BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007940
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 80.1 bits (196), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/63 (57%), Positives = 50/63 (79%)
Query: 196 SSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYL 255
++ KK RV+W+ +LH KF+ AV+ +G ++ PKKILDLMNV LTRENVASHLQK+R+ L
Sbjct: 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60
Query: 256 TRL 258
++
Sbjct: 61 KKV 63
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++V+ + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD+ +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 59
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M + + + ++ Q GA Y++KP L +
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 134 FRK 136
F K
Sbjct: 120 FEK 122
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD+ +I +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 59
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 134 FRK 136
F K
Sbjct: 120 FEK 122
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD+ +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + V+ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++++ + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 7 LKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 64
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
Query: 134 FRK 136
F K
Sbjct: 125 FEK 127
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD+ +I+ +LK+ + V DAL+ L+ GY VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWRMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M+ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA +++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD 75
A V ++DDD K +++ L+ + V++ A +AL+ L D IVISD+ MP
Sbjct: 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS--ADFAGIVISDIRMPG 59
Query: 76 MDGFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
MDG L + L+ DLP+I+++ G+ ++ +Q GA D++ KP L
Sbjct: 60 MDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD 75
A V ++DDD K +++ L+ + V++ A +AL+ L D IVISD+ MP
Sbjct: 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS--ADFAGIVISDIRMPG 59
Query: 76 MDGFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
MDG L + L+ DLP+I+++ G+ ++ +Q GA D++ KP L
Sbjct: 60 MDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + + Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 62
Query: 77 DGFKLLEHVGLEM---DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD+ +I+ +LK+ + V DAL+ L+ GY VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWMMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWRMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD +MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWDMPNM 66
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + ++ Q GA Y++KP L +
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 134 FRK 136
F K
Sbjct: 127 FEK 129
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LVVDDD + ++L +L+ ++ G AL+ +RE + D+V+ D+ +P M+G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
+ + + +P++M++ +T V+ G++ GA DY++KP + KE
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 5 LKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD +MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWDMPNM 66
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + ++ Q GA Y++KP L +
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 134 FRK 136
F K
Sbjct: 127 FEK 129
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VIS NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISXWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VIS NMP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISXWNMPNM 63
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD MP+M
Sbjct: 5 LKFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWKMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD +MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWDMPNM 66
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + ++ Q GA Y++KP L +
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 134 FRK 136
F K
Sbjct: 127 FEK 129
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VIS NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISAWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVV D +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 7 LKFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 64
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
Query: 134 FRK 136
F K
Sbjct: 125 FEK 127
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 4 LKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 61
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 62 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 121
Query: 134 FRK 136
F K
Sbjct: 122 FEK 124
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD+ +I+ +LK+ + V DAL+ L+ GY VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWMMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M+ + + ++ Q GA +++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VISD +MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWDMPNM 66
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + ++ Q GA Y++KP L +
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 134 FRK 136
F K
Sbjct: 127 FEK 129
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ G+ +ISD NMP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGFGFIISDWNMPNM 63
Query: 77 DGFKLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + + LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 64 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 134 FRK 136
F K
Sbjct: 124 FEK 126
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ G+ +ISD NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGFGFIISDWNMPNM 62
Query: 77 DGFKLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + + LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVVDD+ ILE L+K YEV +A+ ++ E + D+++ D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 79 FKLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKEL 126
++ V + D+P+IM++ D E +V+ G++ GA DY+ KP +EL
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVI-GLEIGADDYVTKPFSTREL 109
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVVDD+ ILE L+K YEV +A+ ++ E + D+++ D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 79 FKLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKEL 126
++ V + D+P+IM++ D E +V+ G++ GA DY+ KP +EL
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVI-GLEIGADDYVTKPFSTREL 109
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VIS NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISXWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M+ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+VDDD + LE +L+ YEV +AL + K+ D +I DV +P +DG+
