NIWQHVFRKK 137
F L + + +D P++ ++ ++ G+ G DY+ KP + ELR + HV R++
Sbjct: 60 FTLCKEIRDFVDSPIVFLTAKTMEKDLITGLSLGGDDYITKPFGIGELRARVSAHV-RRE 118
Query: 138 IHEVRDIENIEGFESIHMT 156
E ++ + G + H++
Sbjct: 119 HREKQNAFFLSGL-TFHLS 136
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 164 (62.8 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 35/122 (28%), Positives = 72/122 (59%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVVDD+ L K+L++ +EV + +AL+ L++R+ +++++D+NMP+M+G
Sbjct: 8 KILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQQRE--VNVIVTDINMPEMNG 65
Query: 79 FKLLEHVGLEMDLP-VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
L + VIM++ G ++ + GA +Y+ KP+++ EL++I +F++
Sbjct: 66 ITFLRELNKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVKLDELKSILTKIFKES 125
Query: 138 IH 139
H
Sbjct: 126 CH 127
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 164 (62.8 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 40/121 (33%), Positives = 68/121 (56%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ VL+VDDD+ +L +L +L+ EVT+ +A+ ++R K +D+VI+D +MP M+
Sbjct: 4 INVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIVR--KTTFDMVITDFSMPGMN 61
Query: 78 GFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
G +L V L DLPV+M++ + + + G C L KP+ + L +H R+
Sbjct: 62 GLELAAAVKELHPDLPVMMVTCEVTSDLIEMATDVGICRVLDKPVNVGRLLADIRHFSRR 121
Query: 137 K 137
K
Sbjct: 122 K 122
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 171 (65.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 53/171 (30%), Positives = 90/171 (52%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+R+L+V+DD K +E ML + V L + + L + D YD+++ D+N+PDM+
Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAK-LYD-YDLILLDINLPDMN 58
Query: 78 GFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL-RNIWQHVFR 135
G ++L + + ++ P++++S +T +KG GA DYL KP +EL I + R
Sbjct: 59 GHEVLRQLRMSRIETPILILSGVDDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRR 118
Query: 136 KKIHEVRDIENIEGFESIHMTRSGSDQSVDG-PL-LTGED-----LTSVRK 179
K H I G S+++ V+G P+ LTG++ L S+RK
Sbjct: 119 SKGHSQSVIRT--GKISVNL--DAKTVEVEGQPVHLTGKEYQMLELLSLRK 165
>UNIPROTKB|Q5Z5I4 [details] [associations]
symbol:GLK1 "Probable transcription factor GLK1"
species:39947 "Oryza sativa Japonica Group" [GO:0010638 "positive
regulation of organelle organization" evidence=IGI] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0045893 GO:GO:0003677 EMBL:AP008212 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AP005688 EMBL:AK061946 EMBL:AK065184
EMBL:AK098909 EMBL:AK122161 RefSeq:NP_001057583.2 UniGene:Os.3340
ProteinModelPortal:Q5Z5I4 STRING:Q5Z5I4
EnsemblPlants:LOC_Os06g24070.1 GeneID:4340977 KEGG:osa:4340977
Gramene:Q5Z5I4 eggNOG:NOG283574 HOGENOM:HOG000237698 OMA:IDSLTRH
ProtClustDB:CLSN2696175 GO:GO:0010638 Uniprot:Q5Z5I4
Length = 455
Score = 185 (70.2 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 35/72 (48%), Positives = 51/72 (70%)
Query: 181 KDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLT 240
++AE+RH + KKA+V W+ +LH++FV+AV Q+G DK P +IL++M + LT
Sbjct: 162 QEAESRHKSSS-KSSHGKKKAKVDWTPELHRRFVQAVEQLGIDKAVPSRILEIMGIDSLT 220
Query: 241 RENVASHLQKYR 252
R N+ASHLQKYR
Sbjct: 221 RHNIASHLQKYR 232
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 166 (63.5 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 45/154 (29%), Positives = 84/154 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LVVDDD + ++L +L+ ++ G AL+ +RE + D+V+ D+ +P M+G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
+ + + +P++M++ +T V+ G++ GA DY++KP + KEL + R+
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRND 124
Query: 139 HEVRDIENIEGFE---SIH-MTRSGSDQSVDGPL 168
E ++ +I E H +TR+G S+ PL
Sbjct: 125 DEPAEMLSIADVEIDVPAHKVTRNGEQISLT-PL 157
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 162 (62.1 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 37/118 (31%), Positives = 66/118 (55%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VL VDD ++ +++ L+ YEV T R+AL+ + +K +D++ISDVNMP M G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALA--KAQKARFDVIISDVNMPVMTG 66
Query: 79 FKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
F+ ++ V ++ P++M++ + + +G GA +L+KP + L Q V
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 162 (62.1 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 37/118 (31%), Positives = 66/118 (55%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VL VDD ++ +++ L+ YEV T R+AL+ + +K +D++ISDVNMP M G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALA--KAQKARFDVIISDVNMPVMTG 66
Query: 79 FKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
F+ ++ V ++ P++M++ + + +G GA +L+KP + L Q V
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124
>TIGR_CMR|GSU_1495 [details] [associations]
symbol:GSU_1495 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
Uniprot:Q74D24
Length = 458
Score = 183 (69.5 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 44/122 (36%), Positives = 73/122 (59%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ VLVVDD+L+ + L +L + Y V A +AL+ L ERK YD+VISDV MP +D
Sbjct: 3 IHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACL-ERKT-YDLVISDVKMPGLD 60
Query: 78 GFKLLEHVGLEM--DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
G LL + EM D V++M+ + ++ ++ GA DY+ KP +++E++ + ++
Sbjct: 61 GITLLGRIK-EMTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKILARNALE 119
Query: 136 KK 137
K+
Sbjct: 120 KR 121
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 161 (61.7 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 42/123 (34%), Positives = 64/123 (52%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 161 (61.7 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 46/180 (25%), Positives = 91/180 (50%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLL--------RERKD-GYDIVI 68
L VL VDD + K++E++L+ S +VTT AL L KD ++++
Sbjct: 24 LHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLKDLKVNLIV 83
Query: 69 SDVNMPDMDGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
+D +MP + G+ LL+ + ++PV++MS + R+ + ++ GA ++LLKP+++ +
Sbjct: 84 TDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLAD 143
Query: 126 LRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDAEN 185
++ I Q + R + E + + + + S S D + + S R + ++EN
Sbjct: 144 VKRIKQLIMRNEAEECKILSH-SNKRKLQEDSDTSSSSHDDTSIK-DSSCSKRMKSESEN 201
>TIGR_CMR|CPS_1750 [details] [associations]
symbol:CPS_1750 "transcriptional regulatory protein CpxR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0009636 "response to
toxic substance" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07662 RefSeq:YP_268481.1
ProteinModelPortal:Q484N4 STRING:Q484N4 GeneID:3518457
KEGG:cps:CPS_1750 PATRIC:21466667
BioCyc:CPSY167879:GI48-1820-MONOMER Uniprot:Q484N4
Length = 242
Score = 170 (64.9 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 34/107 (31%), Positives = 67/107 (62%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L++DDD ++L + L+ +++VT+C A L + D +D+++ DV MP ++GF
Sbjct: 11 ILLIDDDAELSELLTEYLESENFKVTSC--LDGASGLAKAFDDSFDLILLDVMMPILNGF 68
Query: 80 KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
++L+ +G P++M++ G+ + + G++ GA DYL KP + +EL
Sbjct: 69 EVLKALGGNHKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHREL 115
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 125 (49.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/76 (30%), Positives = 50/76 (65%)
Query: 65 DIVISDVNMPDMDGFKLLEHV-GLEM--DLPVIMMSVDGETSRVMKGVQHGACDYLLKPI 121
+++I+D MP M G+ LL+ V G D+PV++MS + +R+ + ++ GA ++ LKP+
Sbjct: 75 NLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLKPV 134
Query: 122 RMKELRNIWQHVFRKK 137
++ +++ + H+ ++K
Sbjct: 135 KLADMKKLKSHLLKRK 150
Score = 91 (37.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYD 65
VL VDD L K++E +LK SY+VTT AL LL R +G D
Sbjct: 12 VLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDD 57
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 158 (60.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 38/120 (31%), Positives = 68/120 (56%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLL-RERKDGYDIVISDVNMPDM 76
+ VL VDD ++ K+L+ Y VTT A AL LL +++I+D MP M
Sbjct: 50 MHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVNMIITDYWMPGM 109
Query: 77 DGFKLLEHV--GLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
G++LL+ V ++ ++PV++MS + +R+ + ++ GA D+LLKP+R ++ + +
Sbjct: 110 TGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDVSRLCSRI 169
>TIGR_CMR|GSU_1320 [details] [associations]
symbol:GSU_1320 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
HSSP:P06143 RefSeq:NP_952373.2 GeneID:2686471 KEGG:gsu:GSU1320
PATRIC:22025417 ProtClustDB:CLSK828298
BioCyc:GSUL243231:GH27-1307-MONOMER Uniprot:Q74DJ6
Length = 461
Score = 179 (68.1 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 39/110 (35%), Positives = 63/110 (57%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RVL+VDDD++ ++LE L++ Y+V T G + L L ER +V++D+ MP M G
Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPA--LVVTDLKMPGMGG 67
Query: 79 FKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
F+LL+ + G D VI+++ G + ++ GA DY+ KP L+
Sbjct: 68 FRLLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALK 117
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 156 (60.0 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 14 NPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLL----RERKDGYD---- 65
+P L VL VDD K +E++L+ S +VT A AL L E+ G++
Sbjct: 21 SPDPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKV 80
Query: 66 -IVISDVNMPDMDGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI 121
++++D +MP M G++LL+ + ++PV++MS + R+ + ++ GA D+LLKP+
Sbjct: 81 NLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPV 140
Query: 122 RM---KELRNIWQHV----FRKKIHEVRDIENIEGFESIH 154
++ K LR+ V F K I + R++E E +H
Sbjct: 141 KLSDVKRLRDSLMKVEDLSFTKSIQK-RELET-ENVYPVH 178
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 155 (59.6 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 35/111 (31%), Positives = 64/111 (57%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD A +++E LK +Y+VT R+AL L ++ +D +++D NMP MDG
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDG 61
Query: 79 FKLLEHV-GLE--MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L++ + G+ M P+IM++ + +G GA +++KP ++L
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKL 112
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 155 (59.6 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 35/111 (31%), Positives = 64/111 (57%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD A +++E LK +Y+VT R+AL L ++ +D +++D NMP MDG
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDG 61
Query: 79 FKLLEHV-GLE--MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L++ + G+ M P+IM++ + +G GA +++KP ++L
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKL 112
>TIGR_CMR|CPS_4597 [details] [associations]
symbol:CPS_4597 "transcriptional regulatory protein OmpR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0007234 "osmosensory signaling via
phosphorelay pathway" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07659 ProtClustDB:PRK09468
RefSeq:YP_271244.1 ProteinModelPortal:Q47VC8 SMR:Q47VC8
STRING:Q47VC8 GeneID:3519604 KEGG:cps:CPS_4597 PATRIC:21472017
OMA:AANSEQM BioCyc:CPSY167879:GI48-4606-MONOMER Uniprot:Q47VC8
Length = 240
Score = 159 (61.0 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 44/163 (26%), Positives = 84/163 (51%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVVDDD+ +LE+ L + + V + + + + L ER++ + +++ D+ +P DG
Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGFTVRSAANS-EQMDRLLEREN-FHLLVLDLMLPGEDG 64
Query: 79 FKLLEHVGLEMD-LPVIMMSVDG-ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
+ + + +P++M++ G E R++ G++ GA DY+ KP +EL + V R+
Sbjct: 65 LSICRRLRQNSNNIPIVMLTAKGDEVDRII-GLELGADDYMPKPFNPRELLARIKAVLRR 123
Query: 137 KIHEVRDI----ENIEGFESIHM---TRSGSDQSVDGPLLTGE 172
+ E EN+ F H+ TR + PL +GE
Sbjct: 124 RTQEAPGAPALEENVISFGGYHLNLATREMQKDDISMPLTSGE 166
Score = 42 (19.8 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 469 IVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAAQRNINWGVGSSLTSLDED------LQL 522
+V H P EP++R + +NL+ D A +R+I+ V L+ED LQ
Sbjct: 173 LVTH-PREPLSR------DKLMNLARGRDYSALERSIDVQVSRLRRMLEEDPAKPRYLQT 225
Query: 523 CWLQGDCF 530
W G F
Sbjct: 226 VWGLGYVF 233
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 153 (58.9 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 36/122 (29%), Positives = 68/122 (55%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARD---ALSLLRERKDGYDIVISDVNMPD 75
RVL+VDD +++ +L K YEV G A + A+ + +E K D+V D+ MP+
Sbjct: 4 RVLIVDDAAFMRMMIKNILVKNGYEVV--GEAENGAQAVEMYKELKP--DVVTMDITMPE 59
Query: 76 MDGFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
MDG + + + ++ + +IM S G+ + VM+ +Q GA D+++KP + + ++
Sbjct: 60 MDGIQAVREIKKIDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQQDRILQAFEKTL 119
Query: 135 RK 136
++
Sbjct: 120 KR 121
>TIGR_CMR|DET_0135 [details] [associations]
symbol:DET_0135 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483
RefSeq:YP_180885.1 ProteinModelPortal:Q3ZA64 STRING:Q3ZA64
GeneID:3230499 KEGG:det:DET0135 PATRIC:21607359 OMA:CYNLAKE
ProtClustDB:CLSK837603 BioCyc:DETH243164:GJNF-135-MONOMER
Uniprot:Q3ZA64
Length = 230
Score = 162 (62.1 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 44/134 (32%), Positives = 70/134 (52%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVV+DD ++L L K Y++ AL + R K +VI DV +P MDG
Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPS--LVILDVMLPGMDG 62
Query: 79 FKLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
F+L + E +P++M++ ET +V G++ GA DYL KP MKEL + + R+
Sbjct: 63 FELCRLIRAESSVPILMLTARSSETDKV-NGLEVGADDYLSKPFGMKELLARMRALLRRS 121
Query: 138 IHEVRDIENIEGFE 151
+ E + G +
Sbjct: 122 QMQNSQPEPVSGLK 135
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 152 (58.6 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 45/154 (29%), Positives = 83/154 (53%)
Query: 10 NDTFN---PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLR---ERKD- 62
NDT + P L VL VDD + K +E++L+ S +VT A AL L E
Sbjct: 14 NDTSSLASPKLLHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSS 73
Query: 63 -GYD-----IVISDVNMPDMDGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGA 113
G++ ++++D +MP M G++LL+ + ++PV++MS + R+ + ++ GA
Sbjct: 74 VGFEDLKINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGA 133
Query: 114 CDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENI 147
D+LLKP+++ +++ + + + E R +NI
Sbjct: 134 EDFLLKPVKLADVKRLRDSLMKA---EERAFKNI 164
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 173 (66.0 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 37/109 (33%), Positives = 62/109 (56%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+LVVDDD++ IL+ +L+ Y V R AL +RE+ +D+V+ DV M +MDG
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMDGI 65
Query: 80 KLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
L+ + L +PV++M+ ++ ++ GA DYL+KP+ L+
Sbjct: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 151 (58.2 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 39/117 (33%), Positives = 60/117 (51%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
VLVVDD ++ L + + VT AL L D D+++SD MPDM G+
Sbjct: 6 VLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFLDSEHD-VDMIVSDYCMPDMTGY 64
Query: 80 KLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
LL V LPV++ S D R+ K + GA DY+LKP+++ ++ I +++
Sbjct: 65 NLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDVPRIMKYI 121
>TIGR_CMR|CPS_2786 [details] [associations]
symbol:CPS_2786 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_269498.1
ProteinModelPortal:Q480M1 STRING:Q480M1 GeneID:3518447
KEGG:cps:CPS_2786 PATRIC:21468611 ProtClustDB:CLSK757256
BioCyc:CPSY167879:GI48-2847-MONOMER Uniprot:Q480M1
Length = 243
Score = 163 (62.4 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 38/110 (34%), Positives = 65/110 (59%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+R+L+V+DD + L++ L + + V L+R L+L +D+VI D+ +PD+D
Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDH--LSRGKLALTALAVPSHDMVILDLGLPDID 58
Query: 78 GFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G +L+ + + DLPVI+++ +KG+ +GA DYL KP M+EL
Sbjct: 59 GLLVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQEL 108
>TIGR_CMR|BA_0571 [details] [associations]
symbol:BA_0571 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:P08402 RefSeq:NP_843105.1
RefSeq:YP_017194.1 RefSeq:YP_026818.1 ProteinModelPortal:Q81YR2
DNASU:1087909 EnsemblBacteria:EBBACT00000010289
EnsemblBacteria:EBBACT00000017976 EnsemblBacteria:EBBACT00000019549
GeneID:1087909 GeneID:2816056 GeneID:2852340 KEGG:ban:BA_0571
KEGG:bar:GBAA_0571 KEGG:bat:BAS0540 OMA:TQQTIRY
ProtClustDB:CLSK915864 BioCyc:BANT260799:GJAJ-600-MONOMER
BioCyc:BANT261594:GJ7F-626-MONOMER Uniprot:Q81YR2
Length = 223
Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 46/152 (30%), Positives = 83/152 (54%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCS-YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
+R+LVV+D+ + L+ + ++L C +EV T D L L + YD ++ DV MP+M
Sbjct: 1 MRLLVVEDNASLLESIVQIL--CDEFEVDTALNGEDGLFLALQNI--YDAILLDVMMPEM 56
Query: 77 DGFKLLEHVGLE-MDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
DGF++++ + E ++ PV+ ++ D RV KG+ G DY++KP + EL+ + +
Sbjct: 57 DGFEVIQKIRDEKIETPVLFLTARDSLEDRV-KGLDFGGDDYIVKPFQAPELKARIRALL 115
Query: 135 RKKIHEVRDIENIEGFESIHMTRSGSDQSVDG 166
R+ + + I ++ I + D VDG
Sbjct: 116 RRS-GSLTTKQTIR-YKGIELFGKDKDVQVDG 145
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 36/111 (32%), Positives = 66/111 (59%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-YDIVISDVNMPDM 76
++VL+VDD + +++ + S+EV A + L L + +G +D++ DVNMP M
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEE---AVNGLEALEKVLNGEFDLMTVDVNMPKM 57
Query: 77 DGFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
DG+ + V + + LPVI++S + + +KG+Q GA YL+KP+ +++
Sbjct: 58 DGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 34/123 (27%), Positives = 67/123 (54%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-YDIVISDVNMPDM 76
+++L+VDD +I++ +L+ + T A D L+ L K G +D V++D NMP M
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQ--EADDGLTALPMLKKGDFDFVVTDWNMPGM 66
Query: 77 DGFKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
G LL+++ + +L PV+M++ + + ++++ Q G Y++KP L+ +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 134 FRK 136
F +
Sbjct: 127 FER 129
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 36/111 (32%), Positives = 66/111 (59%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-YDIVISDVNMPDM 76
++VL+VDD + +++ + S+EV A + L L + +G +D++ DVNMP M
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEE---AVNGLEALEKVLNGEFDLMTVDVNMPKM 57
Query: 77 DGFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
DG+ + V + + LPVI++S + + +KG+Q GA YL+KP+ +++
Sbjct: 58 DGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 34/123 (27%), Positives = 67/123 (54%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-YDIVISDVNMPDM 76
+++L+VDD +I++ +L+ + T A D L+ L K G +D V++D NMP M
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQ--EADDGLTALPMLKKGDFDFVVTDWNMPGM 66
Query: 77 DGFKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
G LL+++ + +L PV+M++ + + ++++ Q G Y++KP L+ +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 134 FRK 136
F +
Sbjct: 127 FER 129
>UNIPROTKB|Q4KG71 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:220664 "Pseudomonas protegens Pf-5"
[GO:0007155 "cell adhesion" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0030092 KO:K10943 OMA:FQMIIDT ProtClustDB:CLSK866333
RefSeq:YP_258762.1 ProteinModelPortal:Q4KG71 STRING:Q4KG71
GeneID:3477220 KEGG:pfl:PFL_1636 PATRIC:19872501
BioCyc:PFLU220664:GIX8-1644-MONOMER Uniprot:Q4KG71
Length = 468
Score = 171 (65.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 38/113 (33%), Positives = 65/113 (57%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
++VL+V+DD A + L L ++ G A +AL + + + +V+SDVNMP MD
Sbjct: 3 IKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAVAA--EPFSLVVSDVNMPGMD 60
Query: 78 GFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
G +LL + + LPV++M+ G R ++ ++ GA DYL+KP + L ++
Sbjct: 61 GHQLLGLLRARQPQLPVLLMTAHGAVERAVEAMRQGAADYLVKPFEPRALLDL 113
>UNIPROTKB|P0A5Z6 [details] [associations]
symbol:prrA "Transcriptional regulatory protein PrrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000287 "magnesium
ion binding" evidence=IDA] [GO:0005509 "calcium ion binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0044110 "growth involved in
symbiotic interaction" evidence=IDA] [GO:0052572 "response to host
immune response" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005829 GO:GO:0005886
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0000287 GO:GO:0003677
GO:GO:0005509 GO:GO:0052572 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815 PIR:D70783
RefSeq:NP_215418.1 RefSeq:NP_335359.1 RefSeq:YP_006514256.1
PDB:1YS6 PDB:1YS7 PDBsum:1YS6 PDBsum:1YS7 ProteinModelPortal:P0A5Z6
SMR:P0A5Z6 DIP:DIP-29035N PhosSite:P12061589
EnsemblBacteria:EBMYCT00000002159 EnsemblBacteria:EBMYCT00000072508
GeneID:13318807 GeneID:885209 GeneID:926241 KEGG:mtc:MT0926
KEGG:mtu:Rv0903c KEGG:mtv:RVBD_0903c PATRIC:18123784
TubercuList:Rv0903c KO:K07671 OMA:VDDRISG ProtClustDB:CLSK790822
EvolutionaryTrace:P0A5Z6 GO:GO:0044110 Uniprot:P0A5Z6
Length = 233
Score = 160 (61.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 39/109 (35%), Positives = 61/109 (55%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RVLVVDDD L LE+ L+ +EV T +AL E + D ++ D+NMP +DG
Sbjct: 9 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRP--DAIVLDINMPVLDG 66
Query: 79 FKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
++ + ++ D+PV ++S + G++ GA DYL+KP + EL
Sbjct: 67 VSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAEL 115
>TAIR|locus:2148720 [details] [associations]
symbol:PHL1 "AT5G29000" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:AC018632 EMBL:BT002344 EMBL:AY085154 IPI:IPI00527102
IPI:IPI00527253 IPI:IPI00891441 RefSeq:NP_001078629.1
RefSeq:NP_001119299.1 RefSeq:NP_568512.3 RefSeq:NP_851090.1
UniGene:At.26183 ProteinModelPortal:Q8GUN5 SMR:Q8GUN5 PRIDE:Q8GUN5
EnsemblPlants:AT5G29000.2 GeneID:833026 KEGG:ath:AT5G29000
TAIR:At5g29000 eggNOG:NOG275266 InParanoid:Q8GUN5 OMA:DSSSHNP
PhylomeDB:Q8GUN5 ProtClustDB:CLSN2680328 Genevestigator:Q8GUN5
Uniprot:Q8GUN5
Length = 413
Score = 169 (64.5 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 41/123 (33%), Positives = 71/123 (57%)
Query: 173 DLTSVRKRK--DAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIG-FDKVGPKK 229
D+T+ ++++ +E++ R+ + +T K R+ W+ +LH+ FV+AVNQ+G ++ PK
Sbjct: 202 DITANQQQQMVSSEDQLSGRNSSSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKA 261
Query: 230 ILDLMNVPWLTRENVASHLQKYRLYLTRLQKDELKTSVGGIKQKDSPSKDSAASFGIQNS 289
+L L+N P LT +V SHLQKYR T K E G ++K S + S ++ S
Sbjct: 262 VLKLLNNPGLTIYHVKSHLQKYR---TARYKPETSEVTGEPQEKKMTSIEDIKSLDMKTS 318
Query: 290 ITV 292
+ +
Sbjct: 319 VEI 321
>UNIPROTKB|Q48GE0 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:264730 "Pseudomonas syringae pv.
phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
Length = 471
Score = 170 (64.9 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ VL+V+DD + + L + L+ Y G A +AL + + +VISDVNMP MD
Sbjct: 3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPGMD 60
Query: 78 GFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G +LL + LPV++M+ G R + ++ GA DYL+KP K L
Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKAL 110
>UNIPROTKB|Q884Y0 [details] [associations]
symbol:fleR "Sigma-54 dependent transcriptional
regulator/response regulator FleR" species:223283 "Pseudomonas
syringae pv. tomato str. DC3000" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0030092 "regulation of flagellum
assembly" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0001539 GO:GO:0030092 KO:K10943 OMA:FQMIIDT
ProtClustDB:CLSK866333 RefSeq:NP_791779.1 HSSP:P41789
ProteinModelPortal:Q884Y0 GeneID:1183601 KEGG:pst:PSPTO_1956
PATRIC:19995186 BioCyc:PSYR223283:GJIX-1996-MONOMER Uniprot:Q884Y0
Length = 471
Score = 170 (64.9 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ VL+V+DD + + L + L+ Y G A +AL + + +VISDVNMP MD
Sbjct: 3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPGMD 60
Query: 78 GFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G +LL + LPV++M+ G R + ++ GA DYL+KP K L
Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKAL 110
>TIGR_CMR|CJE_1397 [details] [associations]
symbol:CJE_1397 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_179383.1
ProteinModelPortal:Q5HTK2 STRING:Q5HTK2 GeneID:3231903
KEGG:cjr:CJE1397 PATRIC:20044596 OMA:CREIREK ProtClustDB:CLSK879174
BioCyc:CJEJ195099:GJC0-1424-MONOMER Uniprot:Q5HTK2
Length = 223
Score = 157 (60.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 40/131 (30%), Positives = 74/131 (56%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ VL+++DD + ++L + L + + ++T + AL++ + GYD +I D+ +P +D
Sbjct: 2 INVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQ---GYDCLILDLTLPGID 58
Query: 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL-RNIWQHVFRK 136
G ++ + + ++P+I+ S G+ S + G+Q GA DYL KP KE+ I + R
Sbjct: 59 GLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRT 118
Query: 137 KIHEVRDIENI 147
K E + ENI
Sbjct: 119 KRVEHTNNENI 129
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 173 (66.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 43/139 (30%), Positives = 74/139 (53%)
Query: 10 NDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVIS 69
+D ++P+ +R+LV DDD KIL +LKK Y VT A + + + YD+V++
Sbjct: 152 SDEYSPSKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLT 211
Query: 70 DVNMPDMDGFKLLEHVG---LEMDLPVIMMSVDGETSRVMKG-VQHGACDYLLKPIRM-- 123
DV MP + GF LL+ + + +PVI+MS + ++ G D+L KPI
Sbjct: 212 DVMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPIAKEL 271
Query: 124 --KELRNIWQHVFRKKIHE 140
K++ + Q +++++ E
Sbjct: 272 LKKKIDTVLQSIWQRRKEE 290
>TIGR_CMR|GSU_2946 [details] [associations]
symbol:GSU_2946 "DNA-binding heavy metal response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
Uniprot:Q748Q5
Length = 223
Score = 156 (60.0 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 51/173 (29%), Positives = 87/173 (50%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+RVL+++D+ L+K + + T D L L R + YD++I D+ +P D
Sbjct: 1 MRVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLART--ENYDLIILDIMLPGRD 58
Query: 78 GFKLLEHVGLE-MDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
G+++LE + E ++PVI +S D RV +G++ GA DYL+KP EL + + R
Sbjct: 59 GWEVLEELRKEGSEVPVIYLSARDAVHDRV-RGLELGADDYLVKPFAFSELLARARTILR 117
Query: 136 KKIHEVRDIENIEGFESIHMTRSGSDQSVDG-PL-LTGED--LTSVRKRKDAE 184
+ R E + + + M G +G P+ LT ++ L S+ R+ E
Sbjct: 118 RG--PSRQPERLRA-DDLEMDLVGHKARREGRPIDLTAKEFILLSLLLRRKGE 167
>TIGR_CMR|BA_1119 [details] [associations]
symbol:BA_1119 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843605.1 RefSeq:YP_017739.1 RefSeq:YP_027312.1
ProteinModelPortal:Q81TY2 DNASU:1089077
EnsemblBacteria:EBBACT00000010696 EnsemblBacteria:EBBACT00000017772
EnsemblBacteria:EBBACT00000019871 GeneID:1089077 GeneID:2819546
GeneID:2850009 KEGG:ban:BA_1119 KEGG:bar:GBAA_1119 KEGG:bat:BAS1040
OMA:EIDQHSA ProtClustDB:CLSK916099
BioCyc:BANT260799:GJAJ-1116-MONOMER
BioCyc:BANT261594:GJ7F-1167-MONOMER Uniprot:Q81TY2
Length = 234
Score = 158 (60.7 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 42/151 (27%), Positives = 76/151 (50%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+L+VDD+ A L++L +L+K + +TT A ALSL ++ + YD++I DV +P G
Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQ--NDYDLIILDVMLPGQSG 63
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
F + + + D P+ ++ + G HGA DY+ KP E+ + R+ +
Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123
Query: 139 HEVRDIE---NIEGFESIHMTRSGSDQSVDG 166
+V E + F + R ++ +V+G
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNG 154
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 146 (56.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 33/123 (26%), Positives = 66/123 (53%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-YDIVISDVNMPDM 76
+++L+VDD +I++ +L+ + T A D L+ L + G +D +++D NMP M
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGF--TNTSEADDGLTALPMLQSGAFDFLVTDWNMPGM 58
Query: 77 DGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
G LL V + LPV+M++ + + ++++ Q G Y++KP + L+ + +
Sbjct: 59 TGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 134 FRK 136
F +
Sbjct: 119 FER 121
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 146 (56.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 32/110 (29%), Positives = 60/110 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD +L ++ +K Y+ AL +++ KD D+V+ D+ +P MDG
Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVK--KDNPDLVVLDMKIPGMDG 61
Query: 79 FKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
++L+HV ++ + VI+M+ GE + + GA + KP + E+R
Sbjct: 62 IEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIR 111
>TAIR|locus:2026739 [details] [associations]
symbol:AT1G69580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002684 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 EMBL:AC021046 IPI:IPI00846148
RefSeq:NP_001077798.1 UniGene:At.52449 ProteinModelPortal:A8MSE5
SMR:A8MSE5 PRIDE:A8MSE5 EnsemblPlants:AT1G69580.2 GeneID:843294
KEGG:ath:AT1G69580 TAIR:At1g69580 eggNOG:NOG249461 OMA:MEINNNA
PhylomeDB:A8MSE5 ProtClustDB:CLSN2699064 ArrayExpress:A8MSE5
Genevestigator:A8MSE5 Uniprot:A8MSE5
Length = 337
Score = 165 (63.1 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 41/125 (32%), Positives = 67/125 (53%)
Query: 196 SSTKKARVVWSIDLHQKFVKAVNQIGF-DKVGPKKILDLMNVPWLTRENVASHLQKYRLY 254
S+ K R+ W+ DLH KF++AVNQ+G +K PK ++ +M +P LT ++ SHLQKYRL
Sbjct: 30 STDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRLG 89
Query: 255 LT-RLQKDELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQ 313
+ + ++L+ S Q+ DS G S+T + N + G + + + +
Sbjct: 90 KSMKFDDNKLEVSSASENQEVESKNDSRDLRGC--SVTEENSNPAKDRGLQITEALQMQM 147
Query: 314 NVDAK 318
V K
Sbjct: 148 EVQKK 152
>TIGR_CMR|CHY_2567 [details] [associations]
symbol:CHY_2567 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483 RefSeq:YP_361360.1
ProteinModelPortal:Q3A924 SMR:Q3A924 STRING:Q3A924 GeneID:3728531
KEGG:chy:CHY_2567 PATRIC:21278183
BioCyc:CHYD246194:GJCN-2566-MONOMER Uniprot:Q3A924
Length = 236
Score = 158 (60.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 37/126 (29%), Positives = 70/126 (55%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD+ + +++ L K YEV T R+AL+ + K D+++ D MP+M G
Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKP--DLIVLDWMMPEMSG 61
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL----RNIWQHVF 134
++L + + +P+IM++ E + G + G DY++KP ++EL + I + +
Sbjct: 62 IEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLE 121
Query: 135 RKKIHE 140
K I+E
Sbjct: 122 AKTINE 127
>TAIR|locus:2172394 [details] [associations]
symbol:MYR1 "myb-related protein 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002688 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB012246
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00538966 RefSeq:NP_197325.1 RefSeq:NP_974798.1
UniGene:At.7556 ProteinModelPortal:Q9FK47 SMR:Q9FK47
EnsemblPlants:AT5G18240.1 EnsemblPlants:AT5G18240.4 GeneID:831942
KEGG:ath:AT5G18240 TAIR:At5g18240 InParanoid:Q9FK47 OMA:LETHTRT
PhylomeDB:Q9FK47 ProtClustDB:CLSN2686543 Genevestigator:Q9FK47
Uniprot:Q9FK47
Length = 402
Score = 166 (63.5 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 46/124 (37%), Positives = 68/124 (54%)
Query: 171 GEDLTSVRKRKDAENRHD---DRDCGDA----SSTKKARVVWSIDLHQKFVKAVNQIGF- 222
G+ + S + + RH GD+ S+ K R+ W+ DLH++FV+AVNQ+G
Sbjct: 9 GKSILSSSRMPISSERHPFLRGNGTGDSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGG 68
Query: 223 DKVGPKKILDLMNVPWLTRENVASHLQKYRLY--LTRLQKDEL-KTSVGGIKQKDSPSKD 279
DK PK I+ +M +P LT ++ SHLQKYRL L L KTSV + +++ P D
Sbjct: 69 DKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLNGQANSSLNKTSVMTMVEENPPEVD 128
Query: 280 SAAS 283
+ S
Sbjct: 129 ESHS 132
>TIGR_CMR|GSU_0372 [details] [associations]
symbol:GSU_0372 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 PROSITE:PS00675
PROSITE:PS00676 HSSP:P10957 RefSeq:NP_951431.2 GeneID:2686674
KEGG:gsu:GSU0372 PATRIC:22023488 ProtClustDB:CLSK827784
BioCyc:GSUL243231:GH27-388-MONOMER Uniprot:Q74G75
Length = 455
Score = 167 (63.8 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 37/108 (34%), Positives = 64/108 (59%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+VDD+ +IL+ +L+ YE TT ++AL+LL ER+ +D++++D+ M M G
Sbjct: 5 ILIVDDERGQREILQTILEGERYETTTAAGGQEALALLDERE--FDVILTDLKMQGMSGM 62
Query: 80 KLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
+LLE + + +IMM+ G ++ ++ GA DYL KP+ L
Sbjct: 63 ELLERLLAADPQQCIIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTL 110
>TIGR_CMR|BA_0585 [details] [associations]
symbol:BA_0585 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843119.1
RefSeq:YP_017209.1 RefSeq:YP_026832.1 ProteinModelPortal:Q81VB2
DNASU:1087912 EnsemblBacteria:EBBACT00000008912
EnsemblBacteria:EBBACT00000015521 EnsemblBacteria:EBBACT00000021979
GeneID:1087912 GeneID:2818661 GeneID:2851974 KEGG:ban:BA_0585
KEGG:bar:GBAA_0585 KEGG:bat:BAS0554 OMA:YQTDIEY
ProtClustDB:CLSK2305400 BioCyc:BANT260799:GJAJ-614-MONOMER
BioCyc:BANT261594:GJ7F-640-MONOMER Uniprot:Q81VB2
Length = 223
Score = 155 (59.6 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 34/103 (33%), Positives = 61/103 (59%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+++L+VDD+ L++L+ L Y +AL L+ E+KD +DI++ DV MP+MD
Sbjct: 2 VKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLI-EQKD-FDIILLDVMMPNMD 59
Query: 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120
G+ + ++P+IM++ + ++KG+ GA DY+ KP
Sbjct: 60 GWDTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKP 102
>TIGR_CMR|ECH_1012 [details] [associations]
symbol:ECH_1012 "DNA-binding response regulator"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_507798.1 ProteinModelPortal:Q2GFI5
STRING:Q2GFI5 GeneID:3927952 KEGG:ech:ECH_1012 PATRIC:20577398
OMA:GISEMDS ProtClustDB:CLSK749538
BioCyc:ECHA205920:GJNR-1015-MONOMER Uniprot:Q2GFI5
Length = 265
Score = 160 (61.4 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 35/111 (31%), Positives = 62/111 (55%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD-M 76
+R+L+++DD+A K +E L + T A+D + + D YD+VI D++ P +
Sbjct: 1 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 77 DGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
DG+ +L + + +PV+++S S +KG+ +GA DY+ KP EL
Sbjct: 61 DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSEL 111
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 155 (59.6 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 34/122 (27%), Positives = 69/122 (56%)
Query: 18 LRVLVVDDDLAWLKILEKMLK-KC-SYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD 75
+++L+++DD + ++ + + C + V + R + + DI++ D+ +PD
Sbjct: 1 MKLLLIEDDAEIVDVISTIFQISCPNSRVISASSGRKGIESVESVNP--DIILLDLGLPD 58
Query: 76 MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
M+GF +L+ + D+P+I+++V G+ S V++G+ GA DY+ KP R EL + +
Sbjct: 59 MNGFDVLKQIRNFSDVPIIILTVRGDESDVVRGLTLGANDYITKPFRQMELLARVRRLLT 118
Query: 136 KK 137
KK
Sbjct: 119 KK 120
>TIGR_CMR|BA_1955 [details] [associations]
symbol:BA_1955 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_844363.1
RefSeq:YP_018600.2 ProteinModelPortal:Q81RT3 DNASU:1085997
EnsemblBacteria:EBBACT00000011147 EnsemblBacteria:EBBACT00000016377
GeneID:1085997 GeneID:2817674 KEGG:ban:BA_1955 KEGG:bar:GBAA_1955
PATRIC:18781506 OMA:FLECEGF ProtClustDB:CLSK916430
BioCyc:BANT261594:GJ7F-1959-MONOMER Uniprot:Q81RT3
Length = 228
Score = 155 (59.6 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 41/111 (36%), Positives = 64/111 (57%)
Query: 20 VLVVDDDLAWLKILEKMLKKC----SYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD 75
+L+VDDD ++ L + +C +YE GL DAL + + K D+VI D+ MP+
Sbjct: 8 ILIVDDD-PHIRELVSVFLECEGFQTYEAID-GL--DALQKINQVK--VDMVILDIMMPN 61
Query: 76 MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
MDGF + + D+P+++++ GETS+ +KG G DYL+KP EL
Sbjct: 62 MDGFDVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIEL 112
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 149 (57.5 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 56/203 (27%), Positives = 101/203 (49%)
Query: 6 SSPRNDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-- 63
SS + + +P L VL VDD K++E++LK + +VTT AL L D
Sbjct: 7 SSSLSSSSSPE-LHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGS 65
Query: 64 -------YDIVISDVNMPDMDGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGA 113
+++++D +MP + G++LL+ + ++PV++MS + R+ + + GA
Sbjct: 66 SGLKDLKVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGA 125
Query: 114 CDYLLKPIRMKELRNIWQHVFR---------KKIHEVRDIEN-IEGFESIHMTRSGSDQS 163
++LLKP+++ +++ + + + R KK+ R ++N I+ S T S S S
Sbjct: 126 EEFLLKPVKLADVKRLKELIMRGGEAEEGKTKKLSPKRILQNDIDSSPSSSST-SSSSSS 184
Query: 164 VDGPLLTGEDLTSVRKRKDAENR 186
D L +D T KR E+R
Sbjct: 185 HDVSSL--DDDTPSSKRIKLESR 205
>TIGR_CMR|CHY_1855 [details] [associations]
symbol:CHY_1855 "sigma-54 dependent transcriptional
regulator/response regulator" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
Uniprot:Q3AB09
Length = 443
Score = 164 (62.8 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 45/150 (30%), Positives = 81/150 (54%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
++VLVVDD+ + +L + L + YEV +AL L+E + + + I D+ MP +D
Sbjct: 5 IKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLKE--ETFHLAIFDIKMPGID 62
Query: 78 GFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
G +LL+ L+ +L VI+++ G + ++ GA DYL KP + EL Q + K
Sbjct: 63 GIELLQRARQLDENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAELEITLQKAYEK 122
Query: 137 KIHEVRDIENIEGFESIHMTRSGSDQSVDG 166
+ ++ + EN+ G + + + R S + + G
Sbjct: 123 R--QLLE-ENL-GMKEV-LLRDRSSKVIVG 147
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 142 (55.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 33/114 (28%), Positives = 67/114 (58%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
+++LVVDD +I++ L + ++ V +A LL + +D ++I+D NMP+M
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNED-VKVLITDWNMPEM 59
Query: 77 DGFKLLEHVGLEM---DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
+G +L++ V E D+P+IM++ +G + V+ ++ G +Y++KP + L+
Sbjct: 60 NGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLK 113
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 164 (62.8 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 46/132 (34%), Positives = 70/132 (53%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L VDDD L +LE +L + T AL+LL ER+ D++ISD+ M M+G
Sbjct: 5 KILAVDDDELSLLMLENLLADAGFAPLTAVSGAQALALL-EREH-VDLLISDLIMEGMNG 62
Query: 79 FKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
+LL+ V ++PVI+++ G ++ ++ GA DYL KP + LR Q
Sbjct: 63 LELLDRVRERYPNVPVIVVTARGSVESAVEAMRRGAYDYLAKPFNPEVLRITLQRALDYH 122
Query: 138 IHEVRDIENIEG 149
H VR+ E I G
Sbjct: 123 -HVVRENEQITG 133
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 154 (59.3 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 33/111 (29%), Positives = 63/111 (56%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTT--CGLARDALSLLRERKDGYDIVISDVNMPD 75
+++L+++DD +I++ K +V L+++ K D +I D+ +PD
Sbjct: 1 MKILIIEDDAQTTEIVKLSFKLGWPDVRLLEASSGESGLAMVETAKP--DAIILDIGLPD 58
Query: 76 MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
+ G+++L + L +LPVI++++ E S ++K + GA DYL+KP R EL
Sbjct: 59 ISGYEVLRQIRLFSELPVIILTIRNEESDIVKALSLGADDYLVKPFRQMEL 109
>TIGR_CMR|CHY_0606 [details] [associations]
symbol:CHY_0606 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_359462.1
ProteinModelPortal:Q3AEH2 STRING:Q3AEH2 GeneID:3728152
KEGG:chy:CHY_0606 PATRIC:21274355
BioCyc:CHYD246194:GJCN-606-MONOMER Uniprot:Q3AEH2
Length = 226
Score = 153 (58.9 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 37/109 (33%), Positives = 59/109 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRE-RKDGYDIVISDVNMPDMD 77
++LVV+DD K L +LK +Y+ A D + + ++ +D+VI D+N+P D
Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQ---AYDGEAAVEHFYRENFDLVILDLNLPKQD 59
Query: 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
GF +L+ + D+PVI+++ GE + G G DYL KP EL
Sbjct: 60 GFSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAEL 108
>TIGR_CMR|SO_2426 [details] [associations]
symbol:SO_2426 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
KO:K02483 RefSeq:NP_718016.2 ProteinModelPortal:Q8EEF6
GeneID:1170140 KEGG:son:SO_2426 PATRIC:23524467 OMA:CLEMSRI
ProtClustDB:CLSK906726 Uniprot:Q8EEF6
Length = 227
Score = 153 (58.9 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 46/140 (32%), Positives = 72/140 (51%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L+VDDD + L +LK +EV + L+ +R DIV+ D+ MP MDG
Sbjct: 3 RILLVDDDPLFRVWLTDVLKAQGHEVKCAVNGVEGLTCIRSFAP--DIVMLDLVMPQMDG 60
Query: 79 FKLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
F+LL+ E P++M+S D E R+ + + GA D+L KP +KEL Q + R+
Sbjct: 61 FELLQ--ARECMTPIMMLSARDNEEDRI-RSYELGADDFLTKPFSIKELLVRLQAIERRL 117
Query: 138 IHEVRDIENIEGFESIHMTR 157
+ + +E +I R
Sbjct: 118 VQRPKPPMAVEQVATIQSVR 137
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 141 (54.7 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 36/111 (32%), Positives = 60/111 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVVDD + ++ L+ YEV +DALS L D +++ISDVNMP+MDG
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNG--DKINLIISDVNMPNMDG 60
Query: 79 FKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L+ V PVIM++ + ++ +G GA +++KP + ++
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKPFQPPQM 111
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 141 (54.7 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 36/111 (32%), Positives = 60/111 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVVDD + ++ L+ YEV +DALS L D +++ISDVNMP+MDG
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNG--DKINLIISDVNMPNMDG 60
Query: 79 FKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L+ V PVIM++ + ++ +G GA +++KP + ++
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKPFQPPQM 111
>TIGR_CMR|GSU_2915 [details] [associations]
symbol:GSU_2915 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
Length = 457
Score = 163 (62.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 43/129 (33%), Positives = 74/129 (57%)
Query: 19 RVLVVDDD--LAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
++LVVDD+ + W LE+ LKK Y+V + G DAL ++RE + D+V+ D+ +P +
Sbjct: 5 KILVVDDEHLIRWS--LEQNLKKQGYDVVSAGNGEDALRIVREEQP--DLVLLDIQLPGI 60
Query: 77 DGFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
G + LE + + ++ VIM++ G + ++ GA DY+ KP + E+ +I V R
Sbjct: 61 SGLEALEKIKEYDEEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEM-SI---VIR 116
Query: 136 KKIHEVRDI 144
K + E D+
Sbjct: 117 KAL-ETSDL 124
>TIGR_CMR|SO_4477 [details] [associations]
symbol:SO_4477 "transcriptional regulatory protein CpxR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
ProtClustDB:CLSK907666 Uniprot:Q8E918
Length = 228
Score = 153 (58.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 45/162 (27%), Positives = 84/162 (51%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L++DDDL ++L ++L+ +++T + L L YD+++ DV +P ++G
Sbjct: 3 RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLELALATD--YDLILLDVMLPKLNG 60
Query: 79 FKLLEHVGLEMDLPVIMMSVDG-ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
F++L + PV+M++ G E RV+ G++ GA DYL KP +EL + + R+
Sbjct: 61 FEVLRALRQHKQTPVLMLTARGDEIDRVV-GLEIGADDYLPKPFNDRELIARIRAIIRRS 119
Query: 138 IHEVRDIENI--EGFESIHMTRSGSDQSVDGPL--LTGEDLT 175
++I + F + + S + + L LTG + T
Sbjct: 120 HLTAQEIHATPAQEFGDLRLDPSRQEAYCNEQLIILTGTEFT 161
>TIGR_CMR|APH_1099 [details] [associations]
symbol:APH_1099 "DNA-binding response regulator"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 ProtClustDB:CLSK749538 RefSeq:YP_505647.1
ProteinModelPortal:Q2GJ04 STRING:Q2GJ04 GeneID:3930636
KEGG:aph:APH_1099 PATRIC:20950956 OMA:ETMASAQ
BioCyc:APHA212042:GHPM-1105-MONOMER Uniprot:Q2GJ04
Length = 276
Score = 157 (60.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD-M 76
+R+L+++DD+A K +E L + T A+D + + D YD+VI D++ P +
Sbjct: 1 MRILLIEDDVACAKAVEASLSAEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 77 DGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
DG+ +L + + +PV+++S + +KG+ +GA DY+ KP EL
Sbjct: 61 DGYDILVKLRESGIRVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSEL 111
>TAIR|locus:2100880 [details] [associations]
symbol:AT3G04450 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00540345 RefSeq:NP_187095.2 UniGene:At.40835
ProteinModelPortal:F4J3P7 SMR:F4J3P7 PRIDE:F4J3P7
EnsemblPlants:AT3G04450.1 GeneID:819601 KEGG:ath:AT3G04450
OMA:WPDWADQ Uniprot:F4J3P7
Length = 442
Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 40/100 (40%), Positives = 58/100 (58%)
Query: 195 ASSTKKARVVWSIDLHQKFVKAVNQIG-FDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253
+S T K R+ W+ +LH+ FV+A+NQ+G ++ PK +L L+N P LT +V SHLQKYR
Sbjct: 233 SSMTSKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRT 292
Query: 254 --YLTRLQKDELKTSVGGIKQ-KDSPSKDSAASFGIQNSI 290
Y L KD + V +K +D S D S I ++
Sbjct: 293 ARYKPELSKDTEEPLVKNLKTIEDIKSLDLKTSIEITEAL 332
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 140 (54.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 32/110 (29%), Positives = 63/110 (57%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
++ VDD + +++ LK+ Y+V +DAL+ L + D+VI+D+NMP++DG
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLAGTR--VDMVITDLNMPNLDGI 62
Query: 80 KLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L++ V P++M++ + + SR +G GA +++KP + ++L
Sbjct: 63 GLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQL 112
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 140 (54.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 32/110 (29%), Positives = 63/110 (57%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
++ VDD + +++ LK+ Y+V +DAL+ L + D+VI+D+NMP++DG
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLAGTR--VDMVITDLNMPNLDGI 62
Query: 80 KLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L++ V P++M++ + + SR +G GA +++KP + ++L
Sbjct: 63 GLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQL 112
>TIGR_CMR|GSU_0776 [details] [associations]
symbol:GSU_0776 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951833.1 ProteinModelPortal:Q74F33 GeneID:2685232
KEGG:gsu:GSU0776 PATRIC:22024313 OMA:KELPIWR ProtClustDB:CLSK828021
BioCyc:GSUL243231:GH27-778-MONOMER Uniprot:Q74F33
Length = 465
Score = 162 (62.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 36/113 (31%), Positives = 62/113 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-YDIVISDVNMPDMD 77
++L+ DD+ + L+KM + +EV T L+ + DG DI++ DV MPDMD
Sbjct: 5 KILICDDEEGIRRYLQKMFQAKEFEVETFADGTSLLARIEAGTDGDADILLQDVRMPDMD 64
Query: 78 GFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
G ++L+ V L LPV++M+ G + ++ GA DY+ KP +++ +
Sbjct: 65 GIEVLKRVKKLRPSLPVVVMTAFGTIDSAVDAIKLGAYDYVTKPFPREKILGV 117
>UNIPROTKB|Q3JZR1 [details] [associations]
symbol:csrR "DNA-binding response regulator CsrR"