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIY--KNLPDALICDVLLPGIDGY 64
Query: 80 KLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L + V L LP++ ++ G+ S + G + GA DYL KP +EL
Sbjct: 65 TLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQEL 114
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ G+ +I D NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGFGFIICDWNMPNM 62
Query: 77 DGFKLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + + LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 7/107 (6%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LVVDD A +++LE L YEV+T AL++ +D DI++ DV MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 61
Query: 79 FKLLEHVG---LEMDLPVIMM-SVDGETSRVMKGVQHGACDYLLKPI 121
F + + +PV+++ ++DG R+ +G++ GA D+L KPI
Sbjct: 62 FTVCRKLKDDPTTRHIPVVLITALDGRGDRI-QGLESGASDFLTKPI 107
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDG-YDIVISDVNMPDM 76
+++L+VDD +I++ +L+ + T A D L+ L K G +D V++D NMP M
Sbjct: 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQ--EADDGLTALPMLKKGDFDFVVTDWNMPGM 70
Query: 77 DGFKLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
G LL+++ + + LPV+M++ + + ++++ Q G Y++KP L+ +
Sbjct: 71 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 130
Query: 134 FRK 136
F +
Sbjct: 131 FER 133
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 7/107 (6%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LVVDD A +++LE L YEV+T AL++ +D DI++ DV MP MDG
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 60
Query: 79 FKLLEHVG---LEMDLPVIMM-SVDGETSRVMKGVQHGACDYLLKPI 121
F + + +PV+++ ++DG R+ +G++ GA D+L KPI
Sbjct: 61 FTVCRKLKDDPTTRHIPVVLITALDGRGDRI-QGLESGASDFLTKPI 106
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVDD +I+ +LK+ + V DAL+ L+ GY VIS NMP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISXWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M+ + + ++ Q GA +++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ +LVVDD ++L L Y+ T DAL++L K+ DIV+SDVNMP+MD
Sbjct: 130 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLSDVNMPNMD 187
Query: 78 GFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
G++L + + L + LPVI ++ + + ++ G L KP+ + ++ ++ +
Sbjct: 188 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLT-LYAE 246
Query: 137 KIHEVRD 143
++ + RD
Sbjct: 247 RVRKSRD 253
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD+ I++ + K YEV T R+AL + DI+I D+ +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILDLMLPEIDG 60
Query: 79 FKLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
++ + + +P++M+S D E +V+ G++ GA DY+ KP +EL+ + + R+
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVI-GLELGADDYVTKPFSNRELQARVKALLRR 118
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVV + + +LK+ + V DAL+ L+ GY VISD NMP+M
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQ--AGGYGFVISDWNMPNM 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+M++ + + ++ Q GA Y++KP L +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ +LVVDD ++L L Y+ T DAL++L K+ DIV+SDVNMP+MD
Sbjct: 9 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLSDVNMPNMD 66
Query: 78 GFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
G++L + + L + LPVI ++ + + ++ G L KP+ + ++ ++ +
Sbjct: 67 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLT-LYAE 125
Query: 137 KIHEVRD 143
++ + RD
Sbjct: 126 RVRKSRD 132
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V VVDDD + +LE+ L TT + L+ L + D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 80 KLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
LL+ + LPVI+M+ + + Q GA DYL KP + E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V VVDDD + +LE+ L TT + L+ L + D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 80 KLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
LL+ + LPVI+M+ + + Q GA DYL KP + E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+RVLVV+D+ ++ + LKK + V C + + + + +D+VI D+ +P D
Sbjct: 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYM--ALNEPFDVVILDIMLPVHD 60
Query: 78 GFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
G+++L+ + ++ PV+M++ + +KG+ GA DYL KP ++EL + + R+
Sbjct: 61 GWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120
Query: 137 K 137
K
Sbjct: 121 K 121
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY--DIVISDVNMP 74
G ++L+V+D+ + +L+ DAL LL G+ D++I D+ MP
Sbjct: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL----GGFTPDLMICDIAMP 62
Query: 75 DMDGFKLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
M+G KLLEH+ D PV+++S + + K ++ G D LLKP+ K+L + + V
Sbjct: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV--KDLNRLREMV 120
Query: 134 F 134
F
Sbjct: 121 F 121
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V VVDDD + +LE+ L TT + L+ L + D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 80 KLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
LL+ + LPVI+M+ + + Q GA DYL KP + E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGL-ARDALSLLRERKDGYDIVISDVNMPD 75
G RVL+VDD +L+ ++ K YEV R+A+ +E K DIV D+ MP+
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP--DIVTMDITMPE 58
Query: 76 MDGFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR 122
M+G ++ + ++ + +I+ S G+ + V++ ++ GA D+++KP +
Sbjct: 59 MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 106
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGL-ARDALSLLRERKDGYDIVISDVNMPD 75
G RVL+VDD +L+ ++ K YEV R+A+ +E K DIV D+ MP+
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP--DIVTMDITMPE 59
Query: 76 MDGFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR 122
M+G ++ + ++ + +I+ S G+ + V++ ++ GA D+++KP +
Sbjct: 60 MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 107
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD+ I++ + K YEV T R+AL + DI+I + +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILXLMLPEIDG 60
Query: 79 FKLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
++ + + +P++M+S D E +V+ G++ GA DY+ KP +EL+ + + R+
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVI-GLELGADDYVTKPFSNRELQARVKALLRR 118
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LV+DD+ L+ ++ +L+ EV T + + L + E + D+VI+D+ MP + G
Sbjct: 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSG 64
Query: 79 FKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR-NIWQHVFRK 136
+L + + + VI+++ G+ + ++ GA +YL KP+ ++L I + RK
Sbjct: 65 MDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124
Query: 137 KI 138
K+
Sbjct: 125 KL 126
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++LVVDD+ + + +L+ L++ Y+V T +AL K D+++ DV +P +DG
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKP--DLIVLDVMLPKLDG 62
Query: 79 FKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
++ + + + + P++M++ E + G++ GA DY+ KP +E+ + + R+
Sbjct: 63 IEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122
Query: 138 IHEVR 142
E+R
Sbjct: 123 --EIR 125
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V VVDDD + +LE+ L TT + L+ L + D+++S + MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSXIRMPGMDGL 63
Query: 80 KLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
LL+ + LPVI+M+ + + Q GA DYL KP + E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RVLVVDD+ +++L LK +EV T AL RE + D VI DV P DG
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILDVXXPGXDG 82
Query: 79 FKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
F +L + + +D P + ++ + G+ G DY+ KP ++E+ + + R+
Sbjct: 83 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
L+ LVVD +I+ +LK+ + V DAL+ L+ GY VISD N P+
Sbjct: 5 LKFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNXPNX 62
Query: 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG +LL+ + G LPV+ ++ + + ++ Q GA +++KP L +
Sbjct: 63 DGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 134 FRK 136
F K
Sbjct: 123 FEK 125
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+R+LV DD A +L+++L+K ++V A L + E + YD VI D++MP M+
Sbjct: 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMN 72
Query: 78 GFKLLEHV------GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G +L+ + G+ PV+++S D + Q GA +L KP+ +L
Sbjct: 73 GLDMLKQLRVMQASGMRYT-PVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKL 126
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 6/129 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLK-KCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPD 75
++V + DD+ + +L++ + + EV T +D L +L E++ DI++ D+ MP
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRP--DILLLDIIMPH 60
Query: 76 MDGFKLLEHV--GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
+DG +LE + G E VIM++ G+ K V+ GA ++LKP M+ L + + V
Sbjct: 61 LDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQV 120
Query: 134 FRKKIHEVR 142
+ K VR
Sbjct: 121 YGKTTPVVR 129
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V VVDDD++ + L +L+ +EV T A L R + + ++ D+ MP M G
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLE--HRRPEQHGCLVLDMRMPGMSGI 64
Query: 80 KLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
+L E + D +P++ ++ G+ ++ ++ GA ++L KP + L + + +
Sbjct: 65 ELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA 124
Query: 139 HEVRDIENIEGFESIHMTRSGSDQSV 164
+ E + E + + +G +Q V
Sbjct: 125 ERRQARETQDQLEQLFSSLTGREQQV 150
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 15 PAG-LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVN 72
P G +++LVVDD +I++ L + YE V +A L D ++I+D N
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWN 60
Query: 73 MPDMDGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
MP+M+G L++ V + ++P+IM++ +G + V+ ++ G +Y++KP + L+
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
++VL+VDD + +L L++ + ++T G + ++ + + + +VISD NMP M
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ--NPHHLVISDFNMPKM 64
Query: 77 DGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG LL+ V I+++ G+ + V K GA + L KP +++++ + V
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAV 124
Query: 134 F 134
F
Sbjct: 125 F 125
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 33 LEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV-GLEMDL 91
LE+ L+ +EV T +AL E + D ++ D+NMP +DG ++ + ++ D+
Sbjct: 23 LERGLRLSGFEVATAVDGAEALRSATENRP--DAIVLDINMPVLDGVSVVTALRAMDNDV 80
Query: 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
PV ++S + G++ GA DYL+KP + EL + + R++
Sbjct: 81 PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 15 PAG-LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVN 72
P G +++LVVDD +I++ L + YE V +A L D ++I+D N
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWN 60
Query: 73 MPDMDGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
MP+M+G L++ V + ++P+IM++ +G + V+ ++ G +Y++KP + L+
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 6/112 (5%)
Query: 14 NPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNM 73
N AG +L+V+D + L+ +L++ Y+ R+A+ L + D++ISDV M
Sbjct: 5 NRAG-EILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP--DLIISDVLM 61
Query: 74 PDMDGFKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIR 122
P+MDG+ L + + DL PVI++++ + V++ ++ GA D++ KP +
Sbjct: 62 PEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCK 113
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LV++DD +L L Y V A + L ++ R+D D+++ D+ +PD DG
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGL--IKAREDHPDLILLDLGLPDFDG 96
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
+++ + LP+I+++ ++ + GA DYL+KP EL + R++
Sbjct: 97 GDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156
Query: 139 HE 140
E
Sbjct: 157 SE 158
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RVL+V+D + + ++ +K Y++ RDA+ + K ++I D+ +PDM G
Sbjct: 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKP--QLIILDLKLPDMSG 63
Query: 79 FKLLEHVGLEMDLP--VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR-NIWQHVFR 135
+L+ + + D+P VI+ + G + +Q GA D+L KPI L+ ++ H+ R
Sbjct: 64 EDVLDWIN-QNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122
Query: 136 KKIHEV 141
K+ ++
Sbjct: 123 AKLEDL 128
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLK-KCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPD 75
++V + DD+ + +L++ + + EV T +D L +L E++ DI++ + MP
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRP--DILLLXIIMPH 60
Query: 76 MDGFKLLEHV--GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
+DG +LE + G E VIM++ G+ K V+ GA ++LKP M+ L + + V
Sbjct: 61 LDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQV 120
Query: 134 FRKKIHEVR 142
+ K VR
Sbjct: 121 YGKTTPVVR 129
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD +L ++ K Y+ AL ++ + + D+V+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 79 FKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
++L+ + ++ ++ VI+M+ GE + + + GA + KP + E+R+
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD +L ++ K Y+ AL ++ + + D+V+ D+ +P MDG
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 64
Query: 79 FKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
++L+ + ++ ++ VI+M+ GE + + + GA + KP + E+R+
Sbjct: 65 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V +VDD+ K L ML + V A L+ + ++G ++++D+ MPDM G
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG--VLVTDLRMPDMSGV 63
Query: 80 KLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120
+LL ++G L++++P I+++ G+ ++ ++ GA D++ KP
Sbjct: 64 ELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
VL+V+D+ + L +L+K +E T AL+ + G DIV+ D+ +P M G
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD--RAGADIVLLDLMLPGMSGT 64