species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
OMA:LASVWRY ProtClustDB:CLSK634230
BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
Length = 229
Score = 152 (58.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 39/165 (23%), Positives = 85/165 (51%)
Query: 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
G ++L+++D+ + + L Y+V R+ L E KD +D+++ D+ +P+M
Sbjct: 2 GKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALE-KD-FDLILLDLMLPEM 59
Query: 77 DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
DGF++ + E ++MM+ ++ G+ GA DY++KP ++EL + +FR+
Sbjct: 60 DGFEITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRR 119
Query: 137 KIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSVRKRK 181
+ E + E + ++ + ++S + G++ S+ KR+
Sbjct: 120 QEIETKTKEKGDSGSFRDLSLNTHNRSA----MRGDEEISLTKRE 160
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 139 (54.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 32/106 (30%), Positives = 62/106 (58%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY-DIVISDVNMPDMD 77
++LVVDD + +++ + K L K + E G A + + +++ K+ DIV D+ MP+MD
Sbjct: 4 KILVVDDAM-FMRTMIKNLLKSNSEFEVIGEAENGVEAIQKYKELQPDIVTLDITMPEMD 62
Query: 78 GFKLL-EHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR 122
G + L E + ++ V++ S G+ V+ ++ GA D+++KP +
Sbjct: 63 GLEALKEIIKIDASAKVVICSAMGQQGMVLDAIKGGAKDFIVKPFQ 108
>TIGR_CMR|SO_4633 [details] [associations]
symbol:SO_4633 "transcriptional regulatory protein OmpR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07659
ProtClustDB:PRK09468 OMA:AANSEQM RefSeq:NP_720149.1 HSSP:P03025
ProteinModelPortal:Q8E8N0 SMR:Q8E8N0 GeneID:1172214
KEGG:son:SO_4633 PATRIC:23528927 Uniprot:Q8E8N0
Length = 241
Score = 153 (58.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 37/125 (29%), Positives = 72/125 (57%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVVDDD+ +LE+ L + Y+V + A + + L ER++ + +++ D+ +P DG
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANA-EQMDRLLEREN-FHLIVLDLMLPGEDG 64
Query: 79 FKLLEHVGLE-MDLPVIMMSVDG-ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
+ + + +P++M++ G E R++ G++ GA DYL KP +EL + V R+
Sbjct: 65 LSICRRLRQQGSTIPIVMLTAKGDEVDRII-GLELGADDYLPKPFNPRELLARIKAVMRR 123
Query: 137 KIHEV 141
+ +V
Sbjct: 124 QTQDV 128
>TIGR_CMR|SPO_0251 [details] [associations]
symbol:SPO_0251 "DNA-binding response regulator PetR"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 KO:K07659 RefSeq:YP_165515.1
ProteinModelPortal:Q5LX38 GeneID:3196152 KEGG:sil:SPO0251
PATRIC:23373753 OMA:DRGQAQE ProtClustDB:CLSK933195 Uniprot:Q5LX38
Length = 233
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 36/107 (33%), Positives = 58/107 (54%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+VDDD +L+K L + + VT A A +L D +D+++ DV MP DG
Sbjct: 8 LLIVDDDERIRDLLKKFLMRHGFLVTAARDAEHARRIL-SGLD-FDLIVMDVMMPGEDGV 65
Query: 80 KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L + + P+++++ GET + G++ GA DYL KP +EL
Sbjct: 66 SLTRALRQTLSTPILLLTARGETEHRIAGLEAGADDYLAKPFEPREL 112
>TIGR_CMR|GSU_3217 [details] [associations]
symbol:GSU_3217 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_954258.1 ProteinModelPortal:Q747P8 GeneID:2688316
KEGG:gsu:GSU3217 PATRIC:22029287 OMA:MERASGN ProtClustDB:CLSK829165
BioCyc:GSUL243231:GH27-3257-MONOMER Uniprot:Q747P8
Length = 501
Score = 161 (61.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 54/197 (27%), Positives = 94/197 (47%)
Query: 19 RVLVVDDD--LAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
R+LVVDD+ ++W + ML+K + V T +AL + + ++V+ D+++PDM
Sbjct: 5 RILVVDDEKLISWS--ISTMLEKAGHSVATAASGTEALQKFQNFRP--EVVLLDISLPDM 60
Query: 77 DGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
G ++L V E D+ VIM++ + + Q GA D+ KP ++ LR HV
Sbjct: 61 SGLEILARVKEENEDVTVIMITANSNADEAVTAFQRGADDFFGKPFCLETLR----HVVD 116
Query: 136 KKIHEVRDIENIEGFESIHMTRSGSDQSV--DGPLLTGEDLTSVRKRKDAENRHDDRDCG 193
K + ++ + ++ F + DQ V ++ L +V R DA+ G
Sbjct: 117 KALERMKLKKEVDIFRRERRKKGDFDQLVGRSSKMVEVFKLINVCSRTDAKTV---LITG 173
Query: 194 DASSTKKARVVWSIDLH 210
+ S T K V ++ LH
Sbjct: 174 E-SGTGKELVARAVHLH 189
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 31/120 (25%), Positives = 67/120 (55%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L +DD L+ ++ L + ++V T +AL +L + K +D++I+D+NMP+MDG
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDMLGKEK--FDLIITDLNMPEMDG 60
Query: 79 FKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
++ V + PVI+++ + + ++ + + GA ++ KP ++L + + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 32/123 (26%), Positives = 64/123 (52%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-YDIVISDVNMPDM 76
+++L+VDD +I++ +L+ + T A D + + G D +++D NMP M
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTV--EADDGTTAIPVLNSGSIDFLVTDWNMPGM 58
Query: 77 DGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
G LL HV + LPV+M++ + + ++++ Q G Y++KP + L+ + +
Sbjct: 59 TGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 134 FRK 136
F +
Sbjct: 119 FER 121
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 31/120 (25%), Positives = 67/120 (55%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L +DD L+ ++ L + ++V T +AL +L + K +D++I+D+NMP+MDG
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDMLGKEK--FDLIITDLNMPEMDG 60
Query: 79 FKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
++ V + PVI+++ + + ++ + + GA ++ KP ++L + + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TIGR_CMR|SPO_2629 [details] [associations]
symbol:SPO_2629 "C4-dicarboxylate transport
transcriptional regulatory protein" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K10126
RefSeq:YP_167839.1 ProteinModelPortal:Q5LQ67 DNASU:3194353
GeneID:3194353 KEGG:sil:SPO2629 PATRIC:23378667 OMA:TFYDKLA
ProtClustDB:CLSK751600 Uniprot:Q5LQ67
Length = 409
Score = 159 (61.0 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 38/109 (34%), Positives = 60/109 (55%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VL+VDDD A + L + L Y V T G A + DG +++SD+ MP DG
Sbjct: 4 KVLLVDDDAAVREALGQTLDLADYAVQTAGSFVAAKDHITATFDG--VIVSDIRMPGRDG 61
Query: 79 FKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
F LL + ++ DLPVI+++ +G+ ++ + GA D+L KP +L
Sbjct: 62 FHLLSYAQDIDPDLPVILLTGEGDIPMAVRAMGDGAFDFLEKPCAAADL 110
>TIGR_CMR|GSU_1003 [details] [associations]
symbol:GSU_1003 "nitrogen regulation protein NR(I)"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
HSSP:P06143 RefSeq:NP_952057.1 ProteinModelPortal:Q74EF9
GeneID:2687478 KEGG:gsu:GSU1003 PATRIC:22024778 OMA:NQVRAAD
ProtClustDB:CLSK828129 BioCyc:GSUL243231:GH27-989-MONOMER
Uniprot:Q74EF9
Length = 481
Score = 160 (61.4 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 41/128 (32%), Positives = 70/128 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRE-RKDGYDIVISDVNMPDMD 77
R+LV DD+ + +L K L+K + T LARD LR + + YD+ I D+ MP
Sbjct: 5 RILVADDEESMRWVLSKALRKKGF---TVDLARDGEEALRLIQSNEYDLAILDIKMPGFT 61
Query: 78 GFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
G +LL+ V L+ DL +++M+ + ++ ++ GA DY+ KP + + I +
Sbjct: 62 GLELLDKVRELKHDLLMVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIIE----- 116
Query: 137 KIHEVRDI 144
K+H+ R+I
Sbjct: 117 KVHKAREI 124
>UNIPROTKB|Q48ND2 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_273089.1
ProteinModelPortal:Q48ND2 STRING:Q48ND2 GeneID:3556464
KEGG:psp:PSPPH_0807 PATRIC:19970685 OMA:KLANYKF
ProtClustDB:CLSK642719 Uniprot:Q48ND2
Length = 122
Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 35/110 (31%), Positives = 60/110 (54%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
VLVVDD + +++ LK Y+V +DAL L +K ++ISDVNMP+MDG
Sbjct: 5 VLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALGKLTGQK--VHLIISDVNMPNMDGI 62
Query: 80 KLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
++ V P+IM++ + + S+ +G GA +++KP + ++
Sbjct: 63 TFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQM 112
>TAIR|locus:2031210 [details] [associations]
symbol:AT1G25550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
"nitrate transport" evidence=RCA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237574
ProtClustDB:CLSN2687960 EMBL:AF326890 EMBL:AF339707 EMBL:AF372906
EMBL:BT002674 IPI:IPI00533337 RefSeq:NP_564236.1 UniGene:At.25159
ProteinModelPortal:Q9FPE8 SMR:Q9FPE8 IntAct:Q9FPE8 STRING:Q9FPE8
PRIDE:Q9FPE8 EnsemblPlants:AT1G25550.1 GeneID:839142
KEGG:ath:AT1G25550 TAIR:At1g25550 InParanoid:Q9FPE8 OMA:ECSERTT
PhylomeDB:Q9FPE8 ArrayExpress:Q9FPE8 Genevestigator:Q9FPE8
Uniprot:Q9FPE8
Length = 344
Score = 156 (60.0 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 41/108 (37%), Positives = 59/108 (54%)
Query: 197 STKKARVVWSIDLHQKFVKAVNQIGFDKVG-PKKILDLMNVPWLTRENVASHLQKYRLYL 255
S +K R WS +LH++F+ A+ Q+G V PK+I DLM V LT + V SHLQKYRL+
Sbjct: 206 SNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLHT 265
Query: 256 TRLQKDELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGY 303
R ++T GG ++P + F + I V H+ +N Y
Sbjct: 266 RRPATPVVRT--GG----ENPQQ---RQFMVMEGIWVPSHDTTNNRVY 304
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 116 (45.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 22/77 (28%), Positives = 47/77 (61%)
Query: 65 DIVISDVNMPDMDGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI 121
+++I+D MP M G+ LL+ V +PV++MS + +R+ + ++ GA ++ LKP+
Sbjct: 73 NLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKPV 132
Query: 122 RMKELRNIWQHVFRKKI 138
++ +L + H+ + K+
Sbjct: 133 KLADLTKLKPHMMKTKL 149
Score = 77 (32.2 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYD 65
VL VDD L K++E++L+K S +VTT AL L R D D
Sbjct: 11 VLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDND 56
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 136 (52.9 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 35/116 (30%), Positives = 63/116 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCS-YEVTTCGLARDALSLL-RERKDGYDIVISDVNMPDM 76
R+L+ +D +L ++ +EV +AL LL RER D++I+D+NMPD+
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER---LDLIITDINMPDI 59
Query: 77 DGFKLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
+G +L+ V + +P+ ++S +G KG+ GA +YL+KP L+++
Sbjct: 60 NGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 136 (52.9 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 35/116 (30%), Positives = 63/116 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCS-YEVTTCGLARDALSLL-RERKDGYDIVISDVNMPDM 76
R+L+ +D +L ++ +EV +AL LL RER D++I+D+NMPD+
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER---LDLIITDINMPDI 59
Query: 77 DGFKLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
+G +L+ V + +P+ ++S +G KG+ GA +YL+KP L+++
Sbjct: 60 NGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|DET_1058 [details] [associations]
symbol:DET_1058 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_181773.1
ProteinModelPortal:Q3Z7M6 STRING:Q3Z7M6 GeneID:3229632
KEGG:det:DET1058 PATRIC:21609161 OMA:ISGWDVC ProtClustDB:CLSK837116
BioCyc:DETH243164:GJNF-1059-MONOMER Uniprot:Q3Z7M6
Length = 227
Score = 149 (57.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 31/108 (28%), Positives = 63/108 (58%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+ DD+ +IL+ L++ ++V+ ++AL+ RE D++I D+ +P++ G
Sbjct: 4 KILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENP--DLIILDLMLPEISG 61
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
+ + + E +P+IM++ E + + G++ GA DY+ KP KEL
Sbjct: 62 WDVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKEL 109
>TIGR_CMR|CPS_1426 [details] [associations]
symbol:CPS_1426 "transcriptional regulatory protein RstA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_268169.1
ProteinModelPortal:Q485U6 STRING:Q485U6 GeneID:3518469
KEGG:cps:CPS_1426 PATRIC:21466063 ProtClustDB:CLSK749833
BioCyc:CPSY167879:GI48-1507-MONOMER Uniprot:Q485U6
Length = 248
Score = 151 (58.2 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 56/208 (26%), Positives = 99/208 (47%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+V+DD+ + + L ++VTTC DA+ L++ DIV+ D +P MDG
Sbjct: 9 ILLVEDDIDLAEWIADYLIGREFKVTTCHRGDDAVDLIQSLNP--DIVLLDGMLPGMDGL 66
Query: 80 KLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
+ + V D P+IM++ D E V+ G++ GA DY+ KP+R + L + + R++
Sbjct: 67 DVCKTVRATFDNPIIMITARDEEIDEVL-GLEMGADDYITKPVRARVLLARIRGLLRRED 125
Query: 139 HE-VRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDA-ENRHDDRDCGDAS 196
D N++ + G G L+ E SV ++ + ++ D
Sbjct: 126 KSRTADKSNVQQLTDEQLESKGV-LKFSG-LVISEQARSVTLDGESIKVSSNEFDVLWFL 183
Query: 197 STKKARVVWSIDLHQKFVKAVNQIGFDK 224
+TK +VV +L F + + GFD+
Sbjct: 184 ATKAGQVVSRKELVSHF-RGFDYDGFDR 210
>TIGR_CMR|BA_4833 [details] [associations]
symbol:BA_4833 "DNA-binding response regulator PhoP"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0006796
"phosphate-containing compound metabolic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07658
RefSeq:NP_847036.1 RefSeq:YP_021478.1 RefSeq:YP_030731.1
ProteinModelPortal:Q81L01 SMR:Q81L01 DNASU:1086976
EnsemblBacteria:EBBACT00000010602 EnsemblBacteria:EBBACT00000014654
EnsemblBacteria:EBBACT00000019808 GeneID:1086976 GeneID:2814633
GeneID:2851563 KEGG:ban:BA_4833 KEGG:bar:GBAA_4833 KEGG:bat:BAS4484
OMA:LYLGRHK ProtClustDB:CLSK887707
BioCyc:BANT260799:GJAJ-4541-MONOMER
BioCyc:BANT261594:GJ7F-4695-MONOMER Uniprot:Q81L01
Length = 239
Score = 150 (57.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 41/139 (29%), Positives = 79/139 (56%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDA-LSLLRERKDGYDIVISDVNMPDMD 77
R+LVVDD+ L ++E L++ +EV T A D ++L + + D++I D+ +P MD
Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVIT---AMDGEMALQKATTERPDLIILDLMLPKMD 60
Query: 78 GFKLLEHVGLEMDL-PVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
G ++ + + L+ + P++M++ D E +V+ G++ GA DY+ KP +E+ + + R
Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVL-GLELGADDYMTKPFSPREVVARVKAILR 119
Query: 136 K-KIHEVRDIENIEGFESI 153
+ K+ + + ESI
Sbjct: 120 RTKLQQEEQVTETSDEESI 138
>TIGR_CMR|BA_4777 [details] [associations]
symbol:BA_4777 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_846982.1 RefSeq:YP_021423.1 RefSeq:YP_030680.1
ProteinModelPortal:Q81L55 DNASU:1083888
EnsemblBacteria:EBBACT00000012704 EnsemblBacteria:EBBACT00000017584
EnsemblBacteria:EBBACT00000020354 GeneID:1083888 GeneID:2815717
GeneID:2851624 KEGG:ban:BA_4777 KEGG:bar:GBAA_4777 KEGG:bat:BAS4433
OMA:DISIQEM ProtClustDB:CLSK917419
BioCyc:BANT260799:GJAJ-4490-MONOMER
BioCyc:BANT261594:GJ7F-4640-MONOMER Uniprot:Q81L55
Length = 230
Score = 149 (57.5 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 34/108 (31%), Positives = 63/108 (58%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+V+DDL+ +++EK L K ++VT + + K +D++I D+ MP +DG
Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYL--KGSFDLIILDIMMPKLDGL 62
Query: 80 KLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKEL 126
+++ + + +P++MMS D + + + G+ GA DY+ KP M EL
Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAV-GLGLGADDYICKPFSMIEL 109
>TIGR_CMR|SO_0622 [details] [associations]
symbol:SO_0622 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:Q9WYN0 RefSeq:NP_716255.1
ProteinModelPortal:Q8EJ51 GeneID:1168488 KEGG:son:SO_0622
PATRIC:23520932 OMA:PFHTQEL ProtClustDB:CLSK905847 Uniprot:Q8EJ51
Length = 224
Score = 148 (57.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 38/110 (34%), Positives = 62/110 (56%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+++L+V+D+ + LEK LK+ Y A +A L++E + YD VI D+ +PD +
Sbjct: 1 MKLLLVEDNPMLVSELEKQLKQAGYVTDITDKALEADYLVKETQ--YDCVILDIGLPDGN 58
Query: 78 GFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G +LLE + + PVIM++ + ++G GA DYL KP +EL
Sbjct: 59 GLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQEL 108
>UNIPROTKB|Q9KUA1 [details] [associations]
symbol:VC_0622 "Sensory box sensor histidine
kinase/response regulator" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF02518 Pfam:PF13188 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 163 (62.4 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 44/139 (31%), Positives = 72/139 (51%)
Query: 14 NPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNM 73
N G +LV DD+ L++L+ L+ Y V T L ++ K ++V+ D+ M
Sbjct: 766 NEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKP--ELVLLDIMM 823
Query: 74 PDMDGFKLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR-NI 129
P M G+++ E + D LP+IM++ ++ ++G + GA DYL KP +EL I
Sbjct: 824 PGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARI 883
Query: 130 WQHVFRKKIHEVRDIENIE 148
H+ K E+R IEN +
Sbjct: 884 VAHLTASKA-ELRRIENAQ 901
>TIGR_CMR|VC_0622 [details] [associations]
symbol:VC_0622 "sensory box sensor histidine
kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 Pfam:PF13188
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 163 (62.4 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 44/139 (31%), Positives = 72/139 (51%)
Query: 14 NPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNM 73
N G +LV DD+ L++L+ L+ Y V T L ++ K ++V+ D+ M
Sbjct: 766 NEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKP--ELVLLDIMM 823
Query: 74 PDMDGFKLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR-NI 129
P M G+++ E + D LP+IM++ ++ ++G + GA DYL KP +EL I
Sbjct: 824 PGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARI 883
Query: 130 WQHVFRKKIHEVRDIENIE 148
H+ K E+R IEN +
Sbjct: 884 VAHLTASKA-ELRRIENAQ 901
>TIGR_CMR|GSU_1989 [details] [associations]
symbol:GSU_1989 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 RefSeq:NP_953038.1 ProteinModelPortal:Q74BQ2
GeneID:2686140 KEGG:gsu:GSU1989 PATRIC:22026841 OMA:IARSLHY
ProtClustDB:CLSK743130 BioCyc:GSUL243231:GH27-2007-MONOMER
Uniprot:Q74BQ2
Length = 444
Score = 157 (60.3 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 41/132 (31%), Positives = 70/132 (53%)
Query: 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
GL VL+VDD+ ++L +L + V T A A +L+ R D +I+D+ MP
Sbjct: 3 GL-VLIVDDEPNAARVLSAILAGEGHTVLTASDASKAEHILKSRD--VDAIITDLRMPGR 59
Query: 77 DGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKP---IRMKEL--RNIW 130
DG +L EHV + D+PVI ++ G + + GA Y +KP +++K + R +
Sbjct: 60 DGMQLFEHVTEHLPDIPVIFLTAYGTVDSAVNAITRGAFYYFIKPPDYVKLKSMVARAVE 119
Query: 131 QHVFRKKIHEVR 142
Q ++++ E+R
Sbjct: 120 QRALKREVAELR 131
>TIGR_CMR|SPO_1892 [details] [associations]
symbol:SPO_1892 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000058489 InterPro:IPR025662
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00688
RefSeq:YP_167129.1 ProteinModelPortal:Q5LS76 DNASU:3193394
GeneID:3193394 KEGG:sil:SPO1892 PATRIC:23377117 OMA:IDNTMRR
ProtClustDB:CLSK933667 Uniprot:Q5LS76
Length = 444
Score = 157 (60.3 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 38/113 (33%), Positives = 63/113 (55%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+++ +VDD+ + + + L Y+ T A +AL +L G IVISD+ MP MD
Sbjct: 5 MKIAIVDDEQDMRQSISQWLALSGYDTETFASAEEALKVLGSEYPG--IVISDIKMPGMD 62
Query: 78 GFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI---RMKEL 126
G + L+ + G + LPVIM++ G+ ++ ++ GA D+L KP RM +L
Sbjct: 63 GMQFLKKLMGADSSLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMSDL 115
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 135 (52.6 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 32/123 (26%), Positives = 63/123 (51%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTT-CGLARDALSLLRERKDGYDIVISDVNMPDM 76
+++L+VDD +I++ +L+ + T AL +L+ K +D V++D NMP M
Sbjct: 5 MKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQ--KGDFDFVVTDWNMPGM 62
Query: 77 DGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
G LL+ + + LPV+M++ + + +++ Q G Y++KP L+ +
Sbjct: 63 QGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLKEKLDKI 122
Query: 134 FRK 136
F +
Sbjct: 123 FER 125
>TIGR_CMR|GSU_0149 [details] [associations]
symbol:GSU_0149 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 PROSITE:PS50109 HSSP:P06143 RefSeq:NP_951211.1
ProteinModelPortal:Q74GU5 GeneID:2687911 KEGG:gsu:GSU0149
PATRIC:22023046 HOGENOM:HOG000135524 OMA:ISHKFRT
ProtClustDB:CLSK827668 BioCyc:GSUL243231:GH27-183-MONOMER
Uniprot:Q74GU5
Length = 371
Score = 155 (59.6 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 42/140 (30%), Positives = 77/140 (55%)
Query: 17 GLR-VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD 75
GL+ +LVVDD+ + K LK Y V G +AL L ER G D++++DV MP
Sbjct: 12 GLKSILVVDDESVIRDLCAKALK--GYRVLQAGDGEEALRLF-ER-GGIDVILTDVMMPK 67
Query: 76 MDGFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
++G +LL + +E L VI+M+ E ++ ++ A D++ KP+ + +L+
Sbjct: 68 LNGIELLRRLKEMEPTLVVIVMTGYAEKDIILNALKADADDFITKPLNLLQLKTAVDRAL 127
Query: 135 RKKI--HEVRDIENIEGFES 152
KK+ E+ ++++++ +S
Sbjct: 128 DKKVLKEEIANLKSMDRLKS 147
>TIGR_CMR|BA_3229 [details] [associations]
symbol:BA_3229 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
KO:K02483 RefSeq:NP_845535.1 RefSeq:YP_019868.1 RefSeq:YP_029256.1
ProteinModelPortal:Q81NG7 DNASU:1083819
EnsemblBacteria:EBBACT00000008287 EnsemblBacteria:EBBACT00000017508
EnsemblBacteria:EBBACT00000020077 GeneID:1083819 GeneID:2815940
GeneID:2850665 KEGG:ban:BA_3229 KEGG:bar:GBAA_3229 KEGG:bat:BAS2999
OMA:ADNHTTP ProtClustDB:CLSK916969
BioCyc:BANT260799:GJAJ-3061-MONOMER
BioCyc:BANT261594:GJ7F-3168-MONOMER Uniprot:Q81NG7
Length = 224
Score = 147 (56.8 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 39/132 (29%), Positives = 67/132 (50%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+RVL+V+D+ IL K L Y V CG DAL + YD+++ D+ +P ++
Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMAT--YDLIVLDIMIPGIN 58
Query: 78 GFKLLEHVGLEMDLPVIMMSVDGET--SRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
G ++L+ + + +++ +T RV KG+ GA DYL+KP EL + + R
Sbjct: 59 GLQVLQKLRADNHTTSVLLLTAKDTIDDRV-KGLDLGADDYLVKPFAFDELLARIRVLMR 117
Query: 136 KKIHEVRDIENI 147
+K ++ I
Sbjct: 118 RKTGNTSNVFEI 129
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 134 (52.2 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 40/129 (31%), Positives = 71/129 (55%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLR----ERKDGY------DIV 67
L VL VDD+L K++E++LK S +VTT AL L ++ D +++
Sbjct: 20 LHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMKVNLI 79
Query: 68 ISDVNMPDMDGFKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMK 124
I+D MP M GF+LL+ V +L PV+++S + +R+ K + GA ++ KP+++
Sbjct: 80 ITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPLKLS 139
Query: 125 ELRNIWQHV 133
++ + H+
Sbjct: 140 DVEKLKCHL 148
>TAIR|locus:2095933 [details] [associations]
symbol:MYR2 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011698
ProtClustDB:CLSN2686543 IPI:IPI00524229 RefSeq:NP_001118567.1
UniGene:At.40915 ProteinModelPortal:Q9SQQ9 SMR:Q9SQQ9
EnsemblPlants:AT3G04030.3 GeneID:819558 KEGG:ath:AT3G04030
TAIR:At3g04030 InParanoid:Q9SQQ9 OMA:HITSERH PhylomeDB:Q9SQQ9
Genevestigator:Q9SQQ9 Uniprot:Q9SQQ9
Length = 394
Score = 155 (59.6 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 196 SSTKKARVVWSIDLHQKFVKAVNQIG-FDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253
S+ K R+ W+ DLH++F++AVNQ+G DK PK I+ +M +P LT ++ SHLQKYRL
Sbjct: 41 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99
>UNIPROTKB|Q7D1A5 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK800134 HSSP:P06143
RefSeq:NP_353549.1 ProteinModelPortal:Q7D1A5 SMR:Q7D1A5
STRING:Q7D1A5 GeneID:1132558 KEGG:atu:Atu0520 PATRIC:20810743
OMA:FKQITAA Uniprot:Q7D1A5
Length = 129
Score = 133 (51.9 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 35/121 (28%), Positives = 61/121 (50%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
++VL+VDD + +L L + + ++T+ G L ++ ++ + +VISD NMP M
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQP--HHLVISDFNMPKM 64
Query: 77 DGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG L V I+++ G+ + V K Q GA + L KP + ++R + V
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMRAAIEAV 124
Query: 134 F 134
F
Sbjct: 125 F 125
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 133 (51.9 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 33/123 (26%), Positives = 64/123 (52%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-YDIVISDVNMPDM 76
++VLVVDD +I++ +L+ + T A D + L + G +D V++D NMP M