Query: 80 KLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
+ + + +PVIM++ D E +V+ G++ GA DY+ KP +EL + V R+
Sbjct: 65 DVCKQLRARSSVPVIMVTARDSEIDKVV-GLELGADDYVTKPYSARELIARIRAVLRR 121
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 15 PAG-LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVN 72
P G +++LVVDD +I++ L + YE V +A L D ++I+ N
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITAWN 60
Query: 73 MPDMDGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
MP+M+G L++ V + ++P+IM++ +G + V+ ++ G +Y++KP + L+
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY-DIVISDVNMPDMD 77
R+LVV+D+ +++ +L++ ++ A D S + + + + D+++ D +P
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVE---AEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 78 GFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
G + ++H+ E D+PV+M++ GE ++G++ GA DY+ KP KEL + V
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 135 RK 136
R+
Sbjct: 121 RR 122
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY-DIVISDVNMPDMD 77
R+LVV+D+ +++ +L++ ++ A D S + + + + D+++ D +P
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVE---AEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 78 GFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
G + ++H+ E D+PV+M++ GE ++G++ GA DY+ KP KEL + V
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 135 RK 136
R+
Sbjct: 121 RR 122
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD +L ++ K Y+ AL ++ + + D+V+ D+ +P MDG
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 60
Query: 79 FKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
++L+ + ++ ++ VI+M+ GE + + + GA + KP + E+R+
Sbjct: 61 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD +L ++ K Y+ AL ++ + + D+V+ D+ +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 79 FKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
++L+ + ++ ++ VI+M+ GE + + + GA + KP + E+R+
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD +L ++ K Y+ AL ++ + + D+V+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 79 FKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
++L+ + ++ ++ VI+M+ GE + + GA + KP + E+R+
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD +L ++ K Y+ AL ++ + + D+V+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 79 FKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
++L+ + ++ ++ VI+M+ GE + + + GA KP + E+R+
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RVLVVDD+ + L +L++ Y T R+A ++E + +++ DV MPD DG
Sbjct: 3 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDG 60
Query: 79 FKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
++ + D VI+++ G +K ++ GA ++L KP ++ +H F +
Sbjct: 61 VNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEE 119
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+RVLVV+D+ ++ + LKK + V C + + +D+VI D+ +P D
Sbjct: 3 VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGX--YXALNEPFDVVILDIXLPVHD 60
Query: 78 GFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
G+++L+ ++ PV+ ++ + +KG+ GA DYL KP ++EL + + R+
Sbjct: 61 GWEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRR 120
Query: 137 K 137
K
Sbjct: 121 K 121
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L++DDD + L L+ +++V L + + D+VI D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 80 KLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
+L+ + + P+I++S G S ++ ++ GA DYL+KP+ E + +H R+ +
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKPL---EDLAVLEHSVRRAL 122
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L++DDD + L L+ +++V L + + D+VI D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 80 KLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138
+L+ + + P+I++S G S ++ ++ GA DYL+KP+ E + +H R+ +
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPL---EDLAVLEHSVRRAL 122
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD +L ++ K Y+ AL ++ + + D+V+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 79 FKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
++ + + ++ ++ VI+M+ GE + + + GA + KP + E+R+
Sbjct: 63 IEIAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
VL+V+D+ A + L L+ V + L RK D++I D+ +PD DG
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP--DLIILDLGLPDGDGI 61
Query: 80 KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
+ + + +PVI++S E S + + GA DYL KP + EL+
Sbjct: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQ 109
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 18/168 (10%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCS-YEVTTCG----LARDALSLLRERKDGYDIVISDVN 72
+RVL VDD +I+ +++ S E+ +ARD + +K D++ DV
Sbjct: 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLI-----KKFNPDVLTLDVE 58
Query: 73 MPDMDGFKLLEHVGLEMDLPVIMM-SVDGETSRV-MKGVQHGACDYLLKP-IRMKELRNI 129
MP MDG LE + +PV+M+ S+ G+ S V ++ ++ GA D++ KP + ++E
Sbjct: 59 MPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLA 118
Query: 130 WQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSV 177
+ + +K+ + H + GPLL+ E L ++
Sbjct: 119 YSEMIAEKVRTAARARI-----AAHKPMAAPTTLKAGPLLSSEKLIAI 161
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ VLV++DD + +LE+ L +V + ++A LL E+ +++V+ + +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLXLLLPDVN 58
Query: 78 GFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G ++L+ + + VI+++ G ++ ++ GA D+L KP ++E+
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V +VDD+ K L ML + V A L+ + ++G ++++ + MPDM G
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG--VLVTXLRMPDMSGV 63
Query: 80 KLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120
+LL ++G L++++P I+++ G+ ++ ++ GA D++ KP
Sbjct: 64 ELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 8 PRNDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKD-GYDI 66
PR +RVLVVDD A+++++ K + ++ G A+D L + + + D+
Sbjct: 16 PRGSHMTDRVIRVLVVDDS-AFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDV 74
Query: 67 VISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGE--TSRVMKGVQHGACDYLLKP 120
+ D+ MP+++G + L+ + + VIM+S E + ++ +++GA D++ KP
Sbjct: 75 ITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+VDD +L ++ K Y+ AL ++ + + D+V+ + +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLXMKIPGMDG 62
Query: 79 FKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
++L+ + ++ ++ VI+M+ GE + + + GA + KP + E+R+
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 5 FSSPRNDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDG 63
+ P D RVL+ +D+ L +ML++ YE+ G ++A+ L K
Sbjct: 1 MTGPTTDADAAVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKP- 59
Query: 64 YDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRM 123
D+VI DV MP DG + + P+++++ + V + GA YL+KP +
Sbjct: 60 -DLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSI 118
Query: 124 KEL 126
+L
Sbjct: 119 SDL 121
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RVLVVDD+ + L +L++ Y T R+A ++E + +++ DV PD DG
Sbjct: 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWXPDGDG 59
Query: 79 FKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
++ + D VI+++ G +K ++ GA ++L KP ++ +H F
Sbjct: 60 VNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAF 116
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 65 DIVISDVNMPDMDGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI 121
D+++ + +P G + ++H+ E D+PV+M++ GE ++G++ GA DY+ KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 122 RMKELRNIWQHVFRK 136
KEL + V R+
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VL+VDD KI+ LKK YEV + AL L E D+++ D+ MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLDIMMPVMDG 61
Query: 79 FKLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKP 120
F +L+ + + + +PVI+++ G + GA + KP
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 15/111 (13%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VL+V+D+ +K+ +L+ YE ALS+ RE K D+++ D+ +P++ G
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 60
Query: 79 FKLLEHVGLEMDL---PVIMMSVDGETSRVMKG----VQHGACD-YLLKPI 121
++ + + + DL PV+ + T+ MKG ++ G C+ Y+ KPI
Sbjct: 61 LEVTKWLKEDDDLAHIPVVAV-----TAFAMKGDEERIREGGCEAYISKPI 106
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 2 ENGFSSPRNDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLL--- 57
E S P +D F G RVLVVDD+ K+ LKK EV C ++AL L+
Sbjct: 47 EQETSKPSDDEF-LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEG 105
Query: 58 ---RERKDG-----YDIVISDVNMPDMDGFKLLEHV-----GLEMDLPVIMMSV-DGETS 103
RE + +D + D MP+MDG++ + + P+I +S D +
Sbjct: 106 LTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSE 165
Query: 104 RVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
+ +Q G +L K + +L N+ + + K+
Sbjct: 166 EARETIQAGMDAFLDKS--LNQLANVIREIESKR 197
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDI--VISDVNMPDMD 77
+L+V+D+L L+ + + Y+V + +L E YDI VI D+N+P +
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE----YDINLVIMDINLPGKN 61
Query: 78 GFKLLEHVGLEMDLPVIMMS-VDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G L + + ++ ++ ++ D E +++ G++ GA DY+ KP +EL
Sbjct: 62 GLLLARELREQANVALMFLTGRDNEVDKIL-GLEIGADDYITKPFNPREL 110
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LVVDDD + + L +L+ ++ G AL+ +RE + D+V+ D+ +P +G
Sbjct: 7 RILVVDDDASLAEXLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLXLPGXNG 64
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 125
+ + + +P++ ++ +T V+ G++ GA DY+ KP + KE
Sbjct: 65 IDVCRVLRADSGVPIVXLTAKTDTVDVVLGLESGADDYIXKPFKPKE 111
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGL----ARDALSLLRERKDGYDIVISDVNM 73
+++LVV+D+ +++++ML E A D + L + + Y+++ DV M
Sbjct: 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 61
Query: 74 PDMDGFKLLEHVGLEMDL----PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
P +DG LL + DL P++ ++ + S + + ++ G +L KPI+ +L+ I
Sbjct: 62 PKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 119
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY-DIVISDVNMPDMD 77
R+LVV+D+ +++ +L++ ++ A D S + + + + D+++ +P
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVE---AEDYDSAVNQLNEPWPDLILLAWMLPGGS 60
Query: 78 GFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
G + ++H+ E D+PV+M++ GE ++G++ GA D + KP KEL + V
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVM 120
Query: 135 RK 136
R+
Sbjct: 121 RR 122
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 12 TFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDV 71
+ N V++VDD+ L L++++K+ + T DAL L + +VISD+
Sbjct: 2 SLNYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEAL--KGTSVQLVISDM 59
Query: 72 NMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACD-YLLKP 120
MP+M G LE V D+ +++S + + V G +LLKP
Sbjct: 60 RMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKP 110
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VL+VDD KI+ LKK YEV + AL L E D+++ + MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLXIMMPVMDG 61
Query: 79 FKLLEHVGLEMD---LPVIMMSVDGETSRVMKGVQHGACDYLLKP 120
F +L+ + + + +PVI+++ G + GA + KP
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY-DIVISDVNMPDMD 77
R+LVV+D+ +++ +L++ ++ A D S + + + + D+++ +P
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVE---AEDYDSAVNQLNEPWPDLILLAWMLPGGS 60
Query: 78 GFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
G + ++H+ + D+PV+M++ GE ++G++ GA D + KP KEL + V
Sbjct: 61 GIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVM 120
Query: 135 RK 136
R+
Sbjct: 121 RR 122
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LVVDDD A +E++LK+ ++V DA L + I+ D++MP +DG
Sbjct: 8 RILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPA--IMTLDLSMPKLDG 65
Query: 79 FKLLEHVGLE--MDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120
++ + + P I++ + +++ + V GA DYL KP
Sbjct: 66 LDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKP 109
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDI--VISDVNMPDMD 77
+L+V+D+L L+ + + Y+V + +L E YDI VI D+N+P +
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILSE----YDINLVIXDINLPGKN 61
Query: 78 GFKLLEHVGLEMDLPVIMMS-VDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G L + + ++ + ++ D E +++ G++ GA DY+ KP +EL
Sbjct: 62 GLLLARELREQANVALXFLTGRDNEVDKIL-GLEIGADDYITKPFNPREL 110
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALS---LLRERKDGYDIVISDVNMPD 75
++ VVDDD + +LKK S ++ G + L+ L + ++ + +V+ DV +PD
Sbjct: 4 KIAVVDDD-------KNILKKVSEKLQQLGRVKTFLTGEDFLND-EEAFHVVVLDVXLPD 55
Query: 76 MDGFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120
G+++ + + VI++++ + V+KG + GA DY+ KP
Sbjct: 56 YSGYEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKP 101
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RVLVV+D+ L+ ++ ++V A++A L E DI I D+ +PD DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIP--DIAIVDLGLPDEDG 59
Query: 79 FKLLEH-VGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
L+ ++ LP+++++ ++ + GA DY+ KP ++E+ Q + R+
Sbjct: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVXARXQALXRR 118
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALS---LLRERKDGYDIVISDVNMPD 75
++ VVDDD + +LKK S ++ G + L+ L + ++ + +V+ DV +PD
Sbjct: 4 KIAVVDDD-------KNILKKVSEKLQQLGRVKTFLTGEDFLND-EEAFHVVVLDVXLPD 55
Query: 76 MDGFKLLEHVG-LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI 121
G+++ + + VI++++ + V+KG + GA DY+ KP
Sbjct: 56 YSGYEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPF 102
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 6 SSPRNDTFNPA-GLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDG 63