Sbjct: 5 MKVLVVDDFSTMRRIVKNLLRDLGF--TNIQEADDGNTALPMLQGGDFDFVVTDWNMPGM 62
Query: 77 DGFKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
G LL+ + + +L PV++++ + + +++ Q G Y++KP L+ +
Sbjct: 63 QGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPFTAATLKTKLDKI 122
Query: 134 FRK 136
F +
Sbjct: 123 FER 125
>NCBI_NP|NP_353549.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_353549
Length = 129
Score = 133 (51.9 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 35/121 (28%), Positives = 61/121 (50%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
++VL+VDD + +L L + + ++T+ G L ++ ++ + +VISD NMP M
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQP--HHLVISDFNMPKM 64
Query: 77 DGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG L V I+++ G+ + V K Q GA + L KP + ++R + V
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMRAAIEAV 124
Query: 134 F 134
F
Sbjct: 125 F 125
>TIGR_CMR|GSU_0008 [details] [associations]
symbol:GSU_0008 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
Length = 516
Score = 156 (60.0 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRE-RKDGYDIVISDVNMP 74
+G +V +VDD+ IL+ L+ Y ARD + L ++ +D+V+ D+ MP
Sbjct: 2 SGYKVFIVDDEADIALILKLQLEDAGYRTMR---ARDGIEALDALERESFDLVLLDIRMP 58
Query: 75 DMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
MDG ++LE + DL VIMM+ G ++ ++ GA DY+ KP +++
Sbjct: 59 RMDGIEVLERIRDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMK 112
>TIGR_CMR|CPS_1260 [details] [associations]
symbol:CPS_1260 "putative nitrate/nitrite DNA-binding
response regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0035556 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 eggNOG:COG2197 HOGENOM:HOG000034813
KO:K07684 RefSeq:YP_268003.1 ProteinModelPortal:Q486L2
STRING:Q486L2 GeneID:3521261 KEGG:cps:CPS_1260 PATRIC:21465757
OMA:THKRNIK ProtClustDB:CLSK938262
BioCyc:CPSY167879:GI48-1341-MONOMER Uniprot:Q486L2
Length = 206
Score = 140 (54.3 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 36/112 (32%), Positives = 62/112 (55%)
Query: 18 LRVLVVDDDLAWLKILEKMLK--KCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD 75
++VL+VDD + + L+ L C V + AL L++ +DIV+ D+NMP+
Sbjct: 2 IKVLLVDDHPLFREGLKHRLSLDDCIEVVGEAENGKQALELIKSLD--FDIVLMDINMPE 59
Query: 76 MDGFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
MDG +LE + ++D V+M+S+ ++ ++HGA Y+LK + EL
Sbjct: 60 MDGMYVLELIKEQDLDCKVLMLSMHDNKEYILGAMRHGADGYILKDVPGAEL 111
Score = 37 (18.1 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 298 VSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDT 329
V +G + FS S V + +K L G+ +GI T
Sbjct: 118 VISGKHYFS---SEVTEILSKELAGEQRGIVT 146
>TIGR_CMR|GSU_3418 [details] [associations]
symbol:GSU_3418 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 HOGENOM:HOG000058487
RefSeq:NP_954458.1 ProteinModelPortal:Q746V0 GeneID:2686607
KEGG:gsu:GSU3418 PATRIC:22029693 OMA:LSIYSFP
ProtClustDB:CLSK2522262 BioCyc:GSUL243231:GH27-3392-MONOMER
Uniprot:Q746V0
Length = 490
Score = 155 (59.6 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 40/130 (30%), Positives = 71/130 (54%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+L+VDD+ AWL+ L L++ + + C +R + +LRE + +++ D+ MP
Sbjct: 11 ILLVDDEAAWLRSLSLTLREATGIDNIIKCSDSRQVMDILRETE--VSLILLDLTMPYFS 68
Query: 78 GFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
G LL+ +G E D+PVI++S + ++ +Q GA DY +K + + L Q F
Sbjct: 69 GTDLLQMIGQEYPDIPVIVLSGLNQVETAVRCMQLGAFDYYVKTVEKERLITGIQRAF-- 126
Query: 137 KIHEVRDIEN 146
+ E+R+ EN
Sbjct: 127 SMQEMRN-EN 135
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 153 (58.9 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 37/102 (36%), Positives = 59/102 (57%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
++V+DDD L+ L +L Y V G DA+ L G DIVI+D+NMP+M G
Sbjct: 9 IVVIDDDPYVLESLSALLVAYGYIVHPFGRGADAVHRLS--CGGIDIVITDINMPEMTGI 66
Query: 80 KLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120
++L + D+PVI+M+ E S ++ ++ GA D+++KP
Sbjct: 67 EVLRAIRKSNPDVPVILMTGYAELSVAVEAIKQGAFDFIIKP 108
>UNIPROTKB|Q9KU11 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 PIR:H82288 RefSeq:NP_230368.1
ProteinModelPortal:Q9KU11 SMR:Q9KU11 DNASU:2615728 GeneID:2615728
KEGG:vch:VC0719 PATRIC:20080557 ProtClustDB:CLSK874084
Uniprot:Q9KU11
Length = 229
Score = 146 (56.5 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 44/157 (28%), Positives = 83/157 (52%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LVV+D+ ++L +L++ Y+ A+S L E D+V+ D +P G
Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFP--DLVLLDWMLPGGSG 61
Query: 79 FKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
L++H+ E ++PV+M++ GE ++G++ GA DY+ KP KEL + V R
Sbjct: 62 INLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121
Query: 136 K----KIHEVRDIENIEGFESIHMTRSGSDQSVD-GP 167
+ + +V D++ ++ + + + +DQ +D GP
Sbjct: 122 RVTPTALEDVIDVQGLK-LDPVSHRVTANDQPLDMGP 157
>TIGR_CMR|VC_0719 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP TIGRFAMs:TIGR02154
PIR:H82288 RefSeq:NP_230368.1 ProteinModelPortal:Q9KU11 SMR:Q9KU11
DNASU:2615728 GeneID:2615728 KEGG:vch:VC0719 PATRIC:20080557
ProtClustDB:CLSK874084 Uniprot:Q9KU11
Length = 229
Score = 146 (56.5 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 44/157 (28%), Positives = 83/157 (52%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LVV+D+ ++L +L++ Y+ A+S L E D+V+ D +P G
Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFP--DLVLLDWMLPGGSG 61
Query: 79 FKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
L++H+ E ++PV+M++ GE ++G++ GA DY+ KP KEL + V R
Sbjct: 62 INLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121
Query: 136 K----KIHEVRDIENIEGFESIHMTRSGSDQSVD-GP 167
+ + +V D++ ++ + + + +DQ +D GP
Sbjct: 122 RVTPTALEDVIDVQGLK-LDPVSHRVTANDQPLDMGP 157
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 132 (51.5 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSY---EVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
VL+VDD KI+ + L++ E+ G + L++L + D+++SD+NMP+M
Sbjct: 4 VLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGDGIEGLNVLSGKS--VDLILSDINMPNM 61
Query: 77 DGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
DG + ++ P++M++ +G + + + GA D + KP +L
Sbjct: 62 DGLEFIKQARANGHKAPIVMITTEGGEDILKEAISSGASDSIKKPFTPDQL 112
>UNIPROTKB|O53894 [details] [associations]
symbol:mprA "Response regulator MprA" species:1773
"Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
transduction system" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
to stress" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0090034 "regulation of chaperone-mediated protein complex
assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
Uniprot:O53894
Length = 230
Score = 146 (56.5 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 37/110 (33%), Positives = 59/110 (53%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+R+LVVDDD A + L + L Y V +AL ++ D D ++ DV MP +D
Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIAS--DRPDALVLDVMMPRLD 60
Query: 78 GFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G ++ + G DLP+++++ S + G+ GA DYL KP ++EL
Sbjct: 61 GLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEEL 110
>TAIR|locus:2063746 [details] [associations]
symbol:AT2G03500 "AT2G03500" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006284
HOGENOM:HOG000237574 EMBL:AY060559 EMBL:AY133630 EMBL:AK221662
IPI:IPI00544167 PIR:B84449 RefSeq:NP_027544.1 UniGene:At.27373
ProteinModelPortal:Q9ZQ85 SMR:Q9ZQ85 IntAct:Q9ZQ85
EnsemblPlants:AT2G03500.1 GeneID:814878 KEGG:ath:AT2G03500
TAIR:At2g03500 eggNOG:NOG301728 InParanoid:Q9ZQ85 OMA:QSYSMLL
PhylomeDB:Q9ZQ85 ProtClustDB:CLSN2687945 ArrayExpress:Q9ZQ85
Genevestigator:Q9ZQ85 Uniprot:Q9ZQ85
Length = 432
Score = 159 (61.0 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 36/75 (48%), Positives = 49/75 (65%)
Query: 195 ASSTKKARVVWSIDLHQKFVKAVNQIGFDKVG-PKKILDLMNVPWLTRENVASHLQKYRL 253
+ S +KAR WS DLH++FV+A+ +G +V PK+I +LM V LT + V SHLQKYRL
Sbjct: 228 SQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRL 287
Query: 254 YLTRLQKDELKTSVG 268
+ TR +TS G
Sbjct: 288 H-TRRPSPSPQTSGG 301
Score = 38 (18.4 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 402 FTQLPLPGP--RHHIQVDCIQSGPSASS 427
+T P P P HH Q SG +AS+
Sbjct: 355 YTTPPPPQPLHHHHFQTFNGSSGGTAST 382
>UNIPROTKB|Q9KT84 [details] [associations]
symbol:luxO "Regulatory protein LuxO" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 155 (59.6 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 47/185 (25%), Positives = 83/185 (44%)
Query: 22 VVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKL 81
+V+D + + L ++ G RDA+ + R+ D+++ D+ +PDM G +
Sbjct: 1 MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREP--DLILLDLRLPDMTGMDV 58
Query: 82 LEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHE 140
L V + D+P++ M+ G ++ ++HGA D+L+KP LR + RK
Sbjct: 59 LYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKL 118
Query: 141 VRDIEN----IEGF-------ESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDD 189
D++N +GF ++++ T + S +TGE T K AE H
Sbjct: 119 KNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTG--KEVCAEAIHAA 176
Query: 190 RDCGD 194
GD
Sbjct: 177 SKRGD 181
Score = 43 (20.2 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 207 IDLHQKFVKAVNQIGFDKVGPKKI--LDLMNV------PWL-TRENVASHLQKYRLYLTR 257
+DL K ++ + F KVG K+ +D+ V PW +E YRLY+
Sbjct: 238 LDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIP 297
Query: 258 LQKDELK 264
L L+
Sbjct: 298 LHLPPLR 304
Score = 42 (19.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 372 FDSAIPTQPWSEVSETQFQHE 392
F A PW EV E +F+ +
Sbjct: 268 FVCATNRDPWKEVQEGRFRED 288
>TIGR_CMR|VC_1021 [details] [associations]
symbol:VC_1021 "LuxO repressor protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 155 (59.6 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 47/185 (25%), Positives = 83/185 (44%)
Query: 22 VVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKL 81
+V+D + + L ++ G RDA+ + R+ D+++ D+ +PDM G +
Sbjct: 1 MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREP--DLILLDLRLPDMTGMDV 58
Query: 82 LEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHE 140
L V + D+P++ M+ G ++ ++HGA D+L+KP LR + RK
Sbjct: 59 LYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKL 118
Query: 141 VRDIEN----IEGF-------ESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDD 189
D++N +GF ++++ T + S +TGE T K AE H
Sbjct: 119 KNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTG--KEVCAEAIHAA 176
Query: 190 RDCGD 194
GD
Sbjct: 177 SKRGD 181
Score = 43 (20.2 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 207 IDLHQKFVKAVNQIGFDKVGPKKI--LDLMNV------PWL-TRENVASHLQKYRLYLTR 257
+DL K ++ + F KVG K+ +D+ V PW +E YRLY+
Sbjct: 238 LDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIP 297
Query: 258 LQKDELK 264
L L+
Sbjct: 298 LHLPPLR 304
Score = 42 (19.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 372 FDSAIPTQPWSEVSETQFQHE 392
F A PW EV E +F+ +
Sbjct: 268 FVCATNRDPWKEVQEGRFRED 288
>UNIPROTKB|Q4GZL0 [details] [associations]
symbol:rr1 "Type A response regulator 1" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
Uniprot:Q4GZL0
Length = 231
Score = 146 (56.5 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 37/122 (30%), Positives = 72/122 (59%)
Query: 19 RVLVVDDDLAWLKILEKMLKK--C--SYEVTTCGLARDALSLLRERKDG----YDIVISD 70
RVL+VDD ++++ +L C S+ V A+ A+ L +++G D+V++D
Sbjct: 9 RVLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDMVLTD 68
Query: 71 VNMPDMDGFKLLEHV-GLE--MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
MP+M G++LL+ + L +PVI+MS + E R+ + + GA D+++KP++ K+++
Sbjct: 69 YCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQSKDVQ 128
Query: 128 NI 129
+
Sbjct: 129 RL 130
>UNIPROTKB|P76340 [details] [associations]
symbol:yedW "predicted DNA-binding response regulator in
two-component system with YedV" species:83333 "Escherichia coli
K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 TIGRFAMs:TIGR01387 KO:K02483
PIR:E64961 RefSeq:NP_416478.2 RefSeq:YP_490219.1
ProteinModelPortal:P76340 SMR:P76340 DIP:DIP-11853N IntAct:P76340
MINT:MINT-1223015 PRIDE:P76340 EnsemblBacteria:EBESCT00000004539
EnsemblBacteria:EBESCT00000015627 GeneID:12931392 GeneID:946486
KEGG:ecj:Y75_p1936 KEGG:eco:b1969 PATRIC:32119269 EchoBASE:EB3798
EcoGene:EG14045 OMA:MTYDLWH ProtClustDB:PRK11517
BioCyc:EcoCyc:G7057-MONOMER BioCyc:ECOL316407:JW5322-MONOMER
Genevestigator:P76340 Uniprot:P76340
Length = 223
Score = 145 (56.1 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 40/148 (27%), Positives = 73/148 (49%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+++L+++D+ + + + L + Y + RD L L KD Y ++I D+ +P MD
Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL--KDDYALIILDIMLPGMD 58
Query: 78 GFKLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
G+++L+ + PVI ++ D RV +G+ GA DYL+KP EL + R+
Sbjct: 59 GWQILQTLRTAKQTPVICLTARDSVDDRV-RGLDSGANDYLVKPFSFSELLARVRAQLRQ 117
Query: 137 KIHEVRDIENIEGFESIHMTRSGSDQSV 164
H + I G ++ S S ++
Sbjct: 118 H-HALNSTLEISGLRMDSVSHSVSRDNI 144
>TIGR_CMR|DET_0304 [details] [associations]
symbol:DET_0304 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_181052.1
ProteinModelPortal:Q3Z9P7 GeneID:3230335 KEGG:det:DET0304
PATRIC:21607681 OMA:KMELIAR ProtClustDB:CLSK741611
BioCyc:DETH243164:GJNF-304-MONOMER Uniprot:Q3Z9P7
Length = 223
Score = 145 (56.1 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 44/157 (28%), Positives = 79/157 (50%)
Query: 19 RVLVVDDDLAWLKILEKMLKKC--SYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
R+L+V+DD + K + E+ T + + LL E I+I D+ +PD+
Sbjct: 3 RILIVEDDFKTADAFVSIFKLTWPNAEIFTAQTGWEGIRLLEEYSP--HIIILDIGLPDI 60
Query: 77 DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
+GF+++ + D+P+++++ + V+K ++ GA D++ KP R EL + + RK
Sbjct: 61 NGFEVISEIRHFTDIPIMVITARTDELDVVKALELGANDFISKPPRKMELIARIKALIRK 120
Query: 137 KIHEVRDIENIEGFE----SIHMTRSGSDQSVDGPLL 169
K + NI F+ +IH+ S D SV LL
Sbjct: 121 KSVDDLSFGNIN-FDKIQRTIHINNSKVDLSVYESLL 156
>UNIPROTKB|P0AE88 [details] [associations]
symbol:cpxR "CpxR transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0045892
GO:GO:0045893 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:L19201
eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:M36795 EMBL:X13307
EMBL:L14579 PIR:C65197 RefSeq:NP_418348.1 RefSeq:YP_491538.1
ProteinModelPortal:P0AE88 SMR:P0AE88 DIP:DIP-47991N IntAct:P0AE88
MINT:MINT-1292432 PaxDb:P0AE88 EnsemblBacteria:EBESCT00000002313
EnsemblBacteria:EBESCT00000017066 GeneID:12933651 GeneID:948404
KEGG:ecj:Y75_p3274 KEGG:eco:b3912 PATRIC:32123337 EchoBASE:EB0019
EcoGene:EG10020 KO:K07662 OMA:YQTPVIM ProtClustDB:PRK10955
BioCyc:EcoCyc:CPXR-MONOMER BioCyc:ECOL316407:JW3883-MONOMER
Genevestigator:P0AE88 Uniprot:P0AE88
Length = 232
Score = 146 (56.5 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 48/165 (29%), Positives = 79/165 (47%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDDD +L+++L+ + V AL LL D D+++ DV MP +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL---DDSIDLLLLDVMMPKKNG 59
Query: 79 FKLLEHVGLEMDLPVIMMSVDG-ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
L+ + PVIM++ G E RV+ G++ GA DYL KP +EL + + R+
Sbjct: 60 IDTLKALRQTHQTPVIMLTARGSELDRVL-GLELGADDYLPKPFNDRELVARIRAILRRS 118
Query: 138 IHEVRDIENIEG-----FESIHMTRSGSDQSVDGPLL--TGEDLT 175
+ N G +++ + + S DG L TG + T
Sbjct: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFT 163
>TIGR_CMR|CPS_4272 [details] [associations]
symbol:CPS_4272 "sigma-54 dependent response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688 KO:K07715
RefSeq:YP_270922.1 ProteinModelPortal:Q47WA0 STRING:Q47WA0
GeneID:3519601 KEGG:cps:CPS_4272 PATRIC:21471409 OMA:DASVFIQ
BioCyc:CPSY167879:GI48-4282-MONOMER Uniprot:Q47WA0
Length = 457
Score = 154 (59.3 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 37/127 (29%), Positives = 63/127 (49%)
Query: 10 NDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVIS 69
N T ++L+VDDD + L++L L Y+V + A+ AL L+ +VIS
Sbjct: 5 NQTVTSNSAKILIVDDDPSLLRLLGIRLSAAGYDVESAANAKIALGRLQNFIP--QVVIS 62
Query: 70 DVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
D+ M MDG L E + ++ ++PV++M+ G + + G +L KP +EL +
Sbjct: 63 DLRMEGMDGMALFEQIRIQHPNIPVVIMTAHGTIPDAINATKQGVFSFLTKPFESQELLD 122
Query: 129 IWQHVFR 135
+ R
Sbjct: 123 TVEQAIR 129
>TIGR_CMR|BA_5715 [details] [associations]
symbol:BA_5715 "DNA-binding response regulator YycF"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847861.1 RefSeq:YP_022401.1 RefSeq:YP_031556.1
ProteinModelPortal:Q81JJ0 SMR:Q81JJ0 IntAct:Q81JJ0 DNASU:1085472
EnsemblBacteria:EBBACT00000008903 EnsemblBacteria:EBBACT00000016684
EnsemblBacteria:EBBACT00000023802 GeneID:1085472 GeneID:2816053
GeneID:2852841 KEGG:ban:BA_5715 KEGG:bar:GBAA_5715 KEGG:bat:BAS5319
KO:K07668 OMA:KEQESND ProtClustDB:CLSK2391406
BioCyc:BANT260799:GJAJ-5392-MONOMER
BioCyc:BANT261594:GJ7F-5568-MONOMER Uniprot:Q81JJ0
Length = 235
Score = 146 (56.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 34/111 (30%), Positives = 62/111 (55%)
Query: 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
G ++LVVDD+ IL+ L+K +E+ +A+ E + D+V+ D+ +P
Sbjct: 3 GKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQP--DMVLLDIMLPGK 60
Query: 77 DGFKLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKEL 126
DG ++ + ++P+IM++ D E +V+ G++ GA DY+ KP +EL
Sbjct: 61 DGLEVCREIRKSSEMPIIMLTAKDSEIDKVL-GLELGADDYVTKPFSTREL 110
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 57/188 (30%), Positives = 90/188 (47%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+LVVDD+ +L L + +V T G AL +L E++D D+VISD MP MDG
Sbjct: 5 LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVL-EQED-IDLVISDWRMPGMDGP 62
Query: 80 KLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL----------RN 128
+LL + LPVI+M+ ++ +++GA DY+ KP + EL R+
Sbjct: 63 QLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRD 122
Query: 129 IWQ--HVFRKKIHEVRDIENIEG----FESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKD 182
I + R ++ E + I+++ G F + +S LLTGE T
Sbjct: 123 ILKDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGKEMVAR 182
Query: 183 AENRHDDR 190
A ++H +R
Sbjct: 183 AIHKHGNR 190
>UNIPROTKB|A5U0E5 [details] [associations]
symbol:phoP "Putative two component system response
transcriptional positive regulator PhoP" species:419947
"Mycobacterium tuberculosis H37Ra" [GO:0042802 "identical protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 EMBL:CP000611
GenomeReviews:CP000611_GR HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_001282057.1 ProteinModelPortal:A5U0E5 SMR:A5U0E5
STRING:A5U0E5 PRIDE:A5U0E5 EnsemblBacteria:EBMYCT00000067475
GeneID:5215306 KEGG:mra:MRA_0767 PATRIC:18141256 OMA:KPRILDH
ProtClustDB:CLSK790716 BioCyc:MTUB419947:GJ8N-786-MONOMER
Uniprot:A5U0E5
Length = 247
Score = 146 (56.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RVLVVDD+ +++L LK +EV T AL RE + D VI DV MP MDG
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILDVMMPGMDG 79
Query: 79 FKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
F +L + + +D P + ++ + G+ G DY+ KP ++E+
Sbjct: 80 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEV 128
>UNIPROTKB|P71814 [details] [associations]
symbol:phoP "Possible two component system response
transcriptional positive regulator PhoP" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0009247 "glycolipid biosynthetic process"
evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0044315
"protein secretion by the type VII secretion system" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045892 GO:GO:0045893
GO:GO:0009405 GO:GO:0006979 GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0009247 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 GO:GO:0044315 KO:K02483
OMA:KPRILDH ProtClustDB:CLSK790716 EMBL:AL123456 PIR:H70705
RefSeq:NP_215271.1 RefSeq:YP_006514104.1 PDB:3R0J PDBsum:3R0J
ProteinModelPortal:P71814 SMR:P71814
EnsemblBacteria:EBMYCT00000002360 GeneID:13318651 GeneID:888772
KEGG:mtu:Rv0757 KEGG:mtv:RVBD_0757 PATRIC:18150200
TubercuList:Rv0757 Uniprot:P71814
Length = 247
Score = 146 (56.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RVLVVDD+ +++L LK +EV T AL RE + D VI DV MP MDG
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILDVMMPGMDG 79
Query: 79 FKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
F +L + + +D P + ++ + G+ G DY+ KP ++E+
Sbjct: 80 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEV 128
>TIGR_CMR|CJE_1664 [details] [associations]
symbol:CJE_1664 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_179645.1 ProteinModelPortal:Q5HSU0
STRING:Q5HSU0 GeneID:3232292 KEGG:cjr:CJE1664 PATRIC:20045123
OMA:KRNICEL ProtClustDB:CLSK879286
BioCyc:CJEJ195099:GJC0-1694-MONOMER Uniprot:Q5HSU0
Length = 226
Score = 144 (55.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 46/177 (25%), Positives = 87/177 (49%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L +LVV+D++ K E M+ S + G L + +K D+VI+D+ MP M
Sbjct: 8 LIILVVEDEV---KARESMINILSERFSKVIGAQNGDEGLKKFKKFKPDLVITDIAMPIM 64
Query: 77 DGFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
DG + + + D+P++++S E R+++ + G YL+KP+ ++EL + ++
Sbjct: 65 DGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGIDKYLIKPVDIEELFKVLDYLIG 124
Query: 136 KKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSVR---KRKDAENRHDD 189
+KI E + I + T+ S + +LT ++L + K+ A H+D
Sbjct: 125 EKI-EANMLVKISEEYQFNKTKRTLIYSGEEIVLTKKELAFISLLLKQPGALVLHED 180
>TAIR|locus:2026863 [details] [associations]
symbol:AT1G68670 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0009737 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY063886
EMBL:AY091241 IPI:IPI00541260 RefSeq:NP_564938.1 UniGene:At.27154
ProteinModelPortal:Q8VZS3 SMR:Q8VZS3 IntAct:Q8VZS3
EnsemblPlants:AT1G68670.1 GeneID:843197 KEGG:ath:AT1G68670
TAIR:At1g68670 HOGENOM:HOG000237574 InParanoid:Q8VZS3 OMA:EHESSPE
PhylomeDB:Q8VZS3 ProtClustDB:CLSN2687960 ArrayExpress:Q8VZS3
Genevestigator:Q8VZS3 Uniprot:Q8VZS3
Length = 354
Score = 150 (57.9 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 53/186 (28%), Positives = 89/186 (47%)
Query: 119 KPIRMKELRNIWQHVFRKKIHEVRDIEN-IEGFESIHMTRSGSDQSVDGPLLTGEDLTSV 177
K + +K +Q F+K++ E D++ ++ S+ T + S G G+ + +
Sbjct: 142 KVVEVKPKSGAFQP-FQKRVLET-DLQPAVKVASSMPATTTSSTTETCG----GK--SDL 193
Query: 178 RKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVG-PKKILDLMNV 236
K D E R + + + + +K R WS +LH++F+ A+ Q+G V PK+I D M V
Sbjct: 194 IKAGDEERRIEQQQ-SQSHTHRKQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKV 252
Query: 237 PWLTRENVASHLQKYRLYLTRLQKDELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHN 296
LT + V SHLQKYRL+ R + G +Q+ P + +S +
Sbjct: 253 DGLTNDEVKSHLQKYRLHTRRPAATSVAAQSTGNQQQ--PQFVVVGGIWVPSSQDFPPPS 310
Query: 297 DVSNGG 302
DV+N G
Sbjct: 311 DVANKG 316
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 37/128 (28%), Positives = 71/128 (55%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLL---RERKDG------YDIVI 68
+ VL VDD L ++E++L+ S +VT AL L E+ D++I
Sbjct: 34 VHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKASAEFDRLKVDLII 93
Query: 69 SDVNMPDMDGFKLLEHVGLEM---DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
+D MP M G++LL+ + ++PV++MS + +R+ + ++ GA D+LLKP+++ +
Sbjct: 94 TDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKPVKLAD 153
Query: 126 LRNIWQHV 133
++ + H+
Sbjct: 154 VKRLRSHL 161
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 129 (50.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 32/114 (28%), Positives = 63/114 (55%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
+++LVVDD +I++ L + YE V +A L D ++I+D NMP+M
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWNMPEM 59
Query: 77 DGFKLLEHVGLEM---DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
+G L++ V + ++P+IM++ +G + V+ ++ G +Y++KP + L+
Sbjct: 60 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 113
>TIGR_CMR|GSU_0789 [details] [associations]
symbol:GSU_0789 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_951846.1 ProteinModelPortal:Q74F20 GeneID:2685295
KEGG:gsu:GSU0789 PATRIC:22024339 OMA:HAVAARN
BioCyc:GSUL243231:GH27-807-MONOMER Uniprot:Q74F20
Length = 125
Score = 129 (50.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 34/106 (32%), Positives = 52/106 (49%)