S PR ++ VL+VDD + +K L ++ + + T +A+ +
Sbjct: 24 SKPRGINYDTGIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPN 83
Query: 64 YDIVISDVNMPDMDGFKLLEHVGLEMD--LPVIMMSVDGETSRVMKGVQHGACDYLLKPI 121
DIV + MP MDG L ++ +E D VIM+S G+ V + GA +++KP+
Sbjct: 84 IDIVTLXITMPKMDGITCLSNI-MEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPL 142
Query: 122 -RMKELRNI 129
R K L+ +
Sbjct: 143 DRAKVLQRV 151
>pdb|3I42|A Chain A, Structure Of Response Regulator Receiver Domain
(Chey-Like) From Methylobacillus Flagellatus
Length = 127
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+ L+V+D A + +++L+ ++ DAL + R GYD V D+N+PD G
Sbjct: 5 QALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTSG 62
Query: 79 FKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACD----YLLKPIRMKELRNIWQHV 133
L++ + L M+ ++V G + AC+ YL KPI + L I Q +
Sbjct: 63 LALVKQLRALPMEKTSKFVAVSGFAK---NDLGKEACELFDFYLEKPIDIASLEPILQSI 119
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGL----ARDALSLLRERKDGYDIVISDVNM 73
+++LVV+D+ +++++ML E A D + L + + Y+++ DV M
Sbjct: 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 62
Query: 74 PDMDGFKLLEHVGLEMDL----PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129
P +DG LL + DL P++ ++ + S + + ++ G +L KPI+ +L+ I
Sbjct: 63 PKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 120
Query: 130 W 130
Sbjct: 121 L 121
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRE--RKDGYDIVISDVNMPDMD 77
+++V+D+ L+ + Y V+ + LRE + D+++ D+N+PD +
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASG----AGLREIXQNQSVDLILLDINLPDEN 60
Query: 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMK--GVQHGACDYLLKPIRMKEL 126
G L + + +I+ V G + R+ + G++ GA DY+ KP+ ++EL
Sbjct: 61 GLXLTRALRERSTVGIIL--VTGRSDRIDRIVGLEXGADDYVTKPLELREL 109
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
L VL+ +D+ + K L+KC+ ++T AL + R+ +D++I D+ MP MD
Sbjct: 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMD 68
Query: 78 GFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGA--CDYLLKPIRMKELRNI 129
G + + + E S+ T+ + + GA +Y+ KP+ +LR++
Sbjct: 69 GLEAVSEIRNYERTHNTKRASIIAITADTIDDDRPGAELDEYVSKPLNPNQLRDV 123
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
RV +VDDD +L+ +++ V R L+L ++D I+I D+ MPDMDG
Sbjct: 5 RVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQD---IIILDLMMPDMDG 61
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGA 113
+++ H+ E P ++ + G S GV H A
Sbjct: 62 IEVIRHLA-EHKSPASLILISGYDS----GVLHSA 91
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
Length = 132
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L+VDDD A L +++L+ YEV A + L+ + + +++ + + +PD +G
Sbjct: 5 RILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKI--ENEFFNLALFXIKLPDXEG 62
Query: 79 FKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137
+LLE L I ++ + + GA Y+ KP+ ++L +K
Sbjct: 63 TELLEKAHKLRPGXKKIXVTGYASLENSVFSLNAGADAYIXKPVNPRDL--------LEK 114
Query: 138 IHEVRDIENIEG 149
I E D + EG
Sbjct: 115 IKEKLDEQEKEG 126
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+L+VD L+ L+++L Y + A AL LL R+ D+VIS ++P MDG
Sbjct: 17 ILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGP 74
Query: 80 KLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC-DYLLKPIRMKEL 126
LL + + I+++ D + + K + G YL KP +EL
Sbjct: 75 TLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQEL 123
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARD---ALSLLRERKDGYDIVISDV 71
P +RV+V DD + + + + L S V G A D AL L++ D+ + D
Sbjct: 13 PEKVRVVVGDDHPLFREGVVRALS-LSGSVNVVGEADDGAAALELIKAHLP--DVALLDY 69
Query: 72 NMPDMDGFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119
MP MDG ++ V E+ V+++S E + V + +Q GA +LLK
Sbjct: 70 RMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLK 118
>pdb|3KCN|A Chain A, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
pdb|3KCN|B Chain B, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
Length = 151
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L+VDDD + L L++ L +EVTTC +AL+ ++ + D + ++ D P +G
Sbjct: 6 RILLVDDDYSLLNTLKRNL-SFDFEVTTCESGPEALACIK-KSDPFSVIXVDXRXPGXEG 63
Query: 79 FKLLEHVGL 87
++++ L
Sbjct: 64 TEVIQKARL 72
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L++D D + L+ L++ + +A+ + K YD++ ++ + D DG
Sbjct: 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDG 63
Query: 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
+ L + + P++ + E ++ + G DYL+KP+ ++ L + + R+
Sbjct: 64 WTLCKKIRNVTTCPIVYXTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ VLVVDD L+K +V AR+AL+ L E+ +V+ D P++D
Sbjct: 125 IEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATL-EQHPAIRLVLVDYYXPEID 183
Query: 78 GFKLLEHVG---LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134
G L+ + + L +I +SV + + ++ GA D+L +P +EL+ H
Sbjct: 184 GISLVRXLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSH-- 241
Query: 135 RKKIHEVRDIENIEGFES 152
++E +E F S
Sbjct: 242 --------NLEALEQFNS 251
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERK----DGYDIVISDVNMP 74
++L+V+D + L + + + GL DA L + D Y + + D+ +P
Sbjct: 6 KILIVEDSXTIRRXLIQAIAQ------QTGLEIDAFDTLEGARHCQGDEYVVALVDLTLP 59
Query: 75 DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR 122
D + ++ V LE LPV++++ D + ++ G DY+ K R
Sbjct: 60 DAPSGEAVK-VLLERGLPVVILTADISEDKREAWLEAGVLDYVXKDSR 106
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 12 TFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY---DIVI 68
+ L++L+V+DD + L ++ EV + G + ER G D++I
Sbjct: 2 SLREVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEG-----ERLFGLHAPDVII 56
Query: 69 SDVNMPDMDGFKLLEHVGLEMDLP-VIMMSVDGETSRVMKGVQHGACDYLLKPI---RMK 124
+D+ P + G + L+ + P VI++S E +K ++ G +L KPI R+
Sbjct: 57 TDIRXPKLGGLEXLDRIKAGGAKPYVIVISAFSEXKYFIKAIELGVHLFLPKPIEPGRLX 116
Query: 125 ELRNIWQHV 133
E ++H+
Sbjct: 117 ETLEDFRHI 125
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD---- 75
+++VDD+ L ++ +LK +V T ++LRE + ++V+ D+N
Sbjct: 6 IIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE--ENPEVVLLDMNFTSGINN 63
Query: 76 -MDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120
+G L + + DLPV++ + + ++G++ GA D+++KP
Sbjct: 64 GNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKP 110
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V VVD+ ++ L+K + V ++A + LR K D+V DV +
Sbjct: 7 VXVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDV-FEGEESL 63
Query: 80 KLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L+ + E D V ++S + ++ V+ GA DY+LKP R+ L
Sbjct: 64 NLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYL 111
>pdb|2QV0|A Chain A, Crystal Structure Of The Response Regulatory Domain Of
Protein Mrke From Klebsiella Pneumoniae
pdb|2QV0|B Chain B, Crystal Structure Of The Response Regulatory Domain Of
Protein Mrke From Klebsiella Pneumoniae
Length = 143