Query: 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-YDIVISDVNMPD 75
G VL+ DD+ L+ L+KM++ V T G L+ + G +++ D+ +PD
Sbjct: 3 GGSVLICDDEEGMLRYLKKMIEAAGLRVETFGNGTSLLARIEGGDPGDASLLLQDMRLPD 62
Query: 76 MDGFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120
DG ++L V L LPV+MM+ V GA D+L KP
Sbjct: 63 ADGLEILHRVKELRPALPVVMMTAYACDEVVRAAFDGGASDFLPKP 108
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 129 (50.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 32/116 (27%), Positives = 59/116 (50%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L+V+D+ + LK+ +L Y V + AL + D++I D+ +P MDG
Sbjct: 5 RILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAATPP--DLIILDIMLPGMDG 62
Query: 79 FKLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQ 131
F++ + + + +PV+M++ T KG++ GA Y+ KP + + I Q
Sbjct: 63 FEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFKSARIIEIIQ 118
>TIGR_CMR|SPO_1624 [details] [associations]
symbol:SPO_1624 "DNA-binding response regulator"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_166865.1 ProteinModelPortal:Q5LSZ0 GeneID:3193367
KEGG:sil:SPO1624 PATRIC:23376571 OMA:FAVECAG Uniprot:Q5LSZ0
Length = 226
Score = 143 (55.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 35/109 (32%), Positives = 57/109 (52%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RVL+V+DD + L K + + V G R+ L G+D ++ D +P +DG
Sbjct: 4 RVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGL--YHATDGGFDAMVLDRMLPGLDG 61
Query: 79 FKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L++ V ++ PVIM++ +KG++ GA DYL+KP +EL
Sbjct: 62 LALIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQEL 110
>UNIPROTKB|P0AA16 [details] [associations]
symbol:ompR species:83333 "Escherichia coli K-12"
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA;IDA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0045893 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 EMBL:U18997 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:J01656
PIR:H65135 RefSeq:NP_417864.1 RefSeq:YP_492027.1 PDB:1ODD PDB:1OPC
PDB:2JPB PDBsum:1ODD PDBsum:1OPC PDBsum:2JPB
ProteinModelPortal:P0AA16 SMR:P0AA16 DIP:DIP-31859N IntAct:P0AA16
PaxDb:P0AA16 PRIDE:P0AA16 EnsemblBacteria:EBESCT00000000052
EnsemblBacteria:EBESCT00000000053 EnsemblBacteria:EBESCT00000000054
EnsemblBacteria:EBESCT00000000055 EnsemblBacteria:EBESCT00000017093
GeneID:12932273 GeneID:947913 KEGG:ecj:Y75_p3771 KEGG:eco:b3405
PATRIC:32122246 EchoBASE:EB0666 EcoGene:EG10672 KO:K07659
OMA:REPMSRD ProtClustDB:PRK09468 BioCyc:EcoCyc:OMPR-MONOMER
BioCyc:ECOL316407:JW3368-MONOMER EvolutionaryTrace:P0AA16
Genevestigator:P0AA16 Uniprot:P0AA16
Length = 239
Score = 144 (55.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 34/124 (27%), Positives = 69/124 (55%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVVDDD+ +LE+ L + ++V + A LL ++ + +++ D+ +P DG
Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLT--RESFHLMVLDLMLPGEDG 63
Query: 79 FKLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
+ + + + +P+IM++ GE + G++ GA DY+ KP +EL + V R++
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
Query: 138 IHEV 141
+E+
Sbjct: 124 ANEL 127
>UNIPROTKB|O07776 [details] [associations]
symbol:tcrA "Transcriptional regulatory protein TcrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000156 "phosphorelay
response regulator activity" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0035556 "intracellular signal
transduction" evidence=IDA] [GO:0070298 "negative regulation of
phosphorelay signal transduction system" evidence=IDA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005886
GO:GO:0005737 GO:GO:0006355 GenomeReviews:AL123456_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:BX842574
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034815 GO:GO:0070298 PIR:E70909 RefSeq:NP_215116.1
RefSeq:YP_006513938.1 HSSP:Q9WYN0 ProteinModelPortal:O07776
SMR:O07776 PRIDE:O07776 EnsemblBacteria:EBMYCT00000002096
GeneID:13318480 GeneID:887870 KEGG:mtu:Rv0602c KEGG:mtv:RVBD_0602c
PATRIC:18149834 TubercuList:Rv0602c KO:K02483
ProtClustDB:CLSK790622 Uniprot:O07776
Length = 253
Score = 145 (56.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 37/114 (32%), Positives = 64/114 (56%)
Query: 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG--YDIVISDVNM 73
+G+R+LVV+D+ +L + L + + V T R A++ + DG YD V+ DV +
Sbjct: 21 SGVRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAV----DGGDYDAVVLDVML 76
Query: 74 PDMDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
P +DGF++ + + + PV+M++ G + + G+ GA DYL KP + EL
Sbjct: 77 PGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDEL 130
>TIGR_CMR|BA_5275 [details] [associations]
symbol:BA_5275 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_847454.1
RefSeq:YP_021932.1 ProteinModelPortal:Q81XG2 DNASU:1084753
EnsemblBacteria:EBBACT00000010296 EnsemblBacteria:EBBACT00000014121
GeneID:1084753 GeneID:2818753 KEGG:ban:BA_5275 KEGG:bar:GBAA_5275
PATRIC:18788180 OMA:NANILQF ProtClustDB:CLSK917582
BioCyc:BANT261594:GJ7F-5148-MONOMER Uniprot:Q81XG2
Length = 221
Score = 142 (55.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 36/148 (24%), Positives = 74/148 (50%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+LV++D+ +++ + L ++ V G + + L + K+ YD+V+ DV +PD+DG+
Sbjct: 4 ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQ--KNSYDLVLLDVMLPDIDGY 61
Query: 80 KLLEHVGLEMDLPVIMMS-VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
+ + + + D+P+IM++ + E S + KG + G DY+ KP + V R+
Sbjct: 62 SICKIMRGQSDVPIIMLTGLHNEESEI-KGFELGIDDYITKPFHYTVFIKRVEAVLRRAA 120
Query: 139 HEVRDIENIEGFESIHMTRSGSDQSVDG 166
+ + I F + + + V G
Sbjct: 121 TKEAEAATILQFHELMLNSTAYAAYVHG 148
>UNIPROTKB|E1WEB4 [details] [associations]
symbol:cpxR "Two-component response regulatory protein"
species:216597 "Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 OMA:YQTPVIM EMBL:FQ312003 GenomeReviews:FQ312003_GR
RefSeq:YP_005183876.1 ProteinModelPortal:E1WEB4 IntAct:E1WEB4
PRIDE:E1WEB4 GeneID:11767742 KEGG:sey:SL1344_4008 PATRIC:43194339
Uniprot:E1WEB4
Length = 232
Score = 143 (55.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 47/165 (28%), Positives = 79/165 (47%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDDD +L+++L+ + V AL LL D D+++ DV MP +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELL---DDSIDLLLLDVMMPKKNG 59
Query: 79 FKLLEHVGLEMDLPVIMMSVDG-ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
L+ + PVIM++ G E RV+ G++ GA DYL KP +EL + + R+
Sbjct: 60 IDTLKALRQTHQTPVIMLTARGSELDRVL-GLELGADDYLPKPFNDRELVARIRAILRRS 118
Query: 138 IHEVRDIENIEG-----FESIHMTRSGSDQSVDGPLL--TGEDLT 175
+ + G +++ + + S DG L TG + T
Sbjct: 119 HWSEQQQSSDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFT 163
>TIGR_CMR|CBU_2006 [details] [associations]
symbol:CBU_2006 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 KO:K02483
RefSeq:NP_820981.1 ProteinModelPortal:Q83AA0 PRIDE:Q83AA0
GeneID:1209919 KEGG:cbu:CBU_2006 PATRIC:17932757 OMA:AKNGSEM
ProtClustDB:CLSK915183 BioCyc:CBUR227377:GJ7S-1980-MONOMER
Uniprot:Q83AA0
Length = 245
Score = 144 (55.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 36/109 (33%), Positives = 59/109 (54%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRER-KDGYDIVISDVNMPDMDG 78
+L+VDDD +L K L++ +E + LA+D + K D+VI D+ MP DG
Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEAS---LAKDGSEMQAILLKQAVDLVILDIMMPGDDG 63
Query: 79 FKLLEHVGLEMDLPVIMMS-VDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L + +P++M++ + E R++ G++ GA DYL KP +EL
Sbjct: 64 LTLCRQMRANSTIPILMLTAISEEVDRIL-GLEMGADDYLSKPFNPREL 111
>UNIPROTKB|P06628 [details] [associations]
symbol:spo0F "Sporulation initiation phosphotransferase F"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
Uniprot:P06628
Length = 124
Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 28/111 (25%), Positives = 60/111 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD +L ++ K Y+ AL ++ + + D+V+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 79 FKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
++L+ + ++ ++ VI+M+ GE + + + GA + KP + E+R+
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 33/113 (29%), Positives = 61/113 (53%)
Query: 19 RVLVVDDDLAWLKILEK-MLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+V+VVDD + +++ K +L++ + +AL E D+ + D+NMP MD
Sbjct: 4 KVMVVDD-ASTVRMYHKALLEEIGIFILEASNGVEALERALEMP--VDLFLVDINMPKMD 60
Query: 78 GFKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
GF L+ + +L P +M+S + + S +G+ GA Y++KP+ +EL+
Sbjct: 61 GFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 33/113 (29%), Positives = 61/113 (53%)
Query: 19 RVLVVDDDLAWLKILEK-MLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+V+VVDD + +++ K +L++ + +AL E D+ + D+NMP MD
Sbjct: 4 KVMVVDD-ASTVRMYHKALLEEIGIFILEASNGVEALERALEMP--VDLFLVDINMPKMD 60
Query: 78 GFKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
GF L+ + +L P +M+S + + S +G+ GA Y++KP+ +EL+
Sbjct: 61 GFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|SO_4388 [details] [associations]
symbol:SO_4388 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_719912.1 ProteinModelPortal:Q8E997 GeneID:1171990
KEGG:son:SO_4388 PATRIC:23528433 ProtClustDB:CLSK889389
Uniprot:Q8E997
Length = 227
Score = 142 (55.0 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 32/111 (28%), Positives = 63/111 (56%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+++L+ +DD+ + L ML + Y V + ++LL+ +++ D +I D+ MP++D
Sbjct: 1 MKILIAEDDIHIRQGLADMLSREGYSVLLADNGK--VALLKYQQEQPDFIILDIMMPELD 58
Query: 78 GFKLLEHVGL-EMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
G+ + + + + PVI +S GE + G++ GA DY+ KP + E+R
Sbjct: 59 GYSVCKEIRKHDEQTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVR 109
>TIGR_CMR|CPS_2013 [details] [associations]
symbol:CPS_2013 "C4-dicarboxylate transport
transcriptional regulatory protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
RefSeq:YP_268743.1 ProteinModelPortal:Q483M3 STRING:Q483M3
GeneID:3520238 KEGG:cps:CPS_2013 PATRIC:21467153 KO:K10126
OMA:RKHGLNF ProtClustDB:CLSK907021
BioCyc:CPSY167879:GI48-2083-MONOMER Uniprot:Q483M3
Length = 453
Score = 150 (57.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 35/108 (32%), Positives = 62/108 (57%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V V+DD+ +E+ + ++EV T A L+ L + G +VISD+NMP MDG
Sbjct: 9 VFVIDDEEHIRSAIEQTFELRNFEVQTFSQAHQLLNQLSDTWPG--VVISDINMPKMDGH 66
Query: 80 KLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
+L+ V ++ +L I+++ G+ S +K +++GA D++ KP +L
Sbjct: 67 QLMAEVKNIDSELSTILLTGFGDISMAVKAMRNGAYDFIEKPFNNDDL 114
>TIGR_CMR|ECH_0773 [details] [associations]
symbol:ECH_0773 "putative response regulator/diguanylate
cyclase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0004871 "signal transducer activity"
evidence=ISS] [GO:0007165 "signal transduction" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0005622 SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_507571.1 ProteinModelPortal:Q2GG62
STRING:Q2GG62 GeneID:3927207 KEGG:ech:ECH_0773 PATRIC:20576976
OMA:PDICARY BioCyc:ECHA205920:GJNR-776-MONOMER Uniprot:Q2GG62
Length = 458
Score = 150 (57.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 40/132 (30%), Positives = 73/132 (55%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VL+VDD A +K+L+ L Y V T DA+ + E+ DI++ DV MP+MDG
Sbjct: 4 KVLIVDDLPANIKLLQAKLMSEYYNVLTATNGMDAIKIAEEKHP--DIILLDVMMPEMDG 61
Query: 79 FKLLEHVGLEMD---LPVIMMS-VDGETSRVMKGVQHGACDYLLKPIR----MKELRNIW 130
++ + + + +P++M++ +D + + G+ +GA D+L KPI +R++
Sbjct: 62 YETCKRLKSNPETTYIPIVMVTALDNTSDNRVSGLSYGADDFLTKPINDTALFARIRSLT 121
Query: 131 QHVFRKKIHEVR 142
+ F+ I E+R
Sbjct: 122 R--FKMVIDELR 131
>UNIPROTKB|Q50806 [details] [associations]
symbol:trcR "Response regulator homolog TrcR" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0045892 GO:GO:0045893
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
EMBL:AL123456 EMBL:U88959 PIR:D70624 RefSeq:NP_215549.1
RefSeq:YP_006514396.1 SMR:Q50806 EnsemblBacteria:EBMYCT00000001946
GeneID:13319598 GeneID:887957 KEGG:mtu:Rv1033c KEGG:mtv:RVBD_1033c
PATRIC:18150824 TubercuList:Rv1033c KO:K07672 OMA:IAHNGRE
ProtClustDB:CLSK790905 Uniprot:Q50806
Length = 257
Score = 144 (55.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 46/164 (28%), Positives = 84/164 (51%)
Query: 8 PRNDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIV 67
PR + + +RVL+VDD+ A +++ L ++V ++A++ + K G D++
Sbjct: 22 PRIHRADGSPIRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIA--KFDKVGPDVL 79
Query: 68 ISDVNMPDMDGFKLLEHVGLEMDL--PVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMK 124
+ D+ +PD+DG ++L V E D+ P + ++ D RV G+ GA DY+ KP ++
Sbjct: 80 VLDIMLPDVDGLEILRRVR-ESDVYTPTLFLTARDSVMDRVT-GLTSGADDYMTKPFSLE 137
Query: 125 ELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSV--DG 166
EL + + R+ H R + E +T G+ + V DG
Sbjct: 138 ELVARLRGLLRRSSHLERPAD--EALRVGDLTLDGASREVTRDG 179
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 142 (55.0 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+LVVDD+ ++ LK Y+V G + L LL E + +V+ D+ MP +DG
Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENE--VHLVVLDIMMPKVDGI 63
Query: 80 KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
+ + E ++P+IM+S + + G+ GA DY+ KP EL
Sbjct: 64 HMCMKIREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLEL 110
>UNIPROTKB|Q52884 [details] [associations]
symbol:cheY2 "CheY2" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61838 PDB:1P6Q PDB:1P6U PDBsum:1P6Q
PDBsum:1P6U ProteinModelPortal:Q52884 SMR:Q52884 IntAct:Q52884
PATRIC:23630501 ProtClustDB:CLSK800134 EvolutionaryTrace:Q52884
Uniprot:Q52884
Length = 129
Score = 127 (49.8 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 33/121 (27%), Positives = 62/121 (51%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
++VL+VDD + +L L++ + ++T G + ++ + + +VISD NMP M
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKM 64
Query: 77 DGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG LL+ V I+++ G+ + V K GA + L KP +++++ + V
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAV 124
Query: 134 F 134
F
Sbjct: 125 F 125
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 142 (55.0 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 35/137 (25%), Positives = 74/137 (54%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCS-YE-VTTCGLARDALSLLRERKDGYDIVISDVNMPD 75
++VL+V+DD + L++ +E V + A+ +L E + D+V+ D+ MP+
Sbjct: 2 IKVLIVEDDPMVAMLNTHYLEQVGGFELVQAVNSIKSAIEVLEESR--IDLVLLDIFMPE 59
Query: 76 MDGFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
GF+LL ++ E ++ ++M+S + + K +Q+G DYL+KP + + ++
Sbjct: 60 ETGFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALT-IY 118
Query: 135 RKKIHEVRDIENIEGFE 151
R+K+ +++ + I E
Sbjct: 119 REKLTFMKEQQKISQSE 135
>UNIPROTKB|Q4K4R2 [details] [associations]
symbol:creB "DNA-binding response regulator CreB"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000076
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07663 ProtClustDB:PRK11083
RefSeq:YP_262771.2 ProteinModelPortal:Q4K4R2 GeneID:3480085
KEGG:pfl:PFL_5713 PATRIC:19880927
BioCyc:PFLU220664:GIX8-5753-MONOMER Uniprot:Q4K4R2
Length = 226
Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 35/123 (28%), Positives = 67/123 (54%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+V+D+ A L L+ + T L R AL ++ D++I D+ +PD+ GF
Sbjct: 4 ILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALE--HQQASPADLIILDIGLPDISGF 61
Query: 80 KLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
+ + + ++PV+ +S DGE RV+ G++ GA DY++KP +E+ + + ++ +
Sbjct: 62 ETCKQLRRFSEVPVMFLSARDGEIDRVV-GLEIGADDYVVKPFSPREVAARVKAILKRMV 120
Query: 139 HEV 141
V
Sbjct: 121 PRV 123
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 149 (57.5 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 34/112 (30%), Positives = 61/112 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L++DD+ + L +LK + V + G +A L +D +DIVI+D+ +PD G
Sbjct: 6 KILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTLT--RDTFDIVITDLFLPDASG 63
Query: 79 FKLLEHVGLEMDLP-VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
+L+ V + L VI+++ +K ++ GA DY+ KP+ EL+ I
Sbjct: 64 IDILKKVKEDAPLTEVILITGHASAETAVKAMKEGAFDYITKPLNFDELKII 115
>UNIPROTKB|Q9A5I5 [details] [associations]
symbol:pleD "Response regulator PleD" species:190650
"Caulobacter crescentus CB15" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0005525
GO:GO:0005737 GO:GO:0030154 GO:GO:0006355 GO:GO:0046872
GO:GO:0007049 SUPFAM:SSF55073 UniPathway:UPA00599 GO:GO:0052621
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 EMBL:AE005673
GenomeReviews:AE005673_GR KO:K02488 EMBL:L42554 PIR:E87554
RefSeq:NP_421265.1 ProteinModelPortal:Q9A5I5 SMR:Q9A5I5
DIP:DIP-29503N IntAct:Q9A5I5 GeneID:943650 KEGG:ccr:CC_2462
PATRIC:21301956 HOGENOM:HOG000167204 OMA:LAICERN
ProtClustDB:PRK09581 Uniprot:Q9A5I5
Length = 454
Score = 149 (57.5 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 41/107 (38%), Positives = 64/107 (59%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LVVDD A +++LE L YEV+T AL++ +D DI++ DV MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA--RDLPDIILLDVMMPGMDG 61
Query: 79 FKL---LEHVGLEMDLPVIMMS-VDGETSRVMKGVQHGACDYLLKPI 121
F + L+ +PV++++ +DG R+ +G++ GA D+L KPI
Sbjct: 62 FTVCRKLKDDPTTRHIPVVLITALDGRGDRI-QGLESGASDFLTKPI 107
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 153 (58.9 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 30/113 (26%), Positives = 64/113 (56%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+++VDDD + L+ LKK + T + L +L+ + D+++ D+ MP+MDG+
Sbjct: 778 IMIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTN-IDLILMDIMMPNMDGY 836
Query: 80 KLLEHVGLEM---DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
+ +EH+ + + ++P+I ++ + K + GA DY+ KP+ + +L ++
Sbjct: 837 ETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSV 889
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 149 (57.5 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 37/118 (31%), Positives = 60/118 (50%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L+VDD+ ++L +E R AL L + D+V+ D+ MP+MDG
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHP--DVVLMDIRMPEMDG 63
Query: 79 FKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
K L+ + E PVI+M+ E ++ ++ GA DY++KP + EL I Q +
Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121
>UNIPROTKB|Q9KRK2 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 140 (54.3 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 36/112 (32%), Positives = 67/112 (59%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDAL-SLLRERKDGYDIVISDVNMPDM 76
+++LVV+DD+ ++ +++L LA+D + +L R + +D+++ D+ +P +
Sbjct: 1 MKILVVEDDV---QLGQQILSALEQTGWVPELAQDGIDALYRATAEEWDVIVLDLGLPKL 57
Query: 77 DGFKLLEHVGLE-MDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKEL 126
DG +L+ + E ++ PV+++S D T RV +G+ GA DYL KP M EL
Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRV-EGLNAGADDYLTKPFEMVEL 108
>TIGR_CMR|VC_1638 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 140 (54.3 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 36/112 (32%), Positives = 67/112 (59%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDAL-SLLRERKDGYDIVISDVNMPDM 76
+++LVV+DD+ ++ +++L LA+D + +L R + +D+++ D+ +P +
Sbjct: 1 MKILVVEDDV---QLGQQILSALEQTGWVPELAQDGIDALYRATAEEWDVIVLDLGLPKL 57
Query: 77 DGFKLLEHVGLE-MDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKEL 126
DG +L+ + E ++ PV+++S D T RV +G+ GA DYL KP M EL
Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRV-EGLNAGADDYLTKPFEMVEL 108
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 141 (54.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 48/178 (26%), Positives = 89/178 (50%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG---------YDIVI 68
+ VL VDD L ++E++L+ S +VT AL L D D++I
Sbjct: 33 VHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLKVDLII 92
Query: 69 SDVNMPDMDGFKLLEHVGLEM---DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
+D MP M G++LL+ + ++PV++MS + +R+ + ++ GA D+LLKP+++ +
Sbjct: 93 TDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLAD 152
Query: 126 LRNIWQHVFRK-KIH---EVRDIENIEGFESIHMTRS--GSDQSVDGPLLTGEDLTSV 177
++ + ++ R K+ R + + T S SD +V+ PL +D S+
Sbjct: 153 VKRLRSYLTRDVKVAAEGNKRKLTTPPPPPPLSATSSMESSDSTVESPLSMVDDEDSL 210
>TIGR_CMR|BA_0287 [details] [associations]
symbol:BA_0287 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842837.1 RefSeq:YP_016897.1 RefSeq:YP_026554.1
ProteinModelPortal:Q81VC5 DNASU:1085878
EnsemblBacteria:EBBACT00000011028 EnsemblBacteria:EBBACT00000016417
EnsemblBacteria:EBBACT00000022481 GeneID:1085878 GeneID:2819460
GeneID:2851280 KEGG:ban:BA_0287 KEGG:bar:GBAA_0287 KEGG:bat:BAS0273
OMA:NYNLVIL ProtClustDB:CLSK917934
BioCyc:BANT260799:GJAJ-313-MONOMER
BioCyc:BANT261594:GJ7F-322-MONOMER Uniprot:Q81VC5
Length = 237
Score = 140 (54.3 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 34/110 (30%), Positives = 62/110 (56%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+R+L+ DDD +L+ L++ Y V T AL L + + Y IVI D+ MP +D
Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQ--NNYSIVILDLMMPKVD 61
Query: 78 GFKLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKEL 126
G ++ + + ++P++M++ D E +++ G+ GA DY+ KP + E+
Sbjct: 62 GIEVCRKLRDKTNVPILMLTAKDHEVDKIL-GLSIGADDYITKPFSIHEV 110
Score = 39 (18.8 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 199 KKARVVWSID-LHQKFVKAVNQIGFDKVGPK 228
+K R ID + KF++ V IG+ VG K
Sbjct: 204 RKLRKKIEIDPSNPKFIQTVWGIGYKFVGEK 234
>UNIPROTKB|P0AEV1 [details] [associations]
symbol:rssB "regulator of RpoS" species:83333 "Escherichia
coli K-12" [GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0006508
"proteolysis" evidence=EXP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006508 GO:GO:0006351
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 EMBL:X66003 EMBL:M64675 PIR:A36871
RefSeq:NP_415751.1 RefSeq:YP_489503.1 PDB:3EOD PDBsum:3EOD
ProteinModelPortal:P0AEV1 SMR:P0AEV1 IntAct:P0AEV1 PRIDE:P0AEV1
EnsemblBacteria:EBESCT00000002730 EnsemblBacteria:EBESCT00000002731
EnsemblBacteria:EBESCT00000016710 GeneID:12932932 GeneID:945855
KEGG:ecj:Y75_p1208 KEGG:eco:b1235 PATRIC:32117726 EchoBASE:EB2042
EcoGene:EG12121 HOGENOM:HOG000119811 KO:K02485 OMA:MICDLAM
ProtClustDB:PRK10693 BioCyc:EcoCyc:EG12121-MONOMER
BioCyc:ECOL316407:JW1223-MONOMER EvolutionaryTrace:P0AEV1
Genevestigator:P0AEV1 Uniprot:P0AEV1
Length = 337
Score = 146 (56.5 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 41/121 (33%), Positives = 67/121 (55%)
Query: 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY--DIVISDVNMP 74
G ++L+V+D+ + +L+ S TT LA D + L E G+ D++I D+ MP
Sbjct: 7 GKQILIVEDEQVFRSLLDSWFS--SLGATTV-LAADGVDAL-ELLGGFTPDLMICDIAMP 62
Query: 75 DMDGFKLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
M+G KLLEH+ D PV+++S + + K ++ G D LLKP+ K+L + + V
Sbjct: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV--KDLNRLREMV 120
Query: 134 F 134
F
Sbjct: 121 F 121
>TIGR_CMR|CJE_1362 [details] [associations]
symbol:CJE_1362 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 PIR:E81329
RefSeq:YP_179349.1 ProteinModelPortal:Q5HTN6 STRING:Q5HTN6
GeneID:3231868 KEGG:cjr:CJE1362 PATRIC:20044524 OMA:SARHDIS
ProtClustDB:CLSK879152 BioCyc:CJEJ195099:GJC0-1389-MONOMER
Uniprot:Q5HTN6
Length = 224
Score = 140 (54.3 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 35/117 (29%), Positives = 64/117 (54%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+++DDL +I + L+K +V LS L ++ Y ++I D+++P +DG
Sbjct: 4 ILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALKE--YQLIILDLSLPGLDGL 61
Query: 80 KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR-NIWQHVFR 135
++ E + + D P+I+ S + + + ++ GA DYL KP KEL+ I H+ R
Sbjct: 62 EVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKPYNPKELQARIKSHLRR 118
>TIGR_CMR|GSU_0470 [details] [associations]
symbol:GSU_0470 "sigma-54 dependent response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951529.1 ProteinModelPortal:Q74FY2 GeneID:2686241
KEGG:gsu:GSU0470 PATRIC:22023688 OMA:QYRLREY ProtClustDB:CLSK827855
BioCyc:GSUL243231:GH27-461-MONOMER Uniprot:Q74FY2
Length = 453
Score = 148 (57.2 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 37/125 (29%), Positives = 66/125 (52%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L+ +DD + L +LK Y++ +AL+LLR ++ +D+V+SD+ MP + G
Sbjct: 4 RILIAEDDSTFRGFLRTVLKGEGYDIREAADGEEALALLR--RESFDLVLSDLRMPGIGG 61
Query: 79 FKLLEHVGLEMDLP--VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE-LRNIWQHVFR 135
+LL + D P ++++ G + V+ GA D+L KP++ + LR + V
Sbjct: 62 LELLR-ASRDDDYPPAFVILTAFGTIEEAVAAVKEGAADFLTKPLKDPDTLRVLVGRVLS 120
Query: 136 KKIHE 140
K E
Sbjct: 121 GKSRE 125
>TIGR_CMR|BA_1497 [details] [associations]
symbol:BA_1497 "DNA-binding response regulator ResD"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009060 "aerobic respiration"
evidence=ISS] [GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_843949.1
RefSeq:YP_018120.1 RefSeq:YP_027655.1 ProteinModelPortal:Q81SZ6
DNASU:1087158 EnsemblBacteria:EBBACT00000009602
EnsemblBacteria:EBBACT00000013896 EnsemblBacteria:EBBACT00000020931
GeneID:1087158 GeneID:2818509 GeneID:2850870 KEGG:ban:BA_1497
KEGG:bar:GBAA_1497 KEGG:bat:BAS1386 KO:K07775 OMA:VWHYEFF
ProtClustDB:CLSK873069 BioCyc:BANT260799:GJAJ-1460-MONOMER
BioCyc:BANT261594:GJ7F-1522-MONOMER Uniprot:Q81SZ6
Length = 238
Score = 141 (54.7 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 32/120 (26%), Positives = 65/120 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L+VDD+ ++L+ L++ Y + AL + + + YD+++ D+ MP DG
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQ--NDYDLILLDLMMPGKDG 63
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
++ + V + P+IM++ GE ++G + G DY++KP +E+ + V R+ +
Sbjct: 64 IEVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSV 123
>UNIPROTKB|Q9KNI9 [details] [associations]
symbol:VC_2749 "Nitrogen regulation protein NR(I)"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006808 "regulation of nitrogen utilization"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0009399 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
OMA:ARGQSNL GO:GO:0050906 TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038
RefSeq:NP_232375.1 ProteinModelPortal:Q9KNI9 SMR:Q9KNI9
DNASU:2614912 GeneID:2614912 KEGG:vch:VC2749 PATRIC:20084518
ProtClustDB:CLSK874911 Uniprot:Q9KNI9
Length = 468
Score = 148 (57.2 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 39/107 (36%), Positives = 55/107 (51%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V VVDDD + ++EK L + T A L L ER+ D+++SD+ MP MDG
Sbjct: 8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLAL-ERETP-DVLVSDIRMPGMDGI 65
Query: 80 KLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
LL V +LPVI+M+ + + Q GA +YL KP + E
Sbjct: 66 ALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDE 112
>TIGR_CMR|VC_2749 [details] [associations]
symbol:VC_2749 "nitrogen regulation protein NR(I)"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0009399 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 KO:K07712 OMA:ARGQSNL GO:GO:0050906
TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038 RefSeq:NP_232375.1
ProteinModelPortal:Q9KNI9 SMR:Q9KNI9 DNASU:2614912 GeneID:2614912
KEGG:vch:VC2749 PATRIC:20084518 ProtClustDB:CLSK874911
Uniprot:Q9KNI9
Length = 468
Score = 148 (57.2 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 39/107 (36%), Positives = 55/107 (51%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V VVDDD + ++EK L + T A L L ER+ D+++SD+ MP MDG
Sbjct: 8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLAL-ERETP-DVLVSDIRMPGMDGI 65
Query: 80 KLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
LL V +LPVI+M+ + + Q GA +YL KP + E
Sbjct: 66 ALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDE 112
>TIGR_CMR|GSU_1286 [details] [associations]
symbol:GSU_1286 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_952339.1
ProteinModelPortal:Q74DN0 GeneID:2686542 KEGG:gsu:GSU1286
PATRIC:22025343 OMA:CMDIMMP ProtClustDB:CLSK2522233
BioCyc:GSUL243231:GH27-1254-MONOMER Uniprot:Q74DN0
Length = 131
Score = 125 (49.1 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 40/127 (31%), Positives = 65/127 (51%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSY-EVTTCGL-ARDALSLLRERKDGYDIVISDVNMPD 75
++ L+V+DD KI++++L ++ T G A A L + YD+V D+ MP+
Sbjct: 1 MKTLIVEDDFISRKIMKELLTSLGECDIATDGEEAVQAFRLALDEHRPYDLVCMDIMMPN 60
Query: 76 MDGFKLLEHV-------GLE--MDLPVIMMSVDGETSRVMKGVQHG-ACDYLLKPIR--- 122
MDG + LE + GL ++ VIM + + V++ G A YL+KPI
Sbjct: 61 MDGHEALEQIREIERGMGLNGAQEVKVIMTTALDDPKNVVEAFYRGGATSYLVKPITKQR 120
Query: 123 -MKELRN 128
MKE+R+
Sbjct: 121 LMKEIRS 127
>TIGR_CMR|BA_3067 [details] [associations]
symbol:BA_3067 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P06628
RefSeq:NP_845397.1 RefSeq:YP_019708.1 RefSeq:YP_029111.1
ProteinModelPortal:Q81NV5 DNASU:1088217
EnsemblBacteria:EBBACT00000009080 EnsemblBacteria:EBBACT00000017281
EnsemblBacteria:EBBACT00000021032 GeneID:1088217 GeneID:2817324
GeneID:2850761 KEGG:ban:BA_3067 KEGG:bar:GBAA_3067 KEGG:bat:BAS2853
OMA:LTKEHFF ProtClustDB:CLSK886597
BioCyc:BANT260799:GJAJ-2916-MONOMER
BioCyc:BANT261594:GJ7F-3019-MONOMER Uniprot:Q81NV5
Length = 223
Score = 139 (54.0 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 32/108 (29%), Positives = 62/108 (57%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+V+DDL +L+K+L++ Y V R L ++ E D+V+ DV +P DG+
Sbjct: 6 ILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIHE----IDLVVMDVMLPGEDGY 61
Query: 80 KLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
++ + + L +++P+I +S + +KG+ G +Y++KP +EL
Sbjct: 62 QITKKIKNLGLNIPIIFLSARNDMDSKLKGLTIGE-EYMIKPFDPREL 108
>TAIR|locus:2089260 [details] [associations]
symbol:AT3G13040 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0015996 "chlorophyll catabolic process"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY050889 EMBL:AY096674
IPI:IPI00543771 RefSeq:NP_566442.1 RefSeq:NP_974298.1
UniGene:At.11993 ProteinModelPortal:Q949U2 SMR:Q949U2 STRING:Q949U2
PRIDE:Q949U2 EnsemblPlants:AT3G13040.1 EnsemblPlants:AT3G13040.2
GeneID:820490 KEGG:ath:AT3G13040 OMA:RIEEHAK
ProtClustDB:CLSN2688327 ArrayExpress:Q949U2 Genevestigator:Q949U2
Uniprot:Q949U2
Length = 449
Score = 147 (56.8 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 36/88 (40%), Positives = 55/88 (62%)
Query: 195 ASSTKKARVVWSIDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253
+++ +K+R+ W+ +LH+ FVKAV ++ G +K PK + LMNV LT +V SHLQKYRL
Sbjct: 236 SAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRL 295
Query: 254 YLTRLQKDELKTSVGGIKQKDSPSKDSA 281
+K E K + ++K + SK A
Sbjct: 296 AKYMPEKKEEKRTDNSEEKKLALSKSEA 323
>TIGR_CMR|BA_0651 [details] [associations]
symbol:BA_0651 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843182.1
RefSeq:YP_017279.1 RefSeq:YP_026895.1 ProteinModelPortal:Q81V49
DNASU:1088070 EnsemblBacteria:EBBACT00000008363
EnsemblBacteria:EBBACT00000015665 EnsemblBacteria:EBBACT00000022532
GeneID:1088070 GeneID:2814886 GeneID:2850289 KEGG:ban:BA_0651
KEGG:bar:GBAA_0651 KEGG:bat:BAS0618 OMA:LWDEAKH
ProtClustDB:CLSK915873 BioCyc:BANT260799:GJAJ-677-MONOMER
BioCyc:BANT261594:GJ7F-704-MONOMER Uniprot:Q81V49
Length = 225
Score = 139 (54.0 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 30/107 (28%), Positives = 59/107 (55%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+VDD+ L++L L Y +A+S + + + ++ D+ MP MDG+
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQN--FKFILLDIMMPKMDGW 61
Query: 80 KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
+ + + ++P+IM++ +T V++G++ GA DY+ KP +EL
Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEEL 108
>TIGR_CMR|DET_0177 [details] [associations]
symbol:DET_0177 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
Uniprot:Q3ZA24
Length = 226
Score = 139 (54.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 31/111 (27%), Positives = 62/111 (55%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSY---EVTTCGLARDALSLLRERKDGYDIVISDVNMP 74
+ +L+V+D+ A + +L+ SY ++T C +A+ + D D+V+ D+ +P
Sbjct: 1 MNILIVEDNDAAASTISSILR-LSYHDAKITVCRTGYEAVESVNS--DKADLVLLDLGLP 57
Query: 75 DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
DM+G K+L+ + P+I+++ + V+K ++ GA +Y+ KP R E
Sbjct: 58 DMNGLKVLDEIHPITGAPIIVVTACEDEENVLKALEQGADEYITKPFRHLE 108
>UNIPROTKB|P14376 [details] [associations]
symbol:rcsC "RcsC sensory histidine kinase" species:83333
"Escherichia coli K-12" [GO:0018106 "peptidyl-histidine
phosphorylation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0046777
"protein autophosphorylation" evidence=IMP] [GO:0044010
"single-species biofilm formation" evidence=IMP] [GO:0071470
"cellular response to osmotic stress" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA;RCA]
[GO:0016020 "membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA;IDA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 InterPro:IPR019017 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 Pfam:PF09456 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50112 PROSITE:PS51426 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0005622
GO:GO:0071470 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
BRENDA:2.7.13.3 GO:GO:0018106 GO:GO:0044010 EMBL:M28242 EMBL:L11272
PIR:H64991 RefSeq:NP_416722.2 PDB:2AYX PDB:2AYY PDB:2AYZ
PDBsum:2AYX PDBsum:2AYY PDBsum:2AYZ ProteinModelPortal:P14376
SMR:P14376 DIP:DIP-10647N IntAct:P14376 MINT:MINT-1267658
PRIDE:P14376 EnsemblBacteria:EBESCT00000001645
EnsemblBacteria:EBESCT00000017555 GeneID:948993 KEGG:eco:b2218
PATRIC:32119795 EchoBASE:EB0815 EcoGene:EG10822
HOGENOM:HOG000122300 KO:K07677 OMA:HPINRSL ProtClustDB:PRK10841
BioCyc:EcoCyc:RCSC-MONOMER BioCyc:ECOL316407:JW5917-MONOMER
BioCyc:ECOL316407:JW5920-MONOMER EvolutionaryTrace:P14376
Genevestigator:P14376 Uniprot:P14376
Length = 949
Score = 151 (58.2 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 38/127 (29%), Positives = 69/127 (54%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ +LVVDD ++L L Y+ T DAL++L K+ DIV+SDVNMP+MD
Sbjct: 825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLSDVNMPNMD 882
Query: 78 GFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
G++L + + L + LPVI ++ + + ++ G L KP+ + ++ ++ +
Sbjct: 883 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLT-LYAE 941
Query: 137 KIHEVRD 143
++ + RD
Sbjct: 942 RVRKSRD 948
>UNIPROTKB|Q9KNN9 [details] [associations]
symbol:VC_2692 "Transcriptional regulator CpxR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
Uniprot:Q9KNN9
Length = 228
Score = 139 (54.0 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 35/108 (32%), Positives = 62/108 (57%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L++DDD +L ++L+ +E++ A D + L D D+++ DV MP ++G
Sbjct: 4 ILLIDDDTELTSLLTEVLQYEGFEISQ---ANDGEAGLAAVSDEIDLILLDVMMPKLNGM 60
Query: 80 KLLEHVGLEMDLPVIMMSVDGET-SRVMKGVQHGACDYLLKPIRMKEL 126
+ L+ + + PV+M++ GE RV+ G++ GA DYL KP +EL
Sbjct: 61 ETLKRLREKWATPVLMLTAKGEEIDRVI-GLELGADDYLPKPFSDREL 107
>TIGR_CMR|VC_2692 [details] [associations]
symbol:VC_2692 "transcriptional regulator CpxR" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
Uniprot:Q9KNN9
Length = 228
Score = 139 (54.0 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 35/108 (32%), Positives = 62/108 (57%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L++DDD +L ++L+ +E++ A D + L D D+++ DV MP ++G
Sbjct: 4 ILLIDDDTELTSLLTEVLQYEGFEISQ---ANDGEAGLAAVSDEIDLILLDVMMPKLNGM 60
Query: 80 KLLEHVGLEMDLPVIMMSVDGET-SRVMKGVQHGACDYLLKPIRMKEL 126
+ L+ + + PV+M++ GE RV+ G++ GA DYL KP +EL
Sbjct: 61 ETLKRLREKWATPVLMLTAKGEEIDRVI-GLELGADDYLPKPFSDREL 107
>TIGR_CMR|BA_4920 [details] [associations]
symbol:BA_4920 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_847118.1 RefSeq:YP_021563.2
ProteinModelPortal:Q81KS0 DNASU:1084104
EnsemblBacteria:EBBACT00000011298 EnsemblBacteria:EBBACT00000014550
GeneID:1084104 GeneID:2819868 KEGG:ban:BA_4920 KEGG:bar:GBAA_4920
PATRIC:18787418 OMA:FFVTHPN ProtClustDB:CLSK882384
BioCyc:BANT261594:GJ7F-4779-MONOMER Uniprot:Q81KS0
Length = 229
Score = 139 (54.0 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 37/166 (22%), Positives = 84/166 (50%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L+++D+++ ++ L+ ++V L + + + YD++I D+ +P M+G
Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQ--EDYDLIILDIMLPKMNG 60
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL-RNIWQHVFRKK 137
F++ + + D+P++++S E ++G+ GA DY+ KP EL + H+ R
Sbjct: 61 FEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR-- 118
Query: 138 IHEVRDIENI-EGFESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKD 182
+E R + N+ + +++++ DQ + E++ K D
Sbjct: 119 -YE-RLLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFD 162
>TIGR_CMR|CHY_2047 [details] [associations]
symbol:CHY_2047 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_360866.1
ProteinModelPortal:Q3AAG8 SMR:Q3AAG8 STRING:Q3AAG8 GeneID:3727851
KEGG:chy:CHY_2047 PATRIC:21277175 KO:K07658 OMA:WGYEFSG
ProtClustDB:CLSK2772343 BioCyc:CHYD246194:GJCN-2046-MONOMER
Uniprot:Q3AAG8
Length = 231
Score = 139 (54.0 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 33/112 (29%), Positives = 67/112 (59%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+++LVVDD+ +++++ L++ Y+V AL +++ K+ D+VI D+ +P M
Sbjct: 1 MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVK--KELPDLVILDIMLPGMS 58
Query: 78 GFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G ++ +++ ++P+IM+S GE + G++ GA DY++KP +EL
Sbjct: 59 GLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPREL 110
>TIGR_CMR|CHY_0092 [details] [associations]
symbol:CHY_0092 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
Length = 234
Score = 139 (54.0 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 34/118 (28%), Positives = 61/118 (51%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VL+++DD + ++ L+ + V L E + YD+++ D+ +P +DG
Sbjct: 3 KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEE--YDLILLDLMLPGIDG 60
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL-RNIWQHVFR 135
F++L V E D PV+++S E ++G+ GA DY+ KP EL + H+ R
Sbjct: 61 FEVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGR 118
>TIGR_CMR|NSE_0512 [details] [associations]
symbol:NSE_0512 "response regulator/GGDEF domain protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3706 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_506396.1 ProteinModelPortal:Q2GDQ0
STRING:Q2GDQ0 GeneID:3931788 KEGG:nse:NSE_0512 PATRIC:22681073
OMA:TELGIND BioCyc:NSEN222891:GHFU-532-MONOMER Uniprot:Q2GDQ0
Length = 456
Score = 146 (56.5 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 35/106 (33%), Positives = 61/106 (57%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+LVVDD + +KILE L Y+V T A+ L ++ + D+++ DV MP+MDGF
Sbjct: 5 ILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELAKQHQP--DVILLDVMMPEMDGF 62
Query: 80 KLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR 122
+ + + M +PVI+++ + ++G+ GA D+L+KP +
Sbjct: 63 ETCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAK 108
>TIGR_CMR|GSU_1658 [details] [associations]
symbol:GSU_1658 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K02488 HSSP:P06143 RefSeq:NP_952709.1
ProteinModelPortal:Q74CL4 GeneID:2685291 KEGG:gsu:GSU1658
PATRIC:22026165 HOGENOM:HOG000131459 OMA:NINFLEE
ProtClustDB:CLSK924527 BioCyc:GSUL243231:GH27-1650-MONOMER
Uniprot:Q74CL4
Length = 458
Score = 146 (56.5 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 38/132 (28%), Positives = 73/132 (55%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LVV+DD + ++ +LK+ YEV T + L L +++ Y +VI+D+ MP M G
Sbjct: 3 RILVVEDDRFFRQMYVDLLKEEGYEVDTVASGTEGLKRLEKQE--YHLVITDLVMPGMSG 60
Query: 79 FKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF--R 135
++L V + ++ VI+++ + +++GA DY+LKP E ++ F R
Sbjct: 61 IEVLSRVKQKAPNVDVILVTGHANLESAVYALKNGARDYILKPFNHDEFKHTVALCFEQR 120
Query: 136 KKIHEVRDIENI 147
+ I+E +++ +
Sbjct: 121 RLINENYELKEL 132
>TIGR_CMR|GSU_0451 [details] [associations]
symbol:GSU_0451 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_951510.1 ProteinModelPortal:Q74G01 GeneID:2686349
KEGG:gsu:GSU0451 PATRIC:22023646 OMA:MRRSELD ProtClustDB:CLSK827838
BioCyc:GSUL243231:GH27-442-MONOMER Uniprot:Q74G01
Length = 224
Score = 138 (53.6 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 30/110 (27%), Positives = 58/110 (52%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
++VLVV+D+ +++ L++ YEV + L + ++ GYD+++ DV +P D
Sbjct: 1 MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDK--GYDLIVLDVMLPKKD 58
Query: 78 GFKLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G ++ + + PV+M++ ++ G+ G+ DYL KP EL
Sbjct: 59 GLSVVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAEL 108
>TIGR_CMR|GSU_0598 [details] [associations]
symbol:GSU_0598 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951656.1 ProteinModelPortal:Q74FK9 GeneID:2688651
KEGG:gsu:GSU0598 PATRIC:22023947 OMA:SGMEVLK ProtClustDB:CLSK827940
BioCyc:GSUL243231:GH27-583-MONOMER Uniprot:Q74FK9
Length = 470
Score = 146 (56.5 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 34/102 (33%), Positives = 62/102 (60%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
VLVVDD+ + L ++L+K Y V T + AL L++ + Y +VI+D+ MP M G
Sbjct: 6 VLVVDDEAIIREGLRRILEKEGYHVETSASGQIALERLQD--ENYGLVITDLKMPGMSGM 63
Query: 80 KLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120
++L+ + L+ ++PVI+++ ++ +++GA DY+ KP
Sbjct: 64 EVLKAIKVLQPEVPVIIITGFSTVDTAVEAMKNGAFDYIAKP 105
>TAIR|locus:2115070 [details] [associations]
symbol:AT4G37180 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00537470
RefSeq:NP_849513.1 UniGene:At.4657 ProteinModelPortal:F4JRB0
SMR:F4JRB0 PRIDE:F4JRB0 EnsemblPlants:AT4G37180.2 GeneID:829872
KEGG:ath:AT4G37180 OMA:SCRNDET Uniprot:F4JRB0
Length = 363
Score = 144 (55.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 34/84 (40%), Positives = 52/84 (61%)
Query: 199 KKARVVWSIDLHQKFVKAVNQIGFDKVG-PKKILDLMNVPWLTRENVASHLQKYRLYLTR 257
K+ R WS +LH+KFV A++++G +V PK+I DLM V LT + V SHLQKYR+++ +
Sbjct: 216 KEQRRRWSQELHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMHIRK 275
Query: 258 LQKDELKTSVG----GIKQKDSPS 277
KT G+ +++S S
Sbjct: 276 HPLHPTKTLSSSDQPGVLERESQS 299
>UNIPROTKB|Q1D948 [details] [associations]
symbol:MXAN_2606 "Sensor histidine kinase/response
regulator" species:246197 "Myxococcus xanthus DK 1622" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0023014
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642 RefSeq:YP_630825.1
ProteinModelPortal:Q1D948 IntAct:Q1D948 STRING:Q1D948
GeneID:4101819 KEGG:mxa:MXAN_2606 PATRIC:22647741 OMA:EMEIEIY
ProtClustDB:CLSK955309 BioCyc:MXAN246197:GIWU-2583-MONOMER
Uniprot:Q1D948
Length = 970
Score = 150 (57.9 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 51/158 (32%), Positives = 77/158 (48%)
Query: 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALS-LLRERKDGYDIVISDVNM 73
P R++VV+DD L ++L + Y V D LRER D +++SDV M
Sbjct: 595 PESPRIMVVEDDPEIRSFLARLLAQ-HYRVMEAINGDDGRQRALRERPD---LILSDVMM 650
Query: 74 PDMDGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIW 130
P M G ++L + + +D+PVI+++ E + ++G+ GA DYL KP EL
Sbjct: 651 PVMSGLQMLTALRNDPQTVDIPVILLTARQEVTAKVEGLGTGANDYLGKPFSPNELLARI 710
Query: 131 QHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPL 168
+ R + VR EN E +I + SG V PL
Sbjct: 711 ETQLRLREAAVRAAEN-ERLAAIGLLTSGFAHEVRNPL 747
>TIGR_CMR|CHY_1413 [details] [associations]
symbol:CHY_1413 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_360245.1
ProteinModelPortal:Q3AC89 SMR:Q3AC89 STRING:Q3AC89 GeneID:3728069
KEGG:chy:CHY_1413 PATRIC:21275957 OMA:EHAWIAT
BioCyc:CHYD246194:GJCN-1412-MONOMER Uniprot:Q3AC89
Length = 228
Score = 138 (53.6 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 31/107 (28%), Positives = 61/107 (57%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+VDD+ ++L L+K + V ++AL E K D++I D+ +P++DG
Sbjct: 4 ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHK--IDLIILDLMLPEIDGM 61
Query: 80 KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
++ + + +P+IM++ GE + G++ GA DY++KP +E+
Sbjct: 62 EIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREV 108
>UNIPROTKB|Q8ECB3 [details] [associations]
symbol:flrC "Two component signal transduction system
controlling flagella biosynthesis Sigma54-dependent response
regulator FlrC" species:211586 "Shewanella oneidensis MR-1"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 134 (52.2 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 41/162 (25%), Positives = 82/162 (50%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+V+DD + + L L Y+ +A+ L++ + +D+VISDV MP + G
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALKQHQ--FDLVISDVQMPGIGG 62
Query: 79 FKLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN-IWQHVFRK 136
LL ++ LPV++M+ + ++ GA DYL KP + L N + +++ K
Sbjct: 63 LGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLPLK 122
Query: 137 KIHEVRDIENIEGFESIHMTR--SGSDQSVD--GPLLTGEDL 174
+ + + + + + + + + SD SV GP +G+++
Sbjct: 123 QNRDQPVVADEKSLSLLSLAQRVAASDASVMILGPSGSGKEV 164
Score = 56 (24.8 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 458 VDTFPVQTTSPIVNHQPFE--PIARTTSSMKSQGLNLSCIPDLE--AAQRNINWGVGSSL 513
++ FP+ T P +N +P + P+AR + ++ LN+ +P+ + A +R ++ ++
Sbjct: 289 INVFPL--TWPALNQRPADILPLARHLLTKHAKALNVVDLPEFDDAACRRLLSHRWPGNV 346
Query: 514 TSLDEDLQ 521
LD +Q
Sbjct: 347 RELDNVVQ 354
>TIGR_CMR|SO_3230 [details] [associations]
symbol:SO_3230 "flagellar regulatory protein C"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092 KO:K10943
ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 134 (52.2 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 41/162 (25%), Positives = 82/162 (50%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+V+DD + + L L Y+ +A+ L++ + +D+VISDV MP + G
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALKQHQ--FDLVISDVQMPGIGG 62
Query: 79 FKLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN-IWQHVFRK 136
LL ++ LPV++M+ + ++ GA DYL KP + L N + +++ K
Sbjct: 63 LGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLPLK 122
Query: 137 KIHEVRDIENIEGFESIHMTR--SGSDQSVD--GPLLTGEDL 174
+ + + + + + + + + SD SV GP +G+++
Sbjct: 123 QNRDQPVVADEKSLSLLSLAQRVAASDASVMILGPSGSGKEV 164
Score = 56 (24.8 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 458 VDTFPVQTTSPIVNHQPFE--PIARTTSSMKSQGLNLSCIPDLE--AAQRNINWGVGSSL 513
++ FP+ T P +N +P + P+AR + ++ LN+ +P+ + A +R ++ ++
Sbjct: 289 INVFPL--TWPALNQRPADILPLARHLLTKHAKALNVVDLPEFDDAACRRLLSHRWPGNV 346
Query: 514 TSLDEDLQ 521
LD +Q
Sbjct: 347 RELDNVVQ 354
>UNIPROTKB|Q1CXR3 [details] [associations]
symbol:difD "Fibril biogenesis regulator DifD"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_634810.1
ProteinModelPortal:Q1CXR3 SMR:Q1CXR3 IntAct:Q1CXR3 STRING:Q1CXR3
GeneID:4104566 KEGG:mxa:MXAN_6693 PATRIC:22655877 OMA:PFQAPKV
ProtClustDB:CLSK947176 BioCyc:MXAN246197:GIWU-6635-MONOMER
Uniprot:Q1CXR3
Length = 122
Score = 123 (48.4 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKD-GYDIVISDVNMPDMD 77
RVLVVDD + +++ + +EV G A + L + + K+ D+ D+ MP
Sbjct: 4 RVLVVDDAIFMRNMIKDIFASGGFEVV--GEAANGLEAVEKYKELKPDLTTMDIVMPFKS 61
Query: 78 GFKLL-EHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G + E + + VIM S G+ S VM+ ++ GA D+++KP R +++
Sbjct: 62 GIEATREIIKADSSAVVIMCSALGQESLVMEAIEAGASDFIVKPFRAEDV 111
>UNIPROTKB|Q74CQ4 [details] [associations]
symbol:cheY-4 "Response receiver CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P04042 RefSeq:NP_952670.1 ProteinModelPortal:Q74CQ4
GeneID:2687423 KEGG:gsu:GSU1619 PATRIC:22026087 OMA:DIICMDM
ProtClustDB:CLSK828443 BioCyc:GSUL243231:GH27-1579-MONOMER
Uniprot:Q74CQ4
Length = 119
Score = 123 (48.4 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 33/114 (28%), Positives = 61/114 (53%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY-DIVISDVNMPDMD 77
+VL+VDD ++ + L+K+L + S E G ++ + +R + + DI+ D+NMP MD
Sbjct: 3 KVLIVDDSISVARQLDKILSE-SGEFQVVGHGKNGMEAIRMHQTEHPDIICMDMNMPGMD 61
Query: 78 GFKLLEH-VGLEMDLPVIMM-SVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
G L V L+ ++ V+M+ S+ G + + ++ GA + KP + I
Sbjct: 62 GLTALRTLVALDKNIKVVMVTSLGGVGDKFTEALRLGARTVISKPFEADNVLKI 115
>TIGR_CMR|GSU_1619 [details] [associations]
symbol:GSU_1619 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P04042 RefSeq:NP_952670.1 ProteinModelPortal:Q74CQ4