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLR-ERKDGYDIVISDVNMPDM 76
++V++V+D+ + L ++ S ++ G D L +L+ + + D + D+N+P +
Sbjct: 10 MKVIIVEDEFLAQQELSWLINTHS-QMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSL 68
Query: 77 DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133
DG L +++ P I+ + ++ + A DY+LKP + + N+ Q +
Sbjct: 69 DGVLLAQNISQFAHKPFIVF-ITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKL 124
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 36.6 bits (83), Expect = 0.036, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD--- 75
R+++VD L L L + +++ CG A +A+ + K ++I++ NMP
Sbjct: 10 RIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPV--AVKTHPHLIITEANMPKISG 67
Query: 76 MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI 121
MD F L+ +PVI +S + + G D++ KP+
Sbjct: 68 MDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
+LVVDD + + L++ Y T + L L D+V+ D+ DG+
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPP--DLVLLDIXXEPXDGW 63
Query: 80 KLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136
+ LE + + D+PV+ ++ T DY+LKP +L +HV +
Sbjct: 64 ETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123
Query: 137 K 137
+
Sbjct: 124 R 124
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 19 RVLVVDD---DLAWLK-ILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMP 74
RVLVV+D D+A ++ +L++ C E G A +L + ++ YD++I D+ +P
Sbjct: 7 RVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNG----AKALYQVQQAKYDLIILDIGLP 62
Query: 75 DMDGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGA 113
+GF++ V G P+++++ + R + GA
Sbjct: 63 IANGFEVXSAVRKPGANQHTPIVILTDNVSDDRAKQCXAAGA 104
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 24/103 (23%)
Query: 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM 76
G RVL+VDD T G R+A+ +E K DIV D+ MP+M
Sbjct: 2 GKRVLIVDD-------------------ATNG--REAVEKYKELKP--DIVTMDITMPEM 38
Query: 77 DGFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118
+G ++ + ++ + +I+ S G+ + V++ ++ GA D+++
Sbjct: 39 NGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIV 81
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLR-ERKDGYDIVISDVNMPD 75
LR+L+VDD+ L + + A D ++ ++ K +++++DV MP
Sbjct: 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPR 61
Query: 76 MDGFKLLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
MDG +L++++ L D VI MS + + ++ A Y+ KPI E+ +
Sbjct: 62 MDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMD 115
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77
+ VLV++DD + +LE+ L +V + ++A LL E+ +++V+ D+ +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVN 58
Query: 78 GFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
G ++L+ + + VI+++ G ++ ++ GA D+L KP ++E+
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 20 VLVVDDDLAWLKILEKMLKKC--SYEVTTCGLARDALS-LLRERKDGY------DIVISD 70
++ ++DDL +++EK +++ + E+ AL+ L + K G +V+ D
Sbjct: 7 IVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLD 66
Query: 71 VNMPDMDGFKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELR 127
+N+PD G +L+ V PV++++ + + + GA Y+ KP+ +
Sbjct: 67 LNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFA 126
Query: 128 N 128
N
Sbjct: 127 N 127
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF 79
V +VDDD ++ +L + + + + LL++ G +V+ D+ P DG+
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSG--VVLLDIXXPGXDGW 67
Query: 80 KLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
+ + LE + ++ ++ G+Q DY+ KP ++L
Sbjct: 68 DTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKPFDNEDL 117
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 31/143 (21%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
++L+V+D+ + + + M+K+ + + +A++ + YD+V+ DV MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINS--SSYDLVLMDVCMPVLDG 67
Query: 79 FKLLEHV---------------GLEMD--------------LPVIMMSVDGETSRVMKGV 109
K + G+++ LP+I M+ + +
Sbjct: 68 LKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECY 127
Query: 110 QHGACDYLLKPIRMKELRNIWQH 132
+G ++ KP+ +++LR Q
Sbjct: 128 ANGMDSFISKPVTLQKLRECLQQ 150
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 20 VLVVDDDLAWLKILEKMLK-KCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
VL+VDD + + + L + + C + A+++ + K +++ D+ MP +DG
Sbjct: 21 VLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKP--TVILQDLVMPGVDG 78
Query: 79 FKLLEHVG---LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119
LL D+P+I++S E + GA DYL+K
Sbjct: 79 LTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVK 122
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 50 ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV-GLEMDLPVIMMSVDGETSRVMKG 108
R+A+ +E K DIV D+ MP+M+G ++ + ++ + +I+ S G+ + V++
Sbjct: 14 GREAVEKYKELKP--DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEA 71
Query: 109 VQHGACDYLL 118
++ GA +++
Sbjct: 72 IKAGAKGFIV 81
>pdb|3GRC|A Chain A, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|B Chain B, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|C Chain C, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|D Chain D, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
Length = 140
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+L+ +DD ++L L+K ++ A AL + R Y D+N+PD DG
Sbjct: 8 RILICEDDPDIARLLNLXLEKGGFDSDXVHSAAQALEQVARRP--YAAXTVDLNLPDQDG 65
Query: 79 FKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACD-YLLKPI 121
L+ + + DL ++++S + + Q A +L KPI
Sbjct: 66 VSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPI 112
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 65 DIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGA 113
D+++ D+ MP MDG + L H L+ + M+S S + G H A
Sbjct: 62 DLILLDIEMPVMDGMEFLRHAKLKTRAKICMLS-----SVAVSGSPHAA 105
>pdb|2LPM|A Chain A, Chemical Shift And Structure Assignments For Sma0114
Length = 123
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 18 LRVLVVDDDLAWLKILEKMLKKCSYEV-TTCGLARDALSLLRERKDGYDIVISDVNM 73
LRVLVV+D+ ++E L + +EV T ++AL + RK +DI I DVN+
Sbjct: 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDI--ARKGQFDIAIIDVNL 63
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 14 NPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNM 73
N GL+VLV+D++ + + +L EVTT + L ++ + +V DV M
Sbjct: 4 NFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCM 60
Query: 74 PDMDGFKLL----EHVGLEMDLPVIMMSVDGETSRVM--KGVQHGACDYLLKPIRMKELR 127
P ++ +++ E + +++++ G T + K + G LLKP+ + +R
Sbjct: 61 PGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIR 120
Query: 128 NIWQHVFRKKI 138
++ + ++
Sbjct: 121 DVLSDLLEPRV 131
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 66 IVISDVNMPDMDGFKLLEHVG---LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119
+++ D+ MP +DG L+ L D+P+I++S + GA DYL+K