GeneID:2687423 KEGG:gsu:GSU1619 PATRIC:22026087 OMA:DIICMDM
ProtClustDB:CLSK828443 BioCyc:GSUL243231:GH27-1579-MONOMER
Uniprot:Q74CQ4
Length = 119
Score = 123 (48.4 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 33/114 (28%), Positives = 61/114 (53%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY-DIVISDVNMPDMD 77
+VL+VDD ++ + L+K+L + S E G ++ + +R + + DI+ D+NMP MD
Sbjct: 3 KVLIVDDSISVARQLDKILSE-SGEFQVVGHGKNGMEAIRMHQTEHPDIICMDMNMPGMD 61
Query: 78 GFKLLEH-VGLEMDLPVIMM-SVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
G L V L+ ++ V+M+ S+ G + + ++ GA + KP + I
Sbjct: 62 GLTALRTLVALDKNIKVVMVTSLGGVGDKFTEALRLGARTVISKPFEADNVLKI 115
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 123 (48.4 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 33/117 (28%), Positives = 60/117 (51%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTT-CGLARDALSLLRERKDGYDIVISDVNMPDMD 77
RV++VDD L +L +L+ YEV +A+ R+ + D+V D+ MP +
Sbjct: 4 RVMIVDDALFMRNMLRGILEDAGYEVVAEASDGAEAVVTFRDVRP--DVVTLDIIMPVKN 61
Query: 78 GFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
G + L + ++ V++ S G+ S V K GA D++LKP + ++++ + V
Sbjct: 62 GIEALREIMAIDPKARVVICSAVGQESLVDKARSVGAKDFILKPFNPERVKDVMKQV 118
>UNIPROTKB|P0AFU4 [details] [associations]
symbol:glrR "GlrR DNA-binding transcriptional activator"
species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IEP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IMP] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0005737
GO:GO:0006355 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:U36841 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
EMBL:M16778 EMBL:S67014 EMBL:Z21843 PIR:A65033 RefSeq:NP_417049.1
RefSeq:YP_490782.1 ProteinModelPortal:P0AFU4 SMR:P0AFU4
IntAct:P0AFU4 MINT:MINT-1317436 PRIDE:P0AFU4
EnsemblBacteria:EBESCT00000000551 EnsemblBacteria:EBESCT00000014286
GeneID:12930208 GeneID:947042 KEGG:ecj:Y75_p2507 KEGG:eco:b2554
PATRIC:32120507 EchoBASE:EB1262 EcoGene:EG11285 KO:K07715
OMA:FAEIQKH ProtClustDB:PRK15115 BioCyc:EcoCyc:EG11285-MONOMER
BioCyc:ECOL316407:JW2538-MONOMER Genevestigator:P0AFU4
Uniprot:P0AFU4
Length = 444
Score = 145 (56.1 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 37/108 (34%), Positives = 55/108 (50%)
Query: 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMP 74
PA L L+VDDD LK+L L Y V T + L +L K D+VISD+ M
Sbjct: 5 PAHL--LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK--VDLVISDLRMD 60
Query: 75 DMDGFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI 121
+MDG +L + ++ +PVI+++ G + Q G +L KP+
Sbjct: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV 108
>SGD|S000001249 [details] [associations]
symbol:SKN7 "Nuclear response regulator and transcription
factor" species:4932 "Saccharomyces cerevisiae" [GO:0043565
"sequence-specific DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IDA;IMP] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043619 "regulation of transcription from RNA polymerase II
promoter in response to oxidative stress" evidence=IMP] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA;IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IMP;IDA;IPI] [GO:0008361 "regulation of cell
size" evidence=IMP] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IMP;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000304 "response to singlet oxygen"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=TAS] InterPro:IPR000232 InterPro:IPR001789
InterPro:IPR014402 Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595
PRINTS:PR00056 PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415
SMART:SM00448 SGD:S000001249 GO:GO:0005634 EMBL:BK006934
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0008361 GO:GO:0006970 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000304
GO:GO:0043619 EMBL:U00029 RefSeq:NP_012078.3 GeneID:856615
KEGG:sce:YHR208W KO:K00826 GeneTree:ENSGT00610000087034
RefSeq:NP_012076.3 GeneID:856613 KEGG:sce:YHR206W KO:K15859
OMA:QHGMNDI OrthoDB:EOG4TMV98 EMBL:U00485 EMBL:X83031 EMBL:AY723828
PIR:A49344 ProteinModelPortal:P38889 SMR:P38889 DIP:DIP-2403N
IntAct:P38889 STRING:P38889 PaxDb:P38889 PeptideAtlas:P38889
EnsemblFungi:YHR206W CYGD:YHR206w HOGENOM:HOG000248776
NextBio:982535 Genevestigator:P38889 GermOnline:YHR206W
Uniprot:P38889
Length = 622
Score = 147 (56.8 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 38/125 (30%), Positives = 68/125 (54%)
Query: 17 GLRVLVVDDDLAWLKILEKMLKK--CSYEVTTCGLARDALSLLRERKDGYDIVISDVNMP 74
G VL+V+DD +++ K L+K C+ +V + GL+ A+S L + + YD+V+ D+ MP
Sbjct: 376 GFHVLLVEDDAVSIQLCSKFLRKYGCTVQVVSDGLS--AISTLEKYR--YDLVLMDIVMP 431
Query: 75 DMDGFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
++DG V + + P+I M+ + ++ +QHG D L KP +L +I
Sbjct: 432 NLDGATATSIVRSFDNETPIIAMTGNIMNQDLITYLQHGMNDILAKPFTRDDLHSILIRY 491
Query: 134 FRKKI 138
+ +I
Sbjct: 492 LKDRI 496
>UNIPROTKB|Q1D8M8 [details] [associations]
symbol:phoP2 "DNA-binding response regulator PhoP2"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_630995.1
ProteinModelPortal:Q1D8M8 IntAct:Q1D8M8 STRING:Q1D8M8
GeneID:4100623 KEGG:mxa:MXAN_2778 PATRIC:22648097 OMA:FSIHTIR
ProtClustDB:CLSK756494 BioCyc:MXAN246197:GIWU-2755-MONOMER
Uniprot:Q1D8M8
Length = 238
Score = 138 (53.6 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 37/109 (33%), Positives = 60/109 (55%)
Query: 20 VLVVDDDLAWLKI-LEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+L+V+DD A L++ L L Y V RDA LL+ER +D++I DV +P DG
Sbjct: 14 ILIVEDD-AHLRVGLRDNLLDEGYLVAEAPSTRDAERLLQER--AFDLLILDVMLPGEDG 70
Query: 79 FKLLEHVGLEMDLP-VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
+ + + + V+M++ +++G + GA DYL KP R++EL
Sbjct: 71 YSFCRRLRTQGNKSMVLMLTARSLEDDILRGFEVGAQDYLTKPYRLREL 119
>UNIPROTKB|Q485M3 [details] [associations]
symbol:flrC "Flagellar regulatory protein C" species:167879
"Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 144 (55.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 44/163 (26%), Positives = 77/163 (47%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVV+DD + L L Y AL L+ + DIVISDV M M G
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQH--VDIVISDVQMGGMSG 62
Query: 79 FKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
LL+ + +LPV++M+ G ++ ++ GAC+Y+ KP + L N+ +
Sbjct: 63 LSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNMVSQYIPPQ 122
Query: 138 IHEVRD--IENIEGFESIHMTR--SGSDQSVD--GPLLTGEDL 174
+ D + + E + + + + +D SV GP +G+++
Sbjct: 123 VVNKNDPIVADKRSLELLTLAKKVASTDASVMILGPSGSGKEV 165
>TIGR_CMR|CPS_1500 [details] [associations]
symbol:CPS_1500 "flagellar regulatory protein C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 144 (55.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 44/163 (26%), Positives = 77/163 (47%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVV+DD + L L Y AL L+ + DIVISDV M M G
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQH--VDIVISDVQMGGMSG 62
Query: 79 FKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
LL+ + +LPV++M+ G ++ ++ GAC+Y+ KP + L N+ +
Sbjct: 63 LSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNMVSQYIPPQ 122
Query: 138 IHEVRD--IENIEGFESIHMTR--SGSDQSVD--GPLLTGEDL 174
+ D + + E + + + + +D SV GP +G+++
Sbjct: 123 VVNKNDPIVADKRSLELLTLAKKVASTDASVMILGPSGSGKEV 165
>TIGR_CMR|GSU_0963 [details] [associations]
symbol:GSU_0963 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 HSSP:P06143 RefSeq:NP_952017.2 GeneID:2687572
KEGG:gsu:GSU0963 PATRIC:22024702 ProtClustDB:CLSK828118
BioCyc:GSUL243231:GH27-974-MONOMER Uniprot:Q74EJ9
Length = 464
Score = 144 (55.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 43/157 (27%), Positives = 83/157 (52%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-YDIVISDVNMPDMD 77
R++++D++ +++E +L Y V G R + + E K G +D+V+SD+ MP MD
Sbjct: 6 RIMLIDNEEGLCRMMEAVLADSGYAVK--GYTR-SFEAVEEFKAGDWDLVVSDIKMPGMD 62
Query: 78 GFKLLEHVGLEMDL-PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL----RNIWQH 132
G ++L+ + + L PVIM++ ++ ++ GA D + KP +EL +N +H
Sbjct: 63 GLEVLQRIKAKDPLVPVIMITAYATVETSIQALRRGAYDMVTKPFEPEELLYRVKNALKH 122
Query: 133 VFRKKIHEVRDI-ENIEG---FESIHMTRSGSDQSVD 165
+ + E R++ E + G F++I +G +D
Sbjct: 123 T--QLLEENRELREELVGKFRFDNIIGASTGLKDVLD 157
>TAIR|locus:2085984 [details] [associations]
symbol:AT3G25790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
EMBL:AB028607 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237574 ProtClustDB:CLSN2687791 IPI:IPI00546166
RefSeq:NP_566778.1 UniGene:At.37325 ProteinModelPortal:Q9LS00
SMR:Q9LS00 EnsemblPlants:AT3G25790.1 GeneID:822170
KEGG:ath:AT3G25790 TAIR:At3g25790 InParanoid:Q9LS00 OMA:AYKREIS
PhylomeDB:Q9LS00 Genevestigator:Q9LS00 Uniprot:Q9LS00
Length = 357
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 193 GDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVG-PKKILDLMNVPWLTRENVASHLQKY 251
G +K R WS +LH++F+ A+ Q+G V PK+I D+M V LT + V SHLQKY
Sbjct: 189 GGRRGQRKNRRCWSQELHRRFLNALKQLGGPHVATPKQIRDIMKVDGLTNDEVKSHLQKY 248
Query: 252 RLYLTR 257
RL+ R
Sbjct: 249 RLHARR 254
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 147 (56.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 41/135 (30%), Positives = 67/135 (49%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
L VL+VDD K++ +L+ + VT G +AL+ + ++ +D+V+ DV MP MD
Sbjct: 546 LSVLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIG--REAFDLVLMDVQMPVMD 603
Query: 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKG-----VQHGACDYLLKPIRMKELRN-IWQ 131
GF+ + + + + T+R + G ++ GA DYL KP+ ELR I +
Sbjct: 604 GFEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLAKPVNFSELRRVISR 663
Query: 132 HVFRKKIHEVRDIEN 146
H R+ EN
Sbjct: 664 HCCRESKPSALSAEN 678
>UNIPROTKB|P0AFB8 [details] [associations]
symbol:glnG "NtrC transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0050906 "detection of
stimulus involved in sensory perception" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0009399 "nitrogen fixation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0009399 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:L19201 eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:X05173
EMBL:D16509 PIR:B30377 RefSeq:NP_418304.1 RefSeq:YP_491582.1
ProteinModelPortal:P0AFB8 SMR:P0AFB8 IntAct:P0AFB8
EnsemblBacteria:EBESCT00000001207 EnsemblBacteria:EBESCT00000001208
EnsemblBacteria:EBESCT00000001209 EnsemblBacteria:EBESCT00000015316
GeneID:12933634 GeneID:948361 KEGG:ecj:Y75_p3318 KEGG:eco:b3868
PATRIC:32123239 EchoBASE:EB0380 EcoGene:EG10385 KO:K07712
OMA:ARGQSNL ProtClustDB:PRK10923 BioCyc:EcoCyc:PROTEIN-NRI
BioCyc:ECOL316407:JW3839-MONOMER BindingDB:P0AFB8 ChEMBL:CHEMBL3552
Genevestigator:P0AFB8 GO:GO:0050906 TIGRFAMs:TIGR01818
Uniprot:P0AFB8
Length = 469
Score = 144 (55.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/107 (34%), Positives = 53/107 (49%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V VVDDD + +LE+ L TT + L L + D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP--DVLLSDIRMPGMDGL 63
Query: 80 KLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
LL+ + LPVI+M+ + + Q GA DYL KP + E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 43/136 (31%), Positives = 77/136 (56%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTC-GLARDALSLLRERKDGYDIVISDVNMPDM 76
+ VLVVDD+ ++L ML + +T GL +AL +L ++ D+++ D+ MP++
Sbjct: 5 ISVLVVDDEEMNRELLSVMLDGLATPITAQNGL--EALRVL-DKNSAIDLILLDLEMPEL 61
Query: 77 DGFKLLEHVG---LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR-NIWQH 132
+GF L + L D+PVI+++ + V + ++ GA D+L KP +ELR + H
Sbjct: 62 NGFATLATLKKHPLWCDIPVIVLTASKD--EVTRTLRLGANDFLAKPYDTEELRLRVMNH 119
Query: 133 VFRKKIHEV-RDIENI 147
V KK+ ++ +D+ I
Sbjct: 120 VRAKKLVDLSQDVNGI 135
>UNIPROTKB|Q0C4H5 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CP000158
GenomeReviews:CP000158_GR KO:K03413 RefSeq:YP_759368.1
ProteinModelPortal:Q0C4H5 STRING:Q0C4H5 GeneID:4290241
KEGG:hne:HNE_0639 PATRIC:32214082 OMA:WNMPVMN
BioCyc:HNEP228405:GI69-682-MONOMER Uniprot:Q0C4H5
Length = 121
Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/103 (27%), Positives = 54/103 (52%)
Query: 21 LVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFK 80
LVVDD K+ ++++ + VT G +AL + RE D ++ D NMP M+G
Sbjct: 5 LVVDDSRVVRKVASRIVRDLGFSVTEAGDGAEALKMCRESMP--DAILLDWNMPTMNGID 62
Query: 81 LLEHVGLEMD--LP-VIMMSVDGETSRVMKGVQHGACDYLLKP 120
L + E +P ++ S++ + + + ++ GA ++++KP
Sbjct: 63 FLRALRREEGGKVPRIVFCSIENDPEHINEALRSGADEFIMKP 105
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 133 (51.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 29/104 (27%), Positives = 60/104 (57%)
Query: 65 DIVISDVNMPDMDGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI 121
+++I+D MP M G+ LL+ + D+PV++MS D SR+ + ++ GA ++ LKP+
Sbjct: 70 NLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKPV 129
Query: 122 RMKELRNIWQHVFRKKIHE-VRDIENIEG-FESIHMTRSGSDQS 163
R+ ++ + H+ + + E + +N++ ES + + S+ S
Sbjct: 130 RLSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNSSNPTSENS 173
>TIGR_CMR|CPS_0397 [details] [associations]
symbol:CPS_0397 "nitrogen regulation protein NR(I)"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006808 "regulation of
nitrogen utilization" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0009399 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K07712 GO:GO:0050906 TIGRFAMs:TIGR01818 RefSeq:YP_267155.1
ProteinModelPortal:Q489V9 SMR:Q489V9 STRING:Q489V9 GeneID:3520592
KEGG:cps:CPS_0397 PATRIC:21464159 OMA:KELAVEP
BioCyc:CPSY167879:GI48-492-MONOMER Uniprot:Q489V9
Length = 466
Score = 143 (55.4 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY-DIVISDVNMPDMD 77
+V +VDDD + +LEK + +C A +LL + G +I+ISD+ MP++D
Sbjct: 5 QVWIVDDDSSIRWVLEKAFANANI---SCAAFESAENLLIALEHGQPEIIISDIRMPNID 61
Query: 78 GFKLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
G +LL+ + + +PVI+M+ + + Q GA +YL KP + E N+
Sbjct: 62 GMELLKRLNKQHSHIPVIIMTAHSDLDSAVNAYQGGAFEYLPKPFDIDEAINL 114
>UNIPROTKB|O69730 [details] [associations]
symbol:tcrX "Probable transcriptional regulatory protein
TcrX" species:1773 "Mycobacterium tuberculosis" [GO:0005515
"protein binding" evidence=IPI] [GO:0010106 "cellular response to
iron ion starvation" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677 EMBL:BX842584
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0010106
HOGENOM:HOG000034815 HSSP:Q9WYN0 KO:K02483 EMBL:X99370 PIR:F70801
RefSeq:NP_218282.1 RefSeq:YP_006517260.1 ProteinModelPortal:O69730
SMR:O69730 EnsemblBacteria:EBMYCT00000002612 GeneID:13317384
GeneID:886100 KEGG:mtu:Rv3765c KEGG:mtv:RVBD_3765c PATRIC:18156979
TubercuList:Rv3765c OMA:TELLSMA ProtClustDB:CLSK792706
Uniprot:O69730
Length = 234
Score = 136 (52.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 32/108 (29%), Positives = 58/108 (53%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
VLVVDD+ +++ L+ + +TT G A++ R ++ D+V+ DV +PDM G
Sbjct: 11 VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRP--DVVVLDVMLPDMSGL 68
Query: 80 KLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
+L + E LPV++++ + G+ G DY+ KP ++E+
Sbjct: 69 DVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEV 116
>UNIPROTKB|Q9KT55 [details] [associations]
symbol:VC_1050 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM
HSSP:Q56312 PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 37/126 (29%), Positives = 67/126 (53%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+VDDD + ++ + L+K Y+V D L LR+ + D+++ D++MP ++G
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEP--DLILCDLSMPVLNGI 84
Query: 80 KLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKK 137
+ +E V LP++++S E + V K ++ G D+L KPI L + + V
Sbjct: 85 EFVEEVSSSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPITNHSHLASAIEKVLAND 144
Query: 138 IHEVRD 143
H+ RD
Sbjct: 145 DHQ-RD 149
>TIGR_CMR|VC_1050 [details] [associations]
symbol:VC_1050 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM HSSP:Q56312
PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 37/126 (29%), Positives = 67/126 (53%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+VDDD + ++ + L+K Y+V D L LR+ + D+++ D++MP ++G
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEP--DLILCDLSMPVLNGI 84
Query: 80 KLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKK 137
+ +E V LP++++S E + V K ++ G D+L KPI L + + V
Sbjct: 85 EFVEEVSSSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPITNHSHLASAIEKVLAND 144
Query: 138 IHEVRD 143
H+ RD
Sbjct: 145 DHQ-RD 149
>TIGR_CMR|GSU_2214 [details] [associations]
symbol:GSU_2214 "protein-glutamate methylesterase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006935
"chemotaxis" evidence=ISS] [GO:0008984 "protein-glutamate
methylesterase activity" evidence=ISS] HAMAP:MF_00099
InterPro:IPR000673 InterPro:IPR001789 InterPro:IPR008248
Pfam:PF00072 Pfam:PF01339 PIRSF:PIRSF000876 PROSITE:PS50110
PROSITE:PS50122 SMART:SM00448 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2201
HOGENOM:HOG000151424 KO:K03412 GO:GO:0008984 Gene3D:3.40.50.180
SUPFAM:SSF52738 RefSeq:NP_953263.1 ProteinModelPortal:P62640
GeneID:2687095 KEGG:gsu:GSU2214 PATRIC:22027283 OMA:SQHMPAG
ProtClustDB:CLSK828757 BioCyc:GSUL243231:GH27-2152-MONOMER
Uniprot:P62640
Length = 371
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 41/122 (33%), Positives = 64/122 (52%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKD-GYDIVISDVNMPDM 76
+RV+V+DD + + KML+ EV G A D +R+ D D+V D+ MP M
Sbjct: 4 IRVVVIDDSAYSRRAITKMLESMP-EVEVIGYATDGEEGIRKIIDLKPDLVTLDLEMPRM 62
Query: 77 DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR--MKELRNIWQHVF 134
DGF LL V VI++S E +V + ++ GA D++ KP + +E+ I + +
Sbjct: 63 DGFTLLRIVMEYSPTAVIVISSRSEDEKVFRALELGAVDFVAKPTKGVSEEILTIREDLH 122
Query: 135 RK 136
RK
Sbjct: 123 RK 124
>UNIPROTKB|P96373 [details] [associations]
symbol:kdpE "Transcriptional regulatory protein KdpE"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0040007 GO:GO:0006355 EMBL:BX842575 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034815 KO:K07667 PIR:F70623 RefSeq:NP_215543.1
RefSeq:NP_335494.1 RefSeq:YP_006514389.1 HSSP:P08402
ProteinModelPortal:P96373 SMR:P96373
EnsemblBacteria:EBMYCT00000002976 EnsemblBacteria:EBMYCT00000071258
GeneID:13319591 GeneID:886046 GeneID:925129 KEGG:mtc:MT1056
KEGG:mtu:Rv1027c KEGG:mtv:RVBD_1027c PATRIC:18124070
TubercuList:Rv1027c OMA:RAMQINL ProtClustDB:CLSK790901
Uniprot:P96373
Length = 226
Score = 135 (52.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 36/106 (33%), Positives = 54/106 (50%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
VLV+DD+ L+ L L Y+V T AL E D+VI D+ +PDM G
Sbjct: 4 VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPP--DVVILDLGLPDMSGI 61
Query: 80 KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
+L + + PVI++S ++S ++ + GA DY+ KP M E
Sbjct: 62 DVLGGLRGWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDE 107
>UNIPROTKB|P0AFJ5 [details] [associations]
symbol:phoB "PhoB transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0001108
"bacterial-type RNA polymerase holo enzyme binding" evidence=IMP]
[GO:2000142 "regulation of DNA-dependent transcription, initiation"
evidence=IDA] [GO:0006817 "phosphate ion transport" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:U73857
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
eggNOG:COG0745 HOGENOM:HOG000034819 GO:GO:0001108 EMBL:X04026
PIR:A24256 RefSeq:NP_414933.1 RefSeq:YP_488691.1 PDB:1B00 PDB:1GXP
PDB:1GXQ PDB:1QQI PDB:1ZES PDB:2IYN PDB:2JB9 PDB:2JBA PDB:2Z33
PDB:3T72 PDBsum:1B00 PDBsum:1GXP PDBsum:1GXQ PDBsum:1QQI
PDBsum:1ZES PDBsum:2IYN PDBsum:2JB9 PDBsum:2JBA PDBsum:2Z33
PDBsum:3T72 ProteinModelPortal:P0AFJ5 SMR:P0AFJ5 DIP:DIP-35852N
IntAct:P0AFJ5 MINT:MINT-1313174 EnsemblBacteria:EBESCT00000002796
EnsemblBacteria:EBESCT00000016242 GeneID:12930822 GeneID:945046
KEGG:ecj:Y75_p0387 KEGG:eco:b0399 PATRIC:32115943 EchoBASE:EB0721
EcoGene:EG10728 KO:K07657 OMA:QVLEMGP ProtClustDB:PRK10161
BioCyc:EcoCyc:PHOB-MONOMER BioCyc:ECOL316407:JW0389-MONOMER
EvolutionaryTrace:P0AFJ5 Genevestigator:P0AFJ5 GO:GO:2000142
TIGRFAMs:TIGR02154 Uniprot:P0AFJ5
Length = 229
Score = 135 (52.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 37/157 (23%), Positives = 81/157 (51%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY-DIVISDVNMPDMD 77
R+LVV+D+ +++ +L++ ++ A D S + + + + D+++ D +P
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVE---AEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 78 GFKLLEHVGLEM---DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL----RNIW 130
G + ++H+ E D+PV+M++ GE ++G++ GA DY+ KP KEL + +
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 131 QHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGP 167
+ + + EV +++ + + H +G + GP
Sbjct: 121 RRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGP 157
>TAIR|locus:2157146 [details] [associations]
symbol:AT5G45580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00931042
RefSeq:NP_199371.2 UniGene:At.50506 ProteinModelPortal:F4KEK2
SMR:F4KEK2 PRIDE:F4KEK2 DNASU:834596 EnsemblPlants:AT5G45580.1
GeneID:834596 KEGG:ath:AT5G45580 OMA:YQIEVQR Uniprot:F4KEK2
Length = 264
Score = 137 (53.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 43/123 (34%), Positives = 63/123 (51%)
Query: 200 KARVVWSIDLHQKFVKAVNQIG-FDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRL 258
K R+ W+ DLH +FV AV ++G DK PK +L LM + LT ++ SHLQKYRL +
Sbjct: 7 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRLGQQQG 66
Query: 259 QKDELKTSVGGIKQKDSPSK---DSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNV 315
+K +T K+ S D+ + GI N +H S G F+ ++ V
Sbjct: 67 KKQN-RTEQN--KENAGSSYVHFDNCSQGGISNDSRFDNHQRQS-GNVPFA--EAMRHQV 120
Query: 316 DAK 318
DA+
Sbjct: 121 DAQ 123
>TIGR_CMR|GSU_1671 [details] [associations]
symbol:GSU_1671 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205 RefSeq:NP_952722.1
ProteinModelPortal:Q74CK2 GeneID:2687445 KEGG:gsu:GSU1671
PATRIC:22026193 OMA:IADWLMP ProtClustDB:CLSK740862
BioCyc:GSUL243231:GH27-1671-MONOMER Uniprot:Q74CK2
Length = 322
Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 39/150 (26%), Positives = 74/150 (49%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+VDD+ +LE LK Y+V ++AL + K Y IV++D MP+MDG
Sbjct: 18 ILIVDDNRLLRTMLETSLKSAGYDVVMAENGKEALEIFN--KGYYPIVMTDWVMPEMDGL 75
Query: 80 KLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKPI-------RMKELRNI 129
+L + + +I+++ + V+ G++ GA +YL+KP R+K + I
Sbjct: 76 ELCRAIRADCSGRYTYIILLTSQDSKNDVIAGLEAGADEYLVKPAHQVELLTRLKTAKRI 135
Query: 130 W--QHVFRKKIHEVRDIENIEGFESIHMTR 157
+ +K + E+ ++ I+ ++ R
Sbjct: 136 LDLESSLKKSLEEIGNLSRIDTLTGVYNRR 165
>TIGR_CMR|BA_0924 [details] [associations]
symbol:BA_0924 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605
GO:GO:0001071 HOGENOM:HOG000034816 HSSP:P52934 RefSeq:NP_843430.1
RefSeq:YP_017559.1 RefSeq:YP_027146.1 ProteinModelPortal:Q81UF3
DNASU:1088846 EnsemblBacteria:EBBACT00000010567
EnsemblBacteria:EBBACT00000014513 EnsemblBacteria:EBBACT00000020811
GeneID:1088846 GeneID:2817504 GeneID:2850213 KEGG:ban:BA_0924
KEGG:bar:GBAA_0924 KEGG:bat:BAS0870 KO:K11638 OMA:GEKMGAS
ProtClustDB:CLSK886856 BioCyc:BANT260799:GJAJ-950-MONOMER
BioCyc:BANT261594:GJ7F-988-MONOMER Uniprot:Q81UF3
Length = 225
Score = 134 (52.2 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 45/170 (26%), Positives = 84/170 (49%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRE-RKDGYDIVISDVNMPDM 76
L+V + +DD +I E+ L K +V G A +A + +++ D+++ D +PD
Sbjct: 2 LKVAIAEDDFRVAQIQEEFLLKIK-DVKVMGKALNAKETMELLQREEIDLLLLDNYLPDG 60
Query: 77 DGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
G LL + E ++ VIM++ E + K +++G +YL+KP+ +++ + R
Sbjct: 61 IGTDLLPQIHAEFPNVDVIMVTAANENHMLEKAIRNGVSNYLIKPVTLEKFVRTIEDYKR 120
Query: 136 KK--IHEVRDIEN--IEGFESIHMTRSGSDQSVDGPLLTGEDLTSVRKRK 181
KK +H ++ I+ F I T Q + L TG D +++K K
Sbjct: 121 KKQLLHNNNEVNQTLIDNFFGISQT-----QDIKN-LPTGVDPLTLQKVK 164
>TIGR_CMR|GSU_2484 [details] [associations]
symbol:GSU_2484 "DNA-binding response regulator KdpE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07667
HSSP:P08402 RefSeq:NP_953530.1 ProteinModelPortal:Q74AA6 SMR:Q74AA6
GeneID:2687839 KEGG:gsu:GSU2484 PATRIC:22027811 OMA:HEANAIN