Sbjct: 64 VILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVK 120
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 10 NDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYE----VTTCGLARDALSLLRERKDGYD 65
+D NP + +L+V+D A ++++++LK + + + GLA A++ L+++ + +
Sbjct: 2 SDESNPPKV-ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLA--AMAFLQQQGEYEN 58
Query: 66 -----IVISDVNMPDMDGFKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQ-HGACDY 116
+++ D+N+P DG ++L + DL PV++++ V+ + H C Y
Sbjct: 59 SPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNC-Y 117
Query: 117 LLKPIRMKELRNIWQHV 133
L K +K+L + Q +
Sbjct: 118 LTKSRNLKDLFKMVQGI 134
>pdb|3NHM|A Chain A, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
pdb|3NHM|B Chain B, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
Length = 133
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
+VL+V++ + L ++L ++ TT A A L + D++ISDVN DG
Sbjct: 6 KVLIVENSWTXRETL-RLLLSGEFDCTTA--ADGASGLQQALAHPPDVLISDVNXDGXDG 62
Query: 79 FKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACD-YLLKPIR 122
+ L H E L PVI +S G R D YL+KP++
Sbjct: 63 YALCGHFRSEPTLKHIPVIFVS--GYAPRTEGPADQPVPDAYLVKPVK 108
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78
R+LVVDD+ ++L++ L++ YE+ T +AL + YD+VI D+ MP + G
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALK--KFFSGNYDLVILDIEMPGISG 60
Query: 79 FKL 81
++
Sbjct: 61 LEV 63
>pdb|3RQI|A Chain A, Crystal Structure Of A Response Regulator Protein From
Burkholderia Pseudomallei With A Phosphorylated Aspartic
Acid, Calcium Ion And Citrate
Length = 184
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 21 LVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFK 80
LV+DD+ + L + L++ Y V +AL L K ++ + +++ + G
Sbjct: 11 LVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLS 68
Query: 81 LLEHV-GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L+ + L+ D +++++ + ++ V+ GA +YL KP ++ +
Sbjct: 69 LIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESI 115
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 66 IVISDVNMPDMDGFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR 122
+++ D+N+P DG ++L+ + + +PV++M+ + + Y++KP+
Sbjct: 65 VILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE 124
Query: 123 MKELRNIWQ 131
+ L Q
Sbjct: 125 IDRLTETVQ 133
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 52 DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQ 110
DA+ L+ E ++VI D+ MP M G ++L + + +++ VI+++ K V
Sbjct: 40 DAMKLIEEYNP--NVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVV 97
Query: 111 HGACDYLLKPIRMKEL 126
+ Y+LK ++EL
Sbjct: 98 NDVDAYVLKERSIEEL 113
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 18 LRVLVVDDD----LAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNM 73
L VLV++D+ L + L+K++ E ++A+++L E DI I D+ M
Sbjct: 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAAD---GKEAVAIL-ESCGHVDIAICDLQM 59
Query: 74 PDMDGFKLLEHVGLEMDLPVIMMS 97
MDG L H L + +++S
Sbjct: 60 SGMDGLAFLRHASLSGKVHSVILS 83
>pdb|3HDV|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|D Chain D, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
Length = 136
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDA-LSLLRERKDGYDIVISDVNMPDMDG 78
VLVVDD+ + L LK + A +A L L +++ G + I+D+ G
Sbjct: 10 VLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIG--LXITDLRXQPESG 67
Query: 79 FKLLEHV--GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 126
L+ + L +I++S D + + G D+LLKP+ + +L
Sbjct: 68 LDLIRTIRASERAALSIIVVSGDTDVEEAVDVXHLGVVDFLLKPVDLGKL 117
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 66/129 (51%), Gaps = 15/129 (11%)
Query: 10 NDTFNPAGLRVLVVDDDLAWLKILEKMLKKCSYE----VTTCGLARDALSLLRERKDGYD 65
+D NP + +L+V+D A ++++++LK + + + GLA A + L+++ + +
Sbjct: 2 SDESNPPKV-ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLA--AXAFLQQQGEYEN 58
Query: 66 -----IVISDVNMPDMDGFKLLEHVGLEMDL---PVIMMSVDGETSRVMKGVQHGACDYL 117
+++ D+N+P DG ++L + DL PV++++ V+ + YL
Sbjct: 59 SPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYL 118
Query: 118 LKPIRMKEL 126
K +K+L
Sbjct: 119 TKSRNLKDL 127
>pdb|1K68|A Chain A, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
pdb|1K68|B Chain B, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
Length = 140
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 50/89 (56%), Gaps = 10/89 (11%)
Query: 19 RVLVVDDDLAWLKILEKMLKKCS--YEVTTCGLARDALSLLRERKDGY-----DIVISDV 71
++ +V+D+ A ++++++ L + +EV T +A++ LR+ + D+++ +
Sbjct: 4 KIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXL 63
Query: 72 NMPDMDGFKLLEHVGLEMDL---PVIMMS 97
N+P DG ++L + + L PV+++S
Sbjct: 64 NLPKKDGREVLAEIKSDPTLKRIPVVVLS 92
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 65 DIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGA 113
D+++ ++ MP MDG + L H L+ + M++ S + G H A
Sbjct: 62 DLILLNIEMPVMDGMEFLRHAKLKTRAKICMLA-----SVAVSGSPHAA 105
>pdb|3B0H|A Chain A, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
pdb|3B0H|B Chain B, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
Length = 588
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 190 RDCGDASSTKKARVVWSID------LHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTREN 243
RD G + +K R++W +D + VK + Q D+ + DL+ W RE
Sbjct: 323 RDLGTRGNRQKTRMMWLVDELGVEGFRAEVVKRMPQQKLDR---ESTEDLVQKQWERREY 379
Query: 244 VASHLQKYRLY--------LTRLQKDEL 263
+ H QK Y + R+Q D++
Sbjct: 380 LGVHPQKQEGYSFVGLHIPVGRVQADDM 407
>pdb|1E51|A Chain A, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
pdb|1E51|B Chain B, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
Length = 330
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 48 GLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMK 107
GLA A+ R+ ++G D+++ MP +D + E DLP+ + V GE + +
Sbjct: 232 GLALRAVD--RDVREGADMLMVKPGMPYLDIVR--EVKDKHPDLPLAVYHVSGEFAMLWH 287
Query: 108 GVQHGACD 115
G Q GA D
Sbjct: 288 GAQAGAFD 295
>pdb|1PV8|A Chain A, Crystal Structure Of A Low Activity F12l Mutant Of Human
Porphobilinogen Synthase
pdb|1PV8|B Chain B, Crystal Structure Of A Low Activity F12l Mutant Of Human
Porphobilinogen Synthase
Length = 330
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 48 GLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMK 107
GLA A+ R+ ++G D+++ MP +D + E DLP+ + V GE + +
Sbjct: 232 GLALRAVD--RDVREGADMLMVKPGMPYLDIVR--EVKDKHPDLPLAVYHVSGEFAMLWH 287
Query: 108 GVQHGACD 115
G Q GA D
Sbjct: 288 GAQAGAFD 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,617,860
Number of Sequences: 62578
Number of extensions: 792744
Number of successful extensions: 2155
Number of sequences better than 100.0: 177
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 1870
Number of HSP's gapped (non-prelim): 182
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)