ProtClustDB:CLSK828856 BioCyc:GSUL243231:GH27-2517-MONOMER
Uniprot:Q74AA6
Length = 234
Score = 134 (52.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 36/134 (26%), Positives = 66/134 (49%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L+VDD+ A + L +L + + AL+ + D+++ D+ +PD+DG
Sbjct: 12 RILIVDDEAAIRRFLRTVLDAEEFSLHQAETGHAALAAAAAIRP--DLILLDLGLPDLDG 69
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
+++ + +P+I++SV + + GA DYL KP + EL + V R+ I
Sbjct: 70 VEVIRRIREWSPVPIIVLSVREREDDKVHALDAGADDYLTKPFGIGELLARMRVVLRRSI 129
Query: 139 HEVRD-IENIEGFE 151
+ + I I G E
Sbjct: 130 RQAPEPICRIGGLE 143
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 134 (52.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 31/116 (26%), Positives = 64/116 (55%)
Query: 65 DIVISDVNMPDMDGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI 121
+++I+D MP M G+ LL+ V D+PV++MS + +R+ + ++ GA ++ LKP+
Sbjct: 75 NLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKPV 134
Query: 122 RMKELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSV 177
R+ +L + H+ + K+ + +E E+ +G +V P + +D T++
Sbjct: 135 RLADLNKLKPHMMKTKLKN----QKLEEIETTSKVENGVPTAVADPEI--KDSTNI 184
>TAIR|locus:2170199 [details] [associations]
symbol:AT5G06800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AK226644 IPI:IPI00528070
RefSeq:NP_196298.2 UniGene:At.50439 ProteinModelPortal:Q0WVU3
SMR:Q0WVU3 PRIDE:Q0WVU3 EnsemblPlants:AT5G06800.1 GeneID:830570
KEGG:ath:AT5G06800 TAIR:At5g06800 eggNOG:NOG298644
HOGENOM:HOG000241107 InParanoid:Q0WVU3 OMA:MDNINFE
ProtClustDB:CLSN2918619 Genevestigator:Q0WVU3 Uniprot:Q0WVU3
Length = 375
Score = 139 (54.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 200 KARVVWSIDLHQKFVKAVNQIG-FDKVGPKKILDLMNVPWLTRENVASHLQKYRL--YLT 256
K R+ W+ DLH+KFV+ VN++G DK PK IL M+ LT +V SHLQKYR+ Y+
Sbjct: 192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIAKYMP 251
Query: 257 RLQ--KDELKTSVGGIKQKDS 275
Q K E + + Q D+
Sbjct: 252 ESQEGKFEKRACAKELSQLDT 272
>TAIR|locus:2204518 [details] [associations]
symbol:AT1G14600 "AT1G14600" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AC010657 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AJ630486 EMBL:AY568658
IPI:IPI00523105 RefSeq:NP_172912.3 UniGene:At.41962
ProteinModelPortal:Q700D9 SMR:Q700D9 EnsemblPlants:AT1G14600.1
GeneID:838022 KEGG:ath:AT1G14600 TAIR:At1g14600 eggNOG:NOG329381
HOGENOM:HOG000239342 InParanoid:Q700D9 OMA:NIMNMER
Genevestigator:Q700D9 Uniprot:Q700D9
Length = 255
Score = 135 (52.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 38/119 (31%), Positives = 62/119 (52%)
Query: 202 RVVWSIDLHQKFVKAVNQIGFD-KVGPKKILDLMNVPWLTRENVASHLQKYR-LYLTRLQ 259
R+ W+ +LH+ FV AV+ +G K PK +L +M+V LT +V SHLQ YR +T L
Sbjct: 25 RLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLG 84
Query: 260 KDELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNG--GYRFSGSNSVVQNVD 316
K E +S +++ +++ + ++++VH ND G + F S N D
Sbjct: 85 KPEESSSPSSRRRRRQDNEEDH----LHDNLSVHARNDCLLGFHSFNFREQTSATDNDD 139
>UNIPROTKB|Q9KNL8 [details] [associations]
symbol:VC_2714 "Transcriptional regulator OmpR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 134 (52.2 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 35/124 (28%), Positives = 67/124 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VLVVDDD +LE+ L + ++V + LL ++ + +++ D+ +P DG
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLT--RENFHLMVLDLMLPGEDG 63
Query: 79 FKLLEHVGLEMDL-PVIMMSVDG-ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
+ + ++ P++M++ G E R++ G++ GA DYL KP +EL + V R+
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIV-GLEVGADDYLPKPFNPRELLARIKAVLRR 122
Query: 137 KIHE 140
++ E
Sbjct: 123 QVIE 126
>TIGR_CMR|VC_2714 [details] [associations]
symbol:VC_2714 "transcriptional regulator OmpR,"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 134 (52.2 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 35/124 (28%), Positives = 67/124 (54%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VLVVDDD +LE+ L + ++V + LL ++ + +++ D+ +P DG
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLT--RENFHLMVLDLMLPGEDG 63
Query: 79 FKLLEHVGLEMDL-PVIMMSVDG-ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
+ + ++ P++M++ G E R++ G++ GA DYL KP +EL + V R+
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIV-GLEVGADDYLPKPFNPRELLARIKAVLRR 122
Query: 137 KIHE 140
++ E
Sbjct: 123 QVIE 126
>DICTYBASE|DDB_G0282927 [details] [associations]
symbol:dhkL "histidine kinase L" species:44689
"Dictyostelium discoideum" [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0023014 "signal transduction by
phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0004673 "protein histidine kinase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
"kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113
SMART:SM00091 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 InterPro:IPR001610 dictyBase:DDB_G0282927
GO:GO:0005525 GO:GO:0005524 GenomeReviews:CM000153_GR GO:GO:0016020
GO:GO:0006355 GO:GO:0035556 GO:GO:0003924 GO:GO:0006184
GO:GO:0005622 EMBL:AAFI02000049 GO:GO:0023014 SMART:SM00086
TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
EMBL:AF362373 EMBL:AF258796 RefSeq:XP_639305.1
ProteinModelPortal:Q54RP6 EnsemblProtists:DDB0191389 GeneID:8623876
KEGG:ddi:DDB_G0282927 OMA:FIERNDT Uniprot:Q54RP6
Length = 1709
Score = 147 (56.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 39/118 (33%), Positives = 63/118 (53%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERK-DGYDIVISDVNMPDMD 77
+VLVVDD+ ++IL KML+ EV + DAL+ + + D YD + D+ MPDMD
Sbjct: 1570 KVLVVDDNHINIQILSKMLQTVGCEVDSVLSGADALAKINQSSGDSYDAIFLDIQMPDMD 1629
Query: 78 GFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQ-----HGACDYLLKPIRMKELRNI 129
GF++ + E + +++ T+ V K Q G D++ KPI+ E++ I
Sbjct: 1630 GFQVSRKIREREKKFSLPRVAIIATTANVFKEDQLKCFDAGMDDFISKPIKRAEIKEI 1687
>TIGR_CMR|SO_1558 [details] [associations]
symbol:SO_1558 "phosphate regulon response regulator PhoB"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
HOGENOM:HOG000034819 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 RefSeq:NP_717171.2 ProteinModelPortal:Q8EGP1
GeneID:1169364 KEGG:son:SO_1558 PATRIC:23522760
ProtClustDB:CLSK906318 Uniprot:Q8EGP1
Length = 229
Score = 133 (51.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 36/136 (26%), Positives = 73/136 (53%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L+V+D+LA ++L ++++ + + A++LL+E D+++ D P G
Sbjct: 4 RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYP--DLILLDWMFPGGSG 61
Query: 79 FKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135
+L + + + +P+IM++ GE +KG++ GA DY+ KP KEL + V R
Sbjct: 62 IQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLR 121
Query: 136 K----KIHEVRDIENI 147
+ ++ E D++ +
Sbjct: 122 RSAPTRLEETIDVQGL 137
>TAIR|locus:2045761 [details] [associations]
symbol:AT2G01060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006837
EMBL:AF370550 EMBL:AY084725 EMBL:BT000013 IPI:IPI00544604
PIR:B84420 RefSeq:NP_178216.1 UniGene:At.24449
ProteinModelPortal:Q9SJW0 SMR:Q9SJW0 EnsemblPlants:AT2G01060.1
GeneID:814630 KEGG:ath:AT2G01060 TAIR:At2g01060 eggNOG:NOG329415
InParanoid:Q9SJW0 OMA:TNELHER PhylomeDB:Q9SJW0
ProtClustDB:CLSN2683513 ArrayExpress:Q9SJW0 Genevestigator:Q9SJW0
Uniprot:Q9SJW0
Length = 286
Score = 136 (52.9 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 194 DASSTKKARVVWSIDLHQKFVKAVNQIGF-DKVGPKKILDLMNVPWLTRENVASHLQKYR 252
++S K R+ W+ +LH++FV AV Q+G D+ PK +L +M V LT +V SHLQKYR
Sbjct: 9 NSSHASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 68
Query: 253 L--YLTRLQKDELKT 265
L YL + KT
Sbjct: 69 LAKYLPDSSSEGKKT 83
>UNIPROTKB|Q45976 [details] [associations]
symbol:divK "Cell division response regulator DivK"
species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
Uniprot:Q45976
Length = 125
Score = 117 (46.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 32/108 (29%), Positives = 58/108 (53%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VL+V+D+ +K+ +L+ YE ALS+ RE K D+++ D+ +P++ G
Sbjct: 4 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 61
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKG----VQHGACD-YLLKPI 121
++ + + + DL I V T+ MKG ++ G C+ Y+ KPI
Sbjct: 62 LEVTKWLKEDDDLAHI--PVVAVTAFAMKGDEERIREGGCEAYISKPI 107
>TIGR_CMR|CPS_3245 [details] [associations]
symbol:CPS_3245 "sigma 54-dependent DNA-binding response
regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 RefSeq:YP_269935.1
ProteinModelPortal:Q47Z35 STRING:Q47Z35 GeneID:3518970
KEGG:cps:CPS_3245 PATRIC:21469467 OMA:YAKEENK
ProtClustDB:CLSK749831 BioCyc:CPSY167879:GI48-3288-MONOMER
Uniprot:Q47Z35
Length = 488
Score = 140 (54.3 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 34/104 (32%), Positives = 59/104 (56%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L VDD+ L+ LE++ KK + T +DAL L+ E D+++SD NMP+MDG
Sbjct: 8 RILFVDDEPEILRSLERITKKLDAVILTASSGQDALDLINECP--VDVIVSDFNMPNMDG 65
Query: 79 FKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGAC-DYLLKP 120
+LLE V + + ++++ G+ ++ + +G +L KP
Sbjct: 66 NQLLEQVAKISPETVRMVLTGHGDMEMIVNLINNGHIWGFLQKP 109
>TIGR_CMR|GSU_2534 [details] [associations]
symbol:GSU_2534 "sensory box/response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR000014 InterPro:IPR001054 InterPro:IPR001789
Pfam:PF00072 Pfam:PF13188 PROSITE:PS50110 SMART:SM00091
SMART:SM00448 InterPro:IPR001610 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000167205 RefSeq:NP_953580.1 ProteinModelPortal:Q74A56
GeneID:2687798 KEGG:gsu:GSU2534 PATRIC:22027917 OMA:FESVIDW
ProtClustDB:CLSK828874 BioCyc:GSUL243231:GH27-2510-MONOMER
Uniprot:Q74A56
Length = 452
Score = 139 (54.0 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 29/107 (27%), Positives = 62/107 (57%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+R+L ++D+ A ++L+K L + Y+V L++L YD++++D +MP
Sbjct: 7 IRILYMEDNPALARLLQKSLLRKGYQVDVVADGAAGLTVLEGTS--YDLILADYDMPVCG 64
Query: 78 GFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRM 123
G +++ + +D+PVIM++ +G ++ ++ GA DY++K + M
Sbjct: 65 GIEVIATLAARGVDIPVIMVTGNGSEKVAVEALKQGAADYVVKDLEM 111
>ASPGD|ASPL0000043398 [details] [associations]
symbol:AN9048 species:162425 "Emericella nidulans"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003018 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00065 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 EMBL:BN001307
GO:GO:0005622 GO:GO:0023014 EMBL:AACD01000168 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 RefSeq:XP_682317.1
ProteinModelPortal:Q5ARN2 EnsemblFungi:CADANIAT00007805
GeneID:2868194 KEGG:ani:AN9048.2 HOGENOM:HOG000178140 OMA:EVPIYSP
OrthoDB:EOG415KNG Uniprot:Q5ARN2
Length = 1109
Score = 144 (55.7 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 39/131 (29%), Positives = 70/131 (53%)
Query: 6 SSPRNDTFNPA----GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERK 61
++P ND+ PA G +VL+VDD+ LK+L +++ K Y+ TT A + +E
Sbjct: 971 TNPTNDSAPPASGTHGNKVLIVDDNEINLKVLARLMSKLGYQHTTATNGLVAFTKYKESP 1030
Query: 62 DGYDIVISDVNMPDMDGFKLLEHVGL---EMDLPVI-MMSVDGETSRVMK--GVQHGACD 115
+ + +V+ D++MP MDG ++ E L + + +V G S M+ + G +
Sbjct: 1031 NSFSMVLMDISMPVMDGIDATRNIRSYEWEKQLSSVKVFAVTGIGSAAMQHEALMAGVDE 1090
Query: 116 YLLKPIRMKEL 126
YL+KP+ + +L
Sbjct: 1091 YLVKPLSLGQL 1101
>UNIPROTKB|P0AEC5 [details] [associations]
symbol:barA species:83333 "Escherichia coli K-12"
[GO:0009927 "histidine phosphotransfer kinase activity"
evidence=IDA] [GO:0046777 "protein autophosphorylation"
evidence=IDA] [GO:0006468 "protein phosphorylation" evidence=IDA]
[GO:0042542 "response to hydrogen peroxide" evidence=IMP]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0071310 "cellular response to organic substance"
evidence=IEP] [GO:0016868 "intramolecular transferase activity,
phosphotransferases" evidence=ISS] [GO:0005887 "integral to plasma
membrane" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA;IDA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA;IDA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0006351 GO:GO:0005622
GO:GO:0042542 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 GO:GO:0009927 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 EMBL:D10888 EMBL:U29580
PIR:S20550 RefSeq:NP_417266.1 RefSeq:YP_490994.1
ProteinModelPortal:P0AEC5 SMR:P0AEC5 DIP:DIP-47932N IntAct:P0AEC5
MINT:MINT-1307958 EnsemblBacteria:EBESCT00000000619
EnsemblBacteria:EBESCT00000017432 GeneID:12933292 GeneID:947255
KEGG:ecj:Y75_p2723 KEGG:eco:b2786 PATRIC:32120988 EchoBASE:EB1341
EcoGene:EG11367 HOGENOM:HOG000272329 KO:K07678 OMA:ANQVISQ
ProtClustDB:PRK11107 BioCyc:EcoCyc:BARA-MONOMER
BioCyc:ECOL316407:JW2757-MONOMER Genevestigator:P0AEC5
GO:GO:0071310 InterPro:IPR019247 Pfam:PF09984 Uniprot:P0AEC5
Length = 918
Score = 143 (55.4 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 34/115 (29%), Positives = 59/115 (51%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ V+ VDD+ A LK++ +L+ V C A+ R ++ +D+++ D+ MPDMD
Sbjct: 668 MTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE--RAKQMPFDLILMDIQMPDMD 725
Query: 78 GFK---LLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
G + L+ + + PVI ++ + K + G DYL KPI + L N+
Sbjct: 726 GIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNL 780
>UNIPROTKB|Q3AAN7 [details] [associations]
symbol:spo0A "Stage 0 sporulation protein A" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR001789 InterPro:IPR012052
InterPro:IPR014879 InterPro:IPR016032 Pfam:PF00072 Pfam:PF08769
PIRSF:PIRSF002937 ProDom:PD010908 PROSITE:PS50110 SMART:SM00448
GO:GO:0005737 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005509 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 SUPFAM:SSF46894
GO:GO:0030436 GO:GO:0042173 GO:GO:0050906 HOGENOM:HOG000057639
KO:K07699 OMA:RGKPTNS TIGRFAMs:TIGR02875 RefSeq:YP_360797.1
ProteinModelPortal:Q3AAN7 SMR:Q3AAN7 STRING:Q3AAN7 GeneID:3726731
KEGG:chy:CHY_1978 PATRIC:21277043
BioCyc:CHYD246194:GJCN-1977-MONOMER Uniprot:Q3AAN7
Length = 263
Score = 134 (52.2 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 33/107 (30%), Positives = 63/107 (58%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLAR---DALSLLRERKDGYDIVISDVNMP 74
+R++++DD+ + ++L++ + + + G+A D L ++ ++K DIV+ D+ MP
Sbjct: 4 IRIVIIDDNREFCELLKEFINQ-QEDFFLAGIAHNGVDGLEVIAQQKP--DIVVLDIIMP 60
Query: 75 DMDGFKLLEHVGLEMDLP-VIMMSVDGETSRVMKGVQHGACDYLLKP 120
+DG +LE + D P VI+++ G+ S K V+ GA Y+LKP
Sbjct: 61 HLDGIGVLEKLTEFEDRPKVILLTAFGQESITQKAVELGADYYILKP 107
>TIGR_CMR|CHY_1978 [details] [associations]
symbol:CHY_1978 "stage 0 sporulation protein A"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 InterPro:IPR012052 InterPro:IPR014879
InterPro:IPR016032 Pfam:PF00072 Pfam:PF08769 PIRSF:PIRSF002937
ProDom:PD010908 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0035556 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005509 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 SUPFAM:SSF46894 GO:GO:0030436 GO:GO:0042173
GO:GO:0050906 HOGENOM:HOG000057639 KO:K07699 OMA:RGKPTNS
TIGRFAMs:TIGR02875 RefSeq:YP_360797.1 ProteinModelPortal:Q3AAN7
SMR:Q3AAN7 STRING:Q3AAN7 GeneID:3726731 KEGG:chy:CHY_1978
PATRIC:21277043 BioCyc:CHYD246194:GJCN-1977-MONOMER Uniprot:Q3AAN7
Length = 263
Score = 134 (52.2 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 33/107 (30%), Positives = 63/107 (58%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLAR---DALSLLRERKDGYDIVISDVNMP 74
+R++++DD+ + ++L++ + + + G+A D L ++ ++K DIV+ D+ MP
Sbjct: 4 IRIVIIDDNREFCELLKEFINQ-QEDFFLAGIAHNGVDGLEVIAQQKP--DIVVLDIIMP 60
Query: 75 DMDGFKLLEHVGLEMDLP-VIMMSVDGETSRVMKGVQHGACDYLLKP 120
+DG +LE + D P VI+++ G+ S K V+ GA Y+LKP
Sbjct: 61 HLDGIGVLEKLTEFEDRPKVILLTAFGQESITQKAVELGADYYILKP 107
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 140 (54.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 37/127 (29%), Positives = 63/127 (49%)
Query: 6 SSPRNDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYD 65
+S N +LVV+D +++ +L K Y+VT A+ LL E+ +D
Sbjct: 442 TSSSQQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELL-EKNHVFD 500
Query: 66 IVISDVNMPDMDGF---KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR 122
+V+ D++MP MDG K+L +E +P+I ++ S + G D +LKPIR
Sbjct: 501 LVLMDISMPIMDGIAATKILRDKHIE--IPIIALTAHTAGSDKQNCIDAGMNDIVLKPIR 558
Query: 123 MKELRNI 129
K++ +
Sbjct: 559 SKDIMEV 565
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 140 (54.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 37/127 (29%), Positives = 63/127 (49%)
Query: 6 SSPRNDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYD 65
+S N +LVV+D +++ +L K Y+VT A+ LL E+ +D
Sbjct: 442 TSSSQQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELL-EKNHVFD 500
Query: 66 IVISDVNMPDMDGF---KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR 122
+V+ D++MP MDG K+L +E +P+I ++ S + G D +LKPIR
Sbjct: 501 LVLMDISMPIMDGIAATKILRDKHIE--IPIIALTAHTAGSDKQNCIDAGMNDIVLKPIR 558
Query: 123 MKELRNI 129
K++ +
Sbjct: 559 SKDIMEV 565
>TIGR_CMR|BA_5106 [details] [associations]
symbol:BA_5106 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847292.1 RefSeq:YP_030989.1 RefSeq:YP_052651.1
ProteinModelPortal:Q81K99 DNASU:1084409
EnsemblBacteria:EBBACT00000012632 EnsemblBacteria:EBBACT00000014721
EnsemblBacteria:EBBACT00000022679 GeneID:1084409 GeneID:2821239
GeneID:2851460 KEGG:ban:BA_5106 KEGG:bar:GBAA_5106 KEGG:bat:BAS4745
OMA:VVINPER ProtClustDB:CLSK873134
BioCyc:BANT260799:GJAJ-4799-MONOMER
BioCyc:BANT261594:GJ7F-4958-MONOMER Uniprot:Q81K99
Length = 232
Score = 132 (51.5 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 29/109 (26%), Positives = 55/109 (50%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ +L+ DD+ ++E L+K Y V +A+ ++ + D+V+ D+ MP MD
Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP--IDLVVLDIMMPKMD 61
Query: 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G+++ + + +P+I +S + G+ GA DY+ KP EL
Sbjct: 62 GYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIEL 110
>TIGR_CMR|SPO_3037 [details] [associations]
symbol:SPO_3037 "DNA-binding response regulator, LysR
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 InterPro:IPR001789
Pfam:PF00072 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50110
PROSITE:PS50931 SMART:SM00448 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:YP_168241.1
ProteinModelPortal:Q5LP15 DNASU:3195987 GeneID:3195987
KEGG:sil:SPO3037 PATRIC:23379513 Uniprot:Q5LP15
Length = 269
Score = 134 (52.2 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 42/133 (31%), Positives = 68/133 (51%)
Query: 6 SSPRNDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYD 65
+ P +D P+ +LVVDD + L +LK +Y + + ALS L D
Sbjct: 104 TQPGDDEELPS---LLVVDDTPQNIHHLHGLLKD-AYRIIPQTSGKGALSFLSGELA--D 157
Query: 66 IVISDVNMPDMDGFKLLEHVGLEM---DLPVIMM-SVDGETSRVMKGVQHGACDYLLKPI 121
+++ D+ MPDMDG+++ + D+PVI + S+D KG++ GACD++ +PI
Sbjct: 158 LILLDIRMPDMDGYEVCRQIKSTASLADIPVIFLTSLDDPMDET-KGLEMGACDFITRPI 216
Query: 122 RMKELR-NIWQHV 133
LR I H+
Sbjct: 217 VPAILRARIRSHI 229
>UNIPROTKB|Q9KRC3 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 132 (51.5 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 36/110 (32%), Positives = 57/110 (51%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
VLVV+DDL L + Y+VT L E D D+V+ D+N+P DG
Sbjct: 5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREAL-ELND-IDLVLLDINLPGEDGL 62
Query: 80 KLLEHVGLEMDLPVIMMSVDGETSRVMK--GVQHGACDYLLKPIRMKELR 127
L + + ++ +I+ V G T + K G++ GA DY+ KP+ ++EL+
Sbjct: 63 LLTRELRSQSEIGIIL--VTGRTDSIDKIVGLEMGADDYVTKPVDLRELQ 110
>TIGR_CMR|SPO_0710 [details] [associations]
symbol:SPO_0710 "DNA-binding response regulator ChvI"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
RefSeq:YP_165964.1 ProteinModelPortal:Q5LVJ1 GeneID:3195446
KEGG:sil:SPO0710 PATRIC:23374691 KO:K14981 OMA:ETKVMER
ProtClustDB:CLSK864190 Uniprot:Q5LVJ1
Length = 234
Score = 132 (51.5 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/109 (32%), Positives = 57/109 (52%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++ +VDDD L + L+ +EV T + AL ++ D+ + D+ MP MDG
Sbjct: 3 KIALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLP--DMAVLDIKMPRMDG 60
Query: 79 FKLLEHVGLEMDLPVIMM-SVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
LL+ + + +PVI + S D E V+ G++ GA DY+ KP + L
Sbjct: 61 MDLLQRLRQKTQMPVIFLTSKDDEIDEVL-GLRMGADDYVKKPFSQRLL 108
>TIGR_CMR|VC_1719 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 132 (51.5 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 36/110 (32%), Positives = 57/110 (51%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
VLVV+DDL L + Y+VT L E D D+V+ D+N+P DG
Sbjct: 5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREAL-ELND-IDLVLLDINLPGEDGL 62
Query: 80 KLLEHVGLEMDLPVIMMSVDGETSRVMK--GVQHGACDYLLKPIRMKELR 127
L + + ++ +I+ V G T + K G++ GA DY+ KP+ ++EL+
Sbjct: 63 LLTRELRSQSEIGIIL--VTGRTDSIDKIVGLEMGADDYVTKPVDLRELQ 110
>TIGR_CMR|BA_0994 [details] [associations]
symbol:BA_0994 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008152 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF81606 HSSP:Q9A5I4
OMA:ERKWGDL RefSeq:NP_843495.1 RefSeq:YP_017622.1
RefSeq:YP_027204.1 ProteinModelPortal:Q81U90 DNASU:1088940
EnsemblBacteria:EBBACT00000010036 EnsemblBacteria:EBBACT00000013718
EnsemblBacteria:EBBACT00000020226 GeneID:1088940 GeneID:2814732
GeneID:2850195 KEGG:ban:BA_0994 KEGG:bar:GBAA_0994 KEGG:bat:BAS0930
HOGENOM:HOG000084736 ProtClustDB:CLSK916048
BioCyc:BANT260799:GJAJ-1008-MONOMER
BioCyc:BANT261594:GJ7F-1053-MONOMER Uniprot:Q81U90
Length = 380
Score = 137 (53.3 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 30/118 (25%), Positives = 66/118 (55%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDG-----YDIVISDV 71
+ +L+VDD+ + +++K+LK+ Y+ + + A++ + KD D+++ D+
Sbjct: 1 MSILIVDDNPVNIFVIKKILKQAGYQDLVSLNSAQELFEYIHFGKDSSRHNEIDLILLDI 60
Query: 72 NMPDMDGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
MP++DG ++ + E D+P+I ++ + +++ + + GA DY+ KPI EL
Sbjct: 61 MMPEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITKPINKVEL 118
>TAIR|locus:2041145 [details] [associations]
symbol:AT2G02060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000239342 EMBL:BT008556 EMBL:BT008699
EMBL:AK229511 IPI:IPI00542007 RefSeq:NP_565281.2 UniGene:At.41520
ProteinModelPortal:Q7X887 SMR:Q7X887 EnsemblPlants:AT2G02060.1
GeneID:814737 KEGG:ath:AT2G02060 TAIR:At2g02060 eggNOG:NOG268656
InParanoid:Q7X887 OMA:WREQEHE ProtClustDB:CLSN2681500
Genevestigator:Q7X887 Uniprot:Q7X887
Length = 256
Score = 133 (51.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 38/107 (35%), Positives = 62/107 (57%)
Query: 202 RVVWSIDLHQKFVKAVNQIGFD-KVGPKKILDLMNVPWLTRENVASHLQKYR--LYLTRL 258
R+ W+ DLH+ FV AV +G + PK +L +M+V LT +V SHLQ YR LT L
Sbjct: 31 RLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRGGSKLT-L 89
Query: 259 QKDELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRF 305
+K E ++S I+++ +DS + + +++++H ND G + F
Sbjct: 90 EKPE-ESSSSSIRRR----QDSEEDYYLHDNLSLHTRNDCLLGFHSF 131
>TIGR_CMR|APH_0551 [details] [associations]
symbol:APH_0551 "response regulator/GGDEF domain protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_505143.1 ProteinModelPortal:Q2GKF8
STRING:Q2GKF8 GeneID:3930248 KEGG:aph:APH_0551 PATRIC:20949762
OMA:VERENDF BioCyc:APHA212042:GHPM-575-MONOMER Uniprot:Q2GKF8
Length = 456
Score = 138 (53.6 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 33/107 (30%), Positives = 62/107 (57%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD + +K+L+ L Y V T +A+ + E + D+++ DV MP MDG
Sbjct: 4 KILIVDDLPSNIKLLQAKLTAEYYTVITATSGPEAIRMAEEHQP--DLILLDVMMPGMDG 61
Query: 79 FKLLEHVGLEMDL---PVIMMS-VDGETSRVMKGVQHGACDYLLKPI 121
++ +++ + P++M++ +D TS + G+ GA D+L+KPI
Sbjct: 62 YETCKNMRTNPAIAYIPIVMVTALDNTTSNRVNGLSAGADDFLIKPI 108
WARNING: HSPs involving 186 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 584 584 0.00082 120 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 436
No. of states in DFA: 619 (66 KB)
Total size of DFA: 349 KB (2174 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.45u 0.20s 52.65t Elapsed: 00:00:02
Total cpu time: 52.47u 0.20s 52.67t Elapsed: 00:00:02
Start: Sat May 11 07:48:48 2013 End: Sat May 11 07:48:50 2013
WARNINGS ISSUED: 2